BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] (334 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] gi|254040229|gb|ACT57025.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] Length = 334 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/334 (100%), Positives = 334/334 (100%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV Sbjct: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII Sbjct: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL Sbjct: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT Sbjct: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI Sbjct: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR Sbjct: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 >gi|315122879|ref|YP_004063368.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496281|gb|ADR52880.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 344 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 302/334 (90%), Positives = 321/334 (96%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DREGLLS +VS+ED D+ LLRPRTL+EFTGQ EACSNLKVFIEAAKAR+EALDHVLFV Sbjct: 1 MTDREGLLSHSVSKEDGDVLLLRPRTLDEFTGQTEACSNLKVFIEAAKARSEALDHVLFV 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII Sbjct: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL+NPLQDRFGIPIRL Sbjct: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLSNPLQDRFGIPIRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFYE+EDLKTIV RGAKL GL +TDEAA EIAMRSRGTPRIAGRLLRRVRDFAEVAHA+ Sbjct: 181 NFYEVEDLKTIVHRGAKLIGLPITDEAAYEIAMRSRGTPRIAGRLLRRVRDFAEVAHAEI 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ITR+IAD AL+RL++DKMGFDQLD+RYLTMIAR+FGGGPVGIETISAGLSEPRDAIEDLI Sbjct: 241 ITRDIADEALVRLSVDKMGFDQLDVRYLTMIARHFGGGPVGIETISAGLSEPRDAIEDLI 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPYMIQ+GFIQRTPRGRLLMP AW+HLGI IP++ Sbjct: 301 EPYMIQKGFIQRTPRGRLLMPSAWKHLGISIPYK 334 >gi|222149654|ref|YP_002550611.1| Holliday junction DNA helicase RuvB [Agrobacterium vitis S4] gi|254767403|sp|B9JRX1|RUVB_AGRVS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|221736636|gb|ACM37599.1| Holliday junction DNA helicase RuvB [Agrobacterium vitis S4] Length = 347 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 253/319 (79%), Positives = 287/319 (89%), Gaps = 1/319 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D S LRP+TL++FTGQ EA +NLK+FIEAAK R EALDHVLFVGPPGLGKTTLAQ++ Sbjct: 15 EDVD-SALRPQTLDDFTGQAEARANLKIFIEAAKNRGEALDHVLFVGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS VEEILYPAMEDFQL Sbjct: 74 AKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEILYPAMEDFQL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E+L+ IV+R Sbjct: 134 DLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVEELELIVRR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA+L GL +TD+ A EIA R+RGTPRIAGRLLRRVRDFAEVA A +TREIAD AL RL Sbjct: 194 GARLMGLGMTDDGAREIARRARGTPRIAGRLLRRVRDFAEVARAPAVTREIADEALTRLL 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D MG DQLD RYLTMIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQQGFIQRTP Sbjct: 254 VDNMGLDQLDTRYLTMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQQGFIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIPH 333 RGR+L IAW+HLG+ P Sbjct: 314 RGRVLTAIAWKHLGLMPPK 332 >gi|222086987|ref|YP_002545521.1| Holliday junction DNA helicase RuvB [Agrobacterium radiobacter K84] gi|221724435|gb|ACM27591.1| Holliday junction DNA helicase RuvB [Agrobacterium radiobacter K84] Length = 341 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 251/327 (76%), Positives = 292/327 (89%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 ++S ED D++L RP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFVGPPGLG Sbjct: 1 MISPEKRGEDLDVTL-RPQSLDEFTGQAEARANLKVFIEAAKGRGEALDHVLFVGPPGLG 59 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ VEEILY Sbjct: 60 KTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILY 119 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E Sbjct: 120 PAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVE 179 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV+RGA+L GL +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TREIA Sbjct: 180 ELELIVRRGARLMGLGITEEGAREIARRARGTPRIAGRLLRRVRDFAEVAKAEAVTREIA 239 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQ Sbjct: 240 DEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQ 299 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 QGFIQRTPRGR+L IAW+HLG+ P Sbjct: 300 QGFIQRTPRGRVLTAIAWKHLGLQPPK 326 >gi|150397835|ref|YP_001328302.1| Holliday junction DNA helicase RuvB [Sinorhizobium medicae WSM419] gi|166231558|sp|A6UCT7|RUVB_SINMW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|150029350|gb|ABR61467.1| Holliday junction DNA helicase RuvB [Sinorhizobium medicae WSM419] Length = 346 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 250/319 (78%), Positives = 289/319 (90%), Gaps = 1/319 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP+TL+EFTGQ EA +NLK+FIEAA+ R EALDHVLFVGPPGLGKTTLAQ++ Sbjct: 15 EDVDATL-RPQTLDEFTGQAEARANLKIFIEAARNRGEALDHVLFVGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ VEEILYPAMEDFQL Sbjct: 74 AKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDFQL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGPSARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RLNFY +E+L+ IV+R Sbjct: 134 DLIIGEGPSARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRLNFYTVEELELIVRR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA+L GL +TDE A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TR+IAD AL RL Sbjct: 194 GARLMGLGMTDEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTRQIADEALTRLL 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D MG DQLD RYLTMIA+NFGGGPVGIETI+AGLSEPRDAIED+IEPY+IQQGFIQRTP Sbjct: 254 VDSMGLDQLDRRYLTMIAQNFGGGPVGIETIAAGLSEPRDAIEDIIEPYLIQQGFIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIPH 333 RGR+L AW+HLG++ P Sbjct: 314 RGRVLTANAWKHLGLNPPK 332 >gi|332716452|ref|YP_004443918.1| Holliday junction DNA helicase RuvB [Agrobacterium sp. H13-3] gi|325063137|gb|ADY66827.1| Holliday junction DNA helicase RuvB [Agrobacterium sp. H13-3] Length = 349 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 252/333 (75%), Positives = 295/333 (88%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D + L+S + ED D ++ RP++L++FTGQ EA +NLKVFIEAAK R EALDHVLFV Sbjct: 4 MSDADRLISADKRGEDIDTTM-RPQSLDDFTGQAEARANLKVFIEAAKNRGEALDHVLFV 62 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++A+ELGVNF+STSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ Sbjct: 63 GPPGLGKTTLAQIMAKELGVNFKSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 122 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL Sbjct: 123 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 182 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +++L+ IV+RGA+L GL +TD+ A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ Sbjct: 183 AFYTVDELELIVRRGARLMGLNMTDDGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 242 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +TREIAD AL RL +DKMG DQLD+RYLTMIA NFGGGPVGIETI+AGLSEPRDAIED+I Sbjct: 243 VTREIADEALTRLLVDKMGLDQLDMRYLTMIAVNFGGGPVGIETIAAGLSEPRDAIEDII 302 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPYMIQQGFIQRTPRGR+L AW+HLG+ P Sbjct: 303 EPYMIQQGFIQRTPRGRVLTGTAWKHLGMQPPK 335 >gi|209550797|ref|YP_002282714.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226698781|sp|B5ZP80|RUVB_RHILW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|209536553|gb|ACI56488.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 346 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 253/327 (77%), Positives = 291/327 (88%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+S ED DI+L RP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFVGPPGLG Sbjct: 7 LISPEKRGEDLDITL-RPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFVGPPGLG 65 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ VEEILY Sbjct: 66 KTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILY 125 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E Sbjct: 126 PAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVE 185 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV+RGA+L L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TREIA Sbjct: 186 ELELIVRRGARLMNLPITEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTREIA 245 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQ Sbjct: 246 DEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQ 305 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 QGFIQRTPRGR+L IAW+HLG+ P Sbjct: 306 QGFIQRTPRGRVLTAIAWKHLGMQPPK 332 >gi|116253729|ref|YP_769567.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv. viciae 3841] gi|241206205|ref|YP_002977301.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|123384541|sp|Q1MC52|RUVB_RHIL3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|115258377|emb|CAK09480.1| putative Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv. viciae 3841] gi|240860095|gb|ACS57762.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 346 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 253/327 (77%), Positives = 291/327 (88%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+S ED DI+L RP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFVGPPGLG Sbjct: 7 LISPEKRGEDLDITL-RPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFVGPPGLG 65 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ VEEILY Sbjct: 66 KTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILY 125 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E Sbjct: 126 PAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVE 185 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV+RGA+L L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TREIA Sbjct: 186 ELELIVRRGARLMNLPITEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTREIA 245 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQ Sbjct: 246 DEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQ 305 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 QGFIQRTPRGR+L IAW+HLG+ P Sbjct: 306 QGFIQRTPRGRVLTAIAWKHLGMQPPK 332 >gi|163758800|ref|ZP_02165887.1| Holliday junction DNA helicase RuvB [Hoeflea phototrophica DFL-43] gi|162284090|gb|EDQ34374.1| Holliday junction DNA helicase RuvB [Hoeflea phototrophica DFL-43] Length = 345 Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust. Identities = 251/333 (75%), Positives = 295/333 (88%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D + L+S + ED D S LRP++L+EFTGQ EA +NLKVFIEAAK RAEALDHVLFV Sbjct: 1 MNDPDRLISPDKRGEDVD-STLRPQSLDEFTGQAEARANLKVFIEAAKGRAEALDHVLFV 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLNPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDFQLDL++GEGP+ARSVKI+LSRFTL+AATTR+GLLT PL+DRFGIP+RL Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSRFTLVAATTRLGLLTTPLRDRFGIPVRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +E+L+ IV+RGA++ GL +TD+ A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ Sbjct: 180 QFYTVEELELIVRRGARIMGLGMTDDGALEIARRARGTPRIAGRLLRRVRDFAEVAKAEA 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T++IAD AL RL++D +G DQLD RYL MIARNFGGGPVGIETI+AGLSEPRDAIED+I Sbjct: 240 VTQKIADEALTRLSVDSIGLDQLDRRYLDMIARNFGGGPVGIETIAAGLSEPRDAIEDII 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY+IQQGF+QRTPRGR++ AW H+G++ P Sbjct: 300 EPYLIQQGFLQRTPRGRVMTARAWGHIGLNPPK 332 >gi|218462461|ref|ZP_03502552.1| Holliday junction DNA helicase RuvB [Rhizobium etli Kim 5] Length = 346 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 251/327 (76%), Positives = 291/327 (88%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+S ED D++L RP++L+EFTGQ EA +NLK+FIEAAK R EALDHVLFVGPPGLG Sbjct: 7 LISPEKRGEDLDVTL-RPQSLDEFTGQAEARANLKIFIEAAKNRGEALDHVLFVGPPGLG 65 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ VEEILY Sbjct: 66 KTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILY 125 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E Sbjct: 126 PAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVE 185 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV+RGA+L L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TREIA Sbjct: 186 ELELIVRRGARLMNLPITEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTREIA 245 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQ Sbjct: 246 DEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQ 305 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 QGFIQRTPRGR+L IAW+HLG+ P Sbjct: 306 QGFIQRTPRGRVLTAIAWKHLGMQPPK 332 >gi|190893295|ref|YP_001979837.1| holliday junction DNA helicase [Rhizobium etli CIAT 652] gi|238692541|sp|B3PYZ5|RUVB_RHIE6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|190698574|gb|ACE92659.1| holliday junction DNA helicase protein [Rhizobium etli CIAT 652] Length = 346 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 252/327 (77%), Positives = 291/327 (88%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+S ED D++L RP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFVGPPGLG Sbjct: 7 LISPEKRGEDLDMTL-RPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFVGPPGLG 65 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ VEEILY Sbjct: 66 KTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILY 125 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E Sbjct: 126 PAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVE 185 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV+RGA+L L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TREIA Sbjct: 186 ELELIVRRGARLMNLPMTEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTREIA 245 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQ Sbjct: 246 DEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQ 305 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 QGFIQRTPRGR+L IAW+HLG+ P Sbjct: 306 QGFIQRTPRGRVLTAIAWKHLGMQPPK 332 >gi|86359073|ref|YP_470965.1| Holliday junction DNA helicase B [Rhizobium etli CFN 42] gi|20140295|sp|Q9L9C3|RUVB_RHIET RecName: Full=Holliday junction DNA helicase ruvB gi|123751943|sp|Q2K4J8|RUVB_RHIEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|7110155|gb|AAF36814.1|AF175525_2 RuvB [Rhizobium etli] gi|86283175|gb|ABC92238.1| holliday junction DNA helicase protein [Rhizobium etli CFN 42] Length = 346 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 252/327 (77%), Positives = 290/327 (88%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+S ED DI+L RP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFVGPPGLG Sbjct: 7 LISPEKRGEDLDITL-RPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFVGPPGLG 65 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ VEEILY Sbjct: 66 KTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILY 125 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED+QLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL FY +E Sbjct: 126 PAMEDYQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLTFYTVE 185 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV+RGA+L L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TREIA Sbjct: 186 ELELIVRRGARLMNLPMTEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTREIA 245 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQ Sbjct: 246 DEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQ 305 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 QGFIQRTPRGR+L IAW+HLG+ P Sbjct: 306 QGFIQRTPRGRVLTAIAWKHLGMQPPK 332 >gi|15891226|ref|NP_356898.1| Holliday junction DNA helicase B [Agrobacterium tumefaciens str. C58] gi|21759426|sp|Q8U9K6|RUVB_AGRT5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|15159589|gb|AAK89683.1| Holliday junction DNA helicase RuvB [Agrobacterium tumefaciens str. C58] Length = 346 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 251/333 (75%), Positives = 292/333 (87%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D + L++ ED D +L RP++L++FTGQ EA +NLKVFIEAAK R EALDHVLFV Sbjct: 1 MSDADRLITPEKRGEDIDTTL-RPQSLDDFTGQAEARANLKVFIEAAKNRGEALDHVLFV 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++A+ELGVNF+STSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAQIMAKELGVNFKSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +++L+ IV+RGA+L GL +TD A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ Sbjct: 180 AFYTVDELELIVRRGARLMGLNMTDGGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +TREIAD AL RL +D MG DQLD+RYLTMIA NFGGGPVGIETI+AGLSEPRDAIED+I Sbjct: 240 VTREIADEALTRLLVDNMGLDQLDMRYLTMIAVNFGGGPVGIETIAAGLSEPRDAIEDII 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPYMIQQGFIQRTPRGR+L AW+HLG+ P Sbjct: 300 EPYMIQQGFIQRTPRGRILTATAWKHLGLQPPK 332 >gi|227823319|ref|YP_002827291.1| Holliday junction DNA helicase RuvB [Sinorhizobium fredii NGR234] gi|227342320|gb|ACP26538.1| holliday junction DNA helicase RuvB [Sinorhizobium fredii NGR234] Length = 349 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 247/319 (77%), Positives = 288/319 (90%), Gaps = 1/319 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP++L+EFTGQ EA +NLK+FIEAA+ R EALDHVLFVGPPGLGKTTLAQ++ Sbjct: 18 EDLDATL-RPQSLDEFTGQAEARANLKIFIEAARNRGEALDHVLFVGPPGLGKTTLAQIM 76 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ VEEILYPAMEDFQL Sbjct: 77 AKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDFQL 136 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RLNFY +E+L+ IV+R Sbjct: 137 DLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRLNFYTVEELELIVRR 196 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA+L GL +TDE A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TR+IAD AL RL Sbjct: 197 GARLMGLGMTDEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTRQIADEALTRLL 256 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D MG DQLD RYL MIA+NFGGGPVGIETI+AGLSEPRDAIED+IEPY+IQQGFIQRTP Sbjct: 257 VDSMGLDQLDRRYLFMIAQNFGGGPVGIETIAAGLSEPRDAIEDIIEPYLIQQGFIQRTP 316 Query: 315 RGRLLMPIAWQHLGIDIPH 333 RGR+L AW+HLG++ P Sbjct: 317 RGRVLTANAWKHLGLNPPK 335 >gi|15966502|ref|NP_386855.1| Holliday junction DNA helicase B [Sinorhizobium meliloti 1021] gi|307300461|ref|ZP_07580241.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti BL225C] gi|307318326|ref|ZP_07597761.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti AK83] gi|20140125|sp|Q92M92|RUVB_RHIME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|15075773|emb|CAC47328.1| Probable holliday junction DNA helicase [Sinorhizobium meliloti 1021] gi|306896008|gb|EFN26759.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti AK83] gi|306904627|gb|EFN35211.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti BL225C] Length = 346 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 247/319 (77%), Positives = 288/319 (90%), Gaps = 1/319 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D ++ RP+TL+EFTGQ EA +NLK+FIEAA+ R EALDHVLFVGPPGLGKTTLAQ++ Sbjct: 15 EDLDATM-RPQTLDEFTGQAEARANLKIFIEAARNRGEALDHVLFVGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ VEEILYPAMEDFQL Sbjct: 74 AKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDFQL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RLNFY +E+L+ IV+R Sbjct: 134 DLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRLNFYTVEELELIVRR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA+L GL +TDE A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +T +IAD AL RL Sbjct: 194 GARLMGLGMTDEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTLKIADEALTRLL 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D MG DQLD RYLTMIA+NFGGGPVGIETI+AGLSEPRDAIED+IEPY+IQQGFIQRTP Sbjct: 254 VDSMGLDQLDRRYLTMIAQNFGGGPVGIETIAAGLSEPRDAIEDIIEPYLIQQGFIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIPH 333 RGR+L AW+HLG++ P Sbjct: 314 RGRVLTANAWKHLGLNPPR 332 >gi|319781020|ref|YP_004140496.1| Holliday junction DNA helicase RuvB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166908|gb|ADV10446.1| Holliday junction DNA helicase RuvB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 345 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/319 (75%), Positives = 283/319 (88%), Gaps = 1/319 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 EDA+ +L RP+TL++F GQ A +NLKVFIEAAK+R+EALDHVLFVGPPGLGKTTLAQ++ Sbjct: 15 EDAEQTL-RPQTLDDFVGQAAARANLKVFIEAAKSRSEALDHVLFVGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGVNFRSTSGPVIAKAGDLAALLTNLE+ DVLFIDEIHRLS VEEILYPAMEDFQL Sbjct: 74 ARELGVNFRSTSGPVIAKAGDLAALLTNLEEGDVLFIDEIHRLSPAVEEILYPAMEDFQL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI+L+RFTL+AATTR+GLLTNPL+DRFGIP+RLNFY +E+L+ IV+R Sbjct: 134 DLIIGEGPAARSVKIDLARFTLVAATTRLGLLTNPLRDRFGIPVRLNFYTVEELEQIVRR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ + + ++ A EIA R+RGTPRIAGRLLRRVRDFA VA + R+IAD AL RL Sbjct: 194 GARILQMPLGNDGALEIARRARGTPRIAGRLLRRVRDFASVAGDGHVDRKIADEALTRLE 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D LD RYL+MIARNFGGGPVGIETI+AGLSEPRDAIED+IEPY+IQQGFIQRTP Sbjct: 254 VDALGLDALDRRYLSMIARNFGGGPVGIETIAAGLSEPRDAIEDIIEPYLIQQGFIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIPH 333 RGR+L AW+HLG+D P Sbjct: 314 RGRMLTANAWRHLGLDAPK 332 >gi|239832788|ref|ZP_04681117.1| Holliday junction DNA helicase RuvB [Ochrobactrum intermedium LMG 3301] gi|239825055|gb|EEQ96623.1| Holliday junction DNA helicase RuvB [Ochrobactrum intermedium LMG 3301] Length = 346 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 243/332 (73%), Positives = 287/332 (86%), Gaps = 2/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L++ + S+ D D + LRP+ L++F GQ A +NLKVFIEAAK R EALDHVLFV Sbjct: 1 MSDRNPLINPD-SRADED-NTLRPQMLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFV 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 59 GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY +E+L+ IV+RGA++ + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISPDGALEVARRSRGTPRIAGRLLRRVRDFALVAGADV 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R+IAD AL RL +D G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I Sbjct: 239 IDRKIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQQGF+QRTPRGR+L +AWQHLG+ P Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330 >gi|153008544|ref|YP_001369759.1| Holliday junction DNA helicase RuvB [Ochrobactrum anthropi ATCC 49188] gi|166231507|sp|A6WY76|RUVB_OCHA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|151560432|gb|ABS13930.1| Holliday junction DNA helicase RuvB [Ochrobactrum anthropi ATCC 49188] Length = 346 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 243/334 (72%), Positives = 285/334 (85%), Gaps = 6/334 (1%) Query: 1 MMDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M DR L+ R V +++ LRP+TL++F GQ A +NLKVFIEAAK R EALDHVL Sbjct: 1 MSDRNPLIDADRRVDEDNT----LRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVL 56 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 FVGPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 57 FVGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLS 116 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP Sbjct: 117 PAVEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPT 176 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RLNFY +E+L+ IV+RGA++ + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A Sbjct: 177 RLNFYTVEELEYIVRRGARIMQMGISPDGALEVARRSRGTPRIAGRLLRRVRDFALVAGA 236 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 I R+IAD AL RL +D G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED Sbjct: 237 DVIDRKIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIED 296 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +IEPY+IQQGF+QRTPRGR+L +AWQHLG+ P Sbjct: 297 IIEPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330 >gi|23502560|ref|NP_698687.1| Holliday junction DNA helicase RuvB [Brucella suis 1330] gi|62290574|ref|YP_222367.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 1 str. 9-941] gi|82700490|ref|YP_415064.1| Holliday junction DNA helicase RuvB [Brucella melitensis biovar Abortus 2308] gi|148559079|ref|YP_001259555.1| Holliday junction DNA helicase RuvB [Brucella ovis ATCC 25840] gi|161619631|ref|YP_001593518.1| Holliday junction DNA helicase B [Brucella canis ATCC 23365] gi|163845282|ref|YP_001622937.1| Holliday junction DNA helicase RuvB [Brucella suis ATCC 23445] gi|189024792|ref|YP_001935560.1| Holliday junction DNA helicase RuvB [Brucella abortus S19] gi|225628271|ref|ZP_03786305.1| Holliday junction DNA helicase RuvB [Brucella ceti str. Cudo] gi|237816079|ref|ZP_04595075.1| Holliday junction DNA helicase RuvB [Brucella abortus str. 2308 A] gi|254689870|ref|ZP_05153124.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 6 str. 870] gi|254694363|ref|ZP_05156191.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 3 str. Tulya] gi|254698021|ref|ZP_05159849.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 2 str. 86/8/59] gi|254700363|ref|ZP_05162191.1| Holliday junction DNA helicase RuvB [Brucella suis bv. 5 str. 513] gi|254703481|ref|ZP_05165309.1| Holliday junction DNA helicase RuvB [Brucella suis bv. 3 str. 686] gi|254708430|ref|ZP_05170258.1| Holliday junction DNA helicase RuvB [Brucella pinnipedialis M163/99/10] gi|254708716|ref|ZP_05170527.1| Holliday junction DNA helicase RuvB [Brucella pinnipedialis B2/94] gi|254714563|ref|ZP_05176374.1| Holliday junction DNA helicase RuvB [Brucella ceti M644/93/1] gi|254717460|ref|ZP_05179271.1| Holliday junction DNA helicase RuvB [Brucella ceti M13/05/1] gi|254730905|ref|ZP_05189483.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 4 str. 292] gi|256030242|ref|ZP_05443856.1| Holliday junction DNA helicase RuvB [Brucella pinnipedialis M292/94/1] gi|256061739|ref|ZP_05451876.1| Holliday junction DNA helicase RuvB [Brucella neotomae 5K33] gi|256160417|ref|ZP_05458106.1| Holliday junction DNA helicase RuvB [Brucella ceti M490/95/1] gi|256255623|ref|ZP_05461159.1| Holliday junction DNA helicase RuvB [Brucella ceti B1/94] gi|256258124|ref|ZP_05463660.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 9 str. C68] gi|256370111|ref|YP_003107622.1| Holliday junction DNA helicase RuvB [Brucella microti CCM 4915] gi|260167917|ref|ZP_05754728.1| Holliday junction DNA helicase RuvB [Brucella sp. F5/99] gi|260547182|ref|ZP_05822920.1| Holliday junction DNA helicase RuvB [Brucella abortus NCTC 8038] gi|260568787|ref|ZP_05839255.1| Holliday junction DNA helicase RuvB [Brucella suis bv. 4 str. 40] gi|260755402|ref|ZP_05867750.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus bv. 6 str. 870] gi|260758624|ref|ZP_05870972.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus bv. 4 str. 292] gi|260762456|ref|ZP_05874793.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus bv. 2 str. 86/8/59] gi|260884417|ref|ZP_05896031.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus bv. 9 str. C68] gi|261214673|ref|ZP_05928954.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus bv. 3 str. Tulya] gi|261219292|ref|ZP_05933573.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti M13/05/1] gi|261222826|ref|ZP_05937107.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti B1/94] gi|261315929|ref|ZP_05955126.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella pinnipedialis M163/99/10] gi|261316208|ref|ZP_05955405.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella pinnipedialis B2/94] gi|261322353|ref|ZP_05961550.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti M644/93/1] gi|261325743|ref|ZP_05964940.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella neotomae 5K33] gi|261750858|ref|ZP_05994567.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella suis bv. 5 str. 513] gi|261754111|ref|ZP_05997820.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella suis bv. 3 str. 686] gi|261757356|ref|ZP_06001065.1| holliday junction DNA helicase RuvB [Brucella sp. F5/99] gi|265987270|ref|ZP_06099827.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella pinnipedialis M292/94/1] gi|265998785|ref|ZP_06111342.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti M490/95/1] gi|297248973|ref|ZP_06932681.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 5 str. B3196] gi|306841421|ref|ZP_07474123.1| Holliday junction DNA helicase RuvB [Brucella sp. BO2] gi|306844694|ref|ZP_07477279.1| Holliday junction DNA helicase RuvB [Brucella sp. BO1] gi|29336738|sp|Q8FZ02|RUVB_BRUSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|81309382|sp|Q57BH8|RUVB_BRUAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|97189931|sp|Q2YRD2|RUVB_BRUA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231466|sp|A5VS58|RUVB_BRUO2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189045782|sp|A9M7K0|RUVB_BRUC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189045875|sp|A9WWH9|RUVB_BRUSI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238689392|sp|B2S7D9|RUVB_BRUA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|23348561|gb|AAN30602.1| Holliday junction DNA helicase RuvB [Brucella suis 1330] gi|62196706|gb|AAX75006.1| RuvB, Holliday junction DNA helicase [Brucella abortus bv. 1 str. 9-941] gi|82616591|emb|CAJ11670.1| CbxX/CfqX superfamily:Disease resistance protein:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA ATPase, central region: [Brucella melitensis biovar Abortus 2308] gi|148370336|gb|ABQ60315.1| holliday junction DNA helicase RuvB [Brucella ovis ATCC 25840] gi|161336442|gb|ABX62747.1| Holliday junction DNA helicase RuvB [Brucella canis ATCC 23365] gi|163676005|gb|ABY40115.1| Holliday junction DNA helicase RuvB [Brucella suis ATCC 23445] gi|189020364|gb|ACD73086.1| Holliday junction DNA helicase RuvB [Brucella abortus S19] gi|225616117|gb|EEH13165.1| Holliday junction DNA helicase RuvB [Brucella ceti str. Cudo] gi|237788742|gb|EEP62954.1| Holliday junction DNA helicase RuvB [Brucella abortus str. 2308 A] gi|256000274|gb|ACU48673.1| Holliday junction DNA helicase RuvB [Brucella microti CCM 4915] gi|260095547|gb|EEW79425.1| Holliday junction DNA helicase RuvB [Brucella abortus NCTC 8038] gi|260154171|gb|EEW89253.1| Holliday junction DNA helicase RuvB [Brucella suis bv. 4 str. 40] gi|260668942|gb|EEX55882.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus bv. 4 str. 292] gi|260672882|gb|EEX59703.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus bv. 2 str. 86/8/59] gi|260675510|gb|EEX62331.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus bv. 6 str. 870] gi|260873945|gb|EEX81014.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus bv. 9 str. C68] gi|260916280|gb|EEX83141.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus bv. 3 str. Tulya] gi|260921410|gb|EEX88063.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti B1/94] gi|260924381|gb|EEX90949.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti M13/05/1] gi|261295043|gb|EEX98539.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti M644/93/1] gi|261295431|gb|EEX98927.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella pinnipedialis B2/94] gi|261301723|gb|EEY05220.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella neotomae 5K33] gi|261304955|gb|EEY08452.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella pinnipedialis M163/99/10] gi|261737340|gb|EEY25336.1| holliday junction DNA helicase RuvB [Brucella sp. F5/99] gi|261740611|gb|EEY28537.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella suis bv. 5 str. 513] gi|261743864|gb|EEY31790.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella suis bv. 3 str. 686] gi|262553474|gb|EEZ09243.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti M490/95/1] gi|264659467|gb|EEZ29728.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella pinnipedialis M292/94/1] gi|297174106|gb|EFH33463.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 5 str. B3196] gi|306274866|gb|EFM56636.1| Holliday junction DNA helicase RuvB [Brucella sp. BO1] gi|306288527|gb|EFM59879.1| Holliday junction DNA helicase RuvB [Brucella sp. BO2] Length = 346 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 243/332 (73%), Positives = 285/332 (85%), Gaps = 2/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+ + + D D + LRP+TL++F GQ A +NLKVFIEAAK R EALDHVLFV Sbjct: 1 MSDRNPLIDAD-RRADED-NTLRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFV 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 59 GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY +E+L+ IV+RGA++ + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISSDGAREVARRSRGTPRIAGRLLRRVRDFALVAGADI 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R IAD AL RL +D G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I Sbjct: 239 IDRRIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQQGF+QRTPRGR+L +AWQHLG+ P Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330 >gi|254719705|ref|ZP_05181516.1| Holliday junction DNA helicase RuvB [Brucella sp. 83/13] gi|265984720|ref|ZP_06097455.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella sp. 83/13] gi|306837836|ref|ZP_07470698.1| Holliday junction DNA helicase RuvB [Brucella sp. NF 2653] gi|264663312|gb|EEZ33573.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella sp. 83/13] gi|306407075|gb|EFM63292.1| Holliday junction DNA helicase RuvB [Brucella sp. NF 2653] Length = 346 Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust. Identities = 243/333 (72%), Positives = 285/333 (85%), Gaps = 4/333 (1%) Query: 1 MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR L+ + + ED + LRP+TL++F GQ A +NLKVFIEAAK R EALDHVLF Sbjct: 1 MSDRNPLIDADRCADED---NTLRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLF 57 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 VGPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 58 VGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSP 117 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+R Sbjct: 118 AVEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVR 177 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 LNFY +E+L+ IV+RGA++ + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A Sbjct: 178 LNFYTVEELEYIVRRGARIMQMGISSDGAREVARRSRGTPRIAGRLLRRVRDFALVAGAD 237 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I R IAD AL RL +D G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+ Sbjct: 238 IIDRRIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDI 297 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 IEPY+IQQGF+QRTPRGR+L +AWQHLG+ P Sbjct: 298 IEPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330 >gi|294850953|ref|ZP_06791629.1| Holliday junction DNA helicase RuvB [Brucella sp. NVSL 07-0026] gi|294821596|gb|EFG38592.1| Holliday junction DNA helicase RuvB [Brucella sp. NVSL 07-0026] Length = 346 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 242/332 (72%), Positives = 285/332 (85%), Gaps = 2/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+ + + D D + LRP+TL++F GQ A +NLKVFIEAAK R EALDHVLF+ Sbjct: 1 MSDRNPLIDAD-RRADED-NTLRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFI 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 59 GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY +E+L+ IV+RGA++ + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISSDGAREVARRSRGTPRIAGRLLRRVRDFALVAGADI 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R IAD AL RL +D G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I Sbjct: 239 IDRRIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQQGF+QRTPRGR+L +AWQHLG+ P Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330 >gi|17986617|ref|NP_539251.1| Holliday junction DNA helicase RuvB [Brucella melitensis bv. 1 str. 16M] gi|225853158|ref|YP_002733391.1| Holliday junction DNA helicase RuvB [Brucella melitensis ATCC 23457] gi|256045312|ref|ZP_05448206.1| Holliday junction DNA helicase RuvB [Brucella melitensis bv. 1 str. Rev.1] gi|256114270|ref|ZP_05455015.1| Holliday junction DNA helicase RuvB [Brucella melitensis bv. 3 str. Ether] gi|256263351|ref|ZP_05465883.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella melitensis bv. 2 str. 63/9] gi|260565797|ref|ZP_05836280.1| Holliday junction ATP-dependent DNA helicase ruvB [Brucella melitensis bv. 1 str. 16M] gi|265991737|ref|ZP_06104294.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella melitensis bv. 1 str. Rev.1] gi|265995574|ref|ZP_06108131.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella melitensis bv. 3 str. Ether] gi|20140058|sp|Q8YIV5|RUVB_BRUME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767415|sp|C0REW5|RUVB_BRUMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|17982230|gb|AAL51515.1| holliday junction DNA helicase ruvb [Brucella melitensis bv. 1 str. 16M] gi|225641523|gb|ACO01437.1| Holliday junction DNA helicase RuvB [Brucella melitensis ATCC 23457] gi|260151170|gb|EEW86265.1| Holliday junction ATP-dependent DNA helicase ruvB [Brucella melitensis bv. 1 str. 16M] gi|262766858|gb|EEZ12476.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella melitensis bv. 3 str. Ether] gi|263002693|gb|EEZ15096.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella melitensis bv. 1 str. Rev.1] gi|263093350|gb|EEZ17419.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella melitensis bv. 2 str. 63/9] gi|326409715|gb|ADZ66780.1| Holliday junction DNA helicase RuvB [Brucella melitensis M28] gi|326539422|gb|ADZ87637.1| holliday junction DNA helicase RuvB [Brucella melitensis M5-90] Length = 346 Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust. Identities = 242/332 (72%), Positives = 284/332 (85%), Gaps = 2/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+ + + D D + LRP+TL++F GQ A +NLKVFIEAAK R EALDHVLFV Sbjct: 1 MSDRNPLIDAD-RRADED-NTLRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFV 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 59 GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY +E+L+ IV+RGA++ + ++ + A E+A RSRGTPRI GRLLRRVRDFA VA A Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISSDGAREVARRSRGTPRIVGRLLRRVRDFALVAGADI 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R IAD AL RL +D G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I Sbjct: 239 IDRRIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQQGF+QRTPRGR+L +AWQHLG+ P Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330 >gi|114706319|ref|ZP_01439221.1| holliday junction DNA helicase protein [Fulvimarina pelagi HTCC2506] gi|114538180|gb|EAU41302.1| holliday junction DNA helicase protein [Fulvimarina pelagi HTCC2506] Length = 348 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 240/332 (72%), Positives = 286/332 (86%), Gaps = 1/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M + L++ ED D++L RP+ L+EF GQ +A +NLKVFI AAKAR EALDHVLFV Sbjct: 1 MSETSRLIAPEKRGEDIDMTL-RPQALDEFVGQAQARANLKVFIGAAKARGEALDHVLFV 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++A+ELGVNFR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAQIMAKELGVNFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRIGLLTTPLRDRFGIPVRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY + +L+ IV RGA+L GLA+ + EIA RSRGTPRIAGRLLRRVRDFAE A A T Sbjct: 180 NFYTVAELEHIVTRGARLMGLAMDKAGSQEIARRSRGTPRIAGRLLRRVRDFAEFAGAGT 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +TR+IAD AL RL +D +G DQLD RYL +IA NFGGGPVGIETI+A LSEPRDAIED++ Sbjct: 240 VTRQIADEALSRLEVDSLGLDQLDRRYLDLIALNFGGGPVGIETIAAALSEPRDAIEDIV 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++QQGFIQRTPRGRL+ +A++HLG+ +P Sbjct: 300 EPYLLQQGFIQRTPRGRLITQVAFRHLGLALP 331 >gi|13473338|ref|NP_104905.1| Holliday junction DNA helicase RuvB [Mesorhizobium loti MAFF303099] gi|20140185|sp|Q98F76|RUVB_RHILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|14024087|dbj|BAB50691.1| Holliday branch migration protein; RuvB [Mesorhizobium loti MAFF303099] Length = 345 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 241/319 (75%), Positives = 278/319 (87%), Gaps = 1/319 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 EDAD +L RP+TL +F GQ +NLKVFIEAAK R EALDHVLFVGPPGLGKTTLAQ++ Sbjct: 15 EDADQTL-RPQTLADFVGQAAVRANLKVFIEAAKGRNEALDHVLFVGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGVNFRSTSGPVIAKAGDLAALLTNLE+ DVLFIDEIHRL+ VEEILYPAMEDFQL Sbjct: 74 ARELGVNFRSTSGPVIAKAGDLAALLTNLEEGDVLFIDEIHRLNPAVEEILYPAMEDFQL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI+L+RFTL+AATTR+GLLTNPL+DRFGIP+RLNFY +E+L+ IV+R Sbjct: 134 DLIIGEGPAARSVKIDLARFTLVAATTRLGLLTNPLRDRFGIPVRLNFYTVEELEQIVRR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ + + D+ A EIA R+RGTPRIAGRLLRRVRDFA VA + R IAD AL RL Sbjct: 194 GARILQMPLGDDGALEIARRARGTPRIAGRLLRRVRDFASVAGDGHVDRLIADEALTRLE 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D LD RYL+MIARNFGGGPVGIETI+AGLSEPRDAIED+IEPY+IQQGFIQRTP Sbjct: 254 VDALGLDALDRRYLSMIARNFGGGPVGIETIAAGLSEPRDAIEDIIEPYLIQQGFIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIPH 333 RGR+L AW+HLG+D P Sbjct: 314 RGRMLTANAWRHLGLDAPK 332 >gi|110635505|ref|YP_675713.1| Holliday junction DNA helicase B [Mesorhizobium sp. BNC1] gi|122965617|sp|Q11DH7|RUVB_MESSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|110286489|gb|ABG64548.1| Holliday junction DNA helicase subunit RuvB [Chelativorans sp. BNC1] Length = 345 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 236/319 (73%), Positives = 281/319 (88%), Gaps = 1/319 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D ++ RP++L+EF GQ A +NLKVFIEAA++R EALDHVLFVGPPGLGKTTLAQ++ Sbjct: 15 EDIDTTM-RPQSLDEFVGQKTARANLKVFIEAARSRGEALDHVLFVGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ VEEILYPAMED+QL Sbjct: 74 ARELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDYQL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRL FY +++L+ IV R Sbjct: 134 DLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLEFYTVDELQAIVTR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ G+ + ++ A EIA R+RGTPRIAGRLLRRVRDFA VA A+ +TR+IADAAL RL Sbjct: 194 GARIMGMPLAEDGAEEIARRARGTPRIAGRLLRRVRDFAYVAGAENVTRQIADAALSRLE 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G DQLD RYL MI NFGGGPVGIETI+A LSEPRDAIED+IEPY+IQQGFIQRTP Sbjct: 254 VDALGLDQLDRRYLHMIVENFGGGPVGIETIAAALSEPRDAIEDIIEPYLIQQGFIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIPH 333 RGR+L AW+HLG++ P Sbjct: 314 RGRVLAAKAWRHLGLNPPK 332 >gi|260467058|ref|ZP_05813238.1| Holliday junction DNA helicase RuvB [Mesorhizobium opportunistum WSM2075] gi|259029167|gb|EEW30463.1| Holliday junction DNA helicase RuvB [Mesorhizobium opportunistum WSM2075] Length = 345 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 240/319 (75%), Positives = 279/319 (87%), Gaps = 1/319 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 EDA+ +L RP+TL++F GQ +NLKVFIEAAK R EALDHVLFVGPPGLGKTTLAQ++ Sbjct: 15 EDAEQTL-RPQTLDDFVGQAAVRANLKVFIEAAKGRNEALDHVLFVGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGVNFRSTSGPVIAKAGDLAALLTNLE+ DVLFIDEIHRL+ VEEILYPAMEDFQL Sbjct: 74 ARELGVNFRSTSGPVIAKAGDLAALLTNLEEGDVLFIDEIHRLNPAVEEILYPAMEDFQL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI+L+RFTL+AATTR+GLLTNPL+DRFGIP+RLNFY +E+L+ IV+R Sbjct: 134 DLIIGEGPAARSVKIDLARFTLVAATTRLGLLTNPLRDRFGIPVRLNFYTVEELEQIVRR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ + + D+ A EIA R+RGTPRIAGRLLRRVRDFA VA + R IAD AL RL Sbjct: 194 GARILQMPLGDDGALEIARRARGTPRIAGRLLRRVRDFASVAGDGHVDRLIADEALTRLE 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D LD RYL+MIARNFGGGPVGIETI+AGLSEPRDAIED+IEPY+IQQGFIQRTP Sbjct: 254 VDALGLDALDRRYLSMIARNFGGGPVGIETIAAGLSEPRDAIEDIIEPYLIQQGFIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIPH 333 RGR+L AW+HLG+D P Sbjct: 314 RGRMLTGNAWRHLGLDAPK 332 >gi|90418967|ref|ZP_01226878.1| Holliday junction specific DNA helicase, subunit ruvB [Aurantimonas manganoxydans SI85-9A1] gi|90337047|gb|EAS50752.1| Holliday junction specific DNA helicase, subunit ruvB [Aurantimonas manganoxydans SI85-9A1] Length = 357 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 236/332 (71%), Positives = 282/332 (84%), Gaps = 1/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 +M L++ ED D +L RP+ L++F GQ A +NLK+FIEAAK R EALDHVLFV Sbjct: 9 LMSDARLITPEKHGEDIDATL-RPQRLDDFVGQAAARANLKIFIEAAKNRGEALDHVLFV 67 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 68 GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 127 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL Sbjct: 128 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 187 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY + +L+ IV RGA+L L + ++ A EIA R+RGTPRIAGRLLRRVRDFA+VA A T Sbjct: 188 NFYTVAELEHIVTRGARLMRLPMAEDGAREIARRARGTPRIAGRLLRRVRDFADVAGAAT 247 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + R++AD AL RL +D +G DQLD RYL +IA NFGGGPVGIETI+A LSEPRDAIED++ Sbjct: 248 VDRKVADEALSRLEVDSLGLDQLDRRYLELIAMNFGGGPVGIETIAAALSEPRDAIEDIV 307 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++QQGF+QRTPRGRLL A+ HLG+ +P Sbjct: 308 EPYLLQQGFLQRTPRGRLLTQRAFAHLGLAVP 339 >gi|328542538|ref|YP_004302647.1| Holliday junction ATP-dependent DNA helicase ruvB [polymorphum gilvum SL003B-26A1] gi|326412284|gb|ADZ69347.1| Holliday junction ATP-dependent DNA helicase ruvB [Polymorphum gilvum SL003B-26A1] Length = 347 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/334 (69%), Positives = 284/334 (85%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D + +++ + ++ D ++ RP+ L+EF GQ +A +NLK+FIEAAKAR EALDHVLFV Sbjct: 1 MDDNQRIVTPQIRGDEIDTTM-RPQALDEFVGQAQARANLKIFIEAAKARGEALDHVLFV 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++ARELGVNFR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 60 GPPGLGKTTLAQIMARELGVNFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL Sbjct: 120 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +E+L+ IV RGA++ G+ + + A EIA RSRGTPRIAGRLLRRVRDFA VA + Sbjct: 180 EFYTVEELELIVNRGARILGIGMAPDGAREIAKRSRGTPRIAGRLLRRVRDFAVVAGKQA 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + RE+AD AL +L +D G D LD RYLT IA NFGGGPVGIETI+A LSEPRDAIE+++ Sbjct: 240 VDREVADRALSQLEVDGAGLDSLDRRYLTQIALNFGGGPVGIETIAAALSEPRDAIEEIV 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY+IQ GF+QRTPRGRLL +A++HLG+ +P R Sbjct: 300 EPYLIQNGFLQRTPRGRLLTALAFRHLGLAVPQR 333 >gi|118588332|ref|ZP_01545741.1| Holliday junction DNA helicase B [Stappia aggregata IAM 12614] gi|118439038|gb|EAV45670.1| Holliday junction DNA helicase B [Stappia aggregata IAM 12614] Length = 346 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 230/334 (68%), Positives = 283/334 (84%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D +++ + ++ D S +RP+ L++F GQ +A +NLKVFI AAKAR EALDHVLFV Sbjct: 1 MSDDTRIVTPEIRGDEID-STMRPQVLDDFVGQAQARANLKVFIGAAKARGEALDHVLFV 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++ARELGVNFR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAQIMARELGVNFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL Sbjct: 120 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY + +L+ IV+RGA + G+ + +E A EIA RSRGTPRIAGRLLRRVRDFA VA + Sbjct: 180 QFYTVPELEHIVKRGASILGIGMVEEGAREIAKRSRGTPRIAGRLLRRVRDFAIVAGVER 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + RE+AD ALL+L +D G D LD RYL+ IA NFGGGPVGIETI+A LSEPRDAIE+++ Sbjct: 240 VDRELADRALLQLEVDSAGLDSLDRRYLSQIAVNFGGGPVGIETIAAALSEPRDAIEEIV 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY+IQ GF+QRTPRGR+L P+A++HLG+ P R Sbjct: 300 EPYLIQNGFLQRTPRGRILTPMAFEHLGLAAPSR 333 >gi|182677134|ref|YP_001831280.1| Holliday junction DNA helicase RuvB [Beijerinckia indica subsp. indica ATCC 9039] gi|226725454|sp|B2IBR9|RUVB_BEII9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|182633017|gb|ACB93791.1| Holliday junction DNA helicase RuvB [Beijerinckia indica subsp. indica ATCC 9039] Length = 350 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 239/330 (72%), Positives = 274/330 (83%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E L++ V ED + LRP TL +FTGQ A NL VFI AAKAR EALDHVLFVGPPG Sbjct: 6 ERLVTSEVRDEDMTEASLRPLTLADFTGQAAARQNLSVFIAAAKARREALDHVLFVGPPG 65 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LT LE+RDVLFIDEIHRL+ VEEI Sbjct: 66 LGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTALEERDVLFIDEIHRLNPAVEEI 125 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDFQLDL++GEGP ARSVKI+L+RFTL+ ATTR GLLT PL+DRFGIPIRL FY Sbjct: 126 LYPAMEDFQLDLIIGEGPGARSVKIDLARFTLVGATTRAGLLTTPLRDRFGIPIRLEFYT 185 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 IE+L+ IV RGA++ GLA+ E A EIA R+RGTPRIAGRLLRRVRDFA V +++TR Sbjct: 186 IEELERIVLRGARVQGLALEKEGANEIAKRARGTPRIAGRLLRRVRDFAIVDGVESVTRT 245 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +AD AL L +D +G DQ+D RYL +IA +FGGGPVGIETI+A LSEPRDAIED+IEPY+ Sbjct: 246 LADKALSLLDVDPIGLDQMDRRYLNVIALSFGGGPVGIETIAAALSEPRDAIEDIIEPYL 305 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 IQQGF+QRTPRGRLL P A++HLG+ P R Sbjct: 306 IQQGFLQRTPRGRLLTPHAFRHLGLKEPVR 335 >gi|254473086|ref|ZP_05086484.1| Holliday junction DNA helicase RuvB [Pseudovibrio sp. JE062] gi|211957807|gb|EEA93009.1| Holliday junction DNA helicase RuvB [Pseudovibrio sp. JE062] Length = 348 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 228/313 (72%), Positives = 273/313 (87%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+TL++FTGQ +A NLKVFI AAKAR EALDHVLFVGPPGLGKTTLAQ++ARELG Sbjct: 20 SGMRPQTLDDFTGQAQARENLKVFIGAAKARNEALDHVLFVGPPGLGKTTLAQIMARELG 79 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 VNFR+TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL+ VEE+LYPAMED+QLDL++G Sbjct: 80 VNFRATSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLNPAVEEVLYPAMEDYQLDLIIG 139 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 EGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL FY ++L+ IV+RGA+L Sbjct: 140 EGPAARSVKIDLAKFTLVAATTRIGLLTTPLRDRFGIPVRLEFYTPQELELIVKRGARLL 199 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 G+ ++D+ A EIA RSRGTPRIAGRLLRRVRDFA VA I +AD AL +L +D G Sbjct: 200 GIGMSDDGATEIAKRSRGTPRIAGRLLRRVRDFAIVAGDADIDAGLADRALRQLEVDSAG 259 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 FD LD RYL IA NFGGGPVGIETI+A LSEPRDAIE+++EPY+IQ G++QRTPRGR+L Sbjct: 260 FDSLDRRYLKQIAMNFGGGPVGIETIAAALSEPRDAIEEIVEPYLIQNGYLQRTPRGRIL 319 Query: 320 MPIAWQHLGIDIP 332 PIA++HLG+ +P Sbjct: 320 TPIAFKHLGLAVP 332 >gi|304393329|ref|ZP_07375257.1| holliday junction DNA helicase RuvB [Ahrensia sp. R2A130] gi|303294336|gb|EFL88708.1| holliday junction DNA helicase RuvB [Ahrensia sp. R2A130] Length = 350 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 232/318 (72%), Positives = 272/318 (85%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D S+ RP L +FTGQ +A +NL VFIEAAK R EALDHVLFVGPPGLGKTTLAQ++ Sbjct: 17 EDHDASI-RPDRLSDFTGQEQARANLSVFIEAAKQRGEALDHVLFVGPPGLGKTTLAQIM 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A+ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL+ VEEILYPAMED+QL Sbjct: 76 AKELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLNPAVEEILYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRL FY + +L+ IV+R Sbjct: 136 DLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLQFYTVPELELIVRR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ G+ + D A EIA R+RGTPRIAGRLLRRVRDFA VA ITR IAD AL +L Sbjct: 196 GARIFGIGIEDAGALEIAKRARGTPRIAGRLLRRVRDFAIVAGGDKITRTIADNALNQLG 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D+LD RYL +I NFGGGPVGIETI+A LSEPRDAIED+IEPY+IQQGFIQRTP Sbjct: 256 VDPSGLDELDRRYLDVIGMNFGGGPVGIETIAASLSEPRDAIEDIIEPYLIQQGFIQRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR++ P A+ H+G+ +P Sbjct: 316 RGRMMTPRAFDHMGLAVP 333 >gi|323138238|ref|ZP_08073310.1| Holliday junction DNA helicase RuvB [Methylocystis sp. ATCC 49242] gi|322396490|gb|EFX99019.1| Holliday junction DNA helicase RuvB [Methylocystis sp. ATCC 49242] Length = 346 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 236/328 (71%), Positives = 275/328 (83%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+S +D D S RP TL +FTGQ A +NLKVFIEAAK R +ALDHVL VGPPGLG Sbjct: 8 LVSPEQRDDDTDTSF-RPLTLADFTGQEAARANLKVFIEAAKTRGDALDHVLLVGPPGLG 66 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE RDVLFIDEIHRL+ VEEILY Sbjct: 67 KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEPRDVLFIDEIHRLNPAVEEILY 126 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLDL++GEGP+ARSVKI+L++FTL+ ATTR GLLT PL+DRFGIP+RLNFY E Sbjct: 127 PAMEDFQLDLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTTPLRDRFGIPVRLNFYTAE 186 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV+RGA++ G+ + +E A EIA RSRGTPRIAGRLLRRVRDFA V A TITR++A Sbjct: 187 ELELIVRRGARVLGVGMNEEGAREIARRSRGTPRIAGRLLRRVRDFAIVEGAATITRQLA 246 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D +L L +D +G D +D RYL M+A NFGGGPVGIETI+A LSEPRDAIED+IEPY++Q Sbjct: 247 DRSLSLLEVDSIGLDIMDRRYLNMVALNFGGGPVGIETIAAALSEPRDAIEDIIEPYLLQ 306 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 QGF+QRTPRGRLL P A++HLG+ P R Sbjct: 307 QGFLQRTPRGRLLTPHAFKHLGLAEPAR 334 >gi|86751372|ref|YP_487868.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris HaA2] gi|123098275|sp|Q2IS53|RUVB_RHOP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|86574400|gb|ABD08957.1| Holliday junction DNA helicase subunit RuvB [Rhodopseudomonas palustris HaA2] Length = 348 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 231/334 (69%), Positives = 276/334 (82%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D L++ +D + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFV Sbjct: 1 MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQEKARANLQVFIDAARKRKEALDHVLFV 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQLDL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIP+RL Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPVRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY IE+L++IV RGA++ G +T + A EIA R+RGTPRIAGRLLRRVRDFA A A+ Sbjct: 181 NFYTIEELESIVSRGARVLGTGITADGANEIARRARGTPRIAGRLLRRVRDFASAADAEA 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R+IAD AL L +D G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+I Sbjct: 241 IDRKIADHALGALEVDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDII 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY+IQ G++QRTPRGRLL P A++HLG+ P R Sbjct: 301 EPYLIQCGYLQRTPRGRLLTPHAFKHLGLAEPSR 334 >gi|307944540|ref|ZP_07659880.1| holliday junction DNA helicase RuvB [Roseibium sp. TrichSKD4] gi|307772289|gb|EFO31510.1| holliday junction DNA helicase RuvB [Roseibium sp. TrichSKD4] Length = 346 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 226/334 (67%), Positives = 280/334 (83%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D + L++ + ++ D S +RP+ L+ F GQ +A +NLK+FIEAAKAR EALDHVLFV Sbjct: 1 MSDDQRLVTPEIRGDEID-STMRPQALDNFVGQAQARANLKIFIEAAKARGEALDHVLFV 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++ARELGVNFR+TSGPVIAK+GDLAALLTNLE+RDVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAQIMARELGVNFRATSGPVIAKSGDLAALLTNLEERDVLFIDEIHRLNPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL Sbjct: 120 VEEVLYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +L+ IV+RGA++ G+ + D+ A EIA RSRGTPRIAGRLLRRVRDFA V + Sbjct: 180 EFYTQPELEHIVKRGARIVGVGMADDGATEIAKRSRGTPRIAGRLLRRVRDFAIVEGVDS 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + R +AD AL +L +D G D LD RYL IARNFGGGPVGIETI+A LSEPRDAIE+++ Sbjct: 240 VDRALADKALSQLEVDAAGLDSLDRRYLNQIARNFGGGPVGIETIAAALSEPRDAIEEIV 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY+IQ GF+QRTPRGR+L +A+ HLG+ +P R Sbjct: 300 EPYLIQNGFLQRTPRGRVLTNVAFSHLGLAVPDR 333 >gi|254502080|ref|ZP_05114231.1| Holliday junction DNA helicase RuvB [Labrenzia alexandrii DFL-11] gi|222438151|gb|EEE44830.1| Holliday junction DNA helicase RuvB [Labrenzia alexandrii DFL-11] Length = 347 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 226/334 (67%), Positives = 279/334 (83%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D + ++S + ++ D S +RP+ L++F GQ +A +NLKVFI AAKAR EALDHVLFV Sbjct: 1 MSDDQRIVSPEIRGDEID-STMRPQALDDFVGQAQARANLKVFIGAAKARGEALDHVLFV 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++ARELGVNFR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAQIMARELGVNFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL Sbjct: 120 VEEVLYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY + +L+ IV+RGA + G+ + ++ A EIA RSRGTPRIAGRLLRRVRDFA A+ Sbjct: 180 EFYTVPELEHIVKRGASILGIGIAEDGALEIAKRSRGTPRIAGRLLRRVRDFAVFEGAEK 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + R +AD AL +L +D G D LD RYL IA NFGGGPVGIETI+A LSEPRDAIE+++ Sbjct: 240 VDRALADKALRQLEVDGAGLDSLDRRYLNQIAVNFGGGPVGIETIAAALSEPRDAIEEIV 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY+IQ GF+QRTPRGR+L P A+ HLG+ +P R Sbjct: 300 EPYLIQNGFLQRTPRGRILTPTAFSHLGLAVPSR 333 >gi|192289702|ref|YP_001990307.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris TIE-1] gi|238692593|sp|B3QHS4|RUVB_RHOPT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|192283451|gb|ACE99831.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris TIE-1] Length = 349 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 232/334 (69%), Positives = 275/334 (82%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D L++ +D + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFV Sbjct: 1 MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQQQARANLQVFIDAARKRKEALDHVLFV 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPS 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIPIRL Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPIRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY IE+L++IV RGA++ G +T + A EIA R+RGTPRIAGRLLRRVRDFA A A+ Sbjct: 181 NFYTIEELESIVTRGARVLGTPITADGANEIARRARGTPRIAGRLLRRVRDFASAADAEA 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R IAD AL L +D G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+I Sbjct: 241 IDRSIADHALGALEVDSAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDII 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY+IQ G++QRTPRGRLL A++HLG+ P R Sbjct: 301 EPYLIQCGYLQRTPRGRLLTDHAFRHLGLAAPSR 334 >gi|121602504|ref|YP_988487.1| Holliday junction DNA helicase B [Bartonella bacilliformis KC583] gi|166231465|sp|A1UR84|RUVB_BARBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|120614681|gb|ABM45282.1| Holliday junction DNA helicase RuvB [Bartonella bacilliformis KC583] Length = 369 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 230/318 (72%), Positives = 272/318 (85%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 +D D SL RP+ L++F GQ A +NLK+FIEAAK R EALDHVLFVGPPGLGKTTL+Q++ Sbjct: 17 DDPDRSL-RPQVLDDFIGQEAARANLKIFIEAAKTRHEALDHVLFVGPPGLGKTTLSQIM 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ +EEILYPAMED+QL Sbjct: 76 AKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IV+R Sbjct: 136 DLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVKR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A+L + ++D+ A EIA R+RGTPRIAGRLLRRV DFA V AKTI REIAD AL RL Sbjct: 196 NARLFSVPISDDGAHEIARRARGTPRIAGRLLRRVCDFALVKQAKTIDREIADTALSRLE 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D LD YL +IA F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRTP Sbjct: 256 VDHLGLDPLDRNYLMLIADVFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR++ AW HLG+ P Sbjct: 316 RGRIITEKAWAHLGLRAP 333 >gi|39934177|ref|NP_946453.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris CGA009] gi|47606089|sp|P61536|RUVB_RHOPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|39648025|emb|CAE26545.1| RuvB; Holliday branch migration protein [Rhodopseudomonas palustris CGA009] Length = 349 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 232/334 (69%), Positives = 275/334 (82%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D L++ +D + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFV Sbjct: 1 MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQQQARANLQVFIDAARKRKEALDHVLFV 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPS 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIPIRL Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPIRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY IE+L++IV RGA++ G +T + A EIA R+RGTPRIAGRLLRRVRDFA A A+ Sbjct: 181 NFYTIEELESIVTRGARVLGTPITADGANEIARRARGTPRIAGRLLRRVRDFASAADAEA 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R IAD AL L +D G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+I Sbjct: 241 IDRAIADHALGALEVDSAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDII 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY+IQ G++QRTPRGRLL A++HLG+ P R Sbjct: 301 EPYLIQCGYLQRTPRGRLLTDHAFRHLGLAAPSR 334 >gi|148258114|ref|YP_001242699.1| Holliday junction DNA helicase RuvB [Bradyrhizobium sp. BTAi1] gi|172047314|sp|A5ERJ9|RUVB_BRASB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|146410287|gb|ABQ38793.1| Holliday junction DNA helicase subunit RuvB [Bradyrhizobium sp. BTAi1] Length = 348 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 228/328 (69%), Positives = 272/328 (82%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 ++S +D + LRP+ L EF GQ +A +NL +FIEAA+ R EALDHVLFVGPPGLG Sbjct: 7 MVSPERRSDDVGDTALRPQQLSEFVGQQQARANLSIFIEAARKRGEALDHVLFVGPPGLG 66 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS VEE+LY Sbjct: 67 KTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLY 126 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLDL++GEGP+ARSVKI+L++FTL+ ATTR GLLTNPL+DRFGIPIRLNFY +E Sbjct: 127 PAMEDFQLDLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTNPLRDRFGIPIRLNFYTVE 186 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV RGA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA A+A I R IA Sbjct: 187 ELEGIVTRGARVLGVGMTADGANEIARRARGTPRIAGRLLRRVRDFASAANADAIDRAIA 246 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L +D G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ Sbjct: 247 DHALSALEVDAAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQ 306 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 G++QRTPRGRLL A++HLG+ P R Sbjct: 307 CGYLQRTPRGRLLTSHAFRHLGMAEPSR 334 >gi|27376648|ref|NP_768177.1| Holliday junction DNA helicase RuvB [Bradyrhizobium japonicum USDA 110] gi|44888479|sp|Q89U80|RUVB_BRAJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|27349789|dbj|BAC46802.1| holliday junction DNA helicase [Bradyrhizobium japonicum USDA 110] Length = 351 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/328 (68%), Positives = 273/328 (83%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 ++S +D + LRP++L +F GQ +A NL +FIEAA+ R EALDHVLFVGPPGLG Sbjct: 9 MVSPERRSDDVGDTALRPQSLSDFVGQQQARKNLSIFIEAARKRGEALDHVLFVGPPGLG 68 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VA+ELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS VEE+LY Sbjct: 69 KTTLAQIVAKELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLY 128 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLDL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIP+RLNFY IE Sbjct: 129 PAMEDFQLDLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYTIE 188 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L++IV RGA++ + ++ + A EIA R+RGTPRIAGRLLRRVRDFA A A TI R+IA Sbjct: 189 ELESIVSRGARVLNVGMSADGANEIARRARGTPRIAGRLLRRVRDFASAADADTIDRKIA 248 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L +D G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ Sbjct: 249 DHALSALEVDAAGLDAMDRRYLTTIAMNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQ 308 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 G++QRTPRGRLL A++HLG+ P+R Sbjct: 309 CGYLQRTPRGRLLTSHAFRHLGLAEPNR 336 >gi|240851224|ref|YP_002972627.1| Holliday junction DNA helicase RuvB [Bartonella grahamii as4aup] gi|240268347|gb|ACS51935.1| Holliday junction DNA helicase RuvB [Bartonella grahamii as4aup] Length = 364 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 225/311 (72%), Positives = 267/311 (85%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L++F GQ A +NLK+FIEAAK R EALDHVLFVGPPGLGKTTL+Q++A+ELGVN Sbjct: 23 LRPQVLDDFIGQEAARANLKIFIEAAKTRQEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ +EEILYPAMED+QLDL++GEG Sbjct: 83 FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLIIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IVQR A+L + Sbjct: 143 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVQRNARLFAV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++D+ A EIA R+RGTPRIAGRLLRRV DFA V AK I ++IAD AL RL +D +G D Sbjct: 203 KISDDGAHEIARRARGTPRIAGRLLRRVCDFALVKQAKQIDQKIADEALSRLEVDHLGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD RYL +IA F GGPVGIETI+A LSEPRDAIED++EPY++QQGFIQRT RGR+L Sbjct: 263 PLDRRYLLLIAETFLGGPVGIETIAAALSEPRDAIEDIVEPYLLQQGFIQRTARGRILTE 322 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 323 KAWSHLGLSAP 333 >gi|49476146|ref|YP_034187.1| Holliday junction DNA helicase B [Bartonella henselae str. Houston-1] gi|68715467|sp|Q6G5R1|RUVB_BARHE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|49238954|emb|CAF28252.1| Holliday junction DNA helicase ruvB [Bartonella henselae str. Houston-1] Length = 361 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 228/311 (73%), Positives = 269/311 (86%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L++F GQ A +NLK+FIEAAKAR EALDHVLFVGPPGLGKTTL+Q++A+ELGVN Sbjct: 23 LRPQVLDDFIGQEAARANLKIFIEAAKARQEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS +EEILYPAMED+QLDL++GEG Sbjct: 83 FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAIEEILYPAMEDYQLDLIIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IVQR A+L + Sbjct: 143 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVQRNARLFSV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++++ A EIA R+RGTPRIAGRLLRRV DFA V AK I R+IAD AL RL +D +G D Sbjct: 203 QISEDGAHEIARRARGTPRIAGRLLRRVCDFALVKRAKKIDRKIADEALSRLEVDHLGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRT RGR+L Sbjct: 263 PLDRRYLLLIAQTFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTARGRILHQ 322 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 323 KAWSHLGLCAP 333 >gi|163869136|ref|YP_001610375.1| Holliday junction DNA helicase RuvB [Bartonella tribocorum CIP 105476] gi|189045781|sp|A9IYK5|RUVB_BART1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|161018822|emb|CAK02380.1| Holliday junction DNA helicase RuvB [Bartonella tribocorum CIP 105476] Length = 363 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/311 (72%), Positives = 267/311 (85%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L++F GQ A +NLK+FIEAAK R EALDHVLFVGPPGLGKTTL+Q++A+ELGVN Sbjct: 23 LRPQVLDDFIGQEAARANLKIFIEAAKTRQEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ +EEILYPAMED+QLDL++GEG Sbjct: 83 FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLIIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IVQR A+L + Sbjct: 143 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVQRNARLFAV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++D+ A EIA R+RGTPRIAGRLLRRV DFA V AK I R+IAD AL RL +D +G D Sbjct: 203 KISDDGAHEIARRARGTPRIAGRLLRRVCDFALVKQAKQIDRKIADEALSRLEVDHLGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD RYL +IA F GGPVGIETI+A LSEPRDAIED++EPY++QQGFIQRT RGR+L Sbjct: 263 PLDRRYLLLIAETFLGGPVGIETIAAALSEPRDAIEDIVEPYLLQQGFIQRTARGRILTE 322 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 323 KAWSHLGLAAP 333 >gi|316932644|ref|YP_004107626.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris DX-1] gi|315600358|gb|ADU42893.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris DX-1] Length = 348 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 229/334 (68%), Positives = 277/334 (82%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D L++ +D + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFV Sbjct: 1 MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQQQARANLQVFIDAARKRKEALDHVLFV 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPS 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIP+RL Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPVRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY I++L++IV+RGA++ G +T++ A EIA R+RGTPRIAGRLLRRVRDFA A A+ Sbjct: 181 NFYTIDELESIVRRGARVLGTPITNDGANEIARRARGTPRIAGRLLRRVRDFASHADAEA 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R IAD AL L +D G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+I Sbjct: 241 IDRAIADHALQALEVDSAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDII 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY+IQ G++QRTPRGRLL A++HLG+ P R Sbjct: 301 EPYLIQCGYLQRTPRGRLLTDHAFRHLGLAAPSR 334 >gi|240141624|ref|YP_002966104.1| Holliday junction ATP-dependent DNA helicase [Methylobacterium extorquens AM1] gi|240011601|gb|ACS42827.1| Holliday junction ATP-dependent DNA helicase [Methylobacterium extorquens AM1] Length = 356 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 231/328 (70%), Positives = 276/328 (84%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 LLS +DAD S+ RP +L EF GQ A +N+++FIE+AK +ALDHVLFVGPPGLG Sbjct: 13 LLSPERRPDDADQSI-RPLSLSEFIGQRAARANMQIFIESAKKTGQALDHVLFVGPPGLG 71 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+ VEEILY Sbjct: 72 KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILY 131 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED+QLDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI+ Sbjct: 132 PAMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEID 191 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV+RGA++ GL +++E A EIA R+RGTPRIAGRLLRRVRDFA V A T+TR IA Sbjct: 192 ELELIVRRGARVLGLGMSEEGANEIAKRARGTPRIAGRLLRRVRDFAIVEDATTVTRAIA 251 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L +D +G D +D +YLT+IA +FGGGPVGIETI+A LSEPRDAIED+IEPY+IQ Sbjct: 252 DRALQMLDVDPVGLDVMDRKYLTLIAASFGGGPVGIETIAAALSEPRDAIEDIIEPYLIQ 311 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 +GF+QRTPRGR+L P A++H+G P R Sbjct: 312 KGFVQRTPRGRVLTPHAFRHMGFAEPRR 339 >gi|163854164|ref|YP_001642207.1| Holliday junction DNA helicase B [Methylobacterium extorquens PA1] gi|218533109|ref|YP_002423925.1| Holliday junction DNA helicase RuvB [Methylobacterium chloromethanicum CM4] gi|254564131|ref|YP_003071226.1| Holliday junction ATP-dependent DNA helicase [Methylobacterium extorquens DM4] gi|163665769|gb|ABY33136.1| Holliday junction DNA helicase RuvB [Methylobacterium extorquens PA1] gi|218525412|gb|ACK85997.1| Holliday junction DNA helicase RuvB [Methylobacterium chloromethanicum CM4] gi|254271409|emb|CAX27422.1| Holliday junction ATP-dependent DNA helicase [Methylobacterium extorquens DM4] Length = 356 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 231/328 (70%), Positives = 276/328 (84%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 LLS +DAD S+ RP +L EF GQ A +N+++FIEAAK +ALDHVLFVGPPGLG Sbjct: 13 LLSPERRPDDADQSI-RPLSLSEFIGQRAARANMQIFIEAAKKTGQALDHVLFVGPPGLG 71 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+ VEEILY Sbjct: 72 KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILY 131 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED+QLDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI+ Sbjct: 132 PAMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEID 191 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV+RGA++ GL +++E A EIA R+RGTPRIAGRLLRRVRDFA V A T++R IA Sbjct: 192 ELELIVRRGARVLGLGMSEEGANEIAKRARGTPRIAGRLLRRVRDFAIVEDATTVSRAIA 251 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L +D +G D +D +YLT+IA +FGGGPVGIETI+A LSEPRDAIED+IEPY+IQ Sbjct: 252 DRALQMLDVDPVGLDVMDRKYLTLIAASFGGGPVGIETIAAALSEPRDAIEDIIEPYLIQ 311 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 +GF+QRTPRGR+L P A++H+G P R Sbjct: 312 KGFVQRTPRGRVLTPHAFRHMGFAEPRR 339 >gi|49474676|ref|YP_032718.1| Holliday junction DNA helicase B [Bartonella quintana str. Toulouse] gi|68715463|sp|Q6FYP6|RUVB_BARQU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|49240180|emb|CAF26646.1| Holliday junction DNA helicase ruvB [Bartonella quintana str. Toulouse] Length = 361 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/311 (72%), Positives = 268/311 (86%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L++F GQ A +NLK+FIEAAKAR EALDHVLFVGPPGLGKTTL+Q++A+ELGVN Sbjct: 20 LRPQVLDDFIGQEAARANLKIFIEAAKARQEALDHVLFVGPPGLGKTTLSQIMAKELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FRSTSGPVIAK+GDLAALLTNLE+RDVLFIDEIHRL+ +EEILYPAMED+QLDL++GEG Sbjct: 80 FRSTSGPVIAKSGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLILGEG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IVQR A+L + Sbjct: 140 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVQRNARLFSV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++D+ A EIA R+RGTPRIAGRLLRRV DFA V AK I R++AD AL RL +D +G D Sbjct: 200 QISDDGAHEIARRARGTPRIAGRLLRRVCDFALVKRAKKIDRKVADEALSRLEVDHLGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD RYL +IA F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRT RGR+L Sbjct: 260 PLDRRYLLLIAETFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTARGRILRE 319 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 320 KAWNHLGLCAP 330 >gi|188584493|ref|YP_001927938.1| Holliday junction DNA helicase RuvB [Methylobacterium populi BJ001] gi|179347991|gb|ACB83403.1| Holliday junction DNA helicase RuvB [Methylobacterium populi BJ001] Length = 388 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 229/328 (69%), Positives = 276/328 (84%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 LL+ +D D S+ RP +L EF GQ A +N+++FIEAAK +ALDHVLFVGPPGLG Sbjct: 45 LLNPERRADDVDQSI-RPLSLAEFIGQRAARANMQIFIEAAKKTGQALDHVLFVGPPGLG 103 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+ VEEILY Sbjct: 104 KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILY 163 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED+QLDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI+ Sbjct: 164 PAMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEID 223 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV+RGA++ GL +++E A EIA R+RGTPRIAGRLLRRVRDFA V A+T++R IA Sbjct: 224 ELELIVRRGARVLGLGMSEEGANEIAKRARGTPRIAGRLLRRVRDFAIVEDAQTVSRAIA 283 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L +D +G D +D +YLT+IA +FGGGPVGIETI+A LSEPRDAIED+IEPY+IQ Sbjct: 284 DRALQMLDVDPVGLDVMDRKYLTLIAASFGGGPVGIETIAAALSEPRDAIEDIIEPYLIQ 343 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 +GF+QRTPRGR+L P A++H+G P R Sbjct: 344 KGFVQRTPRGRVLTPHAFRHMGFAEPRR 371 >gi|217977801|ref|YP_002361948.1| Holliday junction DNA helicase RuvB [Methylocella silvestris BL2] gi|254767432|sp|B8EK46|RUVB_METSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|217503177|gb|ACK50586.1| Holliday junction DNA helicase RuvB [Methylocella silvestris BL2] Length = 348 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 232/328 (70%), Positives = 274/328 (83%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L++ + ++DA++SL RP L +FTGQ A +NLKVFIEAAKAR EALDHVLF GPPGLG Sbjct: 8 LIAPDAREDDAELSL-RPLALADFTGQASARANLKVFIEAAKARREALDHVLFWGPPGLG 66 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LT LEDRDVLFIDEIHRL+ VEEILY Sbjct: 67 KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTGLEDRDVLFIDEIHRLNPAVEEILY 126 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLDL++GEGP ARSVKI+L++FTLI ATTR GLLT PL+DRFGIPIRL +Y +E Sbjct: 127 PAMEDFQLDLIIGEGPGARSVKIDLAKFTLIGATTRAGLLTTPLRDRFGIPIRLEYYTVE 186 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV+RGA++ + + DE A EIA R+RGTPRIAGRLLRRVRDFA V ITR +A Sbjct: 187 ELECIVRRGARVLSIPIADEGANEIARRARGTPRIAGRLLRRVRDFAAVDGDPEITRAVA 246 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L +D +G DQ+D R+L IA +FGGGPVG+ETI+A LSEPRDAIED+IEPY+IQ Sbjct: 247 DRALRLLDVDHIGLDQMDRRFLQTIALSFGGGPVGVETIAAALSEPRDAIEDIIEPYLIQ 306 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 QGF+QRTPRGR+L A++HLG+ P R Sbjct: 307 QGFLQRTPRGRMLTSHAFRHLGLAEPPR 334 >gi|298293001|ref|YP_003694940.1| Holliday junction DNA helicase RuvB [Starkeya novella DSM 506] gi|296929512|gb|ADH90321.1| Holliday junction DNA helicase RuvB [Starkeya novella DSM 506] Length = 345 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 225/331 (67%), Positives = 276/331 (83%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M+ + L++ + +ED + LRP+TL EF GQ +A +NL VFI+AAK R EALDHVLFVG Sbjct: 1 MNTKRLVTPDKREEDLAEASLRPQTLAEFVGQEQARANLDVFIKAAKTRGEALDHVLFVG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ V Sbjct: 61 PPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMED++LDL++GEGP+ARSVKI LS+FTL+ ATTR GLLT PL+DRFGIPIRLN Sbjct: 121 EEILYPAMEDYELDLIIGEGPAARSVKIQLSKFTLVGATTRSGLLTTPLRDRFGIPIRLN 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY +++L+ +V RGA++ G+ + + A EIA R+RGTPRIAGRLLRRVRDFA VA I Sbjct: 181 FYTVDELELVVTRGARVLGIPIAKDGAREIARRARGTPRIAGRLLRRVRDFALVAGKDVI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 R AD AL L +D G DQ+D RYL++IA N+GGGPVG+ETI+A LSEPRDAIE++IE Sbjct: 241 DRAAADHALGHLEVDGAGLDQMDRRYLSVIAMNYGGGPVGVETIAAALSEPRDAIEEIIE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY++QQGF+QRTPRGR+L A++HLG+ +P Sbjct: 301 PYLVQQGFLQRTPRGRMLTAHAFKHLGLAVP 331 >gi|319899377|ref|YP_004159474.1| Holliday junction DNA helicase RuvB [Bartonella clarridgeiae 73] gi|319403345|emb|CBI76904.1| Holliday junction DNA helicase RuvB [Bartonella clarridgeiae 73] Length = 364 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 224/313 (71%), Positives = 267/313 (85%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL++F GQ A +NLK+FIEAA+ R EALDHVLFVGPPGLGKTTL+Q++A+ELGVN Sbjct: 23 LRPQTLDDFIGQEAARANLKIFIEAARTRHEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ +EEILYPAMED+QLDL++GEG Sbjct: 83 FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLIIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY I++L+ IVQR A+L + Sbjct: 143 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIDELEHIVQRNARLFSV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+ A EIA RSRGTPRI GRLLRRV DFA V A+ I R +AD AL RL +D +G D Sbjct: 203 QINDDGAHEIARRSRGTPRIVGRLLRRVCDFALVKKAEKIDRALADEALSRLEVDHLGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRT RGR+L Sbjct: 263 SLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTARGRILTE 322 Query: 322 IAWQHLGIDIPHR 334 AW HLG+ P + Sbjct: 323 KAWTHLGLCSPTK 335 >gi|220920765|ref|YP_002496066.1| Holliday junction DNA helicase RuvB [Methylobacterium nodulans ORS 2060] gi|219945371|gb|ACL55763.1| Holliday junction DNA helicase RuvB [Methylobacterium nodulans ORS 2060] Length = 348 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 228/334 (68%), Positives = 278/334 (83%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M LL+ ++D D S+ RP +L +FTGQ A +NL+VFIE+A+ +ALDHVLFV Sbjct: 1 MSKPRALLTPERREDDIDASI-RPLSLADFTGQRAARANLQVFIESARKTGQALDHVLFV 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMED+QLDL++GEGP+ARSVKI L +FTL+AATTR GLLT PL+DRFGIPIRL Sbjct: 120 VEEILYPAMEDYQLDLIIGEGPAARSVKIELPKFTLVAATTRAGLLTTPLRDRFGIPIRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FYEI++L+ IV RGA++ G+ + + A EIA R+RGTPRIAGRLLRRVRDFA V A T Sbjct: 180 EFYEIDELEAIVARGARVLGIGMAPDGANEIAKRARGTPRIAGRLLRRVRDFAIVEDAPT 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +TR IAD AL L +D +G D +D +YL +IAR+FGGGPVG+ET++A LSEPRDAIE++I Sbjct: 240 VTRAIADKALRLLDVDPVGLDTMDRKYLGLIARSFGGGPVGVETMAAALSEPRDAIEEII 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY+IQ+GF+QRTPRGR+L P A++HLG+ P+R Sbjct: 300 EPYLIQKGFVQRTPRGRVLTPHAFRHLGLPEPNR 333 >gi|319404770|emb|CBI78371.1| Holliday junction DNA helicase RuvB [Bartonella rochalimae ATCC BAA-1498] Length = 360 Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust. Identities = 226/311 (72%), Positives = 267/311 (85%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL++F GQ A +NLK+FIEAA+ R EALDHVLFVGPPGLGKTTL+Q++A+ELGVN Sbjct: 23 LRPQTLDDFIGQEAARANLKIFIEAARTRHEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ +EEILYPAMED+QLDL++GEG Sbjct: 83 FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLIIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IVQR A+L + Sbjct: 143 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVQRNARLFSV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++D+ A EIA RSRGTPRIAGRLLRRV DFA V A+ I IADAAL RL +D +G D Sbjct: 203 QISDDGAHEIARRSRGTPRIAGRLLRRVCDFALVKKAEKIDHTIADAALSRLEVDHLGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRT RGR+L Sbjct: 263 PLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTARGRILTE 322 Query: 322 IAWQHLGIDIP 332 AW HL + P Sbjct: 323 KAWTHLRLCPP 333 >gi|209886411|ref|YP_002290268.1| holliday junction DNA helicase RuvB [Oligotropha carboxidovorans OM5] gi|209874607|gb|ACI94403.1| holliday junction DNA helicase RuvB [Oligotropha carboxidovorans OM5] Length = 346 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 227/334 (67%), Positives = 274/334 (82%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D + S + + D SL RP+ L EF GQ +A +NL VFIEAA+ R EALDHVLFV Sbjct: 1 MTDSRLVTSERRADDIGDASL-RPQNLSEFVGQAQARANLSVFIEAARKRNEALDHVLFV 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ+V+RELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 60 GPPGLGKTTLAQIVSRELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+ ATTR GLLTNPL+DRFGIP+RL Sbjct: 120 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTNPLRDRFGIPLRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY ++L+ IV RGA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA A+ Sbjct: 180 NFYTEDELEKIVTRGARVLGVGMTADGANEIARRARGTPRIAGRLLRRVRDFASALDAEA 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R++AD AL L +DK G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+I Sbjct: 240 IDRKVADHALGALEVDKAGLDAMDRRYLSTIALNYGGGPVGVETLAAALSEPRDAIEDII 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY+IQ G++QRTPRGRLL A++HLG+ P R Sbjct: 300 EPYLIQCGYLQRTPRGRLLTSHAFKHLGLAEPSR 333 >gi|319407734|emb|CBI81381.1| Holliday junction DNA helicase RuvB [Bartonella sp. 1-1C] Length = 360 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 231/330 (70%), Positives = 274/330 (83%), Gaps = 1/330 (0%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 D + LL D D SL RP+TL++F GQ A +NLK+FIEAA+ R EALDHVLFVGP Sbjct: 5 DSQRLLGSIPLPNDPDRSL-RPQTLDDFIGQEAARANLKIFIEAARTRHEALDHVLFVGP 63 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTL+Q++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ +E Sbjct: 64 PGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIE 123 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 EILYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNF Sbjct: 124 EILYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNF 183 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y IE+L+ IVQR A+L + ++D+ A EIA RSRGTPRIAGRLLRRV DFA V A+ I Sbjct: 184 YTIEELEYIVQRNARLFSVQISDDGAHEIARRSRGTPRIAGRLLRRVCDFALVKKAEKID 243 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 +IAD AL RL +D +G D LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEP Sbjct: 244 HKIADEALSRLEVDHLGLDPLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEP 303 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Y++QQGFIQRT RGR+L AW HL + P Sbjct: 304 YLLQQGFIQRTARGRILTEKAWTHLRLCPP 333 >gi|170739411|ref|YP_001768066.1| Holliday junction DNA helicase RuvB [Methylobacterium sp. 4-46] gi|168193685|gb|ACA15632.1| Holliday junction DNA helicase RuvB [Methylobacterium sp. 4-46] Length = 348 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 230/334 (68%), Positives = 275/334 (82%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M + LL+ ++D D S+ RP +L +FTGQ A +NL VFIEAA+ +ALDHVLFV Sbjct: 1 MSNPRPLLTPERREDDIDASI-RPLSLSDFTGQRAARANLGVFIEAARRTGQALDHVLFV 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRLS Sbjct: 60 GPPGLGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLSPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMED+QLDL++GEGP+ARSVKI L RFTL+AATTR GLLT PL+DRFGIPIRL Sbjct: 120 VEEILYPAMEDYQLDLIIGEGPAARSVKIELPRFTLVAATTRAGLLTTPLRDRFGIPIRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +++L+ IV RGA++ G+ + + A EIA R+RGTPRIAGRLLRRVRDFA V A T Sbjct: 180 EFYAVDELEAIVARGARVLGIGMAADGANEIARRARGTPRIAGRLLRRVRDFAIVEEAGT 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +TR IAD AL L +D G D +D +YL +IAR++GGGPVG+ETI+A LSEPRDAIE++I Sbjct: 240 VTRAIADRALRLLDVDAAGLDTMDRKYLGLIARSYGGGPVGVETIAAALSEPRDAIEEII 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY++QQGF+QRTPRGRLL P A++HLG+ P R Sbjct: 300 EPYLLQQGFVQRTPRGRLLTPHAFRHLGLPEPSR 333 >gi|170750825|ref|YP_001757085.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans JCM 2831] gi|170657347|gb|ACB26402.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans JCM 2831] Length = 344 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 226/312 (72%), Positives = 265/312 (84%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L EF GQ A +N++VFIEAAK +ALDHVLFVGPPGLGKTTLAQ+VARELGVN Sbjct: 27 IRPLSLSEFIGQRAARANMQVFIEAAKKTGQALDHVLFVGPPGLGKTTLAQIVARELGVN 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+ VEEILYPAMED+QLDL++GEG Sbjct: 87 FRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDYQLDLIIGEG 146 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI++L+ IV RGA++ GL Sbjct: 147 PAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEIDELEQIVARGARVLGL 206 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ E A EIA R+RGTPRIAGRLLRRVRDFA VA A+T+TR IAD AL L +D G D Sbjct: 207 GMSAEGANEIARRARGTPRIAGRLLRRVRDFAVVAEAETVTRAIADRALQLLDVDGAGLD 266 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D +YL++IAR FGGGPVGIETI A LSEPRDAIED+IEPY+IQ+GF+QRTPRGR+L Sbjct: 267 VMDRKYLSLIARAFGGGPVGIETIGAALSEPRDAIEDIIEPYLIQRGFVQRTPRGRVLTR 326 Query: 322 IAWQHLGIDIPH 333 A++HLG+ P Sbjct: 327 HAYRHLGLPEPE 338 >gi|158422143|ref|YP_001523435.1| Holliday junction DNA helicase RuvB [Azorhizobium caulinodans ORS 571] gi|172048037|sp|A8IMA7|RUVB_AZOC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|158329032|dbj|BAF86517.1| holliday junction DNA helicase [Azorhizobium caulinodans ORS 571] Length = 350 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/328 (67%), Positives = 277/328 (84%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L++ + ED + LRP+ L +F GQ +A +NL+VFI+AA+AR EALDHVLFVGPPGLG Sbjct: 11 LMTADSRPEDDADATLRPQRLADFVGQAQARANLEVFIQAARARGEALDHVLFVGPPGLG 70 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ++ARE+GV FRSTSGPVIAKAGDLAA+LTNLE+RDVLFIDEIHRL+ VEEILY Sbjct: 71 KTTLAQIMAREMGVGFRSTSGPVIAKAGDLAAILTNLEERDVLFIDEIHRLAPQVEEILY 130 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED++LDL++GEGP+ARSVKI+L +FTL+ ATTR GLLT PL+DRFGIP+RL FY +E Sbjct: 131 PAMEDYELDLVIGEGPAARSVKISLPKFTLVGATTRSGLLTTPLRDRFGIPVRLVFYTLE 190 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV RGA+L G+ + E A EIA R+RGTPRIAGRLLRRVRDFA+ A A+ I R IA Sbjct: 191 ELEYIVTRGARLLGIGIVPEGAREIARRARGTPRIAGRLLRRVRDFAQFAGAEAIDRAIA 250 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL+ L +D MG D +D RYLT+IA+++GGGPVG+ET++A LSEPRDAIE+++EPY++Q Sbjct: 251 DRALMALDVDAMGLDTMDRRYLTVIAQHYGGGPVGVETLAAALSEPRDAIEEIVEPYLVQ 310 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 QGF+QRTPRGR+L A++HLG+ P R Sbjct: 311 QGFVQRTPRGRMLTSGAFRHLGLAEPQR 338 >gi|319406257|emb|CBI79894.1| Holliday junction DNA helicase RuvB [Bartonella sp. AR 15-3] Length = 360 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 225/311 (72%), Positives = 265/311 (85%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL++F GQ A +NLK+FIEAA+ R EALDHVLFVGPPGLGKTTL+Q++A+ELGVN Sbjct: 23 LRPQTLDDFIGQEAARANLKIFIEAARTRHEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ +EEILYPAMED+QLDL++GEG Sbjct: 83 FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLIIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IVQR A+L + Sbjct: 143 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVQRNARLFSV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+ A EIA RSRGTPRIAGRLLRRV DFA V A+ I IAD AL RL +D +G D Sbjct: 203 QINDDGAHEIARRSRGTPRIAGRLLRRVCDFALVKKAEKIDHTIADEALSRLEVDHLGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRT RGR+L Sbjct: 263 PLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTARGRILTE 322 Query: 322 IAWQHLGIDIP 332 AW HL + P Sbjct: 323 KAWTHLKLCPP 333 >gi|154246998|ref|YP_001417956.1| Holliday junction DNA helicase RuvB [Xanthobacter autotrophicus Py2] gi|154161083|gb|ABS68299.1| Holliday junction DNA helicase RuvB [Xanthobacter autotrophicus Py2] Length = 343 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 222/326 (68%), Positives = 275/326 (84%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 LLS EDA S LRP+ L+EF GQ +A +NL+VFI+AA+AR EALDHVLFVGPPGLG Sbjct: 5 LLSGEKRGEDAADSTLRPQLLKEFVGQAQARANLEVFIKAARARGEALDHVLFVGPPGLG 64 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+++RE+GV FRSTSGPVIAKAGDLAA+LTNLE+RDVLFIDEIHRL+ VEEILY Sbjct: 65 KTTLAQIMSREMGVGFRSTSGPVIAKAGDLAAILTNLEERDVLFIDEIHRLAPAVEEILY 124 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED++LDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIP+RL FY +E Sbjct: 125 PAMEDYELDLVIGEGPAARSVKIALPKFTLVGATTRSGLLTTPLRDRFGIPVRLQFYTVE 184 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV RGA++ G+A+ + A EIA R+RGTPRIAGRLLRRVRDFA VA A+ I R++A Sbjct: 185 ELEKIVVRGARVLGIAIAPDGATEIARRARGTPRIAGRLLRRVRDFALVAEAERIDRKVA 244 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D ALL L +D G D +D RYLT+IA +GGGPVG++T++A LSEPRDAIE+++EP+++Q Sbjct: 245 DRALLALEVDAAGLDAMDRRYLTVIADYYGGGPVGVDTLAAALSEPRDAIEEIVEPFLVQ 304 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332 QGFIQRTPRGR+L A++HLG+ P Sbjct: 305 QGFIQRTPRGRMLTATAFRHLGLPEP 330 >gi|170747185|ref|YP_001753445.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans JCM 2831] gi|170653707|gb|ACB22762.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans JCM 2831] Length = 351 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 230/328 (70%), Positives = 271/328 (82%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 LL+ +D D +RP +L EF GQ A +N++VFIEAAK +ALDHVLFVGPPGLG Sbjct: 11 LLTPEKRTDDVD-QTIRPLSLSEFIGQRAARANMQVFIEAAKKTGQALDHVLFVGPPGLG 69 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+ VEEILY Sbjct: 70 KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILY 129 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED+QLDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI+ Sbjct: 130 PAMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEID 189 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV RGA++ GL ++ E A EIA R+RGTPRIAGRLLRRVRDFA VA A+T+TR IA Sbjct: 190 ELEQIVARGARVLGLGMSAEGANEIARRARGTPRIAGRLLRRVRDFAVVAEAETVTRAIA 249 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L +D G D +D +YL++IAR FGGGPVGIETI A LSEPRDAIED+IEPY+IQ Sbjct: 250 DRALQLLDVDGAGLDVMDRKYLSLIARAFGGGPVGIETIGAALSEPRDAIEDIIEPYLIQ 309 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 +GF+QRTPRGR+L A++H+ I P R Sbjct: 310 RGFVQRTPRGRVLTRHAYRHMQIPEPTR 337 >gi|319409332|emb|CBI82976.1| Holliday junction DNA helicase RuvB [Bartonella schoenbuchensis R1] Length = 363 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 224/312 (71%), Positives = 267/312 (85%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L++F GQ A +NLK+FIEAAKAR EALDHVLFVGPPGLGKTTL+Q++A+ELGVN Sbjct: 23 LRPQVLDDFIGQEAARANLKIFIEAAKARQEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ +EEILYPAMED+QLDL++GEG Sbjct: 83 FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLIIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI L++FTL+AATTR+GLLT PL+DRFGIPIRL+FY IE+L+ IV+R A+L + Sbjct: 143 PAARSVKIELAKFTLVAATTRLGLLTTPLRDRFGIPIRLSFYTIEELEYIVKRNARLFSV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++D+ A EIA R+RGTPRIAGRLLRRV DFA V A+ I R IAD AL RL +D +G D Sbjct: 203 QISDDGAHEIACRARGTPRIAGRLLRRVCDFALVKGAEKIDRFIADEALSRLEVDHLGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRT RGR++ Sbjct: 263 PLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTARGRIITE 322 Query: 322 IAWQHLGIDIPH 333 AW HLG+ P Sbjct: 323 KAWAHLGLCPPE 334 >gi|90426274|ref|YP_534644.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris BisB18] gi|123274758|sp|Q20X11|RUVB_RHOPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|90108288|gb|ABD90325.1| Holliday junction DNA helicase subunit RuvB [Rhodopseudomonas palustris BisB18] Length = 349 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 222/320 (69%), Positives = 266/320 (83%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 +D + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V Sbjct: 15 DDVGDTALRPQLLSEFVGQQQARANLQIFIDAARKRGEALDHVLFVGPPGLGKTTLAQIV 74 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS VEE+LYPAMEDFQL Sbjct: 75 ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 134 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIP+RLNFY I +L++IV R Sbjct: 135 DLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYTIAELESIVTR 194 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ + +T + A EIA R+RGTPRIAGRLLRRVRDFA A I R IAD AL L Sbjct: 195 GARVLSIGITPDGANEIARRARGTPRIAGRLLRRVRDFASAADKSAIDRGIADHALSALE 254 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEP++IQ G++QRTP Sbjct: 255 VDAAGLDAMDRRYLSTIAMNYGGGPVGVETMAAALSEPRDAIEDIIEPFLIQCGYLQRTP 314 Query: 315 RGRLLMPIAWQHLGIDIPHR 334 RGRLL A++HLG+ P R Sbjct: 315 RGRLLTSHAFKHLGLAEPAR 334 >gi|170741944|ref|YP_001770599.1| Holliday junction DNA helicase RuvB [Methylobacterium sp. 4-46] gi|168196218|gb|ACA18165.1| Holliday junction DNA helicase RuvB [Methylobacterium sp. 4-46] Length = 359 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/313 (71%), Positives = 266/313 (84%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L +FTGQ A +NL VFIEAA+ +ALDHVLFVGPPGLGKTTLAQ+VARELGVN Sbjct: 36 IRPLSLSDFTGQRAARANLGVFIEAARRTGQALDHVLFVGPPGLGKTTLAQIVARELGVN 95 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+ VEEILYPAMED+QLDL++GEG Sbjct: 96 FRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDYQLDLIIGEG 155 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI L RFTL+AATTR GLLT PL+DRFGIPIRL FY +++L+ IV RGA++ G+ Sbjct: 156 PAARSVKIELPRFTLVAATTRAGLLTTPLRDRFGIPIRLEFYAVDELEAIVARGARVLGI 215 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIAGRLLRRVRDFA V A T+TR IAD AL L +D G D Sbjct: 216 GMAADGANEIARRARGTPRIAGRLLRRVRDFAIVEEAGTVTRAIADRALRLLDVDAAGLD 275 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D +YL +IAR++GGGPVG+ETI+A LSEPRDAIE++IEPY++QQGF+QRTPRGRLL P Sbjct: 276 TMDRKYLGLIARSYGGGPVGVETIAAALSEPRDAIEEIIEPYLLQQGFVQRTPRGRLLTP 335 Query: 322 IAWQHLGIDIPHR 334 A++HLG+ +P R Sbjct: 336 HAFRHLGLPVPVR 348 >gi|146338243|ref|YP_001203291.1| Holliday junction DNA helicase RuvB [Bradyrhizobium sp. ORS278] gi|172046978|sp|A4YMC8|RUVB_BRASO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|146191049|emb|CAL75054.1| Holliday junction DNA helicase ruvB [Bradyrhizobium sp. ORS278] Length = 348 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 227/326 (69%), Positives = 270/326 (82%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 ++S +D + LRP+ L EF GQ +A +NL +FIEAA+ R EALDHVLFVGPPGLG Sbjct: 7 MVSPERRSDDVGDTALRPQQLSEFVGQQQARANLSIFIEAARKRGEALDHVLFVGPPGLG 66 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS VEE+LY Sbjct: 67 KTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLY 126 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIPIRLNFY +E Sbjct: 127 PAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPIRLNFYTVE 186 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV RGA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA A A I R IA Sbjct: 187 ELEGIVTRGARVLGIGMTPDGANEIARRARGTPRIAGRLLRRVRDFASAADASAIDRAIA 246 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L +D G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ Sbjct: 247 DHALSALEVDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQ 306 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332 G++QRTPRGRLL A++HLG+ P Sbjct: 307 CGYLQRTPRGRLLTSHAFKHLGMAEP 332 >gi|154252564|ref|YP_001413388.1| Holliday junction DNA helicase RuvB [Parvibaculum lavamentivorans DS-1] gi|171769604|sp|A7HUZ8|RUVB_PARL1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|154156514|gb|ABS63731.1| Holliday junction DNA helicase RuvB [Parvibaculum lavamentivorans DS-1] Length = 352 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/319 (69%), Positives = 262/319 (82%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +ED LRP+ L +F GQ A NL VFIEAA+ RAEALDHVLF GPPGLGKTTLAQ+ Sbjct: 12 EEDELERSLRPQVLSDFVGQARARENLAVFIEAARTRAEALDHVLFAGPPGLGKTTLAQI 71 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VARELGVNFR+TSGPVI+KAGDLAALLTNLE RDVLFIDEIHRLS VEEILYPAMEDFQ Sbjct: 72 VARELGVNFRATSGPVISKAGDLAALLTNLEPRDVLFIDEIHRLSPAVEEILYPAMEDFQ 131 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LDL++GEGP ARSV+I L+ FTLI ATTR GLLT PL+DRFGIP+RL+FYE+ +L+ IV+ Sbjct: 132 LDLIIGEGPGARSVRIELAPFTLIGATTRTGLLTTPLRDRFGIPVRLHFYEVAELEGIVR 191 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 RGA + G+A+T + A EIA R+RGTPR+AGRLLRRVRDFA V K+I + AD AL RL Sbjct: 192 RGASVLGVAMTPDGAHEIARRARGTPRVAGRLLRRVRDFASVEGVKSIDAKAADKALQRL 251 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D++G D LD RYL IA +F GGPVG+ETI+A LSEPRDAIE++IEPY+IQQG + RT Sbjct: 252 EVDELGLDALDHRYLRCIAVSFSGGPVGVETIAASLSEPRDAIEEIIEPYLIQQGLVNRT 311 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR L P A+ H+G+ +P Sbjct: 312 PRGRTLTPAAFAHIGVALP 330 >gi|296445133|ref|ZP_06887093.1| Holliday junction DNA helicase RuvB [Methylosinus trichosporium OB3b] gi|296257307|gb|EFH04374.1| Holliday junction DNA helicase RuvB [Methylosinus trichosporium OB3b] Length = 349 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 234/328 (71%), Positives = 277/328 (84%), Gaps = 2/328 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L++ +D D SL RP +L +FTGQ A NLK+FIEAAK R EALDHVLFVGPPGLG Sbjct: 8 LVTPEQRDDDPDASL-RPLSLGDFTGQEAARKNLKIFIEAAKTRGEALDHVLFVGPPGLG 66 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE RDVLFIDEIHRL+ VEEILY Sbjct: 67 KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEPRDVLFIDEIHRLNPAVEEILY 126 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLDL++GEGP+ARSVKI+L++FTL+ ATTR GLLT PL+DRFGIP+RLNFY E Sbjct: 127 PAMEDFQLDLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTTPLRDRFGIPVRLNFYTAE 186 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV+RGA++ G+A+ ++ A EIA R+RGTPRIAGRLLRRVRDFA V +++ ITR +A Sbjct: 187 ELELIVRRGARVLGVAMQEDGAREIARRARGTPRIAGRLLRRVRDFAIVENSE-ITRALA 245 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L +D +G D +D RYL M+A NFGGGPVGIETI+A LSEPRDAIED+IEPY++Q Sbjct: 246 DRALALLEVDSIGLDVMDRRYLEMVAVNFGGGPVGIETIAAALSEPRDAIEDIIEPYLLQ 305 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 QGF+QRTPRGRLL P A++HLG+ P R Sbjct: 306 QGFLQRTPRGRLLTPHAFRHLGLAEPAR 333 >gi|312114823|ref|YP_004012419.1| Holliday junction DNA helicase RuvB [Rhodomicrobium vannielii ATCC 17100] gi|311219952|gb|ADP71320.1| Holliday junction DNA helicase RuvB [Rhodomicrobium vannielii ATCC 17100] Length = 347 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/327 (67%), Positives = 268/327 (81%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 LL R EDA LRP+ L EF GQ +A +N+KVFI+AA+AR EALDHVLF GPPGLG Sbjct: 5 LLDRERQDEDAGELSLRPQRLAEFIGQAQARANMKVFIDAARARGEALDHVLFAGPPGLG 64 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VARELGVNF+ TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL+ VEEILY Sbjct: 65 KTTLAQIVARELGVNFKMTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLNPAVEEILY 124 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLDL++GEGP+ARSV+I+L++FTL+ ATTR GLLT PL+DRFGIPIRLNFY + Sbjct: 125 PAMEDFQLDLIIGEGPAARSVRIDLAKFTLVGATTRTGLLTTPLRDRFGIPIRLNFYTDD 184 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV+RGA++ + +T + A E+A RSRGTPR+AGRLLRRVRDFA V + R +A Sbjct: 185 ELEEIVRRGARVLHMTMTADGAREVARRSRGTPRVAGRLLRRVRDFAAVGGVDEVDRAVA 244 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 DAAL +L +D +G D +D RYL I N+GGGPVGIETI+A LSE +DAIE++IEPY++Q Sbjct: 245 DAALGKLEVDSLGLDAMDHRYLRCIGVNYGGGPVGIETIAAALSEGKDAIEEVIEPYLLQ 304 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 QGFI RTPRGR+L A++HLG+ P Sbjct: 305 QGFIGRTPRGRVLTLKAFRHLGLAAPQ 331 >gi|85714393|ref|ZP_01045381.1| Holliday junction DNA helicase RuvB [Nitrobacter sp. Nb-311A] gi|85698840|gb|EAQ36709.1| Holliday junction DNA helicase RuvB [Nitrobacter sp. Nb-311A] Length = 349 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 224/320 (70%), Positives = 269/320 (84%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 +D + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V Sbjct: 15 DDVGDTALRPQKLSEFVGQRQARANLQIFIDAARKRKEALDHVLFVGPPGLGKTTLAQIV 74 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS VEE+LYPAMEDFQL Sbjct: 75 ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 134 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI L++FTL+ ATTR GLLTNPL+DRFGIP+RLNFY ++L+ IV R Sbjct: 135 DLIIGEGPAARSVKIELAKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYTEDELEKIVSR 194 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA A A +I R+IAD AL L Sbjct: 195 GARVLGVGMTADGANEIARRARGTPRIAGRLLRRVRDFASAADAASIDRKIADHALGALE 254 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ G++QRTP Sbjct: 255 VDAAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTP 314 Query: 315 RGRLLMPIAWQHLGIDIPHR 334 RGRLL A++HLG+ P R Sbjct: 315 RGRLLTSHAFRHLGLAEPTR 334 >gi|91978628|ref|YP_571287.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris BisB5] gi|91685084|gb|ABE41386.1| Holliday junction DNA helicase subunit RuvB [Rhodopseudomonas palustris BisB5] Length = 360 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 226/320 (70%), Positives = 271/320 (84%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 +D + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V Sbjct: 26 DDLGDAALRPQHLSEFVGQQQARANLQIFIDAARKRKEALDHVLFVGPPGLGKTTLAQIV 85 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS VEE+LYPAMEDFQL Sbjct: 86 ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 145 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIP+RLNFY IE+L++IV+R Sbjct: 146 DLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYTIEELESIVKR 205 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ G +T + A EIA R+RGTPRIAGRLLRRVRDFA A A I R+IAD AL L Sbjct: 206 GARVLGTGITADGANEIARRARGTPRIAGRLLRRVRDFASAADADAIDRKIADHALGALE 265 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ G++QRTP Sbjct: 266 VDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTP 325 Query: 315 RGRLLMPIAWQHLGIDIPHR 334 RGRLL A++HLG+ P R Sbjct: 326 RGRLLTASAFRHLGLAEPAR 345 >gi|172046846|sp|Q130V3|RUVB_RHOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB Length = 348 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 226/320 (70%), Positives = 271/320 (84%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 +D + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V Sbjct: 14 DDLGDAALRPQHLSEFVGQQQARANLQIFIDAARKRKEALDHVLFVGPPGLGKTTLAQIV 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS VEE+LYPAMEDFQL Sbjct: 74 ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIP+RLNFY IE+L++IV+R Sbjct: 134 DLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYTIEELESIVKR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ G +T + A EIA R+RGTPRIAGRLLRRVRDFA A A I R+IAD AL L Sbjct: 194 GARVLGTGITADGANEIARRARGTPRIAGRLLRRVRDFASAADADAIDRKIADHALGALE 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ G++QRTP Sbjct: 254 VDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIPHR 334 RGRLL A++HLG+ P R Sbjct: 314 RGRLLTASAFRHLGLAEPAR 333 >gi|92118981|ref|YP_578710.1| Holliday junction DNA helicase RuvB [Nitrobacter hamburgensis X14] gi|123083536|sp|Q1QHP7|RUVB_NITHX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|91801875|gb|ABE64250.1| Holliday junction DNA helicase RuvB [Nitrobacter hamburgensis X14] Length = 347 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 225/334 (67%), Positives = 275/334 (82%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D +++ +D ++LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFV Sbjct: 1 MTDVPRMVTPERRSDDVGDTVLRPQRLAEFVGQAQARANLQIFIDAARKRKEALDHVLFV 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQLDL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIP+RL Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPVRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY +++L+ IV RGA++ + +T + A EIA R+RGTPRIAGRLLRRVRDFA A A + Sbjct: 181 NFYTVDELEKIVSRGARVLDVGMTADGANEIARRARGTPRIAGRLLRRVRDFASAADAAS 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R+IAD AL L +D G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+I Sbjct: 241 INRKIADHALGALEVDAAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDII 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EP++IQ G++QRTPRGRLL A++HLG+ P R Sbjct: 301 EPFLIQCGYLQRTPRGRLLTSHAFRHLGLTEPSR 334 >gi|299134171|ref|ZP_07027364.1| Holliday junction DNA helicase RuvB [Afipia sp. 1NLS2] gi|298590918|gb|EFI51120.1| Holliday junction DNA helicase RuvB [Afipia sp. 1NLS2] Length = 346 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 224/320 (70%), Positives = 270/320 (84%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 +D + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V Sbjct: 14 DDIGDTSLRPQNLSEFVGQAQARANLQVFIDAARKRNEALDHVLFVGPPGLGKTTLAQIV 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ VEE+LYPAMEDFQL Sbjct: 74 ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEVLYPAMEDFQL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI+L++FTL+ ATTR GLLTNPL+DRFGIP+RLNFY ++L+ IV R Sbjct: 134 DLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTNPLRDRFGIPLRLNFYTEDELEKIVTR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA A A I R+IAD AL L Sbjct: 194 GARVLGIGMTKDGANEIARRARGTPRIAGRLLRRVRDFASAADADAIDRKIADHALGALE 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +DK G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ G++QRTP Sbjct: 254 VDKAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIPHR 334 RGRLL A++HLG+ P R Sbjct: 314 RGRLLTDHAFRHLGLAAPSR 333 >gi|103485828|ref|YP_615389.1| Holliday junction DNA helicase RuvB [Sphingopyxis alaskensis RB2256] gi|122985270|sp|Q1GWB6|RUVB_SPHAL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|98975905|gb|ABF52056.1| Holliday junction DNA helicase RuvB [Sphingopyxis alaskensis RB2256] Length = 338 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/320 (69%), Positives = 259/320 (80%), Gaps = 1/320 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + EDAD +L RP+TL EF GQ A NL++FIEAAKAR +ALDHVLF GPPGLGKTTLAQ Sbjct: 10 TPEDADAAL-RPKTLAEFVGQAAARENLRIFIEAAKARGDALDHVLFFGPPGLGKTTLAQ 68 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VARELGV FRSTSGPVIAKAGDLAALLTNLED DVLFIDEIHRLS VEEILYPAMED Sbjct: 69 IVARELGVGFRSTSGPVIAKAGDLAALLTNLEDGDVLFIDEIHRLSPAVEEILYPAMEDR 128 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 LD+M+GEGPSARSV+I+L +FTL+ ATTR GLLT PL+DRFGIP+RLNFY +L+ ++ Sbjct: 129 ALDIMIGEGPSARSVRIDLPQFTLVGATTRQGLLTTPLRDRFGIPVRLNFYTHAELEQVI 188 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L GLA+ + A EIA RSRGTPRIAGRLLRRVRDFA VA + ADAAL R Sbjct: 189 GRAARLLGLAIAPDGALEIAKRSRGTPRIAGRLLRRVRDFAAVAGHAIVDARAADAALNR 248 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +G D +D RYLTMIA + GGPVG+ET++AGLSEPRD IED+IEPY++Q G I R Sbjct: 249 LEVDALGLDAMDRRYLTMIADIYRGGPVGVETLAAGLSEPRDTIEDVIEPYLLQIGLIAR 308 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 T RGR L AW+HLG++ P Sbjct: 309 TARGRTLNASAWKHLGLNPP 328 >gi|87198448|ref|YP_495705.1| Holliday junction DNA helicase B [Novosphingobium aromaticivorans DSM 12444] gi|97190186|sp|Q2GBA2|RUVB_NOVAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|87134129|gb|ABD24871.1| Holliday junction DNA helicase RuvB [Novosphingobium aromaticivorans DSM 12444] Length = 342 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 223/326 (68%), Positives = 260/326 (79%), Gaps = 1/326 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 LLS ED D +L RP+TL EF GQ A NL+VFIE+AK R EA+DHVLF GPPGLG Sbjct: 6 LLSSASQIEDQDAAL-RPKTLAEFVGQAGAKDNLQVFIESAKQRREAMDHVLFFGPPGLG 64 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ++ARELGVNFR+TSGPVIAKAGDLAALLTNLE DVLFIDEIHRL+ +VEE+LY Sbjct: 65 KTTLAQIIARELGVNFRATSGPVIAKAGDLAALLTNLEHGDVLFIDEIHRLNPVVEEVLY 124 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED LDL++GEGPSARSV+I+L FTLI ATTR GLL PL+DRFGIP+RL FY +E Sbjct: 125 PAMEDRALDLIIGEGPSARSVRIDLPPFTLIGATTRQGLLQTPLRDRFGIPVRLQFYSVE 184 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ +V RGA L G+ + A EIA RSRGTPR+AGRLLRRVRDFA+VA A+ IT+ IA Sbjct: 185 ELERVVARGASLMGIGIDKGGATEIARRSRGTPRVAGRLLRRVRDFAQVAGAEKITQSIA 244 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL RL +DK+G D D RYLTMIA + GGPVG+ET++AGLSEPRD IE++IEPY+IQ Sbjct: 245 DNALTRLEVDKIGLDLQDRRYLTMIADIYKGGPVGVETLAAGLSEPRDTIEEVIEPYLIQ 304 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332 G I RT RGR L WQHLG+ P Sbjct: 305 LGMIARTARGRCLNDRGWQHLGLAPP 330 >gi|114771192|ref|ZP_01448612.1| Holliday junction DNA helicase B [alpha proteobacterium HTCC2255] gi|114548117|gb|EAU51004.1| Holliday junction DNA helicase B [alpha proteobacterium HTCC2255] Length = 347 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/312 (66%), Positives = 259/312 (83%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L +FTGQ EA +NLKVFIE+AK R +A+DH LF GPPGLGKTTLAQ++++ELGVN Sbjct: 24 LRPQNLNDFTGQAEARANLKVFIESAKKRGQAMDHTLFYGPPGLGKTTLAQIISKELGVN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPV+AKAGDLAA+LTNLE+RDVLFIDEIHRL+ +VEE+LYPA+EDF+LDLM+GEG Sbjct: 84 FRMTSGPVLAKAGDLAAILTNLEERDVLFIDEIHRLNPVVEEVLYPALEDFELDLMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+I+L FTL+ ATTR+GLLT PL+DRFGIP RL FY +++L IV+RGA+L G+ Sbjct: 144 PAARSVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTRLEFYTVDELCLIVERGARLMGI 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIAGRLLRRV DFA V TI++E+AD +L RL +D +G D Sbjct: 204 EASADGAKEIARRARGTPRIAGRLLRRVVDFATVEGNGTISKELADNSLTRLGVDDLGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RYL M+A N+ GGPVGIETI+A LSE RDAIE+++EP+++QQG IQRTPRGR+L Sbjct: 264 GADRRYLRMVAENYAGGPVGIETIAAALSESRDAIEEVVEPFLLQQGLIQRTPRGRMLGQ 323 Query: 322 IAWQHLGIDIPH 333 AW HLG+ P Sbjct: 324 KAWSHLGMRAPK 335 >gi|83312315|ref|YP_422579.1| Holliday junction DNA helicase RuvB [Magnetospirillum magneticum AMB-1] gi|97190129|sp|Q2W2A5|RUVB_MAGMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|82947156|dbj|BAE52020.1| Holliday junction resolvasome, helicase subunit [Magnetospirillum magneticum AMB-1] Length = 347 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 214/331 (64%), Positives = 268/331 (80%), Gaps = 5/331 (1%) Query: 7 LLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 + SR VS E DA++SL RP++L++F GQ + C NLKVFI AA+AR EALDHVLF GP Sbjct: 1 MTSRVVSPEQNPNDAEMSL-RPQSLDDFVGQRQVCENLKVFISAARARGEALDHVLFHGP 59 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLAQ++ARELGV FR+TSGPVI +AGDLAALLTNLE RDVLFIDEIHRL+ +E Sbjct: 60 PGLGKTTLAQIMARELGVGFRATSGPVIQRAGDLAALLTNLEPRDVLFIDEIHRLNPAIE 119 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LYPAMEDFQLDL++GEGP+ARSV+I L FTL+ ATTR GLLT PL++RFGIP R+NF Sbjct: 120 EVLYPAMEDFQLDLIIGEGPAARSVRIELPPFTLVGATTRSGLLTTPLRERFGIPCRMNF 179 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE +L+ IV RGA++ G A+T + A E+A RSRGTPR+AGRLLRRVRDFA VA + Sbjct: 180 YEPAELEAIVSRGARVLGFALTPDGAAEVARRSRGTPRVAGRLLRRVRDFAVVAGRSPVD 239 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 +ADAAL RL +D++G D +D RYL IA N+GGGPVG+ET++A LSE RD +E+++EP Sbjct: 240 ALVADAALNRLEVDRIGLDAMDRRYLRCIAENYGGGPVGVETLAAALSESRDTLEEVVEP 299 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 Y++QQG IQRTPRGR+L ++H+G++ P Sbjct: 300 YLLQQGMIQRTPRGRMLSASGFKHIGLNPPK 330 >gi|259417288|ref|ZP_05741207.1| holliday junction DNA helicase RuvB [Silicibacter sp. TrichCH4B] gi|259346194|gb|EEW58008.1| holliday junction DNA helicase RuvB [Silicibacter sp. TrichCH4B] Length = 339 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 221/333 (66%), Positives = 263/333 (78%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+D + L + ED D +L RP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF Sbjct: 1 MIDADPTLRPDPLPEDNDRAL-RPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFH 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ+VARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAQIVARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF+LDL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL Sbjct: 120 VEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +++L IV R A+ G D A EIA R+RGTPRIAGRLLRRV DFA V T Sbjct: 180 QFYTVDELFEIVSRNARKLGAPADDAGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGT 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ITRE+AD AL RL +DK+G D D RYL ++A N+GGGPVGIET+SA LSE RDA+E++I Sbjct: 240 ITRELADGALTRLGVDKLGLDGADRRYLRLVAENYGGGPVGIETMSAALSESRDALEEVI 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY++QQG IQRTPRGR+L AWQHLGI P Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWQHLGIAPPK 332 >gi|56551054|ref|YP_161893.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp. mobilis ZM4] gi|241761368|ref|ZP_04759456.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753283|ref|YP_003226176.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81820941|sp|Q5NR72|RUVB_ZYMMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|56542628|gb|AAV88782.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp. mobilis ZM4] gi|241374275|gb|EER63772.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552646|gb|ACV75592.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 347 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 216/331 (65%), Positives = 263/331 (79%), Gaps = 1/331 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M R LL+ D D +L RPR+L+EF GQ A N++VFIEAAK R E+LDHVLF G Sbjct: 1 MTRNSLLNPEAENADPDQAL-RPRSLDEFIGQQAARENIRVFIEAAKKRQESLDHVLFFG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLAQ++ARE+GV FR+TSGPVI K+GDLAALLTNLED DVLFIDEIHRL +V Sbjct: 60 PPGLGKTTLAQIIAREMGVGFRATSGPVIVKSGDLAALLTNLEDGDVLFIDEIHRLQPVV 119 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMED LDLM+GEGPSARSV+I+L FTL+ ATTR GLL+ PL+DRFGIP+RL Sbjct: 120 EEVLYPAMEDRALDLMIGEGPSARSVRIDLPHFTLVGATTRQGLLSTPLRDRFGIPVRLQ 179 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY IE+L+ ++ R A+L G+ + E A EIA RSRGTPRIAGRLLRRVRDFA+VA +K + Sbjct: 180 FYSIEELRQVITRAARLLGMEIAPEGAEEIAKRSRGTPRIAGRLLRRVRDFADVAGSKIV 239 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 R IAD AL RL +DK+G D +D RYL MIA + GGPVG++T++AGLSEPRD +E++IE Sbjct: 240 DRFIADEALNRLEVDKLGLDLMDRRYLMMIADIYKGGPVGLDTLAAGLSEPRDTVEEVIE 299 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY+IQ G + RT RGR L +AW+HLG+ P Sbjct: 300 PYLIQLGLVARTARGRQLNGLAWRHLGLTDP 330 >gi|332188830|ref|ZP_08390539.1| holliday junction DNA helicase RuvB [Sphingomonas sp. S17] gi|332011140|gb|EGI53236.1| holliday junction DNA helicase RuvB [Sphingomonas sp. S17] Length = 341 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/332 (65%), Positives = 264/332 (79%), Gaps = 1/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D++ LLS + ED D +L RP++L+EF GQ A NL+VFI+AAK R +ALDHVLF Sbjct: 1 MTDQDRLLSASRRPEDVDAAL-RPKSLDEFVGQHAARDNLRVFIQAAKGRGDALDHVLFF 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++ARE+GV FR+TSGPVIAK+GDLAALLTNLED DVLFIDEIHRL Sbjct: 60 GPPGLGKTTLAQIIAREMGVGFRATSGPVIAKSGDLAALLTNLEDGDVLFIDEIHRLQPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMED LDLM+GEGPSARSV+I+L RFTL+ ATTR GLLT PL+DRFGIP+RL Sbjct: 120 VEEVLYPAMEDRVLDLMIGEGPSARSVRIDLPRFTLVGATTRQGLLTTPLRDRFGIPVRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +E+L +V R A+L L + ++ A E+A RSRGTPRIAGRLLRRVRDFA VA + Sbjct: 180 QFYTVEELTRVVTRAARLLDLPIAEDGAIEVARRSRGTPRIAGRLLRRVRDFASVAGHEI 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + AD AL RL +D +G D +D RYLTMIA + GGPVG+ET++AGLSEPRD IE++I Sbjct: 240 VHAAAADQALNRLEVDSLGLDAMDRRYLTMIADVYRGGPVGVETLAAGLSEPRDTIEEVI 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQ G + RT RGR+L P W+HLG++ P Sbjct: 300 EPYLIQLGLLARTARGRILNPGGWKHLGLNPP 331 >gi|89068046|ref|ZP_01155463.1| Holliday junction DNA helicase RuvB [Oceanicola granulosus HTCC2516] gi|89046285|gb|EAR52342.1| Holliday junction DNA helicase RuvB [Oceanicola granulosus HTCC2516] Length = 342 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/318 (68%), Positives = 261/318 (82%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP+TL+EF GQ EA +NLKVFIE+A+ R EA+DHVLF GPPGLGKTTLAQ++ Sbjct: 15 EDGDRAL-RPQTLDEFIGQAEARANLKVFIESARRRGEAMDHVLFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV+FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPA+EDF+L Sbjct: 74 ARELGVSFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFEL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY +E+L IV R Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYSVEELHEIVTR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA+L G TD A EIA R+RGTPRIAGRLLRRV DFA V T+T+ IAD AL RL Sbjct: 194 GARLLGAPATDGGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGTVTQAIADRALTRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D RYL +IA ++GGGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTP Sbjct: 254 VDTLGLDGADRRYLQLIAESYGGGPVGIETLSAALSESRDALEEVIEPYLLQQGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L AW+HLG+ P Sbjct: 314 RGRMLAEGAWRHLGLAAP 331 >gi|163742240|ref|ZP_02149628.1| Holliday junction DNA helicase B [Phaeobacter gallaeciensis 2.10] gi|161384570|gb|EDQ08951.1| Holliday junction DNA helicase B [Phaeobacter gallaeciensis 2.10] Length = 343 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 214/311 (68%), Positives = 253/311 (81%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ+VARELGVN Sbjct: 25 LRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFHGPPGLGKTTLAQIVARELGVN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPAMEDF+LDL++GEG Sbjct: 85 FRMTSGPVLAKAGDLAAILTNLESRDVLFIDEIHRLNPAVEEVLYPAMEDFELDLVIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY +++L IV R A+ G Sbjct: 145 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTVDELFEIVSRNARKLGA 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 DE A EIA R+RGTPRIAGRLLRRV DFA V TITRE+AD AL RL +D++G D Sbjct: 205 PADDEGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGTITRELADGALTRLGVDQLGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RYL M+A N+GGGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTPRGR+L Sbjct: 265 GADRRYLRMVAENYGGGPVGIETMSAALSESRDALEEVIEPYLLQQGLIQRTPRGRMLAH 324 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 325 KAWTHLGLTPP 335 >gi|296283073|ref|ZP_06861071.1| Holliday junction DNA helicase RuvB [Citromicrobium bathyomarinum JL354] Length = 342 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 215/318 (67%), Positives = 255/318 (80%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 +D D +L RP+TL EF GQ A NL VFI AAK R EA+DH LF GPPGLGKTTLAQ+V Sbjct: 14 DDPDAAL-RPKTLTEFIGQEAARENLGVFIAAAKRRGEAMDHTLFFGPPGLGKTTLAQIV 72 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELG FRSTSGPVIAKAGDLAALLTNLE DVLFIDEIHRL+ +VEE+LYPAMED L Sbjct: 73 ARELGAGFRSTSGPVIAKAGDLAALLTNLEPHDVLFIDEIHRLNPVVEEVLYPAMEDRAL 132 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DLM+GEGPSARSV+I+L FTLI ATTR GLLT PL+DRFGIP+RLNFY E+L+ +V R Sbjct: 133 DLMIGEGPSARSVRIDLPPFTLIGATTRQGLLTTPLRDRFGIPVRLNFYTHEELERVVTR 192 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA GL + + A EIA RSRGTPR+AGRLLRRVRDFA V +A +IT ++AD+AL +L Sbjct: 193 GANKLGLKIEPDGAREIARRSRGTPRVAGRLLRRVRDFASVDNAPSITAQVADSALTKLE 252 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D +D RYLTMIA +GGGPVGIET++AGL+EPRD +ED++EP++IQ G + RT Sbjct: 253 VDSLGLDAMDRRYLTMIAETYGGGPVGIETLAAGLAEPRDTLEDVVEPFLIQLGLVARTA 312 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR L WQHLG+ +P Sbjct: 313 RGRCLNAGGWQHLGLAVP 330 >gi|115526755|ref|YP_783666.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris BisA53] gi|115520702|gb|ABJ08686.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris BisA53] Length = 371 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 226/320 (70%), Positives = 268/320 (83%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 +D + LRP+TL EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V Sbjct: 39 DDVGDTALRPQTLAEFVGQQQARANLQIFIDAARKRQEALDHVLFVGPPGLGKTTLAQIV 98 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS VEE+LYPAMEDFQL Sbjct: 99 ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 158 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIPIRLNFY +E+L+ IV R Sbjct: 159 DLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPIRLNFYTVEELEGIVSR 218 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ G +T + A EIA R+RGTPRIAGRLLRRVRDFA A A I R IAD AL L Sbjct: 219 GARVLGTGITPDGANEIARRARGTPRIAGRLLRRVRDFASAADAAAIDRRIADHALSALE 278 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEP++IQ G++QRTP Sbjct: 279 VDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPFLIQCGYLQRTP 338 Query: 315 RGRLLMPIAWQHLGIDIPHR 334 RGRLL A++HLG+ P R Sbjct: 339 RGRLLTSHAFKHLGLAEPSR 358 >gi|172046771|sp|Q07H98|RUVB_RHOP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB Length = 347 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 226/320 (70%), Positives = 268/320 (83%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 +D + LRP+TL EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V Sbjct: 15 DDVGDTALRPQTLAEFVGQQQARANLQIFIDAARKRQEALDHVLFVGPPGLGKTTLAQIV 74 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS VEE+LYPAMEDFQL Sbjct: 75 ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 134 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIPIRLNFY +E+L+ IV R Sbjct: 135 DLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPIRLNFYTVEELEGIVSR 194 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ G +T + A EIA R+RGTPRIAGRLLRRVRDFA A A I R IAD AL L Sbjct: 195 GARVLGTGITPDGANEIARRARGTPRIAGRLLRRVRDFASAADAAAIDRRIADHALSALE 254 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEP++IQ G++QRTP Sbjct: 255 VDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPFLIQCGYLQRTP 314 Query: 315 RGRLLMPIAWQHLGIDIPHR 334 RGRLL A++HLG+ P R Sbjct: 315 RGRLLTSHAFKHLGLAEPSR 334 >gi|84516658|ref|ZP_01004017.1| Holliday junction DNA helicase RuvB [Loktanella vestfoldensis SKA53] gi|84509694|gb|EAQ06152.1| Holliday junction DNA helicase RuvB [Loktanella vestfoldensis SKA53] Length = 339 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 217/318 (68%), Positives = 258/318 (81%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 EDAD +L RP+TL+EF GQ EA +NLKVFIE+A+ R EA+DH LF GPPGLGKTTLAQ++ Sbjct: 15 EDADRAL-RPQTLDEFIGQREARANLKVFIESARRRGEAMDHTLFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPA+EDF L Sbjct: 74 ARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFAL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY ++L IV R Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLEFYTQDELHLIVTR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A+L G DE A EIA R+RGTPRIAGRLLRRV DFA V T+T+EIAD AL RL Sbjct: 194 AARLLGAPAADEGAREIARRARGTPRIAGRLLRRVVDFAIVEGDGTVTQEIADMALNRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D MG DQ D RYL +IA ++ GGPVGIET+SA LSE RD++ED+IEPY++Q+G IQRTP Sbjct: 254 VDDMGLDQADRRYLRLIAESYAGGPVGIETLSAALSESRDSLEDVIEPYLLQKGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L AW HLG+D P Sbjct: 314 RGRMLAQAAWTHLGLDAP 331 >gi|85374912|ref|YP_458974.1| Holliday junction DNA helicase RuvB [Erythrobacter litoralis HTCC2594] gi|123099493|sp|Q2N814|RUVB_ERYLH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|84787995|gb|ABC64177.1| Holliday junction resolvasome helicase subunit [Erythrobacter litoralis HTCC2594] Length = 343 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 218/327 (66%), Positives = 259/327 (79%), Gaps = 1/327 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D L + + ED D++L RP++L EF GQ A NL VFIEAA++R EA+DH LF Sbjct: 1 MTDPIPLHTPDRQPEDPDVAL-RPKSLAEFVGQAAAKDNLAVFIEAARSRGEAMDHTLFF 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++ARELGV FR+TSGPVIAKAGDLAALLTNLE DVLFIDEIHRL+ + Sbjct: 60 GPPGLGKTTLAQIIARELGVGFRATSGPVIAKAGDLAALLTNLEPHDVLFIDEIHRLNPV 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMED LDL++GEGP+ARSV+I+L FTLI ATTR GLLT PL+DRFGIP+RL Sbjct: 120 VEEVLYPAMEDRALDLIIGEGPAARSVRIDLPPFTLIGATTRQGLLTTPLRDRFGIPVRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY E+L+ +V RGA L GLA+ A EIA RSRGTPR+AGRLLRRVRDFAEV A T Sbjct: 180 NFYTEEELEKVVTRGAGLMGLAIDAAGAREIARRSRGTPRVAGRLLRRVRDFAEVQKAGT 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T IADAAL RL +D +G D +D RYLTMIA + GGPVG+ET++AGL+EPRD IED++ Sbjct: 240 VTSPIADAALTRLEVDGLGLDAMDRRYLTMIADIYKGGPVGVETLAAGLAEPRDTIEDVV 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EPY+IQ G + RT RGR L W+HL Sbjct: 300 EPYLIQLGLVARTARGRCLNDRGWEHL 326 >gi|83592425|ref|YP_426177.1| Holliday junction DNA helicase RuvB [Rhodospirillum rubrum ATCC 11170] gi|97190249|sp|Q2RVF5|RUVB_RHORT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|83575339|gb|ABC21890.1| Holliday junction DNA helicase RuvB [Rhodospirillum rubrum ATCC 11170] Length = 350 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 209/311 (67%), Positives = 258/311 (82%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L +F GQ + NL VF++AA+AR EA+DHVLF GPPGLGKTTLAQ+VARELGV Sbjct: 25 LRPQSLADFVGQRQTRENLGVFVQAARARGEAMDHVLFHGPPGLGKTTLAQIVARELGVG 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGP+I KAGDLAA+LTNLE RDVLFIDEIHRL+ +EE+LYPAMEDFQLDL++GEG Sbjct: 85 FRGTSGPMIVKAGDLAAILTNLEPRDVLFIDEIHRLNPAIEEVLYPAMEDFQLDLIIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+I+L FTL+ ATTR GLLT PL+DRFGIP+RL+FYE ++L IV RG++L G+ Sbjct: 145 PAARSVRIDLPPFTLVGATTRSGLLTTPLRDRFGIPLRLDFYETDELVQIVTRGSRLLGM 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+TDE A E+A RSRGTPR+AGRLLRRVRDFA VA + IADAAL RL +D G D Sbjct: 205 ALTDEGAREVARRSRGTPRVAGRLLRRVRDFAAVAGRSPVDAFIADAALNRLEVDGRGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D RYL+ +A ++GGGPVG++T++A L+E RD +ED+IEPY+IQQGFI+RTPRGR+L Sbjct: 265 AMDRRYLSRMADHYGGGPVGVDTLAAALAEERDTVEDVIEPYLIQQGFIKRTPRGRMLTA 324 Query: 322 IAWQHLGIDIP 332 IAW HLG+ P Sbjct: 325 IAWTHLGLTPP 335 >gi|254475746|ref|ZP_05089132.1| Holliday junction DNA helicase RuvB [Ruegeria sp. R11] gi|214029989|gb|EEB70824.1| Holliday junction DNA helicase RuvB [Ruegeria sp. R11] Length = 343 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 215/311 (69%), Positives = 254/311 (81%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ+VARELGVN Sbjct: 25 LRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFHGPPGLGKTTLAQIVARELGVN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPAMEDF+LDL++GEG Sbjct: 85 FRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPAMEDFELDLVIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY I++L IV R A+ G Sbjct: 145 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTIDELFEIVSRNARKLGA 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 D+ A EIA R+RGTPRIAGRLLRRV DFA V TITR++AD AL RL +D++G D Sbjct: 205 PADDDGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGTITRDLADGALTRLGVDQLGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RYL MIA N+GGGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTPRGR+L Sbjct: 265 GADRRYLRMIAENYGGGPVGIETMSAALSESRDALEEVIEPYLLQQGLIQRTPRGRMLAH 324 Query: 322 IAWQHLGIDIP 332 AW+HLGI P Sbjct: 325 KAWEHLGIRPP 335 >gi|163738343|ref|ZP_02145758.1| Holliday junction DNA helicase RuvB [Phaeobacter gallaeciensis BS107] gi|161388264|gb|EDQ12618.1| Holliday junction DNA helicase RuvB [Phaeobacter gallaeciensis BS107] Length = 349 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 213/311 (68%), Positives = 253/311 (81%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ+VARELGVN Sbjct: 31 LRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFHGPPGLGKTTLAQIVARELGVN 90 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPAMEDF+LDL++GEG Sbjct: 91 FRMTSGPVLAKAGDLAAILTNLESRDVLFIDEIHRLNPAVEEVLYPAMEDFELDLVIGEG 150 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY +++L IV R A+ G Sbjct: 151 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTVDELFEIVSRNARKLGA 210 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 D+ A EIA R+RGTPRIAGRLLRRV DFA V TITRE+AD AL RL +D++G D Sbjct: 211 PADDDGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGTITRELADGALTRLGVDQLGLD 270 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RYL M+A N+GGGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTPRGR+L Sbjct: 271 GADRRYLRMVAENYGGGPVGIETMSAALSESRDALEEVIEPYLLQQGLIQRTPRGRMLAH 330 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 331 KAWTHLGLTPP 341 >gi|99082211|ref|YP_614365.1| Holliday junction DNA helicase RuvB [Ruegeria sp. TM1040] gi|123252171|sp|Q1GE13|RUVB_SILST RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|99038491|gb|ABF65103.1| Holliday junction DNA helicase RuvB [Ruegeria sp. TM1040] Length = 339 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 220/333 (66%), Positives = 261/333 (78%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+D + L ED D +L RP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF Sbjct: 1 MIDADPTLRPEPLPEDNDRAL-RPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFH 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ+VARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAQIVARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF+LDL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL Sbjct: 120 VEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY I++L IV R A+ G D A EIA R+RGTPRIAGRLLRRV DFA V T Sbjct: 180 QFYTIDELFEIVSRNARKLGAPADDAGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGT 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ITRE+AD AL RL +D++G D D RYL ++A N+GGGPVGIET+SA LSE RDA+E++I Sbjct: 240 ITRELADGALTRLGVDQLGLDGADRRYLRLVAENYGGGPVGIETMSAALSESRDALEEVI 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY++QQG IQRTPRGR+L AW HLGI P Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWTHLGIAPPK 332 >gi|23015564|ref|ZP_00055336.1| COG2255: Holliday junction resolvasome, helicase subunit [Magnetospirillum magnetotacticum MS-1] Length = 347 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/327 (63%), Positives = 264/327 (80%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 ++S + DA+ SL RP +L++F GQ + C NLKVFI AA+AR +ALDHVLF GPPGLG Sbjct: 5 VVSPEQNSADAETSL-RPLSLDDFVGQRQVCENLKVFISAARARGDALDHVLFHGPPGLG 63 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VARELGV FR+TSGPVI +AGDLAALLTNLE DVLFIDEIHRL+ +EE+LY Sbjct: 64 KTTLAQIVARELGVGFRATSGPVIQRAGDLAALLTNLEANDVLFIDEIHRLNPAIEEVLY 123 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLDL++GEGP+ARSV+I+L RFTL+ ATTR GLLT PL++RFGIP R+NFYE Sbjct: 124 PAMEDFQLDLIIGEGPAARSVRIDLPRFTLVGATTRSGLLTTPLRERFGIPCRMNFYEPA 183 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L++IV RGA++ +T + A E+A RSRGTPR+AGRLLRRVRDFA VA + +A Sbjct: 184 ELESIVARGARVLNFDLTPDGAAEVARRSRGTPRVAGRLLRRVRDFAAVAGRSPVDAPVA 243 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 DAAL RL +D++G D +D RYL IA N+GGGPVG+ET++A LSE RD +E+++EPY++Q Sbjct: 244 DAALNRLEVDRIGLDAMDRRYLRCIAENYGGGPVGVETLAAALSESRDTLEEVVEPYLLQ 303 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 QG IQRTPRGR++ ++H+GI+ P Sbjct: 304 QGMIQRTPRGRMVSASGFKHIGINPPK 330 >gi|159043654|ref|YP_001532448.1| Holliday junction DNA helicase RuvB [Dinoroseobacter shibae DFL 12] gi|157911414|gb|ABV92847.1| holliday junction DNA helicase RuvB [Dinoroseobacter shibae DFL 12] Length = 357 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 210/320 (65%), Positives = 259/320 (80%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 + D LRP++L+ F GQ EA +NL+VF+E+A+ R EA+DHVLF GPPGLGKTTLAQ+ Sbjct: 15 ERDGADRALRPQSLDAFIGQAEARANLRVFVESARRRGEAMDHVLFHGPPGLGKTTLAQI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARELGVNFR TSGPV+AKAGDLAALLTNLE RDVLFIDEIHRL+ +VEE+LYPA+EDF+ Sbjct: 75 MARELGVNFRMTSGPVLAKAGDLAALLTNLEARDVLFIDEIHRLNPVVEEVLYPALEDFE 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LDL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP+RL FY E+L+ IV Sbjct: 135 LDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPVRLQFYSAEELEQIVA 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 RGA++ + EIA R+RGTPRIAGRLLRRV DFA V TITR +AD AL RL Sbjct: 195 RGARMLDVPAEPSGIAEIARRARGTPRIAGRLLRRVVDFALVEGDGTITRAVADGALTRL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D+ G D D RYL+++A N+GGGPVGIETISA LSE RDA+E++IEPY++QQGF+QRT Sbjct: 255 GVDRAGLDGGDRRYLSLLADNYGGGPVGIETISAALSEARDAVEEVIEPYLLQQGFLQRT 314 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 PRGR+L AW HLG++ P Sbjct: 315 PRGRMLARKAWAHLGLEPPR 334 >gi|254450147|ref|ZP_05063584.1| Holliday junction DNA helicase RuvB [Octadecabacter antarcticus 238] gi|198264553|gb|EDY88823.1| Holliday junction DNA helicase RuvB [Octadecabacter antarcticus 238] Length = 344 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 214/311 (68%), Positives = 250/311 (80%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ EA SNL VFIE+AK R EA+DH LF GPPGLGKTTLAQ++ARELGV Sbjct: 25 LRPQMLSEFVGQAEARSNLAVFIESAKMRGEAMDHTLFHGPPGLGKTTLAQIMARELGVG 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPA+EDF+LDL++GEG Sbjct: 85 FRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFELDLVIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V+I L FTLI ATTR+GLLT PL+DRFGIP RL FY IE+L IV RGA+L G Sbjct: 145 PAARTVRIELQPFTLIGATTRMGLLTTPLRDRFGIPTRLEFYTIEELHKIVTRGARLMGA 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 T + A EIA R+RGTPRIAGRLLRRV DFA V T+T IAD+AL RL +D +G D Sbjct: 205 PATPDGAQEIAKRARGTPRIAGRLLRRVVDFAIVEGDGTVTHAIADSALTRLGVDHLGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RYL +IA N+ GGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTPRGR+L Sbjct: 265 SADRRYLRLIAENYQGGPVGIETMSAALSESRDALEEVIEPYLLQQGLIQRTPRGRMLAQ 324 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 325 KAWTHLGMAAP 335 >gi|119383445|ref|YP_914501.1| Holliday junction DNA helicase B [Paracoccus denitrificans PD1222] gi|166231509|sp|A1AZW1|RUVB_PARDP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|119373212|gb|ABL68805.1| Holliday junction DNA helicase RuvB [Paracoccus denitrificans PD1222] Length = 341 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/319 (64%), Positives = 259/319 (81%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 + D + LRP+ LE+F GQ EA +NL+VFIE+A+ R +A+DH LF GPPGLGKTTLAQ+ Sbjct: 14 ESDGEDRALRPQRLEDFVGQAEARANLRVFIESARMRGKAMDHTLFHGPPGLGKTTLAQI 73 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARELGVNF+ TSGPV+A+AGDLAA+LTNLE RDVLFIDEIHR++ VEEILYPAMEDF+ Sbjct: 74 MARELGVNFKMTSGPVLARAGDLAAILTNLEARDVLFIDEIHRMNPAVEEILYPAMEDFE 133 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LDL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY IE+L IV Sbjct: 134 LDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTIEELDLIVT 193 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 RGA+L G+ E EIA R+RGTPRIAGRLLRRV DFA V +TR+IAD+AL RL Sbjct: 194 RGARLMGIPSEPEGTREIARRARGTPRIAGRLLRRVVDFALVEGDGRLTRKIADSALTRL 253 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +G D D RYLT++A ++GGGPVG+ET+SA LSE RD+IE++IEPY++QQG + RT Sbjct: 254 GVDHLGLDTADRRYLTLMAEHYGGGPVGVETLSAALSESRDSIEEVIEPYLMQQGLVSRT 313 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+L + W+HLG+D P Sbjct: 314 PRGRMLARLGWRHLGLDAP 332 >gi|126737219|ref|ZP_01752954.1| Holliday junction DNA helicase B [Roseobacter sp. SK209-2-6] gi|126721804|gb|EBA18507.1| Holliday junction DNA helicase B [Roseobacter sp. SK209-2-6] Length = 343 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 213/313 (68%), Positives = 250/313 (79%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ+VARELGVN Sbjct: 25 LRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFHGPPGLGKTTLAQIVARELGVN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPAMEDF+LDL++GEG Sbjct: 85 FRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPAMEDFELDLVIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY I++L IV R A+ G Sbjct: 145 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTIDELHEIVTRNARKLGA 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 D A EIA R+RGTPRIAGRLLRRV DFA V ITRE+AD AL RL +D +G D Sbjct: 205 PADDAGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGKITRELADGALTRLGVDNLGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RYL +IA N+ GGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTPRGR+L Sbjct: 265 GADRRYLNLIAENYSGGPVGIETLSAALSESRDALEEVIEPYLLQQGLIQRTPRGRMLAQ 324 Query: 322 IAWQHLGIDIPHR 334 AW HLG+ P R Sbjct: 325 KAWTHLGMPPPQR 337 >gi|260431114|ref|ZP_05785085.1| holliday junction DNA helicase RuvB [Silicibacter lacuscaerulensis ITI-1157] gi|260414942|gb|EEX08201.1| holliday junction DNA helicase RuvB [Silicibacter lacuscaerulensis ITI-1157] Length = 339 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 216/332 (65%), Positives = 261/332 (78%), Gaps = 1/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D + L ED D +L RP+ L+EF GQ EA +NL++FI++A+ R EA+DH LF Sbjct: 1 MADADPTLRPQPLPEDNDRAL-RPQGLDEFIGQAEARANLRIFIQSARQRNEAMDHTLFH 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE+RDVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLEERDVLFIDEIHRLNPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF+LDL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL Sbjct: 120 VEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY ++L IV R A+ G D+ A EIA RSRGTPRIAGRLLRRV DFA V Sbjct: 180 QFYTEDELHEIVTRNARKLGAPAEDDGAREIARRSRGTPRIAGRLLRRVVDFAIVEGDGR 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ITRE+AD AL RL +DK+G D D RYL +IA N+GGGPVGIET+SA LSE RD++E++I Sbjct: 240 ITRELADGALTRLGVDKLGLDGADRRYLKLIAENYGGGPVGIETLSAALSESRDSLEEVI 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++QQG IQRTPRGR+L AW HLG+ P Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWTHLGMAAP 331 >gi|326386114|ref|ZP_08207738.1| Holliday junction DNA helicase B [Novosphingobium nitrogenifigens DSM 19370] gi|326209339|gb|EGD60132.1| Holliday junction DNA helicase B [Novosphingobium nitrogenifigens DSM 19370] Length = 346 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 215/328 (65%), Positives = 261/328 (79%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 LL+ ED D +L RP+TL EF GQ A NL+VFIE+A+ R E++DHVLF GPPGLG Sbjct: 6 LLTPQRQPEDVDAAL-RPKTLGEFIGQEGARENLRVFIESARQRRESMDHVLFFGPPGLG 64 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ++ARELGVNFR+TSGPVIAK+GDLAALLTNLE+ DVLFIDEIHRL+ VEE+LY Sbjct: 65 KTTLAQIIARELGVNFRATSGPVIAKSGDLAALLTNLEEGDVLFIDEIHRLNPQVEEVLY 124 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED LDL++GEGPSARSV+I+L FTLI ATTR GLL PL+DRFGIP+RL FY + Sbjct: 125 PAMEDRALDLIIGEGPSARSVRIDLPGFTLIGATTRQGLLQTPLRDRFGIPVRLQFYTVA 184 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ +V RGA L G+ + E A EIA R+RGTPR+AGRLLRRVRDFA+VA + TIT+ IA Sbjct: 185 ELERVVTRGANLLGIGIEPEGAHEIARRARGTPRVAGRLLRRVRDFAQVAGSPTITQAIA 244 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D +L RL +DK+G D D RYL MIA + GGPVG+ET++AGLSEPRD IE++IEPY+IQ Sbjct: 245 DKSLTRLEVDKLGLDLQDRRYLMMIADIYKGGPVGVETLAAGLSEPRDTIEEVIEPYLIQ 304 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 G + RT RGR L AW HLG+ +P + Sbjct: 305 LGLVARTARGRCLNDRAWHHLGLPVPQQ 332 >gi|240142617|ref|YP_002967130.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Methylobacterium extorquens AM1] gi|240012564|gb|ACS43789.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Methylobacterium extorquens AM1] Length = 344 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 213/313 (68%), Positives = 253/313 (80%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L +F GQ A L+++I+AA+ R +ALDHVLFVGPPGLGKTTLAQ+VARELGVN Sbjct: 18 IRPTSLADFNGQRAAREQLQLWIDAARQRKDALDHVLFVGPPGLGKTTLAQIVARELGVN 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+STSGPVIAKAGDLAA LT L D DVLFIDEIHRL+ VEEILYPAMED+QLDLMVGEG Sbjct: 78 FKSTSGPVIAKAGDLAATLTQLGDNDVLFIDEIHRLNPAVEEILYPAMEDYQLDLMVGEG 137 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SARSVK++L +FTLI ATTR GLL+ PL+DRFGIP+RL FY IE+L+ +V R A + G+ Sbjct: 138 ASARSVKLDLPKFTLIGATTRSGLLSTPLRDRFGIPVRLEFYSIEELELVVTRAAGVFGI 197 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T E A E+A R+RGTPRIAGRLLRRVRD A V+ A TI REIAD AL L +D G D Sbjct: 198 GITPEGANEVARRARGTPRIAGRLLRRVRDCAVVSGAATIDREIADRALGMLDVDDRGLD 257 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD RYL ++A F GGPVGIET++A LSEPRD IED +EPY+IQQGF+QRTPRGR++ Sbjct: 258 RLDRRYLGIVAEAFAGGPVGIETVAAALSEPRDTIEDTLEPYLIQQGFLQRTPRGRVITA 317 Query: 322 IAWQHLGIDIPHR 334 AW HLG+ P R Sbjct: 318 AAWSHLGLAPPAR 330 >gi|255264190|ref|ZP_05343532.1| holliday junction DNA helicase RuvB [Thalassiobium sp. R2A62] gi|255106525|gb|EET49199.1| holliday junction DNA helicase RuvB [Thalassiobium sp. R2A62] Length = 339 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/311 (66%), Positives = 255/311 (81%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+EF GQ EA +NLK+FI++A+ R EA+DH LF GPPGLGKTTLAQ++ARELGVN Sbjct: 21 LRPQVLDEFIGQAEARANLKIFIQSARKREEAMDHTLFHGPPGLGKTTLAQIMARELGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPV+AKAGDLAA+LTNLE +DVLFIDEIHRL+ VEE+LYPA+EDF+LDL++GEG Sbjct: 81 FRMTSGPVLAKAGDLAAILTNLEAQDVLFIDEIHRLNPAVEEVLYPALEDFELDLVIGEG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL+FY ++L IV RGA+L G Sbjct: 141 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLHFYTTDELHEIVTRGARLMGC 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 DE A EIA R+RGTPRIAGRLLRRV DFA V +T+ IAD AL RL +D +G D Sbjct: 201 PADDEGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGRVTQAIADRALTRLGVDHLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RYL ++A N+GGGPVGIET+SA LSE RD++E++IEP+++QQG IQRTPRGR+L Sbjct: 261 GADRRYLRLVAENYGGGPVGIETLSAALSESRDSLEEVIEPFLLQQGLIQRTPRGRMLAQ 320 Query: 322 IAWQHLGIDIP 332 AW HLG+D+P Sbjct: 321 KAWTHLGLDVP 331 >gi|163796369|ref|ZP_02190330.1| Holliday junction resolvasome, helicase subunit [alpha proteobacterium BAL199] gi|159178511|gb|EDP63053.1| Holliday junction resolvasome, helicase subunit [alpha proteobacterium BAL199] Length = 357 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/323 (64%), Positives = 262/323 (81%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L++ + + ED + LRP+TL++F GQ NL++F++AA+ R EALDHVL GPPGLG Sbjct: 13 LIAGDRAPEDLGETTLRPQTLDDFVGQKRVRQNLRIFVDAARGRGEALDHVLLFGPPGLG 72 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VARELGVNFR+TSGPVIAKAGDLAALLTNL RDVLFIDEIHRL+ VEE+LY Sbjct: 73 KTTLAQIVARELGVNFRATSGPVIAKAGDLAALLTNLGPRDVLFIDEIHRLNPAVEEVLY 132 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED+QLDL++GEGPSARS++I+L FTL+AATTR GL+T PL++RFGIP+RL FY+ E Sbjct: 133 PAMEDYQLDLIIGEGPSARSIRIDLPPFTLVAATTRSGLITTPLRERFGIPLRLEFYDTE 192 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L +IV+RGA+L +TD+ A EIA R+RGTPR+AGRLLRRVRDFA VA + + E+A Sbjct: 193 ELTSIVRRGARLLDFDLTDDGAGEIARRARGTPRVAGRLLRRVRDFASVAGSGRVDAELA 252 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 DA+L RL ID+ G D +D RYL IA N+GGGPVG ET+ A L E RD IE++IEPY++Q Sbjct: 253 DASLTRLDIDQRGLDAMDRRYLGCIAENYGGGPVGAETLGAALGEQRDVIEEVIEPYLMQ 312 Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329 QG +QRTPRGR+L W++LG+ Sbjct: 313 QGLLQRTPRGRILSAAGWRYLGL 335 >gi|126733599|ref|ZP_01749346.1| Holliday junction DNA helicase RuvB [Roseobacter sp. CCS2] gi|126716465|gb|EBA13329.1| Holliday junction DNA helicase RuvB [Roseobacter sp. CCS2] Length = 339 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 212/318 (66%), Positives = 258/318 (81%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 EDAD +L RP+TL+ F GQ A +NL VFIE+A+ R EA+DH LF GPPGLGKTTLAQ++ Sbjct: 15 EDADRAL-RPQTLDAFIGQQAARANLSVFIESARRRGEAMDHTLFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPA+EDF+L Sbjct: 74 ARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFEL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY ++L IV R Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLEFYTEDELHEIVTR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA+L G + E A EIA R+RGTPRIAGRLLRRV DFA V T+T++IAD AL RL Sbjct: 194 GARLMGAPASPEGAREIARRARGTPRIAGRLLRRVVDFAIVEGDGTVTQQIADRALTRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D RYL +IA ++GGGPVG+ET+SA LSE RD++ED+IEPY++Q+G IQRTP Sbjct: 254 VDHLGLDNADRRYLRLIAESYGGGPVGVETLSAALSESRDSLEDVIEPYLLQKGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L AW HLG+D P Sbjct: 314 RGRMLAQAAWAHLGLDAP 331 >gi|94496109|ref|ZP_01302687.1| Holliday junction DNA helicase RuvB [Sphingomonas sp. SKA58] gi|94424288|gb|EAT09311.1| Holliday junction DNA helicase RuvB [Sphingomonas sp. SKA58] Length = 339 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 213/332 (64%), Positives = 265/332 (79%), Gaps = 1/332 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M + LL+ ED D +L RP++L+EF GQ A NL++FI+AAK+R +ALDHVLF G Sbjct: 1 MTDDRLLTPARRPEDVDAAL-RPKSLDEFVGQQAARENLRIFIQAAKSRGDALDHVLFFG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLAQ+VA+E+GV FR+TSGPVIAK+GDLAALLTNL++ DVLF+DEIHRL+ V Sbjct: 60 PPGLGKTTLAQIVAKEMGVGFRATSGPVIAKSGDLAALLTNLDEGDVLFVDEIHRLNPAV 119 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMED LDLM+GEGPSARSV+I+L RFTL+ ATTR GLLT PL+DRFGIP+RL Sbjct: 120 EEVLYPAMEDRALDLMIGEGPSARSVRIDLPRFTLVGATTRQGLLTTPLRDRFGIPVRLQ 179 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY +E+L+ +V+R A L L++T + A EIA RSRGTPRIAGRLLRRVRDFA VA A + Sbjct: 180 FYTVEELERVVRRAAHLLDLSITSDGAVEIARRSRGTPRIAGRLLRRVRDFANVAGAPAV 239 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 R++AD+AL RL +D++G D +D RYL MIA + GGPVG+ET++AGLSE RD IE++IE Sbjct: 240 DRQVADSALQRLEVDQLGLDLMDRRYLMMIADIYRGGPVGVETLAAGLSEARDTIEEVIE 299 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 PY+IQ G I RT RGR L W+HLG+ P Sbjct: 300 PYLIQLGLIARTARGRCLNGPGWKHLGLHPPQ 331 >gi|148555053|ref|YP_001262635.1| Holliday junction DNA helicase RuvB [Sphingomonas wittichii RW1] gi|172048254|sp|A5V881|RUVB_SPHWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|148500243|gb|ABQ68497.1| Holliday junction DNA helicase RuvB [Sphingomonas wittichii RW1] Length = 342 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 215/332 (64%), Positives = 259/332 (78%), Gaps = 1/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D + LLS ED D +L RPR+L+EF GQ A NL+VFIEAA+ R +ALDHVLF Sbjct: 1 MTDTDRLLSAGRRAEDVDAAL-RPRSLDEFVGQQAARDNLRVFIEAARQRGDALDHVLFF 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++A+E+G FR+TSGPVIAK+GDLAALLTNLED DVLFIDEIHRL Sbjct: 60 GPPGLGKTTLAQIIAKEMGAGFRATSGPVIAKSGDLAALLTNLEDGDVLFIDEIHRLQPQ 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMED LDLM+GEGPSARSV+I+L RFTL+ ATTR GL+T PL+DRFGIPIRL Sbjct: 120 VEEVLYPAMEDRALDLMIGEGPSARSVRIDLPRFTLVGATTRQGLITTPLRDRFGIPIRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +E+L+ +V R A+L L + + A EIA R+RGTPRIAGRLLRRVRDFA V A Sbjct: 180 QFYTVEELERVVSRAARLLDLPIASDGAMEIARRARGTPRIAGRLLRRVRDFAHVLGADI 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + ++AD +L RL +D +G D +D RYL MIA + GGPVG+ET++AGLSEPRD IED+I Sbjct: 240 VDAKVADQSLNRLEVDNLGLDAMDRRYLHMIADIYRGGPVGVETLAAGLSEPRDTIEDVI 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQ G I RT RGR L W+HLG++ P Sbjct: 300 EPYLIQLGLIARTARGRCLNGRGWKHLGLNPP 331 >gi|254441549|ref|ZP_05055042.1| Holliday junction DNA helicase RuvB [Octadecabacter antarcticus 307] gi|198251627|gb|EDY75942.1| Holliday junction DNA helicase RuvB [Octadecabacter antarcticus 307] Length = 345 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 211/311 (67%), Positives = 250/311 (80%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ EA +NL VFIE+AK R EA+DH LF GPPGLGKTTLAQ++ARELGV Sbjct: 26 LRPQMLSEFVGQAEARANLAVFIESAKRRGEAMDHTLFHGPPGLGKTTLAQIMARELGVG 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPV+AKAGDLAA+LTNLE +DVLFIDEIHRL+ VEE+LYPA+EDF+LDL++G G Sbjct: 86 FRMTSGPVLAKAGDLAAILTNLEAQDVLFIDEIHRLNPAVEEVLYPALEDFELDLVIGVG 145 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V+I L FTLI ATTR+GLLT PL+DRFGIP RL FY +E+L IV RGA+L G Sbjct: 146 PAARTVRIELQPFTLIGATTRMGLLTTPLRDRFGIPTRLEFYTVEELHKIVTRGARLMGA 205 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 T + A EIA R+RGTPRIAGRLLRRV DFA V T+T IAD+AL RL +D +G D Sbjct: 206 PATPDGAQEIAKRARGTPRIAGRLLRRVVDFAIVEGDGTVTHAIADSALTRLGVDHLGLD 265 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RYLT+IA N+ GGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTPRGR+L Sbjct: 266 SADRRYLTLIAENYQGGPVGIETMSAALSESRDALEEVIEPYLLQQGLIQRTPRGRMLAQ 325 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 326 KAWTHLGMAAP 336 >gi|84687717|ref|ZP_01015590.1| Holliday junction DNA helicase RuvB [Maritimibacter alkaliphilus HTCC2654] gi|84664300|gb|EAQ10791.1| Holliday junction DNA helicase RuvB [Rhodobacterales bacterium HTCC2654] Length = 342 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/318 (66%), Positives = 259/318 (81%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP+TL +F GQ EA +NL VFIE+A+ R EA+DH LF GPPGLGKTTLAQ++ Sbjct: 15 EDVDRAL-RPQTLADFIGQAEARANLSVFIESARRRGEAMDHALFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ +VEE+LYPA+EDF+L Sbjct: 74 ARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPVVEEVLYPALEDFEL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY +E+L +IV + Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTVEELHSIVTK 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A G ++ A EIA R+RGTPRIAGRLLRRV DFA V ITR IAD AL RL Sbjct: 194 NAIKLGAPADEDGALEIAKRARGTPRIAGRLLRRVVDFAVVEGDGRITRAIADNALTRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D RYLT++A ++GGGPVGIET++A LSE RDA+E++IEPY++QQG IQRTP Sbjct: 254 VDHLGLDGADRRYLTLMAEHYGGGPVGIETLAAALSESRDALEEVIEPYLLQQGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L +AW+HLG++ P Sbjct: 314 RGRMLGHLAWRHLGLEAP 331 >gi|75676908|ref|YP_319329.1| Holliday junction DNA helicase B [Nitrobacter winogradskyi Nb-255] gi|97190181|sp|Q3SP14|RUVB_NITWN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|74421778|gb|ABA05977.1| Holliday junction DNA helicase RuvB [Nitrobacter winogradskyi Nb-255] Length = 348 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 222/320 (69%), Positives = 267/320 (83%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 +D + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V Sbjct: 15 DDVGDTALRPQKLSEFIGQRQARANLQIFIDAARKREEALDHVLFVGPPGLGKTTLAQIV 74 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS VEE+LYPAMEDFQL Sbjct: 75 ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 134 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI L++FTL+ ATTR GLLTNPL+DRFGIP+RLNFY ++L+ IV R Sbjct: 135 DLIIGEGPAARSVKIELAKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYTEDELEKIVSR 194 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ + +T + A EIA R+RGTPRIAGRLLRRVRDFAE A A I R +AD AL L Sbjct: 195 GARVLNVGMTPDGANEIARRARGTPRIAGRLLRRVRDFAEAADAAAIDRAVADHALGALE 254 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D +D RYLT IA ++GGGPVG+ET++A LSEPRDAIED+IEPY+IQ G++QRTP Sbjct: 255 VDAAGLDAMDRRYLTTIALSYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTP 314 Query: 315 RGRLLMPIAWQHLGIDIPHR 334 RGRLL A++HLG+ P R Sbjct: 315 RGRLLTSHAFRHLGLTEPSR 334 >gi|254510650|ref|ZP_05122717.1| Holliday junction DNA helicase RuvB [Rhodobacteraceae bacterium KLH11] gi|221534361|gb|EEE37349.1| Holliday junction DNA helicase RuvB [Rhodobacteraceae bacterium KLH11] Length = 327 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 208/311 (66%), Positives = 250/311 (80%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ EA +NL++FI++A+ R EA+DH LF GPPGLGKTTLAQ++ARELGVN Sbjct: 9 LRPQGLGEFIGQAEARANLRIFIQSARQRGEAMDHTLFHGPPGLGKTTLAQIMARELGVN 68 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPAMEDF+LDL++GEG Sbjct: 69 FRMTSGPVLAKAGDLAAILTNLESRDVLFIDEIHRLNPAVEEVLYPAMEDFELDLVIGEG 128 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY +++L IV R A+ G Sbjct: 129 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTVDELHEIVTRNARKLGA 188 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 D A EIA RSRGTPRIAGRLLRRV DFA V ITR++AD AL RL +D +G D Sbjct: 189 PADDAGAREIARRSRGTPRIAGRLLRRVVDFAIVEGDGRITRDLADGALTRLGVDNLGLD 248 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RYL +IA N+GGGPVGIET+SA LSE RD++E++IEPY++QQG IQR+PRGR+L Sbjct: 249 GADRRYLKLIAENYGGGPVGIETLSAALSESRDSLEEVIEPYLLQQGLIQRSPRGRMLAQ 308 Query: 322 IAWQHLGIDIP 332 AW HLGI P Sbjct: 309 KAWTHLGIAAP 319 >gi|126725529|ref|ZP_01741371.1| Holliday junction DNA helicase B [Rhodobacterales bacterium HTCC2150] gi|126704733|gb|EBA03824.1| Holliday junction DNA helicase B [Rhodobacterales bacterium HTCC2150] Length = 346 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/318 (66%), Positives = 256/318 (80%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED+D +L RP+ L EF GQ EA +NL VFI++A+ R +A+DH LF GPPGLGKTTLAQ++ Sbjct: 19 EDSDRAL-RPQQLGEFIGQEEARANLSVFIQSARQRGQAMDHTLFHGPPGLGKTTLAQIM 77 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPA+EDF+L Sbjct: 78 ARELGVNFRMTSGPVLAKAGDLAAILTNLEKRDVLFIDEIHRLNPAVEEVLYPALEDFEL 137 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY + +L IV R Sbjct: 138 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTVPELHEIVTR 197 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA+L G+ + A EIA R+RGTPRIAGRLLRRV DFA V T+TR++AD AL RL Sbjct: 198 GARLLGVPCDADGALEIAKRARGTPRIAGRLLRRVVDFALVEGDGTLTRKLADHALTRLG 257 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D RYL M+A N+GGGPVGIET++A LSE RDA+E++IEPY++QQG IQRTP Sbjct: 258 VDHLGLDGADRRYLMMMAENYGGGPVGIETLAAALSESRDALEEVIEPYLLQQGLIQRTP 317 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR L AW HLG+ P Sbjct: 318 RGRALGAKAWTHLGLSSP 335 >gi|86139154|ref|ZP_01057724.1| Holliday junction DNA helicase RuvB [Roseobacter sp. MED193] gi|85823998|gb|EAQ44203.1| Holliday junction DNA helicase RuvB [Roseobacter sp. MED193] Length = 343 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 215/336 (63%), Positives = 260/336 (77%), Gaps = 3/336 (0%) Query: 1 MMDREGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M+D + L + EDA LRP+ + EF GQ EA +NL++FIE+A+ R EA+DH Sbjct: 1 MIDADPTLRPDPIPEDASGEGDRALRPQGISEFIGQAEARANLRIFIESARRRGEAMDHT 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 LF GPPGLGKTTLAQ+VARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL Sbjct: 61 LFHGPPGLGKTTLAQIVARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 + +VEEILYPA+EDF+LDL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP Sbjct: 121 NPVVEEILYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIP 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL FY +++L IV R A+ G E A EIA R+RGTPRIAGRLLRRV DFA V Sbjct: 181 TRLQFYTVDELFEIVSRNARKLGTPADAEGAREIARRARGTPRIAGRLLRRVVDFAVVEG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 ITR++AD AL RL +D++G D D RYL +IA N+ GGPVGIET+SA LSE RD++E Sbjct: 241 DGRITRDLADGALTRLGVDRLGLDGADRRYLRLIAENYSGGPVGIETLSAALSESRDSLE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 D+IEPY++QQG IQRTPRGR+L AW HLGI P Sbjct: 301 DVIEPYLLQQGLIQRTPRGRMLAQKAWTHLGIAPPQ 336 >gi|149185529|ref|ZP_01863845.1| Holliday junction resolvasome helicase subunit [Erythrobacter sp. SD-21] gi|148830749|gb|EDL49184.1| Holliday junction resolvasome helicase subunit [Erythrobacter sp. SD-21] Length = 347 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 211/327 (64%), Positives = 255/327 (77%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L S + ED D +L RP++L EF GQ A NL+VFIEAAK R EA+DHVLF GPPGLG Sbjct: 8 LHSPDRQPEDPDAAL-RPKSLAEFVGQKAARENLRVFIEAAKNRGEAMDHVLFFGPPGLG 66 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+V++ELGV FR+TSGPVIAKAGDLAALLTNLE DVLFIDEIHRL+ +VEE+LY Sbjct: 67 KTTLAQIVSKELGVGFRATSGPVIAKAGDLAALLTNLEPNDVLFIDEIHRLNPVVEEVLY 126 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED LD+++GEGPSARSV+I+L FTL+ ATTR GLLT PL+DRFGIP+RLNFY + Sbjct: 127 PAMEDRALDIIIGEGPSARSVRIDLPPFTLVGATTRQGLLTTPLRDRFGIPVRLNFYTED 186 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L +V RGA L G+ + + A EIA RSRGTPR+AGRL+RRVRDFA V +T +A Sbjct: 187 ELLKVVTRGAGLLGMGIDEGGAREIARRSRGTPRVAGRLMRRVRDFASVLGEPVVTTRVA 246 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL RL +D +G D +D RYLTMIA + GGPVG+ET++AGLSEPRD +E++IEPY+IQ Sbjct: 247 DEALTRLEVDSLGLDAMDRRYLTMIATTYKGGPVGVETLAAGLSEPRDTVEEVIEPYLIQ 306 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 G I RT RGR+L W HLG+ P Sbjct: 307 LGLIARTARGRMLNDGGWNHLGMRPPQ 333 >gi|294678734|ref|YP_003579349.1| holliday junction DNA helicase RuvB [Rhodobacter capsulatus SB 1003] gi|294477554|gb|ADE86942.1| holliday junction DNA helicase RuvB [Rhodobacter capsulatus SB 1003] Length = 345 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 207/319 (64%), Positives = 260/319 (81%), Gaps = 1/319 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 EDAD +L RP+ LEEF GQ EA +NL+VFIE+AK R +A+DH LF GPPGLGKTTLAQ++ Sbjct: 15 EDADRAL-RPQVLEEFIGQAEARANLRVFIESAKMRGQAMDHTLFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGVNF+ TSGPV+A+AGDLAA+LTNLE+RDVLFIDEIHR++ VEE+LYPAMEDF+L Sbjct: 74 ARELGVNFKMTSGPVLARAGDLAAILTNLENRDVLFIDEIHRMNPAVEEVLYPAMEDFEL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY ++L IV R Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTEDELDLIVSR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA+L G+ + EIA R+RGTPRIAGRLLRRV DFA V +TR++AD AL RL Sbjct: 194 GARLLGIPADPDGTREIAKRARGTPRIAGRLLRRVVDFALVEGDGRLTRKLADNALTRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D RY+ ++A ++GGGPVG+ET+SA LSE RDA+E++IEPY++QQG IQRTP Sbjct: 254 VDHLGLDGADRRYMMLMAEHYGGGPVGVETLSAALSESRDALEEVIEPYLLQQGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIPH 333 RGR+L AW+HLG++ P Sbjct: 314 RGRMLGHRAWRHLGLEAPQ 332 >gi|114765390|ref|ZP_01444505.1| Holliday junction DNA helicase B [Pelagibaca bermudensis HTCC2601] gi|114542233|gb|EAU45263.1| Holliday junction DNA helicase B [Roseovarius sp. HTCC2601] Length = 341 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 212/333 (63%), Positives = 260/333 (78%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D + L ED D +L RP+ L +F GQ EA +NL+VFI++A+ R+EA+DH LF Sbjct: 1 MTDPDPTLRPEPMPEDRDRAL-RPQMLGDFVGQAEARANLRVFIQSARQRSEAMDHTLFH 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE DVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLERNDVLFIDEIHRLNAA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMED++LDL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL Sbjct: 120 VEEVLYPAMEDYELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +E+L +IV R A+ G+ + A EIA R+RGTPRIAGRLLRRV DFA V Sbjct: 180 QFYTVEELNSIVTRNAEKLGVRAEPDGAREIARRARGTPRIAGRLLRRVVDFAVVEGNGV 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +TRE+AD AL RL +D +G D D RYL +IA ++GGGPVGIETI+A LSE RDAIE++I Sbjct: 240 VTRELADGALTRLGVDGLGLDGADRRYLGLIAEHYGGGPVGIETIAAALSESRDAIEEVI 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY++QQG IQRTPRGR+L AW HLG+ P Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQRAWTHLGLAAPQ 332 >gi|300023942|ref|YP_003756553.1| Holliday junction DNA helicase RuvB [Hyphomicrobium denitrificans ATCC 51888] gi|299525763|gb|ADJ24232.1| Holliday junction DNA helicase RuvB [Hyphomicrobium denitrificans ATCC 51888] Length = 348 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 216/334 (64%), Positives = 269/334 (80%), Gaps = 2/334 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+S + DA + +RP++L+EF GQ +A +NL++FI AA+ R +ALDHVLF Sbjct: 1 MTDR--LVSSARKEVDAYEATIRPQSLDEFIGQEQARANLRIFITAARGRGDALDHVLFA 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++A+ELGV FR+TSGPVI+KAGDLAALLTNLE+RDVLFIDEIHRL+ Sbjct: 59 GPPGLGKTTLAQIMAKELGVGFRATSGPVISKAGDLAALLTNLEERDVLFIDEIHRLNPA 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDFQLDLM+GEGP+ARSV+I+L +FTL+ ATTR GLLTNPL+DRFGIP+RL Sbjct: 119 VEEILYPAMEDFQLDLMIGEGPAARSVRIDLPKFTLVGATTRAGLLTNPLRDRFGIPVRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 NFY + +L+ +V RGA++ G + + A EIA RSRGTPRIAGRLLRRVRDFA V A Sbjct: 179 NFYSVPELELVVSRGARVLGANMASDGAREIAKRSRGTPRIAGRLLRRVRDFAAVEGAAV 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + +AD AL L +D G D LD RYL I +N+ GGPVGIET++A LSEPRDA+E+++ Sbjct: 239 VNAAVADRALKMLEVDGEGLDALDHRYLGCILKNYEGGPVGIETLAAALSEPRDALEEIV 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY++QQGFI RTPRGR+L A++HLG+ P R Sbjct: 299 EPYLLQQGFISRTPRGRVLTLKAYRHLGVSGPAR 332 >gi|310816583|ref|YP_003964547.1| Holliday junction DNA helicase RuvB [Ketogulonicigenium vulgare Y25] gi|308755318|gb|ADO43247.1| Holliday junction DNA helicase RuvB [Ketogulonicigenium vulgare Y25] Length = 340 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 212/332 (63%), Positives = 260/332 (78%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M++ + L + ED LRP+ L+EF GQ EA +NL++FIE+A+ R EA+DH LF Sbjct: 1 MIESDPTLRADPLPEDNPDRALRPQGLDEFVGQAEARANLRIFIESARRRGEAMDHTLFH 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++ARELGV FR TSGPV+AK GDLAA+LTNLE RDVLFIDEIHRLS + Sbjct: 61 GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKPGDLAAILTNLEPRDVLFIDEIHRLSPV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LDL++GEGP+AR+V+I+L FTL+ ATTR+GLLT PL+DRFGIP RL Sbjct: 121 VEEVLYPAMEDFALDLVIGEGPAARTVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY IE+L IV+RGA+L G+ D+ A EIA R+RGTPRIAGRLLRRV DFA V Sbjct: 181 EFYTIEELNLIVRRGARLLGVPTDDDGAREIARRARGTPRIAGRLLRRVVDFALVEGDGR 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I+ +AD AL RL +D +G D D RYL MI F GGPVGIETI+A LSE RDAIE++I Sbjct: 241 ISHALADMALTRLGVDDLGLDGADRRYLNMIGDTFAGGPVGIETIAAALSESRDAIEEVI 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++QQG IQR+PRGR+L AW+H+G++ P Sbjct: 301 EPYLLQQGLIQRSPRGRVLTLAAWRHIGLEPP 332 >gi|146277280|ref|YP_001167439.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides ATCC 17025] gi|166231545|sp|A4WRX0|RUVB_RHOS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|145555521|gb|ABP70134.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides ATCC 17025] Length = 341 Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust. Identities = 211/318 (66%), Positives = 256/318 (80%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP++LEEF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ++ Sbjct: 15 EDMDRAL-RPQSLEEFVGQAEARANLRVFIESARMRGEAMDHTLFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR TSGPV+AK GDLAA+LTNLE RDVLFIDEIHRLS +VEE+LYPA+EDF L Sbjct: 74 ARELGVGFRMTSGPVLAKPGDLAAILTNLEPRDVLFIDEIHRLSPVVEEVLYPALEDFAL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY +L IV R Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTEAELTLIVAR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ G+ E EIA R+RGTPRIAGRLLRRV DFA V +T+ IAD AL RL Sbjct: 194 GARMMGVDSDPEGTQEIARRARGTPRIAGRLLRRVVDFALVEGDGRLTQAIADRALTRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D RYL++IA N+GGGPVGIETI+A LSE RDA+E++IEPY++QQG IQRTP Sbjct: 254 VDHLGLDLGDRRYLSLIAENYGGGPVGIETIAAALSEARDAVEEVIEPYLLQQGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L AW+HLG++ P Sbjct: 314 RGRMLAHKAWRHLGLEAP 331 >gi|89053457|ref|YP_508908.1| Holliday junction DNA helicase RuvB [Jannaschia sp. CCS1] gi|123401320|sp|Q28TS9|RUVB_JANSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|88863006|gb|ABD53883.1| Holliday junction DNA helicase RuvB [Jannaschia sp. CCS1] Length = 344 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 211/337 (62%), Positives = 264/337 (78%), Gaps = 3/337 (0%) Query: 1 MMDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M D + L + ED D LRP++L++FTGQ EA +NL+VFIE+A+ R EA+DHV Sbjct: 1 MTDSDPTLRPDRLPEDVQATDDRALRPQSLDDFTGQEEARANLRVFIESARRRGEAMDHV 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 LF GPPGLGKTTLAQ++A+ELGV FR TSGPV+AKAGDLAA+LTNLE +DVLFIDEIHRL Sbjct: 61 LFHGPPGLGKTTLAQIMAKELGVGFRMTSGPVLAKAGDLAAILTNLEAKDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 + +VEEILYPA+EDF+LDL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP Sbjct: 121 NPVVEEILYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIP 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RLNFY I +L IV RGA+L G+ + EIA R+RGTPRIAGRLLRRV DFA V Sbjct: 181 TRLNFYTIAELDQIVARGARLAGIEADPKGTAEIAKRARGTPRIAGRLLRRVIDFAVVEG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 +T+ IAD+AL RL +D +G D D RYL++IA N+ GGPVGIET++A L+EPRDA+E Sbjct: 241 DGRLTQGIADSALTRLGVDDLGLDGADRRYLSLIAENYHGGPVGIETVAAALAEPRDALE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++IEP+++QQG I RTPRGR+L W HLG+ P R Sbjct: 301 EVIEPFLLQQGLIARTPRGRMLAHKGWTHLGMAPPKR 337 >gi|254459640|ref|ZP_05073056.1| Holliday junction DNA helicase RuvB [Rhodobacterales bacterium HTCC2083] gi|206676229|gb|EDZ40716.1| Holliday junction DNA helicase RuvB [Rhodobacteraceae bacterium HTCC2083] Length = 340 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 211/320 (65%), Positives = 258/320 (80%), Gaps = 1/320 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP+ L+EF GQ EA +NLKVFIE+AK R EA+DH LF GPPGLGKTTLAQ++ Sbjct: 14 EDNDRAL-RPQALDEFIGQAEARANLKVFIESAKRRGEAMDHTLFHGPPGLGKTTLAQIM 72 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 +RELGV+FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ +VEEILYPA+EDF+L Sbjct: 73 SRELGVSFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPVVEEILYPALEDFEL 132 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY ++L TIV+R Sbjct: 133 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLEFYTEDELFTIVER 192 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A+ G + A EIA R+RGTPRIAGRLLRRV DFA V +TR++AD AL RL Sbjct: 193 NARKLGTPADEGGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGRVTRDLADNALTRLG 252 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +DK+G D D RYL +IA N+ GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP Sbjct: 253 VDKLGLDGADRRYLRLIAENYQGGPVGIETMSAALSESRDALEEVIEPFLLQQGLIQRTP 312 Query: 315 RGRLLMPIAWQHLGIDIPHR 334 RGR+L AW HLG+ P + Sbjct: 313 RGRMLAQKAWTHLGMAAPRK 332 >gi|260428346|ref|ZP_05782325.1| holliday junction DNA helicase RuvB [Citreicella sp. SE45] gi|260422838|gb|EEX16089.1| holliday junction DNA helicase RuvB [Citreicella sp. SE45] Length = 341 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 205/311 (65%), Positives = 252/311 (81%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L++F GQ EA +NL+VFI++A++R EA+DH LF GPPGLGKTTLAQ++ARELGVN Sbjct: 21 LRPQMLDDFVGQAEARANLRVFIQSARSRGEAMDHTLFHGPPGLGKTTLAQIMARELGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPAMED++LDL++GEG Sbjct: 81 FRMTSGPVLAKAGDLAAILTNLETRDVLFIDEIHRLNPAVEEVLYPAMEDYELDLVIGEG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY +++L +IV R A+ G+ Sbjct: 141 PAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTVDELNSIVTRNAEKLGV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A EIA R+RGTPRIAGRLLRRV DFA V +T+++AD AL RL +D MG D Sbjct: 201 RAEPAGAREIARRARGTPRIAGRLLRRVVDFAVVEGNGVVTQQLADGALTRLGVDGMGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RYL +IA ++ GGPVGIETISA LSE RDAIE++IEPY++QQG IQRTPRGR+L Sbjct: 261 SADRRYLRLIAEHYAGGPVGIETISAALSESRDAIEEVIEPYLLQQGLIQRTPRGRMLAQ 320 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 321 RAWDHLGMPAP 331 >gi|56697947|ref|YP_168318.1| Holliday junction DNA helicase RuvB [Ruegeria pomeroyi DSS-3] gi|81819940|sp|Q5LNT8|RUVB_SILPO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|56679684|gb|AAV96350.1| Holliday junction DNA helicase RuvB [Ruegeria pomeroyi DSS-3] Length = 341 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 211/332 (63%), Positives = 261/332 (78%), Gaps = 1/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D + L + ED D +L RP+ L+EF GQ EA +NL++F+++A+ R EA+DH LF Sbjct: 1 MTDADPTLRPDPLPEDNDRAL-RPQALDEFIGQAEARANLRIFVQSARQRGEAMDHTLFH 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF+LDL++G+GP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL Sbjct: 120 VEEVLYPAMEDFELDLVIGDGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +++L IV R A+ G + A EIA R+RGTPRIAGRLLRRV DFA V Sbjct: 180 LFYTVDELFEIVSRNARKLGAPAEEAGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGR 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ITRE+AD AL RL +D++G D D RYL +IA N+ GGPVGIET+SA LSE RD++E++I Sbjct: 240 ITRELADHALTRLGVDQLGLDGADRRYLRLIAENYSGGPVGIETLSAALSESRDSLEEVI 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++QQG IQRTPRGR+L AW HLG+D P Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWTHLGLDAP 331 >gi|77464123|ref|YP_353627.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides 2.4.1] gi|126462966|ref|YP_001044080.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides ATCC 17029] gi|221639990|ref|YP_002526252.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides KD131] gi|97190254|sp|Q3J0F8|RUVB_RHOS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231544|sp|A3PLU2|RUVB_RHOS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767437|sp|B9KKV4|RUVB_RHOSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|77388541|gb|ABA79726.1| Holliday junction DNA helicase subunit RuvB [Rhodobacter sphaeroides 2.4.1] gi|126104630|gb|ABN77308.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides ATCC 17029] gi|221160771|gb|ACM01751.1| Holliday junction ATP-dependent DNA helicase ruvB [Rhodobacter sphaeroides KD131] Length = 341 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/318 (66%), Positives = 257/318 (80%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP++LEEF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ++ Sbjct: 15 EDMDRAL-RPQSLEEFVGQAEARANLRVFIESARMRGEAMDHTLFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR TSGPV+AK GDLAA+LTNLE RDVLFIDEIHRLS +VEE+LYPA+EDF L Sbjct: 74 ARELGVGFRMTSGPVLAKPGDLAAILTNLEPRDVLFIDEIHRLSPVVEEVLYPALEDFAL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I+L FTL+ ATTR+GLLT PL+DRFGIP RL FY ++L IV R Sbjct: 134 DLVIGEGPAARTVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTEDELDLIVAR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ G+ E EIA R+RGTPRIAGRLLRRV DFA V +T+ IAD AL RL Sbjct: 194 GARMMGVDSDPEGTREIARRARGTPRIAGRLLRRVVDFALVEGDGRLTQAIADRALTRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D RY+ +IA N+GGGPVGIETI+A LSE RDA+E++IEPY++QQG IQRTP Sbjct: 254 VDHLGLDLGDRRYIGLIAENYGGGPVGIETIAAALSESRDAVEEVIEPYLLQQGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L AW+H+GI+ P Sbjct: 314 RGRMLAHKAWRHMGIEPP 331 >gi|288957820|ref|YP_003448161.1| holliday junction DNA helicase [Azospirillum sp. B510] gi|288910128|dbj|BAI71617.1| holliday junction DNA helicase [Azospirillum sp. B510] Length = 362 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/333 (60%), Positives = 268/333 (80%), Gaps = 2/333 (0%) Query: 3 DREG--LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 +R+G L+ D+ + +RP +L EF GQ +A NL +FI+AA++R EALDHVL Sbjct: 7 NRQGDRLVQPGQGHGDSAEASIRPLSLAEFIGQRQARENLSIFIQAARSRNEALDHVLLF 66 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ+VARELGV FR+TSGPVIA+AGDLAALLTNL+ +DVLFIDEIHRL+ Sbjct: 67 GPPGLGKTTLAQIVARELGVGFRATSGPVIARAGDLAALLTNLQPQDVLFIDEIHRLNPA 126 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQLDL++GEGPSARS++I+L FTL+ ATTR GL+T PL++RFGIP+RL Sbjct: 127 VEEVLYPAMEDFQLDLIIGEGPSARSIRIDLPPFTLVGATTRSGLITRPLRERFGIPVRL 186 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FYE ++L+ IV+R A + G+ +T E A EIA R+RGTPR++GRLLRRVRDFA VA + Sbjct: 187 QFYEPDELELIVRRAAGVLGMGITPEGAREIANRARGTPRVSGRLLRRVRDFAAVAGVEE 246 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + + +ADAAL RL +D++G D +D RYL ++A N+GGGPVG+ET+ A L E RD +E+++ Sbjct: 247 VDKRVADAALTRLEVDRLGLDSMDRRYLGLVANNYGGGPVGVETLGAALGEQRDVLEEVV 306 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY+IQQGF+QRTPRGR+L +++LG++ P+ Sbjct: 307 EPYLIQQGFLQRTPRGRMLTDQGFRYLGLNPPN 339 >gi|332558999|ref|ZP_08413321.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides WS8N] gi|332276711|gb|EGJ22026.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides WS8N] Length = 325 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/311 (66%), Positives = 253/311 (81%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++LEEF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ++ARELGV Sbjct: 5 LRPQSLEEFVGQAEARANLRVFIESARMRGEAMDHTLFHGPPGLGKTTLAQIMARELGVG 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPV+AK GDLAA+LTNLE RDVLFIDEIHRLS +VEE+LYPA+EDF LDL++GEG Sbjct: 65 FRMTSGPVLAKPGDLAAILTNLEPRDVLFIDEIHRLSPVVEEVLYPALEDFALDLVIGEG 124 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V+I+L FTL+ ATTR+GLLT PL+DRFGIP RL FY ++L IV RGA++ G+ Sbjct: 125 PAARTVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTEDELDLIVARGARMMGV 184 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 E EIA R+RGTPRIAGRLLRRV DFA V +T+ IAD AL RL +D +G D Sbjct: 185 DSDPEGTREIARRARGTPRIAGRLLRRVVDFALVEGDGRLTQAIADRALTRLGVDHLGLD 244 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RY+ +IA N+GGGPVGIETI+A LSE RDA+E++IEPY++QQG IQRTPRGR+L Sbjct: 245 LGDRRYIGLIAENYGGGPVGIETIAAALSESRDAVEEVIEPYLLQQGLIQRTPRGRMLAH 304 Query: 322 IAWQHLGIDIP 332 AW+H+GI+ P Sbjct: 305 KAWRHMGIEPP 315 >gi|126732346|ref|ZP_01748146.1| Holliday junction DNA helicase B [Sagittula stellata E-37] gi|126707215|gb|EBA06281.1| Holliday junction DNA helicase B [Sagittula stellata E-37] Length = 341 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/319 (64%), Positives = 257/319 (80%), Gaps = 1/319 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP+ L +F GQ EA +NL+VFIE+A++R EA+DH LF GPPGLGKTTLAQ++ Sbjct: 14 EDRDRAL-RPQMLADFVGQAEARANLRVFIESARSRGEAMDHTLFHGPPGLGKTTLAQIM 72 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHR+S VEE+LYPAMED++L Sbjct: 73 ARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRMSAAVEEVLYPAMEDYEL 132 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RLNFY +++L+TIV Sbjct: 133 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLNFYTVDELETIVAG 192 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A+ G+ V A EIA R+RGTPRIAGRLLRRV DFA V +T+ +AD++L RL Sbjct: 193 NARKLGVRVEGSGAREIARRARGTPRIAGRLLRRVVDFAVVEGGGVVTQALADSSLTRLG 252 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D D RYL +IA+++GGGPVGIET+SA LSE RDA+E+++EPY++QQG IQRTP Sbjct: 253 VDARGLDGADRRYLELIAQSYGGGPVGIETLSAALSESRDALEEVVEPYLLQQGLIQRTP 312 Query: 315 RGRLLMPIAWQHLGIDIPH 333 RGR+L AW H+G+ P Sbjct: 313 RGRMLTQSAWTHIGLAPPR 331 >gi|85709395|ref|ZP_01040460.1| Holliday junction resolvasome helicase subunit [Erythrobacter sp. NAP1] gi|85688105|gb|EAQ28109.1| Holliday junction resolvasome helicase subunit [Erythrobacter sp. NAP1] Length = 347 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 208/313 (66%), Positives = 249/313 (79%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 + LRP+ L EF GQ A NL+VFI++A+AR EA+DH LF GPPGLGKTTLAQ+VA ELG Sbjct: 20 TALRPKRLAEFIGQEAAKDNLRVFIDSARARGEAMDHTLFHGPPGLGKTTLAQIVAGELG 79 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 V FR+TSGPVIAKAGDLAALLTNLE DVLFIDEIHRL+ +VEE+LYPAMED LD+++G Sbjct: 80 VGFRATSGPVIAKAGDLAALLTNLEPHDVLFIDEIHRLNPVVEEVLYPAMEDRALDIIIG 139 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 EGPSARSV+I+L FTL+ ATTR GLLT PL+DRFGIP+RL FY ++L +V RGA+L Sbjct: 140 EGPSARSVRIDLPPFTLVGATTRQGLLTTPLRDRFGIPVRLQFYTHDELDQVVTRGARLL 199 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 GL + A EIA RSRGTPR+AGRLLRRVRDFA+VA T+TR +AD AL RL ID++G Sbjct: 200 GLDIEASGAREIARRSRGTPRVAGRLLRRVRDFAQVAGQVTVTRAMADDALTRLEIDRLG 259 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D +D RYLTMIA + GGPVG+ ISAGLSE RD +E++IEPY+IQ G I RT RGR+L Sbjct: 260 LDAMDRRYLTMIAETYKGGPVGVAAISAGLSEQRDTVEEVIEPYLIQLGLIARTERGRML 319 Query: 320 MPIAWQHLGIDIP 332 W+HLG+ P Sbjct: 320 NDAGWEHLGVAKP 332 >gi|58040114|ref|YP_192078.1| Holliday junction DNA helicase RuvB [Gluconobacter oxydans 621H] gi|81819055|sp|Q5FQC4|RUVB_GLUOX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|58002528|gb|AAW61422.1| Holliday junction DNA helicase RuvB [Gluconobacter oxydans 621H] Length = 349 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 208/318 (65%), Positives = 252/318 (79%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED LRP TL +FTGQ + NL +FIEAA+AR EALDHVL GPPGLGKTTLAQ+V Sbjct: 15 EDMGEGSLRPETLADFTGQKASRENLAIFIEAARARNEALDHVLLHGPPGLGKTTLAQIV 74 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL +EE+LYPAMEDFQL Sbjct: 75 ARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEVLYPAMEDFQL 134 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSV+I+L+ FTL+AATTR GLL PL+DRFGIP+RL FY E+L+ IV R Sbjct: 135 DLIIGEGPAARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPEELRAIVSR 194 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA G+ +TD+ A EIA RSRGTPRIAGRLLRRVRDFA V+ + R +ADAAL RL Sbjct: 195 GALKLGMRLTDDGAEEIARRSRGTPRIAGRLLRRVRDFALVSKHAVVDRALADAALGRLE 254 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D+ G D +D RYL IA + GGPVG+ET++AGL+E RD +ED+IEPY+IQ+G + RT Sbjct: 255 VDERGLDAMDRRYLKRIAEHHHGGPVGVETLAAGLAEARDTLEDVIEPYLIQEGLVLRTA 314 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L W+HLG+ P Sbjct: 315 RGRMLGEAGWRHLGLTPP 332 >gi|83954485|ref|ZP_00963196.1| Holliday junction DNA helicase RuvB [Sulfitobacter sp. NAS-14.1] gi|83840769|gb|EAP79940.1| Holliday junction DNA helicase RuvB [Sulfitobacter sp. NAS-14.1] Length = 339 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 212/333 (63%), Positives = 257/333 (77%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+D + L + D D +L RP+ L+EF GQ EA +NLKVFI++AK R EA+DH LF Sbjct: 1 MIDSDPTLRPDPQPGDIDRAL-RPQMLDEFVGQAEARANLKVFIQSAKQRGEAMDHTLFH 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPA+EDF+LDL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL Sbjct: 120 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY ++L IV R A+ G + A EIA R+RGTPRIAGRLLRRV DFA V Sbjct: 180 QFYTEDELFIIVDRNARKLGAPADEGGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGR 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +TR +AD AL RL +DK+G D D RYL +IA N+ GGPVGIET+SA LSE RDA+E++I Sbjct: 240 VTRALADMALTRLGVDKLGLDGADRRYLRLIAENYQGGPVGIETMSAALSESRDALEEVI 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY++QQG IQRTPRGR+L AW HLG+ P Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWTHLGMAPPK 332 >gi|83943912|ref|ZP_00956369.1| Holliday junction DNA helicase RuvB [Sulfitobacter sp. EE-36] gi|83845159|gb|EAP83039.1| Holliday junction DNA helicase RuvB [Sulfitobacter sp. EE-36] Length = 344 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 212/333 (63%), Positives = 257/333 (77%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+D + L + D D +L RP+ L+EF GQ EA +NLKVFI++AK R EA+DH LF Sbjct: 6 MIDSDPTLRPDPQPGDIDRAL-RPQMLDEFVGQAEARANLKVFIQSAKQRGEAMDHTLFH 64 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ Sbjct: 65 GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 124 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPA+EDF+LDL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL Sbjct: 125 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 184 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY ++L IV R A+ G + A EIA R+RGTPRIAGRLLRRV DFA V Sbjct: 185 QFYTEDELFIIVDRNARKLGAPADEGGAREIAKRARGTPRIAGRLLRRVVDFALVEGDGR 244 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +TR +AD AL RL +DK+G D D RYL +IA N+ GGPVGIET+SA LSE RDA+E++I Sbjct: 245 VTRALADMALTRLGVDKLGLDGADRRYLRLIAENYQGGPVGIETMSAALSESRDALEEVI 304 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY++QQG IQRTPRGR+L AW HLG+ P Sbjct: 305 EPYLLQQGLIQRTPRGRMLAQKAWTHLGMAPPK 337 >gi|254487635|ref|ZP_05100840.1| Holliday junction DNA helicase RuvB [Roseobacter sp. GAI101] gi|214044504|gb|EEB85142.1| Holliday junction DNA helicase RuvB [Roseobacter sp. GAI101] Length = 339 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/312 (66%), Positives = 248/312 (79%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+EF GQ EA SNLKVFI++AK R EA+DH LF GPPGLGKTTLAQ++ARELGV Sbjct: 21 LRPQLLDEFVGQAEARSNLKVFIQSAKQRGEAMDHTLFHGPPGLGKTTLAQIMARELGVG 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPA+EDF+LDL++GEG Sbjct: 81 FRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFELDLVIGEG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY ++L IV R A+ G Sbjct: 141 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTEDELFIIVDRNARKLGA 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA R+RGTPRIAGRLLRRV DFA V +TRE+AD AL RL +D +G D Sbjct: 201 PADEGGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGRVTRELADMALTRLGVDYLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RYL MIA N+ GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTPRGR+L Sbjct: 261 GADRRYLRMIAENYQGGPVGIETMSAALSESRDALEEVIEPFLLQQGLIQRTPRGRMLAQ 320 Query: 322 IAWQHLGIDIPH 333 AW HLG+ P Sbjct: 321 KAWTHLGMAPPK 332 >gi|307294739|ref|ZP_07574581.1| Holliday junction DNA helicase RuvB [Sphingobium chlorophenolicum L-1] gi|306879213|gb|EFN10431.1| Holliday junction DNA helicase RuvB [Sphingobium chlorophenolicum L-1] Length = 339 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 215/331 (64%), Positives = 262/331 (79%), Gaps = 1/331 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M + L+S ED D +L RP++L EF GQ A NL++FIEAAK R EALDHVLF G Sbjct: 1 MSEDRLISSTRRVEDVDAAL-RPKSLAEFIGQQAARENLRIFIEAAKGRGEALDHVLFFG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLAQ+VARE+GV FR+TSGPVIAK+GDLAALLTNL++ DVLF+DEIHRL+ V Sbjct: 60 PPGLGKTTLAQIVAREMGVGFRATSGPVIAKSGDLAALLTNLDEGDVLFVDEIHRLNPAV 119 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMED LDLM+GEGPSARSV+I+L FTL+ ATTR GLLT PL+DRFGIP+RL Sbjct: 120 EEVLYPAMEDRALDLMIGEGPSARSVRIDLPPFTLVGATTRQGLLTTPLRDRFGIPVRLQ 179 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY +++L+ +V+R A+L LA+T + A EIA RSRGTPRIAGRLLRRVRDFA VA A + Sbjct: 180 FYTVDELELVVRRAARLLDLAITSDGAVEIARRSRGTPRIAGRLLRRVRDFANVAGAPAV 239 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 ++ADAAL RL +D +G D +D RYL MIA + GGPVG+ET++AGLSE RD IE++IE Sbjct: 240 DAKVADAALTRLEVDHLGLDLMDRRYLMMIADIYRGGPVGVETLAAGLSEARDTIEEVIE 299 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY+IQ G I RT RGR L W+HLG++ P Sbjct: 300 PYLIQLGLIARTARGRCLNGPGWKHLGLNPP 330 >gi|91205749|ref|YP_538104.1| Holliday junction DNA helicase B [Rickettsia bellii RML369-C] gi|157827124|ref|YP_001496188.1| Holliday junction DNA helicase RuvB [Rickettsia bellii OSU 85-389] gi|123388109|sp|Q1RHZ9|RUVB_RICBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231547|sp|A8GWC4|RUVB_RICB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|91069293|gb|ABE05015.1| Holliday junction DNA helicase RuvB [Rickettsia bellii RML369-C] gi|157802428|gb|ABV79151.1| Holliday junction DNA helicase B [Rickettsia bellii OSU 85-389] Length = 342 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/327 (62%), Positives = 253/327 (77%), Gaps = 1/327 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS SQ D ++ L RP L+EF GQ + NL VFI AAK+R E LDH LF GPPGL Sbjct: 3 SILSPEKSQNDQELPL-RPSYLQEFVGQQQIKENLSVFIRAAKSRGEHLDHTLFYGPPGL 61 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA++++ E+G NF+STSGP I KA DLAA+LTNLE DVLFIDEIHRL+ VEE+L Sbjct: 62 GKTTLAKIISNEIGGNFKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTSVEEVL 121 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF+LD+++GEGP+ARSVKINL +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY Sbjct: 122 YPAMEDFELDIIIGEGPAARSVKINLPQFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LK ++ R +KL + +TD + EIA RSRGTPRIA RLLRR+RDFA V + I +EI Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIARRSRGTPRIALRLLRRIRDFAAVNNQLEIDKEI 241 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A+ L RL +D +G D D RYL IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I Sbjct: 242 ANFGLNRLEVDIIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Q G +QRTPRGR++ A++HL I +P Sbjct: 302 QIGLLQRTPRGRVITATAFEHLKIPLP 328 >gi|294010087|ref|YP_003543547.1| Holliday junction resolvasome helicase subunit [Sphingobium japonicum UT26S] gi|292673417|dbj|BAI94935.1| Holliday junction resolvasome helicase subunit [Sphingobium japonicum UT26S] Length = 339 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 217/331 (65%), Positives = 265/331 (80%), Gaps = 1/331 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M + L+S EDAD +L RP++L EF GQ A NL++FIEAAK R EALDHVLF G Sbjct: 1 MSEDRLISSTRRVEDADAAL-RPKSLAEFIGQQAARENLRIFIEAAKGRGEALDHVLFFG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLAQ+VARE+GV FR+TSGPVIAK+GDLAALLTNL++ DVLF+DEIHRL+ V Sbjct: 60 PPGLGKTTLAQIVAREMGVGFRATSGPVIAKSGDLAALLTNLDEGDVLFVDEIHRLNPAV 119 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMED LDLM+GEGPSARSV+I+L FTL+ ATTR GLLT PL+DRFGIP+RL Sbjct: 120 EEVLYPAMEDRALDLMIGEGPSARSVRIDLPPFTLVGATTRQGLLTTPLRDRFGIPVRLQ 179 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY +++L+ +V+R A+L LA+T + A EIA RSRGTPRIAGRLLRRVRDFA VA A + Sbjct: 180 FYTVDELELVVRRAARLLDLAITSDGAVEIARRSRGTPRIAGRLLRRVRDFANVAGAAAV 239 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 ++ADAAL RL +D +G D +D RYLTMIA + GGPVG+ET++AGLSE RD IE++IE Sbjct: 240 DAKVADAALTRLEVDHLGLDLMDRRYLTMIADIYRGGPVGVETLAAGLSEARDTIEEVIE 299 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY+IQ G I RT RGR L + W+HLG++ P Sbjct: 300 PYLIQLGLIARTARGRCLNALGWKHLGLNPP 330 >gi|296535991|ref|ZP_06898135.1| crossover junction ATP-dependent DNA helicase RuvB [Roseomonas cervicalis ATCC 49957] gi|296263677|gb|EFH10158.1| crossover junction ATP-dependent DNA helicase RuvB [Roseomonas cervicalis ATCC 49957] Length = 342 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 205/320 (64%), Positives = 256/320 (80%), Gaps = 1/320 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S+EDA + LRP+TL++FTGQ NL +FI+AA+ R EALDHVL GPPGLGKTTLAQ Sbjct: 11 SEEDAAEATLRPQTLDDFTGQKALRENLAIFIQAARTRGEALDHVLLHGPPGLGKTTLAQ 70 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VARE+GV FR+TSGPV+ +AGDLAA+LTNL+ RDVLF+DEIHRL +EE LYPAMEDF Sbjct: 71 IVAREMGVGFRATSGPVLQRAGDLAAILTNLQPRDVLFVDEIHRLQPALEETLYPAMEDF 130 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLDL++GEGP+AR+V+I+L FTL+ ATTR GLL PL+DRFGIP+RL FY E+L IV Sbjct: 131 QLDLIIGEGPAARTVRIDLPPFTLVGATTRAGLLATPLRDRFGIPLRLQFYTPEELLLIV 190 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +RGA+ G A+T+E A EIA RSRGTPRIAGRLLRRVRDFA V+ K R +ADAAL R Sbjct: 191 RRGAQKLGFALTEEGAAEIANRSRGTPRIAGRLLRRVRDFALVS-GKPADRAMADAALNR 249 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D RYL IA + GGPVG+ET++A L+E RD +E+++EPY+IQ+GF+ R Sbjct: 250 LEVDGKGLDAMDRRYLRRIAEHHHGGPVGVETLAAALAEGRDTLEEVVEPYLIQEGFVLR 309 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+L +AW+HLG+ P Sbjct: 310 TPRGRVLGDLAWRHLGMSPP 329 >gi|157803863|ref|YP_001492412.1| Holliday junction DNA helicase RuvB [Rickettsia canadensis str. McKiel] gi|166231548|sp|A8EZ44|RUVB_RICCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157785126|gb|ABV73627.1| Holliday junction DNA helicase RuvB [Rickettsia canadensis str. McKiel] Length = 342 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/329 (61%), Positives = 255/329 (77%), Gaps = 1/329 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS S+ D ++ + RP L+EF GQ + NL VFI+AAK+R E LDH LF GPPGL Sbjct: 3 NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGL 61 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA++V+ E+GVNF+STSGP I KA DLAA+LTNLE DVLFIDEIHRL+ VEE+L Sbjct: 62 GKTTLAKIVSNEIGVNFKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTSVEEVL 121 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF+LD+++GEGP+ARSVKINL FTLI ATTR+GLL+NPL+DRFGIP+RLNFY Sbjct: 122 YPAMEDFELDIIIGEGPAARSVKINLPHFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNN 181 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++LK ++ R +KL + +T+ + EIA RSRGTPRIA RLLRR+RDFA V + +EI Sbjct: 182 DELKKVLNRASKLLDIDLTESGSEEIAKRSRGTPRIALRLLRRIRDFAVVDSKSVVDKEI 241 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AD L RL +D +G D D RYL IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I Sbjct: 242 ADFGLNRLEVDHIGLDSNDYRYLKFIAANYNGGPVGIETIAAALSEQRDALEETIEPYLI 301 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 Q G +QRTPRGR++ A++HL + +P++ Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNK 330 >gi|85703559|ref|ZP_01034663.1| Holliday junction DNA helicase RuvB [Roseovarius sp. 217] gi|85672487|gb|EAQ27344.1| Holliday junction DNA helicase RuvB [Roseovarius sp. 217] Length = 344 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 207/318 (65%), Positives = 250/318 (78%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D SL RP+ L EF GQ EA +NL VFI++A+ R +A+DH LF GPPGLGKTTLAQ++ Sbjct: 15 EDQDRSL-RPQALSEFIGQKEARANLAVFIQSARQRGDAMDHTLFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR TSGPV+AKAGDLAA+LTNLE DVLFIDEIHRL+ VEE+LYPAMEDF+L Sbjct: 74 ARELGVGFRMTSGPVLAKAGDLAAILTNLERNDVLFIDEIHRLNPAVEEVLYPAMEDFEL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FYEI++L IV R Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYEIDELHEIVTR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 AKL + E A EIA R+RGTPRIAGRLLRRV DFA V I+R +AD++L RL Sbjct: 194 NAKLLNIPTDTEGAREIARRARGTPRIAGRLLRRVVDFAVVEGGGKISRALADSSLTRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D RYL +IA + GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP Sbjct: 254 VDHLGLDGADRRYLRLIAEAYQGGPVGIETLSAALSESRDALEEVIEPFLLQQGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L W HLG+ P Sbjct: 314 RGRMLAQGGWAHLGLAAP 331 >gi|110679370|ref|YP_682377.1| Holliday junction DNA helicase RuvB [Roseobacter denitrificans OCh 114] gi|123361966|sp|Q168A2|RUVB_ROSDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|109455486|gb|ABG31691.1| Holliday junction DNA helicase RuvB [Roseobacter denitrificans OCh 114] Length = 340 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/318 (65%), Positives = 250/318 (78%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP+ L EF GQ EA +NLKVFI +A+ R EA+DH LF GPPGLGKTTLAQ++ Sbjct: 15 EDHDRAL-RPQMLSEFVGQAEARANLKVFIASARQRGEAMDHTLFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPA+EDF+L Sbjct: 74 ARELGVGFRMTSGPVLAKAGDLAAILTNLEKRDVLFIDEIHRLNPAVEEVLYPALEDFEL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY ++L IV R Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTEDELFIIVDR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A+ G + A EIA R+RGTPRIAGRLLRRV DFA V +TR +AD AL RL Sbjct: 194 NARKLGAPADEGGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGRVTRALADMALNRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D RYL +IA N+GGGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP Sbjct: 254 VDHLGLDGADRRYLRLIAENYGGGPVGIETMSAALSESRDALEEVIEPFLLQQGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L W HLG+D P Sbjct: 314 RGRMLAQKGWTHLGLDAP 331 >gi|16127466|ref|NP_422030.1| Holliday junction DNA helicase B [Caulobacter crescentus CB15] gi|221236279|ref|YP_002518716.1| Holliday junction DNA helicase RuvB [Caulobacter crescentus NA1000] gi|20140205|sp|Q9A3G8|RUVB_CAUCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767417|sp|B8H454|RUVB_CAUCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|13424920|gb|AAK25198.1| Holliday junction DNA helicase RuvB [Caulobacter crescentus CB15] gi|220965452|gb|ACL96808.1| Holliday junction DNA helicase ruvB [Caulobacter crescentus NA1000] Length = 346 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 205/311 (65%), Positives = 246/311 (79%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL EF GQ +A NL+VFIEAAK R EALDHVL GPPGLGKTTLAQ+VARELGVN Sbjct: 21 LRPQTLAEFVGQEQAKGNLRVFIEAAKGRGEALDHVLLFGPPGLGKTTLAQIVARELGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR+TSGPV+ K GDLAA+LTNLE DVLFIDEIHRLS VEEILYPAMED LDL++GEG Sbjct: 81 FRATSGPVLNKPGDLAAILTNLEANDVLFIDEIHRLSSNVEEILYPAMEDHVLDLVIGEG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+AATTR G+L PL+DRFGIPIRL FY +L+ ++Q A+ G Sbjct: 141 PSARSIRIDLAPFTLVAATTRAGMLATPLRDRFGIPIRLEFYTPAELRHVLQHAARKMGA 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +TD+ A EIA R+RGTPR+AGRLLRRVRDFA A I R+ A AL RL +D+ G D Sbjct: 201 PLTDDGADEIAKRARGTPRVAGRLLRRVRDFATADGADRIDRKAAAMALARLEVDESGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD RYL + N+GGGPVG+ETI+ ++E RDA+ED+IEPY++QQGFIQRTPRGR+ Sbjct: 261 SLDRRYLRAMIENYGGGPVGVETIAYAIAEARDAVEDVIEPYLMQQGFIQRTPRGRMACG 320 Query: 322 IAWQHLGIDIP 332 A+ HLG+ P Sbjct: 321 KAYLHLGLTPP 331 >gi|260576654|ref|ZP_05844641.1| Holliday junction DNA helicase RuvB [Rhodobacter sp. SW2] gi|259021139|gb|EEW24448.1| Holliday junction DNA helicase RuvB [Rhodobacter sp. SW2] Length = 344 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 205/333 (61%), Positives = 259/333 (77%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M L + ++ AD+ LRP+ L +F GQ EA +NL+VFI++AK R EA+DH LF Sbjct: 1 MTSNPTLRPEKLPEDAADLDRALRPQMLADFVGQAEARANLRVFIDSAKMRGEAMDHTLF 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLAQ++ARELGV FR TSGPV+A+AGDLAA+LTNLE RDVLFIDEIHRLS Sbjct: 61 HGPPGLGKTTLAQIMARELGVGFRMTSGPVLARAGDLAAILTNLEPRDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPA+EDF LDL++GEGP+AR+V+I+L FTL+ ATTR+GLLT PL+DRFGIP R Sbjct: 121 VVEEVLYPALEDFALDLVIGEGPAARTVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++L IV RGA+L G+ + EIA R+RGTPRIAGRLLRRV DF V Sbjct: 181 LQFYTEDELDLIVTRGARLLGIPADPDGTREIARRARGTPRIAGRLLRRVVDFVLVEGDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 +T+ IAD AL RL +D +G D D RY++++A N+GGGPVG+ETI A LSE RD+IE++ Sbjct: 241 RLTQAIADRALTRLGVDHLGLDGADRRYMSLLADNYGGGPVGVETIGAALSESRDSIEEV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 IEP+++QQG IQRTPRGR+L AW+HLG++ P Sbjct: 301 IEPFLLQQGLIQRTPRGRMLAAKAWRHLGLEAP 333 >gi|238020684|ref|ZP_04601110.1| hypothetical protein GCWU000324_00574 [Kingella oralis ATCC 51147] gi|237867664|gb|EEP68670.1| hypothetical protein GCWU000324_00574 [Kingella oralis ATCC 51147] Length = 343 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 205/325 (63%), Positives = 250/325 (76%), Gaps = 1/325 (0%) Query: 9 SRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 ++N+S QE+ LRP+TL ++ GQ +A L +FI AAK R+EALDH L GPPGLGK Sbjct: 18 AQNLSAQEEQLERALRPKTLADYIGQHKAKEQLAIFIAAAKKRSEALDHSLLFGPPGLGK 77 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++ARELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYP Sbjct: 78 TTLANIIARELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYP 137 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+QLD+M+GEGP+ARSVKI+L FTLI ATTR G+LTNPL+DRFGI RL FYE D Sbjct: 138 AMEDYQLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVARLEFYETRD 197 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV R A+L G+ + + A EIA RSRGTPRIA RLLRRVRD+AEV H +IT IAD Sbjct: 198 LATIVARSAQLLGMDLDEHGALEIARRSRGTPRIANRLLRRVRDYAEVKHTGSITAPIAD 257 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AAL L +DK+G D +D ++L + F GGPVG++ I+A + E D IED+IEPY+IQQ Sbjct: 258 AALSMLDVDKIGLDMMDRKFLEAVLHKFSGGPVGLDNIAAAIGESTDTIEDVIEPYLIQQ 317 Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332 GF+QRTPRGR+ A++H G+ P Sbjct: 318 GFLQRTPRGRMATAGAFEHFGLTAP 342 >gi|114800414|ref|YP_758881.1| Holliday junction DNA helicase RuvB [Hyphomonas neptunium ATCC 15444] gi|123028468|sp|Q0C5W2|RUVB_HYPNA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|114740588|gb|ABI78713.1| Holliday junction DNA helicase RuvB [Hyphomonas neptunium ATCC 15444] Length = 344 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 206/333 (61%), Positives = 258/333 (77%), Gaps = 2/333 (0%) Query: 2 MDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M REG LS N DA LRP+T E++ GQ +A +NLKV++EAA+ R EALDHVL Sbjct: 1 MSREGALSDPNAQGGDALDRALRPQTFEDYVGQRKAKANLKVYVEAARGRKEALDHVLLF 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++ARE+GV FR+TSGPVIAKAGDLAA+LTNLE DVLFIDEIHRL I Sbjct: 61 GPPGLGKTTLAQILAREMGVGFRATSGPVIAKAGDLAAILTNLEPNDVLFIDEIHRLPAI 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMED+ LDL++GEGP+ARSV+++L+ FTL+ ATTR GLL PL+DRFGIP+RL Sbjct: 121 VEEILYPAMEDYALDLVIGEGPAARSVRLDLAPFTLVGATTRAGLLATPLRDRFGIPVRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FYE E+L IV A+ G+ +T++ A EI+ R+RGTPRIA RLLRRVRDFAE A Sbjct: 181 EFYEPEELGRIVMAAARKLGVPITEDGAVEISARARGTPRIALRLLRRVRDFAE-AEGAD 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R A AL RL ID+ G D LD RYL + + + GGPVG +T++A LSE RDA+ED+I Sbjct: 240 INRASAARALKRLEIDEDGLDALDRRYLHALVKTYAGGPVGADTLAAALSEARDAVEDVI 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY++Q+G++ RTPRGR+ P+A++ LG+ P+ Sbjct: 300 EPYLMQKGYVARTPRGRVAAPLAYERLGLKAPN 332 >gi|163733515|ref|ZP_02140958.1| Holliday junction DNA helicase B [Roseobacter litoralis Och 149] gi|161393303|gb|EDQ17629.1| Holliday junction DNA helicase B [Roseobacter litoralis Och 149] Length = 340 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 206/318 (64%), Positives = 250/318 (78%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP+ L+EF GQ + +NLKVFI +A+ R EA+DH LF GPPGLGKTTLAQ++ Sbjct: 15 EDHDRAL-RPQVLDEFVGQADVRANLKVFIASARQRGEAMDHTLFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPA+EDF+L Sbjct: 74 ARELGVGFRMTSGPVLAKAGDLAAILTNLEKRDVLFIDEIHRLNPAVEEVLYPALEDFEL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY ++L IV+R Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTEDELFIIVER 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A+ G A EIA R+RGTPRIAGRLLRRV DFA V +TRE+AD AL RL Sbjct: 194 NARKLGAPADQGGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGRVTRELADMALNRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D RYL +IA N+ GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP Sbjct: 254 VDHLGLDGADRRYLRLIAENYAGGPVGIETMSAALSESRDALEEVIEPFLLQQGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L W HLG+D P Sbjct: 314 RGRMLAQKGWTHLGLDAP 331 >gi|46204582|ref|ZP_00209471.1| COG2255: Holliday junction resolvasome, helicase subunit [Magnetospirillum magnetotacticum MS-1] Length = 293 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 207/287 (72%), Positives = 246/287 (85%), Gaps = 1/287 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 +D D S+ RP +L EF GQ A +N+++FIEAAK +ALDHVLFVGPPGLGKTTLAQ+V Sbjct: 8 DDVDQSI-RPLSLAEFIGQRAARANMQIFIEAAKKTGQALDHVLFVGPPGLGKTTLAQIV 66 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+ VEEILYPAMED+QL Sbjct: 67 ARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDYQL 126 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI++L+ IV+R Sbjct: 127 DLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEIDELELIVRR 186 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ GL +++E A EIA R+RGTPRIAGRLLRRVRDFA V A+T++R IAD AL L Sbjct: 187 GARVLGLGMSEEGANEIAKRARGTPRIAGRLLRRVRDFAIVEEAQTVSRAIADRALQMLD 246 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 +D +G D +D +YLT+IA +FGGGPVGIETI+A LSEPRDAIED+IE Sbjct: 247 VDPVGLDVMDRKYLTLIASSFGGGPVGIETIAAALSEPRDAIEDIIE 293 >gi|149203739|ref|ZP_01880708.1| Holliday junction DNA helicase B [Roseovarius sp. TM1035] gi|149142856|gb|EDM30898.1| Holliday junction DNA helicase B [Roseovarius sp. TM1035] Length = 342 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 206/318 (64%), Positives = 250/318 (78%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D SL RP+ L EF GQ EA +NL VFI++A+ R +A+DH LF GPPGLGKTTLAQ++ Sbjct: 15 EDQDRSL-RPQALSEFIGQREARANLAVFIQSARQRGDAMDHTLFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR TSGPV+AKAGDLAA+LTNLE DVLFIDEIHRL+ VEE+LYPAMEDF+L Sbjct: 74 ARELGVGFRMTSGPVLAKAGDLAAILTNLERNDVLFIDEIHRLNPAVEEVLYPAMEDFEL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FYEI++L IV R Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYEIDELHEIVTR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 AKL + + A EIA R+RGTPRIAGRLLRRV DFA V I+R +AD++L RL Sbjct: 194 NAKLLNIPTDPDGAREIARRARGTPRIAGRLLRRVVDFAVVEGGGKISRALADSSLTRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D RYL +IA + GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP Sbjct: 254 VDHLGLDGADRRYLRLIAEAYQGGPVGIETLSAALSESRDALEEVIEPFLLQQGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L W HLG+ P Sbjct: 314 RGRMLAQGGWAHLGLAAP 331 >gi|295688117|ref|YP_003591810.1| Holliday junction DNA helicase Ruvb [Caulobacter segnis ATCC 21756] gi|295430020|gb|ADG09192.1| Holliday junction DNA helicase RuvB [Caulobacter segnis ATCC 21756] Length = 346 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 203/311 (65%), Positives = 246/311 (79%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL EF GQ +A NL+VFIEAAK R EALDHVL GPPGLGKTTLAQ+VARELGVN Sbjct: 21 LRPQTLAEFVGQEQAKGNLRVFIEAAKGRGEALDHVLLFGPPGLGKTTLAQIVARELGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR+TSGPV+ K GDLAA+LTNLE DVLFIDEIHRLS VEEILYPAMED LDL++GEG Sbjct: 81 FRATSGPVLNKPGDLAAILTNLEANDVLFIDEIHRLSSNVEEILYPAMEDHVLDLVIGEG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+AATTR G+L PL+DRFGIPIRL FY +L+ ++Q A+ G Sbjct: 141 PSARSIRIDLAPFTLVAATTRAGMLATPLRDRFGIPIRLEFYTPAELRHVLQHAARKMGA 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++D+ A EIA R+RGTPR+AGRLLRRVRDFA A I R+ A AL RL +D+ G D Sbjct: 201 PLSDDGADEIAKRARGTPRVAGRLLRRVRDFATADGATVIDRKAAGLALARLEVDESGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD RYL + ++GGGPVG+ETI+ ++E RDA+ED+IEPY++QQGFIQRTPRGR+ Sbjct: 261 SLDRRYLRAMIEHYGGGPVGVETIAYAIAEARDAVEDVIEPYLMQQGFIQRTPRGRMACG 320 Query: 322 IAWQHLGIDIP 332 A+ HLG+ P Sbjct: 321 KAYLHLGLTPP 331 >gi|239947234|ref|ZP_04698987.1| holliday junction DNA helicase RuvB [Rickettsia endosymbiont of Ixodes scapularis] gi|239921510|gb|EER21534.1| holliday junction DNA helicase RuvB [Rickettsia endosymbiont of Ixodes scapularis] Length = 342 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/329 (60%), Positives = 254/329 (77%), Gaps = 1/329 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS S+ D ++ + RP L+EF GQ + NL VFI+AAK+R E LDH LF GPPGL Sbjct: 3 NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA++++ E+G NF+STSGP I KA DLAA+LTNLE DVLFIDEIHRL+ VEE+L Sbjct: 62 GKTTLAKIISNEIGGNFKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF+LD+++GEGP+ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY Sbjct: 122 YSAMEDFELDIIIGEGPAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LK ++ R +KL + +TD + EIA RSRGTPRIA RLLRR+RDFA V + +EI Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 +D L RL +D++G D D RYL IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I Sbjct: 242 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 Q G +QRTPRGR++ A++HL + IP++ Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPIPNQ 330 >gi|67458998|ref|YP_246622.1| Holliday junction DNA helicase B [Rickettsia felis URRWXCal2] gi|75536566|sp|Q4ULW6|RUVB_RICFE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|67004531|gb|AAY61457.1| Holliday junction DNA helicase RuvB [Rickettsia felis URRWXCal2] Length = 342 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 196/313 (62%), Positives = 246/313 (78%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+EF GQ + NL VFI+AAK+R E LDH LF GPPGLGKTTLA++++ E+G N Sbjct: 18 IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGGN 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+STSGP I KA DLAA+LTNLE DVLFIDEIHRL+ VEE+LYPAMEDF+LD+++GEG Sbjct: 78 FKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTAVEEVLYPAMEDFELDIIIGEG 137 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY E+LK ++ R +KL + Sbjct: 138 PAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNTEELKKVLNRASKLFDI 197 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +TD + EIA RSRGTPRIA RLLRR+RDFA V + +EI+D L RL +D +G D Sbjct: 198 DLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEISDFGLNRLEVDHIGLD 257 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RYL IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+IQ G +QRTPRGR++ Sbjct: 258 SNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLIQIGLLQRTPRGRVITI 317 Query: 322 IAWQHLGIDIPHR 334 A++HL + IP++ Sbjct: 318 AAFEHLKMPIPNQ 330 >gi|149915611|ref|ZP_01904137.1| Holliday junction DNA helicase RuvB [Roseobacter sp. AzwK-3b] gi|149810503|gb|EDM70346.1| Holliday junction DNA helicase RuvB [Roseobacter sp. AzwK-3b] Length = 342 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/318 (65%), Positives = 250/318 (78%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED+D SL RP+ L EF GQ EA +NL++FI++A+ R EA+DH LF GPPGLGKTTLAQ++ Sbjct: 15 EDSDRSL-RPQALSEFIGQAEARANLRIFIQSARQRGEAMDHTLFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 +RELGV FR TSGPV+AKAGDLAA+LTNLE DVLFIDEIHRL+ VEE+LYPAMEDF+L Sbjct: 74 SRELGVGFRMTSGPVLAKAGDLAAILTNLERNDVLFIDEIHRLNPAVEEVLYPAMEDFEL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY ++L IV R Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLEFYTEDELHEIVTR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L E A EIA R+RGTPRIAGRLLRRV DFA V ITR++AD AL RL Sbjct: 194 NAVLLNAPADTEGAREIARRARGTPRIAGRLLRRVVDFALVEGDGRITRDLADHALTRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +DK+G D D RYL +IA + GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP Sbjct: 254 VDKLGLDGADRRYLRLIAEAYQGGPVGIETLSAALSESRDALEEVIEPFLLQQGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L AW HLG+ P Sbjct: 314 RGRMLAQRAWAHLGMAPP 331 >gi|332967834|gb|EGK06933.1| crossover junction ATP-dependent DNA helicase RuvB [Kingella kingae ATCC 23330] Length = 344 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/317 (63%), Positives = 243/317 (76%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+ LRP+ L ++ GQ +A L +FIEAAK R EALDH L GPPGLGKTTLA Sbjct: 23 SQEEQLERALRPKLLSDYIGQRKAKEQLGIFIEAAKKRGEALDHTLLFGPPGLGKTTLAN 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VARELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+ Sbjct: 83 IVARELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPAMEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARSVKI+L FTLI ATTR G+LTNPL+DRFGI RL FYE DL TIV Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVARLEFYETADLATIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A+L + + + A E+A RSRGTPRIA RLLRRVRD+AEV HA I +ADAAL Sbjct: 203 RRSAQLLNMTLDKQGAWEVARRSRGTPRIANRLLRRVRDYAEVKHAGKIDANVADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +DK+G D +D ++L + F GGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDKIGLDMMDRKFLEAVLHKFSGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR+ A++H G+ Sbjct: 323 TPRGRMATASAFEHFGL 339 >gi|167644752|ref|YP_001682415.1| Holliday junction DNA helicase RuvB [Caulobacter sp. K31] gi|189046023|sp|B0SUN9|RUVB_CAUSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|167347182|gb|ABZ69917.1| Holliday junction DNA helicase RuvB [Caulobacter sp. K31] Length = 348 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/311 (63%), Positives = 246/311 (79%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL EF GQ +A +NL++FIEAAK R EALDHVL GPPGLGKTTLAQ+VARELGVN Sbjct: 23 LRPQTLAEFVGQEQAKANLRIFIEAAKGRGEALDHVLLFGPPGLGKTTLAQIVARELGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRL VEEILYPAMED LDL++GEG Sbjct: 83 FRATSGPVLNKAGDLAAILTNLEANDVLFIDEIHRLPSTVEEILYPAMEDHVLDLVIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+AATTR G+L PL+DRFGIPIRL FY ++L+ ++ A+ G Sbjct: 143 PSARSIRIDLAPFTLVAATTRAGMLATPLRDRFGIPIRLEFYTPKELQHVLLGAARKMGA 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A EIA R+RGTPR+AGRLLRRVRDFA A I R+ A AL RL +D++G D Sbjct: 203 PLNEDGAAEIAARARGTPRVAGRLLRRVRDFASADGASVIDRKAAGMALARLEVDELGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD RYL + N+GGGP G+ET++ ++E RDA+ED+IEPY++QQGFIQRTPRGR+ Sbjct: 263 SLDRRYLRALIENYGGGPAGVETLAYAIAEARDAVEDVIEPYLMQQGFIQRTPRGRMACG 322 Query: 322 IAWQHLGIDIP 332 A+ HLG+ P Sbjct: 323 KAYLHLGLTEP 333 >gi|163745819|ref|ZP_02153178.1| Holliday junction DNA helicase B [Oceanibulbus indolifex HEL-45] gi|161380564|gb|EDQ04974.1| Holliday junction DNA helicase B [Oceanibulbus indolifex HEL-45] Length = 339 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 206/318 (64%), Positives = 250/318 (78%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP+ L EF GQ EA +NL VFI++A+ R EA+DH LF GPPGLGKTTLAQ++ Sbjct: 15 EDFDRAL-RPQMLAEFVGQAEARANLAVFIQSARQRGEAMDHTLFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPA+EDF+L Sbjct: 74 ARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFEL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY ++L IV R Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTEDELFIIVDR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A+ G + A EIA R+RGTPRIAGRLLRRV DFA V +T+E+AD AL RL Sbjct: 194 NARKLGAPADEGGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGRVTQELADMALTRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D RYL +IA N+ GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP Sbjct: 254 VDHLGLDGADRRYLKLIAENYQGGPVGIETLSAALSESRDALEEVIEPFLLQQGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L AW HLG+ P Sbjct: 314 RGRMLAAKAWTHLGMAAP 331 >gi|165933118|ref|YP_001649907.1| Holliday junction DNA helicase RuvB [Rickettsia rickettsii str. Iowa] gi|165908205|gb|ABY72501.1| Holliday junction DNA helicase [Rickettsia rickettsii str. Iowa] Length = 354 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 196/329 (59%), Positives = 253/329 (76%), Gaps = 1/329 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS S+ D ++ + RP L+EF GQ + NL VFI+AAK+R E LDH LF GPPGL Sbjct: 15 NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 73 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA++++ E+G NF+STSGP I K DLAA+LTNLE DVLFIDEIHRL+ VEE+L Sbjct: 74 GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 133 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY Sbjct: 134 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 193 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LK ++ R +KL + +TD + EIA RSRGTPRIA RLLRR+RDFA V + +E+ Sbjct: 194 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVEGKSRVDKEV 253 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 +D L RL +D++G D D RYL IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I Sbjct: 254 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 313 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 Q G +QRTPRGR++ A++HL + +P++ Sbjct: 314 QIGLLQRTPRGRVITIAAFEHLKMSVPNQ 342 >gi|83950116|ref|ZP_00958849.1| Holliday junction DNA helicase RuvB [Roseovarius nubinhibens ISM] gi|83838015|gb|EAP77311.1| Holliday junction DNA helicase RuvB [Roseovarius nubinhibens ISM] Length = 342 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/318 (64%), Positives = 249/318 (78%), Gaps = 1/318 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP+ LE+F GQ EA SNL++FI++A+ R EA+DH LF GPPGLGKTTLAQ++ Sbjct: 15 EDFDRAL-RPQALEDFIGQAEARSNLRIFIQSARQRGEAMDHTLFHGPPGLGKTTLAQIM 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPA+EDF+L Sbjct: 74 ARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFEL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY +E+L IV R Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTVEELNEIVWR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + + A EIA RSRGTPRIAGRLLRRV DFA V IT+ +AD AL RL Sbjct: 194 NADKLKVPAERDGAMEIARRSRGTPRIAGRLLRRVVDFAVVEGDGKITKALADNALTRLG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D RYL +IA + GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP Sbjct: 254 VDHLGLDGADRRYLRLIAEAYQGGPVGIETLSAALSESRDALEEVIEPFLLQQGLIQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+L W HLG+ P Sbjct: 314 RGRMLAQGGWTHLGLAPP 331 >gi|84501646|ref|ZP_00999818.1| Holliday junction DNA helicase RuvB [Oceanicola batsensis HTCC2597] gi|84390267|gb|EAQ02826.1| Holliday junction DNA helicase RuvB [Oceanicola batsensis HTCC2597] Length = 342 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/319 (63%), Positives = 250/319 (78%), Gaps = 1/319 (0%) Query: 15 EDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 EDA D LRP+TL++F GQ EA +NL+VF+++A+ R EA+DH LF GPPGLGKTTLAQ+ Sbjct: 14 EDAEDTRALRPQTLDDFIGQREARANLRVFVQSARQRGEAMDHTLFHGPPGLGKTTLAQI 73 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEE+LYPA+EDF+ Sbjct: 74 MARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFE 133 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LDL++GEGP+AR+V+I L FTL+ ATTR+GLLT PL+DRFGIP RL FY ++L IV Sbjct: 134 LDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTEDELHEIVT 193 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A+ G + A EIA R+RGTPRIAGRLLRRV DFA V ITR++AD AL RL Sbjct: 194 RNARKLGAPADADGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGRITRDLADNALTRL 253 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +G D D RYL MI ++ GGPVGIET+ A LSE RD++E++IEPY++QQ IQRT Sbjct: 254 GVDNLGLDGADRRYLKMIGEDYQGGPVGIETLCAALSESRDSVEEVIEPYLLQQALIQRT 313 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+L W H+G+ P Sbjct: 314 PRGRMLAARGWAHIGLPPP 332 >gi|157828408|ref|YP_001494650.1| Holliday junction DNA helicase RuvB [Rickettsia rickettsii str. 'Sheila Smith'] gi|166231549|sp|A8GRW7|RUVB_RICRS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157800889|gb|ABV76142.1| Holliday junction DNA helicase B [Rickettsia rickettsii str. 'Sheila Smith'] Length = 342 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 196/329 (59%), Positives = 253/329 (76%), Gaps = 1/329 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS S+ D ++ + RP L+EF GQ + NL VFI+AAK+R E LDH LF GPPGL Sbjct: 3 NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA++++ E+G NF+STSGP I K DLAA+LTNLE DVLFIDEIHRL+ VEE+L Sbjct: 62 GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LK ++ R +KL + +TD + EIA RSRGTPRIA RLLRR+RDFA V + +E+ Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVEGKSRVDKEV 241 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 +D L RL +D++G D D RYL IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I Sbjct: 242 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 Q G +QRTPRGR++ A++HL + +P++ Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMSVPNQ 330 >gi|238650927|ref|YP_002916783.1| Holliday junction DNA helicase B [Rickettsia peacockii str. Rustic] gi|259495677|sp|C4K2D4|RUVB_RICPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238625025|gb|ACR47731.1| Holliday junction DNA helicase B [Rickettsia peacockii str. Rustic] Length = 342 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/329 (59%), Positives = 253/329 (76%), Gaps = 1/329 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS S+ D ++ + RP L+EF GQ + NL VFI+AAK+R E LDH LF GPPGL Sbjct: 3 NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA++++ E+G NF+STSGP I K DLAA+LTNLE DVLFIDEIHRL+ VEE+L Sbjct: 62 GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LK ++ R +KL + +TD + EIA RSRGTPRIA RLLRR+RDFA V + +EI Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 +D L RL +D++G D D RYL IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I Sbjct: 242 SDFGLKRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 Q G +QRTPRGR++ A++HL + +P++ Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 330 >gi|34580549|ref|ZP_00142029.1| holliday junction DNA helicase RuvB [Rickettsia sibirica 246] gi|28261934|gb|EAA25438.1| holliday junction DNA helicase RuvB [Rickettsia sibirica 246] Length = 342 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/329 (59%), Positives = 253/329 (76%), Gaps = 1/329 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS S+ D ++ + RP L+EF GQ + NL VFI+AAK+R E LDH LF GPPGL Sbjct: 3 NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA++++ E+G NF+STSGP I K DLAA+LTNLE DVLFIDEIHRL+ VEE+L Sbjct: 62 GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LK ++ R +KL + +TD + EIA RSRGTPRIA RLLRR+RDFA V + +EI Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 +D L RL +D++G D D RYL IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I Sbjct: 242 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 Q G +QRTPRGR++ A++HL + +P++ Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 330 >gi|157964466|ref|YP_001499290.1| Holliday junction DNA helicase RuvB [Rickettsia massiliae MTU5] gi|172045665|sp|A8F1F7|RUVB_RICM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157844242|gb|ABV84743.1| Holliday junction DNA helicase RuvB [Rickettsia massiliae MTU5] Length = 353 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 198/328 (60%), Positives = 253/328 (77%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 LLS S+ D ++ + RP L+EF GQ + NL VFI+AAK+R E LDH LF GPPGLG Sbjct: 15 LLSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLG 73 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA++++ E+G NF+STSGP I K DLAA+LTNLE DVLFIDEIHRL+ VEE+LY Sbjct: 74 KTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLERNDVLFIDEIHRLNTAVEEVLY 133 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY E Sbjct: 134 PAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNTE 193 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +LK ++ R +KL + +TD + EIA RSRGTPRIA RLLRR+RDFA V + +EI+ Sbjct: 194 ELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEIS 253 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D L RL +D++G D D RYL IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+IQ Sbjct: 254 DFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLIQ 313 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 G +QRTPRGR++ A++HL + +P++ Sbjct: 314 IGLLQRTPRGRVITIAAFEHLKMPVPNQ 341 >gi|157825660|ref|YP_001493380.1| Holliday junction DNA helicase RuvB [Rickettsia akari str. Hartford] gi|166231546|sp|A8GN97|RUVB_RICAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157799618|gb|ABV74872.1| Holliday junction DNA helicase B [Rickettsia akari str. Hartford] Length = 342 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/329 (60%), Positives = 253/329 (76%), Gaps = 1/329 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS S D ++ + RP L+EF GQ + NL VFI+AAK+R + LDH LF GPPGL Sbjct: 3 NILSPEKSDNDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNQHLDHTLFYGPPGL 61 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA++++ E+G NF+STSGP I KA DLAA+LTNLE DVLFIDEIHRL+ VEEIL Sbjct: 62 GKTTLAKIISNEIGGNFKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTAVEEIL 121 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF+LD+++GEGP+ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY Sbjct: 122 YPAMEDFELDIIIGEGPAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LK ++ R +KL + +TD + EIA RSRGTPRIA RLLRR+RDFA V + +EI Sbjct: 182 EELKKVLNRASKLFDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 +D L RL +D +G D D RYL IA ++ GGPVGIETI+A LSE RDA+E+ IEPY+I Sbjct: 242 SDFGLKRLEVDLIGLDSNDYRYLKFIADHYNGGPVGIETIAAALSEERDALEETIEPYLI 301 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 Q G +QRTPRGR++ A++HL + IP++ Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPIPNQ 330 >gi|294788244|ref|ZP_06753487.1| holliday junction DNA helicase RuvB [Simonsiella muelleri ATCC 29453] gi|294483675|gb|EFG31359.1| holliday junction DNA helicase RuvB [Simonsiella muelleri ATCC 29453] Length = 344 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 195/308 (63%), Positives = 243/308 (78%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL ++ GQ +A + L +FI+AAK R EALDH L GPPGLGKTTLA ++ARELGVN Sbjct: 32 LRPKTLADYIGQDKAKTQLAIFIQAAKNRGEALDHTLLFGPPGLGKTTLANIMARELGVN 91 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG Sbjct: 92 LRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 151 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY+ +DL TIV R A+L + Sbjct: 152 PAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYKNKDLATIVARSAQLLNM 211 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A EIA RSRGTPRIA RLLRRVRD+AEV H+ +I +IADAAL L +DK+G D Sbjct: 212 DLDEQGAWEIACRSRGTPRIANRLLRRVRDYAEVLHSGSIDAKIADAALSMLDVDKIGLD 271 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D ++L + F GGPVG++ ++A + E D IED+IEPY+IQQGF+QRTPRGR+ Sbjct: 272 MMDRKFLEAVLHKFAGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQRTPRGRMATD 331 Query: 322 IAWQHLGI 329 A+ H G+ Sbjct: 332 AAYSHFGL 339 >gi|167623852|ref|YP_001674146.1| Holliday junction DNA helicase RuvB [Shewanella halifaxensis HAW-EB4] gi|189046049|sp|B0TSA7|RUVB_SHEHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|167353874|gb|ABZ76487.1| Holliday junction DNA helicase RuvB [Shewanella halifaxensis HAW-EB4] Length = 337 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/311 (63%), Positives = 245/311 (78%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E+TGQ + + LK+FIEAA+ R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 25 MRPKMLDEYTGQDDTRAQLKIFIEAAQKRGEALDHMLIYGPPGLGKTTLAMIVANEMGVN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG Sbjct: 85 IKSTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G LT+PL+ RFGIP+RL FY ++DL +IV R AK+ L Sbjct: 145 PAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNVKDLSSIVARSAKVMAL 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DE A EIA RSRGTPRIA RLLRRVRDFAEV H+ +T+ IA+AAL L +D GFD Sbjct: 205 EIDDEGAVEIARRSRGTPRIANRLLRRVRDFAEVKHSGDVTKVIAEAALDMLDVDAEGFD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+ P Sbjct: 265 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRIATP 324 Query: 322 IAWQHLGIDIP 332 A+ H I P Sbjct: 325 RAYNHFNIIKP 335 >gi|229586658|ref|YP_002845159.1| Holliday junction DNA helicase RuvB [Rickettsia africae ESF-5] gi|259495676|sp|C3PNA6|RUVB_RICAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|228021708|gb|ACP53416.1| Holliday junction DNA helicase RuvB [Rickettsia africae ESF-5] Length = 342 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/329 (59%), Positives = 252/329 (76%), Gaps = 1/329 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS S+ D ++ + RP L+EF GQ + NL VFI+AAK+R E LDH LF GPPGL Sbjct: 3 NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA++++ E+G NF+STSGP I K DLAA+LTNLE DVLFIDEIHRL+ +EE+L Sbjct: 62 GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAIEEVL 121 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LK ++ R +KL + +TD + EIA RSRGTPRIA RLLRR+RDFA V + +EI Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 +D L RL +D +G D D RYL IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I Sbjct: 242 SDFGLNRLEVDCIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 Q G +QRTPRGR++ A++HL + +P++ Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 330 >gi|20140117|sp|Q92I87|RUVB_RICCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB Length = 342 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/329 (59%), Positives = 252/329 (76%), Gaps = 1/329 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS S+ D ++ + RP L+EF GQ + NL VFI+AAK+R E LDH LF GPPGL Sbjct: 3 NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA++++ E+G NF+STSGP I K DLAA+LTNLE DVLFIDEIHRL+ VEE+L Sbjct: 62 GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +LK ++ R +KL + +TD + EIA RSRGTPRIA RLLRR+RDFA V + +EI Sbjct: 182 GELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 +D L RL +D++G D D RYL IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I Sbjct: 242 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 Q G +QRTPRGR++ A++HL + +P++ Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 330 >gi|15892456|ref|NP_360170.1| Holliday junction DNA helicase B [Rickettsia conorii str. Malish 7] gi|15619611|gb|AAL03071.1| holliday junction DNA helicase RuvB [Rickettsia conorii str. Malish 7] Length = 354 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/329 (59%), Positives = 252/329 (76%), Gaps = 1/329 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS S+ D ++ + RP L+EF GQ + NL VFI+AAK+R E LDH LF GPPGL Sbjct: 15 NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 73 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA++++ E+G NF+STSGP I K DLAA+LTNLE DVLFIDEIHRL+ VEE+L Sbjct: 74 GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 133 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY Sbjct: 134 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 193 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +LK ++ R +KL + +TD + EIA RSRGTPRIA RLLRR+RDFA V + +EI Sbjct: 194 GELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 253 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 +D L RL +D++G D D RYL IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I Sbjct: 254 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 313 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 Q G +QRTPRGR++ A++HL + +P++ Sbjct: 314 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 342 >gi|298368822|ref|ZP_06980140.1| holliday junction DNA helicase RuvB [Neisseria sp. oral taxon 014 str. F0314] gi|298282825|gb|EFI24312.1| holliday junction DNA helicase RuvB [Neisseria sp. oral taxon 014 str. F0314] Length = 343 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/319 (62%), Positives = 244/319 (76%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+ LRP+TL ++ GQ +A L +FI+AAK R EALDH L GPPGLGKTTLA Sbjct: 23 SQEELLERALRPKTLNDYIGQTKAKDQLAIFIQAAKKRGEALDHTLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARSVKI+L FTLI ATTR G+LTNPL+DRFGI RL FYE +DL TIV Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYEDKDLATIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L + + A E+A RSRGTPRIA RLLRRVRD+A+V + I EIADAAL+ Sbjct: 203 SRSAQLLQLNMGSDGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVIDAEIADAALIM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L I FGGGPVG++ I+A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAQGLDVMDRKFLEAILHKFGGGPVGLDNIAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ ++ H G+ I Sbjct: 323 TPRGRVATERSYLHFGLKI 341 >gi|329113835|ref|ZP_08242606.1| Holliday junction ATP-dependent DNA helicase RuvB [Acetobacter pomorum DM001] gi|326696845|gb|EGE48515.1| Holliday junction ATP-dependent DNA helicase RuvB [Acetobacter pomorum DM001] Length = 358 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/321 (64%), Positives = 247/321 (76%), Gaps = 2/321 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +ED S LRP+TL +FTGQ + NL +FI+AAK R +ALDHVL GPPGLGKTTLAQ+ Sbjct: 17 EEDVGESTLRPQTLHDFTGQKASRENLSIFIKAAKQRGDALDHVLLHGPPGLGKTTLAQI 76 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL +EEILYPAMEDFQ Sbjct: 77 VARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEILYPAMEDFQ 136 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LDL++GEGP+ARSV+I+L FTL+AATTR GLL PL+DRFGIP+RL FY E+L IV Sbjct: 137 LDLIIGEGPAARSVRIDLPPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPEELCKIVA 196 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA--HAKTITREIADAALL 251 RGA+ A+T A EIA RSRGTPRIAGRLLRRVRDFA V + E+ADAAL Sbjct: 197 RGAEKLDFALTQGGAMEIARRSRGTPRIAGRLLRRVRDFASVTVPVGVPVETEVADAALK 256 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 RL +D +G D +D RYL IA GGPVG+ET++A L+E RD +ED+IEPY+IQ+G + Sbjct: 257 RLEVDALGLDAMDRRYLRRIAEYHHGGPVGVETLAAALAESRDTLEDVIEPYLIQEGLVL 316 Query: 312 RTPRGRLLMPIAWQHLGIDIP 332 RT RGR+L W+HLG+ P Sbjct: 317 RTTRGRVLGERGWRHLGLTPP 337 >gi|157962183|ref|YP_001502217.1| Holliday junction DNA helicase RuvB [Shewanella pealeana ATCC 700345] gi|189046050|sp|A8H545|RUVB_SHEPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157847183|gb|ABV87682.1| Holliday junction DNA helicase RuvB [Shewanella pealeana ATCC 700345] Length = 337 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 200/335 (59%), Positives = 255/335 (76%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++ + L+ N+ + D A +RP+ L+E+TGQ + + LK+FI+AA+ R EALDH+ Sbjct: 1 MIEADRLIQPNIIERDEIEAVDRAMRPKMLDEYTGQDDTRAQLKIFIQAAQKRGEALDHM 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRL Sbjct: 61 LIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+ RFGIP Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIP 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 +RL FY ++DL +IV R AK+ LA+ DE A EIA RSRGTPRIA RLLRRVRDFAEV H Sbjct: 181 LRLEFYNVKDLSSIVTRSAKVMDLAIDDEGAIEIARRSRGTPRIANRLLRRVRDFAEVKH 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 +T+ IA+ AL L +D GFD +D + L I F GGPVG++ ++A + E R+ IE Sbjct: 241 RGEVTKIIAEEALDMLDVDAEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 D++EP++IQQGFIQRTPRGR+ P A+ H I P Sbjct: 301 DVLEPFLIQQGFIQRTPRGRIATPRAYSHFNIIQP 335 >gi|258543668|ref|YP_003189101.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO 3283-01] gi|256634746|dbj|BAI00722.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO 3283-01] gi|256637802|dbj|BAI03771.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO 3283-03] gi|256640856|dbj|BAI06818.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO 3283-07] gi|256643911|dbj|BAI09866.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO 3283-22] gi|256646966|dbj|BAI12914.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO 3283-26] gi|256650019|dbj|BAI15960.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO 3283-32] gi|256653009|dbj|BAI18943.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656063|dbj|BAI21990.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO 3283-12] Length = 358 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 206/321 (64%), Positives = 247/321 (76%), Gaps = 2/321 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +ED S LRP+TL +FTGQ + NL +FI+AAK R +ALDHVL GPPGLGKTTLAQ+ Sbjct: 17 EEDVGESTLRPQTLHDFTGQKASRENLSIFIKAAKQRGDALDHVLLHGPPGLGKTTLAQI 76 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL +EEILYPAMEDFQ Sbjct: 77 VARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEILYPAMEDFQ 136 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LDL++GEGP+ARSV+I+L FTL+AATTR GLL PL+DRFGIP+RL FY E+L IV Sbjct: 137 LDLIIGEGPAARSVRIDLPPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPEELCKIVA 196 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA--HAKTITREIADAALL 251 RGA+ A+T A EIA RSRGTPRIAGRLLRRVRDFA V + E+ADAAL Sbjct: 197 RGAEKLDFALTLGGAMEIARRSRGTPRIAGRLLRRVRDFASVTVPAGVPVEAEVADAALK 256 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 RL +D +G D +D RYL IA GGPVG+ET++A L+E RD +ED+IEPY+IQ+G + Sbjct: 257 RLEVDALGLDAMDRRYLRRIAEYHHGGPVGVETLAAALAESRDTLEDVIEPYLIQEGLVL 316 Query: 312 RTPRGRLLMPIAWQHLGIDIP 332 RT RGR+L W+HLG+ P Sbjct: 317 RTTRGRVLGERGWRHLGLTPP 337 >gi|95931134|ref|ZP_01313859.1| Holliday junction DNA helicase RuvB [Desulfuromonas acetoxidans DSM 684] gi|95132824|gb|EAT14498.1| Holliday junction DNA helicase RuvB [Desulfuromonas acetoxidans DSM 684] Length = 341 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/327 (59%), Positives = 256/327 (78%), Gaps = 2/327 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+S +S ED + LRPRTL E+ GQ +A NL+VFI+AA R+EALDHVLF Sbjct: 1 MTDR--LISAELSDEDNIDNPLRPRTLNEYIGQEKAKENLEVFIQAALNRSEALDHVLFY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+GV+ +STSGPVI KAGDLAA+LTNLE+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLANIIASEMGVSIKSTSGPVIEKAGDLAAILTNLEEGDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMED+Q+D+M+G+GPSAR++K+++ RFTL+ ATTR GLL++PL+DRFG+ RL Sbjct: 119 VEEILYPAMEDYQIDIMIGQGPSARTIKLDIPRFTLVGATTRAGLLSSPLRDRFGVICRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY L IV+R A + G+ + ++ A EIA RSRGTPRIA RLLRRVRDFA+V + + Sbjct: 179 QFYTHAQLAVIVKRSASILGVPIDEKGALEIARRSRGTPRIANRLLRRVRDFAQVQNDGS 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +IAD AL RL +DK+GFD +D L I F GGPVG++T++A + E +D IE++I Sbjct: 239 INCDIADTALTRLEVDKIGFDHMDCLMLQTIMDKFSGGPVGLDTLAAAIGEEKDTIEEVI 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EP+++QQG+I RTPRGR++ +A++H Sbjct: 299 EPFLLQQGYINRTPRGRMVTELAYRHF 325 >gi|254374303|ref|ZP_04989785.1| holliday junction DNA helicase RuvB [Francisella novicida GA99-3548] gi|151572023|gb|EDN37677.1| holliday junction DNA helicase RuvB [Francisella novicida GA99-3548] Length = 348 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/335 (58%), Positives = 252/335 (75%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++ + ++S N +Q + + + +RP+TL E+ GQ +++FI+AAKAR +ALDH Sbjct: 1 MIETDRIISANTTQTNDENVIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTL+ ++A E+GV + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL Sbjct: 61 LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTL+ ATTR GLLT+PL+DRFGI Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL FY I+DL IV R AKL L +T + A EIA RSRGTPRIA RLLRRVRD+A+V Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAIEIAKRSRGTPRIANRLLRRVRDYAQVKG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 + I EIAD AL L +D +GFD +D RYL + F GGPVG++T+SA LSE + IE Sbjct: 241 SGVICFEIADKALSMLKVDPIGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 D+IEPY+IQQG+I RT RGR+ +A+ H + IP Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIP 335 >gi|146312075|ref|YP_001177149.1| Holliday junction DNA helicase RuvB [Enterobacter sp. 638] gi|167012671|sp|A4WBL8|RUVB_ENT38 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|145318951|gb|ABP61098.1| Holliday junction DNA helicase subunit RuvB [Enterobacter sp. 638] Length = 336 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 200/334 (59%), Positives = 253/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S +Q ED +RP+ LEE+ GQ + S +++FI+AAK R EALDH+L Sbjct: 1 MIEADRLISAASNQPEDVVDRAIRPKLLEEYIGQPQVRSQMEIFIQAAKLRGEALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQYIVGRSARFMGLELSDEGAFEVAKRSRGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ ++A AL L +D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 TISLDVAAQALDMLNVDAEGFDYMDRKLLLAILDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334 >gi|148261886|ref|YP_001236013.1| Holliday junction DNA helicase B [Acidiphilium cryptum JF-5] gi|326405390|ref|YP_004285472.1| Holliday junction ATP-dependent DNA helicase RuvB [Acidiphilium multivorum AIU301] gi|146403567|gb|ABQ32094.1| Holliday junction DNA helicase RuvB [Acidiphilium cryptum JF-5] gi|325052252|dbj|BAJ82590.1| Holliday junction ATP-dependent DNA helicase RuvB [Acidiphilium multivorum AIU301] Length = 347 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 209/326 (64%), Positives = 250/326 (76%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 LLS ED + LRP+TL EFTGQ + NL +FI AA+ R E+LDHVL GPPGLG Sbjct: 9 LLSGARDAEDGPEAALRPQTLAEFTGQKASRENLAIFIAAARGRGESLDHVLLHGPPGLG 68 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ++ARE+GV FR+TSGP+I K+GDLAA+LTNL+ RDVLFIDEIHRL +EE+LY Sbjct: 69 KTTLAQIIAREMGVGFRATSGPIIQKSGDLAAILTNLQPRDVLFIDEIHRLQPSIEEVLY 128 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDF LDL++GEGP ARSV+I+L RFTLI ATTR GLL NPL+DRFGIP+RL FY E Sbjct: 129 PAMEDFVLDLIIGEGPGARSVRIDLPRFTLIGATTRSGLLANPLRDRFGIPLRLVFYTPE 188 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L IV R A L + +T + A EIA RSRGTPRIAGRL RRVRDFA VA + R A Sbjct: 189 ELTLIVTRAATLLEMDITADGAAEIARRSRGTPRIAGRLTRRVRDFAAVAGTARVDRAAA 248 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 DAAL RL +D+ G D +D RYL IA + GGPVGIET++A LSEPRD +ED+IEP++IQ Sbjct: 249 DAALTRLDVDQRGLDAMDRRYLRRIAEHHNGGPVGIETLAAALSEPRDTLEDVIEPFLIQ 308 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332 +GF+ RTPRGR+L AW HLG+ P Sbjct: 309 EGFVIRTPRGRMLGREAWAHLGLLPP 334 >gi|56708102|ref|YP_169998.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp. tularensis SCHU S4] gi|89256412|ref|YP_513774.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp. holarctica LVS] gi|110670573|ref|YP_667130.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp. tularensis FSC198] gi|115314854|ref|YP_763577.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp. holarctica OSU18] gi|118497483|ref|YP_898533.1| Holliday junction DNA helicase B [Francisella tularensis subsp. novicida U112] gi|134301913|ref|YP_001121882.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp. tularensis WY96-3418] gi|156502503|ref|YP_001428568.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010434|ref|ZP_02275365.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp. holarctica FSC200] gi|195536176|ref|ZP_03079183.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp. novicida FTE] gi|254367748|ref|ZP_04983769.1| holliday junction DNA helicase subunit B [Francisella tularensis subsp. holarctica 257] gi|254369382|ref|ZP_04985394.1| holliday junction DNA helicase [Francisella tularensis subsp. holarctica FSC022] gi|254370586|ref|ZP_04986591.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254372835|ref|ZP_04988324.1| crossover junction endodeoxyribonuclease [Francisella tularensis subsp. novicida GA99-3549] gi|290953835|ref|ZP_06558456.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp. holarctica URFT1] gi|295312846|ref|ZP_06803578.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp. holarctica URFT1] gi|81820774|sp|Q5NG44|RUVB_FRATT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|122325131|sp|Q0BLU4|RUVB_FRATO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|123094512|sp|Q2A3C8|RUVB_FRATH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|123359475|sp|Q14HJ6|RUVB_FRAT1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231493|sp|A7NCA9|RUVB_FRATF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231494|sp|A0Q6B4|RUVB_FRATN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231495|sp|A4IXW0|RUVB_FRATW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|54114219|gb|AAV29743.1| NT02FT0210 [synthetic construct] gi|56604594|emb|CAG45646.1| holliday junction DNA helicase, subunit B [Francisella tularensis subsp. tularensis SCHU S4] gi|89144243|emb|CAJ79516.1| holliday junction DNA helicase, subunit B [Francisella tularensis subsp. holarctica LVS] gi|110320906|emb|CAL09029.1| holliday junction DNA helicase, subunit B [Francisella tularensis subsp. tularensis FSC198] gi|115129753|gb|ABI82940.1| crossover junction endodeoxyribonuclease [Francisella tularensis subsp. holarctica OSU18] gi|118423389|gb|ABK89779.1| holliday junction DNA helicase, subunit B [Francisella novicida U112] gi|134049690|gb|ABO46761.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp. tularensis WY96-3418] gi|134253559|gb|EBA52653.1| holliday junction DNA helicase subunit B [Francisella tularensis subsp. holarctica 257] gi|151568829|gb|EDN34483.1| hypothetical protein FTBG_00373 [Francisella tularensis subsp. tularensis FSC033] gi|151570562|gb|EDN36216.1| crossover junction endodeoxyribonuclease [Francisella novicida GA99-3549] gi|156253106|gb|ABU61612.1| holliday junction DNA helicase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122332|gb|EDO66472.1| holliday junction DNA helicase [Francisella tularensis subsp. holarctica FSC022] gi|194372653|gb|EDX27364.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp. novicida FTE] gi|282159302|gb|ADA78693.1| Holliday junction DNA helicase B [Francisella tularensis subsp. tularensis NE061598] Length = 348 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/335 (58%), Positives = 252/335 (75%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++ + ++S N +Q + + + +RP+TL E+ GQ +++FI+AAKAR +ALDH Sbjct: 1 MIETDRIISANTAQTNDENVIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTL+ ++A E+GV + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL Sbjct: 61 LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTL+ ATTR GLLT+PL+DRFGI Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL FY I+DL IV R AKL L +T + A EIA RSRGTPRIA RLLRRVRD+A+V Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAMEIAKRSRGTPRIANRLLRRVRDYAQVKG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 + I EIAD AL L +D +GFD +D RYL + F GGPVG++T+SA LSE + IE Sbjct: 241 SGVICFEIADKALSMLKVDPVGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 D+IEPY+IQQG+I RT RGR+ +A+ H + IP Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIP 335 >gi|225075205|ref|ZP_03718404.1| hypothetical protein NEIFLAOT_00205 [Neisseria flavescens NRL30031/H210] gi|224953380|gb|EEG34589.1| hypothetical protein NEIFLAOT_00205 [Neisseria flavescens NRL30031/H210] Length = 343 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/324 (61%), Positives = 248/324 (76%), Gaps = 1/324 (0%) Query: 9 SRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 ++N+S QE+ LRP+TL+++ GQ +A L +FI+AAK R EALDH L GPPGLGK Sbjct: 18 AQNISAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGK 77 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYP Sbjct: 78 TTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYP 137 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 A+ED+QLD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY+ +D Sbjct: 138 ALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYQNKD 197 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV R A+L L + DE A E+A RSRGTPRIA RLLRRVRD+A+V + I EIAD Sbjct: 198 LATIVARSAQLLQLDMGDEGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVIDAEIAD 257 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AAL L +D G D +D ++L I F GGPVG+E ++A + E D IED+IEPY+IQQ Sbjct: 258 AALSMLDVDVQGLDVMDRKFLEAILHKFSGGPVGLENVAAAIGESTDTIEDVIEPYLIQQ 317 Query: 308 GFIQRTPRGRLLMPIAWQHLGIDI 331 GF+QRTPRGR+ A+ H G+ + Sbjct: 318 GFLQRTPRGRVATERAYLHFGLKV 341 >gi|208779281|ref|ZP_03246627.1| holliday junction DNA helicase RuvB [Francisella novicida FTG] gi|208745081|gb|EDZ91379.1| holliday junction DNA helicase RuvB [Francisella novicida FTG] gi|332678175|gb|AEE87304.1| Holliday junction DNA helicase RuvB [Francisella cf. novicida Fx1] Length = 348 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/335 (58%), Positives = 252/335 (75%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++ + ++S N +Q + + + +RP+TL E+ GQ +++FI+AAKAR +ALDH Sbjct: 1 MIETDRIISANTTQTNDENVIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTL+ ++A E+GV + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL Sbjct: 61 LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTL+ ATTR GLLT+PL+DRFGI Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL FY I+DL IV R AKL L +T + A EIA RSRGTPRIA RLLRRVRD+A+V Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAMEIAKRSRGTPRIANRLLRRVRDYAQVKG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 + I EIAD AL L +D +GFD +D RYL + F GGPVG++T+SA LSE + IE Sbjct: 241 SGVICFEIADKALSMLKVDPVGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 D+IEPY+IQQG+I RT RGR+ +A+ H + IP Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIP 335 >gi|328676067|gb|AEB28742.1| Holliday junction DNA helicase RuvB [Francisella cf. novicida 3523] Length = 348 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/335 (59%), Positives = 251/335 (74%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVSQ---EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++ + ++S N +Q E+ +RP+TL E+ GQ +++FI+AAKAR +ALDH Sbjct: 1 MIETDRIISANTAQTSDENVIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTL+ ++A E+GV + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL Sbjct: 61 LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTL+ ATTR GLLT+PL+DRFGI Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL FY I+DL IV R AKL L +T + A EIA RSRGTPRIA RLLRRVRD+A+V Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAMEIAKRSRGTPRIANRLLRRVRDYAQVKG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 + I EIAD AL L +D +GFD +D RYL + F GGPVG++T+SA LSE + IE Sbjct: 241 SGVICFEIADKALSMLKVDPVGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 D+IEPY+IQQG+I RT RGR+ +A+ H + IP Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIP 335 >gi|284799750|ref|ZP_05984763.2| holliday junction DNA helicase RuvB [Neisseria subflava NJ9703] gi|284797037|gb|EFC52384.1| holliday junction DNA helicase RuvB [Neisseria subflava NJ9703] Length = 351 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/324 (61%), Positives = 248/324 (76%), Gaps = 1/324 (0%) Query: 9 SRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 ++N+S QE+ LRP+TL+++ GQ +A L +FI+AAK R EALDH L GPPGLGK Sbjct: 26 AQNISAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGK 85 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYP Sbjct: 86 TTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYP 145 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 A+ED+QLD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY+ +D Sbjct: 146 ALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYQNKD 205 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV R A+L L + DE A E+A RSRGTPRIA RLLRRVRD+A+V + I EIAD Sbjct: 206 LATIVARSAQLLQLDMGDEGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVIDAEIAD 265 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AAL L +D G D +D ++L I F GGPVG+E ++A + E D IED+IEPY+IQQ Sbjct: 266 AALSMLDVDGQGLDVMDRKFLEAILHKFSGGPVGLENVAAAIGESTDTIEDVIEPYLIQQ 325 Query: 308 GFIQRTPRGRLLMPIAWQHLGIDI 331 GF+QRTPRGR+ A+ H G+ + Sbjct: 326 GFLQRTPRGRVATERAYLHFGLKV 349 >gi|325128351|gb|EGC51235.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis N1568] Length = 343 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/319 (62%), Positives = 246/319 (77%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+ LRP+TL+++ GQ +A L +FI+AAK R EALDHVL GPPGLGKTTLA Sbjct: 23 AQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNL+ DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+M+GEGP+ARSVKINL FTLI ATTR G+LTNPL+DRFGI RL FYE DL TIV Sbjct: 143 RLDIMIGEGPAARSVKINLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L +++E A EIA RSRGTPRIA RLLRRVRDFA+V + TI IADAAL Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L + FGGGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ A+ H G+ + Sbjct: 323 TPRGRMATERAYLHFGLPV 341 >gi|114570972|ref|YP_757652.1| Holliday junction DNA helicase RuvB [Maricaulis maris MCS10] gi|122315335|sp|Q0ALX9|RUVB_MARMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|114341434|gb|ABI66714.1| Holliday junction DNA helicase RuvB [Maricaulis maris MCS10] Length = 352 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 208/329 (63%), Positives = 253/329 (76%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E L+ R++ D LRP + +F GQ A +NLKVF++AA+ R EALDHVL GPPG Sbjct: 11 ERLVDRDMQPGDGRDRALRPLSFSDFVGQKAAIANLKVFVDAARRREEALDHVLLSGPPG 70 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLAQ+VARE+GV FR+TSGPVIAKAGDLAA+LTNLE RDVLFIDEIHRL+ VEEI Sbjct: 71 LGKTTLAQIVAREMGVGFRATSGPVIAKAGDLAAILTNLEPRDVLFIDEIHRLAPAVEEI 130 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF LDL++GEGPSAR+V+I L FTL+ ATTR GLL PL+DRFG+P+RL FY+ Sbjct: 131 LYPAMEDFCLDLVIGEGPSARTVRIELPPFTLVGATTRAGLLATPLRDRFGVPVRLEFYD 190 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +L IV R A G+ T + A EIA R+RGTPR+AGRLLRRVRDFAE A I+ Sbjct: 191 EAELGFIVTRAADKLGIGATPDGAREIARRARGTPRVAGRLLRRVRDFAEAEDADHISEA 250 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +AD AL RL +D +G D LD RYL + +FGGGPVG+ET++A L+E RDA+ED++EP++ Sbjct: 251 VADRALKRLEVDAIGLDSLDRRYLRALTESFGGGPVGVETLAAALAEARDALEDVVEPFL 310 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 IQQGFIQRTPRGRL AW+HLG+ P Sbjct: 311 IQQGFIQRTPRGRLATGRAWEHLGLVPPQ 339 >gi|187931663|ref|YP_001891647.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp. mediasiatica FSC147] gi|238691563|sp|B2SGL0|RUVB_FRATM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|187712572|gb|ACD30869.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp. mediasiatica FSC147] Length = 348 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/335 (58%), Positives = 250/335 (74%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVSQ---EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++ + ++S N +Q E+ +RP+TL E+ GQ +++FI+AAKAR +ALDH Sbjct: 1 MIETDRIISANTAQTNDENVIDKAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTL+ ++A E+GV + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL Sbjct: 61 LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTL+ ATTR GLLT+PL+DRFGI Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL FY I+DL IV R AKL L +T + A EIA RSRGTPRIA RLLRRVRD+A+V Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAMEIAKRSRGTPRIANRLLRRVRDYAQVKG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 + I EI D AL L +D +GFD +D RYL + F GGPVG++T+SA LSE + IE Sbjct: 241 SGVICFEIVDKALSMLKVDPVGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 D+IEPY+IQQG+I RT RGR+ +A+ H + IP Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIP 335 >gi|329848092|ref|ZP_08263120.1| holliday junction DNA helicase RuvB [Asticcacaulis biprosthecum C19] gi|328843155|gb|EGF92724.1| holliday junction DNA helicase RuvB [Asticcacaulis biprosthecum C19] Length = 344 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/324 (61%), Positives = 248/324 (76%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S N +E A LRP+T ++F GQ +NLKVF++AA R EALDHVLF GPPGLGKT Sbjct: 9 SDNDYEEKAQDRALRPQTFDDFVGQAPLKANLKVFVDAAAQRREALDHVLFYGPPGLGKT 68 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLAQ+VARELGV FR+TSGPV+AKAGDLAA+L+NLE DVLFIDEIHRLS VEEILYPA Sbjct: 69 TLAQIVARELGVGFRATSGPVLAKAGDLAAILSNLEPNDVLFIDEIHRLSPAVEEILYPA 128 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED+ LDL++G+GP+AR+V+I+L+ FTL+ ATTR GLL+ PL+DRFGIP+RL FY E+L Sbjct: 129 MEDYVLDLIIGDGPAARTVRIDLAPFTLVGATTRAGLLSTPLRDRFGIPLRLEFYTPEEL 188 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 +V + G ++++ A EIA RSRGTPR+AGRLLRRVRDFA I ++ A Sbjct: 189 VRVVMGTGRKMGAPLSEDGALEIASRSRGTPRVAGRLLRRVRDFATSDGVALIDKKAASK 248 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL RL +D +G D D RYL + N+GGGPVG+ET+SA ++E RDA+ED+IEPY++QQG Sbjct: 249 ALARLEVDPVGLDHSDRRYLKALIENYGGGPVGLETLSAAIAEARDAVEDMIEPYLLQQG 308 Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332 FIQRT RGR+ A+ HLG+ P Sbjct: 309 FIQRTQRGRMACARAYLHLGLTPP 332 >gi|241758900|ref|ZP_04757013.1| holliday junction DNA helicase RuvB [Neisseria flavescens SK114] gi|241321108|gb|EER57321.1| holliday junction DNA helicase RuvB [Neisseria flavescens SK114] Length = 343 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/324 (61%), Positives = 248/324 (76%), Gaps = 1/324 (0%) Query: 9 SRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 ++N+S QE+ LRP+TL+++ GQ +A L +FI+AAK R EALDH L GPPGLGK Sbjct: 18 AQNISAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGK 77 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYP Sbjct: 78 TTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYP 137 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 A+ED+QLD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY+ +D Sbjct: 138 ALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYQNKD 197 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV R A+L L + DE A E+A RSRGTPRIA RLLRRVRD+A+V + I EIA+ Sbjct: 198 LATIVARSAQLLQLDMGDEGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVIDAEIAN 257 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AAL L +D G D +D ++L I F GGPVG+E ++A + E D IED+IEPY+IQQ Sbjct: 258 AALSMLDVDGQGLDVMDRKFLEAILHKFSGGPVGLENVAAAIGESTDTIEDVIEPYLIQQ 317 Query: 308 GFIQRTPRGRLLMPIAWQHLGIDI 331 GF+QRTPRGR+ A+ H G+ + Sbjct: 318 GFLQRTPRGRVATERAYLHFGLKV 341 >gi|113970240|ref|YP_734033.1| Holliday junction DNA helicase RuvB [Shewanella sp. MR-4] gi|123029677|sp|Q0HIZ1|RUVB_SHESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|113884924|gb|ABI38976.1| Holliday junction DNA helicase RuvB [Shewanella sp. MR-4] Length = 334 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/320 (61%), Positives = 248/320 (77%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 Q+D +RP+ L+E+TGQ + + LKVFI+AAK R EALDH+L GPPGLGKTTLA + Sbjct: 15 QDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLIYGPPGLGKTTLAMI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GVN +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+Q Sbjct: 75 VANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSPVVEEILYPAMEDYQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+ RFGIP+RL FY ++DL TIV Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNVKDLSTIVT 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A++ GLA+ E A EIA RSRGTPRIA RLLRRVRD+AEV H +T+++A+ AL L Sbjct: 195 RSAQVMGLAIDSEGATEIAKRSRGTPRIANRLLRRVRDYAEVKHDGAVTKKVAEHALDLL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRT Sbjct: 255 DVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRT 314 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 PRGR+ A+ H G+ P Sbjct: 315 PRGRIATTRAYLHFGMIKPE 334 >gi|90022178|ref|YP_528005.1| Holliday junction DNA helicase RuvB [Saccharophagus degradans 2-40] gi|123395885|sp|Q21HN6|RUVB_SACD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|89951778|gb|ABD81793.1| Holliday junction DNA helicase RuvB [Saccharophagus degradans 2-40] Length = 344 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/333 (58%), Positives = 254/333 (76%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++++ ++ N + I +RP++L+E+ GQ +++FI AA+AR ++LDH L Sbjct: 1 MIEQDRIIDANAKSREEQIDRAVRPKSLKEYIGQPVVREQMEIFIGAAQARGDSLDHTLV 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+G + +STSGPV+ KAGDLAAL+TNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIAAEMGADLKSTSGPVLEKAGDLAALMTNLEPGDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMEDFQLD+M+GEGP+ARS+K+ L FTL+ ATTR GLLT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDFQLDIMIGEGPAARSIKLELPPFTLVGATTRAGLLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY IEDL IV+R A L G+A+ A E+A RSRGTPRIA RLLRRVRD+AEV Sbjct: 181 LEFYNIEDLTHIVERSASLMGVAMDTPGAREVAKRSRGTPRIANRLLRRVRDYAEVKSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 T+T +IAD AL L +D+ GFD +D R L + FGGGPVG+++++A +SE RD IED+ Sbjct: 241 TVTAQIADLALNMLNVDEHGFDHMDRRLLLTLIEKFGGGPVGVDSLAAAISEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQGFI RTPRGR+ +A+QH G+++P Sbjct: 301 LEPYLIQQGFIMRTPRGRMATQLAYQHFGLNVP 333 >gi|117920402|ref|YP_869594.1| Holliday junction DNA helicase RuvB [Shewanella sp. ANA-3] gi|166231556|sp|A0KWL9|RUVB_SHESA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|117612734|gb|ABK48188.1| Holliday junction DNA helicase RuvB [Shewanella sp. ANA-3] Length = 334 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/320 (61%), Positives = 248/320 (77%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 Q+D +RP+ L+E+TGQ + + LKVFI+AAK R EALDH+L GPPGLGKTTLA + Sbjct: 15 QDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLIYGPPGLGKTTLAMI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GVN +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+Q Sbjct: 75 VANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSPVVEEILYPAMEDYQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+ RFGIP+RL FY ++DL TIV Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNVKDLSTIVT 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A++ GLA+ E A EIA RSRGTPRIA RLLRRVRD+AEV H +T+++A+ AL L Sbjct: 195 RSAQVMGLAIDSEGATEIAKRSRGTPRIANRLLRRVRDYAEVKHDGAVTQKVAEQALDLL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRT Sbjct: 255 DVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRT 314 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 PRGR+ A+ H G+ P Sbjct: 315 PRGRIATTRAYLHFGMIKPE 334 >gi|114047571|ref|YP_738121.1| Holliday junction DNA helicase RuvB [Shewanella sp. MR-7] gi|123326534|sp|Q0HUZ1|RUVB_SHESR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|113889013|gb|ABI43064.1| Holliday junction DNA helicase RuvB [Shewanella sp. MR-7] Length = 334 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/320 (61%), Positives = 248/320 (77%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 Q+D +RP+ L+E+TGQ + + LKVFI+AAK R EALDH+L GPPGLGKTTLA + Sbjct: 15 QDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLIYGPPGLGKTTLAMI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GVN +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+Q Sbjct: 75 VANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSPVVEEILYPAMEDYQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+ RFGIP+RL FY ++DL TIV Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNVKDLSTIVS 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A++ GLA+ E A EIA RSRGTPRIA RLLRRVRD+AEV H +T+++A+ AL L Sbjct: 195 RSAQVMGLAIDSEGAIEIAKRSRGTPRIANRLLRRVRDYAEVKHDGAVTKKVAEHALDLL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRT Sbjct: 255 DVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRT 314 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 PRGR+ A+ H G+ P Sbjct: 315 PRGRIATNRAYLHFGMIKPE 334 >gi|242239573|ref|YP_002987754.1| Holliday junction DNA helicase RuvB [Dickeya dadantii Ech703] gi|242131630|gb|ACS85932.1| Holliday junction DNA helicase RuvB [Dickeya dadantii Ech703] Length = 334 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/330 (58%), Positives = 255/330 (77%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S +V ++E+ +RP+TL E+ GQ + C +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRLISPSVIAEEEVQDRAIRPKTLAEYVGQPKVCEQMEIFIQAARKRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IVQR A+ GL +TDE A E+A RSRGTPRIA RLLRRVRDF+EV Sbjct: 181 LEFYQVADLQHIVQRSAQCLGLEMTDEGALEVARRSRGTPRIANRLLRRVRDFSEVKSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT E+A AL LA+D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 VITMEVAMQALDMLAVDAEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGF+QRTPRGR+ A++H G+ Sbjct: 301 LEPYLIQQGFLQRTPRGRIATQHAYRHFGL 330 >gi|319638400|ref|ZP_07993162.1| Holliday junction ATP-dependent DNA helicase ruvB [Neisseria mucosa C102] gi|317400149|gb|EFV80808.1| Holliday junction ATP-dependent DNA helicase ruvB [Neisseria mucosa C102] Length = 351 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/324 (61%), Positives = 248/324 (76%), Gaps = 1/324 (0%) Query: 9 SRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 ++N+S QE+ LRP+TL+++ GQ +A L +FI+AAK R EALDH L GPPGLGK Sbjct: 26 AQNISAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGK 85 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYP Sbjct: 86 TTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYP 145 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 A+ED+QLD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY+ +D Sbjct: 146 ALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYQNKD 205 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV R A+L L + +E A E+A RSRGTPRIA RLLRRVRD+A+V + I EIAD Sbjct: 206 LATIVARSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVIDAEIAD 265 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AAL L +D G D +D ++L I F GGPVG+E ++A + E D IED+IEPY+IQQ Sbjct: 266 AALSMLDVDGQGLDVMDRKFLEAILHKFSGGPVGLENVAAAIGESTDTIEDVIEPYLIQQ 325 Query: 308 GFIQRTPRGRLLMPIAWQHLGIDI 331 GF+QRTPRGR+ A+ H G+ + Sbjct: 326 GFLQRTPRGRVATERAYLHFGLKV 349 >gi|253997449|ref|YP_003049513.1| Holliday junction DNA helicase RuvB [Methylotenera mobilis JLW8] gi|253984128|gb|ACT48986.1| Holliday junction DNA helicase RuvB [Methylotenera mobilis JLW8] Length = 346 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/334 (58%), Positives = 255/334 (76%), Gaps = 2/334 (0%) Query: 1 MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M++ + L++ +V QEDA LRP+ L+E+ GQ +A + L++FI AA+ R+EALDHVL Sbjct: 1 MIETDRLIAPDVVSPQEDALERALRPKVLDEYIGQEKARAQLEIFINAARGRSEALDHVL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA ++A+E+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 LFGPPGLGKTTLAHIIAKEMGVNMRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLS 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEEILYPAMED++LD+M+GEGP+ARSV+++L FTL+ ATTR G+LTNPL+DRFGI Sbjct: 121 PVVEEILYPAMEDYRLDIMIGEGPAARSVRLDLPPFTLVGATTRAGMLTNPLRDRFGIVS 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL FY E+L IVQR A L + + D A EIA RSRGTPRIA RLLRRVRD+A+V Sbjct: 181 RLEFYTSEELGRIVQRSAGLLDVEMVDSGALEIARRSRGTPRIANRLLRRVRDYAQVKAD 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 + IADAAL L +DK+GFD +D + L + FGGGPVG++ ++A + E RD IED Sbjct: 241 GKVNANIADAALRMLDVDKLGFDVMDRKLLLAVLEKFGGGPVGLDNLAAAIGEERDTIED 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++EPY+IQQGF+ RTPRGR+ ++QH G+ +P Sbjct: 301 VLEPYLIQQGFLMRTPRGRVATSQSYQHFGLPVP 334 >gi|24373976|ref|NP_718019.1| Holliday junction DNA helicase B [Shewanella oneidensis MR-1] gi|29336676|sp|Q8EEF3|RUVB_SHEON RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|24348422|gb|AAN55463.1|AE015683_10 Holliday junction DNA helicase RuvB [Shewanella oneidensis MR-1] Length = 334 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/320 (61%), Positives = 247/320 (77%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 Q+D +RP+ L+E+TGQ + + LKVFI+AAK R EALDH+L GPPGLGKTTLA + Sbjct: 15 QDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLIYGPPGLGKTTLAMI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GVN +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+Q Sbjct: 75 VANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSPVVEEILYPAMEDYQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+ RFGIP+RL FY ++DL TIV Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNVKDLSTIVT 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A++ GLA+ E A EIA RSRGTPRIA RLLRRVRD+AEV H +T+ +A+ AL L Sbjct: 195 RSAQVMGLAIDSEGATEIAKRSRGTPRIANRLLRRVRDYAEVQHDGAVTQNVAELALNLL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRT Sbjct: 255 DVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRT 314 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 PRGR+ A+ H G+ P Sbjct: 315 PRGRIATARAYVHFGMIKPE 334 >gi|116748436|ref|YP_845123.1| Holliday junction DNA helicase RuvB [Syntrophobacter fumaroxidans MPOB] gi|166231563|sp|A0LGY6|RUVB_SYNFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116697500|gb|ABK16688.1| Holliday junction DNA helicase RuvB [Syntrophobacter fumaroxidans MPOB] Length = 339 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/310 (63%), Positives = 246/310 (79%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L+E+ GQ NL VFIEAA+ RAE LDHVLF G PGLGKT+LA V++ ELGVN Sbjct: 21 LRPRRLDEYVGQQTVKENLAVFIEAARQRAEPLDHVLFHGFPGLGKTSLATVISNELGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 RSTSGPVI +AGDLAA+LTNLE DVLFIDEIHRL+ +VEEILYPAMEDFQLD+++G+G Sbjct: 81 MRSTSGPVIERAGDLAAILTNLEQGDVLFIDEIHRLNHVVEEILYPAMEDFQLDIIIGQG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR++K++L FTL+ ATTR GLL+ PL+DRFG+ +RL FY++++LK IV R A++ G+ Sbjct: 141 PSARTIKLDLPPFTLVGATTRAGLLSPPLRDRFGVTLRLEFYKVDELKLIVTRSARILGI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V E A EIA RSRGTPRIA RLLRRVRD+AEV ITRE+AD AL L +D+ GFD Sbjct: 201 RVDAEGALEIAKRSRGTPRIANRLLRRVRDYAEVRADGRITREVADLALRMLDVDEKGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L+ I + GGPVGIET+SA +SE RD +ED+ EPY+IQ+GF+ +TPRGRL Sbjct: 261 GMDRKILSTIIEKYDGGPVGIETLSAAVSEERDTLEDVYEPYLIQEGFLNKTPRGRLATR 320 Query: 322 IAWQHLGIDI 331 +A++HLGI + Sbjct: 321 LAYEHLGISV 330 >gi|209965100|ref|YP_002298015.1| holliday junction DNA helicase RuvB [Rhodospirillum centenum SW] gi|226698782|sp|B6ITI4|RUVB_RHOCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|209958566|gb|ACI99202.1| holliday junction DNA helicase RuvB [Rhodospirillum centenum SW] Length = 362 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/317 (64%), Positives = 248/317 (78%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 DA + +RP +L EF GQ + NL VFI+AA+ R EALDHVL GPPGLGKTTLAQ+VA Sbjct: 19 DAAEASIRPLSLAEFIGQRQVRENLSVFIQAARGRKEALDHVLLFGPPGLGKTTLAQIVA 78 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 +EL V FR+TSGPVIAKAGDLAALLTNL+ DVLFIDEIHRLS VEEILYPAMEDFQLD Sbjct: 79 KELNVGFRATSGPVIAKAGDLAALLTNLQPHDVLFIDEIHRLSPAVEEILYPAMEDFQLD 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 L++GEGP+ARSV+I+L FTL+ ATTR GL+T PL++RFGIP+R+ FYE E+L+ IV RG Sbjct: 139 LIIGEGPAARSVRIDLPPFTLVGATTRSGLITRPLRERFGIPLRMQFYEPEELQLIVARG 198 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A++ G+ +T E A EIA RSRGTPR+AGRLLRRVRD VA + A AL RL + Sbjct: 199 ARILGMELTGEGALEIARRSRGTPRVAGRLLRRVRDICGVAGLAVVDAAAAGGALTRLEV 258 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D++GFD +D RYL IA N+GGGPVG+ET+ A L E RD +E+ IEPY+IQQG +QRTPR Sbjct: 259 DRLGFDAMDRRYLRCIADNYGGGPVGVETLGAALGEQRDVLEETIEPYLIQQGLLQRTPR 318 Query: 316 GRLLMPIAWQHLGIDIP 332 GRLL +++LG+ P Sbjct: 319 GRLLTDSGYRYLGLPPP 335 >gi|241668499|ref|ZP_04756077.1| Holliday junction DNA helicase RuvB [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877033|ref|ZP_05249743.1| holliday junction DNA helicase ruvB [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843054|gb|EET21468.1| holliday junction DNA helicase ruvB [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 348 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/335 (57%), Positives = 253/335 (75%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++ + ++S N Q + S+ +RP+TL E+ GQ +++FI+AAK+R +ALDH Sbjct: 1 MIETDRIISANTVQTKDENSIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKSRKDALDHT 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTL+ ++A E+ V + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL Sbjct: 61 LIFGPPGLGKTTLSNIIANEMEVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S ++EEILYPAMED+QLD+M+GEGP+ARS+KI+L FTL+ ATTR GLLT+PL+DRFGI Sbjct: 121 SPVIEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL FY ++DL IV R AKL L +TD+ A EIA RSRGTPRIA RLLRRVRD+A+V Sbjct: 181 QRLEFYSVDDLAKIVYRSAKLLDLDITDDGANEIAKRSRGTPRIANRLLRRVRDYAQVKA 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 + I+ +IAD AL L +D +GFD +D +YL + FGGGPVG++T++A LSE + IE Sbjct: 241 SGVISYDIADKALTMLKVDPVGFDHMDHKYLLTLMEKFGGGPVGLDTMAAALSEEKGTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 D+IEPY+IQQG+I RT RGR+ +A+ H + IP Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIP 335 >gi|304387495|ref|ZP_07369684.1| crossover junction ATP-dependent DNA helicase RuvB [Neisseria meningitidis ATCC 13091] gi|304338382|gb|EFM04503.1| crossover junction ATP-dependent DNA helicase RuvB [Neisseria meningitidis ATCC 13091] gi|308389336|gb|ADO31656.1| putative Holliday junction DNA helicase [Neisseria meningitidis alpha710] gi|325130310|gb|EGC53077.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis OX99.30304] gi|325136271|gb|EGC58879.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis M0579] Length = 343 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/319 (62%), Positives = 246/319 (77%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+ LRP+TL+++ GQ +A L +FI+AAK R EALDHVL GPPGLGKTTLA Sbjct: 23 AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNL+ DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+M+GEGP+ARSVKI+L FTLI ATTR G+LTNPL+DRFGI RL FYE DL TIV Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L +++E A EIA RSRGTPRIA RLLRRVRDFA+V + TI IADAAL Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L + FGGGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ A+ H G+ + Sbjct: 323 TPRGRMATERAYLHFGLPV 341 >gi|74318229|ref|YP_315969.1| Holliday junction DNA helicase RuvB [Thiobacillus denitrificans ATCC 25259] gi|97190415|sp|Q3SGT3|RUVB_THIDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|74057724|gb|AAZ98164.1| Holliday junction DNA helicase RuvB [Thiobacillus denitrificans ATCC 25259] Length = 341 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/319 (60%), Positives = 244/319 (76%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QE+ LRPRTL E+ GQ +A L++FI AA+ R+EALDHVL GPPGLGKTTLA + Sbjct: 16 QEEQIERALRPRTLAEYVGQAKAREQLEIFIHAARKRSEALDHVLLFGPPGLGKTTLAHI 75 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEE+LYPA+EDFQ Sbjct: 76 IAREMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPALEDFQ 135 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 136 IDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYSAEELGYIVH 195 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + + + A EIA RSRGTPRIA RLLRRVRD+AEV T +ADAAL+ L Sbjct: 196 RSAGLLQMNLDEAGALEIARRSRGTPRIANRLLRRVRDYAEVKAGGEATGAVADAALVML 255 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D+ G D +D + L + F GGPVG++ ++A + E RD IED++EPY+IQQG++QRT Sbjct: 256 DVDRAGLDVMDRKLLGAVVEKFMGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 315 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ P+A++HLGI P Sbjct: 316 PRGRVATPLAYRHLGIATP 334 >gi|15677115|ref|NP_274267.1| Holliday junction DNA helicase B [Neisseria meningitidis MC58] gi|121634936|ref|YP_975181.1| Holliday junction DNA helicase B [Neisseria meningitidis FAM18] gi|161870086|ref|YP_001599256.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis 053442] gi|254805023|ref|YP_003083244.1| holliday junction DNA helicase [Neisseria meningitidis alpha14] gi|20140280|sp|Q9JZ86|RUVB_NEIMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231505|sp|A1KU52|RUVB_NEIMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189046039|sp|A9LZC3|RUVB_NEIM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|7226483|gb|AAF41624.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis MC58] gi|120866642|emb|CAM10393.1| putative Holliday junction DNA helicase [Neisseria meningitidis FAM18] gi|161595639|gb|ABX73299.1| Holliday junction DNA helicase [Neisseria meningitidis 053442] gi|254668565|emb|CBA06048.1| holliday junction DNA helicase [Neisseria meningitidis alpha14] gi|325132573|gb|EGC55266.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis M6190] gi|325134509|gb|EGC57154.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis M13399] gi|325138346|gb|EGC60915.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis ES14902] gi|325140527|gb|EGC63048.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis CU385] gi|325142486|gb|EGC64890.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis 961-5945] gi|325144612|gb|EGC66911.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis M01-240013] gi|325198377|gb|ADY93833.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis G2136] gi|325202063|gb|ADY97517.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis M01-240149] gi|325205980|gb|ADZ01433.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis M04-240196] Length = 343 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/319 (62%), Positives = 246/319 (77%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+ LRP+TL+++ GQ +A L +FI+AAK R EALDHVL GPPGLGKTTLA Sbjct: 23 AQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNL+ DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+M+GEGP+ARSVKI+L FTLI ATTR G+LTNPL+DRFGI RL FYE DL TIV Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L +++E A EIA RSRGTPRIA RLLRRVRDFA+V + TI IADAAL Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L + FGGGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ A+ H G+ + Sbjct: 323 TPRGRMATERAYLHFGLPV 341 >gi|71909669|ref|YP_287256.1| Holliday junction DNA helicase B [Dechloromonas aromatica RCB] gi|97190011|sp|Q478E5|RUVB_DECAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|71849290|gb|AAZ48786.1| Holliday junction DNA helicase subunit RuvB [Dechloromonas aromatica RCB] Length = 358 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/320 (60%), Positives = 247/320 (77%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+A LRP+ L ++TGQV+ L++FI+AA+ R+E+LDHVL GPPGLGKTTLA Sbjct: 27 AQEEALERALRPKRLADYTGQVKIREQLEIFIQAARNRSESLDHVLLFGPPGLGKTTLAH 86 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VA E+GVN R TSGPV+ +AGDLAA+LTNLE DVLFIDEIHRLS +VEEILYPA+EDF Sbjct: 87 IVAAEMGVNLRQTSGPVLERAGDLAAILTNLEPHDVLFIDEIHRLSPVVEEILYPALEDF 146 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+LK+IV Sbjct: 147 QIDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELKSIV 206 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L + E + EIA RSRGTPRIA RLLRRVRD+AEV ITR++ADAAL Sbjct: 207 SRSASLLNAPIDPEGSFEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITRQVADAALHM 266 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D + L+ I FGGGPVG++ I+A + E RD IED++EPY+IQQG++QR Sbjct: 267 LDVDPAGLDIMDRKLLSAIIDKFGGGPVGVDNIAAAIGEARDTIEDVLEPYLIQQGYLQR 326 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 T RGR+ P ++HLG+ P Sbjct: 327 TLRGRIATPAIYRHLGLAEP 346 >gi|325204227|gb|ADY99680.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis M01-240355] Length = 343 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/319 (61%), Positives = 246/319 (77%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+ LRP+TL+++ GQ +A L +FI+AAK R EALDHVL GPPGLGKTTLA Sbjct: 23 AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNL+ DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FYE DL TIV Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L +++E A EIA RSRGTPRIA RLLRRVRDFA+V + TI IADAAL Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L + FGGGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ A+ H G+ + Sbjct: 323 TPRGRMATERAYLHFGLPV 341 >gi|120598877|ref|YP_963451.1| Holliday junction DNA helicase RuvB [Shewanella sp. W3-18-1] gi|166231557|sp|A1RJQ2|RUVB_SHESW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|120558970|gb|ABM24897.1| Holliday junction DNA helicase RuvB [Shewanella sp. W3-18-1] gi|319426433|gb|ADV54507.1| Holliday junction DNA helicase RuvB [Shewanella putrefaciens 200] Length = 334 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/320 (61%), Positives = 246/320 (76%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 Q+D +RP+ L+E+TGQ + + LKVFI+AAK R EALDH+L GPPGLGKTTLA + Sbjct: 15 QDDVVDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLIYGPPGLGKTTLAMI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GVN +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+Q Sbjct: 75 VANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSPVVEEILYPAMEDYQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+ RFGIP+RL FY I+DL TIV Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNIKDLSTIVT 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A++ GL + E A EIA RSRGTPRIA RLLRRVRD+AEV H IT+ +AD AL L Sbjct: 195 RSAQVMGLEIDTEGAFEIARRSRGTPRIANRLLRRVRDYAEVKHDGAITQFVADHALDLL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + + I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRT Sbjct: 255 DVDNEGFDYMDRKLMLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRT 314 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 PRGR+ A+QH + P Sbjct: 315 PRGRIATARAYQHFQLIKPE 334 >gi|313668358|ref|YP_004048642.1| Holliday junction DNA helicase [Neisseria lactamica ST-640] gi|309378614|emb|CBX22792.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313005820|emb|CBN87274.1| putative Holliday junction DNA helicase [Neisseria lactamica 020-06] Length = 343 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/319 (61%), Positives = 246/319 (77%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+ LRP+TL+++ GQ +A L +FI+AAK R EALDHVL GPPGLGKTTLA Sbjct: 23 AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNL+ DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FYE DL TIV Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLATIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L +++E A EIA RSRGTPRIA RLLRRVRDFA+V + TI IADAAL Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L + FGGGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ A+ H G+ + Sbjct: 323 TPRGRMATERAYLHFGLPV 341 >gi|304320108|ref|YP_003853751.1| Holliday junction DNA helicase RuvB [Parvularcula bermudensis HTCC2503] gi|303299011|gb|ADM08610.1| Holliday junction DNA helicase RuvB [Parvularcula bermudensis HTCC2503] Length = 340 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 202/328 (61%), Positives = 247/328 (75%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E L+ QED LRP L +F GQ + +NL +F+ AA+ R EA+DHVL GPPG Sbjct: 3 EARLTDPQPQEDDQDRALRPTRLADFQGQAQVKANLSIFVNAARQRGEAMDHVLLHGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA++VA ELGV FRSTSGPVI+KAGDLAA+LT L+ DVLFIDEIHRL+ VEEI Sbjct: 63 LGKTTLARIVAEELGVGFRSTSGPVISKAGDLAAILTGLDPHDVLFIDEIHRLTPTVEEI 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF+LD+++GEGPSARSV I+L FTLI ATTR GLL PL DRFGIP+RL FY Sbjct: 123 LYPAMEDFRLDILIGEGPSARSVTIDLPPFTLIGATTRSGLLAKPLLDRFGIPLRLQFYT 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 E+LK I+ RGA +T E A EIA RSRGTPR+AGRLLRRVRD A V IT E Sbjct: 183 EEELKGIILRGADRLSTPLTTEGAGEIARRSRGTPRVAGRLLRRVRDVATVEGTLPITEE 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A AL RL +D++G + LD RYL +I +FGGGPVG++T++A L+E RDA+ED+IEP++ Sbjct: 243 VATKALRRLDVDQLGLEMLDRRYLEIIVTHFGGGPVGVDTLAASLAEARDAVEDVIEPFL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +QQG IQRTPRGR + A++HLG+ P Sbjct: 303 LQQGLIQRTPRGRKVTDRAYRHLGLPPP 330 >gi|74311810|ref|YP_310229.1| Holliday junction DNA helicase RuvB [Shigella sonnei Ss046] gi|97190309|sp|Q3Z2L8|RUVB_SHISS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|73855287|gb|AAZ87994.1| Holliday junction helicase subunit A [Shigella sonnei Ss046] gi|323165017|gb|EFZ50807.1| holliday junction DNA helicase RuvB [Shigella sonnei 53G] Length = 336 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGTTLPEDGADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ +IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 >gi|281178930|dbj|BAI55260.1| holliday junction helicase subunit RuvB [Escherichia coli SE15] Length = 336 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ +IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 >gi|146293037|ref|YP_001183461.1| Holliday junction DNA helicase RuvB [Shewanella putrefaciens CN-32] gi|166231555|sp|A4Y6S9|RUVB_SHEPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|145564727|gb|ABP75662.1| Holliday junction DNA helicase RuvB [Shewanella putrefaciens CN-32] Length = 334 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/320 (61%), Positives = 246/320 (76%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 Q+D +RP+ L+E+TGQ + + LKVFI+AAK R EALDH+L GPPGLGKTTLA + Sbjct: 15 QDDVVDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLIYGPPGLGKTTLAMI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GVN +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+Q Sbjct: 75 VANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSPVVEEILYPAMEDYQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+ RFGIP+RL FY I+DL TIV Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNIKDLSTIVT 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A++ GL + E A EIA RSRGTPRIA RLLRRVRD+AEV H IT+ +AD AL L Sbjct: 195 RSAQVMGLEIDTEGAFEIARRSRGTPRIANRLLRRVRDYAEVKHDGAITQFVADHALDLL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + + I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRT Sbjct: 255 DVDNEGFDYMDRKLMLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRT 314 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 PRGR+ A+QH + P Sbjct: 315 PRGRIATARAYQHFQLIKPE 334 >gi|15802273|ref|NP_288297.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 EDL933] gi|15831824|ref|NP_310597.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. Sakai] gi|16129813|ref|NP_416374.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli str. K-12 substr. MG1655] gi|82543693|ref|YP_407640.1| Holliday junction DNA helicase RuvB [Shigella boydii Sb227] gi|82776446|ref|YP_402795.1| Holliday junction DNA helicase RuvB [Shigella dysenteriae Sd197] gi|89108700|ref|AP_002480.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli str. K-12 substr. W3110] gi|91211085|ref|YP_541071.1| Holliday junction DNA helicase RuvB [Escherichia coli UTI89] gi|117624012|ref|YP_852925.1| Holliday junction DNA helicase B [Escherichia coli APEC O1] gi|157154884|ref|YP_001463163.1| Holliday junction DNA helicase RuvB [Escherichia coli E24377A] gi|157161329|ref|YP_001458647.1| Holliday junction DNA helicase RuvB [Escherichia coli HS] gi|168747888|ref|ZP_02772910.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4113] gi|168757894|ref|ZP_02782901.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4401] gi|168762346|ref|ZP_02787353.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4501] gi|168770843|ref|ZP_02795850.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4486] gi|168783160|ref|ZP_02808167.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4076] gi|170019795|ref|YP_001724749.1| Holliday junction DNA helicase RuvB [Escherichia coli ATCC 8739] gi|170081516|ref|YP_001730836.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli str. K-12 substr. DH10B] gi|188495043|ref|ZP_03002313.1| Holliday junction DNA helicase RuvB [Escherichia coli 53638] gi|193066059|ref|ZP_03047116.1| Holliday junction DNA helicase RuvB [Escherichia coli E22] gi|193069915|ref|ZP_03050864.1| Holliday junction DNA helicase RuvB [Escherichia coli E110019] gi|194429647|ref|ZP_03062165.1| Holliday junction DNA helicase RuvB [Escherichia coli B171] gi|194433957|ref|ZP_03066229.1| Holliday junction DNA helicase RuvB [Shigella dysenteriae 1012] gi|194439048|ref|ZP_03071131.1| Holliday junction DNA helicase RuvB [Escherichia coli 101-1] gi|195940294|ref|ZP_03085676.1| Holliday junction DNA helicase B [Escherichia coli O157:H7 str. EC4024] gi|208810394|ref|ZP_03252270.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4206] gi|208816613|ref|ZP_03257733.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4045] gi|209399063|ref|YP_002270943.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4115] gi|209919227|ref|YP_002293311.1| Holliday junction DNA helicase RuvB [Escherichia coli SE11] gi|217328582|ref|ZP_03444663.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. TW14588] gi|218554448|ref|YP_002387361.1| Holliday junction DNA helicase RuvB [Escherichia coli IAI1] gi|218558725|ref|YP_002391638.1| Holliday junction DNA helicase RuvB [Escherichia coli S88] gi|218689798|ref|YP_002398010.1| Holliday junction DNA helicase RuvB [Escherichia coli ED1a] gi|218695426|ref|YP_002403093.1| Holliday junction DNA helicase RuvB [Escherichia coli 55989] gi|237705814|ref|ZP_04536295.1| holliday junction helicase subunit A [Escherichia sp. 3_2_53FAA] gi|238901075|ref|YP_002926871.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli BW2952] gi|253773183|ref|YP_003036014.1| Holliday junction DNA helicase RuvB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161920|ref|YP_003045028.1| Holliday junction DNA helicase RuvB [Escherichia coli B str. REL606] gi|254793484|ref|YP_003078321.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. TW14359] gi|256017936|ref|ZP_05431801.1| Holliday junction DNA helicase RuvB [Shigella sp. D9] gi|256022474|ref|ZP_05436339.1| Holliday junction DNA helicase RuvB [Escherichia sp. 4_1_40B] gi|260844204|ref|YP_003221982.1| ATP-dependent DNA helicase RuvB [Escherichia coli O103:H2 str. 12009] gi|260855800|ref|YP_003229691.1| ATP-dependent DNA helicase RuvB [Escherichia coli O26:H11 str. 11368] gi|260868395|ref|YP_003234797.1| ATP-dependent DNA helicase RuvB [Escherichia coli O111:H- str. 11128] gi|261227639|ref|ZP_05941920.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli O157:H7 str. FRIK2000] gi|261258195|ref|ZP_05950728.1| ATP-dependent DNA helicase RuvB [Escherichia coli O157:H7 str. FRIK966] gi|291283042|ref|YP_003499860.1| Holliday junction ATP-dependent DNA helicase ruvB [Escherichia coli O55:H7 str. CB9615] gi|293415175|ref|ZP_06657818.1| Holliday junction DNA helicase RuvB [Escherichia coli B185] gi|293446247|ref|ZP_06662669.1| Holliday junction DNA helicase RuvB [Escherichia coli B088] gi|300816248|ref|ZP_07096470.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 107-1] gi|300824198|ref|ZP_07104316.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 119-7] gi|300904744|ref|ZP_07122574.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 84-1] gi|300917563|ref|ZP_07134218.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 115-1] gi|300924949|ref|ZP_07140876.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 182-1] gi|300928891|ref|ZP_07144396.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 187-1] gi|300951482|ref|ZP_07165317.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 116-1] gi|300956627|ref|ZP_07168906.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 175-1] gi|301029310|ref|ZP_07192407.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 196-1] gi|301304449|ref|ZP_07210561.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 124-1] gi|301327649|ref|ZP_07220857.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 78-1] gi|301645624|ref|ZP_07245553.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 146-1] gi|306814310|ref|ZP_07448476.1| Holliday junction DNA helicase RuvB [Escherichia coli NC101] gi|307138523|ref|ZP_07497879.1| Holliday junction DNA helicase RuvB [Escherichia coli H736] gi|307314228|ref|ZP_07593838.1| Holliday junction DNA helicase RuvB [Escherichia coli W] gi|309789256|ref|ZP_07683849.1| holliday junction DNA helicase RuvB [Shigella dysenteriae 1617] gi|309794241|ref|ZP_07688665.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 145-7] gi|312969900|ref|ZP_07784083.1| holliday junction DNA helicase RuvB [Escherichia coli 1827-70] gi|331642474|ref|ZP_08343609.1| holliday junction DNA helicase RuvB [Escherichia coli H736] gi|331647457|ref|ZP_08348549.1| holliday junction DNA helicase RuvB [Escherichia coli M605] gi|331653269|ref|ZP_08354274.1| holliday junction DNA helicase RuvB [Escherichia coli M718] gi|331668554|ref|ZP_08369402.1| holliday junction DNA helicase RuvB [Escherichia coli TA271] gi|331677741|ref|ZP_08378416.1| holliday junction DNA helicase RuvB [Escherichia coli H591] gi|331683366|ref|ZP_08383967.1| holliday junction DNA helicase RuvB [Escherichia coli H299] gi|332278970|ref|ZP_08391383.1| holliday junction DNA helicase RuvB [Shigella sp. D9] gi|67472392|sp|P0A812|RUVB_ECOLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|67472393|sp|P0A813|RUVB_ECO57 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|97190295|sp|Q322E6|RUVB_SHIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|97190303|sp|Q32HA1|RUVB_SHIDS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|123266057|sp|Q1RAS4|RUVB_ECOUT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231490|sp|A1AC21|RUVB_ECOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|167012669|sp|A7ZMY4|RUVB_ECO24 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|167012670|sp|A8A160|RUVB_ECOHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189046031|sp|B1J0M8|RUVB_ECOLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226698775|sp|B5YR05|RUVB_ECO5E RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226698776|sp|B6IBT9|RUVB_ECOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226725457|sp|B7MBR9|RUVB_ECO45 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226725459|sp|B7M2F1|RUVB_ECO8A RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|229564227|sp|B1XHC8|RUVB_ECODH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767426|sp|B7L7R3|RUVB_ECO55 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767427|sp|B7MVZ1|RUVB_ECO81 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|259495664|sp|C4ZQE4|RUVB_ECOBW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|12515916|gb|AAG56850.1|AE005408_8 Holliday junction helicase subunit A; branch migration; repair [Escherichia coli O157:H7 str. EDL933] gi|42903|emb|CAA30120.1| unnamed protein product [Escherichia coli] gi|147783|gb|AAA24613.1| ruvB protein [Escherichia coli] gi|1736507|dbj|BAA15671.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli str. K12 substr. W3110] gi|1788167|gb|AAC74930.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli str. K-12 substr. MG1655] gi|13362038|dbj|BAB35993.1| Holliday junction helicase subunit A [Escherichia coli O157:H7 str. Sakai] gi|81240594|gb|ABB61304.1| Holliday junction helicase subunit A [Shigella dysenteriae Sd197] gi|81245104|gb|ABB65812.1| Holliday junction helicase subunit A [Shigella boydii Sb227] gi|91072659|gb|ABE07540.1| RuvB protein, Holliday junction helicase subunit A [Escherichia coli UTI89] gi|115513136|gb|ABJ01211.1| Holliday junction DNA helicase ruvB [Escherichia coli APEC O1] gi|157067009|gb|ABV06264.1| Holliday junction DNA helicase RuvB [Escherichia coli HS] gi|157076914|gb|ABV16622.1| Holliday junction DNA helicase RuvB [Escherichia coli E24377A] gi|169754723|gb|ACA77422.1| Holliday junction DNA helicase RuvB [Escherichia coli ATCC 8739] gi|169889351|gb|ACB03058.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli str. K-12 substr. DH10B] gi|188017493|gb|EDU55615.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4113] gi|188490242|gb|EDU65345.1| Holliday junction DNA helicase RuvB [Escherichia coli 53638] gi|188999428|gb|EDU68414.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4076] gi|189355195|gb|EDU73614.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4401] gi|189360310|gb|EDU78729.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4486] gi|189367355|gb|EDU85771.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4501] gi|192926296|gb|EDV80933.1| Holliday junction DNA helicase RuvB [Escherichia coli E22] gi|192956815|gb|EDV87269.1| Holliday junction DNA helicase RuvB [Escherichia coli E110019] gi|194412289|gb|EDX28593.1| Holliday junction DNA helicase RuvB [Escherichia coli B171] gi|194417829|gb|EDX33926.1| Holliday junction DNA helicase RuvB [Shigella dysenteriae 1012] gi|194422007|gb|EDX38011.1| Holliday junction DNA helicase RuvB [Escherichia coli 101-1] gi|195182922|dbj|BAG66490.1| Holliday junction helicase subunit A [Escherichia coli O111:H-] gi|208724910|gb|EDZ74617.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4206] gi|208730956|gb|EDZ79645.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4045] gi|209160463|gb|ACI37896.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC4115] gi|209767478|gb|ACI82051.1| Holliday junction helicase subunit A [Escherichia coli] gi|209767480|gb|ACI82052.1| Holliday junction helicase subunit A [Escherichia coli] gi|209767482|gb|ACI82053.1| Holliday junction helicase subunit A [Escherichia coli] gi|209767484|gb|ACI82054.1| Holliday junction helicase subunit A [Escherichia coli] gi|209767486|gb|ACI82055.1| Holliday junction helicase subunit A [Escherichia coli] gi|209912486|dbj|BAG77560.1| holliday junction helicase subunit RuvB [Escherichia coli SE11] gi|217317929|gb|EEC26356.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. TW14588] gi|218352158|emb|CAU97897.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli 55989] gi|218361216|emb|CAQ98800.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli IAI1] gi|218365494|emb|CAR03221.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli S88] gi|218427362|emb|CAR08257.2| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli ED1a] gi|222033609|emb|CAP76350.1| Holliday junction ATP-dependent DNA helicase ruvB [Escherichia coli LF82] gi|226900571|gb|EEH86830.1| holliday junction helicase subunit A [Escherichia sp. 3_2_53FAA] gi|238860043|gb|ACR62041.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli BW2952] gi|242377581|emb|CAQ32336.1| branch migration of Holliday structures; repair helicase, subunit of resolvasome [Escherichia coli BL21(DE3)] gi|253324227|gb|ACT28829.1| Holliday junction DNA helicase RuvB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973821|gb|ACT39492.1| Holliday junction DNA helicase B [Escherichia coli B str. REL606] gi|253978015|gb|ACT43685.1| Holliday junction DNA helicase B [Escherichia coli BL21(DE3)] gi|254592884|gb|ACT72245.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli O157:H7 str. TW14359] gi|257754449|dbj|BAI25951.1| ATP-dependent DNA helicase RuvB [Escherichia coli O26:H11 str. 11368] gi|257759351|dbj|BAI30848.1| ATP-dependent DNA helicase RuvB [Escherichia coli O103:H2 str. 12009] gi|257764751|dbj|BAI36246.1| ATP-dependent DNA helicase RuvB [Escherichia coli O111:H- str. 11128] gi|260449017|gb|ACX39439.1| Holliday junction DNA helicase RuvB [Escherichia coli DH1] gi|290762915|gb|ADD56876.1| Holliday junction ATP-dependent DNA helicase ruvB [Escherichia coli O55:H7 str. CB9615] gi|291323077|gb|EFE62505.1| Holliday junction DNA helicase RuvB [Escherichia coli B088] gi|291432823|gb|EFF05802.1| Holliday junction DNA helicase RuvB [Escherichia coli B185] gi|294494033|gb|ADE92789.1| Holliday junction DNA helicase RuvB [Escherichia coli IHE3034] gi|299877736|gb|EFI85947.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 196-1] gi|300316609|gb|EFJ66393.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 175-1] gi|300403328|gb|EFJ86866.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 84-1] gi|300415217|gb|EFJ98527.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 115-1] gi|300418885|gb|EFK02196.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 182-1] gi|300449232|gb|EFK12852.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 116-1] gi|300463119|gb|EFK26612.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 187-1] gi|300523269|gb|EFK44338.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 119-7] gi|300530938|gb|EFK52000.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 107-1] gi|300840300|gb|EFK68060.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 124-1] gi|300845797|gb|EFK73557.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 78-1] gi|301076156|gb|EFK90962.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 146-1] gi|305852469|gb|EFM52920.1| Holliday junction DNA helicase RuvB [Escherichia coli NC101] gi|306906197|gb|EFN36715.1| Holliday junction DNA helicase RuvB [Escherichia coli W] gi|307626657|gb|ADN70961.1| Holliday junction DNA helicase RuvB [Escherichia coli UM146] gi|308122146|gb|EFO59408.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 145-7] gi|308923010|gb|EFP68524.1| holliday junction DNA helicase RuvB [Shigella dysenteriae 1617] gi|309702084|emb|CBJ01398.1| holliday junction ATP-dependent DNA helicase [Escherichia coli ETEC H10407] gi|310338185|gb|EFQ03274.1| holliday junction DNA helicase RuvB [Escherichia coli 1827-70] gi|312946460|gb|ADR27287.1| Holliday junction DNA helicase RuvB [Escherichia coli O83:H1 str. NRG 857C] gi|315061166|gb|ADT75493.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli W] gi|315136503|dbj|BAJ43662.1| Holliday junction DNA resolvasome [Escherichia coli DH1] gi|315257308|gb|EFU37276.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 85-1] gi|315286571|gb|EFU46006.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 110-3] gi|320173572|gb|EFW48767.1| Holliday junction DNA helicase RuvB [Shigella dysenteriae CDC 74-1112] gi|320182602|gb|EFW57491.1| Holliday junction DNA helicase RuvB [Shigella boydii ATCC 9905] gi|320187794|gb|EFW62468.1| Holliday junction DNA helicase RuvB [Shigella flexneri CDC 796-83] gi|320188561|gb|EFW63223.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. EC1212] gi|320194424|gb|EFW69055.1| Holliday junction DNA helicase RuvB [Escherichia coli WV_060327] gi|320198054|gb|EFW72662.1| Holliday junction DNA helicase RuvB [Escherichia coli EC4100B] gi|320641714|gb|EFX11102.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. G5101] gi|320647074|gb|EFX15907.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H- str. 493-89] gi|320652357|gb|EFX20655.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H- str. H 2687] gi|320657958|gb|EFX25720.1| Holliday junction DNA helicase RuvB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658531|gb|EFX26225.1| Holliday junction DNA helicase RuvB [Escherichia coli O55:H7 str. USDA 5905] gi|320668429|gb|EFX35256.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. LSU-61] gi|323152651|gb|EFZ38927.1| holliday junction DNA helicase RuvB [Escherichia coli EPECa14] gi|323158655|gb|EFZ44669.1| holliday junction DNA helicase RuvB [Escherichia coli E128010] gi|323174752|gb|EFZ60368.1| holliday junction DNA helicase RuvB [Escherichia coli LT-68] gi|323180657|gb|EFZ66202.1| holliday junction DNA helicase RuvB [Escherichia coli 1180] gi|323186364|gb|EFZ71714.1| holliday junction DNA helicase RuvB [Escherichia coli 1357] gi|323186867|gb|EFZ72186.1| holliday junction DNA helicase RuvB [Escherichia coli RN587/1] gi|323378257|gb|ADX50525.1| Holliday junction DNA helicase RuvB [Escherichia coli KO11] gi|323937118|gb|EGB33398.1| Holliday junction DNA helicase RuvB [Escherichia coli E1520] gi|323940472|gb|EGB36663.1| Holliday junction DNA helicase RuvB [Escherichia coli E482] gi|323948254|gb|EGB44242.1| Holliday junction DNA helicase RuvB [Escherichia coli H120] gi|323952362|gb|EGB48235.1| Holliday junction DNA helicase RuvB [Escherichia coli H252] gi|323956491|gb|EGB52233.1| Holliday junction DNA helicase RuvB [Escherichia coli H263] gi|323961915|gb|EGB57514.1| Holliday junction DNA helicase RuvB [Escherichia coli H489] gi|323972632|gb|EGB67835.1| Holliday junction DNA helicase RuvB [Escherichia coli TA007] gi|324007233|gb|EGB76452.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 57-2] gi|324018003|gb|EGB87222.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 117-3] gi|324118920|gb|EGC12809.1| Holliday junction DNA helicase RuvB [Escherichia coli E1167] gi|326342240|gb|EGD66021.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. 1044] gi|326343790|gb|EGD67552.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str. 1125] gi|330911670|gb|EGH40180.1| holliday junction DNA helicase RuvB [Escherichia coli AA86] gi|331039272|gb|EGI11492.1| holliday junction DNA helicase RuvB [Escherichia coli H736] gi|331043181|gb|EGI15319.1| holliday junction DNA helicase RuvB [Escherichia coli M605] gi|331049367|gb|EGI21439.1| holliday junction DNA helicase RuvB [Escherichia coli M718] gi|331063748|gb|EGI35659.1| holliday junction DNA helicase RuvB [Escherichia coli TA271] gi|331074201|gb|EGI45521.1| holliday junction DNA helicase RuvB [Escherichia coli H591] gi|331079581|gb|EGI50778.1| holliday junction DNA helicase RuvB [Escherichia coli H299] gi|332090037|gb|EGI95137.1| holliday junction DNA helicase RuvB [Shigella boydii 5216-82] gi|332095252|gb|EGJ00279.1| holliday junction DNA helicase RuvB [Shigella dysenteriae 155-74] gi|332096697|gb|EGJ01688.1| holliday junction DNA helicase RuvB [Shigella boydii 3594-74] gi|332101322|gb|EGJ04668.1| holliday junction DNA helicase RuvB [Shigella sp. D9] gi|332343586|gb|AEE56920.1| holliday junction DNA helicase RuvB [Escherichia coli UMNK88] gi|333004713|gb|EGK24236.1| holliday junction DNA helicase RuvB [Shigella flexneri K-272] gi|333018433|gb|EGK37731.1| holliday junction DNA helicase RuvB [Shigella flexneri K-227] Length = 336 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ +IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 >gi|186477305|ref|YP_001858775.1| Holliday junction DNA helicase RuvB [Burkholderia phymatum STM815] gi|184193764|gb|ACC71729.1| Holliday junction DNA helicase RuvB [Burkholderia phymatum STM815] Length = 363 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/319 (61%), Positives = 243/319 (76%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRPR L+E+ GQ + L++FIEAAK R+E+LDHVL GPPGLGKTTLA + Sbjct: 30 NEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 89 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 90 IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 149 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 150 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVS 209 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L G + E A EIA RSRGTPRIA RLLRRVRD+AEV IT ++ADAAL L Sbjct: 210 RSASLLGAQIHPEGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAKVADAALKML 269 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT Sbjct: 270 DVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 329 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ + ++H G+ P Sbjct: 330 PRGRVATLLTYRHFGLAAP 348 >gi|331657909|ref|ZP_08358871.1| holliday junction DNA helicase RuvB [Escherichia coli TA206] gi|315296551|gb|EFU55848.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 16-3] gi|331056157|gb|EGI28166.1| holliday junction DNA helicase RuvB [Escherichia coli TA206] Length = 336 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ +IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 >gi|167627947|ref|YP_001678447.1| Holliday junction DNA helicase RuvB [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189046033|sp|B0U0B6|RUVB_FRAP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|167597948|gb|ABZ87946.1| Holliday junction DNA helicase, subunit B [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 348 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/335 (57%), Positives = 253/335 (75%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++ + ++S N Q + S+ +RP+TL E+ GQ +++FI+AAK+R +ALDH Sbjct: 1 MIETDRIISANTVQTKDENSIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKSRKDALDHT 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTL+ ++A E+ V + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL Sbjct: 61 LIFGPPGLGKTTLSNIIANEMEVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S ++EEILYPAMED+QLD+M+GEGP+ARS+KI+L FTL+ ATTR GLLT+PL+DRFGI Sbjct: 121 SPVIEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL FY ++DL IV R AKL L +TD+ A EIA RSRGTPRIA RLLRRVRD+A+V Sbjct: 181 QRLEFYSVDDLAKIVYRSAKLLDLDITDDGANEIAKRSRGTPRIANRLLRRVRDYAQVKA 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 + I+ +IAD AL L +D +GFD +D +YL + FGGGPVG++T++A LSE + IE Sbjct: 241 SGVISYDIADKALTMLKVDPVGFDHMDHKYLLTLMEKFGGGPVGLDTMAAALSEEKGTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 D+IEPY+IQQG++ RT RGR+ +A+ H + IP Sbjct: 301 DVIEPYLIQQGYLMRTARGRIATLLAYNHFKLKIP 335 >gi|237731898|ref|ZP_04562379.1| holliday junction DNA helicase ruvB [Citrobacter sp. 30_2] gi|226907437|gb|EEH93355.1| holliday junction DNA helicase ruvB [Citrobacter sp. 30_2] Length = 336 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/334 (58%), Positives = 253/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + + ED +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAVSTTPEDLVDRAIRPKLLEEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++DE A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVADLQHIVGRSARFMGLEMSDEGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ +IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPQ 334 >gi|218768245|ref|YP_002342757.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis Z2491] gi|20140277|sp|Q9JUB0|RUVB_NEIMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|121052253|emb|CAM08578.1| putative Holliday junction DNA helicase [Neisseria meningitidis Z2491] gi|254670095|emb|CBA05013.1| holliday junction DNA helicase [Neisseria meningitidis alpha153] gi|254673909|emb|CBA09693.1| holliday junction DNA helicase [Neisseria meningitidis alpha275] gi|261392495|emb|CAX50046.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis 8013] gi|316985102|gb|EFV64055.1| holliday junction DNA helicase RuvB [Neisseria meningitidis H44/76] gi|319410492|emb|CBY90853.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis WUE 2594] gi|325200126|gb|ADY95581.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis H44/76] gi|325208183|gb|ADZ03635.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis NZ-05/33] Length = 343 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/319 (61%), Positives = 246/319 (77%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+ LRP+TL+++ GQ +A L +FI+AAK R EALDHVL GPPGLGKTTLA Sbjct: 23 AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNL+ DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FYE DL TIV Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLATIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L +++E A EIA RSRGTPRIA RLLRRVRDFA+V + TI IADAAL Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L + FGGGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDVQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ A+ H G+ + Sbjct: 323 TPRGRMATERAYLHFGLPV 341 >gi|331673390|ref|ZP_08374158.1| holliday junction DNA helicase RuvB [Escherichia coli TA280] gi|331069588|gb|EGI40975.1| holliday junction DNA helicase RuvB [Escherichia coli TA280] Length = 336 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ +IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLTVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334 >gi|152970922|ref|YP_001336031.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895437|ref|YP_002920172.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae NTUH-K2044] gi|330001164|ref|ZP_08303910.1| Holliday junction DNA helicase RuvB [Klebsiella sp. MS 92-3] gi|166231498|sp|A6TB30|RUVB_KLEP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|150955771|gb|ABR77801.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547754|dbj|BAH64105.1| Holliday junction DNA helicase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537775|gb|EGF63975.1| Holliday junction DNA helicase RuvB [Klebsiella sp. MS 92-3] Length = 336 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/333 (59%), Positives = 253/333 (75%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + S E+A +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLVSADSSGFEEAADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY+I DL+ IV R A+ GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQIPDLQHIVSRSARHMGLEMSDEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ +IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 333 >gi|26248126|ref|NP_754166.1| Holliday junction DNA helicase RuvB [Escherichia coli CFT073] gi|110641978|ref|YP_669708.1| Holliday junction DNA helicase RuvB [Escherichia coli 536] gi|170681518|ref|YP_001743384.1| Holliday junction DNA helicase RuvB [Escherichia coli SMS-3-5] gi|191173034|ref|ZP_03034568.1| Holliday junction DNA helicase RuvB [Escherichia coli F11] gi|215487073|ref|YP_002329504.1| Holliday junction DNA helicase RuvB [Escherichia coli O127:H6 str. E2348/69] gi|218548579|ref|YP_002382370.1| Holliday junction DNA helicase RuvB [Escherichia fergusonii ATCC 35469] gi|218699568|ref|YP_002407197.1| Holliday junction DNA helicase RuvB [Escherichia coli IAI39] gi|218705361|ref|YP_002412880.1| Holliday junction DNA helicase RuvB [Escherichia coli UMN026] gi|227885712|ref|ZP_04003517.1| Holliday junction DNA helicase B [Escherichia coli 83972] gi|293405355|ref|ZP_06649347.1| ruvB [Escherichia coli FVEC1412] gi|293410172|ref|ZP_06653748.1| Holliday junction DNA helicase RuvB [Escherichia coli B354] gi|298380997|ref|ZP_06990596.1| Holliday junction DNA helicase RuvB [Escherichia coli FVEC1302] gi|300899110|ref|ZP_07117393.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 198-1] gi|300935835|ref|ZP_07150793.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 21-1] gi|300982164|ref|ZP_07175899.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 200-1] gi|300994111|ref|ZP_07180694.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 45-1] gi|301018304|ref|ZP_07182813.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 69-1] gi|312967062|ref|ZP_07781280.1| holliday junction DNA helicase RuvB [Escherichia coli 2362-75] gi|331663356|ref|ZP_08364266.1| holliday junction DNA helicase RuvB [Escherichia coli TA143] gi|29336705|sp|Q8FGR3|RUVB_ECOL6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|122958286|sp|Q0TGX2|RUVB_ECOL5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226725458|sp|B7NS58|RUVB_ECO7I RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226725460|sp|B7NBL1|RUVB_ECOLU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226725461|sp|B1LD11|RUVB_ECOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226725462|sp|B7LPI4|RUVB_ESCF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767425|sp|B7USN7|RUVB_ECO27 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|26108529|gb|AAN80731.1|AE016761_306 Holliday junction DNA helicase ruvB [Escherichia coli CFT073] gi|110343570|gb|ABG69807.1| holliday junction DNA helicase RuvB [Escherichia coli 536] gi|170519236|gb|ACB17414.1| Holliday junction DNA helicase RuvB [Escherichia coli SMS-3-5] gi|190906745|gb|EDV66350.1| Holliday junction DNA helicase RuvB [Escherichia coli F11] gi|215265145|emb|CAS09533.1| ATP-dependent DNA helicase RuvB, component of RuvABC resolvasome [Escherichia coli O127:H6 str. E2348/69] gi|218356120|emb|CAQ88737.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia fergusonii ATCC 35469] gi|218369554|emb|CAR17323.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli IAI39] gi|218432458|emb|CAR13351.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Escherichia coli UMN026] gi|227837285|gb|EEJ47751.1| Holliday junction DNA helicase B [Escherichia coli 83972] gi|284921780|emb|CBG34853.1| holliday junction ATP-dependent DNA helicase [Escherichia coli 042] gi|291427563|gb|EFF00590.1| ruvB [Escherichia coli FVEC1412] gi|291470640|gb|EFF13124.1| Holliday junction DNA helicase RuvB [Escherichia coli B354] gi|298278439|gb|EFI19953.1| Holliday junction DNA helicase RuvB [Escherichia coli FVEC1302] gi|300307320|gb|EFJ61840.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 200-1] gi|300357267|gb|EFJ73137.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 198-1] gi|300399740|gb|EFJ83278.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 69-1] gi|300406373|gb|EFJ89911.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 45-1] gi|300458947|gb|EFK22440.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 21-1] gi|307553879|gb|ADN46654.1| holliday junction ATP-dependent DNA helicase RuvB [Escherichia coli ABU 83972] gi|312288526|gb|EFR16428.1| holliday junction DNA helicase RuvB [Escherichia coli 2362-75] gi|315290339|gb|EFU49715.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 153-1] gi|323968280|gb|EGB63687.1| Holliday junction DNA helicase RuvB [Escherichia coli M863] gi|323977956|gb|EGB73042.1| Holliday junction DNA helicase RuvB [Escherichia coli TW10509] gi|324012871|gb|EGB82090.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 60-1] gi|324113596|gb|EGC07571.1| Holliday junction DNA helicase RuvB [Escherichia fergusonii B253] gi|325496997|gb|EGC94856.1| Holliday junction DNA helicase RuvB [Escherichia fergusonii ECD227] gi|327252986|gb|EGE64640.1| holliday junction DNA helicase RuvB [Escherichia coli STEC_7v] gi|331059155|gb|EGI31132.1| holliday junction DNA helicase RuvB [Escherichia coli TA143] Length = 336 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ +IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334 >gi|325267529|ref|ZP_08134182.1| crossover junction ATP-dependent DNA helicase RuvB [Kingella denitrificans ATCC 33394] gi|324981054|gb|EGC16713.1| crossover junction ATP-dependent DNA helicase RuvB [Kingella denitrificans ATCC 33394] Length = 347 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/317 (61%), Positives = 242/317 (76%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+ LRP+ L ++ GQ +A L +FI+AAK R EALDH L GPPGLGKTTLA Sbjct: 27 TQEEQLERALRPKFLADYIGQHKAKEQLDIFIQAAKHRGEALDHTLLFGPPGLGKTTLAH 86 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+ Sbjct: 87 IIARELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPAMEDY 146 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY+ +DL+TIV Sbjct: 147 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYQPQDLRTIV 206 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L + + ++ A E+A RSRGTPRIA RLLRRVRDFA+V A I +ADAAL Sbjct: 207 ARSAQLLDMNLNEQGAWEVACRSRGTPRIANRLLRRVRDFAQVKKAACIDAAVADAALSL 266 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +DK G D +D ++L + F GGPVG+E ++A + E D IED+IEPY+IQQG +QR Sbjct: 267 LDVDKAGLDMMDRKFLEAVLHKFSGGPVGLENVAAAIGESTDTIEDVIEPYLIQQGLLQR 326 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR+ A++H G+ Sbjct: 327 TPRGRVATAGAFEHFGL 343 >gi|170769448|ref|ZP_02903901.1| Holliday junction DNA helicase RuvB [Escherichia albertii TW07627] gi|170121772|gb|EDS90703.1| Holliday junction DNA helicase RuvB [Escherichia albertii TW07627] Length = 336 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ ++A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 TISADVAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATARAWNHFGITPPE 334 >gi|308049715|ref|YP_003913281.1| Holliday junction DNA helicase RuvB [Ferrimonas balearica DSM 9799] gi|307631905|gb|ADN76207.1| Holliday junction DNA helicase RuvB [Ferrimonas balearica DSM 9799] Length = 336 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/308 (63%), Positives = 242/308 (78%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++TGQ EA + L+VFI+AA+ R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 24 MRPKMLTDYTGQDEAKAQLEVFIQAARNRGEALDHLLIFGPPGLGKTTLANIVANEMGVN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 84 IKSTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTLI ATTR G LT+PL+ RFGIP+RL FY + DL IVQR A++ L Sbjct: 144 PAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLRLEFYNVRDLTQIVQRSAEVLDL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ + A EIA RSRGTPRIA RLLRRVRDFAEV IT E+A AL L +DK GFD Sbjct: 204 SMEGDGAVEIARRSRGTPRIANRLLRRVRDFAEVKFDGVITAEVAAKALDLLDVDKEGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD + LT I F GGPVG+E ++A + E R+ IED++EP++IQQGF+QRTPRGR+ Sbjct: 264 YLDRKLLTTIIDKFSGGPVGLENLAAAIGEERETIEDVLEPFLIQQGFLQRTPRGRIATD 323 Query: 322 IAWQHLGI 329 A+QH G+ Sbjct: 324 RAYQHFGL 331 >gi|24113210|ref|NP_707720.1| Holliday junction DNA helicase RuvB [Shigella flexneri 2a str. 301] gi|30063271|ref|NP_837442.1| Holliday junction DNA helicase RuvB [Shigella flexneri 2a str. 2457T] gi|110805804|ref|YP_689324.1| Holliday junction DNA helicase RuvB [Shigella flexneri 5 str. 8401] gi|44888468|sp|Q83KR5|RUVB_SHIFL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|122957400|sp|Q0T3U6|RUVB_SHIF8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|24052206|gb|AAN43427.1| Holliday junction helicase subunit A [Shigella flexneri 2a str. 301] gi|30041523|gb|AAP17251.1| Holliday junction helicase subunit A [Shigella flexneri 2a str. 2457T] gi|110615352|gb|ABF04019.1| Holliday junction helicase [Shigella flexneri 5 str. 8401] gi|281601275|gb|ADA74259.1| Holliday junction ATP-dependent DNA helicase ruvB [Shigella flexneri 2002017] gi|313650644|gb|EFS15046.1| holliday junction DNA helicase RuvB [Shigella flexneri 2a str. 2457T] gi|332756760|gb|EGJ87107.1| holliday junction DNA helicase RuvB [Shigella flexneri 4343-70] gi|332757637|gb|EGJ87970.1| holliday junction DNA helicase RuvB [Shigella flexneri 2747-71] gi|332758048|gb|EGJ88374.1| holliday junction DNA helicase RuvB [Shigella flexneri K-671] gi|332766836|gb|EGJ97037.1| holliday junction DNA helicase RuvB [Shigella flexneri 2930-71] gi|333003564|gb|EGK23104.1| holliday junction DNA helicase RuvB [Shigella flexneri VA-6] gi|333004731|gb|EGK24253.1| holliday junction DNA helicase RuvB [Shigella flexneri K-218] gi|333018629|gb|EGK37923.1| holliday junction DNA helicase RuvB [Shigella flexneri K-304] Length = 336 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGAQEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ +IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 >gi|119896892|ref|YP_932105.1| Holliday junction DNA helicase RuvB [Azoarcus sp. BH72] gi|166231461|sp|A1K313|RUVB_AZOSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|119669305|emb|CAL93218.1| holliday junction DNA helicase [Azoarcus sp. BH72] Length = 352 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/319 (61%), Positives = 242/319 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QEDA LRP+ L E+ GQ + L++FI AAK R+EALDHVL GPPGLGKTTLA + Sbjct: 24 QEDAVERALRPKRLAEYVGQAKIREQLEIFIHAAKKRSEALDHVLLFGPPGLGKTTLAHI 83 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+EDFQ Sbjct: 84 VAAEMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDFQ 143 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L IV Sbjct: 144 IDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTPDELGFIVS 203 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A+L + + D+ A EIA R+RGTPRIA RLLRRVRD+AEV ITR +ADAAL L Sbjct: 204 RSARLLNVEIDDDGALEIARRARGTPRIANRLLRRVRDYAEVKAGGHITRAVADAALRML 263 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +G D +D + L+ + FGGGPVG++ ++A + E D IED+IEPY+IQQG++QRT Sbjct: 264 DVDSLGLDLMDRKMLSAMLEKFGGGPVGLDNLAAAIGESTDTIEDVIEPYLIQQGYLQRT 323 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ WQH G+ P Sbjct: 324 PRGRMATHSIWQHFGLAPP 342 >gi|83859805|ref|ZP_00953325.1| Holliday junction DNA helicase RuvB [Oceanicaulis alexandrii HTCC2633] gi|83852164|gb|EAP90018.1| Holliday junction DNA helicase RuvB [Oceanicaulis alexandrii HTCC2633] Length = 345 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 249/327 (76%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 ++S + D LRP + +EF GQ A +NLKVF +AA R EALDHVL GPPGLG Sbjct: 8 IISAEANPGDGRDKALRPLSFDEFVGQPAAIANLKVFTQAAARRGEALDHVLLSGPPGLG 67 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLAQ+VA+ELGVNFR+TSGPVIAKAGDLAA+LTNLE+RDVLFIDEIHRL VEEILY Sbjct: 68 KTTLAQIVAKELGVNFRATSGPVIAKAGDLAAILTNLEERDVLFIDEIHRLLPAVEEILY 127 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDF LDL++GEGPSAR+V+I+L FTL+ ATTR GLL PL+DRFG+P+RL FY E Sbjct: 128 PAMEDFCLDLVIGEGPSARTVRIDLPPFTLVGATTRAGLLATPLRDRFGVPVRLEFYSTE 187 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L IV R A G ++++ A EIA R+RGTPR+AGRLLRRVRDFAE I + A Sbjct: 188 ELSGIVARAANKLGAPMSEDGATEIAKRARGTPRVAGRLLRRVRDFAEEDGVPVINAKAA 247 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 DAAL RL +D +G D LD RYL ++ FGGGP G+ET++A +E RDA+ED++EP++IQ Sbjct: 248 DAALRRLEVDAVGLDSLDRRYLRVLIEGFGGGPAGVETLAAACAEARDALEDVVEPFLIQ 307 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 QGFI RTPRGR+ A++HLG +P Sbjct: 308 QGFIMRTPRGRVAAKRAYEHLGFTMPR 334 >gi|197106548|ref|YP_002131925.1| Holliday junction DNA helicase RuvB [Phenylobacterium zucineum HLK1] gi|238690136|sp|B4R9Z2|RUVB_PHEZH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|196479968|gb|ACG79496.1| Holliday junction DNA helicase RuvB [Phenylobacterium zucineum HLK1] Length = 344 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/311 (63%), Positives = 246/311 (79%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL EF GQ +A +NL VFI+AA+ R EALDHVL GPPGLGKTTLAQ++ARELGVN Sbjct: 19 LRPQTLSEFVGQEQAKANLSVFIDAARGRGEALDHVLLFGPPGLGKTTLAQILARELGVN 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR+TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ VEEILYPAMED LDL++GEG Sbjct: 79 FRATSGPVLAKAGDLAAILTNLEPRDVLFIDEIHRLAANVEEILYPAMEDHVLDLVIGEG 138 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV+I+L+ FTL+AATTR GLL PL+DRFGIP+RL FY ++L ++ A G Sbjct: 139 PSARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPVRLEFYTHDELARVLLGAAAKMGA 198 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA R+RGTPR+AGRLLRRVRDFA A+ I R+ A AAL RL +D++G D Sbjct: 199 PLDPSGAREIAARARGTPRVAGRLLRRVRDFAAADGAEVIDRKAAAAALARLDVDEVGLD 258 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD RYL + N+ GGP G+ET++ ++E RDA+ED+IEP+++QQGFIQRTPRGR+ Sbjct: 259 ALDRRYLRALIENYAGGPAGVETLAYAIAEARDAVEDVIEPFLLQQGFIQRTPRGRMACA 318 Query: 322 IAWQHLGIDIP 332 A++HLG+ P Sbjct: 319 KAYEHLGLQAP 329 >gi|254419031|ref|ZP_05032755.1| Holliday junction DNA helicase RuvB [Brevundimonas sp. BAL3] gi|196185208|gb|EDX80184.1| Holliday junction DNA helicase RuvB [Brevundimonas sp. BAL3] Length = 343 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 202/309 (65%), Positives = 250/309 (80%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL EF GQ +A NLKVFI+AA+ RAEALDHVL GPPGLGKTTLAQ+VARELGV Sbjct: 19 LRPQTLSEFVGQSQAKGNLKVFIDAARGRAEALDHVLLFGPPGLGKTTLAQIVARELGVG 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR+TSGP++AKAGDLAA+LTNLE RDVLFIDEIHRLS VEEILYPAMED LDL++GEG Sbjct: 79 FRATSGPILAKAGDLAAILTNLEPRDVLFIDEIHRLSPNVEEILYPAMEDHVLDLIIGEG 138 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV+I+L+ FTL+ ATTR GLL PL+DRFGIP+RL FY ++L +V+ A+ G Sbjct: 139 PSARSVRIDLAPFTLVGATTRAGLLATPLRDRFGIPLRLEFYTPDELTAVVRGTARKMGA 198 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ + A EIA R+RGTPRIAGRLLRRVRDFA A+TI++ +A AL RL +D+ G D Sbjct: 199 AIDEAGAREIASRARGTPRIAGRLLRRVRDFASADGAETISKLVAAKALARLEVDEAGLD 258 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R+L + N+GGGPVG++T++A ++E RDA+ED+IEPY++QQGFI RTPRGR+ Sbjct: 259 SLDRRFLKALIENYGGGPVGMDTLAAAIAEARDAVEDVIEPYLLQQGFIMRTPRGRMACA 318 Query: 322 IAWQHLGID 330 A+ HLG++ Sbjct: 319 KAYAHLGLN 327 >gi|156933561|ref|YP_001437477.1| Holliday junction DNA helicase RuvB [Cronobacter sakazakii ATCC BAA-894] gi|166231491|sp|A7MEA3|RUVB_ENTS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|156531815|gb|ABU76641.1| hypothetical protein ESA_01381 [Cronobacter sakazakii ATCC BAA-894] Length = 336 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/322 (60%), Positives = 247/322 (76%), Gaps = 1/322 (0%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V++E AD ++ RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L GPPGLGKTTLA Sbjct: 14 VAEEVADRAI-RPKLLEEYIGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTLA 72 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED Sbjct: 73 NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL FY++ DL+ I Sbjct: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHI 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V R A+ GL + DEA+ E+A RSRGTPRIA RLLRRVRDFAEV H I + +A AL Sbjct: 193 VSRSARHMGLEMNDEASLEVAKRSRGTPRIANRLLRRVRDFAEVRHDGVINQHVASQALD 252 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L +D GFD +D + L + F GGPVG++ ++A + E R+ IED++EP++IQQGF+Q Sbjct: 253 MLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFLQ 312 Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333 RTPRGR+ AW H GI P Sbjct: 313 RTPRGRMATTRAWNHFGITPPQ 334 >gi|283832741|ref|ZP_06352482.1| holliday junction DNA helicase RuvB [Citrobacter youngae ATCC 29220] gi|291072424|gb|EFE10533.1| holliday junction DNA helicase RuvB [Citrobacter youngae ATCC 29220] Length = 336 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/312 (61%), Positives = 242/312 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKLLEEYIGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL FY++ DL+ IV R A+ GL Sbjct: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVGRSARFMGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++DE A E+A R+RGTPRIA RLLRRVRDFAEV H TI+ +IA AL L +D GFD Sbjct: 203 EMSDEGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+ Sbjct: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATV 322 Query: 322 IAWQHLGIDIPH 333 AW H GI P Sbjct: 323 RAWNHFGITPPE 334 >gi|294669179|ref|ZP_06734259.1| holliday junction DNA helicase RuvB [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308811|gb|EFE50054.1| holliday junction DNA helicase RuvB [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 343 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/319 (61%), Positives = 243/319 (76%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+ LRP+ L ++ GQ +A L++FI+AAK R EALDH L GPPGLGKTTLA Sbjct: 23 SQEEQLERALRPKLLADYIGQHKAKEQLEIFIQAAKKRGEALDHTLLFGPPGLGKTTLAN 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY DL TIV Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNHADLATIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L L + + A E+A RSRGTPRIA RLLRRVRD+AEV +I+ + ADAAL Sbjct: 203 RRSAHLLQLDMDESGAMEVAKRSRGTPRIANRLLRRVRDYAEVKGDGSISAKTADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +G D +D ++L + FGGGPVG+E I+A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAVGLDVMDRKFLEAVLHKFGGGPVGLENIAAAIGESPDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ I++ H G+ + Sbjct: 323 TPRGRMATEISYLHFGLPV 341 >gi|59711559|ref|YP_204335.1| Holliday junction DNA helicase B [Vibrio fischeri ES114] gi|71649491|sp|Q5E699|RUVB_VIBF1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|59479660|gb|AAW85447.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Vibrio fischeri ES114] Length = 337 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/321 (60%), Positives = 246/321 (76%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +ED +RP+ L+++ GQ S +++FI+AA+ R EALDH+L GPPGLGKTTLA + Sbjct: 17 EEDVIDRAIRPKKLDDYQGQDHVRSQMEIFIKAAQMREEALDHLLIFGPPGLGKTTLANI 76 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ D+LFIDEIHRLS +VEE+LYPAMED+Q Sbjct: 77 VANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDILFIDEIHRLSPMVEEVLYPAMEDYQ 136 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y++EDL+ IVQ Sbjct: 137 LDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVEDLQHIVQ 196 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L++ E A E+A R+RGTPRIA RLLRRVRD+AEV I+ EIAD AL L Sbjct: 197 RSADCLNLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVMSDGNISSEIADKALNML 256 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L I F GGPVG++ I+A + E RD IED+IEPY+IQQG++QRT Sbjct: 257 DVDVRGFDYMDRKLLLAIMEKFDGGPVGLDNIAAAIGEERDTIEDVIEPYLIQQGYLQRT 316 Query: 314 PRGRLLMPIAWQHLGIDIPHR 334 PRGR++ A+ H GID P + Sbjct: 317 PRGRIVSDRAYLHFGIDKPDK 337 >gi|187927479|ref|YP_001897966.1| Holliday junction DNA helicase RuvB [Ralstonia pickettii 12J] gi|241662009|ref|YP_002980369.1| Holliday junction DNA helicase RuvB [Ralstonia pickettii 12D] gi|309779819|ref|ZP_07674574.1| holliday junction DNA helicase RuvB [Ralstonia sp. 5_7_47FAA] gi|238691842|sp|B2UFL1|RUVB_RALPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|187724369|gb|ACD25534.1| Holliday junction DNA helicase RuvB [Ralstonia pickettii 12J] gi|240864036|gb|ACS61697.1| Holliday junction DNA helicase RuvB [Ralstonia pickettii 12D] gi|308921396|gb|EFP67038.1| holliday junction DNA helicase RuvB [Ralstonia sp. 5_7_47FAA] Length = 357 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/319 (61%), Positives = 240/319 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L+E+ GQ + L +F+ AAK R+EALDHVL GPPGLGKTTLA + Sbjct: 26 NEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKNRSEALDHVLLFGPPGLGKTTLAHI 85 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 86 IAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 145 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY +L IV Sbjct: 146 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPAELAKIVT 205 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R + L + DE A EIA RSRGTPRIA RLLRRVRDFAEV ITRE+ADAAL L Sbjct: 206 RSSGLLNAHIVDEGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGIITREVADAALAML 265 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT Sbjct: 266 DVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 325 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A+QH G+ P Sbjct: 326 PRGRVATASAYQHFGLGAP 344 >gi|91776696|ref|YP_546452.1| Holliday junction DNA helicase B [Methylobacillus flagellatus KT] gi|122985393|sp|Q1GYS6|RUVB_METFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|91710683|gb|ABE50611.1| Holliday junction DNA helicase subunit RuvB [Methylobacillus flagellatus KT] Length = 345 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/326 (59%), Positives = 249/326 (76%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S +QE+A LRP+ L+E+ GQ +A L++FI AA+ R+EALDHVL GPPGLGKT Sbjct: 11 STQGTQEEALECALRPKVLDEYVGQEKARGQLEIFINAARGRSEALDHVLLFGPPGLGKT 70 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA ++A+E+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA Sbjct: 71 TLAHIIAKEMGVNMRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPA 130 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED++LD+M+GEGP+ARSV+++L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L Sbjct: 131 MEDYRLDIMIGEGPAARSVRLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTADEL 190 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 IV R A L +A+ E A EIA RSRGTPRIA RLLRRVRD+A+V ++ +IADA Sbjct: 191 ARIVHRSAGLLEVAIQQEGALEIARRSRGTPRIANRLLRRVRDYAQVKSDGVVSADIADA 250 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L +DK+GFD +D + L + F GGPVG++ ++A + E RD IED++EPY+IQQG Sbjct: 251 ALKMLDVDKLGFDVMDRKLLLAVLEKFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQG 310 Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++ RTPRGR+ A+QH G+ IP + Sbjct: 311 YLMRTPRGRIATQQAYQHFGLAIPGK 336 >gi|206580921|ref|YP_002237748.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae 342] gi|288934606|ref|YP_003438665.1| Holliday junction DNA helicase RuvB [Klebsiella variicola At-22] gi|226698780|sp|B5XQ05|RUVB_KLEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|206569979|gb|ACI11755.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae 342] gi|288889315|gb|ADC57633.1| Holliday junction DNA helicase RuvB [Klebsiella variicola At-22] Length = 336 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/333 (59%), Positives = 253/333 (75%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + S E+A +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLVSADSSGAEEAVDRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY+I DL+ IV R A+ GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQIPDLQHIVSRSARHMGLEMSDEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 +I+ +IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 SISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 333 >gi|170693378|ref|ZP_02884537.1| Holliday junction DNA helicase RuvB [Burkholderia graminis C4D1M] gi|170141533|gb|EDT09702.1| Holliday junction DNA helicase RuvB [Burkholderia graminis C4D1M] Length = 354 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/320 (60%), Positives = 242/320 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRPR LEE+ GQ + L++FIEAAK R+E+LDHVL GPPGLGKTTLA + Sbjct: 21 NEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 80 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 81 IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 140 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 141 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVT 200 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + + A EIA R+RGTPRIA RLLRRVRDFAEV IT E+ADAAL L Sbjct: 201 RSASLLNAQIHPDGAFEIAKRARGTPRIANRLLRRVRDFAEVKADGNITAEVADAALRML 260 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT Sbjct: 261 DVDAVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 320 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 PRGR+ + ++H G+ P Sbjct: 321 PRGRVATLLTYRHFGLAAPE 340 >gi|330815559|ref|YP_004359264.1| Holliday junction DNA helicase RuvB [Burkholderia gladioli BSR3] gi|327367952|gb|AEA59308.1| Holliday junction DNA helicase RuvB [Burkholderia gladioli BSR3] Length = 355 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/320 (60%), Positives = 243/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+A LRPR L+E+ GQ + L++FIEAAK R+EALDHVL GPPGLGKTTLA Sbjct: 20 SHEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAGQLSRIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR A L + + A EIA RSRGTPRIA RLLRRVRD+AEV IT E+ADAAL Sbjct: 200 QRSASLLQARIDPQGALEIARRSRGTPRIANRLLRRVRDYAEVKADGAITAEVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ +P Sbjct: 320 TPRGRVATLLTYRHFGLPVP 339 >gi|237654484|ref|YP_002890798.1| Holliday junction DNA helicase RuvB [Thauera sp. MZ1T] gi|237625731|gb|ACR02421.1| Holliday junction DNA helicase RuvB [Thauera sp. MZ1T] Length = 351 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/321 (61%), Positives = 244/321 (76%), Gaps = 1/321 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QEDA LRP+ L E+ GQV+ L++FI+AA+ R+EALDHVL GPPGLGKTTLA + Sbjct: 25 QEDAIERALRPKRLAEYVGQVKIREQLEIFIQAARNRSEALDHVLLFGPPGLGKTTLAHI 84 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+EDFQ Sbjct: 85 VAAEMGVNMRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDFQ 144 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L IV Sbjct: 145 IDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTADELAFIVG 204 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A+L + + D A EIA R+RGTPRIA RLLRRVRD+AEV IT +ADAAL L Sbjct: 205 RSARLLNVEIEDNGALEIARRARGTPRIANRLLRRVRDYAEVKAGGRITAAVADAALRML 264 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +G D +D + L+ + FGGGPVG++ I+A + E D IED+IEPY+IQQG++QRT Sbjct: 265 DVDNLGLDLMDRKLLSAMLEKFGGGPVGLDNIAAAIGESTDTIEDVIEPYLIQQGYLQRT 324 Query: 314 PRGRLLMPIAWQHLGIDIPHR 334 PRGR+ WQH G+ +P R Sbjct: 325 PRGRMATQSIWQHFGL-VPPR 344 >gi|224827247|ref|ZP_03700341.1| Holliday junction DNA helicase RuvB [Lutiella nitroferrum 2002] gi|224600536|gb|EEG06725.1| Holliday junction DNA helicase RuvB [Lutiella nitroferrum 2002] Length = 344 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/317 (61%), Positives = 240/317 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+A LRP+ L+++ GQ +A L++FIEAAK R EALDHVL GPPGLGKTTLA Sbjct: 24 AQEEALERALRPKALDDYVGQKKAREQLEIFIEAAKKRGEALDHVLLFGPPGLGKTTLAH 83 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 84 IVAREMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 143 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 144 QIDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELTRIV 203 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L + + D A E+A RSRGTPRIA RLLRRVRD+AEV +T +ADAAL Sbjct: 204 SRSAGLLNVTLADNGAFEVARRSRGTPRIANRLLRRVRDYAEVKADGVVTATVADAALAM 263 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D + L I F GGPVG++ ++A + E D IED+IEPY+IQQG++QR Sbjct: 264 LDVDPAGLDVMDRKLLAAILEKFAGGPVGLDNVAAAIGESSDTIEDVIEPYLIQQGYLQR 323 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR+ A+QH G+ Sbjct: 324 TPRGRMATAQAYQHFGL 340 >gi|254294745|ref|YP_003060768.1| Holliday junction DNA helicase RuvB [Hirschia baltica ATCC 49814] gi|254043276|gb|ACT60071.1| Holliday junction DNA helicase RuvB [Hirschia baltica ATCC 49814] Length = 345 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 201/332 (60%), Positives = 248/332 (74%), Gaps = 2/332 (0%) Query: 2 MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M R+G ++ Q I LRP + ++FTGQ A +NLKVF++AA+ R +ALDHVL Sbjct: 3 MGRDGDITDPTRQPGETIDRALRPLSFDDFTGQASAKANLKVFVQAARNRGDALDHVLLF 62 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ+V+RE+GV FRSTSGPVI KAGDLAALLTNLE+ DVLFIDEIHRLS + Sbjct: 63 GPPGLGKTTLAQIVSREMGVGFRSTSGPVIGKAGDLAALLTNLEENDVLFIDEIHRLSPV 122 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMED LD+M+G+GPSARSVKI+L FTL+ ATTR GLL+ PL+DRFGIP+RL Sbjct: 123 VEEILYPAMEDHTLDIMIGDGPSARSVKIDLPPFTLVGATTRAGLLSTPLRDRFGIPVRL 182 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E+L IV + G +T+ A EIA R+RGTPRIA RLLRRVRDFAE + + Sbjct: 183 EFYTPEELGGIVFKAGIKMGAEITESGAIEIARRARGTPRIAIRLLRRVRDFAEADNVQ- 241 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I + A L RL +D G D LD RYL + + + GGPVG +T++A LSE RDAIE++I Sbjct: 242 IDKASASKGLARLEVDSDGLDALDRRYLNALVKTYSGGPVGADTLAAALSEARDAIEEVI 301 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++QQG + RTPRGR+ P A+Q LG+ P Sbjct: 302 EPYLMQQGLVARTPRGRVAAPGAYQRLGMPTP 333 >gi|187732707|ref|YP_001879637.1| Holliday junction DNA helicase RuvB [Shigella boydii CDC 3083-94] gi|238691714|sp|B2TWQ1|RUVB_SHIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|187429699|gb|ACD08973.1| Holliday junction DNA helicase RuvB [Shigella boydii CDC 3083-94] Length = 336 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+++GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIIIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ +IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 >gi|114327765|ref|YP_744922.1| Holliday junction DNA helicase RuvB [Granulibacter bethesdensis CGDNIH1] gi|122327269|sp|Q0BT53|RUVB_GRABC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|114315939|gb|ABI61999.1| holliday junction DNA helicase ruvB [Granulibacter bethesdensis CGDNIH1] Length = 359 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/328 (62%), Positives = 254/328 (77%), Gaps = 4/328 (1%) Query: 9 SRNVS----QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 +R VS ++DA + LRP++L EF GQ + NL +FI+AAKAR EA+DHVL GPPG Sbjct: 10 NRTVSSVRLEDDAAEASLRPQSLAEFIGQRASRENLSIFIQAAKARGEAMDHVLLHGPPG 69 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLAQ+V+RELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL +EE+ Sbjct: 70 LGKTTLAQIVSRELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEV 129 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDFQLDL++GEGP+ARSV+I+L+ FTL+AATTR GLL PL+DRFGIP+RL FY Sbjct: 130 LYPAMEDFQLDLIIGEGPAARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPLRLIFYT 189 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +L+ IV RGA+ G ++ E A EIA RSRGTPRIAGRLLRRVRDFA V + R Sbjct: 190 ASELELIVSRGAEKLGFDLSREGAAEIARRSRGTPRIAGRLLRRVRDFAMVQGVSPVDRS 249 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 ADAAL RL +D +G D +D RYL IA + GGPVG+ET++A L+E RD +ED+IEPY+ Sbjct: 250 TADAALQRLEVDSLGLDAMDRRYLHRIAVHHAGGPVGVETLAAALAEARDTLEDVIEPYL 309 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 IQ+G I RT RGR+L W+HLG+ P Sbjct: 310 IQEGLILRTSRGRMLGEAGWRHLGLVPP 337 >gi|296101801|ref|YP_003611947.1| Holliday junction DNA helicase RuvB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056260|gb|ADF60998.1| Holliday junction DNA helicase RuvB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 336 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/333 (58%), Positives = 252/333 (75%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S Q D + +RP+ L+E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLVSAGTIQADDVVDRAIRPKLLDEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL +++E A E+A RSRGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVADLQHIVGRSARYMGLDMSEEGAFEVAKRSRGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 +I+ EIA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 SISAEIAAQALDMLNVDAEGFDYMDRKLLLAVLDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 333 >gi|157145361|ref|YP_001452680.1| Holliday junction DNA helicase RuvB [Citrobacter koseri ATCC BAA-895] gi|166231482|sp|A8AFI1|RUVB_CITK8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157082566|gb|ABV12244.1| hypothetical protein CKO_01101 [Citrobacter koseri ATCC BAA-895] Length = 336 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S +Q E+ +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGGTQVEEVADRAIRPKLLEEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++DE A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQHIVGRSARFMGLEMSDEGALEVARRARGTPRIANRLLRRVRDFAEVKHNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ +IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334 >gi|209543385|ref|YP_002275614.1| Holliday junction DNA helicase RuvB [Gluconacetobacter diazotrophicus PAl 5] gi|209531062|gb|ACI50999.1| Holliday junction DNA helicase RuvB [Gluconacetobacter diazotrophicus PAl 5] Length = 348 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/326 (63%), Positives = 254/326 (77%), Gaps = 2/326 (0%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 +RN EDA + LRP+TL++FTGQ + NL +FI AA+ R EA+DHVL GPPGLGKT Sbjct: 12 ARNA--EDAAEAGLRPQTLDDFTGQKASRENLAIFIAAARQRGEAMDHVLLHGPPGLGKT 69 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLAQ+VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL +EE+LYPA Sbjct: 70 TLAQIVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEVLYPA 129 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDFQLDL++GEGP+ARSV+I+LS FTL+AATTR GLL PL+DRFGIP+RL FY ++L Sbjct: 130 MEDFQLDLIIGEGPAARSVRIDLSPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPDEL 189 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + IV RGA+ +T E A EIA RSRGTPRIAGRLLRRVRDFA V + R +ADA Sbjct: 190 RQIVSRGARKLEFDLTPEGAEEIARRSRGTPRIAGRLLRRVRDFASVTRGGPVDRAMADA 249 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL RL +D +G D +D RYL IA + GGPVG+ET++A L+E RD +ED++EPY+IQ+G Sbjct: 250 ALSRLEVDSLGLDGMDRRYLRRIAEHHHGGPVGVETLAAALAEARDTLEDVVEPYLIQEG 309 Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334 + RT RGR+L W+HLG+ P R Sbjct: 310 LVLRTSRGRMLGERGWRHLGLAPPPR 335 >gi|238026245|ref|YP_002910476.1| Holliday junction DNA helicase RuvB [Burkholderia glumae BGR1] gi|237875439|gb|ACR27772.1| Holliday junction DNA helicase RuvB [Burkholderia glumae BGR1] Length = 355 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/320 (60%), Positives = 241/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+A LRPR L+E+ GQ + L++FIEAAK RAEALDHVL GPPGLGKTTLA Sbjct: 20 SHEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRAEALDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VARE+GVN R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IVAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDASQLSRIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR A L + A EIA R+RGTPRIA RLLRRVRD+AEV IT +ADAAL Sbjct: 200 QRSASLLNARIDPHGALEIARRARGTPRIANRLLRRVRDYAEVKADGEITERVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ +P Sbjct: 320 TPRGRVATLLTYRHFGLPVP 339 >gi|212635162|ref|YP_002311687.1| Holliday junction DNA helicase RuvB [Shewanella piezotolerans WP3] gi|226725464|sp|B8CNY1|RUVB_SHEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|212556646|gb|ACJ29100.1| Holliday junction DNA helicase RuvB [Shewanella piezotolerans WP3] Length = 336 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/312 (61%), Positives = 244/312 (78%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E+TGQ + + LK+FIEAA+ R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 MRPKLLDEYTGQDDTRAQLKIFIEAAQKRGEALDHMLIYGPPGLGKTTLAMIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG Sbjct: 83 IKSTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATT+ G LT+PL+ RFGIP+RL FY I+DL TIV R AK+ L Sbjct: 143 PAARSIKLDLPPFTLVGATTQAGSLTSPLRARFGIPLRLEFYNIKDLSTIVIRSAKVMEL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E A EIA RSRGTPRIA RLLRRVRDFAEV H+ +T+ +A+ AL L +D GFD Sbjct: 203 EIDEEGAIEIARRSRGTPRIANRLLRRVRDFAEVKHSGAVTKVVAELALDMLDVDAEGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E R+ IED++EP++IQQGF+QRTPRGR+ Sbjct: 263 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFVQRTPRGRIATQ 322 Query: 322 IAWQHLGIDIPH 333 A+ H + P Sbjct: 323 RAYNHFNLIQPE 334 >gi|163751785|ref|ZP_02159002.1| Holliday junction DNA helicase RuvB [Shewanella benthica KT99] gi|161328349|gb|EDP99509.1| Holliday junction DNA helicase RuvB [Shewanella benthica KT99] Length = 339 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/313 (61%), Positives = 242/313 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E+TGQ + LKVFI+AAK R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 26 MRPKLLDEYTGQDATRAQLKVFIQAAKNRGEALDHMLIYGPPGLGKTTLALIVANEMGVN 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG Sbjct: 86 IKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 145 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTLI ATTR G LT+PL+ RFGIP+RL FY ++DL TIV R AK+ L Sbjct: 146 PAARSIKLDLPPFTLIGATTRAGALTSPLRSRFGIPLRLEFYNVKDLSTIVTRSAKVLEL 205 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E + EIA RSRGTPRIA RLLRRVRD+AEV H I + +AD AL L +D GFD Sbjct: 206 PIDEEGSLEIARRSRGTPRIANRLLRRVRDYAEVKHDGEINKHVADLALEMLDVDVEGFD 265 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+ Sbjct: 266 YMDRKLMLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRIATQ 325 Query: 322 IAWQHLGIDIPHR 334 A+QH + P + Sbjct: 326 RAYQHFNLIQPEQ 338 >gi|187925319|ref|YP_001896961.1| Holliday junction DNA helicase RuvB [Burkholderia phytofirmans PsJN] gi|238689584|sp|B2SYK2|RUVB_BURPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|187716513|gb|ACD17737.1| Holliday junction DNA helicase RuvB [Burkholderia phytofirmans PsJN] Length = 354 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/319 (60%), Positives = 242/319 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRPR LEE+ GQ + L++FIEAAK R+E+LDHVL GPPGLGKTTLA + Sbjct: 21 NEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 80 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 81 IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 140 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 141 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVT 200 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + + A EIA R+RGTPRIA RLLRRVRDFAEV IT ++ADAAL L Sbjct: 201 RSASLLNAQIHPDGAFEIAKRARGTPRIANRLLRRVRDFAEVKADGNITAQVADAALKML 260 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT Sbjct: 261 DVDAVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 320 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ + ++H G+ P Sbjct: 321 PRGRVATLLTYRHFGLAAP 339 >gi|73540189|ref|YP_294709.1| Holliday junction DNA helicase B [Ralstonia eutropha JMP134] gi|97190244|sp|Q475R8|RUVB_RALEJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|72117602|gb|AAZ59865.1| Holliday junction DNA helicase subunit RuvB [Ralstonia eutropha JMP134] Length = 352 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/321 (60%), Positives = 245/321 (76%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S+E+A LRP+ L+E+ GQ + L +F+ AA+ R EALDHVL GPPGLGKTTLA Sbjct: 21 SREEAFERALRPKLLDEYVGQEKVRGQLDIFMHAARNRREALDHVLLFGPPGLGKTTLAH 80 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 81 IIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 141 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELARIV 200 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L G + + EIA R+RGTPRIA RLLRRVRD+AEV TITREIADAAL Sbjct: 201 TRSAQLLGAHIDPLGSLEIARRARGTPRIANRLLRRVRDYAEVKGDGTITREIADAALAM 260 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D++GFD +D + L + FGGGPVG++ ++A + E RD IED++EPY+IQQG++QR Sbjct: 261 LDVDRVGFDLMDRKLLEAVLHKFGGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGYLQR 320 Query: 313 TPRGRLLMPIAWQHLGIDIPH 333 TPRGR+ A++H G+ P Sbjct: 321 TPRGRVATAAAYRHFGLASPQ 341 >gi|290508807|ref|ZP_06548178.1| Holliday junction DNA helicase RuvB [Klebsiella sp. 1_1_55] gi|289778201|gb|EFD86198.1| Holliday junction DNA helicase RuvB [Klebsiella sp. 1_1_55] Length = 336 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/318 (61%), Positives = 244/318 (76%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E+A +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 16 EEAVDRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED+QL Sbjct: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL FY+I DL+ IV R Sbjct: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQIPDLQHIVSR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A+ GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H +I+ +IA AL L Sbjct: 196 SARHMGLEMSDEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDGSISADIAAQALDMLN 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTP Sbjct: 256 VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW H GI P Sbjct: 316 RGRMATVRAWNHFGITPP 333 >gi|261340246|ref|ZP_05968104.1| holliday junction DNA helicase RuvB [Enterobacter cancerogenus ATCC 35316] gi|288317331|gb|EFC56269.1| holliday junction DNA helicase RuvB [Enterobacter cancerogenus ATCC 35316] Length = 336 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/318 (60%), Positives = 244/318 (76%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L+E+ GQ + S +++FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 16 EDVVDRAIRPKLLDEYIGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED+QL Sbjct: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL FY++ DL+ IV R Sbjct: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A+ GL +++E A E+A RSRGTPRIA RLLRRVRDFAEV H +I+ +IA AL L Sbjct: 196 SARFMGLEMSEEGAYEVAKRSRGTPRIANRLLRRVRDFAEVKHDGSISADIAAQALDMLN 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L I F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTP Sbjct: 256 VDAEGFDYMDRKLLLAILDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW H GI P Sbjct: 316 RGRMATARAWDHFGITPP 333 >gi|167571208|ref|ZP_02364082.1| Holliday junction DNA helicase B [Burkholderia oklahomensis C6786] Length = 356 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/320 (60%), Positives = 243/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + E+A LRPR L+E+ GQ + L++FIEAAK R+EALDHVL GPPGLGKTTLA Sbjct: 20 THEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ E L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRD+AEV +IT +ADAAL Sbjct: 200 RRSAALLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDYAEVRADGSITVAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339 >gi|260598335|ref|YP_003210906.1| Holliday junction DNA helicase RuvB [Cronobacter turicensis z3032] gi|260217512|emb|CBA31689.1| Holliday junction ATP-dependent DNA helicase ruvB [Cronobacter turicensis z3032] Length = 336 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/322 (59%), Positives = 247/322 (76%), Gaps = 1/322 (0%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V++E AD ++ RP+ L+E+ GQ + S +++FI+AAK R +ALDH+L GPPGLGKTTLA Sbjct: 14 VAEEVADRAM-RPKLLDEYIGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTLA 72 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED Sbjct: 73 NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL FY++ DL+ I Sbjct: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHI 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V R A+ GL + DEA+ E+A RSRGTPRIA RLLRRVRDFAEV H I + +A AL Sbjct: 193 VSRSARHMGLEMNDEASFEVAKRSRGTPRIANRLLRRVRDFAEVRHDGVINQHVASLALD 252 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L +D GFD +D + L + F GGPVG++ ++A + E R+ IED++EP++IQQGF+Q Sbjct: 253 MLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFLQ 312 Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333 RTPRGR+ AW H GI P Sbjct: 313 RTPRGRMATTRAWNHFGITPPQ 334 >gi|290475278|ref|YP_003468166.1| Holliday junction helicase subunit B [Xenorhabdus bovienii SS-2004] gi|289174599|emb|CBJ81393.1| Holliday junction helicase, subunit B [Xenorhabdus bovienii SS-2004] Length = 335 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/330 (58%), Positives = 252/330 (76%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V Q+D I +RP+ L E+ GQ C +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRLISAEVLQDDEVIDRAIRPKLLSEYVGQPHVCEQMEIFIQAARQRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLDLM+GEGP+ARS+KI+L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDLMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL++IV R A+ GL +++E A +IAMRSRGTPRI RLLRRVRDF++V Sbjct: 181 LEFYNVDDLQSIVSRSARYMGLGISEEGARQIAMRSRGTPRITNRLLRRVRDFSQVKGDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 +I +IA AL L++D GFD LD + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 SINGDIAVQALDMLSVDSAGFDYLDRKLLIAIIDKFMGGPVGVDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EP++IQQGFIQRTPRGR+ A++H G+ Sbjct: 301 LEPFLIQQGFIQRTPRGRIATNHAYRHFGL 330 >gi|300723092|ref|YP_003712390.1| Holliday junction helicase subunit B [Xenorhabdus nematophila ATCC 19061] gi|297629607|emb|CBJ90210.1| Holliday junction helicase, subunit B [Xenorhabdus nematophila ATCC 19061] Length = 335 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/330 (58%), Positives = 249/330 (75%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + Q+D I +RP+ L E+ GQ C +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRLVSAEILQDDEAIDRAIRPKFLSEYVGQPHVCEQMEIFIQAARQRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY + DL++IV R A GL ++D+ A +IAMRSRGTPRI RLLRRVRDFAEV Sbjct: 181 LEFYNVNDLQSIVSRSAHYMGLNISDDGARQIAMRSRGTPRITNRLLRRVRDFAEVKGDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 ++ +IA AL L +D GFD LD + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 SVNSDIAAQALNMLNVDSAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EP++IQQGFIQRTPRGR+ A++H G+ Sbjct: 301 LEPFLIQQGFIQRTPRGRIATNHAYRHFGL 330 >gi|34499670|ref|NP_903885.1| Holliday junction DNA helicase RuvB [Chromobacterium violaceum ATCC 12472] gi|44888391|sp|Q7NQC5|RUVB_CHRVO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|34105521|gb|AAQ61875.1| holliday junction DNA helicase ruvB [Chromobacterium violaceum ATCC 12472] Length = 345 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/323 (60%), Positives = 242/323 (74%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 R QE+A LRP+ L+E+ GQ +A L++FIEAAK R EALDHVL GPPGLGKT Sbjct: 20 QRASEQEEALERALRPKLLDEYVGQKKAREQLEIFIEAAKKRGEALDHVLLFGPPGLGKT 79 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA Sbjct: 80 TLAHIVAREMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPA 139 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 +ED+Q+D+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L Sbjct: 140 LEDYQIDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEEL 199 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 IV R A L + ++D+ A E+A RSRGTPRIA RLLRRVRD+AEV +T +ADA Sbjct: 200 TRIVSRSAGLLNVQLSDDGAFEVAKRSRGTPRIANRLLRRVRDYAEVKSDGVVTMAVADA 259 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L +D G D +D + L I F GGPVG++ ++A + E D IED+IEP++IQQG Sbjct: 260 ALAMLDVDPAGLDVMDRKLLQAILEKFSGGPVGLDNVAAAIGESTDTIEDVIEPFLIQQG 319 Query: 309 FIQRTPRGRLLMPIAWQHLGIDI 331 ++QRTPRGR+ A+ H G+ + Sbjct: 320 YLQRTPRGRMATAQAYLHFGLPV 342 >gi|162146623|ref|YP_001601082.1| Holliday junction DNA helicase RuvB [Gluconacetobacter diazotrophicus PAl 5] gi|161785198|emb|CAP54744.1| Holliday junction ATP-dependent DNA helicase ruvB [Gluconacetobacter diazotrophicus PAl 5] Length = 348 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/322 (63%), Positives = 251/322 (77%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + EDA + LRP+TL++FTGQ + NL +FI AA+ R EA+DHVL GPPGLGKTTLAQ Sbjct: 14 NAEDAAEAGLRPQTLDDFTGQKASRENLAIFIAAARQRGEAMDHVLLHGPPGLGKTTLAQ 73 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL +EE+LYPAMEDF Sbjct: 74 IVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEVLYPAMEDF 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLDL++GEGP+ARSV+I+LS FTL+AATTR GLL PL+DRFGIP+RL FY ++L+ IV Sbjct: 134 QLDLIIGEGPAARSVRIDLSPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPDELRQIV 193 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 RGA+ +T E A EIA RSRGTPRIAGRLLRRVRDFA V + R +ADAAL R Sbjct: 194 SRGARKLEFDLTPEGAEEIARRSRGTPRIAGRLLRRVRDFASVTRGGPVDRAMADAALSR 253 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +G D +D RYL IA + GGPVG+ET++A L+E RD +ED++EPY+IQ+G + R Sbjct: 254 LEVDSLGLDGMDRRYLRRIAEHHHGGPVGVETLAAALAEARDTLEDVVEPYLIQEGLVLR 313 Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334 T RGR L W+HLG+ P R Sbjct: 314 TSRGRTLGERGWRHLGLAPPPR 335 >gi|283785599|ref|YP_003365464.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium ICC168] gi|282949053|emb|CBG88656.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium ICC168] Length = 336 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/322 (59%), Positives = 249/322 (77%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +++E AD ++ RP+ L+E+ GQ + S +++FI+AAK R +ALDH+L GPPGLGKTTL Sbjct: 13 TIAEEVADRAI-RPKLLDEYIGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTL 71 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAME Sbjct: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL FY++ DL+ Sbjct: 132 DYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQH 191 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R A+ GL ++++ A E+A R+RGTPRIA RLLRRVRDFAEV H TI+ EIA AL Sbjct: 192 IVGRSARFMGLEMSEDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISAEIAAQAL 251 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L +D GFD +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+ Sbjct: 252 DMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFL 311 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 QRTPRGR+ AW H GI P Sbjct: 312 QRTPRGRMATVRAWNHFGITPP 333 >gi|295677648|ref|YP_003606172.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1002] gi|295437491|gb|ADG16661.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1002] Length = 353 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/319 (60%), Positives = 243/319 (76%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRPR L+E+ GQ + L++FIEAAK R+E+LDHVL GPPGLGKTTLA + Sbjct: 21 NEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 80 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 81 IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 140 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 141 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVT 200 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L G + + A EIA R+RGTPRIA RLLRRVRDFAEV IT ++ADAAL L Sbjct: 201 RSAALLGAQIHPDGAFEIARRARGTPRIANRLLRRVRDFAEVKADGNITAQVADAALSML 260 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT Sbjct: 261 DVDAVGFDLMDRKLLEAILYKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 320 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ + ++H G+ P Sbjct: 321 PRGRVATLLTYRHFGLAAP 339 >gi|257095746|ref|YP_003169387.1| Holliday junction DNA helicase RuvB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048270|gb|ACV37458.1| Holliday junction DNA helicase RuvB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 354 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/318 (61%), Positives = 244/318 (76%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+A LRPR L ++ GQ + L +FIEAA+ R + LDHVL GPPGLGKTTLA Sbjct: 23 TQEEAIERALRPRCLADYVGQAKIREQLSIFIEAARRRNDTLDHVLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VA E+GVN RSTSGPV+ +AGDLAA+LTNLE RDVLFIDEIHRLS +VEEILYPA+EDF Sbjct: 83 IVAAEMGVNLRSTSGPVLERAGDLAAILTNLEPRDVLFIDEIHRLSPVVEEILYPALEDF 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 143 QIDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTPEELTLIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R ++L + + E A EIA RSRGTPRIA RLLRRVRDFAEV I+RE+AD ALL Sbjct: 203 TRSSQLLKVPIDQEGALEIARRSRGTPRIANRLLRRVRDFAEVRANGQISREVADLALLM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D + L+ + FGGGPVG++ ++A + E RD IED++EP++IQQGF+QR Sbjct: 263 LDVDHGGLDVMDRKLLSAVIDKFGGGPVGVDNLAAAIGEARDTIEDVLEPFLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGID 330 TPRGR+ ++HLG+D Sbjct: 323 TPRGRVATAAVYRHLGLD 340 >gi|332978481|gb|EGK15193.1| crossover junction ATP-dependent DNA helicase RuvB [Psychrobacter sp. 1501(2011)] Length = 325 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/314 (62%), Positives = 243/314 (77%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 Q+D S +RP TL E+ GQ ++VFIEAA+ R EALDH L GPPGLGKTTLA + Sbjct: 12 QDDTVDSNIRPGTLAEYIGQPVVREQMEVFIEAARRRDEALDHTLIFGPPGLGKTTLANI 71 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A+E+G N RSTSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EEILYPAMEDFQ Sbjct: 72 IAKEMGGNLRSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDFQ 131 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L RFTL+AATTR GLLT+PL+DRFGI RL FY IEDL TIV Sbjct: 132 LDIMIGEGPAARSIKLDLPRFTLVAATTRAGLLTSPLRDRFGIVQRLEFYNIEDLTTIVS 191 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A+L + +T E A E+A RSRGTPRIA RLLRRVRD+AEV +T +IAD+AL L Sbjct: 192 RSARLMNVEMTAEGAVEVARRSRGTPRIANRLLRRVRDYAEVKSNGKVTGDIADSALDML 251 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 A+D+ G D LD RY+ M+ F GGP G+E I+A ++E R +ED+IEPY+IQQG++ RT Sbjct: 252 AVDRRGLDHLDRRYIEMVHARFDGGPAGVEAIAAAMAEDRGTLEDVIEPYLIQQGYVLRT 311 Query: 314 PRGRLLMPIAWQHL 327 RGR+L +A L Sbjct: 312 ARGRVLTQMAIDQL 325 >gi|188591241|ref|YP_001795841.1| holliday junction DNA helicase ruvb [Cupriavidus taiwanensis LMG 19424] gi|238692933|sp|B2AH72|RUVB_CUPTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|170938135|emb|CAP63121.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction resolvasome [Cupriavidus taiwanensis LMG 19424] Length = 354 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/321 (59%), Positives = 245/321 (76%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+A LRP+ L+E+ GQ + L +F+ AA+ R EALDHVL GPPGLGKTTLA Sbjct: 21 SQEEAFERALRPKLLDEYVGQEKVRGQLDIFMHAARKRREALDHVLLFGPPGLGKTTLAH 80 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GV+ R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 81 IIAREMGVSLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 141 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELARIV 200 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L + + A EIA R+RGTPRIA RLLRRVRD+AEV TITRE+ADAAL Sbjct: 201 TRSAQLLQARIDPQGALEIARRARGTPRIANRLLRRVRDYAEVKGDGTITREMADAALAM 260 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D++GFD +D + L + FGGGPVG++ ++A + E RD IED++EPY+IQQG++QR Sbjct: 261 LDVDRVGFDLMDRKLLEAVLHKFGGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGYLQR 320 Query: 313 TPRGRLLMPIAWQHLGIDIPH 333 TPRGR+ A++H G+ P Sbjct: 321 TPRGRVATAAAYRHFGLASPQ 341 >gi|302384290|ref|YP_003820113.1| Holliday junction DNA helicase RuvB [Brevundimonas subvibrioides ATCC 15264] gi|302194918|gb|ADL02490.1| Holliday junction DNA helicase RuvB [Brevundimonas subvibrioides ATCC 15264] Length = 342 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/333 (61%), Positives = 253/333 (75%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M + ++S + +A LRP+TL EF GQ A NLK+FI+AA+ R EALDHVL G Sbjct: 1 MSDDRIISPEPAPGEAYDRALRPQTLSEFVGQEAAKGNLKIFIDAARGRGEALDHVLLFG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLAQ+VARELGV FR+TSGP++AKAGDLAA+LTNLE RDVLFIDEIHRL+ V Sbjct: 61 PPGLGKTTLAQIVARELGVGFRATSGPILAKAGDLAAILTNLEPRDVLFIDEIHRLAPTV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMED LDL++GEGPSARSV+I+L+ FTL+ ATTR GLL PL+DRFGIP+RL Sbjct: 121 EEILYPAMEDHVLDLIIGEGPSARSVRIDLAPFTLVGATTRAGLLATPLRDRFGIPLRLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY +L ++ A+ G + DE A EIA RSRGTPR+AGRLLRRVRDFAE A I Sbjct: 181 FYTPAELVRVITGAARKMGAPINDEGAGEIASRSRGTPRVAGRLLRRVRDFAEAEGAAVI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 R +A AL RL ID+ G D D R+L + N+GGGPVG++T++A ++E RDA+ED+IE Sbjct: 241 NRIVAARALSRLEIDEAGLDANDRRFLKALIENYGGGPVGMDTLAAAIAEARDAVEDVIE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 PY++QQGFIQRTPRGR+ A+ HLG+ P + Sbjct: 301 PYLLQQGFIQRTPRGRMACAKAYAHLGLSEPPK 333 >gi|301050786|ref|ZP_07197643.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 185-1] gi|300297541|gb|EFJ53926.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 185-1] Length = 336 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/334 (58%), Positives = 251/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ +IA AL L +D GFD +D + L + F GPVG++ ++A + E R+ IED+ Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFCGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334 >gi|91793238|ref|YP_562889.1| Holliday junction DNA helicase B [Shewanella denitrificans OS217] gi|123060936|sp|Q12N10|RUVB_SHEDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|91715240|gb|ABE55166.1| Holliday junction DNA helicase RuvB [Shewanella denitrificans OS217] Length = 337 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 198/333 (59%), Positives = 254/333 (76%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+ V +D I +RP+ L+++TGQ + + LK+FI+AA R EALDH+L Sbjct: 1 MIEADRLIQPQVLAQDEHIDRAMRPKLLDDYTGQDDTRAQLKIFIQAAINRKEALDHMLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNL++ DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLDEGDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+ RFGIP+R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL TIV R AK+ LA+ A EIA RSRGTPRIA RLLRRVRD+AEV A Sbjct: 181 LEFYNVKDLCTIVTRSAKVMELAIDAGGAHEIAKRSRGTPRIANRLLRRVRDYAEVKFAG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 +T ++A AL L +D+ GFD LD + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 EVTEDVAQQALDMLDVDQEGFDYLDRKLLLSIIDKFMGGPVGLDNLAAAIGEDRETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EP++IQQGFIQRTPRGR++ P A+QH I P Sbjct: 301 LEPFLIQQGFIQRTPRGRIVTPRAYQHFNIITP 333 >gi|254000105|ref|YP_003052168.1| Holliday junction DNA helicase RuvB [Methylovorus sp. SIP3-4] gi|313202064|ref|YP_004040722.1| holliday junction DNA helicase ruvb [Methylovorus sp. MP688] gi|253986784|gb|ACT51641.1| Holliday junction DNA helicase RuvB [Methylovorus sp. SIP3-4] gi|312441380|gb|ADQ85486.1| Holliday junction DNA helicase RuvB [Methylovorus sp. MP688] Length = 345 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/319 (60%), Positives = 245/319 (76%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+A LRP+ L+E+ GQ +A L++FI AA+ R+EALDHVL GPPGLGKTTLA + Sbjct: 16 EEEALERALRPKVLDEYVGQEKARGQLEIFINAARGRSEALDHVLLFGPPGLGKTTLAHI 75 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED++ Sbjct: 76 IAREMGVNMRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPAMEDYR 135 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARSV+++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 136 LDIMIGEGPAARSVRLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTSEELARIVH 195 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L +++ + A EIA RSRGTPRIA RLLRRVRD+A+V +T IADAAL L Sbjct: 196 RSATLLDVSMQEAGALEIAKRSRGTPRIANRLLRRVRDYAQVKADGIVTSAIADAALQML 255 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +DK+GFD +D + L + FGGGPVG++ ++A + E RD IED++EPY+IQQG++ RT Sbjct: 256 DVDKLGFDVMDRKLLLAVLEKFGGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGYLMRT 315 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A+QH G+ P Sbjct: 316 PRGRIATQQAYQHFGLPAP 334 >gi|89094838|ref|ZP_01167771.1| Holliday junction DNA helicase RuvB [Oceanospirillum sp. MED92] gi|89080893|gb|EAR60132.1| Holliday junction DNA helicase RuvB [Oceanospirillum sp. MED92] Length = 337 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 190/318 (59%), Positives = 240/318 (75%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E+A +RP++LE++ GQ +++FI+AAK R+EALDH L GPPGLGKTTLA ++ Sbjct: 16 EEAQDRAIRPKSLEDYVGQPVVREQMEIFIQAAKMRSEALDHTLIFGPPGLGKTTLANII 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+G ++TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS VEE+LYPAMED+QL Sbjct: 76 ANEMGSEIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSPNVEEVLYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K+ L FTL+ ATTR GLLT+PL+DRFGI RL FY ++DL +IV R Sbjct: 136 DIMIGEGPAARSIKLELPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNVDDLTSIVSR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L+G + D+ A E+A RSRGTPRIA RLLRR RD+AEV I EIAD AL L Sbjct: 196 SANLSGTGIDDQGAREVAKRSRGTPRIANRLLRRARDYAEVKGDGVINNEIADKALNMLN 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD LD R L + F GGPVG+E+++A +SE RD IED++EPY+IQQGF+ RTP Sbjct: 256 VDHHGFDHLDRRMLLTMIEKFAGGPVGVESLAAAISEERDTIEDVLEPYLIQQGFVMRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR++ A++H GI P Sbjct: 316 RGRVVTDHAYKHFGIAKP 333 >gi|119774974|ref|YP_927714.1| Holliday junction DNA helicase RuvB [Shewanella amazonensis SB2B] gi|166231551|sp|A1S6N8|RUVB_SHEAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|119767474|gb|ABM00045.1| Holliday junction DNA helicase RuvB [Shewanella amazonensis SB2B] Length = 334 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/323 (60%), Positives = 247/323 (76%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 +++ QED +RP+ L+E+TGQ + + LKVFIEAAK R EALDH+L GPPGLGKTT Sbjct: 11 QDLGQEDVIDRAMRPKLLDEYTGQDDTRAQLKVFIEAAKKRGEALDHMLIYGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA +VA E+GVN +STSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEEILYPAM Sbjct: 71 LANIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSPVVEEILYPAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+ RFGIP+RL FY + DL Sbjct: 131 EDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRARFGIPLRLEFYNVRDLS 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 +IV R AK+ + + + A EIA RSRGTPRIA RLLRRVRDFAEV H I+R +A +A Sbjct: 191 SIVARSAKVMDVPMDEGGAEEIARRSRGTPRIANRLLRRVRDFAEVKHDGAISRAVAQSA 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D GFD +D + L I F GGPVG++ ++A + E R+ IED++EP++IQQGF Sbjct: 251 LDLLDVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGF 310 Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332 +QRTPRGR+ A+ H + P Sbjct: 311 VQRTPRGRIATARAYSHFDLIKP 333 >gi|82703832|ref|YP_413398.1| Holliday junction DNA helicase B [Nitrosospira multiformis ATCC 25196] gi|97190171|sp|Q2Y5G5|RUVB_NITMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|82411897|gb|ABB76006.1| Holliday junction DNA helicase subunit RuvB [Nitrosospira multiformis ATCC 25196] Length = 347 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/322 (59%), Positives = 247/322 (76%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 ++ +ED + +L RP+ L E+ GQ + L++FIEAA+ R EALDHVL GPPGLGKTTL Sbjct: 14 SLKEEDLERAL-RPKHLAEYIGQEKIRGQLQIFIEAARRRREALDHVLLFGPPGLGKTTL 72 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A +VA+E+GV R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+E Sbjct: 73 AHIVAKEMGVGLRQTSGPVLERPGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALE 132 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+QLD+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY +E+L Sbjct: 133 DYQLDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIISRLEFYSVEELTQ 192 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R A L G ++ + A EIA RSRGTPR+ RLLRRVRDFAEV I R++ADAAL Sbjct: 193 IVMRSAALLGADISPDGATEIARRSRGTPRVVNRLLRRVRDFAEVKAEGRINRQVADAAL 252 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L L +D +G D +D + L + FGGGPVG++ ++A +SE R IED++EPY+IQQG++ Sbjct: 253 LMLDVDAIGLDVMDRKLLLTVMEKFGGGPVGVDNLAAAISEERGTIEDVLEPYLIQQGYM 312 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 +RTPRGR+ IA+QH G+ +P Sbjct: 313 KRTPRGRMATSIAYQHFGLALP 334 >gi|311279239|ref|YP_003941470.1| Holliday junction DNA helicase RuvB [Enterobacter cloacae SCF1] gi|308748434|gb|ADO48186.1| Holliday junction DNA helicase RuvB [Enterobacter cloacae SCF1] Length = 336 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 197/335 (58%), Positives = 254/335 (75%), Gaps = 3/335 (0%) Query: 1 MMDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M++ + L+S + ++E AD ++ RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGSSTAEEVADRAI-RPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLL 59 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 60 IFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 119 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI Sbjct: 120 PVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 179 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL FY++ DL+ IV R A+ GL +++E A E+A RSRGTPRIA RLLRRVRDFAEV H Sbjct: 180 RLEFYQVPDLQHIVGRSARYMGLEMSEEGALEVARRSRGTPRIANRLLRRVRDFAEVRHD 239 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 TI+ IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED Sbjct: 240 GTISAHIAAEALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 300 VLEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPQ 334 >gi|83647601|ref|YP_436036.1| Holliday junction DNA helicase RuvB [Hahella chejuensis KCTC 2396] gi|97190097|sp|Q2SCL3|RUVB_HAHCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|83635644|gb|ABC31611.1| Holliday junction DNA helicase RuvB [Hahella chejuensis KCTC 2396] Length = 334 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/333 (57%), Positives = 250/333 (75%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S N + QED+ +RP+ LE++ GQ + +++FI AA+ R EALDH L Sbjct: 1 MIEADRIISPNATLQEDSQDRAIRPKRLEDYVGQPQVREQMEIFINAARGRQEALDHTLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+ V+ ++TSGPV+ KAGDLAALLTNLE +DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIANEMDVSIKTTSGPVLEKAGDLAALLTNLEPKDVLFIDEIHRLSA 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI R Sbjct: 121 AVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY +EDL+ IV R A L G+++ D A EIA RSRGTPRIA RLLRRVRD+AEV Sbjct: 181 LEFYSVEDLRHIVARSASLLGVSIDDGGAHEIARRSRGTPRIANRLLRRVRDYAEVKADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT E+AD AL L +D GFD +D R L + F GGPVG+E+++A + E + IED+ Sbjct: 241 AITNEVADKALNMLNVDLHGFDHMDRRLLLAVMEKFDGGPVGVESLAAAIGEEKGTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQGF+ RTPRGR+ A+ H G+ +P Sbjct: 301 VEPYLIQQGFLMRTPRGRVATQAAYNHFGLTMP 333 >gi|15604251|ref|NP_220767.1| Holliday junction DNA helicase RuvB [Rickettsia prowazekii str. Madrid E] gi|6226116|sp|Q9ZDE5|RUVB_RICPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|3860943|emb|CAA14843.1| HOLLIDAY JUNCTION DNA HELICASE RUVB (ruvB) [Rickettsia prowazekii] gi|292571995|gb|ADE29910.1| Holliday junction DNA helicase RuvB [Rickettsia prowazekii Rp22] Length = 342 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/329 (58%), Positives = 249/329 (75%), Gaps = 1/329 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS S+ D ++ + RP L+EF GQ + NL VFI+AAK+R E LDH LF GPPGL Sbjct: 3 NILSPEKSEHDQELPI-RPSYLKEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGL 61 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA++++ E+G NF+ST+GP I KA DLA++LTNLE DVLFIDEIHRL+ +VEE+L Sbjct: 62 GKTTLAKIISNEIGGNFKSTAGPAIIKAADLASILTNLEKNDVLFIDEIHRLNTLVEEVL 121 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF+LD+++GEG +AR VKI L +FTLI ATTR GL++NPL+DRFGIP+RLNFY Sbjct: 122 YSAMEDFELDIIIGEGSAARPVKITLPKFTLIGATTRFGLISNPLRDRFGIPMRLNFYNT 181 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LK ++ R +KL + +TD + EIA RSRGTPRIA RLLRR+RDFA V I +EI Sbjct: 182 EELKQVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAVVDGKSRIDKEI 241 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D L RL +D +G D D RYL IA N+ GGPVGIETI+A LSE RD +E+ IEPY+I Sbjct: 242 CDFGLKRLTVDSIGLDSNDYRYLKFIADNYHGGPVGIETIAAALSEQRDELEETIEPYLI 301 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 + G ++RTPRGR++ A++HL + IP++ Sbjct: 302 KIGLVKRTPRGRVITIAAFEHLKMPIPNK 330 >gi|51473577|ref|YP_067334.1| Holliday junction DNA helicase B [Rickettsia typhi str. Wilmington] gi|68715433|sp|Q68WZ0|RUVB_RICTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|51459889|gb|AAU03852.1| Holliday junction DNA helicase RuvB [Rickettsia typhi str. Wilmington] Length = 342 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/329 (58%), Positives = 249/329 (75%), Gaps = 1/329 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS S+ D ++ + RP L+EF GQ + NL VFI+AAK+R E LDH LF GPPGL Sbjct: 3 NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGL 61 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA++++ E+G NF+ST+GP I KA DLAA+LTNLE DVLFIDEIHRL+ +VEEIL Sbjct: 62 GKTTLAKIISNEIGGNFKSTAGPAIIKAADLAAILTNLEKNDVLFIDEIHRLNTLVEEIL 121 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF+LD+++GEG +ARSVKI L +FTLI ATTR G+L+N L+DRFGIP+RLNFY Sbjct: 122 YSAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRFGMLSNSLRDRFGIPMRLNFYNT 181 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LK ++ R +KL + +TD + EIA RSRGTPRIA RLLRR+RDFA V I +EI Sbjct: 182 EELKQVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAVVDGKLRIDKEI 241 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D L RL +D +G D D RYL IA N+ GGPVGIETI+A LSE RD +E+ IEPY+I Sbjct: 242 CDFGLKRLTVDSIGLDSNDYRYLKFIADNYHGGPVGIETIAAALSEQRDELEETIEPYLI 301 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 + G ++RTPRGR++ A++HL + IP++ Sbjct: 302 KIGLVKRTPRGRVITIAAFEHLKMPIPNK 330 >gi|91785165|ref|YP_560371.1| Holliday junction DNA helicase B [Burkholderia xenovorans LB400] gi|296157352|ref|ZP_06840188.1| Holliday junction DNA helicase RuvB [Burkholderia sp. Ch1-1] gi|123062566|sp|Q13UC0|RUVB_BURXL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|91689119|gb|ABE32319.1| Holliday junction DNA helicase RuvB [Burkholderia xenovorans LB400] gi|295892688|gb|EFG72470.1| Holliday junction DNA helicase RuvB [Burkholderia sp. Ch1-1] Length = 355 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/319 (60%), Positives = 241/319 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRPR LEE+ GQ + L++FIEAAK R+E+LDHVL GPPGLGKTTLA + Sbjct: 21 NEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 80 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 81 IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 140 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E L IV Sbjct: 141 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEQLARIVT 200 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + + A EIA R+RGTPRIA RLLRRVRDFAEV IT ++ADAAL L Sbjct: 201 RSASLLHAQIHPDGAFEIAKRARGTPRIANRLLRRVRDFAEVKADGNITAQVADAALKML 260 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT Sbjct: 261 DVDAVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 320 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ + ++H G+ P Sbjct: 321 PRGRVATLLTYRHFGLAAP 339 >gi|197119681|ref|YP_002140108.1| Holliday junction DNA helicase RuvB [Geobacter bemidjiensis Bem] gi|226698777|sp|B5EAH3|RUVB_GEOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|197089041|gb|ACH40312.1| Holliday junction DNA helicase RuvB [Geobacter bemidjiensis Bem] Length = 337 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/322 (60%), Positives = 248/322 (77%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+S + S++D + LRPR L ++ GQ +A NL +FI+AA+ R+EALDHVL GPPGLG Sbjct: 4 LISADKSEDDLLEASLRPRALSDYVGQEKAKGNLGLFIDAARGRSEALDHVLLYGPPGLG 63 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE DVLFIDEIHRLS +VEEILY Sbjct: 64 KTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEAHDVLFIDEIHRLSHVVEEILY 123 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+ RL FY E Sbjct: 124 PAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTHE 183 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L I+ R A++ G+A+ E A E+A RSRGTPRIA RLLRRVRDFA+V ITRE+A Sbjct: 184 ELAFIITRSARIFGMAIAPEGAMELARRSRGTPRIANRLLRRVRDFAQVRADGVITREVA 243 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L ID MGFD +D L I FGGGPVG++TI+A +SE D IED+ EP++IQ Sbjct: 244 DQALALLEIDDMGFDMMDRAILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLIQ 303 Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328 GF+ RTPRGR+ A++H G Sbjct: 304 NGFLNRTPRGRVATAAAYRHFG 325 >gi|294141121|ref|YP_003557099.1| Holliday junction DNA helicase RuvB [Shewanella violacea DSS12] gi|293327590|dbj|BAJ02321.1| Holliday junction DNA helicase RuvB [Shewanella violacea DSS12] Length = 339 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/312 (61%), Positives = 241/312 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E+TGQ + LKVFI+AA+ R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 26 MRPKLLDEYTGQDATRAQLKVFIQAAQNRGEALDHMLIYGPPGLGKTTLALIVANEMGVN 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG Sbjct: 86 IKSTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 145 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTLI ATTR G LT+PL+ RFGIP+RL FY ++DL TIV R AK+ L Sbjct: 146 PAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLRLEFYNVKDLSTIVTRSAKVLEL 205 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DE + E+A RSRGTPRIA RLLRRVRD+AEV H I + +AD AL L +D GFD Sbjct: 206 PIDDEGSLEVARRSRGTPRIANRLLRRVRDYAEVKHDGEINKRVADLALEMLDVDVEGFD 265 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+ Sbjct: 266 YMDRKLMLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRIATQ 325 Query: 322 IAWQHLGIDIPH 333 A+QH I P Sbjct: 326 RAYQHFNIIQPE 337 >gi|217973220|ref|YP_002357971.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS223] gi|304408863|ref|ZP_07390484.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS183] gi|307302866|ref|ZP_07582621.1| Holliday junction DNA helicase RuvB [Shewanella baltica BA175] gi|254767439|sp|B8EA75|RUVB_SHEB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|217498355|gb|ACK46548.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS223] gi|304352684|gb|EFM17081.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS183] gi|306913226|gb|EFN43648.1| Holliday junction DNA helicase RuvB [Shewanella baltica BA175] Length = 334 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+ + +D I +RP+ L+E+TGQ + + LKVFI+AAK R EALDH+L Sbjct: 1 MIEADRLIQPQIQAQDESIDRAMRPKMLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+ RFGIP+R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY I+DL TIV R A++ L + E A EIA RSRGTPRIA RLLRRVRD+A+V H Sbjct: 181 LEFYNIKDLSTIVTRSAQVMELDIDAEGAFEIARRSRGTPRIANRLLRRVRDYAQVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 +T+ +A+ AL L +D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AVTKFVAEHALDLLDVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EP++IQQGFIQRTPRGR+ A+QH + P Sbjct: 301 LEPFLIQQGFIQRTPRGRIATARAYQHFELIKPE 334 >gi|261343862|ref|ZP_05971507.1| holliday junction DNA helicase RuvB [Providencia rustigianii DSM 4541] gi|282568249|gb|EFB73784.1| holliday junction DNA helicase RuvB [Providencia rustigianii DSM 4541] Length = 336 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/331 (58%), Positives = 252/331 (76%), Gaps = 2/331 (0%) Query: 1 MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M++ + L++ V S+E+A +RP+ L E+ GQ + +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLITAEVLHSEEEAIDRAIRPKLLAEYIGQPQVKDQMEIFIQAAKMRGDALDHLL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA +VA ELGVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 IFGPPGLGKTTLAGIVANELGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL FY+++DL+ IV+R A+ GL +T+E A ++AMRSRGTPRI RLLRRVRDFA+V Sbjct: 181 RLEFYQVDDLQHIVKRSAQYMGLEITEEGALQVAMRSRGTPRITNRLLRRVRDFAQVKGD 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 TI +A+ AL L +D GFD LD + L I F GGPVG++ ++A + E R+ IED Sbjct: 241 GTIDEAMANKALDMLNVDAAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIED 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 ++EPY+IQQGFIQRTPRGR+ A+ H G+ Sbjct: 301 VLEPYLIQQGFIQRTPRGRMATAHAYSHFGL 331 >gi|307730948|ref|YP_003908172.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1003] gi|307585483|gb|ADN58881.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1003] Length = 354 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/319 (60%), Positives = 242/319 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRPR LEE+ GQ + L++FIEAA+ R+E+LDHVL GPPGLGKTTLA + Sbjct: 21 NEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAARRRSESLDHVLLFGPPGLGKTTLAHI 80 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 81 IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 140 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 141 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVT 200 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + + A EIA R+RGTPRIA RLLRRVRDFAEV IT ++ADAAL L Sbjct: 201 RSASLLNAQIHPDGAFEIARRARGTPRIANRLLRRVRDFAEVKADGNITAQVADAALSML 260 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT Sbjct: 261 DVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 320 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ + ++H G+ P Sbjct: 321 PRGRVATLLTYRHFGLAAP 339 >gi|153000823|ref|YP_001366504.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS185] gi|160875531|ref|YP_001554847.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS195] gi|166231553|sp|A6WNQ2|RUVB_SHEB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189046048|sp|A9L3H7|RUVB_SHEB9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|151365441|gb|ABS08441.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS185] gi|160861053|gb|ABX49587.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS195] gi|315267719|gb|ADT94572.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS678] Length = 334 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+ + +D I +RP+ L+E+TGQ + + LKVFI+AAK R EALDH+L Sbjct: 1 MIEADRLIQPQIQAQDESIDRAMRPKMLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+ RFGIP+R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY I+DL TIV R A++ L + E A EIA RSRGTPRIA RLLRRVRD+A+V H Sbjct: 181 LEFYNIKDLSTIVTRSAQVMELDIDAEGAFEIARRSRGTPRIANRLLRRVRDYAQVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 +T+ +A+ AL L +D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AVTKFVAEHALDLLDVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EP++IQQGFIQRTPRGR+ A+QH + P Sbjct: 301 LEPFLIQQGFIQRTPRGRIATVRAYQHFELIKPE 334 >gi|291280185|ref|YP_003497020.1| Holliday junction DNA helicase RuvB [Deferribacter desulfuricans SSM1] gi|290754887|dbj|BAI81264.1| Holliday junction DNA helicase RuvB [Deferribacter desulfuricans SSM1] Length = 343 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 190/316 (60%), Positives = 244/316 (77%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +ED +RP + +E+ GQ + NLK+F+EAAK R E LDH L GPPGLGKTTLA + Sbjct: 11 EEDIQGIHIRPNSFDEYVGQKKIVENLKIFVEAAKKRGEPLDHCLIYGPPGLGKTTLANI 70 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGV+ +STSGP I K GDLAA+LTNL + DVLFIDEIHRL VEEILYPAMEDF+ Sbjct: 71 IANELGVSIKSTSGPTIEKPGDLAAILTNLSEGDVLFIDEIHRLHTSVEEILYPAMEDFK 130 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G+GP+AR++KI+L +FTLI ATTR GLLT+PL+DRFG+ RL+FY++++LK IV Sbjct: 131 LDIIIGQGPAARTIKIDLPKFTLIGATTRAGLLTSPLRDRFGMIFRLDFYDVDELKQIVL 190 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 RGAK+ G+ + D AA IA R RGTPRIA R+LRRVRDFAEV + +T+EIAD L RL Sbjct: 191 RGAKVLGVEIDDSAAMVIASRCRGTPRIAHRILRRVRDFAEVMNDGVVTKEIADFGLNRL 250 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 ID G D D +L I + GGPVGIET+SA LSE +D +ED+IEPY+I +GFI++T Sbjct: 251 EIDSAGLDINDRNFLLAIIEKYNGGPVGIETLSATLSEEKDTLEDVIEPYLIYKGFIKKT 310 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR++ P+A++HL I Sbjct: 311 PRGRVVTPLAYEHLNI 326 >gi|294338684|emb|CAZ87015.1| Holliday junction ATP-dependent DNA helicase ruvB [Thiomonas sp. 3As] Length = 352 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/313 (61%), Positives = 239/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+++ GQV L +FI AA+ R EALDHVL GPPGLGKTTLA +VARE+GVN Sbjct: 32 LRPQQLDDYVGQVRVREQLDIFIGAARKREEALDHVLLFGPPGLGKTTLAHIVAREMGVN 91 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 RSTSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q+D+++GEG Sbjct: 92 LRSTSGPVLERAGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDYQIDILIGEG 151 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV R AKL G Sbjct: 152 PGARSVKIDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELTRIVLRSAKLLGA 211 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRD+A++ A I+ E+ADAAL L +D +GFD Sbjct: 212 VIDPDGAAEIARRARGTPRIANRLLRRVRDYADMKAAGRISAEVADAALRMLDVDPLGFD 271 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + F GGPVG++ ++A + E RD IED+IEPY+IQQG++QRTPRGR+ Sbjct: 272 VMDRKLLEAVVHRFDGGPVGLDNLAAAIGEERDTIEDVIEPYLIQQGYLQRTPRGRIATA 331 Query: 322 IAWQHLGIDIPHR 334 + HLG+ P R Sbjct: 332 ATYAHLGLAAPQR 344 >gi|323527311|ref|YP_004229464.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1001] gi|323384313|gb|ADX56404.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1001] Length = 392 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/319 (60%), Positives = 242/319 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRPR LEE+ GQ + L++FIEAAK R+E+LDHVL GPPGLGKTTLA + Sbjct: 59 NEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 118 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 119 IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 178 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 179 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVT 238 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + + A EIA R+RGTPRIA RLLRRVRD+AEV IT ++ADAAL L Sbjct: 239 RSASLLNAQIHPDGAFEIARRARGTPRIANRLLRRVRDYAEVKADGNITAQVADAALRML 298 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT Sbjct: 299 DVDAVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 358 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ + ++H G+ P Sbjct: 359 PRGRVATLLTYRHFGLAAP 377 >gi|56477679|ref|YP_159268.1| Holliday junction DNA helicase RuvB [Aromatoleum aromaticum EbN1] gi|81821098|sp|Q5P2U7|RUVB_AZOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|56313722|emb|CAI08367.1| Holliday junction DNA helicase [Aromatoleum aromaticum EbN1] Length = 353 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/321 (60%), Positives = 239/321 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QED LRP+ L E+ GQ + L++FI+AAK R EALDHVL GPPGLGKTTLA + Sbjct: 21 QEDVVERALRPKRLAEYVGQAKIREQLEIFIQAAKNRHEALDHVLLFGPPGLGKTTLAHI 80 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+EDFQ Sbjct: 81 VAAEMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDFQ 140 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY +L IV Sbjct: 141 IDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPHELAYIVG 200 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L +A+ D A EIA R+RGTPRIA RLLRRVRD+A+V IT +ADAALL L Sbjct: 201 RSAGLLDVAIDDAGAVEIARRARGTPRIANRLLRRVRDYAQVKADGDITAPVADAALLML 260 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +G D +D + L + FGGGPVG++ ++A + E D IED++EPY+IQQG++QRT Sbjct: 261 DVDHLGLDLMDRKLLGAMLEKFGGGPVGLDNLAAAIGESSDTIEDVLEPYLIQQGYLQRT 320 Query: 314 PRGRLLMPIAWQHLGIDIPHR 334 PRGR+ WQH G+ P R Sbjct: 321 PRGRIASASIWQHFGLAFPRR 341 >gi|16760844|ref|NP_456461.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765236|ref|NP_460851.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141464|ref|NP_804806.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413187|ref|YP_150262.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161613552|ref|YP_001587517.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994195|ref|ZP_02575287.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168238524|ref|ZP_02663582.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168259833|ref|ZP_02681806.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194735485|ref|YP_002114929.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247607|ref|YP_002146129.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262734|ref|ZP_03162808.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362113|ref|YP_002141750.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242097|ref|YP_002215192.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390795|ref|ZP_03217406.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213163230|ref|ZP_03348940.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426406|ref|ZP_03359156.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649640|ref|ZP_03379693.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|54039578|sp|P66756|RUVB_SALTI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|54042206|sp|P66755|RUVB_SALTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|81821475|sp|Q5PIA7|RUVB_SALPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189046046|sp|A9MUX4|RUVB_SALPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226698783|sp|B5F3J7|RUVB_SALA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226698784|sp|B5FSN8|RUVB_SALDC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238689768|sp|B4TYR7|RUVB_SALSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238690746|sp|B5BH61|RUVB_SALPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|25299833|pir||AB0743 Holliday junction DNA helicase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420430|gb|AAL20810.1| Holliday junction helicase, subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503141|emb|CAD05645.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Typhi] gi|29137091|gb|AAO68655.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127444|gb|AAV76950.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161362916|gb|ABX66684.1| hypothetical protein SPAB_01272 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194710987|gb|ACF90208.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093590|emb|CAR59053.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211310|gb|ACH48707.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240989|gb|EDY23609.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288639|gb|EDY28014.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936613|gb|ACH73946.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603240|gb|EDZ01786.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205327888|gb|EDZ14652.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205350900|gb|EDZ37531.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267993876|gb|ACY88761.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312912888|dbj|BAJ36862.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224537|gb|EFX49600.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130178|gb|ADX17608.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326622941|gb|EGE29286.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627452|gb|EGE33795.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988788|gb|AEF07771.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 336 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/333 (58%), Positives = 250/333 (75%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ EIA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 333 >gi|62180472|ref|YP_216889.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167552472|ref|ZP_02346225.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168234045|ref|ZP_02659103.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168241522|ref|ZP_02666454.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168462575|ref|ZP_02696506.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820717|ref|ZP_02832717.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443149|ref|YP_002041159.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451535|ref|YP_002045947.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468616|ref|ZP_03074600.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|224583601|ref|YP_002637399.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912046|ref|ZP_04655883.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|81309669|sp|Q57NA3|RUVB_SALCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238693526|sp|B4SVE4|RUVB_SALNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238693636|sp|B4T7Z2|RUVB_SALHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767438|sp|C0Q2F5|RUVB_SALPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|62128105|gb|AAX65808.1| Holliday junction helicase, subunit B [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194401812|gb|ACF62034.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409839|gb|ACF70058.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194454980|gb|EDX43819.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634281|gb|EDX52633.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205322862|gb|EDZ10701.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331956|gb|EDZ18720.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339368|gb|EDZ26132.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342660|gb|EDZ29424.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224468128|gb|ACN45958.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320085489|emb|CBY95270.1| Holliday junction ATP-dependent DNA helicase ruvB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322714947|gb|EFZ06518.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 336 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/333 (58%), Positives = 250/333 (75%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ EIA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 333 >gi|157375171|ref|YP_001473771.1| Holliday junction DNA helicase B [Shewanella sediminis HAW-EB3] gi|189046051|sp|A8FUX0|RUVB_SHESH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157317545|gb|ABV36643.1| Holliday junction DNA helicase RuvB [Shewanella sediminis HAW-EB3] Length = 338 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/313 (61%), Positives = 241/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E+TGQ + + LK+FI+AA+ R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 26 MRPKLLDEYTGQDDTRAQLKIFIKAAQNRGEALDHMLIYGPPGLGKTTLAMIVANEMGVN 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG Sbjct: 86 IKSTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHRLSSVVEEILYPAMEDYQLDIMIGEG 145 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTLI ATTR G LT+PL+ RFGIP+RL FY +DL +IV R A + L Sbjct: 146 PAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLRLEFYNTKDLSSIVSRSANVLEL 205 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DE A E+A RSRGTPRIA RLLRRVRDFAEV H I + +AD AL L ID GFD Sbjct: 206 PIDDEGAIELAKRSRGTPRIANRLLRRVRDFAEVKHDGEINKAVADLALDMLDIDSEGFD 265 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+ Sbjct: 266 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRIATD 325 Query: 322 IAWQHLGIDIPHR 334 A++H I P + Sbjct: 326 RAYRHFDIIQPEK 338 >gi|161502990|ref|YP_001570102.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189046045|sp|A9MND7|RUVB_SALAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|160864337|gb|ABX20960.1| hypothetical protein SARI_01052 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 336 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/322 (59%), Positives = 247/322 (76%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +++E AD ++ RP+ L E+ GQ + S +++FI+AAK R +ALDH+L GPPGLGKTTL Sbjct: 13 TIAEEVADRAI-RPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTL 71 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAME Sbjct: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL FY++ DL+ Sbjct: 132 DYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQH 191 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H I+ EIA AL Sbjct: 192 IVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQAL 251 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L +D GFD +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+ Sbjct: 252 DMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFL 311 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 QRTPRGR+ AW H GI P Sbjct: 312 QRTPRGRMATVRAWNHFGITPP 333 >gi|197334291|ref|YP_002155715.1| holliday junction DNA helicase RuvB [Vibrio fischeri MJ11] gi|226698788|sp|B5FCQ2|RUVB_VIBFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|197315781|gb|ACH65228.1| holliday junction DNA helicase RuvB [Vibrio fischeri MJ11] Length = 337 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/321 (59%), Positives = 245/321 (76%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +ED +RP+ L+++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA + Sbjct: 17 EEDVIDRAIRPKKLDDYQGQDHVRGQMEIFIKAAQMREEALDHLLIFGPPGLGKTTLANI 76 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ D+LFIDEIHRLS +VEE+LYPAMED+Q Sbjct: 77 VANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDILFIDEIHRLSPMVEEVLYPAMEDYQ 136 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y++EDL+ IVQ Sbjct: 137 LDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVEDLQHIVQ 196 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L++ E A E+A R+RGTPRIA RLLRRVRD+AEV I+ +IAD AL L Sbjct: 197 RSADCLNLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVMSDGNISSDIADKALNML 256 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L I F GGPVG++ I+A + E RD IED+IEPY+IQQG++QRT Sbjct: 257 DVDVRGFDYMDRKLLLAIMEKFDGGPVGLDNIAAAIGEERDTIEDVIEPYLIQQGYLQRT 316 Query: 314 PRGRLLMPIAWQHLGIDIPHR 334 PRGR++ A+ H GID P + Sbjct: 317 PRGRIVSDRAYLHFGIDKPDK 337 >gi|126174264|ref|YP_001050413.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS155] gi|166231552|sp|A3D481|RUVB_SHEB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|125997469|gb|ABN61544.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS155] Length = 334 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/334 (58%), Positives = 251/334 (75%), Gaps = 1/334 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+ + +D I +RP+ L+E+TGQ + LKVFI+AAK R EALDH+L Sbjct: 1 MIEADRLIQPQIQAQDESIDRAMRPKMLDEYTGQDHTRAQLKVFIQAAKNRNEALDHMLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+ RFGIP+R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY I+DL TIV R A++ L + E A EIA RSRGTPRIA RLLRRVRD+A+V H Sbjct: 181 LEFYNIKDLSTIVTRSAQVMELDIDAEGAFEIARRSRGTPRIANRLLRRVRDYAQVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 +T+ +A+ AL L +D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AVTKFVAEHALDLLDVDSEGFDYMDRKLLLAIIDKFIGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EP++IQQGFIQRTPRGR+ A+QH + P Sbjct: 301 LEPFLIQQGFIQRTPRGRIATARAYQHFELIKPE 334 >gi|322616894|gb|EFY13802.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618132|gb|EFY15024.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625803|gb|EFY22622.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626255|gb|EFY23065.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632669|gb|EFY29414.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639013|gb|EFY35706.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640453|gb|EFY37106.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644218|gb|EFY40763.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649541|gb|EFY45973.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655448|gb|EFY51756.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660227|gb|EFY56465.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662908|gb|EFY59115.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668093|gb|EFY64252.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674147|gb|EFY70241.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675499|gb|EFY71573.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683087|gb|EFY79103.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686781|gb|EFY82759.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195328|gb|EFZ80508.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199220|gb|EFZ84315.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323210662|gb|EFZ95540.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217460|gb|EGA02179.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323224439|gb|EGA08727.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323235924|gb|EGA20003.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240494|gb|EGA24537.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245386|gb|EGA29386.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323260267|gb|EGA43888.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266858|gb|EGA50344.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269064|gb|EGA52520.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 336 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/333 (58%), Positives = 250/333 (75%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ EIA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 333 >gi|30248237|ref|NP_840307.1| Holliday junction DNA helicase B [Nitrosomonas europaea ATCC 19718] gi|44888451|sp|Q82XP4|RUVB_NITEU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|30180122|emb|CAD84124.1| ruvB; holliday junction DNA helicase protein [Nitrosomonas europaea ATCC 19718] Length = 346 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 198/322 (61%), Positives = 242/322 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+ LRP L+++ GQ + LK+FIEAA+ R EALDHVL GPPGLGKTTLA Sbjct: 15 SQEEVIERALRPVQLDDYVGQEKIREQLKIFIEAARLRQEALDHVLLFGPPGLGKTTLAH 74 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+ Sbjct: 75 IIAREMGVNLRQTSGPVLERAGDLAALLTNLETNDVLFIDEIHRLSPVVEEILYPAMEDY 134 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEG +ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L IV Sbjct: 135 QLDIMIGEGAAARSVKIDLPSFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTADELGKIV 194 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L + VT + A EIA RSRGTPRIA RLLRRVRDFAEV I R +ADAAL Sbjct: 195 TRSAGLLNVDVTADGAREIACRSRGTPRIANRLLRRVRDFAEVRANGRIDRPVADAALQM 254 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D LD + L + FGGGPVG++ ++A ++E RD IE+++EPY+IQQGF+QR Sbjct: 255 LDVDATGLDVLDRKLLLAVLEKFGGGPVGVDNLAAAINEERDTIEEVLEPYLIQQGFLQR 314 Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334 TPRGR+ +A+QH I H+ Sbjct: 315 TPRGRMATTMAYQHFDIIPSHQ 336 >gi|148977428|ref|ZP_01814028.1| Holliday junction DNA helicase B [Vibrionales bacterium SWAT-3] gi|145963380|gb|EDK28645.1| Holliday junction DNA helicase B [Vibrionales bacterium SWAT-3] Length = 338 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/320 (59%), Positives = 243/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 ED +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA Sbjct: 16 KDEDVIDRAIRPKALADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLAN 75 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+ Sbjct: 76 IVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPVVEEVLYPAMEDY 135 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y++EDL+ IV Sbjct: 136 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVEDLQNIV 195 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I E+AD+AL Sbjct: 196 QRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICPEVADSALNM 255 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D GFD +D + L I FGGGPVGI+ ++A + E +D IED++EPY+IQQG++QR Sbjct: 256 LDVDAKGFDYMDRKLLLAIMEKFGGGPVGIDNMAAAIGEEKDTIEDVLEPYLIQQGYLQR 315 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ A+ H GID+P Sbjct: 316 TPRGRIATDRAYLHFGIDLP 335 >gi|94309368|ref|YP_582578.1| Holliday junction DNA helicase RuvB [Cupriavidus metallidurans CH34] gi|123260400|sp|Q1LRB7|RUVB_RALME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|93353220|gb|ABF07309.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Cupriavidus metallidurans CH34] Length = 355 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 242/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+A LRP+ L+E+ GQ + L +F+ AA+ R EALDHVL GPPGLGKTTLA Sbjct: 25 TQEEAFERALRPKLLDEYVGQEKVRGQLDIFMHAARKRREALDHVLLFGPPGLGKTTLAH 84 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 85 IIAREMGVNLRQTSGPVLERPGDLAALLTNLEAHDVLFIDEIHRLSPVVEEILYPALEDY 144 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L IV Sbjct: 145 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPDELARIV 204 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L A+ A EIA R+RGTPRIA RLLRRVRDFAEV TITRE+ADAAL Sbjct: 205 ARSALLLNAAIDPAGALEIARRARGTPRIANRLLRRVRDFAEVKSDGTITRELADAALEM 264 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L + F GGPVG++ ++A + E RD IED++EPYMIQQG++QR Sbjct: 265 LDVDSVGFDLMDRKLLEAVLHKFDGGPVGVDNLAAAIGEARDTIEDVLEPYMIQQGYLQR 324 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ A++H G+ P Sbjct: 325 TPRGRMATAAAYRHFGLASP 344 >gi|114776333|ref|ZP_01451378.1| holliday junction DNA helicase RuvB [Mariprofundus ferrooxydans PV-1] gi|114553163|gb|EAU55561.1| holliday junction DNA helicase RuvB [Mariprofundus ferrooxydans PV-1] Length = 346 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/330 (57%), Positives = 252/330 (76%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 ++E LL ++ D + LRP+ L+E+ GQ + +NL V+I+AA+AR E+LDHVL GP Sbjct: 4 EQERLLGGEINASDNWDAALRPKKLDEYVGQEKIRANLGVYIKAARARNESLDHVLLYGP 63 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A E+GV+ R+TSGPVI K GDLAA+LTN+E+ DVLFIDEIHRLS VE Sbjct: 64 PGLGKTTLANIIAMEMGVHIRATSGPVIEKPGDLAAMLTNIEEGDVLFIDEIHRLSPQVE 123 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 EILYPAMEDFQLDL++G+GP+ARS+K+++ RFTL+ ATTR GLLTNPL+DRFG+ RL F Sbjct: 124 EILYPAMEDFQLDLIIGQGPAARSIKMDIPRFTLVGATTRAGLLTNPLRDRFGVIERLEF 183 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y +L I +R A+L + A EIA RSRGTPRIA RLLRRVRDFAEV H+ IT Sbjct: 184 YSHPELTLIAERSARLLNIQTDHGGALEIARRSRGTPRIANRLLRRVRDFAEVEHSGVIT 243 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 ++AD++L RL +D +G D D R L ++ +GGGPVG++T++A +SE RD IED++EP Sbjct: 244 GKVADSSLERLEVDHLGLDHQDRRLLAVMIDKYGGGPVGLDTLAASISEERDTIEDVLEP 303 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Y++Q+G I RTPRGR P+A+ H+ ++P Sbjct: 304 YLLQEGLIARTPRGRTATPLAYAHMNRELP 333 >gi|297539681|ref|YP_003675450.1| Holliday junction DNA helicase RuvB [Methylotenera sp. 301] gi|297259028|gb|ADI30873.1| Holliday junction DNA helicase RuvB [Methylotenera sp. 301] Length = 344 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/319 (60%), Positives = 246/319 (77%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+A LRP+ L+E+ GQ +A S L++FI AA+ R+EALDHVL GPPGLGKTTLA + Sbjct: 16 REEALERALRPKLLDEYVGQEKARSQLEIFINAARGRSEALDHVLLFGPPGLGKTTLAHI 75 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A+E+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED++ Sbjct: 76 IAKEMGVNMRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPAMEDYR 135 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARSV+++L FTLI ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 136 LDIMIGEGPAARSVRLDLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYTSEELARIVH 195 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + + D + EIA RSRGTPRIA RLLRRVRD+A+V ++ EIADAAL L Sbjct: 196 RSAGLLEVEMADTGSLEIARRSRGTPRIANRLLRRVRDYAQVKANGIVSSEIADAALKML 255 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +DK+GFD +D + L + FGGGPVG++ ++A + E RD IED++EPY+IQQG++ RT Sbjct: 256 DVDKLGFDVMDRKLLLAVIEKFGGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGYLMRT 315 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A+QH + +P Sbjct: 316 PRGRIATLQAYQHFELPMP 334 >gi|291612985|ref|YP_003523142.1| Holliday junction DNA helicase RuvB [Sideroxydans lithotrophicus ES-1] gi|291583097|gb|ADE10755.1| Holliday junction DNA helicase RuvB [Sideroxydans lithotrophicus ES-1] Length = 351 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/319 (60%), Positives = 242/319 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QE+A LRP+ L+E+ GQ + L++FI+AAK R E LDHVL GPPGLGKTTLAQ+ Sbjct: 22 QEEALDRALRPKQLDEYVGQEKIRGQLEIFIQAAKKRKEPLDHVLLFGPPGLGKTTLAQI 81 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 82 IAREMGVNIRHTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDYQ 141 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L+ IV Sbjct: 142 IDIMIGEGPGARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELQRIVT 201 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R + L L ++ + A EIA RSRGTPRIA RLLRRVRD+A+V TRE+ADAAL L Sbjct: 202 RSSGLLELPISPDGALEIARRSRGTPRIANRLLRRVRDYADVRAEGNATREVADAALTML 261 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D G D +D + L + F GGPVG++ ++A + E RD IED++EPY+IQQG++QRT Sbjct: 262 DVDSRGLDVMDRKLLQTVIEKFMGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 321 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A+QH G+ P Sbjct: 322 PRGRMATANAYQHFGLIQP 340 >gi|127513003|ref|YP_001094200.1| Holliday junction DNA helicase B [Shewanella loihica PV-4] gi|166231554|sp|A3QEP3|RUVB_SHELP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|126638298|gb|ABO23941.1| Holliday junction DNA helicase RuvB [Shewanella loihica PV-4] Length = 337 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/312 (61%), Positives = 241/312 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E+TGQ + + LKVFIEAA+ R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 26 MRPKLLDEYTGQDDTRAQLKVFIEAAQKRGEALDHMLIYGPPGLGKTTLAMIVANEMGVN 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG Sbjct: 86 IKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 145 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K+ L FTLI ATTR G LT+PL+ RFGIP+RL FY ++DL +IV R AK+ L Sbjct: 146 PAARSIKLELPPFTLIGATTRAGALTSPLRARFGIPLRLEFYNVKDLSSIVTRSAKVLEL 205 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A E+A RSRGTPRIA RLLRRVRD+AEV H + + +A++AL L +D GFD Sbjct: 206 PIDQEGAVEVARRSRGTPRIANRLLRRVRDYAEVKHDGEVNKVVAESALDMLDVDVEGFD 265 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+ Sbjct: 266 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRIATA 325 Query: 322 IAWQHLGIDIPH 333 A+QH + P Sbjct: 326 RAYQHFNLIQPE 337 >gi|326566834|gb|EGE16973.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis 103P14B1] gi|326569840|gb|EGE19890.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis BC8] gi|326571554|gb|EGE21569.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis BC7] gi|326575166|gb|EGE25094.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis CO72] gi|326576748|gb|EGE26655.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis 101P30B1] gi|326577576|gb|EGE27453.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis O35E] Length = 329 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/319 (59%), Positives = 247/319 (77%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+ N ++D +RP +L+E+ GQ + +KVFI AA+AR EALDH L GPPGLG Sbjct: 6 LIDPNPKKDDTADRAIRPSSLDEYIGQPKVREQMKVFIPAARARGEALDHTLIFGPPGLG 65 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A+E+G N RSTSGPV+ +AGDLAA+LTNLE DVLFIDEIHRLS ++EEILY Sbjct: 66 KTTLANIIAKEMGGNLRSTSGPVLERAGDLAAILTNLEAGDVLFIDEIHRLSPVIEEILY 125 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLD+M+GEGP+ARS+K++L FTL+AATTR GLL+ PL DRFGI RL FY +E Sbjct: 126 PAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLSAPLFDRFGIVQRLEFYNVE 185 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 DL TIV+R A+L G+A+ D A E+A RSRGTPRIA RLLRRVRD+AE+ T +IA Sbjct: 186 DLTTIVKRSARLLGVAMDDGGALEVAHRSRGTPRIANRLLRRVRDYAEIKGDGVATADIA 245 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 AAL LA+DK G DQLD RYL+++++ F GGP G+E ++A ++E R +ED+IEPY++Q Sbjct: 246 SAALDMLAVDKQGLDQLDRRYLSVLSQRFHGGPAGVEALAAAMAEDRGTLEDVIEPYLLQ 305 Query: 307 QGFIQRTPRGRLLMPIAWQ 325 QG+IQRT +GR++ +Q Sbjct: 306 QGYIQRTSKGRIISDKVFQ 324 >gi|296134720|ref|YP_003641962.1| Holliday junction DNA helicase RuvB [Thiomonas intermedia K12] gi|295794842|gb|ADG29632.1| Holliday junction DNA helicase RuvB [Thiomonas intermedia K12] Length = 352 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/313 (61%), Positives = 238/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+++ GQ L +FI AA+ R EALDHVL GPPGLGKTTLA +VARE+GVN Sbjct: 32 LRPQQLDDYVGQARVREQLDIFIGAARKREEALDHVLLFGPPGLGKTTLAHIVAREMGVN 91 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 RSTSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q+D+++GEG Sbjct: 92 LRSTSGPVLERAGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDYQIDILIGEG 151 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV R AKL G Sbjct: 152 PGARSVKIDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELTRIVLRSAKLLGA 211 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRD+A++ A I+ E+ADAAL L +D +GFD Sbjct: 212 VIDPDGAVEIARRARGTPRIANRLLRRVRDYADMKAAGRISAEVADAALRMLDVDSLGFD 271 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + F GGPVG++ ++A + E RD IED+IEPY+IQQG++QRTPRGR+ Sbjct: 272 VMDRKLLEAVVHRFDGGPVGLDNLAAAIGEERDTIEDVIEPYLIQQGYLQRTPRGRIATA 331 Query: 322 IAWQHLGIDIPHR 334 + HLG+ P R Sbjct: 332 ATYAHLGLAAPQR 344 >gi|260912904|ref|ZP_05919389.1| crossover junction endoribonuclease subunit B [Pasteurella dagmatis ATCC 43325] gi|260632894|gb|EEX51060.1| crossover junction endoribonuclease subunit B [Pasteurella dagmatis ATCC 43325] Length = 336 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 189/330 (57%), Positives = 248/330 (75%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S V +D I +RP+ L ++ GQ + C + +FI+AAK R +ALDH+L Sbjct: 1 MIEADRIISATVKLDDEVIDRAIRPKLLSDYVGQPQVCEQMDIFIQAAKLRQDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL +IV R A L + D A+ EIA RSRGTPRIA RLLRRVRDFA+V + Sbjct: 181 LEFYSVDDLTSIVTRSANCLNLIIADNASYEIARRSRGTPRIANRLLRRVRDFADVRNGG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ +IA AAL+ L +D GFD LD + L+ + F GGPVG++ ++A + E RD IED+ Sbjct: 241 VISEDIAKAALMMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGF+QRTPRGR+ ++H G+ Sbjct: 301 LEPYLIQQGFLQRTPRGRMATSRTYRHFGV 330 >gi|209517514|ref|ZP_03266354.1| Holliday junction DNA helicase RuvB [Burkholderia sp. H160] gi|209502047|gb|EEA02063.1| Holliday junction DNA helicase RuvB [Burkholderia sp. H160] Length = 353 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/319 (60%), Positives = 242/319 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRPR L+E+ GQ + L++FIEAAK R+E+LDHVL GPPGLGKTTLA + Sbjct: 21 NEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 80 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 81 IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 140 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 141 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVT 200 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + + A EIA R+RGTPRIA RLLRRVRDFAEV IT ++ADAAL L Sbjct: 201 RSASLLRAQIHPDGALEIARRARGTPRIANRLLRRVRDFAEVKADGNITAQVADAALRML 260 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT Sbjct: 261 DVDAVGFDLMDRKLLEAILYKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 320 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ + ++H G+ P Sbjct: 321 PRGRVATLLTYRHFGLAAP 339 >gi|330991873|ref|ZP_08315822.1| Holliday junction ATP-dependent DNA helicase ruvB [Gluconacetobacter sp. SXCC-1] gi|329760894|gb|EGG77389.1| Holliday junction ATP-dependent DNA helicase ruvB [Gluconacetobacter sp. SXCC-1] Length = 353 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/324 (63%), Positives = 250/324 (77%), Gaps = 2/324 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED LRP+TL++FTGQ + NL +FI AA+ R +ALDHVL GPPGLGKTTLAQ Sbjct: 14 GEEDGGEGTLRPQTLDDFTGQKASRENLAIFIAAARQRGDALDHVLLHGPPGLGKTTLAQ 73 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL +EE+LYPAMEDF Sbjct: 74 IVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLHPAIEEVLYPAMEDF 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLDL++GEGP+ARSV+I+L+ FTL+AATTR GLL PL+DRFGIP+RL FY E+L IV Sbjct: 134 QLDLIIGEGPAARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPEELCQIV 193 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA--KTITREIADAAL 250 RGA+ +T E A EIA RSRGTPRIAGRLLRRVRDFA VA A + R +ADAAL Sbjct: 194 TRGARKLEFDLTPEGAEEIARRSRGTPRIAGRLLRRVRDFAAVARAGRGPVDRALADAAL 253 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 RL +D MG D +D RYL IA GGPVG+ET++A L+E RD +ED+IEPY+IQ+G + Sbjct: 254 SRLEVDSMGLDGMDRRYLRRIAEYHHGGPVGVETLAAALAEARDTLEDVIEPYLIQEGLV 313 Query: 311 QRTPRGRLLMPIAWQHLGIDIPHR 334 RT RGR+L W+HLG+ P R Sbjct: 314 LRTSRGRMLGERGWRHLGLQPPAR 337 >gi|218513560|ref|ZP_03510400.1| Holliday junction DNA helicase RuvB [Rhizobium etli 8C-3] Length = 263 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/249 (77%), Positives = 222/249 (89%) Query: 85 TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144 TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+ VEEILYPAMEDFQLDL++GEGP+A Sbjct: 1 TSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDFQLDLIIGEGPAA 60 Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204 RSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E+L+ IV+RGA+L L +T Sbjct: 61 RSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVEELELIVRRGARLMNLPMT 120 Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264 +E A EIA R+RGTPRIAG +RRVRDFAEVA A+ +TREIAD AL RL +D +GFDQLD Sbjct: 121 EEGAREIARRARGTPRIAGGQMRRVRDFAEVARAEAVTREIADEALTRLLVDNVGFDQLD 180 Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324 RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQQGFIQRTPRGR+L IAW Sbjct: 181 KRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQQGFIQRTPRGRVLTAIAW 240 Query: 325 QHLGIDIPH 333 +HLG+ P Sbjct: 241 KHLGMQPPK 249 >gi|192359396|ref|YP_001981527.1| Holliday junction DNA helicase RuvB [Cellvibrio japonicus Ueda107] gi|238692419|sp|B3PB59|RUVB_CELJU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|190685561|gb|ACE83239.1| Holliday junction DNA helicase RuvB [Cellvibrio japonicus Ueda107] Length = 346 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/321 (60%), Positives = 243/321 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +ED +RP+ L ++ GQ +++FI AAK R EALDH L GPPGLGKTTLA + Sbjct: 15 REDQLDRAVRPKVLADYVGQPAVREQMEIFICAAKKRREALDHTLVFGPPGLGKTTLANI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+GV+ +STSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEEILYPAMEDFQ Sbjct: 75 IANEMGVSLKSTSGPVLEKAGDLAAMLTNLEAGDVLFIDEIHRLSPVVEEILYPAMEDFQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY ++DL IV Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNVKDLTHIVA 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L G+++ + A EIA RSRGTPRIA RLLRRVRDFAEV IT E+AD AL L Sbjct: 195 RSAALLGVSMEELGAAEIAKRSRGTPRIANRLLRRVRDFAEVKGDGRITSELADKALNML 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D+ GFD +D R L + NF GGPVG+E+++A +SE R IED+IEPY+IQQGF+ RT Sbjct: 255 NVDERGFDHMDRRLLLAMINNFDGGPVGVESLAAAISEDRGTIEDVIEPYLIQQGFMART 314 Query: 314 PRGRLLMPIAWQHLGIDIPHR 334 PRGR+L A+ H G+ +P R Sbjct: 315 PRGRVLTTNAYLHFGLSMPKR 335 >gi|212711935|ref|ZP_03320063.1| hypothetical protein PROVALCAL_03010 [Providencia alcalifaciens DSM 30120] gi|212685457|gb|EEB44985.1| hypothetical protein PROVALCAL_03010 [Providencia alcalifaciens DSM 30120] Length = 336 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/331 (58%), Positives = 252/331 (76%), Gaps = 2/331 (0%) Query: 1 MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M++ + L++ V S+E+A +RP+ L+E+ GQ + +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLITAEVLHSEEEAIDRAIRPKLLDEYIGQPQVKHQMEIFIQAAKMRGDALDHLL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA +VA ELGVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 IFGPPGLGKTTLAGIVANELGVNLRTTSGPVLEKAGDLAAILTNLEPHDVLFIDEIHRLS 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL FY+++DL+ IV+R A+ GL +T+E A ++AMRSRGTPRI RLLRRVRDFA+V Sbjct: 181 RLEFYQVDDLQHIVKRSAQYMGLDITEEGALQVAMRSRGTPRITNRLLRRVRDFAQVKGN 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 +I IA AL L +D GFD LD + L I F GGPVG++ ++A + E R+ IED Sbjct: 241 GSIDELIASQALDMLNVDAAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIED 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 ++EPY+IQQGFIQRTPRGR+ A+ H G+ Sbjct: 301 VLEPYLIQQGFIQRTPRGRMATAHAYLHFGL 331 >gi|37526028|ref|NP_929372.1| Holliday junction DNA helicase B [Photorhabdus luminescens subsp. laumondii TTO1] gi|44888379|sp|Q7N547|RUVB_PHOLL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|36785458|emb|CAE14405.1| Holliday junction DNA helicase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 335 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/330 (58%), Positives = 250/330 (75%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V Q+D I +RP+ L E+ GQ + C +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRLVSAEVLQDDEAIDRAIRPKLLSEYVGQPQVCEQMEIFIQAARQRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL++IV R A+ G+ +TD+ A ++AMRSRGTPRI RLLRRVRDFA+V Sbjct: 181 LEFYNVDDLQSIVSRSARFMGVEITDDGARQVAMRSRGTPRITNRLLRRVRDFAQVKGNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I IA AL L++D GFD LD + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AIDGNIATRALDMLSVDAAGFDYLDRKLLIAIIDKFMGGPVGVDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EP++IQQGFIQRT RGR+ A++H G+ Sbjct: 301 LEPFLIQQGFIQRTSRGRIATEHAYRHFGM 330 >gi|300692491|ref|YP_003753486.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction resolvasome [Ralstonia solanacearum PSI07] gi|299079551|emb|CBJ52229.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction resolvasome [Ralstonia solanacearum PSI07] Length = 357 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/319 (60%), Positives = 239/319 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L+E+ GQ + L +F+ AAK R EALDHVL GPPGLGKTTLA + Sbjct: 26 NEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKKRREALDHVLLFGPPGLGKTTLAHI 85 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 86 IAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 145 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY +L IV+ Sbjct: 146 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPTELARIVK 205 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + D+ A EIA RSRGTPRIA RLLRRVRD+AEV ITR +ADAAL L Sbjct: 206 RSAGLLDAQIVDDGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGIITRAVADAALAML 265 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT Sbjct: 266 DVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 325 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A+QH G+ P Sbjct: 326 PRGRVATASAYQHFGLGAP 344 >gi|86146484|ref|ZP_01064807.1| Holliday junction DNA helicase RuvB [Vibrio sp. MED222] gi|218709102|ref|YP_002416723.1| Holliday junction DNA helicase RuvB [Vibrio splendidus LGP32] gi|254767450|sp|B7VMI4|RUVB_VIBSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|85835747|gb|EAQ53882.1| Holliday junction DNA helicase RuvB [Vibrio sp. MED222] gi|218322121|emb|CAV18234.1| Holliday junction DNA helicase ruvB [Vibrio splendidus LGP32] Length = 338 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/320 (59%), Positives = 241/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 ED +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA Sbjct: 16 KDEDVIDRAIRPKALADYQGQDHVRGQMEIFIKAAQMRNEALDHLLIFGPPGLGKTTLAN 75 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+ Sbjct: 76 IVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPVVEEVLYPAMEDY 135 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y++EDL+ IV Sbjct: 136 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVEDLQNIV 195 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR A GL++ + A E+A R+RGTPRIA RLLRRVRD+AEV I E+AD AL Sbjct: 196 QRSADCLGLSMESQGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICPEVADKALNM 255 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D GFD +D + L I FGGGPVGI+ ++A + E RD IED++EPY+IQQG++QR Sbjct: 256 LDVDAKGFDYMDRKLLLAIMEKFGGGPVGIDNMAAAIGEERDTIEDVLEPYLIQQGYLQR 315 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ A+ H GID P Sbjct: 316 TPRGRIATDRAYLHFGIDKP 335 >gi|145590059|ref|YP_001156656.1| Holliday junction DNA helicase B [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048465|gb|ABP35092.1| Holliday junction DNA helicase RuvB [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 356 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/311 (61%), Positives = 237/311 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ +A + L++FI A +AR EALDHVL GPPGLGKTTLA ++ARELGVN Sbjct: 38 LRPKQLDEYVGQTKARAQLEIFISATRARQEALDHVLLFGPPGLGKTTLAHIIARELGVN 97 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ LD+M+GEG Sbjct: 98 LRQTSGPVLDRPGDLAALLTNLETNDVLFIDEIHRLSPVVEEILYPALEDYSLDIMIGEG 157 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI+L FTLI ATTR G+LTNPL+DRFGI RL FY E+L I+ R A L Sbjct: 158 PAARSVKIDLKPFTLIGATTRAGMLTNPLRDRFGIVARLEFYTTEELTKIITRSASLLKA 217 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ E + EIA R+RGTPRIA RLLRRVRD+AEV TIT+ +ADAAL L +D GFD Sbjct: 218 SIDPEGSIEIAKRARGTPRIANRLLRRVRDYAEVKGTGTITKAMADAALKMLDVDPSGFD 277 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT RGR+ Sbjct: 278 VMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRTSRGRVATR 337 Query: 322 IAWQHLGIDIP 332 A++H G+ P Sbjct: 338 QAYEHFGLTPP 348 >gi|238919503|ref|YP_002933018.1| holliday junction DNA helicase RuvB, [Edwardsiella ictaluri 93-146] gi|259495665|sp|C5B9T2|RUVB_EDWI9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238869072|gb|ACR68783.1| holliday junction DNA helicase RuvB, putative [Edwardsiella ictaluri 93-146] Length = 334 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/309 (61%), Positives = 239/309 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL ++ GQ + +++FI+AAK R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKTLADYVGQPQVRGQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTL+ ATTR G LT+PL+DRFGI RL FY++ DL+ IV R A GL Sbjct: 143 PAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVGRSAHCLGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+TDE A E+A RSRGTPRIA RLLRRVRDFAEV I E+A AL L +D GFD Sbjct: 203 ALTDEGALEVARRSRGTPRIANRLLRRVRDFAEVCADGRIDGEVAAQALNMLDVDAAGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGFIQRTPRGR+ Sbjct: 263 YMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFIQRTPRGRIATV 322 Query: 322 IAWQHLGID 330 A+QH GID Sbjct: 323 HAYQHFGID 331 >gi|204930997|ref|ZP_03221823.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320041|gb|EDZ05246.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 336 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/333 (58%), Positives = 250/333 (75%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ EIA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQ+GF+QRTPRGR+ AW H GI P Sbjct: 301 LEPYLIQRGFLQRTPRGRMATVRAWNHFGITPP 333 >gi|189183541|ref|YP_001937326.1| Holliday junction DNA helicase RuvB [Orientia tsutsugamushi str. Ikeda] gi|238692239|sp|B3CRA8|RUVB_ORITI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189180312|dbj|BAG40092.1| holliday junction DNA helicase RuvB [Orientia tsutsugamushi str. Ikeda] Length = 325 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/324 (59%), Positives = 247/324 (76%), Gaps = 1/324 (0%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 + LL V+ E+ + ++LRP L +FTGQ + SNLK+FI ++ R E+LDH L GPP Sbjct: 2 KNQLLDAKVASEEQE-TVLRPSLLNDFTGQNQMKSNLKIFITSSIERDESLDHTLLHGPP 60 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTT+AQ++A+E VN +ST+GP+++KA DLAA+LTNL+ DVLFIDEIHRL+I VEE Sbjct: 61 GLGKTTIAQIIAKEKNVNLKSTAGPILSKAADLAAILTNLQKNDVLFIDEIHRLNIHVEE 120 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 ILY AMEDF LD+M+GEGPSARSVKI L +FTLI ATTR+GL++ PL DRFGI ++LNFY Sbjct: 121 ILYSAMEDFSLDIMIGEGPSARSVKIYLPKFTLIGATTRLGLISKPLCDRFGIHLKLNFY 180 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E+L IV+RGAK+ +A+ AA EIA RSRGTPRIA RLL+RVRDF + + + Sbjct: 181 SCEELTKIVERGAKVLNVALDTNAAIEIANRSRGTPRIALRLLKRVRDFGIYQNINPLNQ 240 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +I D AL +L IDK+G D D +YL IA N+ GGPVGI+TI+A LSE RD IE++IEPY Sbjct: 241 QITDYALNQLGIDKLGLDSSDHKYLRFIAENYDGGPVGIDTIAAALSEQRDTIEEMIEPY 300 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327 +IQ GF+QRT RGR++ A +HL Sbjct: 301 LIQIGFVQRTQRGRVITANALKHL 324 >gi|292488537|ref|YP_003531421.1| Holliday junction ATP-dependent DNA helicase ruvB [Erwinia amylovora CFBP1430] gi|292899713|ref|YP_003539082.1| Holliday junction DNA helicase [Erwinia amylovora ATCC 49946] gi|291199561|emb|CBJ46678.1| Holliday junction DNA helicase [Erwinia amylovora ATCC 49946] gi|291553968|emb|CBA21013.1| Holliday junction ATP-dependent DNA helicase ruvB [Erwinia amylovora CFBP1430] gi|312172680|emb|CBX80936.1| Holliday junction ATP-dependent DNA helicase ruvB [Erwinia amylovora ATCC BAA-2158] Length = 334 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/318 (60%), Positives = 244/318 (76%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 +++E+ +RP+ LEE+ GQ +++FI+AA+ R +ALDH+L GPPGLGKTTLA Sbjct: 13 ITEEEVIDRAIRPKMLEEYVGQQVVREQMEIFIKAAQMRGDALDHLLIFGPPGLGKTTLA 72 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED Sbjct: 73 NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY +EDL+ I Sbjct: 133 YQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYRVEDLQHI 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V R A GL ++DE A EIA R+RGTPRIA RLLRRVRDFAEV A ++ E+A AL Sbjct: 193 VGRSAACLGLPLSDEGALEIARRARGTPRIANRLLRRVRDFAEVRAAGEMSGEVASRALD 252 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L++D GFD +D + L I F GGPVG++ ++A + E R+ IED++EPY+IQQGFIQ Sbjct: 253 MLSVDSQGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFIQ 312 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTPRGRL A+QH GI Sbjct: 313 RTPRGRLATQHAYQHFGI 330 >gi|84388520|ref|ZP_00991067.1| Holliday junction DNA helicase RuvB [Vibrio splendidus 12B01] gi|84377069|gb|EAP93940.1| Holliday junction DNA helicase RuvB [Vibrio splendidus 12B01] Length = 338 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/318 (60%), Positives = 242/318 (76%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ + +++FI+AA+ R EALDH+L GPPGLGKTTLA +V Sbjct: 18 EDVIDRAIRPKALADYQGQDHVRNQMEIFIQAAQMRNEALDHLLIFGPPGLGKTTLANIV 77 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ V+ R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL Sbjct: 78 ANEMDVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPVVEEVLYPAMEDYQL 137 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y++EDL+ IVQR Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVEDLQNIVQR 197 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A GL++ E A EIA R+RGTPRIA RLLRRVRD+AEV I ++AD AL L Sbjct: 198 SADCLGLSLESEGALEIARRARGTPRIANRLLRRVRDYAEVKGNGHICPDVADKALNMLD 257 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L I FGGGPVGI+ ++A + E RD IED++EPY+IQQG++QRTP Sbjct: 258 VDAKGFDYMDRKLLLAIMEKFGGGPVGIDNMAAAIGEERDTIEDVLEPYLIQQGYLQRTP 317 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ A+ H GID P Sbjct: 318 RGRIATDRAYLHFGIDKP 335 >gi|170726917|ref|YP_001760943.1| Holliday junction DNA helicase RuvB [Shewanella woodyi ATCC 51908] gi|238688664|sp|B1KGX9|RUVB_SHEWM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|169812264|gb|ACA86848.1| Holliday junction DNA helicase RuvB [Shewanella woodyi ATCC 51908] Length = 338 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/313 (61%), Positives = 244/313 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E+TGQ ++ + LK+FI+AA+ R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 26 MRPKMLDEYTGQDDSRAQLKIFIQAAQNRDEALDHMLIYGPPGLGKTTLAMIVANEMGVN 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG Sbjct: 86 IKSTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHRLSSVVEEILYPAMEDYQLDIMIGEG 145 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTLI ATTR G LT+PL+ RFGIP+RL FY ++DL +IV R A + L Sbjct: 146 PAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLRLEFYNVKDLSSIVTRSANVLEL 205 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A E+A RSRGTPRIA RLLRRVRDFAEV H IT+++A+ AL L ID GFD Sbjct: 206 PIDEAGAIELARRSRGTPRIANRLLRRVRDFAEVKHDGEITKQVAELALDMLDIDSEGFD 265 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+ Sbjct: 266 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRIATD 325 Query: 322 IAWQHLGIDIPHR 334 A++H I P + Sbjct: 326 RAYRHFDIIQPEK 338 >gi|253699566|ref|YP_003020755.1| Holliday junction DNA helicase RuvB [Geobacter sp. M21] gi|259495668|sp|C6E1S8|RUVB_GEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|251774416|gb|ACT16997.1| Holliday junction DNA helicase RuvB [Geobacter sp. M21] Length = 337 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/322 (59%), Positives = 246/322 (76%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+S + S++D + LRPR L ++ GQ +A NL +FI+AA+ R EALDHVL GPPGLG Sbjct: 4 LISADKSEDDLLEASLRPRALSDYVGQEKAKGNLGLFIDAARGRGEALDHVLLYGPPGLG 63 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE DVLFIDEIHRLS +VEEILY Sbjct: 64 KTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEAHDVLFIDEIHRLSHVVEEILY 123 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+ RL FY + Sbjct: 124 PAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTHD 183 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L I+ R A++ G+A+ E A E+A RSRGTPRIA RLLRRVRDFA+V ITR +A Sbjct: 184 ELAFIITRSARIFGMAIAPEGAMELARRSRGTPRIANRLLRRVRDFAQVRADGVITRAVA 243 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L ID+MGFD +D L I FGGGPVG++TI+A +SE D IED+ EP++IQ Sbjct: 244 DQALALLEIDEMGFDMMDRAILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLIQ 303 Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328 GF+ RTPRGR+ A+ H G Sbjct: 304 NGFLNRTPRGRVATAAAYSHFG 325 >gi|15602841|ref|NP_245913.1| Holliday junction DNA helicase B [Pasteurella multocida subsp. multocida str. Pm70] gi|13431840|sp|P57892|RUVB_PASMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|12721302|gb|AAK03060.1| RuvB [Pasteurella multocida subsp. multocida str. Pm70] Length = 335 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/309 (60%), Positives = 237/309 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ C + +FI+AAK R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKLLNDYVGQPHVCEQMAIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVAHEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QLD+M+GEG Sbjct: 83 IRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY +EDL +IV R A L Sbjct: 143 PAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYAVEDLTSIVARSANCLNL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +++D A EIA RSRGTPRIA RLLRRVRDFA+V HA I+ E A AALL L +D GFD Sbjct: 203 SISDTACYEIARRSRGTPRIANRLLRRVRDFADVRHAGIISEESAKAALLMLDVDDAGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+ Sbjct: 263 YLDRKLLNAVIERFDGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATS 322 Query: 322 IAWQHLGID 330 +++ G++ Sbjct: 323 RTYRYFGLE 331 >gi|269103017|ref|ZP_06155714.1| holliday junction DNA helicase RuvB [Photobacterium damselae subsp. damselae CIP 102761] gi|268162915|gb|EEZ41411.1| holliday junction DNA helicase RuvB [Photobacterium damselae subsp. damselae CIP 102761] Length = 336 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/335 (58%), Positives = 251/335 (74%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++ + L+S N + +ED +RP+ L+++ GQ +++FI+AAK R EALDH+ Sbjct: 1 MIEADRLISANHTTSREEDVIDRAIRPKLLQDYRGQDHVRDQMEIFIKAAKLRNEALDHL 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL Sbjct: 61 LIFGPPGLGKTTLANIVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S +EEILYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI Sbjct: 121 SPHIEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL +Y++EDLK IV+R A GL++ + A E+AMRSRGTPRIA RLLRRVRD+AEV Sbjct: 181 QRLEYYKVEDLKNIVKRSADCLGLSMEEAGAMEVAMRSRGTPRIANRLLRRVRDYAEVKG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 I ++A AL L +D GFD +D + L I F GGPVG++ ++A + E RD IE Sbjct: 241 DGHICPDVASKALDMLDVDSSGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERDTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 D++EPY+IQQGF+QRTPRGR+ A+ H G+DIP Sbjct: 301 DVLEPYLIQQGFLQRTPRGRIATHRAYLHFGLDIP 335 >gi|284007613|emb|CBA73225.1| Holliday junction ATP-dependent DNA helicase [Arsenophonus nasoniae] Length = 338 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 196/334 (58%), Positives = 249/334 (74%), Gaps = 1/334 (0%) Query: 1 MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S N+ E+ +RP+ L E+ GQ + C +++FI+AAK RAEALDH+L Sbjct: 1 MIEADRLVSAENLPDEEVIDRAIRPKLLTEYVGQPQVCQQMEIFIQAAKLRAEALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA ELG N R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLAGIVANELGSNLRTTSGPVLEKAGDLAAMLTNLEPNDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL+TIV R A GL ++D A +IAMRSRGTPRI RLLRRVRDFA+V Sbjct: 181 LEFYNVDDLQTIVLRSAGFMGLEISDAGARQIAMRSRGTPRITNRLLRRVRDFAQVKGNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I IA AL L +D GFD LD + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 IIDGTIAAQALDMLNVDTAGFDYLDRKLLIAIIDKFMGGPVGLDNVAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EP++IQQGFIQRTPRGR+ A++H G++ H Sbjct: 301 LEPFLIQQGFIQRTPRGRIATDHAYRHFGLNKDH 334 >gi|268589736|ref|ZP_06123957.1| holliday junction DNA helicase RuvB [Providencia rettgeri DSM 1131] gi|291314888|gb|EFE55341.1| holliday junction DNA helicase RuvB [Providencia rettgeri DSM 1131] Length = 336 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/331 (58%), Positives = 250/331 (75%), Gaps = 2/331 (0%) Query: 1 MMDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M++ + L++ V Q D + +RP+ L E+ GQ + +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLITAEVLQSDEEAIDRAIRPKLLNEYIGQPQVKDQMEIFIQAAKMRGDALDHLL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA +VA ELGVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 IFGPPGLGKTTLAGIVANELGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL FY+++DL+ IV+R A+ GL +T+E A ++AMRSRGTPRI RLLRRVRDFA+V Sbjct: 181 RLEFYQVDDLQHIVKRSAQYMGLDITEEGALQVAMRSRGTPRITNRLLRRVRDFAQVKGD 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 +I IA+ AL L +D GFD LD + L I F GGPVG++ ++A + E R+ IED Sbjct: 241 GSIDGLIANQALDMLNVDAAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIED 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 ++EPY+IQQGFIQRTPRGR+ A+ H G+ Sbjct: 301 VLEPYLIQQGFIQRTPRGRMATVHAYNHFGL 331 >gi|83749322|ref|ZP_00946319.1| RuvB [Ralstonia solanacearum UW551] gi|207727945|ref|YP_002256339.1| holliday junction dna helicase ruvb protein [Ralstonia solanacearum MolK2] gi|207742351|ref|YP_002258743.1| holliday junction dna helicase ruvb protein [Ralstonia solanacearum IPO1609] gi|83724000|gb|EAP71181.1| RuvB [Ralstonia solanacearum UW551] gi|206591188|emb|CAQ56800.1| holliday junction dna helicase ruvb protein [Ralstonia solanacearum MolK2] gi|206593741|emb|CAQ60668.1| holliday junction dna helicase ruvb protein [Ralstonia solanacearum IPO1609] Length = 357 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/319 (60%), Positives = 238/319 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L+E+ GQ + L +F+ AAK R EALDHVL GPPGLGKTTLA + Sbjct: 26 NEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKRRREALDHVLLFGPPGLGKTTLAHI 85 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 86 IAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 145 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY +L IV Sbjct: 146 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPSELSRIVT 205 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + ++ A EIA RSRGTPRIA RLLRRVRDFAEV ITR +ADAAL L Sbjct: 206 RSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGVITRAVADAALAML 265 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT Sbjct: 266 DVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 325 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A+QH G+ P Sbjct: 326 PRGRVATASAYQHFGLGAP 344 >gi|300705141|ref|YP_003746744.1| ATP-dependent DNA helicase subunit B [Ralstonia solanacearum CFBP2957] gi|299072805|emb|CBJ44160.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction resolvasome [Ralstonia solanacearum CFBP2957] Length = 357 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/319 (60%), Positives = 238/319 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L+E+ GQ + L +F+ AAK R EALDHVL GPPGLGKTTLA + Sbjct: 26 NEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKRRREALDHVLLFGPPGLGKTTLAHI 85 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 86 IAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 145 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY +L IV Sbjct: 146 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPSELSRIVT 205 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + ++ A EIA RSRGTPRIA RLLRRVRDFAEV ITR +ADAAL L Sbjct: 206 RSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGVITRAVADAALAML 265 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT Sbjct: 266 DVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 325 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A+QH G+ P Sbjct: 326 PRGRVATASAYQHFGLGAP 344 >gi|300309763|ref|YP_003773855.1| Holliday junction resolvase DNA helicase subunit [Herbaspirillum seropedicae SmR1] gi|300072548|gb|ADJ61947.1| Holliday junction resolvase, DNA helicase subunit protein [Herbaspirillum seropedicae SmR1] Length = 351 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/320 (58%), Positives = 243/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + E+A LRP+ L+E+ GQ + + L++FI AA+ R E LDH L GPPGLGKTT+A Sbjct: 21 ANEEAIERALRPKQLDEYVGQEKVRAQLEIFISAARKRGEPLDHTLLFGPPGLGKTTMAH 80 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHR+S +VEEILYPA+ED+ Sbjct: 81 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRMSPVVEEILYPALEDY 140 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSV+++L FTL+ ATTR G+LTNPL+DRFGI RL FY +L IV Sbjct: 141 QIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPPELARIV 200 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L + ++ A EIA RSRGTPRIA RLLRRVRD+AEV ITRE+ADAAL+ Sbjct: 201 TRSAGLLNAPIVEDGALEIARRSRGTPRIANRLLRRVRDYAEVKGQGRITREMADAALVM 260 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L + FGGGPVG++ ++A + E RD IED++EPY+IQQG++QR Sbjct: 261 LDVDPVGFDLMDRKLLEAVLFKFGGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGYLQR 320 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ A+QH G+ P Sbjct: 321 TPRGRIATGAAYQHFGVTAP 340 >gi|330721243|gb|EGG99342.1| Holliday junction DNA helicase RuvB [gamma proteobacterium IMCC2047] Length = 337 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/308 (61%), Positives = 239/308 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL E+ GQ +++FI AA+ RAEALDHVL GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPSTLSEYVGQDAVKEQMEIFIHAARGRAEALDHVLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRLS VEE+LYPAMED+QLD+M+GEG Sbjct: 84 IKSTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDYQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L RFTL+ ATTR GLLT+PL+DRFGI RL FY + DL IV R L + Sbjct: 144 PAARSIKLDLPRFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNVADLTHIVSRSCGLLSV 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V +E A EIA RSRGTPRIA RLLRRVRD+A+V I ++IADAAL L +D +GFD Sbjct: 204 PVNEEGAAEIARRSRGTPRIANRLLRRVRDYAQVKGDGAIGKDIADAALGMLDVDDVGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L + F GGPVG+++++A +SE RD IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 NMDRRLLLAMIEKFDGGPVGVDSLAAAISEERDTIEDVLEPYLIQQGYILRTPRGRIVTK 323 Query: 322 IAWQHLGI 329 A+ H G+ Sbjct: 324 HAYLHFGL 331 >gi|253574941|ref|ZP_04852281.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. oral taxon 786 str. D14] gi|251845987|gb|EES73995.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. oral taxon 786 str. D14] Length = 335 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 197/334 (58%), Positives = 250/334 (74%), Gaps = 3/334 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++S N+ ED + L LRPR L E+ GQ + NLK++IEAAK R EALDHVL Sbjct: 2 MEDR--IISANLMLEDQAVELSLRPRYLAEYIGQNQIKENLKIYIEAAKMRKEALDHVLL 59 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL Sbjct: 60 YGPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHR 119 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMEDF LD+M+G+GPSARSV+++L FTL+ ATTR GLL+ PL+DRFG+ R Sbjct: 120 TVEEVLYPAMEDFALDIMIGKGPSARSVRLDLPPFTLVGATTRAGLLSAPLRDRFGVVSR 179 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY I++L IV RGA + G+ + +AA EIA+RSRGTPRIA RLL+RVRD+A+V Sbjct: 180 LEFYNIDELSYIVSRGADIFGIEMIGDAATEIALRSRGTPRIANRLLKRVRDYAQVRGDG 239 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT EIA AL L +D MG D +D + L + +F GGPVG++TI+A + E IED+ Sbjct: 240 MITTEIAKEALQMLQVDPMGLDLIDHKMLRAMITSFRGGPVGLDTIAATIGEESQTIEDV 299 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY++Q GF+QRTPRGR++ P A+QHLG+ +P Sbjct: 300 YEPYLLQIGFLQRTPRGRVVTPAAYQHLGLPMPE 333 >gi|152979456|ref|YP_001345085.1| Holliday junction DNA helicase B [Actinobacillus succinogenes 130Z] gi|171704336|sp|A6VQA3|RUVB_ACTSZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|150841179|gb|ABR75150.1| Holliday junction DNA helicase RuvB [Actinobacillus succinogenes 130Z] Length = 336 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 189/317 (59%), Positives = 245/317 (77%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S ++A +RP+ L+++ GQ + S +++FI+AAK R +ALDH+L GPPGLGKTTLA Sbjct: 14 SDDEAVDRAIRPKLLQDYVGQPQVRSQMEIFIQAAKLRQDALDHLLIFGPPGLGKTTLAN 73 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+ Sbjct: 74 IVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDY 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY IEDL +IV Sbjct: 134 QLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSIEDLTSIV 193 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L ++D+A+ E+A RSRGTPRIA RLLRRVRD+A+V + IT+ IA AAL Sbjct: 194 MRSAACLNLEISDDASHEVARRSRGTPRIANRLLRRVRDYADVKNNGMITQGIAKAALAM 253 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L ID+ GFD LD + L+ I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 254 LDIDQAGFDYLDRKLLSSIIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 313 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR+ ++H G+ Sbjct: 314 TPRGRIATSQTYRHFGL 330 >gi|254506091|ref|ZP_05118235.1| Holliday junction DNA helicase RuvB [Vibrio parahaemolyticus 16] gi|219550909|gb|EED27890.1| Holliday junction DNA helicase RuvB [Vibrio parahaemolyticus 16] Length = 334 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/317 (59%), Positives = 242/317 (76%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +ED +RP+ LE++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA + Sbjct: 17 EEDVIDRAIRPKKLEDYKGQDHVRDQMEIFIKAAQLREEALDHLLIFGPPGLGKTTLANI 76 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+Q Sbjct: 77 VANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQ 136 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+I DL+ IVQ Sbjct: 137 LDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIVQ 196 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I E+AD AL L Sbjct: 197 RSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAEVADKALNML 256 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRT Sbjct: 257 DVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRT 316 Query: 314 PRGRLLMPIAWQHLGID 330 PRGR+ A+ H GI+ Sbjct: 317 PRGRIATDRAYLHFGIE 333 >gi|114330311|ref|YP_746533.1| Holliday junction DNA helicase B [Nitrosomonas eutropha C91] gi|122314643|sp|Q0AJA3|RUVB_NITEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|114307325|gb|ABI58568.1| Holliday junction DNA helicase RuvB [Nitrosomonas eutropha C91] Length = 346 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/317 (61%), Positives = 240/317 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+ LRP L+++ GQ + LK+FIEAA+ R EALDHVL GPPGLGKTTLA Sbjct: 15 SQEEVIERALRPVQLDDYVGQEKIREQLKIFIEAARQRQEALDHVLLFGPPGLGKTTLAH 74 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAMED+ Sbjct: 75 IIAREMGVNLRHTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPAMEDY 134 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEG +ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L IV Sbjct: 135 QLDIMIGEGVAARSVKIDLPSFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTSDELSKIV 194 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L + +T + A EIA RSRGTPRIA RLLRRVRDFAEV I R++ADAAL Sbjct: 195 TRSAGLLDVDITADGAREIACRSRGTPRIANRLLRRVRDFAEVRANGRIDRQVADAALQM 254 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D LD + L + FGGGPVG++ ++A ++E RD IE+++EPY+IQQGF+QR Sbjct: 255 LDVDAAGLDVLDRKLLLAVLEKFGGGPVGVDNLAAAINEERDTIEEVLEPYLIQQGFLQR 314 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR+ + +QH I Sbjct: 315 TPRGRMATTMTYQHFDI 331 >gi|221134419|ref|ZP_03560724.1| Holliday junction DNA helicase RuvB [Glaciecola sp. HTCC2999] Length = 337 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 247/329 (75%), Gaps = 1/329 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+ + +D + +RP+TL ++TGQ C + +FIEAA+ R +ALDHVL Sbjct: 1 MIEEDRLIQASAKNDDEAVDRAIRPKTLADYTGQDHVCEQMSIFIEAARKRTDALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+ VN ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIANEMDVNIKTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L+ FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLAPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY IEDL I+ R AK + + E A EIA R+RGTPRIA RLLRRVRD+AE+ Sbjct: 181 LEFYNIEDLTDIIMRSAKYLNVEMVTEGALEIAKRARGTPRIANRLLRRVRDYAEIKSNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 T+ IA AL L +DK+GFD +D + L I F GGPVG++ ++A + E ++ IED+ Sbjct: 241 TVDEHIAALALDMLDVDKVGFDYMDRKLLEAIIDKFDGGPVGLDNLAAAIGEEKETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 IEP++IQQGF+QRTPRGR+ A++HLG Sbjct: 301 IEPFLIQQGFLQRTPRGRIASNRAYEHLG 329 >gi|319941759|ref|ZP_08016081.1| Holliday junction ATP-dependent DNA helicase ruvB [Sutterella wadsworthensis 3_1_45B] gi|319804692|gb|EFW01559.1| Holliday junction ATP-dependent DNA helicase ruvB [Sutterella wadsworthensis 3_1_45B] Length = 350 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/322 (59%), Positives = 244/322 (75%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N ++E+ D +L RP L ++ GQ L++FIEAA+ R + LDH+L GPPGLGKTTL Sbjct: 16 NPNEENVDRAL-RPTRLADYVGQKAVREQLQIFIEAARRRGDPLDHLLLFGPPGLGKTTL 74 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A +VA E+GVN R TSGPV+ + GDLAA+LTNLE DVLFIDEIHRLS +VEEILYPA+E Sbjct: 75 AHIVAEEMGVNLRQTSGPVLERPGDLAAILTNLEKNDVLFIDEIHRLSPVVEEILYPALE 134 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+Q+D+M+GEGP+ARS+K++L FTLI ATTR G LTNPL+ RFGI +L FY E+L T Sbjct: 135 DYQIDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTNPLRARFGIVNQLQFYTTEELIT 194 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV+R A+L G+++ E A EIA RSRGTPR+A RLLRRVRD+AEV H TITRE+A AAL Sbjct: 195 IVRRSARLLGVSIDPEGAAEIASRSRGTPRVANRLLRRVRDYAEVRHDGTITREVASAAL 254 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L +D +G D +D R+L I F GGPVGI+ ++A + E RD +ED++EPY+IQQGF+ Sbjct: 255 TMLDVDPVGLDFIDRRFLLTILEKFSGGPVGIDNLAAAIGEDRDTLEDVVEPYLIQQGFL 314 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 QRTPRGR+ AW+H + P Sbjct: 315 QRTPRGRMAAHRAWEHFKLTPP 336 >gi|88861318|ref|ZP_01135949.1| Holliday junction helicase, subunit B [Pseudoalteromonas tunicata D2] gi|88816697|gb|EAR26521.1| Holliday junction helicase, subunit B [Pseudoalteromonas tunicata D2] Length = 335 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/318 (59%), Positives = 241/318 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ED+ +RP+ L ++TGQ +++FI+AA +R EALDH+L GPPGLGKTTLA + Sbjct: 15 NEDSIDRAIRPKMLADYTGQPHVKGQMEIFIQAANSRQEALDHLLIFGPPGLGKTTLANI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA ELGV+ ++TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EEILYPAMED+Q Sbjct: 75 VANELGVSIKTTSGPVLEKAGDLAAMLTNLEAHDVLFIDEIHRLSPHIEEILYPAMEDYQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY + DL +IV+ Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVADLSSIVK 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + DE A EIAMRSRGTPRIA RLLRRVRD+A+V T+ + IA AL + Sbjct: 195 RSAHYLNLQMDDEGANEIAMRSRGTPRIANRLLRRVRDYAQVKADGTVNQHIASLALDMV 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +DK GFD +D +YL + F GGPVG++ I+A + E R+ IED+IEPY+IQQGFIQRT Sbjct: 255 DVDKQGFDFMDRKYLLAVIEKFSGGPVGLDNIAAAIGEERETIEDVIEPYLIQQGFIQRT 314 Query: 314 PRGRLLMPIAWQHLGIDI 331 PRGR++ A+ H G+ I Sbjct: 315 PRGRIVSDRAYLHFGLMI 332 >gi|189425232|ref|YP_001952409.1| Holliday junction DNA helicase RuvB [Geobacter lovleyi SZ] gi|238692114|sp|B3E468|RUVB_GEOLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189421491|gb|ACD95889.1| Holliday junction DNA helicase RuvB [Geobacter lovleyi SZ] Length = 338 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 196/332 (59%), Positives = 246/332 (74%), Gaps = 5/332 (1%) Query: 8 LSRNVSQEDADISL-----LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 + R ++ E D L LRPRTL+++ GQ + NLK+FI+AAK R+EALDHVL GP Sbjct: 1 MERAITPEKRDDDLQFDATLRPRTLQDYIGQEKIRENLKLFIDAAKGRSEALDHVLLYGP 60 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE DVLFIDEIHRLS +VE Sbjct: 61 PGLGKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVE 120 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 EILYPAMEDFQLD+++G+GPSARS+K++L RFTL+ ATTR GLL++PL+DRFG+ RL F Sbjct: 121 EILYPAMEDFQLDIIIGQGPSARSIKLDLPRFTLVGATTRAGLLSSPLRDRFGVISRLEF 180 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y ++L IV R A++ G+A+ E A E+A RSRGTPRIA RLLRRVRD+A+V IT Sbjct: 181 YTHDELAFIVTRSARILGMAIDREGALELARRSRGTPRIANRLLRRVRDYAQVRADGAIT 240 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 + L L ID+MGFDQ+D L I FGGGPVG++TI A + E D IED+ EP Sbjct: 241 LSVVQETLRLLEIDEMGFDQMDRMILLTIIDKFGGGPVGLDTIGAAIGEESDTIEDVYEP 300 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++IQ GF+ RTPRGR+ P A+QH G P R Sbjct: 301 FLIQNGFLNRTPRGRVATPAAYQHFGRLTPER 332 >gi|226329885|ref|ZP_03805403.1| hypothetical protein PROPEN_03798 [Proteus penneri ATCC 35198] gi|225200680|gb|EEG83034.1| hypothetical protein PROPEN_03798 [Proteus penneri ATCC 35198] Length = 336 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/330 (58%), Positives = 247/330 (74%), Gaps = 2/330 (0%) Query: 1 MMDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M++ + L+S + Q + +I +RP++L E+ GQ + +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAEIQQPEEEIIDRAIRPKSLAEYVGQPQVREQMEIFIQAAKLRHDALDHLL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 IFGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTL+ ATTR G LT+PL+DRFGI Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQ 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL FY ++DL+ IV R A GL +TDE A +IAMRSRGTPRI RLLRRVRDFA+V Sbjct: 181 RLEFYHVDDLQHIVSRSASFMGLEMTDEGARQIAMRSRGTPRITNRLLRRVRDFAQVKGN 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 I EIA AL L +D GFD LD + L I F GGPVG++ ++A + E R+ IED Sbjct: 241 GAIDEEIASKALDMLNVDAAGFDYLDRKLLFAIIDKFMGGPVGLDNLAAAIGEERETIED 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 ++EPY+IQQGFIQRTPRGR+ A++H Sbjct: 301 VLEPYLIQQGFIQRTPRGRVATNHAYRHFN 330 >gi|253989948|ref|YP_003041304.1| Holliday junction DNA helicase RuvB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639071|emb|CAR67684.1| ruvb protein, holliday junction helicase subunit a (ec 3.6.1.-) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781398|emb|CAQ84561.1| RuvB protein, holliday junction helicase subunit A [Photorhabdus asymbiotica] Length = 335 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/330 (57%), Positives = 250/330 (75%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + +D I +RP+ L E+ GQ + C +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRLVSAEILPDDEAIDRAIRPKLLSEYVGQPQVCEQMEIFIQAARQRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL++IV R A+ G+ +TD+ A ++AMRSRGTPRI RLLRRVRDFA+V Sbjct: 181 LEFYNVDDLQSIVSRSARFMGVDITDDGARQVAMRSRGTPRITNRLLRRVRDFAQVKGDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I +IA AL L++D GFD LD + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AIDGDIATRALDMLSVDSAGFDYLDRKLLIAIIDKFMGGPVGVDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EP++IQQGFIQRT RGR+ A++H GI Sbjct: 301 LEPFLIQQGFIQRTSRGRIATNHAYRHFGI 330 >gi|296112685|ref|YP_003626623.1| holliday junction DNA helicase RuvB [Moraxella catarrhalis RH4] gi|295920379|gb|ADG60730.1| holliday junction DNA helicase RuvB [Moraxella catarrhalis RH4] gi|326560942|gb|EGE11307.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis 7169] gi|326563933|gb|EGE14183.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis 12P80B1] gi|326567325|gb|EGE17440.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis BC1] Length = 329 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/319 (59%), Positives = 246/319 (77%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+ N ++D +RP +L+E+ GQ + +KVFI AA+AR EALDH L GPPGLG Sbjct: 6 LIDPNPKKDDTADRAIRPSSLDEYIGQPKVREQMKVFIPAARARGEALDHTLIFGPPGLG 65 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A+E+G N RSTSGPV+ +AGDLAA+LTNLE DVLFIDEIHRLS ++EEILY Sbjct: 66 KTTLANIIAKEMGGNLRSTSGPVLERAGDLAAILTNLEAGDVLFIDEIHRLSPVIEEILY 125 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLD+M+GEGP+ARS+K++L FTL+AATTR GLL+ PL DRFGI RL FY +E Sbjct: 126 PAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLSAPLFDRFGIVQRLEFYNVE 185 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 DL TIV+R A+L G+ + D A E+A RSRGTPRIA RLLRRVRD+AE+ T +IA Sbjct: 186 DLTTIVKRSARLLGVLMDDGGALEVAHRSRGTPRIANRLLRRVRDYAEIKGDGVATADIA 245 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 AAL LA+DK G DQLD RYL+++++ F GGP G+E ++A ++E R +ED+IEPY++Q Sbjct: 246 SAALDMLAVDKQGLDQLDRRYLSVLSQRFHGGPAGVEALAAAMAEDRGTLEDVIEPYLLQ 305 Query: 307 QGFIQRTPRGRLLMPIAWQ 325 QG+IQRT +GR++ +Q Sbjct: 306 QGYIQRTSKGRIISDKVFQ 324 >gi|332305759|ref|YP_004433610.1| Holliday junction DNA helicase RuvB [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173088|gb|AEE22342.1| Holliday junction DNA helicase RuvB [Glaciecola agarilytica 4H-3-7+YE-5] Length = 335 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/331 (57%), Positives = 249/331 (75%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+ +ED I +RP+ L ++TGQ C + +FI AA+ R++ALDH+L Sbjct: 1 MIEADRLIQPTAIREDEVIDRAIRPKMLADYTGQDHVCEQMDIFIRAARKRSDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GV+ ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVSIKTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K+ L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLELPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY I+DL IV+R A+ L + ++ A EIA RSRGTPRI+ RLLRRVRD+AE+ Sbjct: 181 LEFYNIKDLTQIVKRSAEFLALDLAEDGAIEIAKRSRGTPRISNRLLRRVRDYAEIKSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ ++A AAL L +DK GFD +D + LT I F GGPVG++ ++A + E RD IED+ Sbjct: 241 KISSQVASAALDMLDVDKEGFDYMDRKLLTTIIEKFMGGPVGLDNLAAAIGEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 IEP++IQQGF+QRTPRGR++ A+ H G D Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGFD 331 >gi|221064963|ref|ZP_03541068.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni KF-1] gi|220709986|gb|EED65354.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni KF-1] Length = 365 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/311 (61%), Positives = 235/311 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ +A L++FI AAK R+EALDHVL GPPGLGKTTL+ ++A ELGVN Sbjct: 49 LRPKQLDEYVGQAKAREQLEIFISAAKKRSEALDHVLLFGPPGLGKTTLSHIIAAELGVN 108 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q+D+M+GEG Sbjct: 109 LRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEG 168 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV+R A L Sbjct: 169 PAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYSSEELSRIVKRSAGLLNA 228 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E EIA RSRGTPRIA RLLRRVRD+A+V ITREIAD AL L +D GFD Sbjct: 229 PIDEEGCFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITREIADKALAMLDVDPQGFD 288 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + F GGPVG++ I+A + E IED+IEPY+IQQGF+QRTPRGR+ Sbjct: 289 IMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGFLQRTPRGRMATQ 348 Query: 322 IAWQHLGIDIP 332 A++HLG+ P Sbjct: 349 AAYRHLGLQAP 359 >gi|17545219|ref|NP_518621.1| Holliday junction DNA helicase B [Ralstonia solanacearum GMI1000] gi|20140050|sp|Q8Y236|RUVB_RALSO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|17427510|emb|CAD14028.1| probable holliday junction dna helicase ruvb protein [Ralstonia solanacearum GMI1000] Length = 357 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/319 (60%), Positives = 238/319 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L+E+ GQ + L +F+ AAK R EALDHVL GPPGLGKTTLA + Sbjct: 26 NEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKKRREALDHVLLFGPPGLGKTTLAHI 85 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 86 IAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 145 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY +L IV Sbjct: 146 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPTELARIVT 205 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + ++ A EIA RSRGTPRIA RLLRRVRD+AEV ITR +ADAAL L Sbjct: 206 RSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGVITRAVADAALAML 265 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT Sbjct: 266 DVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 325 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A+QH G+ P Sbjct: 326 PRGRVATASAYQHFGLGAP 344 >gi|322832436|ref|YP_004212463.1| Holliday junction DNA helicase RuvB [Rahnella sp. Y9602] gi|321167637|gb|ADW73336.1| Holliday junction DNA helicase RuvB [Rahnella sp. Y9602] Length = 335 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 195/330 (59%), Positives = 250/330 (75%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V S+E+ +RP+ L E+ GQ S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISPEVFSEEEVIDRAIRPKLLSEYVGQPHVRSQMEIFIQAAKQRKDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A GL +++E A +IA RSRGTPRIA RLLRRVRDFAEV Sbjct: 181 LEFYQVADLQHIVGRSASCLGLELSEEGAHQIARRSRGTPRIANRLLRRVRDFAEVKGDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI ++A+ AL L +D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 TINGDVANGALDMLDVDAEGFDYMDRKLLLAIIDKFSGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 IEP++IQQGFIQRTPRGR+ A++H GI Sbjct: 301 IEPFLIQQGFIQRTPRGRMATNHAYKHFGI 330 >gi|148653254|ref|YP_001280347.1| Holliday junction DNA helicase RuvB [Psychrobacter sp. PRwf-1] gi|172048527|sp|A5WFF6|RUVB_PSYWF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|148572338|gb|ABQ94397.1| Holliday junction DNA helicase subunit RuvB [Psychrobacter sp. PRwf-1] Length = 325 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 191/306 (62%), Positives = 237/306 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL E+ GQ ++VFIEAA+ R EALDH L GPPGLGKTTLA ++ARE+G N Sbjct: 20 IRPSTLAEYIGQPVVREQMEVFIEAARRRNEALDHTLIFGPPGLGKTTLANIIAREMGGN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 RSTSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EEILYPAMEDFQLD+M+GEG Sbjct: 80 LRSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDFQLDIMIGEG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL FY IEDL TIV R A+L + Sbjct: 140 PAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYNIEDLTTIVSRSARLMNV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T E A E+A RSRGTPRIA RLLRRVRD+A+V +T EIAD+AL LA+D+ G D Sbjct: 200 VMTPEGAVEVARRSRGTPRIANRLLRRVRDYAQVKSNGEVTGEIADSALDMLAVDRRGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD RY+ M+ F GP G+E I+A ++E R +ED+IEPY+IQQG++ RT RGR+L Sbjct: 260 HLDRRYIEMVHARFDNGPAGVEAIAAAMAEDRGTLEDVIEPYLIQQGYVLRTARGRVLTQ 319 Query: 322 IAWQHL 327 +A L Sbjct: 320 MAIDQL 325 >gi|239995978|ref|ZP_04716502.1| Holliday junction DNA helicase RuvB [Alteromonas macleodii ATCC 27126] Length = 334 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/330 (57%), Positives = 248/330 (75%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L++ S ED I +RP+ LE++TGQ C +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRLITPEASTEDEVIDRAIRPKMLEDYTGQPHVCEQMEIFIQAARNRDDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLERNDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL +IV R A L + DE A E+A RSRGTPRIA RLLRRVRD+AE+ Sbjct: 181 LEFYNVKDLTSIVARSASYLNLDMNDEGAQEVARRSRGTPRIANRLLRRVRDYAEIKADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 T+ + A AL L +DK GFD +D + LT I F GGPVG++ ++A + E ++ IED+ Sbjct: 241 TVGADTASKALDMLDVDKEGFDYMDRKLLTAIIEKFDGGPVGLDNLAAAIGEEKETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 IEP++IQQGF+QRTPRGR++ A+ H G Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGF 330 >gi|315634722|ref|ZP_07890006.1| crossover junction ATP-dependent DNA helicase RuvB [Aggregatibacter segnis ATCC 33393] gi|315476670|gb|EFU67418.1| crossover junction ATP-dependent DNA helicase RuvB [Aggregatibacter segnis ATCC 33393] Length = 337 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/331 (58%), Positives = 246/331 (74%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S V ED +RP+ L ++ GQ + C +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRIISATVKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAQLRQDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY + DL +IV R A L + D AA EIA RSRGTPRIA RLLRRVRD+A+V + Sbjct: 181 LEFYSVPDLTSIVSRSAVCLQLKIDDSAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT IA AAL L ID GFD LD + LT + F GGPVG++ ++A + E RD IED+ Sbjct: 241 VITETIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 +EPY+IQQGF+QRTPRGR+ ++H GI+ Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSTTYRHFGIE 331 >gi|152979831|ref|YP_001352001.1| Holliday junction DNA helicase RuvB [Janthinobacterium sp. Marseille] gi|172049085|sp|A6SUQ4|RUVB_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|151279908|gb|ABR88318.1| holliday junction DNA helicase [Janthinobacterium sp. Marseille] Length = 352 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/321 (58%), Positives = 242/321 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + E+A LRP+ L+E+ GQ + L++FI AA+ R EALDH L GPPGLGKTTLA Sbjct: 21 ANEEAIERALRPKQLDEYVGQEKIRGQLEIFITAARQRHEALDHTLLFGPPGLGKTTLAH 80 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 81 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSV+++L FTL+ ATTR G+LTNPL+DRFGI RL FY +L IV Sbjct: 141 QIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPLELTKIV 200 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R + L + ++ A EIA RSRGTPRIA RLLRRVRD+AEV IT+ +ADAAL+ Sbjct: 201 TRSSALLNAPIDEDGAFEIAKRSRGTPRIANRLLRRVRDYAEVKGNGKITKAMADAALVM 260 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 261 LDVDPVGFDLMDRKLLEAVLFKFNGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 320 Query: 313 TPRGRLLMPIAWQHLGIDIPH 333 TPRGR+ P+A+ H G+ P Sbjct: 321 TPRGRIATPVAYAHFGVTAPQ 341 >gi|78048833|ref|YP_365008.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|97190443|sp|Q3BQF5|RUVB_XANC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|78037263|emb|CAJ25008.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 346 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 193/332 (58%), Positives = 249/332 (75%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ + S + ++DA + +RP+ L ++ GQ ++++I+AAKAR EA+DHVL Sbjct: 1 MTEQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIF 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS + Sbjct: 61 GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY ++L IV R A + G+ T E A EIA R+RGTPRIA RLLRRVRD+A+V A Sbjct: 181 EFYSPQELTRIVSRSAAILGIDCTPEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGH 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +A AA+ L +D GFD+LD R L I +F GGPVG+E+++A LSE R +ED+I Sbjct: 241 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQQGF+ RT RGR++ P A+ HLG+ +P Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKVP 332 >gi|114563351|ref|YP_750864.1| Holliday junction DNA helicase B [Shewanella frigidimarina NCIMB 400] gi|122299599|sp|Q081N9|RUVB_SHEFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|114334644|gb|ABI72026.1| Holliday junction DNA helicase RuvB [Shewanella frigidimarina NCIMB 400] Length = 336 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/335 (57%), Positives = 251/335 (74%), Gaps = 1/335 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+ V +D I +RP+ L+E+TGQ + + LKVFI+AA R EALDH+L Sbjct: 1 MIEADRLIQPQVQGQDELIDRAMRPKMLDEYTGQDDTRAQLKVFIQAAINRREALDHMLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+G+GP+ARS+K++L FTLI ATTR G LT+PL+ RFGIP+R Sbjct: 121 VVEEILYPAMEDYQLDIMIGDGPAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY + DL TIV R A + L + ++ A EIA RSRGTPRIA RLLRRVRD+AEV H Sbjct: 181 LEFYNVADLTTIVTRSANVMNLEIDEQGAIEIAKRSRGTPRIANRLLRRVRDYAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 +++ +A+ AL L +D GFD LD + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 KVSQTVAEYALDLLDVDDQGFDYLDRKLLLAIIDKFMGGPVGLDNLAAAIGEDRETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 +EP++IQQGFIQRTPRGR+ A+ H + P + Sbjct: 301 LEPFLIQQGFIQRTPRGRIASQRAYDHFSLVRPEK 335 >gi|299067940|emb|CBJ39154.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction resolvasome [Ralstonia solanacearum CMR15] Length = 357 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/319 (60%), Positives = 238/319 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L+E+ GQ + L +F+ AAK R EALDHVL GPPGLGKTTLA + Sbjct: 26 NEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKRRREALDHVLLFGPPGLGKTTLAHI 85 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 86 IAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 145 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY +L IV Sbjct: 146 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPTELARIVT 205 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + ++ A EIA RSRGTPRIA RLLRRVRD+AEV ITR +ADAAL L Sbjct: 206 RSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGVITRAVADAALAML 265 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT Sbjct: 266 DVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 325 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A+QH G+ P Sbjct: 326 PRGRVATASAYQHFGLGAP 344 >gi|261364994|ref|ZP_05977877.1| holliday junction DNA helicase RuvB [Neisseria mucosa ATCC 25996] gi|288566579|gb|EFC88139.1| holliday junction DNA helicase RuvB [Neisseria mucosa ATCC 25996] Length = 343 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 196/319 (61%), Positives = 243/319 (76%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+ LRP+TL+++ GQ +A L +FI+AAK R EALDH L GPPGLGKTTLA Sbjct: 23 SQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY+ +DL TIV Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYQNQDLATIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L + DE A E+A RSRGTPRIA RLLRRVRDFA+V + I +ADAAL Sbjct: 203 SRSAQLLQLDMGDEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L I F GGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAQGLDVMDRKFLEAILHKFSGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ A+ H G+ + Sbjct: 323 TPRGRMATERAYLHFGLKM 341 >gi|109899251|ref|YP_662506.1| Holliday junction DNA helicase B [Pseudoalteromonas atlantica T6c] gi|123064361|sp|Q15RN6|RUVB_PSEA6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|109701532|gb|ABG41452.1| Holliday junction DNA helicase RuvB [Pseudoalteromonas atlantica T6c] Length = 335 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/331 (58%), Positives = 249/331 (75%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+ +ED I +RP+ L ++TGQ C + +FI+AA+ R++ALDH+L Sbjct: 1 MIEADRLIQPTALREDEVIDRAIRPKMLADYTGQDHVCEQMDIFIQAARKRSDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GV+ ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVSIKTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K+ L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLELPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY I+DL IV+R A L + +E A EIA RSRGTPRI+ RLLRRVRD+AE+ Sbjct: 181 LEFYNIKDLTQIVKRSAHFLELNLDEEGAMEIAKRSRGTPRISNRLLRRVRDYAEIKANG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ ++A AAL L +DK GFD +D + LT I F GGPVG++ ++A + E RD IED+ Sbjct: 241 EISSDVASAALDMLDVDKEGFDYMDRKLLTTIIDKFMGGPVGLDNLAAAIGEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 IEP++IQQGF+QRTPRGR++ A+ H G D Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGYD 331 >gi|296313653|ref|ZP_06863594.1| holliday junction DNA helicase RuvB [Neisseria polysaccharea ATCC 43768] gi|296839793|gb|EFH23731.1| holliday junction DNA helicase RuvB [Neisseria polysaccharea ATCC 43768] Length = 343 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 196/319 (61%), Positives = 244/319 (76%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+ LRP+TL+++ GQ +A L +FI+AAK R EALDH L GPPGLGKTTLA Sbjct: 23 SQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY+ +DL TIV Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYQNQDLATIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L + +E A E+A RSRGTPRIA RLLRRVRDFA+V + I +ADAAL Sbjct: 203 SRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L I FGGGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAQGLDVMDRKFLEAILHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ A+ H G+ + Sbjct: 323 TPRGRMATERAYLHFGLPV 341 >gi|261252502|ref|ZP_05945075.1| holliday junction DNA helicase RuvB [Vibrio orientalis CIP 102891] gi|260935893|gb|EEX91882.1| holliday junction DNA helicase RuvB [Vibrio orientalis CIP 102891] Length = 334 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/318 (59%), Positives = 241/318 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED +RP+ L+++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA Sbjct: 16 KEEDVIDRAIRPKKLDDYKGQDHVRGQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLAN 75 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+ Sbjct: 76 IVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDY 135 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+I DL+ IV Sbjct: 136 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIV 195 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I E+AD AL Sbjct: 196 QRSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAEVADKALNM 255 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D GFD +D + L I FGGGPVGI+ ++A + E +D IED++EPY+IQQG++QR Sbjct: 256 LDVDAQGFDYMDRKLLLAIMEKFGGGPVGIDNMAAAIGEEKDTIEDVLEPYLIQQGYLQR 315 Query: 313 TPRGRLLMPIAWQHLGID 330 TPRGR+ A+ H GI+ Sbjct: 316 TPRGRIATDRAYLHFGIE 333 >gi|152988470|ref|YP_001349890.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PA7] gi|166231539|sp|A6VA05|RUVB_PSEA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|150963628|gb|ABR85653.1| holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PA7] Length = 352 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/313 (61%), Positives = 238/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ +++FI AA+ R EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAALLTNLE DVLF+DEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY +EDL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR IAD AL L +D+ GFD Sbjct: 204 QIETQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQGDITRVIADKALNLLDVDERGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R L + F GGPVGI+ ++A LSE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPKR 336 >gi|209695356|ref|YP_002263285.1| Holliday junction DNA helicase RuvB [Aliivibrio salmonicida LFI1238] gi|226698771|sp|B6EGJ4|RUVB_ALISL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|208009308|emb|CAQ79574.1| holliday junction ATP-dependent DNA helicase RuvB [Aliivibrio salmonicida LFI1238] Length = 337 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/313 (59%), Positives = 242/313 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ LE++ GQ S +++FI+AA+ R E LDH+L GPPGLGKTTLA +VA E+GV+ Sbjct: 25 IRPKKLEDYRGQDHVRSQMEIFIKAAQMRQEPLDHLLIFGPPGLGKTTLANIVANEMGVS 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAALLTNLE+ D+LFIDEIHRLS +VEEILYPAMED+QLD+M+GEG Sbjct: 85 IRTTSGPVLEKAGDLAALLTNLEENDILFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+++DL+ IVQR A L Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVDDLQYIVQRSADCLNL 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ E A E+A R+RGTPRIA RLLRRVRD+A+V I+ +IAD AL L +D GFD Sbjct: 205 SMESEGALEVARRARGTPRIANRLLRRVRDYADVMSDSHISPDIADKALNMLDVDVCGFD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E +D IED+IEPY+IQQG++QRTPRGR++ Sbjct: 265 YMDRKLLLAIMEKFNGGPVGLDNVAAAIGEEKDTIEDVIEPYLIQQGYLQRTPRGRIVSD 324 Query: 322 IAWQHLGIDIPHR 334 A+ H GID P + Sbjct: 325 RAYLHFGIDRPDK 337 >gi|300717083|ref|YP_003741886.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae Eb661] gi|299062919|emb|CAX60039.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae Eb661] Length = 334 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/319 (58%), Positives = 246/319 (77%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +++E+ +RP+ L+E+ GQ +++FI+AAK R +ALDH+L GPPGLGKTTL Sbjct: 12 TITEEEVIDRAIRPKLLQEYVGQPVVREQMEIFIQAAKMRGDALDHLLIFGPPGLGKTTL 71 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAME Sbjct: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY++EDL+ Sbjct: 132 DYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYKVEDLRH 191 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R A GL ++DE A EIA R+RGTPRIA RLLRRVRDF+EV A +++ ++A AL Sbjct: 192 IVSRSAACLGLPLSDEGALEIARRARGTPRIANRLLRRVRDFSEVRAAGSLSGDVASRAL 251 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L++D GFD +D + L I F GGPVG++ ++A + E R+ IED++EPY+IQQGFI Sbjct: 252 DMLSVDTEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFI 311 Query: 311 QRTPRGRLLMPIAWQHLGI 329 QRTPRGR+ A++H GI Sbjct: 312 QRTPRGRMATNHAYKHFGI 330 >gi|222055416|ref|YP_002537778.1| Holliday junction DNA helicase RuvB [Geobacter sp. FRC-32] gi|254767428|sp|B9LZC4|RUVB_GEOSF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|221564705|gb|ACM20677.1| Holliday junction DNA helicase RuvB [Geobacter sp. FRC-32] Length = 339 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/326 (57%), Positives = 247/326 (75%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 ++ +++ +D + LRP++L+++ GQ +A NL+VFIEAA+ R EALDHVL GPPGLGK Sbjct: 5 ITPDMTDDDLLEATLRPKSLDDYVGQEKAKGNLRVFIEAARGRGEALDHVLLYGPPGLGK 64 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE DVLFIDEIHRLS +VEEILYP Sbjct: 65 TTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLETHDVLFIDEIHRLSHVVEEILYP 124 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+ RL FY IE+ Sbjct: 125 AMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTIEE 184 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L I+ R A++ G+ + E A E+A RSRGTPRIA RLLRRVRDFA+V IT + Sbjct: 185 LAFIITRSARILGMEIKPEGATELARRSRGTPRIANRLLRRVRDFAQVKADGVITLNVVQ 244 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L ID MGFD +D L I FGGGPVG++TI+A +SE D IED+ EP++IQ Sbjct: 245 DALALLEIDHMGFDYMDRMILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLIQN 304 Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333 GF+ RTPRGR+ A++H G +P Sbjct: 305 GFLNRTPRGRVATRAAYEHFGRIVPE 330 >gi|254499311|ref|ZP_05111983.1| Holliday junction DNA helicase B [Legionella drancourtii LLAP12] gi|254351466|gb|EET10329.1| Holliday junction DNA helicase B [Legionella drancourtii LLAP12] Length = 336 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 191/332 (57%), Positives = 250/332 (75%), Gaps = 3/332 (0%) Query: 1 MMDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M++ + L+S VS+E D ++ RP +L E+ GQ S +++FI+AAK R +ALDHVL Sbjct: 1 MLESDRLISTQSTVSEEAIDRAI-RPLSLREYIGQEAVSSQMQIFIDAAKKRNDALDHVL 59 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA ++A E+GVN R TSGPVI +AGD+AA+LTNL++ DVLFIDEIHRLS Sbjct: 60 IFGPPGLGKTTLANIIAHEMGVNLRQTSGPVIERAGDIAAILTNLQENDVLFIDEIHRLS 119 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 ++EEILYPAMED++LD+M+GEGP+ARS+K+ L FTLI ATTR GLLT+PL+DRFGI Sbjct: 120 PVIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQ 179 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL +Y I+ L IV R A+L + E A EIAMRSRGTPRIA RLLRRVRD+AEV + Sbjct: 180 RLEYYSIDSLSQIVSRSAQLLNVVTQSEGAREIAMRSRGTPRIANRLLRRVRDYAEVKGS 239 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 I +IA AL L +DK GFD +D + L + FGGGPVG+++I+A + E + IED Sbjct: 240 GVINIDIAQRALEMLDVDKNGFDLMDRKLLLSVIEQFGGGPVGVDSIAAAIGEEKGTIED 299 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 ++EP++IQQGF+ RTPRGR+ P A+QH G++ Sbjct: 300 VLEPFLIQQGFLMRTPRGRIATPRAYQHFGLN 331 >gi|238693244|sp|B4RTT8|RUVB_ALTMD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB Length = 334 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/330 (57%), Positives = 248/330 (75%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L++ S ED I +RP+ LE++TGQ C +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRLITPEASTEDEVIDRAIRPKMLEDYTGQPHVCEQMEIFIQAARNRDDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLERNDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL +IV R A L + +E A E+A RSRGTPRIA RLLRRVRD+AE+ Sbjct: 181 LEFYNVKDLTSIVARSASYLNLEMNEEGAQEVARRSRGTPRIANRLLRRVRDYAEIKSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 T+ E A AL L +DK GFD +D + L+ I F GGPVG++ ++A + E ++ IED+ Sbjct: 241 TVGAETAAKALDMLDVDKEGFDYMDRKLLSAIIEKFDGGPVGLDNLAAAIGEEKETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 IEP++IQQGF+QRTPRGR++ A+ H G Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGF 330 >gi|15596164|ref|NP_249658.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PAO1] gi|107100424|ref|ZP_01364342.1| hypothetical protein PaerPA_01001449 [Pseudomonas aeruginosa PACS2] gi|116048892|ref|YP_792307.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa UCBPP-PA14] gi|218893062|ref|YP_002441931.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa LESB58] gi|254239315|ref|ZP_04932638.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa C3719] gi|254245250|ref|ZP_04938572.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa 2192] gi|296390674|ref|ZP_06880149.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PAb1] gi|313105854|ref|ZP_07792117.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa 39016] gi|12231031|sp|Q51426|RUVB_PSEAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|122257999|sp|Q02IC9|RUVB_PSEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226725463|sp|B7UXW5|RUVB_PSEA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|9946874|gb|AAG04356.1|AE004530_9 Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PAO1] gi|115584113|gb|ABJ10128.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa UCBPP-PA14] gi|126171246|gb|EAZ56757.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa C3719] gi|126198628|gb|EAZ62691.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa 2192] gi|218773290|emb|CAW29102.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa LESB58] gi|310878619|gb|EFQ37213.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa 39016] Length = 352 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/313 (61%), Positives = 238/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ +++FI AA+ R EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAALLTNLE DVLF+DEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY +EDL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR IAD AL L +D+ GFD Sbjct: 204 EIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQGDITRVIADKALNLLDVDERGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R L + F GGPVGI+ ++A LSE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPKR 336 >gi|269138791|ref|YP_003295492.1| holliday junction resolvasome, helicase subunit [Edwardsiella tarda EIB202] gi|267984452|gb|ACY84281.1| holliday junction resolvasome, helicase subunit [Edwardsiella tarda EIB202] gi|304558783|gb|ADM41447.1| Holliday junction DNA helicase RuvB [Edwardsiella tarda FL6-60] Length = 334 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/309 (60%), Positives = 239/309 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL ++ GQ + +++FI+AAK R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKTLADYVGQPQVRGQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTL+ ATTR G LT+PL+DRFGI RL FY++ DL+ IV R A+ GL Sbjct: 143 PAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVGRSAQCLGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T+E A E+A RSRGTPRIA RLLRRVRDFAEV I ++A AL L +D GFD Sbjct: 203 TLTEEGALEVARRSRGTPRIANRLLRRVRDFAEVCADGHIDGKVAAQALNMLDVDAAGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGFIQRTPRGR+ Sbjct: 263 YMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFIQRTPRGRIATA 322 Query: 322 IAWQHLGID 330 A+QH GID Sbjct: 323 HAYQHFGID 331 >gi|134093540|ref|YP_001098615.1| Holliday junction DNA helicase RuvB [Herminiimonas arsenicoxydans] gi|172044146|sp|A4G1U9|RUVB_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|133737443|emb|CAL60486.1| Holliday junction DNA helicase ruvB [Herminiimonas arsenicoxydans] Length = 352 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/321 (58%), Positives = 242/321 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + E+A LRP+ L+E+ GQ + L++FI AA+ R EALDH L GPPGLGKTTLA Sbjct: 21 ANEEAIERALRPKQLDEYVGQEKIRGQLEIFITAARQRREALDHTLLFGPPGLGKTTLAH 80 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 81 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSV+++L FTL+ ATTR G+LTNPL+DRFGI RL FY +L IV Sbjct: 141 QIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPLELTRIV 200 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R + L + ++ A EIA RSRGTPRIA RLLRRVRD+AEV IT+ +ADAAL+ Sbjct: 201 TRSSSLLNAPIDEDGAFEIAKRSRGTPRIANRLLRRVRDYAEVKGNGDITKAMADAALVM 260 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 261 LDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 320 Query: 313 TPRGRLLMPIAWQHLGIDIPH 333 TPRGR+ P+A+ H G+ P Sbjct: 321 TPRGRIATPVAYAHFGVTAPQ 341 >gi|303230229|ref|ZP_07316997.1| Holliday junction DNA helicase RuvB [Veillonella atypica ACS-134-V-Col7a] gi|303231817|ref|ZP_07318533.1| Holliday junction DNA helicase RuvB [Veillonella atypica ACS-049-V-Sch6] gi|302513524|gb|EFL55550.1| Holliday junction DNA helicase RuvB [Veillonella atypica ACS-049-V-Sch6] gi|302515155|gb|EFL57129.1| Holliday junction DNA helicase RuvB [Veillonella atypica ACS-134-V-Col7a] Length = 334 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/316 (60%), Positives = 237/316 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +ED LRP+ E+ GQ EA NL ++I+A K R EALDHVL GPPGLGKTTLA + Sbjct: 14 EEDVWQYSLRPKYFNEYIGQREAKDNLNIYIQATKQRGEALDHVLLYGPPGLGKTTLAGI 73 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGVNFR TSGP I KAGDLAA+LTNL++ DVLFIDEIHRLS VEE+LY AMED+ Sbjct: 74 IANELGVNFRITSGPAIEKAGDLAAILTNLDEHDVLFIDEIHRLSRSVEEVLYSAMEDYA 133 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G+GPSARSV+I+L +FTL+ ATTR G L PL+DRFGI RL +Y+ E+L+ IV Sbjct: 134 LDIIIGKGPSARSVRIDLPKFTLVGATTRAGALAAPLRDRFGIVSRLEYYKQEELEFIVT 193 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + + + A EIA RSRGTPRIA RLL+RVRDFA+V IT +IAD AL RL Sbjct: 194 RAADILNIGIEQAGASEIARRSRGTPRIANRLLKRVRDFAQVVGNGVITADIADEALKRL 253 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +DKMG D++D R L I N+ GGPVGIETI+A +SE RD IED+ EPY++Q GF+ RT Sbjct: 254 HVDKMGLDRIDRRVLKCIIENYDGGPVGIETIAAAVSEERDTIEDVYEPYLMQLGFLGRT 313 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR+ +A+ HLGI Sbjct: 314 PRGRVATKLAYDHLGI 329 >gi|294085861|ref|YP_003552621.1| Holliday junction resolvasome, helicase subunit [Candidatus Puniceispirillum marinum IMCC1322] gi|292665436|gb|ADE40537.1| Holliday junction resolvasome, helicase subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 350 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 193/311 (62%), Positives = 236/311 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L EF GQ NL+ FI AA+ R +A+DH L GPPGLGKTTLAQ+V+ ELGV Sbjct: 20 LRPTSLGEFIGQGNGRQNLETFIHAARDRGDAMDHTLLHGPPGLGKTTLAQIVSSELGVG 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPVIA+AGDLAALLTNL RDVLFIDEIHRL+ +VEE+LYPAMEDFQLDL++GEG Sbjct: 80 FRGTSGPVIARAGDLAALLTNLRPRDVLFIDEIHRLAPVVEEVLYPAMEDFQLDLIIGEG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV+I+L FTL+ ATTR GLLT PL+DRFGI +R+ FY ++L I+ R A GL Sbjct: 140 PSARSVRIDLPPFTLVGATTRSGLLTTPLRDRFGIQMRMQFYTRDELALILHRQAVKLGL 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPR+AGRLLRRVRD A VA +T EIAD AL RL +D G D Sbjct: 200 DLAADGASEIAGRARGTPRVAGRLLRRVRDIAAVAGHNRVTAEIADTALHRLEVDAAGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D RYL+ +A ++ GGPVG+ET++A LSE RD +E++IEPY++Q G + RTPRGR L Sbjct: 260 AMDRRYLSCLAESYAGGPVGVETLAAVLSEQRDVLEEVIEPYLMQTGLLMRTPRGRCLSS 319 Query: 322 IAWQHLGIDIP 332 W +LGI P Sbjct: 320 GGWSYLGITPP 330 >gi|160896674|ref|YP_001562256.1| Holliday junction DNA helicase RuvB [Delftia acidovorans SPH-1] gi|238687184|sp|A9BUG8|RUVB_DELAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|160362258|gb|ABX33871.1| Holliday junction DNA helicase RuvB [Delftia acidovorans SPH-1] Length = 361 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/318 (60%), Positives = 240/318 (75%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E+A LRP+ L+E+ GQ +A L++FI AA+ R EALDHVL GPPGLGKTTL+ ++ Sbjct: 39 EEAMERALRPKLLQEYVGQAKAREQLEIFIGAARKRNEALDHVLLFGPPGLGKTTLSHII 98 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q+ Sbjct: 99 AAELGVNLRQTSGPVLEKPKDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQI 158 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV+R Sbjct: 159 DIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELARIVRR 218 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + DE A EIA RSRGTPRIA RLLRRVRD+A+V +ITRE+AD AL L Sbjct: 219 SAGLLNAPIDDEGAFEIARRSRGTPRIANRLLRRVRDYADVRGDGSITRELADRALAMLD 278 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L + F GGPVG++ I+A + E IED+IEPY+IQQGF+QRTP Sbjct: 279 VDPQGFDIMDRKLLEAVVHRFDGGPVGLDNIAASIGEEAGTIEDVIEPYLIQQGFLQRTP 338 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ A++HLG+ +P Sbjct: 339 RGRMATQAAYRHLGLPVP 356 >gi|323496590|ref|ZP_08101643.1| Holliday junction DNA helicase RuvB [Vibrio sinaloensis DSM 21326] gi|323318336|gb|EGA71294.1| Holliday junction DNA helicase RuvB [Vibrio sinaloensis DSM 21326] Length = 334 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/317 (59%), Positives = 242/317 (76%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +ED +RP+ LE++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA + Sbjct: 17 EEDVIDRAIRPKKLEDYKGQDHVRDQMEIFIKAAQLREEALDHLLIFGPPGLGKTTLANI 76 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+Q Sbjct: 77 VANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQ 136 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+I DL+ IVQ Sbjct: 137 LDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIVQ 196 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A GL++ + A E+A R+RGTPRIA RLLRRVRD+AEV I ++AD AL L Sbjct: 197 RSADCLGLSMEADGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNML 256 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRT Sbjct: 257 DVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRT 316 Query: 314 PRGRLLMPIAWQHLGID 330 PRGR+ A+ H GI+ Sbjct: 317 PRGRIATDRAYLHFGIE 333 >gi|307244276|ref|ZP_07526391.1| Holliday junction DNA helicase RuvB [Peptostreptococcus stomatis DSM 17678] gi|306492426|gb|EFM64464.1| Holliday junction DNA helicase RuvB [Peptostreptococcus stomatis DSM 17678] Length = 337 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 183/329 (55%), Positives = 254/329 (77%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD E +++ ++ +ED DI + LRP++L+E+ GQ ++ L++FI+AAK+R+E+LDHVL Sbjct: 1 MDEERIITSSMKEEDFDIENSLRPKSLDEYLGQEKSKEQLRIFIDAAKSRSESLDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+GVN R TSGP I +AGDLAA+LTNL++ DVLFIDEIHR++ Sbjct: 61 GPPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAAILTNLQENDVLFIDEIHRINRS 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+ +L Sbjct: 121 VEEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLTNPLRDRFGVICKL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 ++Y+ ++L IV+R + + + D+ A EIA RSRGTPRIA RLL+RVRDFA+V Sbjct: 181 DYYKEDELAEIVRRSSGILNAGIMDDGAVEIARRSRGTPRIANRLLKRVRDFAQVKADGN 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT ++ AAL L +D +G D +D + L I F GGPVG++T++A + E R+ IED+ Sbjct: 241 ITDQVTQAALELLGVDSLGLDFVDKKLLMTIIEKFNGGPVGLDTLAASIGEDRNTIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GFI R PRGR+ MP A+QHLGI Sbjct: 301 EPYLLQLGFINRAPRGRIAMPRAYQHLGI 329 >gi|149927725|ref|ZP_01915977.1| Holliday junction DNA helicase B [Limnobacter sp. MED105] gi|149823551|gb|EDM82781.1| Holliday junction DNA helicase B [Limnobacter sp. MED105] Length = 351 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/324 (59%), Positives = 238/324 (73%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 ++ E+A LRP+ L+E+ GQ + L +FI AA+AR EALDHVL GPPGLGKT Sbjct: 11 TKTTPAEEAFERALRPKHLDEYVGQQKIRDQLDIFIAAARARNEALDHVLLFGPPGLGKT 70 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA Sbjct: 71 TLAHILAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPA 130 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 +ED+Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L Sbjct: 131 LEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTPEEL 190 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 IV R A L EIA RSRGTPRIA RLLRRVRD+A+V IT E+ADA Sbjct: 191 SRIVARSANLLDTPAEASGCLEIARRSRGTPRIANRLLRRVRDYAQVKADGIITAEVADA 250 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L +DK+G D +D R L I FGGGPVG+E+++A + E +D IED++EPY+IQQG Sbjct: 251 ALTMLDVDKVGLDPMDRRLLETIIHKFGGGPVGLESVAAAIGEEKDTIEDVLEPYLIQQG 310 Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332 +IQRTPRGR+ + H G+ P Sbjct: 311 YIQRTPRGRIATLNTYAHFGLTAP 334 >gi|52424768|ref|YP_087905.1| Holliday junction DNA helicase B [Mannheimia succiniciproducens MBEL55E] gi|68715412|sp|Q65UP0|RUVB_MANSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|52306820|gb|AAU37320.1| RuvB protein [Mannheimia succiniciproducens MBEL55E] Length = 335 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 191/331 (57%), Positives = 249/331 (75%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S N D I +RP+ L ++ GQ + + +FI+AAK R +ALDH+L Sbjct: 1 MIEADRIISSNAQLGDEYIDRAIRPKLLTDYVGQPQVREQMGIFIQAAKLRQDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY +EDL +IV R A L ++D A+ EIA RSRGTPRIA RLLRRVRDFA+V +A Sbjct: 181 LEFYSVEDLTSIVARSAGCLNLEMSDGASHEIARRSRGTPRIANRLLRRVRDFADVKNAG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ +IA +AL L ID+ GFD LD + L+ + F GGPVG++ ++A + E RD IED+ Sbjct: 241 IISEDIAKSALSMLDIDQAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 +EPY+IQQGF+QRTPRGR+ ++H G+D Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYRHFGLD 331 >gi|261868501|ref|YP_003256423.1| Holliday junction DNA helicase RuvB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413833|gb|ACX83204.1| holliday junction DNA helicase RuvB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 339 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/316 (59%), Positives = 238/316 (75%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ + C +++FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 18 EDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 77 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QL Sbjct: 78 ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 137 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY + DL +IV R Sbjct: 138 DIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSR 197 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + D AA EIA RSRGTPRIA RLLRRVRD+A+V + I+ EIA AAL L Sbjct: 198 SAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNGMISEEIAKAALSMLD 257 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 ID GFD LD + LT + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT Sbjct: 258 IDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTS 317 Query: 315 RGRLLMPIAWQHLGID 330 RGR+ ++H GI+ Sbjct: 318 RGRIATLTTYRHFGIE 333 >gi|329903092|ref|ZP_08273366.1| Holliday junction DNA helicase RuvB [Oxalobacteraceae bacterium IMCC9480] gi|327548501|gb|EGF33170.1| Holliday junction DNA helicase RuvB [Oxalobacteraceae bacterium IMCC9480] Length = 351 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/319 (59%), Positives = 238/319 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L+E+ GQ + L +FI AAK R EALDH L GPPGLGKTTLA + Sbjct: 22 NEEAIERALRPKQLDEYVGQEKIRDQLSIFITAAKQRREALDHTLLFGPPGLGKTTLAHI 81 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 82 IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 141 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSV+++L FTL+ ATTR G+LTNPL+DRFGI RL FY +L IV Sbjct: 142 IDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTATELARIVT 201 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + E A EIA RSRGTPRIA RLLRRVRD+AEV IT+ ADAAL+ L Sbjct: 202 RSASLLNAPIDPEGAFEIAKRSRGTPRIANRLLRRVRDYAEVKSNGDITKATADAALVML 261 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQG++QRT Sbjct: 262 DVDPVGFDLMDRKLLEAVLFKFSGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGYLQRT 321 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ P+A+ H G+ P Sbjct: 322 PRGRIATPLAYTHFGVAAP 340 >gi|90580118|ref|ZP_01235926.1| Holliday junction DNA helicase RuvB [Vibrio angustum S14] gi|90439003|gb|EAS64186.1| Holliday junction DNA helicase RuvB [Vibrio angustum S14] Length = 339 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/335 (57%), Positives = 254/335 (75%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRN--VSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++ + L+S N ++ED I +RP+ L+++ GQ +++FI+AAK R EALDH+ Sbjct: 1 MIEADRLVSSNFETTREDDIIDRAIRPKLLDDYQGQDHVRDQMEIFIKAAKMRDEALDHL 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL Sbjct: 61 LIFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI Sbjct: 121 SPQVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL +Y++EDLK IV R AK GL++ + A E+AMR+RGTPRIA RLLRRVRD+AEV Sbjct: 181 QRLEYYKVEDLKDIVGRSAKCLGLSMEEGGAMEMAMRARGTPRIANRLLRRVRDYAEVKG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 I +IA+ AL L +D GFD +D + L I F GGPVG++ ++A + E +D IE Sbjct: 241 NGHICPDIANKALDMLDVDSSGFDYMDRKLLLAIIEKFMGGPVGLDNLAAAIGEEKDTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 D++EPY+IQQG++QRTPRGR+ A+ H G+D+P Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATHRAYLHFGLDLP 335 >gi|226939020|ref|YP_002794091.1| Holliday junction DNA helicase RuvB [Laribacter hongkongensis HLHK9] gi|254767429|sp|C1D9W9|RUVB_LARHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226713944|gb|ACO73082.1| RuvB [Laribacter hongkongensis HLHK9] Length = 345 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 197/322 (61%), Positives = 244/322 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+A LRP+ L+++ GQ +A L++FIEAAK R EALDHVL GPPGLGKTTLA Sbjct: 23 SQEEALERALRPKALDDYVGQKKAREQLEIFIEAAKKRGEALDHVLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +++RELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IISRELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 143 QIDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELTRIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + + +E A E+A RSRGTPRIA RLLRRVRDFAEV +T +ADAAL Sbjct: 203 RRSAGLLEVQLGEEGAFEVARRSRGTPRIANRLLRRVRDFAEVRADGVVTAAVADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D + L + FGGGPVG++ ++A + E D IED+IEPY+IQQG++QR Sbjct: 263 LDVDPAGLDVMDRKLLAAVLEKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGYLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334 TPRGR+ +AW H G P R Sbjct: 323 TPRGRMATALAWTHFGFVPPER 344 >gi|325981223|ref|YP_004293625.1| Holliday junction DNA helicase RuvB [Nitrosomonas sp. AL212] gi|325530742|gb|ADZ25463.1| Holliday junction DNA helicase RuvB [Nitrosomonas sp. AL212] Length = 348 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/317 (60%), Positives = 239/317 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+ LRP L+E+ GQ + L++FIEAA+ R EALDHVL GPPGLGKTTLA Sbjct: 15 SQEEILERALRPTQLDEYVGQEKIRGQLQIFIEAARNRREALDHVLLFGPPGLGKTTLAH 74 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS IVEEILYPA+ED+ Sbjct: 75 IIAREMGVNLRQTSGPVLERPGDLAALLTNLEPNDVLFIDEIHRLSPIVEEILYPALEDY 134 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 135 QLDIMIGEGPAARSVKLDLPSFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTSEELGKIV 194 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L + ++ + A EIA RSRGTPRI RLLRRVRD+A+V ITR +ADAAL Sbjct: 195 TRSAGLLKVEISSDGALEIACRSRGTPRIVNRLLRRVRDYAQVKADGHITRLVADAALSM 254 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +G D +D + L + F GGPVG++ ++A +SE RD IED++EPY+IQQGF++R Sbjct: 255 LDVDAIGLDVMDRKLLLAVLEKFSGGPVGVDNLAAAISEERDTIEDVLEPYLIQQGFLKR 314 Query: 313 TPRGRLLMPIAWQHLGI 329 T RGR+ A+QH GI Sbjct: 315 TARGRVATTAAYQHFGI 331 >gi|260779156|ref|ZP_05888048.1| holliday junction DNA helicase RuvB [Vibrio coralliilyticus ATCC BAA-450] gi|260605320|gb|EEX31615.1| holliday junction DNA helicase RuvB [Vibrio coralliilyticus ATCC BAA-450] Length = 334 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/318 (59%), Positives = 240/318 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED +RP+ L ++ GQ +++FI+AA R EALDH+L GPPGLGKTTLA Sbjct: 16 KEEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAANLREEALDHLLIFGPPGLGKTTLAN 75 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+ Sbjct: 76 IVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDY 135 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+I DL+ IV Sbjct: 136 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQHIV 195 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I +IAD AL Sbjct: 196 QRSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADIADKALNM 255 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QR Sbjct: 256 LDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQR 315 Query: 313 TPRGRLLMPIAWQHLGID 330 TPRGR+ A+ H GI+ Sbjct: 316 TPRGRIATDRAYLHFGIE 333 >gi|302879786|ref|YP_003848350.1| Holliday junction DNA helicase RuvB [Gallionella capsiferriformans ES-2] gi|302582575|gb|ADL56586.1| Holliday junction DNA helicase RuvB [Gallionella capsiferriformans ES-2] Length = 351 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/318 (59%), Positives = 241/318 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QE+A LRP+ L+E+ GQ + L++FI+AAK R E LDHVL GPPGLGKTTLAQ+ Sbjct: 22 QEEALERALRPKQLDEYVGQEKIREQLEIFIQAAKQRQEPLDHVLLFGPPGLGKTTLAQI 81 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 82 IAREMGVNLRHTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDYQ 141 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L+ IV Sbjct: 142 IDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTPEELQRIVM 201 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R + L + ++ + A EIA RSRGTPRIA RLLRRVRD+A+V TR +ADAAL L Sbjct: 202 RSSGLLEMNLSHDGAMEIARRSRGTPRIANRLLRRVRDYADVKAGGDATRRVADAALTML 261 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D G D +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQG++QRT Sbjct: 262 DVDSQGLDVMDRKLLLTIIEKFMGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 321 Query: 314 PRGRLLMPIAWQHLGIDI 331 PRGR+ A+ H G+ + Sbjct: 322 PRGRMATANAYLHFGLTV 339 >gi|293390517|ref|ZP_06634851.1| holliday junction DNA helicase RuvB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951051|gb|EFE01170.1| holliday junction DNA helicase RuvB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 337 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/316 (59%), Positives = 238/316 (75%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ + C +++FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 16 EDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QL Sbjct: 76 ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY + DL +IV R Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + D AA EIA RSRGTPRIA RLLRRVRD+A+V + I+ EIA AAL L Sbjct: 196 SAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNGMISEEIAKAALSMLD 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 ID GFD LD + LT + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT Sbjct: 256 IDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTS 315 Query: 315 RGRLLMPIAWQHLGID 330 RGR+ ++H GI+ Sbjct: 316 RGRIATLTTYRHFGIE 331 >gi|206890403|ref|YP_002248714.1| holliday junction DNA helicase RuvB [Thermodesulfovibrio yellowstonii DSM 11347] gi|259495680|sp|B5YKE9|RUVB_THEYD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|206742341|gb|ACI21398.1| holliday junction DNA helicase RuvB [Thermodesulfovibrio yellowstonii DSM 11347] Length = 325 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 191/322 (59%), Positives = 244/322 (75%), Gaps = 1/322 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + E DI+L RP++L+EF GQ + N++VFI+AA R E LDHVLF GPPGLGKTTLA Sbjct: 3 NNELLDITL-RPKSLKEFIGQKKIKDNIEVFIKAALIRQEPLDHVLFCGPPGLGKTTLAT 61 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 V+A ELGVN +STSGPV+ +AGD+AA+LTNL DRD+LFIDEIHRL +VEEILYPAMEDF Sbjct: 62 VIANELGVNIKSTSGPVLERAGDVAAILTNLSDRDILFIDEIHRLPRMVEEILYPAMEDF 121 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 LD++VG+GPSARS+KINL RFTLI ATTR GL+T+PL+DRFG+ RL FY E+LK IV Sbjct: 122 TLDIIVGQGPSARSIKINLPRFTLIGATTRTGLITSPLRDRFGVVFRLEFYNSEELKEIV 181 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A++ G+ + + AA EIA RSRGTPR+A RLL+R+RDFA+V I +IA AL+ Sbjct: 182 KRSARILGILIEENAATEIARRSRGTPRVANRLLKRIRDFAQVKDKDIIDLQIAQEALIA 241 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 + +D G D +D + L I F GGP GIE+I+A L E +D IED+ EPY++Q+GFI+R Sbjct: 242 MDVDDYGLDDMDRKILLTIIEKFNGGPAGIESIAASLREDKDTIEDVYEPYLMQEGFIER 301 Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334 T RGR+ A++ L IP R Sbjct: 302 TARGRVATRFAYEVLKRKIPER 323 >gi|171464162|ref|YP_001798275.1| Holliday junction DNA helicase RuvB [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193700|gb|ACB44661.1| Holliday junction DNA helicase RuvB [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 356 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/311 (60%), Positives = 235/311 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ +A + L++FI A +AR EALDHVL GPPGLGKTTLA ++ARELGVN Sbjct: 38 LRPKQLNEYVGQTKARAQLEIFISATRARQEALDHVLLFGPPGLGKTTLAHIIARELGVN 97 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ + GDLAALLTNLE+ DVLFIDEIHRLS +VEEILYPA+ED+ LD+M+GEG Sbjct: 98 LRQTSGPVLDRPGDLAALLTNLEENDVLFIDEIHRLSPVVEEILYPALEDYSLDIMIGEG 157 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVKI+L FTLI ATTR G+LTNPL+DRFGI RL FY ++L I+ R L Sbjct: 158 PAARSVKIDLKPFTLIGATTRAGMLTNPLRDRFGIVARLEFYTTKELTKIINRSTSLLKA 217 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + + EIA R+RGTPRIA RLLRRVRD+AEV TIT+ +ADAAL L +D GFD Sbjct: 218 DIDPDGSIEIAKRARGTPRIANRLLRRVRDYAEVKGTGTITKAMADAALKMLDVDPSGFD 277 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT RGR+ Sbjct: 278 VMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRTSRGRVATR 337 Query: 322 IAWQHLGIDIP 332 A++H G+ P Sbjct: 338 QAYEHFGLTPP 348 >gi|1183842|dbj|BAA11819.1| Holliday junction specific DNA helicase [Pseudomonas aeruginosa] Length = 352 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 191/313 (61%), Positives = 237/313 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ +++FI AA+ R EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAALLTNLE DVLF+DEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ RS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY +EDL TIV R A + GL Sbjct: 144 PAGRSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR IAD AL L +D+ GFD Sbjct: 204 EIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQGDITRVIADKALNLLDVDERGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R L + F GGPVGI+ ++A LSE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPKR 336 >gi|315645786|ref|ZP_07898907.1| Holliday junction DNA helicase RuvB [Paenibacillus vortex V453] gi|315278547|gb|EFU41861.1| Holliday junction DNA helicase RuvB [Paenibacillus vortex V453] Length = 335 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 197/334 (58%), Positives = 248/334 (74%), Gaps = 3/334 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++S N+ ++ + L LRPR L E+ GQ + NLKV+IEAAK R EALDHVL Sbjct: 1 MDDR--IISANLMMDEQAVELSLRPRYLAEYIGQNQVKENLKVYIEAAKMRNEALDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL Sbjct: 59 YGPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE++YPAMEDF LD+M+G+GPSARSV+++L FTLI ATTR GLL+ PL+DRFG+ R Sbjct: 119 TVEEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY +++L IV R A L G+ + +AA EIA+RSRGTPRIA RLL+RVRD+A+V Sbjct: 179 LEFYTVDELSYIVSRNADLLGIEILGDAADEIALRSRGTPRIANRLLKRVRDYAQVRGDG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT IA AL L ID MG D +D + L + R+F GGPVG++TI+A + E IED+ Sbjct: 239 MITPAIAQEALKMLQIDPMGLDFIDHKMLNAMIRSFRGGPVGLDTIAATIGEESQTIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY++Q GF+QRTPRGR++ P A+QHLGI P Sbjct: 299 YEPYLLQIGFLQRTPRGRVVTPTAYQHLGIPFPE 332 >gi|261405409|ref|YP_003241650.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. Y412MC10] gi|329926743|ref|ZP_08281151.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. HGF5] gi|261281872|gb|ACX63843.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. Y412MC10] gi|328938943|gb|EGG35311.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. HGF5] Length = 335 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 196/334 (58%), Positives = 248/334 (74%), Gaps = 3/334 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++S N+ ++ + L LRPR L E+ GQ + NLKV+IEAAK R EALDHVL Sbjct: 1 MDDR--IISANLMMDEQAVELSLRPRYLAEYIGQNQVKENLKVYIEAAKMRNEALDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL Sbjct: 59 YGPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE++YPAMEDF LD+M+G+GPSARSV+++L FTLI ATTR GLL+ PL+DRFG+ R Sbjct: 119 TVEEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY +++L IV R A L G+ + EAA EIA+RSRGTPRIA RLL+RVRD+A+V Sbjct: 179 LEFYTVDELSYIVSRNADLLGIEILGEAAEEIALRSRGTPRIANRLLKRVRDYAQVRGDG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT IA AL L ID MG D +D + L + ++F GGPVG++TI+A + E IED+ Sbjct: 239 MITPSIAQEALKMLQIDPMGLDFIDHKMLNAMIKSFRGGPVGLDTIAATIGEESQTIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY++Q G++QRTPRGR++ P A+QHLGI P Sbjct: 299 YEPYLLQIGYLQRTPRGRVVTPTAYQHLGIPFPE 332 >gi|118580736|ref|YP_901986.1| Holliday junction DNA helicase RuvB [Pelobacter propionicus DSM 2379] gi|166231534|sp|A1ARF8|RUVB_PELPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|118503446|gb|ABK99928.1| Holliday junction DNA helicase RuvB [Pelobacter propionicus DSM 2379] Length = 338 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/313 (59%), Positives = 240/313 (76%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP++L+++ GQ + NL++FIEAA+ R EALDHVL GPPGLGKTTLA +VA E+G Sbjct: 18 STLRPKSLDDYIGQEKIKGNLRLFIEAARGRGEALDHVLLYGPPGLGKTTLANIVACEMG 77 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 VN +STSGPVI + GDLAA+LTNLE DVLFIDEIHRLS +VEEILYPAMEDFQLD+++G Sbjct: 78 VNLKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILYPAMEDFQLDIIIG 137 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GPSARS+K++L RFTL+ ATTR GLL++PL+DRFG+ R++FY ++L TI+ R +++ Sbjct: 138 QGPSARSIKLDLPRFTLVGATTRAGLLSSPLRDRFGVISRMDFYTHDELATIITRSSRIL 197 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 G+ + A E++ RSRGTPRIA RLLRRVRDFA+V ITR++ L L ID+MG Sbjct: 198 GMEIEPRGADELSRRSRGTPRIANRLLRRVRDFAQVRADGVITRQVVKETLALLEIDEMG 257 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 FD +D L I F GGPVG++TI+A +SE D IED+ EPYMIQ GF+ RTPRGR+ Sbjct: 258 FDHMDRMILLTIIDKFSGGPVGLDTIAAAISEESDTIEDVYEPYMIQNGFLNRTPRGRVA 317 Query: 320 MPIAWQHLGIDIP 332 A++H G +P Sbjct: 318 TLAAYEHFGRSVP 330 >gi|325917785|ref|ZP_08179969.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas vesicatoria ATCC 35937] gi|325536001|gb|EGD07813.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas vesicatoria ATCC 35937] Length = 359 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 195/332 (58%), Positives = 246/332 (74%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ + S ++DA + +RP+ L ++ GQ + ++I+AAKAR EA+DHVL Sbjct: 14 MTEQRIIASSATREDDAADASIRPKRLADYLGQQPVREQMDIYIQAAKARGEAMDHVLIF 73 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ V+A ELGVN RSTSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS + Sbjct: 74 GPPGLGKTTLSHVIANELGVNLRSTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 133 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL Sbjct: 134 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 193 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +L IV R A + G+ T E A EIA R+RGTPRIA RLLRRVRD+A+V A Sbjct: 194 EFYSPAELTRIVIRSAAILGIDCTPEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGH 253 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +A AA+ L +D GFD+LD R L I +F GGPVG+E+++A LSE R +ED+I Sbjct: 254 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 313 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQQGF+ RT RGR++ P A+ HLG+ P Sbjct: 314 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPP 345 >gi|299533021|ref|ZP_07046408.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni S44] gi|298719245|gb|EFI60215.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni S44] Length = 364 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/311 (61%), Positives = 235/311 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ +A L++FI AAK R+EALDHVL GPPGLGKTTL+ ++A ELGVN Sbjct: 49 LRPKQLDEYVGQAKAREQLEIFIGAAKKRSEALDHVLLFGPPGLGKTTLSHIIAAELGVN 108 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q+D+M+GEG Sbjct: 109 LRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEG 168 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV+R A L Sbjct: 169 PAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTSEELSRIVRRSAGLLNA 228 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E EIA RSRGTPRIA RLLRRVRD+A+V ITREIAD AL L +D GFD Sbjct: 229 PIDAEGCFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITREIADRALAMLDVDPQGFD 288 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + F GGPVG++ I+A + E IED+IEPY+IQQGF+QRTPRGR+ Sbjct: 289 IMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGFLQRTPRGRMATQ 348 Query: 322 IAWQHLGIDIP 332 A++HLG+ +P Sbjct: 349 AAYRHLGLPVP 359 >gi|259908220|ref|YP_002648576.1| Holliday junction DNA helicase RuvB [Erwinia pyrifoliae Ep1/96] gi|224963842|emb|CAX55344.1| Holliday junction ATP-dependent DNA helicase [Erwinia pyrifoliae Ep1/96] gi|283478150|emb|CAY74066.1| Holliday junction ATP-dependent DNA helicase ruvB [Erwinia pyrifoliae DSM 12163] gi|310767865|gb|ADP12815.1| Holliday junction DNA helicase RuvB [Erwinia sp. Ejp617] Length = 334 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/318 (59%), Positives = 244/318 (76%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 +++E+ +RP+ LEE+ GQ +++FI+AA+ R +ALDH+L GPPGLGKTTLA Sbjct: 13 ITEEEVIDRAIRPKMLEEYVGQPVVREQMEIFIKAAQMRGDALDHLLIFGPPGLGKTTLA 72 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED Sbjct: 73 NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY +EDL+ I Sbjct: 133 YQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYRVEDLQHI 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V R A GL ++DE A EIA R+RGTPRIA RLLRRVRDFAEV A ++ ++A AL Sbjct: 193 VGRSAACLGLPLSDEGALEIARRARGTPRIANRLLRRVRDFAEVRAAGEMSGDVACKALD 252 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L++D GFD +D + L I F GGPVG++ ++A + E R+ IED++EPY+IQQGFIQ Sbjct: 253 MLSVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFIQ 312 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTPRGRL A++H GI Sbjct: 313 RTPRGRLATQHAYKHFGI 330 >gi|322420883|ref|YP_004200106.1| Holliday junction DNA helicase RuvB [Geobacter sp. M18] gi|320127270|gb|ADW14830.1| Holliday junction DNA helicase RuvB [Geobacter sp. M18] Length = 337 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/322 (59%), Positives = 244/322 (75%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 +S S+ED + LRPR L ++ GQ +A NL +FI+AA+ R EALDHVL GPPGLG Sbjct: 4 FISAERSEEDLLEASLRPRALADYVGQEKAKGNLGLFIDAARGRGEALDHVLLYGPPGLG 63 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A E+GV+ +STSGPVI + GDLAA+LTNLE DVLFIDEIHRLS +VEEILY Sbjct: 64 KTTLANIIACEMGVSIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILY 123 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+ RL FY E Sbjct: 124 PAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTHE 183 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L I+ R +++ G+A+ + A E+A RSRGTPRIA RLLRRVRDFA+V ITR++A Sbjct: 184 ELAFIITRSSRIFGMAIAPDGALELARRSRGTPRIANRLLRRVRDFAQVRADGVITRDVA 243 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L ID MGFD +D L I FGGGPVG++TI+A +SE D IED+ EP++IQ Sbjct: 244 DQALALLEIDDMGFDTMDRAILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLIQ 303 Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328 GF+ RTPRGR+ A+ H G Sbjct: 304 NGFLNRTPRGRVATAAAYSHFG 325 >gi|77360813|ref|YP_340388.1| Holliday junction DNA helicase B [Pseudoalteromonas haloplanktis TAC125] gi|97190221|sp|Q3IIJ2|RUVB_PSEHT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|76875724|emb|CAI86945.1| Holliday junction helicase, subunit B [Pseudoalteromonas haloplanktis TAC125] Length = 335 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/316 (59%), Positives = 238/316 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ED+ +RP+ L ++ GQ +++FIEAA++R EALDH+L GPPGLGKTTLA + Sbjct: 15 NEDSIDRAIRPKLLADYRGQPHVKQQMEIFIEAARSRGEALDHLLIFGPPGLGKTTLANI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA EL VN ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS VEEILYPAMED+Q Sbjct: 75 VANELQVNIKATSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSPQVEEILYPAMEDYQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY +EDL IV Sbjct: 135 LDIMIGEGPAARSIKLDLPSFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLSYIVG 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + DE A EIA RSRGTPRIA RLLRRVRD+ +V T+ E+A+ AL + Sbjct: 195 RSAHFLDLEMCDEGAVEIAKRSRGTPRIANRLLRRVRDYTQVKSDGTVNAEVAELALNMI 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +DK GFD +D +YL I F GGPVG++ I+A + E ++ IED+IEP++IQQGFIQRT Sbjct: 255 DVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNIAAAIGEEKETIEDVIEPFLIQQGFIQRT 314 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR++ A+ H G+ Sbjct: 315 PRGRIVSDNAYHHFGL 330 >gi|227111607|ref|ZP_03825263.1| Holliday junction DNA helicase RuvB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 336 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/330 (57%), Positives = 250/330 (75%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + E+ I +RP+ L E+ GQ + +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRLISADAVPEEEFIDRAIRPKLLNEYVGQPQVREQMEIFIQAARKRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNMRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++EDL+ IV R A+ GL +T E A E+A R+RGTPRIA RLLRRVRDF+EV Sbjct: 181 LEFYKVEDLQYIVSRSAQCLGLDLTSEGALEVARRARGTPRIANRLLRRVRDFSEVKSEG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT ++A AL LA+D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AITGDVATQALDMLAVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EP++IQQGFIQRTPRGR+ A++H G+ Sbjct: 301 LEPFLIQQGFIQRTPRGRMATQHAYRHFGL 330 >gi|89075788|ref|ZP_01162176.1| Holliday junction DNA helicase RuvB [Photobacterium sp. SKA34] gi|89048520|gb|EAR54095.1| Holliday junction DNA helicase RuvB [Photobacterium sp. SKA34] Length = 339 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/336 (57%), Positives = 254/336 (75%), Gaps = 3/336 (0%) Query: 1 MMDREGLLSRN--VSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++ + L+S N ++ED I +RP+ L+++ GQ +++FI+AAK R EALDH+ Sbjct: 1 MIEADRLVSGNFETTREDDIIDRAIRPKLLDDYQGQDHVRDQMEIFIKAAKMRDEALDHL 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL Sbjct: 61 LIFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI Sbjct: 121 SPQVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL +Y++EDLK IV R AK GL++ + A E+AMR+RGTPRIA RLLRRVRD+AEV Sbjct: 181 QRLEYYKVEDLKDIVGRSAKCLGLSMEEGGAMEMAMRARGTPRIANRLLRRVRDYAEVKG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 I +IA+ AL L +D GFD +D + L I F GGPVG++ ++A + E +D IE Sbjct: 241 NGHICPDIANKALDMLDVDSSGFDYMDRKLLLAIIEKFMGGPVGLDNLAAAIGEEKDTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 D++EPY+IQQG++QRTPRGR+ A+ H G+D+P Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATHRAYLHFGLDLPE 336 >gi|325929362|ref|ZP_08190492.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas perforans 91-118] gi|325540274|gb|EGD11886.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas perforans 91-118] Length = 346 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 192/332 (57%), Positives = 248/332 (74%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ + S + ++DA + +RP+ L ++ GQ ++++I+AAKAR EA+DHVL Sbjct: 1 MTEQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIF 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS + Sbjct: 61 GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY ++L IV R A + G+ T E A EIA R+RGTPRI RLLRRVRD+A+V A Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPEGAAEIARRARGTPRIGNRLLRRVRDYAQVKAAGH 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +A AA+ L +D GFD+LD R L I +F GGPVG+E+++A LSE R +ED+I Sbjct: 241 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQQGF+ RT RGR++ P A+ HLG+ +P Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKVP 332 >gi|330950608|gb|EGH50868.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae Cit 7] Length = 353 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/313 (60%), Positives = 240/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R+EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY I DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR+ AD AL L +D+ GFD Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVGI++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPSR 336 >gi|83718669|ref|YP_441794.1| Holliday junction DNA helicase RuvB [Burkholderia thailandensis E264] gi|167580614|ref|ZP_02373488.1| Holliday junction DNA helicase B [Burkholderia thailandensis TXDOH] gi|167618720|ref|ZP_02387351.1| Holliday junction DNA helicase B [Burkholderia thailandensis Bt4] gi|257137960|ref|ZP_05586222.1| Holliday junction DNA helicase RuvB [Burkholderia thailandensis E264] gi|97189952|sp|Q2SZ55|RUVB_BURTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|83652494|gb|ABC36557.1| Holliday junction DNA helicase RuvB [Burkholderia thailandensis E264] Length = 356 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 196/320 (61%), Positives = 242/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+A LRPR L+E+ GQ + L++FIEAAK RAEALDHVL GPPGLGKTTLA Sbjct: 20 SHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRAEALDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ E L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRD+AEV IT +ADAAL Sbjct: 200 RRSAALLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLATP 339 >gi|7443650|pir||JC5477 DNA-binding protein ruvB - Pseudomonas aeruginosa Length = 352 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/313 (61%), Positives = 237/313 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ +++FI AA+ R EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAALLTNLE DVLF+DEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ RS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY +EDL TIV R A + GL Sbjct: 144 PAVRSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR IAD AL L +D+ GFD Sbjct: 204 EIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQGDITRVIADKALNLLDVDERGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R L + F GGPVGI+ ++A LSE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPKR 336 >gi|323495171|ref|ZP_08100256.1| Holliday junction DNA helicase RuvB [Vibrio brasiliensis LMG 20546] gi|323310611|gb|EGA63790.1| Holliday junction DNA helicase RuvB [Vibrio brasiliensis LMG 20546] Length = 334 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/318 (59%), Positives = 240/318 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA Sbjct: 16 KEEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLAN 75 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+ Sbjct: 76 IVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDY 135 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+I DL+ IV Sbjct: 136 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIV 195 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I E+AD AL Sbjct: 196 QRSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAEVADKALNM 255 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QR Sbjct: 256 LDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQR 315 Query: 313 TPRGRLLMPIAWQHLGID 330 TPRGR+ A+ H GI+ Sbjct: 316 TPRGRIATDRAYLHFGIE 333 >gi|330445533|ref|ZP_08309185.1| Holliday junction DNA helicase RuvB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489724|dbj|GAA03682.1| Holliday junction DNA helicase RuvB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 339 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 193/336 (57%), Positives = 253/336 (75%), Gaps = 3/336 (0%) Query: 1 MMDREGLLSRN--VSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++ + L+S N ++ED I +RP+ L+++ GQ +++FI+AAK R EALDH+ Sbjct: 1 MIEADRLVSGNFETTREDDIIDRAIRPKLLDDYQGQDHVRDQMEIFIKAAKLRDEALDHL 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL Sbjct: 61 LIFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI Sbjct: 121 SPQVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL +Y++EDLK IV R A GL++ + A E+AMR+RGTPRIA RLLRRVRD+AEV Sbjct: 181 QRLEYYKVEDLKDIVSRSANCLGLSMEEAGALEVAMRARGTPRIANRLLRRVRDYAEVKG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 I +IA+ AL L +D GFD +D + L I F GGPVG++ ++A + E +D IE Sbjct: 241 NGHICPDIANKALDMLDVDSSGFDYMDRKLLLAIIEKFMGGPVGLDNLAAAIGEEKDTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 D++EPY+IQQG++QRTPRGR+ A+ H G+D+P Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATHRAYLHFGLDLPE 336 >gi|302187156|ref|ZP_07263829.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. syringae 642] Length = 353 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/313 (60%), Positives = 240/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R+EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY I DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR+ AD AL L +D+ GFD Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVGI++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPSR 336 >gi|264680419|ref|YP_003280329.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni CNB-2] gi|262210935|gb|ACY35033.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni CNB-2] Length = 364 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/311 (61%), Positives = 234/311 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ +A L++FI AAK R+EALDHVL GPPGLGKTTL+ ++A ELGVN Sbjct: 49 LRPKQLDEYVGQAKAREQLEIFIGAAKKRSEALDHVLLFGPPGLGKTTLSHIIAAELGVN 108 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q+D+M+GEG Sbjct: 109 LRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEG 168 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV+R A L Sbjct: 169 PAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTSEELSRIVRRSAGLLNA 228 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E EIA RSRGTPRIA RLLRRVRD+A+V ITREIAD AL L +D GFD Sbjct: 229 PIDAEGCFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITREIADKALAMLDVDPQGFD 288 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + F GGPVG++ I+A + E IED+IEPY+IQQGF+QRTPRGR+ Sbjct: 289 IMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGFLQRTPRGRMATQ 348 Query: 322 IAWQHLGIDIP 332 A++HLG+ P Sbjct: 349 AAYRHLGLQPP 359 >gi|237809450|ref|YP_002893890.1| Holliday junction DNA helicase RuvB [Tolumonas auensis DSM 9187] gi|259495681|sp|C4LBN0|RUVB_TOLAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|237501711|gb|ACQ94304.1| Holliday junction DNA helicase RuvB [Tolumonas auensis DSM 9187] Length = 337 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/323 (58%), Positives = 245/323 (75%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 +++E+ +RP+ L ++ GQ + S +++FIEAA+ R+EALDHVL GPPGLGKTTLA Sbjct: 13 ITEEEQLDRAIRPKMLSDYRGQDQVRSQMEIFIEAARRRSEALDHVLIFGPPGLGKTTLA 72 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA E+GVN ++TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEE+LYPAMED Sbjct: 73 NIVANEMGVNIKTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +QLD+M+GEGP+ARS+K+ L FTLI ATTR G LT+PL+DRFGI RL FY++EDL I Sbjct: 133 YQLDIMIGEGPAARSIKLELPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYKVEDLAHI 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V R A + GL++ + A EIA R+RGTPRIA RLLRRVRDFAE+ I+ +IA AL Sbjct: 193 VGRSADVLGLSLDQQGAFEIAKRARGTPRIANRLLRRVRDFAEIRSDGHISDQIAAQALD 252 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L +D GFD +D + L I F GGPVG++ ++A + E ++ IED++EPY+IQQGF+Q Sbjct: 253 MLDVDNAGFDYMDRKLLLAIIDKFLGGPVGVDNLAAAIGEEKETIEDVLEPYLIQQGFLQ 312 Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334 RTPRGR+ P A+ H G+ P R Sbjct: 313 RTPRGRIATPRAYLHFGLTTPER 335 >gi|148263481|ref|YP_001230187.1| Holliday junction DNA helicase RuvB [Geobacter uraniireducens Rf4] gi|189046034|sp|A5G9Y2|RUVB_GEOUR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|146396981|gb|ABQ25614.1| Holliday junction DNA helicase subunit RuvB [Geobacter uraniireducens Rf4] Length = 338 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/327 (57%), Positives = 249/327 (76%), Gaps = 1/327 (0%) Query: 8 LSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 ++ +++ +DA I + LRPR L+++ GQ +A NL++FI+AA+ R EALDHVL GPPGLG Sbjct: 5 ITPSITDDDALIEATLRPRALDDYVGQEKAKGNLRIFIDAARGRDEALDHVLLYGPPGLG 64 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE DVLFIDEIHRLS +VEEILY Sbjct: 65 KTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEAHDVLFIDEIHRLSHVVEEILY 124 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+ RL FY E Sbjct: 125 PAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTDE 184 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L I+ R A++ G+ + + A E+A RSRGTPRIA RLLRRVRDFA+V IT ++ Sbjct: 185 ELAFIITRSARILGMEIKTDGAAEMARRSRGTPRIANRLLRRVRDFAQVKADGVITMKVV 244 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 AL L ID+MGFDQ+D L I FGGGPVG++TI+A +SE D IED+ EP++IQ Sbjct: 245 QDALALLEIDEMGFDQMDRMILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLIQ 304 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 GF+ RTPRGR+ A+ H G +P Sbjct: 305 NGFLNRTPRGRVATKAAYLHFGRIVPE 331 >gi|325579042|ref|ZP_08148998.1| crossover junction ATP-dependent DNA helicase RuvB [Haemophilus parainfluenzae ATCC 33392] gi|325159277|gb|EGC71411.1| crossover junction ATP-dependent DNA helicase RuvB [Haemophilus parainfluenzae ATCC 33392] Length = 335 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/333 (57%), Positives = 247/333 (74%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S V ED +RP+ L ++ GQ + + +FI+AAK R +ALDH+L Sbjct: 1 MIEADRIISSQVKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY +EDL +IV R A L + D+AA E+A RSRGTPRIA RLLRRVRDFA+V + Sbjct: 181 LEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ +IA AL L +D GFD LD + LT + F GGPVG++ ++A + E RD IED+ Sbjct: 241 IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQGF+QRTPRGR+ + ++H G+ P Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSLTYRHFGLQKP 333 >gi|312882587|ref|ZP_07742327.1| Holliday junction DNA helicase RuvB [Vibrio caribbenthicus ATCC BAA-2122] gi|309369747|gb|EFP97259.1| Holliday junction DNA helicase RuvB [Vibrio caribbenthicus ATCC BAA-2122] Length = 334 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/322 (58%), Positives = 243/322 (75%), Gaps = 2/322 (0%) Query: 11 NVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 N +D D+ +RP+ L ++ GQ +++FI+AA+ R+EALDH+L GPPGLGKT Sbjct: 12 NTVYKDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQMRSEALDHLLIFGPPGLGKT 71 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPA Sbjct: 72 TLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPA 131 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+I DL Sbjct: 132 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKISDL 191 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 +TIVQR A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I +IAD Sbjct: 192 QTIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADIADK 251 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L +D GFD +D + L I F GGPVG++ ++A + E +D IED++EPY+IQQG Sbjct: 252 ALNMLDVDAQGFDYMDRKLLLAIMEKFSGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQG 311 Query: 309 FIQRTPRGRLLMPIAWQHLGID 330 ++QRTPRGR+ A+ H GI+ Sbjct: 312 YLQRTPRGRIATDRAYLHFGIE 333 >gi|330936717|gb|EGH40904.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. pisi str. 1704B] Length = 353 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 240/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R+EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLSLADYIGQSTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY I DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR+ AD AL L +D+ GFD Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPSR 336 >gi|332285260|ref|YP_004417171.1| holliday junction DNA helicase [Pusillimonas sp. T7-7] gi|330429213|gb|AEC20547.1| holliday junction DNA helicase [Pusillimonas sp. T7-7] Length = 339 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 192/319 (60%), Positives = 233/319 (73%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ED+ LRPR L+E+ GQ L++FI AAK R EALDHVL GPPGLGKTTLA + Sbjct: 9 NEDSIERALRPRELKEYIGQHRVREQLEIFIAAAKNRGEALDHVLLFGPPGLGKTTLAHI 68 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+GV R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+EDFQ Sbjct: 69 VAHEMGVQLRQTSGPVLERAGDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDFQ 128 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+++GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY EDL IV Sbjct: 129 IDILIGEGPAARSVKIDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTEDLTHIVT 188 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A+L T + A EIA R+RGTPRIA RLLRRVRD+AEV I +A AAL L Sbjct: 189 RSAQLLNAHTTPDGAAEIARRARGTPRIANRLLRRVRDYAEVRADGNIDTTVAGAALAML 248 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D G D +D + L I F GGPVG+++++A + E RD IED+IEP++IQQG++QRT Sbjct: 249 EVDPQGLDLMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVIEPFLIQQGYLQRT 308 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR W+HLG+ P Sbjct: 309 PRGRTATQTTWRHLGLTPP 327 >gi|261378742|ref|ZP_05983315.1| holliday junction DNA helicase RuvB [Neisseria cinerea ATCC 14685] gi|269144897|gb|EEZ71315.1| holliday junction DNA helicase RuvB [Neisseria cinerea ATCC 14685] Length = 343 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/319 (61%), Positives = 243/319 (76%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+ LRP+TL+++ GQ +A L +FI+AAK R EALDH L GPPGLGKTTLA Sbjct: 23 SQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY+ +DL TIV Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYQNQDLATIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L + +E A E+A RSRGTPRIA RLLRRVRDFA+V + I +ADAAL Sbjct: 203 SRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L I F GGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAQGLDVMDRKFLEAILHKFSGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ A+ H G+ + Sbjct: 323 TPRGRVATERAYLHFGLPV 341 >gi|251789855|ref|YP_003004576.1| Holliday junction DNA helicase RuvB [Dickeya zeae Ech1591] gi|247538476|gb|ACT07097.1| Holliday junction DNA helicase RuvB [Dickeya zeae Ech1591] Length = 336 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/322 (59%), Positives = 243/322 (75%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 VS E+ +RP+ L E+ GQ +++FIEAA+ R +ALDH+L GPPGLGKTTLA Sbjct: 13 VSDEEVLDRAIRPKLLSEYVGQPVVREQMEIFIEAARKRGDALDHLLIFGPPGLGKTTLA 72 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA E+GVN R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEE+LYPAMED Sbjct: 73 NIVANEMGVNLRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY++ DL+ I Sbjct: 133 YQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHI 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 VQR A+ GL +T + A E+A RSRGTPRIA RLLRRVRDF+EV I+ E+A AL Sbjct: 193 VQRSAQCLGLEMTVDGALEVARRSRGTPRIANRLLRRVRDFSEVKSDGAISAEVAIQALD 252 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 LA+D GFD +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+Q Sbjct: 253 MLAVDSEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQ 312 Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333 RTPRGR+ A++H G+ H Sbjct: 313 RTPRGRIATQHAYRHFGLTREH 334 >gi|149191832|ref|ZP_01870069.1| Holliday junction DNA helicase B [Vibrio shilonii AK1] gi|148834350|gb|EDL51350.1| Holliday junction DNA helicase B [Vibrio shilonii AK1] Length = 335 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/316 (60%), Positives = 238/316 (75%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA +V Sbjct: 18 EDVIDRAIRPKKLADYEGQEHVSDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIV 77 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL Sbjct: 78 ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+I DL+ IVQR Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKIADLQKIVQR 197 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A GL++ E A EIA R+RGTPRIA RLLRRVRD+AEV I +IAD AL L Sbjct: 198 SASCLGLSMEPEGALEIARRARGTPRIANRLLRRVRDYAEVKGNGHICADIADKALNMLD 257 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L I F GGPVG++ ++A + E +D IED+IEPY+IQQG++QRTP Sbjct: 258 VDHQGFDYMDRKLLLAIMEKFAGGPVGLDNLAAAIGEEKDTIEDVIEPYLIQQGYLQRTP 317 Query: 315 RGRLLMPIAWQHLGID 330 RGR+ A+ H GID Sbjct: 318 RGRIASDRAYLHFGID 333 >gi|254228969|ref|ZP_04922390.1| holliday junction DNA helicase RuvB [Vibrio sp. Ex25] gi|151938437|gb|EDN57274.1| holliday junction DNA helicase RuvB [Vibrio sp. Ex25] Length = 361 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/316 (59%), Positives = 241/316 (76%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ +++FI+AA+ R+EALDH+L GPPGLGKTTLA +V Sbjct: 45 EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIV 104 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL Sbjct: 105 ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 164 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL FY+I+DL+ IVQR Sbjct: 165 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEFYKIKDLQDIVQR 224 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I E+AD AL L Sbjct: 225 SADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAEVADKALNMLD 284 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP Sbjct: 285 VDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 344 Query: 315 RGRLLMPIAWQHLGID 330 RGR+ A+ H GI+ Sbjct: 345 RGRIATDRAYLHFGIE 360 >gi|311694931|gb|ADP97804.1| Holliday junction ATP-dependent DNA helicase RuvB [marine bacterium HP15] Length = 347 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 192/334 (57%), Positives = 247/334 (73%), Gaps = 1/334 (0%) Query: 1 MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S R E+ +RP L E+ GQ + +FI AA+ R EALDHVL Sbjct: 5 MIESDRLISARAGEYEEVQDRAIRPTLLAEYVGQPTVREQMDIFISAARGRQEALDHVLI 64 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRLS Sbjct: 65 FGPPGLGKTTLANIIANEMGVSIKTTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLSA 124 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI R Sbjct: 125 AVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 184 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY EDL +I+ R A+L+ +AV + A EIA RSRGTPRIA RLLRRVRDFAEV Sbjct: 185 LEFYNTEDLTSIILRSARLSSVAVDEAGAFEIARRSRGTPRIANRLLRRVRDFAEVRSDG 244 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT +IAD AL L +D GFD +D R L + F GGPVG+E+++A +SE R IED+ Sbjct: 245 RITSDIADQALNMLKVDNQGFDHMDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDV 304 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EP++IQQG++ RTPRGR++ A+QH G+ P Sbjct: 305 LEPFLIQQGYMVRTPRGRMVTSNAYQHFGVIPPK 338 >gi|167837836|ref|ZP_02464719.1| Holliday junction DNA helicase B [Burkholderia thailandensis MSMB43] Length = 356 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 196/320 (61%), Positives = 242/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+A LRPR L+E+ GQ + L++FIEAAK RAEALDHVL GPPGLGKTTLA Sbjct: 20 SHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRAEALDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ E L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRD+AEV IT +ADAAL Sbjct: 200 RRSAALLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLAAP 339 >gi|315498697|ref|YP_004087501.1| holliday junction DNA helicase ruvb [Asticcacaulis excentricus CB 48] gi|315416709|gb|ADU13350.1| Holliday junction DNA helicase RuvB [Asticcacaulis excentricus CB 48] Length = 347 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/311 (61%), Positives = 247/311 (79%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++ ++F GQ +NLK+F++AA AR EALDHVLF GPPGLGKTTLAQ+V++EL V Sbjct: 23 LRPQSFDDFVGQAPLKANLKIFVQAAAARKEALDHVLFYGPPGLGKTTLAQIVSKELKVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR+TSGP++AKAGDLAA+L+NLE DVLFIDEIHRLS VEEILYPAMED+ LDL++G+G Sbjct: 83 FRATSGPMLAKAGDLAAILSNLEPNDVLFIDEIHRLSPQVEEILYPAMEDYVLDLIIGDG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V+I+L FTL+ ATTR GLL+ PL+DRFGIP+RL FY E+L +V + G Sbjct: 143 PAARTVRIDLVPFTLVGATTRAGLLSQPLRDRFGIPLRLEFYTPEELVRVVMGTGRKMGA 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++++ A E+A RSRGTPR+AGRLLRRVRDFA A+ I +++A AL RL +D G D Sbjct: 203 VLSEDGAFEVASRSRGTPRVAGRLLRRVRDFATAEGAEIIDKKVASRALARLEVDPSGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 QLD RYL + N+ GGPVG+ETI+A ++E RDA+ED+IEPY++QQGFIQRTPRGR+ Sbjct: 263 QLDRRYLAAMIENYNGGPVGLETIAAAIAEARDAVEDMIEPYLMQQGFIQRTPRGRMACA 322 Query: 322 IAWQHLGIDIP 332 A+ HLG++ P Sbjct: 323 RAYTHLGLNPP 333 >gi|205352400|ref|YP_002226201.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856585|ref|YP_002243236.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272181|emb|CAR37039.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708388|emb|CAR32692.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247065|emb|CBG24884.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301158415|emb|CBW17922.1| Holliday junction DNA helicase ruvB [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 309 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/306 (61%), Positives = 236/306 (77%) Query: 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 + E+ GQ + S +++FI+AAK R +ALDH+L GPPGLGKTTLA +VA E+GVN R+TS Sbjct: 1 MAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTS 60 Query: 87 GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 GPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEGP+ARS Sbjct: 61 GPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARS 120 Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 +KI+L FTLI ATTR G LT+PL+DRFGI RL FY++ DL+ IV R A+ GL ++D+ Sbjct: 121 IKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHMGLEMSDD 180 Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266 A E+A R+RGTPRIA RLLRRVRDFAEV H I+ EIA AL L +D GFD +D + Sbjct: 181 GALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDYMDRK 240 Query: 267 YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQH 326 L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+ AW H Sbjct: 241 LLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVRAWNH 300 Query: 327 LGIDIP 332 GI P Sbjct: 301 FGITPP 306 >gi|237800219|ref|ZP_04588680.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023076|gb|EGI03133.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 353 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 240/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R+EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY I DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR+ AD AL L +D+ GFD Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPSR 336 >gi|262394693|ref|YP_003286547.1| holliday junction DNA helicase RuvB [Vibrio sp. Ex25] gi|262338287|gb|ACY52082.1| holliday junction DNA helicase RuvB [Vibrio sp. Ex25] Length = 355 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/316 (59%), Positives = 241/316 (76%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ +++FI+AA+ R+EALDH+L GPPGLGKTTLA +V Sbjct: 39 EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIV 98 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL Sbjct: 99 ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 158 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL FY+I+DL+ IVQR Sbjct: 159 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEFYKIKDLQDIVQR 218 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I E+AD AL L Sbjct: 219 SADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAEVADKALNMLD 278 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP Sbjct: 279 VDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 338 Query: 315 RGRLLMPIAWQHLGID 330 RGR+ A+ H GI+ Sbjct: 339 RGRIATDRAYLHFGIE 354 >gi|294626861|ref|ZP_06705453.1| Holliday junction DNA helicase RuvB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665406|ref|ZP_06730694.1| Holliday junction DNA helicase RuvB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598875|gb|EFF43020.1| Holliday junction DNA helicase RuvB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604817|gb|EFF48180.1| Holliday junction DNA helicase RuvB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 346 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 193/332 (58%), Positives = 248/332 (74%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ + S + ++DA + +RP+ L ++ GQ ++++I+AAKAR EA+DHVL Sbjct: 1 MTEQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIF 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS + Sbjct: 61 GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY ++L IV R A + G+ T E A EIA R+RGTPRIA RLLRRVRD+A+V A Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGH 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +A AA+ L +D GFD+LD R L I +F GGPVG+E+++A LSE R +ED+I Sbjct: 241 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQQGF+ RT RGR++ P A+ HLG+ P Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPP 332 >gi|330975327|gb|EGH75393.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 353 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 240/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R+EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY I DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR+ AD AL L +D+ GFD Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPSR 336 >gi|53720507|ref|YP_109493.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei K96243] gi|53726200|ref|YP_103911.1| Holliday junction DNA helicase RuvB [Burkholderia mallei ATCC 23344] gi|67642315|ref|ZP_00441073.1| Holliday junction DNA helicase RuvB [Burkholderia mallei GB8 horse 4] gi|76808940|ref|YP_334778.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 1710b] gi|121600897|ref|YP_991617.1| Holliday junction DNA helicase RuvB [Burkholderia mallei SAVP1] gi|124385061|ref|YP_001027113.1| Holliday junction DNA helicase RuvB [Burkholderia mallei NCTC 10229] gi|126441519|ref|YP_001060377.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 668] gi|126448021|ref|YP_001082058.1| Holliday junction DNA helicase RuvB [Burkholderia mallei NCTC 10247] gi|126454669|ref|YP_001067638.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 1106a] gi|134280568|ref|ZP_01767279.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 305] gi|167000503|ref|ZP_02266315.1| Holliday junction DNA helicase RuvB [Burkholderia mallei PRL-20] gi|167740151|ref|ZP_02412925.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 14] gi|167817364|ref|ZP_02449044.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 91] gi|167825772|ref|ZP_02457243.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 9] gi|167847254|ref|ZP_02472762.1| Holliday junction DNA helicase B [Burkholderia pseudomallei B7210] gi|167895841|ref|ZP_02483243.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 7894] gi|167904232|ref|ZP_02491437.1| Holliday junction DNA helicase B [Burkholderia pseudomallei NCTC 13177] gi|167920443|ref|ZP_02507534.1| Holliday junction DNA helicase B [Burkholderia pseudomallei BCC215] gi|217421021|ref|ZP_03452526.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 576] gi|226198383|ref|ZP_03793952.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei Pakistan 9] gi|237813765|ref|YP_002898216.1| holliday junction DNA helicase RuvB [Burkholderia pseudomallei MSHR346] gi|242315146|ref|ZP_04814162.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 1106b] gi|254178911|ref|ZP_04885565.1| Holliday junction DNA helicase RuvB [Burkholderia mallei ATCC 10399] gi|254180687|ref|ZP_04887285.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 1655] gi|254191516|ref|ZP_04898019.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei Pasteur 52237] gi|254194850|ref|ZP_04901280.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei S13] gi|254202623|ref|ZP_04908986.1| Holliday junction DNA helicase RuvB [Burkholderia mallei FMH] gi|254207962|ref|ZP_04914312.1| Holliday junction DNA helicase RuvB [Burkholderia mallei JHU] gi|254260762|ref|ZP_04951816.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 1710a] gi|254299227|ref|ZP_04966677.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 406e] gi|254355898|ref|ZP_04972176.1| Holliday junction DNA helicase RuvB [Burkholderia mallei 2002721280] gi|68715374|sp|Q62HA9|RUVB_BURMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|68715383|sp|Q63QX5|RUVB_BURPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|97189943|sp|Q3JNS5|RUVB_BURP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231468|sp|A3MP72|RUVB_BURM7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231469|sp|A2S594|RUVB_BURM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231470|sp|A1V064|RUVB_BURMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231471|sp|A3NZ67|RUVB_BURP0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231472|sp|A3NDF6|RUVB_BURP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|52210921|emb|CAH36909.1| holliday junction DNA helicase [Burkholderia pseudomallei K96243] gi|52429623|gb|AAU50216.1| Holliday junction DNA helicase RuvB [Burkholderia mallei ATCC 23344] gi|76578393|gb|ABA47868.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 1710b] gi|121229707|gb|ABM52225.1| Holliday junction DNA helicase RuvB [Burkholderia mallei SAVP1] gi|124293081|gb|ABN02350.1| Holliday junction DNA helicase RuvB [Burkholderia mallei NCTC 10229] gi|126221012|gb|ABN84518.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 668] gi|126228311|gb|ABN91851.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 1106a] gi|126240891|gb|ABO03984.1| Holliday junction DNA helicase RuvB [Burkholderia mallei NCTC 10247] gi|134248575|gb|EBA48658.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 305] gi|147746870|gb|EDK53947.1| Holliday junction DNA helicase RuvB [Burkholderia mallei FMH] gi|147751856|gb|EDK58923.1| Holliday junction DNA helicase RuvB [Burkholderia mallei JHU] gi|148024873|gb|EDK83051.1| Holliday junction DNA helicase RuvB [Burkholderia mallei 2002721280] gi|157808819|gb|EDO85989.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 406e] gi|157939187|gb|EDO94857.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei Pasteur 52237] gi|160694825|gb|EDP84833.1| Holliday junction DNA helicase RuvB [Burkholderia mallei ATCC 10399] gi|169651599|gb|EDS84292.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei S13] gi|184211226|gb|EDU08269.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 1655] gi|217396433|gb|EEC36450.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 576] gi|225929566|gb|EEH25584.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei Pakistan 9] gi|237504665|gb|ACQ96983.1| holliday junction DNA helicase RuvB [Burkholderia pseudomallei MSHR346] gi|238523443|gb|EEP86881.1| Holliday junction DNA helicase RuvB [Burkholderia mallei GB8 horse 4] gi|242138385|gb|EES24787.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 1106b] gi|243063558|gb|EES45744.1| Holliday junction DNA helicase RuvB [Burkholderia mallei PRL-20] gi|254219451|gb|EET08835.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 1710a] Length = 356 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/320 (60%), Positives = 242/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+A LRPR L+E+ GQ + L++FIEAAK R+EALDHVL GPPGLGKTTLA Sbjct: 20 SHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ E L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRD+AEV IT +ADAAL Sbjct: 200 RRSAALLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339 >gi|71275801|ref|ZP_00652085.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa Dixon] gi|71900400|ref|ZP_00682533.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa Ann-1] gi|170730219|ref|YP_001775652.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa M12] gi|238687918|sp|B0U2E3|RUVB_XYLFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|71163379|gb|EAO13097.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa Dixon] gi|71729832|gb|EAO31930.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa Ann-1] gi|167965012|gb|ACA12022.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa M12] Length = 343 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/329 (60%), Positives = 244/329 (74%), Gaps = 3/329 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MDR ++ ++ED I + +RP+ L ++ GQ + ++I+A KARAEALDHVL Sbjct: 1 MDR--IIDTAATREDEAIEVSIRPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ V+A ELGV R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLSHVIAYELGVKLRVTSGPVIEKAGDLAALLTNLQPYDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQ+D+M+GEGP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL Sbjct: 119 VEEVLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRTGLLTAPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY EDL IV+R A + + T E A EIA R+RGTPRIA RLLRRVRD+AEV Sbjct: 179 EFYSPEDLARIVRRSAGILNIDCTTEGAAEIAQRARGTPRIANRLLRRVRDYAEVKAGGQ 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT E+A AA+ L +D+ GFD+LD R L I F GGPVGIE+++A LSE R +ED++ Sbjct: 239 ITIEVAQAAMQMLKVDQGGFDELDRRLLHTIVEYFDGGPVGIESLAASLSEERGTLEDVV 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY+IQQGF+ RT RGR+ A+QHL + Sbjct: 299 EPYLIQQGFLVRTARGRMATDKAYQHLAL 327 >gi|255065913|ref|ZP_05317768.1| holliday junction DNA helicase RuvB [Neisseria sicca ATCC 29256] gi|255049824|gb|EET45288.1| holliday junction DNA helicase RuvB [Neisseria sicca ATCC 29256] Length = 343 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/319 (61%), Positives = 242/319 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+ LRP+TL+++ GQ +A L +FI+AAK R EALDH L GPPGLGKTTLA Sbjct: 23 SQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY+ +DL TIV Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYQNQDLATIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L + +E A E+A RSRGTPRIA RLLRRVRDFA+V + I IADAAL Sbjct: 203 SRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAIADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L I F GGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAQGLDVMDRKFLEAILHKFSGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ + H G+ + Sbjct: 323 TPRGRMATERTYLHFGLKM 341 >gi|21243873|ref|NP_643455.1| Holliday junction DNA helicase RuvB [Xanthomonas axonopodis pv. citri str. 306] gi|24212376|sp|Q8PHV2|RUVB_XANAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|21109474|gb|AAM37991.1| holliday junction binding protein DNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 346 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 193/332 (58%), Positives = 248/332 (74%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ + S + ++DA + +RP+ L ++ GQ ++++I+AAKAR EA+DHVL Sbjct: 1 MTEQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIF 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS + Sbjct: 61 GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY ++L IV R A + G+ T E A EIA R+RGTPRIA RLLRRVRD+A+V A Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTAEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGH 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +A AA+ L +D GFD+LD R L I +F GGPVG+E+++A LSE R +ED+I Sbjct: 241 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQQGF+ RT RGR++ P A+ HLG+ P Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPP 332 >gi|167721175|ref|ZP_02404411.1| Holliday junction DNA helicase B [Burkholderia pseudomallei DM98] Length = 356 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/320 (60%), Positives = 242/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+A LRPR L+E+ GQ + L++FIEAAK R+EALDHVL GPPGLGKTTLA Sbjct: 20 SHEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ E L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRD+AEV IT +ADAAL Sbjct: 200 RRSAALLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339 >gi|66044658|ref|YP_234499.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. syringae B728a] gi|81308433|sp|Q4ZWL1|RUVB_PSEU2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|63255365|gb|AAY36461.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. syringae B728a] gi|330968890|gb|EGH68956.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 353 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 240/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R+EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY I DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR+ AD AL L +D+ GFD Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPSR 336 >gi|149910564|ref|ZP_01899203.1| Holliday junction DNA helicase RuvB [Moritella sp. PE36] gi|149806407|gb|EDM66380.1| Holliday junction DNA helicase RuvB [Moritella sp. PE36] Length = 335 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 193/335 (57%), Positives = 248/335 (74%), Gaps = 1/335 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S +E+ I +RP+ L ++ GQ S +++FIEA+K R +ALDH+L Sbjct: 1 MIEADRLISSGTVREEEVIDRAIRPKMLSDYQGQDHVRSQMEIFIEASKRRDDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GV+ ++TSGPV+ KAGDLAALLTNLE DVLFIDEIHRL+ Sbjct: 61 FGPPGLGKTTLANIVANEMGVSIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLNP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EEILYPAMED+QLD+M+GEGPSARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 SIEEILYPAMEDYQLDIMIGEGPSARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++EDL+ IV R A GL + A EIA R+RGTPRIA RLLRRVRD+AEV H Sbjct: 181 LEFYKVEDLQDIVLRSATCLGLNMDRAGALEIARRARGTPRIANRLLRRVRDYAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I EI+ AAL L +D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 DIDAEISSAALSMLDVDTCGFDYMDRKLLIAIIDTFSGGPVGLDNVAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 +EPY+IQQGF+QRTPRGR+ A+ HLG D P + Sbjct: 301 LEPYLIQQGFLQRTPRGRIATARAYLHLGFDYPEK 335 >gi|183599001|ref|ZP_02960494.1| hypothetical protein PROSTU_02445 [Providencia stuartii ATCC 25827] gi|188021216|gb|EDU59256.1| hypothetical protein PROSTU_02445 [Providencia stuartii ATCC 25827] Length = 336 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/331 (57%), Positives = 249/331 (75%), Gaps = 2/331 (0%) Query: 1 MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M++ + L+S V +E+A +RP+ L E+ GQ + +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAEVIHDEEEAIDRAIRPKLLNEYIGQPQVKEQMEIFIQAAKLRGDALDHLL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 IFGPPGLGKTTLAGIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL FY ++DL+ IV+R A+ G+ +++E A ++AMRSRGTPRI RLLRRVRDFA+V Sbjct: 181 RLEFYNVDDLQYIVKRSAQFMGVEISEEGARQVAMRSRGTPRITNRLLRRVRDFAQVKGD 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 +I IA AL L +D GFD LD + L I F GGPVG++ ++A + E R+ IED Sbjct: 241 GSINELIASQALDMLNVDAAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIED 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 ++EP++IQQGFIQRTPRGR+ A+ H G+ Sbjct: 301 VLEPFLIQQGFIQRTPRGRMATAHAYLHFGL 331 >gi|148284808|ref|YP_001248898.1| Holliday junction DNA helicase B [Orientia tsutsugamushi str. Boryong] gi|172047216|sp|A5CEJ6|RUVB_ORITB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|146740247|emb|CAM80578.1| Holliday junction DNA helicase [Orientia tsutsugamushi str. Boryong] Length = 325 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/324 (58%), Positives = 245/324 (75%), Gaps = 1/324 (0%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 + LL V+ E+ + ++LRP L +F GQ + SNL +FI ++ R E+LDH L GPP Sbjct: 2 KNQLLDAKVASEEQE-TVLRPSLLNDFIGQNQMKSNLTIFITSSIERDESLDHTLLHGPP 60 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKT++AQ++A+E VN +ST+GP+++KA DLAA+LTNL+ DVLFIDEIHRL+I VEE Sbjct: 61 GLGKTSIAQIIAKEKNVNLKSTAGPILSKAADLAAILTNLQKNDVLFIDEIHRLNIHVEE 120 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 ILY AMEDF LD+M+GEGPSARSVKI L +FTLI ATTR+GL++ PL DRFGI ++LNFY Sbjct: 121 ILYSAMEDFSLDIMIGEGPSARSVKIYLPKFTLIGATTRLGLISKPLCDRFGIHLKLNFY 180 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E+L IV+RGAK+ +A+ AA EIA RSRGTPRIA RLL+RVRDF + + + Sbjct: 181 SCEELTQIVERGAKVLNVALDTNAAIEIANRSRGTPRIALRLLKRVRDFGIYQNINPLNQ 240 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +I D AL +L IDK+G D D +YL IA N+ GGPVGI+TI+A LSE RD IE++IEPY Sbjct: 241 QITDYALNQLGIDKLGLDSSDHKYLRFIAENYDGGPVGIDTIAAALSEQRDTIEEMIEPY 300 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327 +IQ GF+QRT RGR++ A +HL Sbjct: 301 LIQIGFVQRTQRGRVITANALKHL 324 >gi|146306304|ref|YP_001186769.1| Holliday junction DNA helicase B [Pseudomonas mendocina ymp] gi|166231540|sp|A4XRS1|RUVB_PSEMY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|145574505|gb|ABP84037.1| Holliday junction DNA helicase RuvB [Pseudomonas mendocina ymp] Length = 350 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/313 (60%), Positives = 241/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ +++FI+AA+ RAE+LDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 23 IRPLKLADYIGQPGVREQMELFIQAARGRAESLDHTLIFGPPGLGKTTLANIIAQEMGVS 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAALLTNLE DVLF+DEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 83 IKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY I+DL TIV R A + GL Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYGIDDLATIVTRSAGILGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+ A EIA R+RGTPRIA RLLRRVRDFAEV ITREIAD AL L +D+ GFD Sbjct: 203 PIEDQGAYEIARRARGTPRIANRLLRRVRDFAEVRGRGHITREIADQALNLLDVDERGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG++ RTPRGR++ Sbjct: 263 HSDRRLLLAMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYMMRTPRGRVVTR 322 Query: 322 IAWQHLGIDIPHR 334 A+ H G++ P R Sbjct: 323 HAYLHFGLNTPKR 335 >gi|317491788|ref|ZP_07950223.1| Holliday junction DNA helicase RuvB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920222|gb|EFV41546.1| Holliday junction DNA helicase RuvB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 335 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/330 (57%), Positives = 250/330 (75%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L++ V E+ I +RP++L E+ GQ + +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLITAEVQSEEEIIDRAIRPKSLSEYVGQPQVRGQMEIFIKAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL++T+E A E+A RSRGTPRIA RLLRRVRD+AEV Sbjct: 181 LEFYQVADLQHIVGRSAQCLGLSLTEEGAHEVARRSRGTPRIANRLLRRVRDYAEVCADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I ++A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 NIDADVATQALNMLDVDAEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGF+QRTPRGR+ A++H G+ Sbjct: 301 LEPYLIQQGFLQRTPRGRMATNHAYKHFGM 330 >gi|71278079|ref|YP_268843.1| Holliday junction DNA helicase RuvB [Colwellia psychrerythraea 34H] gi|97190000|sp|Q483C4|RUVB_COLP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|71143819|gb|AAZ24292.1| Holliday junction DNA helicase RuvB [Colwellia psychrerythraea 34H] Length = 337 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/330 (57%), Positives = 245/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+ S ED + +RP+ L+++TGQ + +++FI AAK R E LDH+L Sbjct: 1 MIEADRLIEPIASVEDERVDRAIRPKMLQDYTGQQHVKAQMEIFIPAAKNRGEPLDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ D+LFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDILFIDEIHRLSA 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY + DL TIV R A L + +E A E+A RSRGTPRIA RLLRRVRD+A++ Sbjct: 181 LEFYNVADLSTIVSRSAHFLNLTIDEEGAFEVARRSRGTPRIANRLLRRVRDYADIKSHG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 + ++ A AAL L +D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 VVNQQTAAAALDMLEVDSEGFDIMDRKLLHAIIDKFMGGPVGLDNVAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 IEP++IQQGF+QRTPRGR+ A+QH GI Sbjct: 301 IEPFLIQQGFLQRTPRGRIATDRAYQHFGI 330 >gi|331007237|ref|ZP_08330444.1| Holliday junction DNA helicase RuvB [gamma proteobacterium IMCC1989] gi|330418953|gb|EGG93412.1| Holliday junction DNA helicase RuvB [gamma proteobacterium IMCC1989] Length = 344 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/308 (59%), Positives = 239/308 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL ++ GQ + +++FI+AAK R E LDH L GPPGLGKTTLA ++A E+GV Sbjct: 28 IRPKTLVDYVGQPQVREQMEIFIQAAKKREEPLDHTLVFGPPGLGKTTLANIIANEMGVQ 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +TSGPVI KAGDLAAL+TNL+ DVLFIDEIHRLS +EE+LYPAMED+QLD+M+GEG Sbjct: 88 VTATSGPVIEKAGDLAALMTNLQAGDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 147 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY I DL IV R A+L G+ Sbjct: 148 PAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYSIPDLTYIVGRSARLLGV 207 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRI+ RLLRRVRD+AEV +IT++IADAAL L++D+ GFD Sbjct: 208 EMDEAGAGEIAKRSRGTPRISNRLLRRVRDYAEVKSDGSITQDIADAALNMLSVDQHGFD 267 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L + F GGPVG+E+++A +SE RD IED++EPY+IQQG++ RTPRGR++ Sbjct: 268 TMDRRLLLAMIEKFDGGPVGVESLAAAISEERDTIEDVLEPYLIQQGYMARTPRGRIVTQ 327 Query: 322 IAWQHLGI 329 +A+ H I Sbjct: 328 LAYDHFSI 335 >gi|320155873|ref|YP_004188252.1| Holliday junction DNA helicase RuvB [Vibrio vulnificus MO6-24/O] gi|326423954|ref|NP_761018.2| Holliday junction DNA helicase RuvB [Vibrio vulnificus CMCP6] gi|319931185|gb|ADV86049.1| holliday junction DNA helicase RuvB [Vibrio vulnificus MO6-24/O] gi|319999332|gb|AAO10545.2| Holliday junction DNA helicase RuvB [Vibrio vulnificus CMCP6] Length = 334 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/316 (59%), Positives = 239/316 (75%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA +V Sbjct: 18 EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIV 77 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL Sbjct: 78 ANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+I DL+ IVQR Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIVQR 197 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A GL++ E A E+A R+RGTPRIA RLLRRVRDFAEV I + AD AL L Sbjct: 198 SADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDFAEVKGNGHICADTADKALNMLD 257 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP Sbjct: 258 VDSKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 317 Query: 315 RGRLLMPIAWQHLGID 330 RGR+ A+ H GI+ Sbjct: 318 RGRIATDRAYLHFGIE 333 >gi|77919932|ref|YP_357747.1| Holliday junction DNA helicase RuvB [Pelobacter carbinolicus DSM 2380] gi|97190190|sp|Q3A230|RUVB_PELCD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|77546015|gb|ABA89577.1| Holliday junction DNA helicase RuvB [Pelobacter carbinolicus DSM 2380] Length = 341 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/320 (59%), Positives = 241/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S+ED + LRPR L E+ GQ +A NL+VFI+AA+ R E+LDHVLF GPPGLGKTTLA Sbjct: 12 SEEDRLEASLRPRVLTEYIGQSKAKGNLQVFIDAARGRQESLDHVLFYGPPGLGKTTLAN 71 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VA E+GV+ +STSGPVI K GDLAA+LTNL D DVLFIDEIHRLS +VEEILYPAMED+ Sbjct: 72 IVASEMGVSIKSTSGPVIEKPGDLAAILTNLSDGDVLFIDEIHRLSPVVEEILYPAMEDY 131 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+++G+GPSAR++K+++ RFTL+ ATTR GLL++PL+DRFG+ RL FY ++L TI Sbjct: 132 QLDIIIGQGPSARTIKLDIPRFTLVGATTRAGLLSSPLRDRFGVICRLEFYTDDELATIA 191 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A++ + + + EIA RSRGTPRIA RLLRRVRDFA+V ITR+IAD AL R Sbjct: 192 GRSARILDIPIEKDGQYEIARRSRGTPRIANRLLRRVRDFAQVKGDGIITRDIADMALSR 251 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D L I F GGPVG+ET++A + E +D IED+IEPY++Q GF+ R Sbjct: 252 LEVDNCGLDHMDRLLLLAIIDKFAGGPVGLETLAAAVGEEKDTIEDVIEPYLLQNGFLNR 311 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR A++H IP Sbjct: 312 TPRGRTATERAYRHFQRQIP 331 >gi|37680468|ref|NP_935077.1| Holliday junction DNA helicase B [Vibrio vulnificus YJ016] gi|44888370|sp|Q7MJ78|RUVB_VIBVY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|37199216|dbj|BAC95048.1| holliday junction resolvasome, helicase subunit [Vibrio vulnificus YJ016] Length = 334 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/316 (59%), Positives = 239/316 (75%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA +V Sbjct: 18 EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIV 77 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL Sbjct: 78 ANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+I DL+ IVQR Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIVQR 197 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A GL++ E A E+A R+RGTPRIA RLLRRVRDFAEV I + AD AL L Sbjct: 198 SADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDFAEVKGNGHICADTADKALNMLD 257 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP Sbjct: 258 VDSKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 317 Query: 315 RGRLLMPIAWQHLGID 330 RGR+ A+ H GI+ Sbjct: 318 RGRIATDRAYLHFGIE 333 >gi|39996179|ref|NP_952130.1| Holliday junction DNA helicase RuvB [Geobacter sulfurreducens PCA] gi|47606085|sp|P61532|RUVB_GEOSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|39982944|gb|AAR34403.1| Holliday junction DNA helicase RuvB [Geobacter sulfurreducens PCA] gi|298505193|gb|ADI83916.1| Holliday junction DNA helicase RuvB [Geobacter sulfurreducens KN400] Length = 338 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/326 (58%), Positives = 244/326 (74%), Gaps = 4/326 (1%) Query: 7 LLSRNVSQEDADI----SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 + +R +S E D S LRPR LE++ GQ +A NL+VFI+AA+ R EALDHVL GP Sbjct: 1 MTTRTISPEKTDDDYVESSLRPRALEDYIGQEKAKGNLRVFIDAARKRGEALDHVLLYGP 60 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE DVLFIDEIHRLS +VE Sbjct: 61 PGLGKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVE 120 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 EILYPAMEDFQLD+++G+GPSAR++K++L RFTL+ ATTR GLL++PL+DRFG+ RL F Sbjct: 121 EILYPAMEDFQLDIIIGQGPSARTIKLDLPRFTLVGATTRAGLLSSPLRDRFGVISRLEF 180 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y +L TIV R A + + + + A E+A RSRGTPRIA RLLRRVRDFA+V I+ Sbjct: 181 YTDAELSTIVTRSAHILDIQIEPDGARELARRSRGTPRIANRLLRRVRDFAQVRADGVIS 240 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 ++ D +L L ID+ GFDQ+D + I FGGGPVG++TI+A + E RD IED+ EP Sbjct: 241 AQVVDESLKLLEIDEKGFDQMDRTIMLTIIDKFGGGPVGLDTIAAAIGEERDTIEDVYEP 300 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328 ++IQ GFI RTPRGR+ A++H G Sbjct: 301 FLIQHGFINRTPRGRVATKSAYEHFG 326 >gi|315126272|ref|YP_004068275.1| Holliday junction DNA helicase B [Pseudoalteromonas sp. SM9913] gi|315014786|gb|ADT68124.1| Holliday junction DNA helicase B [Pseudoalteromonas sp. SM9913] Length = 335 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/317 (58%), Positives = 238/317 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + ED +RP+ L ++ GQ +++FIEAA++R+EALDH+L GPPGLGKTTLA Sbjct: 14 TNEDTIDRAIRPKLLADYRGQPHVKQQMEIFIEAARSRSEALDHLLIFGPPGLGKTTLAN 73 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VA EL VN ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS VEEILYPAMED+ Sbjct: 74 IVANELNVNIKTTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSPQVEEILYPAMEDY 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY +EDL IV Sbjct: 134 QLDIMIGEGPAARSIKLDLPAFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLSHIV 193 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L + D+ A EIA RSRGTPRIA RLLRRVRD+ +V T+ E+A AL Sbjct: 194 GRSAHYLSLEMCDDGAAEIAKRSRGTPRIANRLLRRVRDYTQVKSDGTVNAEVAQQALDM 253 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 + +DK GFD +D +YL I F GGPVG++ ++A + E ++ IED+IEP++IQQGFIQR Sbjct: 254 IDVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNLAAAIGEEKETIEDVIEPFLIQQGFIQR 313 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR++ A+ H G+ Sbjct: 314 TPRGRIVSDNAYHHFGL 330 >gi|240014101|ref|ZP_04721014.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae DGI18] gi|240016536|ref|ZP_04723076.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae FA6140] gi|240080660|ref|ZP_04725203.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae FA19] gi|240115729|ref|ZP_04729791.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae PID18] gi|240118025|ref|ZP_04732087.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae PID1] gi|240121663|ref|ZP_04734625.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae PID24-1] gi|240123579|ref|ZP_04736535.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae PID332] gi|254493780|ref|ZP_05106951.1| holliday junction DNA helicase B [Neisseria gonorrhoeae 1291] gi|268596783|ref|ZP_06130950.1| holliday junction DNA helicase B [Neisseria gonorrhoeae FA19] gi|268601408|ref|ZP_06135575.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID18] gi|268603739|ref|ZP_06137906.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID1] gi|268682208|ref|ZP_06149070.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID332] gi|226512820|gb|EEH62165.1| holliday junction DNA helicase B [Neisseria gonorrhoeae 1291] gi|268550571|gb|EEZ45590.1| holliday junction DNA helicase B [Neisseria gonorrhoeae FA19] gi|268585539|gb|EEZ50215.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID18] gi|268587870|gb|EEZ52546.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID1] gi|268622492|gb|EEZ54892.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID332] Length = 343 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/319 (60%), Positives = 244/319 (76%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+ LRP+TL+++ GQ +A L +FI+AAK R EALDHVL GPPGLGKTTLA Sbjct: 23 AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNL+ DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FYE DL TIV Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L + +E A E+A RSRGTPRIA RLLRRVRDFA+V + I +ADAAL Sbjct: 203 SRSAQLLQLDMDEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L + FGGGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ A+ H G+ + Sbjct: 323 TPRGRMATERAYLHFGLPV 341 >gi|241766522|ref|ZP_04764386.1| Holliday junction DNA helicase RuvB [Acidovorax delafieldii 2AN] gi|241363255|gb|EER58814.1| Holliday junction DNA helicase RuvB [Acidovorax delafieldii 2AN] Length = 352 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/320 (59%), Positives = 239/320 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QE+A LRP+ L+E+ GQ +A L++FI AA+ R EALDHVL GPPGLGKTTL+ + Sbjct: 25 QEEAIERALRPKLLQEYVGQAKAREQLEIFIGAARKRGEALDHVLLFGPPGLGKTTLSHI 84 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 85 IAAELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQ 144 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 145 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELARIVT 204 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L G + DE E+A RSRGTPRIA RLLRRVRD+AEV + ITR+IA+ AL L Sbjct: 205 RSAGLLGTPMDDEGGFELARRSRGTPRIANRLLRRVRDYAEVKGSGRITRDIANRALAML 264 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L + F GGPVG++ I+A + E IED+IEPY+IQQG++QRT Sbjct: 265 DVDPQGFDVMDRKLLEALIHRFDGGPVGLDNIAASIGEEAGTIEDVIEPYLIQQGYLQRT 324 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 PRGR+ A++HLG+ P Sbjct: 325 PRGRIATLAAYRHLGVTPPQ 344 >gi|28198791|ref|NP_779105.1| Holliday junction DNA helicase B [Xylella fastidiosa Temecula1] gi|182681490|ref|YP_001829650.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa M23] gi|32130011|sp|Q87D00|RUVB_XYLFT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238691038|sp|B2I4T1|RUVB_XYLF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|28056882|gb|AAO28754.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa Temecula1] gi|182631600|gb|ACB92376.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa M23] gi|307579944|gb|ADN63913.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa subsp. fastidiosa GB514] Length = 343 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/329 (60%), Positives = 244/329 (74%), Gaps = 3/329 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MDR ++ ++ED I + +RP+ L ++ GQ + ++I+A KARAEALDHVL Sbjct: 1 MDR--IIDSAATREDEAIEVSIRPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ V+A ELGV R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLSHVIAYELGVKLRVTSGPVIEKAGDLAALLTNLQPYDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQ+D+M+GEGP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL Sbjct: 119 VEEVLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRTGLLTAPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY EDL IV+R A + + T E A EIA R+RGTPRIA RLLRRVRD+AEV Sbjct: 179 EFYSPEDLARIVRRSAGILNIDCTTEGAAEIAQRARGTPRIANRLLRRVRDYAEVKADGQ 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT E+A AA+ L +D+ GFD+LD R L I F GGPVGIE+++A LSE R +ED++ Sbjct: 239 ITIEVAQAAMQMLKVDQGGFDELDRRLLHTIVEYFDGGPVGIESLAASLSEERGTLEDVV 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY+IQQGF+ RT RGR+ A+QHL + Sbjct: 299 EPYLIQQGFLVRTARGRMATDKAYQHLAL 327 >gi|15838500|ref|NP_299188.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa 9a5c] gi|20140310|sp|Q9PC79|RUVB_XYLFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|9106997|gb|AAF84708.1|AE004010_5 holliday junction binding protein, DNA helicase [Xylella fastidiosa 9a5c] Length = 343 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/329 (60%), Positives = 243/329 (73%), Gaps = 3/329 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MDR ++ + ED I + +RP+ L ++ GQ + ++I+A KARAEALDHVL Sbjct: 1 MDR--IIDTAATSEDEAIEVSIRPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ V+A ELGV R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLSHVIAYELGVKLRVTSGPVIEKAGDLAALLTNLQPYDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQ+D+M+GEGP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL Sbjct: 119 VEEVLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRTGLLTAPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY EDL IV+R A + + T E A EIA R+RGTPRIA RLLRRVRD+AEV Sbjct: 179 EFYSPEDLARIVRRSAGILNIDCTTEGAAEIAQRARGTPRIANRLLRRVRDYAEVKAGGQ 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT E+A AA+ L +D+ GFD+LD R L I F GGPVGIE+++A LSE R +ED++ Sbjct: 239 ITIEVAQAAMQMLKVDQGGFDELDRRLLHTIVEYFDGGPVGIESLAASLSEERGTLEDVV 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY+IQQGF+ RT RGR+ A+QHL + Sbjct: 299 EPYLIQQGFLVRTARGRMATDKAYQHLAL 327 >gi|330959266|gb|EGH59526.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 353 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 240/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R+EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY I DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR+ AD AL L +D+ GFD Sbjct: 204 VIEPKGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPAR 336 >gi|330828298|ref|YP_004391250.1| Holliday junction ATP-dependent DNA helicase ruvB [Aeromonas veronii B565] gi|328803434|gb|AEB48633.1| Holliday junction ATP-dependent DNA helicase ruvB [Aeromonas veronii B565] Length = 336 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/333 (57%), Positives = 249/333 (74%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ++ED I +RP+ L ++TGQ C +++FIEAA+ R EALDH+L Sbjct: 1 MIEADRLISASAAREDDIIDRAIRPKKLADYTGQDTVCEQMEIFIEAARQRGEALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL IV R A+ GL +T++ A E+A RSRGTPRIA RLLRRVRDFA+V Sbjct: 181 LEFYNVKDLTDIVSRSARCLGLDMTEDGAIEVARRSRGTPRIANRLLRRVRDFAQVKSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I IA A+ L +D GFD +D + L + F GGPVG++ ++A + E +D IED+ Sbjct: 241 RIDGPIAARAMDMLDVDNEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEEKDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQG++QRTPRGR+ A+ H G+ P Sbjct: 301 LEPYLIQQGYLQRTPRGRIATTRAYAHFGLQRP 333 >gi|311104196|ref|YP_003977049.1| holliday junction DNA helicase RuvB [Achromobacter xylosoxidans A8] gi|310758885|gb|ADP14334.1| holliday junction DNA helicase RuvB [Achromobacter xylosoxidans A8] Length = 357 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/311 (60%), Positives = 230/311 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ A L++FI AAK R EALDHVL GPPGLGKTTLA ++A E+GV Sbjct: 34 LRPKALQEYVGQHRAREQLEIFIAAAKKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG Sbjct: 94 LRQTSGPVLERPGDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY DL IV R A L Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNAADLGHIVTRSAGLLNA 213 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+T E A E+A R+RGTPRIA RLLRRVRD+AEV TI E+A AL L +D G D Sbjct: 214 AITPEGAAEVARRARGTPRIANRLLRRVRDYAEVKAGGTIDAEVAGRALAMLEVDPQGLD 273 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR Sbjct: 274 LMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRTATL 333 Query: 322 IAWQHLGIDIP 332 W+HLG+ P Sbjct: 334 TTWRHLGLTPP 344 >gi|289626497|ref|ZP_06459451.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650943|ref|ZP_06482286.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. aesculi str. 2250] gi|298488208|ref|ZP_07006244.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157266|gb|EFH98350.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868613|gb|EGH03322.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330988970|gb|EGH87073.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. lachrymans str. M301315] Length = 353 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 239/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLSLADYIGQPTVREQMELFIQAARGRNEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY I DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR+ AD AL L +D+ GFD Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPSR 336 >gi|319786207|ref|YP_004145682.1| Holliday junction DNA helicase RuvB [Pseudoxanthomonas suwonensis 11-1] gi|317464719|gb|ADV26451.1| Holliday junction DNA helicase RuvB [Pseudoxanthomonas suwonensis 11-1] Length = 341 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/335 (57%), Positives = 249/335 (74%), Gaps = 1/335 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M + +L ++ED + + +RP+ L+E+ GQ L ++IEAA+AR EALDHVL Sbjct: 1 MSEHRSILGAGATREDEALEASIRPQRLDEYLGQQPVREQLGIYIEAARARGEALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ V+A ELGVN R TSGPVI KAGDLAALLTNL+ DVLFIDEIHR+S Sbjct: 61 FGPPGLGKTTLSHVIANELGVNLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRMSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMEDFQ+D+M+GEGP+ARS+K++L FTLI ATTR GLLT PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDFQIDIMIGEGPAARSIKLDLPPFTLIGATTRAGLLTAPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY E+L IV+R A++ G+ + A EIA R+RGTPRIA RLLRRVRD+A+V Sbjct: 181 LEFYTPEELTKIVRRSARILGIDCEADGAGEIARRARGTPRIANRLLRRVRDYAQVRAGG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I ++A AA+ L +D GFD+LD R L I +F GGPVG+E+++A LSE R +ED+ Sbjct: 241 RIDMDVAQAAMAMLKVDPEGFDELDRRLLNTIIGHFDGGPVGVESLAASLSEERGTLEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 IEPY+IQQGF+ RT RGR+ A++HLG+ +P R Sbjct: 301 IEPYLIQQGFLVRTARGRMATSKAYRHLGLAVPTR 335 >gi|331016440|gb|EGH96496.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 353 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/337 (57%), Positives = 251/337 (74%), Gaps = 4/337 (1%) Query: 1 MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M+D + L++ V D D L +RP +L ++ GQ +++FI+AA+ R+EALDH Sbjct: 1 MIDADRLIT-AVGGRDRDEQLDRAIRPLSLADYIGQPTVREQMELFIQAARGRSEALDHT 59 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRL Sbjct: 60 LIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRL 119 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI Sbjct: 120 SPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIV 179 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL FY I DL TIV R A + GL + E A EIA R+RGTPRIA RLLRRVRDFA+V Sbjct: 180 QRLEFYNIADLSTIVARSAGILGLVIEPEGAFEIARRARGTPRIANRLLRRVRDFAQVRG 239 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 ITR+ AD AL L +D+ GFD D R L + F GGPVG+++++A +SE R IE Sbjct: 240 NGQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIE 299 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 D++EPY+IQQG+I RTPRGR++ A+ H G++IP R Sbjct: 300 DVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPTR 336 >gi|59801175|ref|YP_207887.1| Holliday junction DNA helicase B [Neisseria gonorrhoeae FA 1090] gi|194098681|ref|YP_002001743.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae NCCP11945] gi|239998989|ref|ZP_04718913.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae 35/02] gi|240125761|ref|ZP_04738647.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae SK-92-679] gi|240128283|ref|ZP_04740944.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae SK-93-1035] gi|260440459|ref|ZP_05794275.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae DGI2] gi|268594837|ref|ZP_06129004.1| holliday junction DNA helicase B [Neisseria gonorrhoeae 35/02] gi|268684359|ref|ZP_06151221.1| holliday junction DNA helicase B [Neisseria gonorrhoeae SK-92-679] gi|268686680|ref|ZP_06153542.1| holliday junction DNA helicase B [Neisseria gonorrhoeae SK-93-1035] gi|291043758|ref|ZP_06569474.1| holliday junction DNA helicase RuvB [Neisseria gonorrhoeae DGI2] gi|293399043|ref|ZP_06643208.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae F62] gi|81311201|sp|Q5F8L2|RUVB_NEIG1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238690208|sp|B4RLV8|RUVB_NEIG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|59718070|gb|AAW89475.1| putative Holliday junction DNA helicase [Neisseria gonorrhoeae FA 1090] gi|193933971|gb|ACF29795.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae NCCP11945] gi|268548226|gb|EEZ43644.1| holliday junction DNA helicase B [Neisseria gonorrhoeae 35/02] gi|268624643|gb|EEZ57043.1| holliday junction DNA helicase B [Neisseria gonorrhoeae SK-92-679] gi|268626964|gb|EEZ59364.1| holliday junction DNA helicase B [Neisseria gonorrhoeae SK-93-1035] gi|291012221|gb|EFE04210.1| holliday junction DNA helicase RuvB [Neisseria gonorrhoeae DGI2] gi|291610457|gb|EFF39567.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae F62] gi|317164281|gb|ADV07822.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae TCDC-NG08107] Length = 343 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/319 (60%), Positives = 244/319 (76%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+ LRP+TL+++ GQ +A L +FI+AAK R EALDHVL GPPGLGKTTLA Sbjct: 23 AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNL+ DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FYE DL TIV Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L + +E A E+A RSRGTPRIA RLLRRVRDFA+V + I +ADAAL Sbjct: 203 SRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L + FGGGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ A+ H G+ + Sbjct: 323 TPRGRMATERAYLHFGLPV 341 >gi|282850100|ref|ZP_06259482.1| Holliday junction DNA helicase RuvB [Veillonella parvula ATCC 17745] gi|282580289|gb|EFB85690.1| Holliday junction DNA helicase RuvB [Veillonella parvula ATCC 17745] Length = 334 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/323 (59%), Positives = 241/323 (74%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+ +ED LRP+ E+ GQ EA NL V+I+AAK R EALDHVL GPPGLG Sbjct: 7 LVGNGEHEEDIWQYSLRPKLFNEYVGQEEAKGNLNVYIQAAKQRGEALDHVLLYGPPGLG 66 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A ELGVNFR TSGP I K+GDLAA+LTNL+D DVLFIDEIHRLS VEE+LY Sbjct: 67 KTTLAGIIANELGVNFRITSGPAIEKSGDLAAILTNLDDHDVLFIDEIHRLSRSVEEVLY 126 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMED+ +D+++G+GPSAR+V+I+L +FTL+ ATTR G L PL+DRFGI RL +Y+ Sbjct: 127 SAMEDYAIDIIIGKGPSARTVRIDLPKFTLVGATTRAGALAAPLRDRFGIINRLEYYKQP 186 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV R A++ + + A EIA RSRGTPRIA RLL+RVRDFA+V IT+EIA Sbjct: 187 ELEFIVSRAAEILNIGIVPTGASEIARRSRGTPRIANRLLKRVRDFAQVIGDGVITQEIA 246 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL RL +DKMG D++D R L I + GGPVGI+TI+A +SE RD IED+ EPY++Q Sbjct: 247 DEALQRLYVDKMGLDRIDRRVLECIIEKYDGGPVGIDTIAAAISEERDTIEDVYEPYLMQ 306 Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329 GF+ RTPRGR+ +A++HLGI Sbjct: 307 LGFLGRTPRGRVATKLAYEHLGI 329 >gi|71736556|ref|YP_275912.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. phaseolicola 1448A] gi|97190209|sp|Q48FC5|RUVB_PSE14 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|71557109|gb|AAZ36320.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323051|gb|EFW79140.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. glycinea str. B076] gi|320329677|gb|EFW85666.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. glycinea str. race 4] gi|330877978|gb|EGH12127.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. glycinea str. race 4] Length = 353 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 239/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLSLADYIGQPTVREQMELFIQAARGRNEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY I DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR+ AD AL L +D+ GFD Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPSR 336 >gi|319778461|ref|YP_004129374.1| Holliday junction DNA helicase RuvB [Taylorella equigenitalis MCE9] gi|317108485|gb|ADU91231.1| Holliday junction DNA helicase RuvB [Taylorella equigenitalis MCE9] Length = 363 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/332 (56%), Positives = 242/332 (72%), Gaps = 2/332 (0%) Query: 3 DREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 + G++ ++ S+ED+ LRP+TL+++ GQ + C L++FI+AAK R EALDHVL Sbjct: 12 NNRGIIQNDIADSREDSFEKALRPKTLDDYKGQDKVCQQLEIFIKAAKNRGEALDHVLLF 71 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+G R TSGPV+ K GDLAA+LTNL DVLFIDEIHRLS + Sbjct: 72 GPPGLGKTTLAHIIANEMGTKMRQTSGPVLEKPGDLAAILTNLNKNDVLFIDEIHRLSPV 131 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPA+EDFQ+D+M+G+GP+ARS+KI+L FTL+ ATTR G+LTNPL++RFGI RL Sbjct: 132 VEEILYPALEDFQIDIMIGDGPAARSIKIDLQPFTLVGATTRAGMLTNPLRNRFGIISRL 191 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E L IV R A+L G + ++ A EIA RSRGTPRIA RLLRRVRDFA+V + Sbjct: 192 EFYSTEHLAHIVTRSARLLGANIEEKGAFEIARRSRGTPRIANRLLRRVRDFADVKNNGL 251 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I+ EIA AL L +D +G D +D R L I F GGPVG++ ++A + E IE++I Sbjct: 252 ISDEIAAEALGMLEVDPIGLDNMDRRLLEAILLKFQGGPVGVDNLAAAIGEESHTIEEII 311 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQ GFIQRTPRGR+ AW H ++ P Sbjct: 312 EPYLIQHGFIQRTPRGRMATIHAWNHFNLNPP 343 >gi|66767464|ref|YP_242226.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv. campestris str. 8004] gi|81306556|sp|Q4UXL7|RUVB_XANC8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|66572796|gb|AAY48206.1| holliday junction binding protein, DNA helicase [Xanthomonas campestris pv. campestris str. 8004] Length = 346 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 193/332 (58%), Positives = 247/332 (74%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ + S +++A + +RP+ L ++ GQ ++++I+AAKAR EA+DHVL Sbjct: 1 MTEQRTIASSATREDEAADASIRPKRLADYLGQQPVRDQMEIYIQAAKARGEAMDHVLIF 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ V+A ELGVN R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS + Sbjct: 61 GPPGLGKTTLSHVIANELGVNLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY ++L IV R A + G+ T + A EIA R+RGTPRIA RLLRRVRDFA+V A Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPDGAAEIARRARGTPRIANRLLRRVRDFAQVKAAGH 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +A AA+ L +D GFD+LD R L I +F GGPVG+E+++A LSE R +ED+I Sbjct: 241 IDLAVAQAAMQMLKVDPEGFDELDRRMLRTIVDHFDGGPVGVESLAASLSEERGTLEDVI 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQQGF+ RT RGR++ P A+ HLG+ P Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPP 332 >gi|304396234|ref|ZP_07378116.1| Holliday junction DNA helicase RuvB [Pantoea sp. aB] gi|304356603|gb|EFM20968.1| Holliday junction DNA helicase RuvB [Pantoea sp. aB] Length = 334 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/319 (58%), Positives = 246/319 (77%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 ++S+E+ +RP+ L E+ GQ + +++FI+AA+ R +ALDH+L GPPGLGKTTL Sbjct: 12 SISEEEVIDRAIRPKMLTEYVGQPQVREQMEIFIKAAQLRGDALDHLLIFGPPGLGKTTL 71 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEEILYPAME Sbjct: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEILYPAME 131 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY+++DL+ Sbjct: 132 DYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVKDLQH 191 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R A GLA++DE A EIA R+RGTPRIA RLLRRVRDFAEV ++ E++ +AL Sbjct: 192 IVGRSAACLGLALSDEGALEIARRARGTPRIANRLLRRVRDFAEVRANGDLSGEVSCSAL 251 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L +D GFD +D + L I F GGPVG++ ++A + E R+ IED+IEP++IQQGFI Sbjct: 252 DMLNVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGFI 311 Query: 311 QRTPRGRLLMPIAWQHLGI 329 QRTPRGR+ A++H G+ Sbjct: 312 QRTPRGRMATQHAYRHFGM 330 >gi|77460628|ref|YP_350135.1| Holliday junction DNA helicase RuvB [Pseudomonas fluorescens Pf0-1] gi|97190226|sp|Q3K7W0|RUVB_PSEPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|77384631|gb|ABA76144.1| holliday junction DNA helicase [Pseudomonas fluorescens Pf0-1] Length = 353 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 239/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L E+ GQ +++FI+AA+ R+E+LDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 25 IRPVSLAEYIGQPTVREQMELFIQAARGRSESLDHTLIFGPPGLGKTTLANIIAQEMGVS 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAALLTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 85 IKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY DL TIV R A + GL Sbjct: 145 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSTADLATIVSRSANILGL 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E + EIA R+RGTPRIA RLLRRVRDFAEV IT+ +AD AL L +D+ GFD Sbjct: 205 PLDPEGSFEIARRARGTPRIANRLLRRVRDFAEVRAKGHITKSVADLALNLLDVDEHGFD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVGI++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 265 HQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 324 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 325 HAYLHFGLNIPTR 337 >gi|257487009|ref|ZP_05641050.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009349|gb|EGH89405.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 353 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 239/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLSLVDYIGQPTVREQMELFIQAARGRNEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY I DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV ITR+ AD AL L +D+ GFD Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPSR 336 >gi|332531312|ref|ZP_08407223.1| Holliday junction DNA helicase RuvB [Hylemonella gracilis ATCC 19624] gi|332039226|gb|EGI75641.1| Holliday junction DNA helicase RuvB [Hylemonella gracilis ATCC 19624] Length = 358 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/312 (60%), Positives = 236/312 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ++ L++FI AA+ R EALDHVL GPPGLGKTTL+ ++A+ELGVN Sbjct: 31 LRPKLLDEYVGQLKVREQLEIFIGAARKRGEALDHVLLFGPPGLGKTTLSHIIAQELGVN 90 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q+D+M+GEG Sbjct: 91 LRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEG 150 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV R AKL Sbjct: 151 PAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELTRIVTRSAKLLNA 210 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D A EIA RSRGTPRIA RLLRRVRD+A+V A IT+E+A AL+ L +D GFD Sbjct: 211 PMDDAGASEIARRSRGTPRIANRLLRRVRDYADVKGAGHITQEMAQKALVMLDVDPQGFD 270 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + F GGPVG++ I+A + E IED+IEPY+IQQGF+QRTPRGR+ Sbjct: 271 VMDRKLLEAVIHRFDGGPVGLDNIAASIGEEAGTIEDVIEPYLIQQGFLQRTPRGRVATL 330 Query: 322 IAWQHLGIDIPH 333 A++HLG+ P Sbjct: 331 AAYRHLGVAPPQ 342 >gi|188533632|ref|YP_001907429.1| Holliday junction DNA helicase RuvB [Erwinia tasmaniensis Et1/99] gi|238691997|sp|B2VJ95|RUVB_ERWT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|188028674|emb|CAO96536.1| Holliday junction ATP-dependent DNA helicase [Erwinia tasmaniensis Et1/99] Length = 334 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 193/330 (58%), Positives = 248/330 (75%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V S+E+ +RP+ L E+ GQ +++FI+AA R +ALDH+L Sbjct: 1 MIEADRLVSAGVISEEEVIDRAIRPKMLAEYVGQPVVREQMEIFIKAAMMRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY +EDL+ IV R A GL ++DE A EIA R+RGTPRIA RLLRRVRDFAEV Sbjct: 181 LEFYRVEDLQHIVGRSAACLGLPLSDEGALEIARRARGTPRIANRLLRRVRDFAEVRAGG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 ++ ++A AL L++D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 EMSGDVASRALDMLSVDSEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGFIQRTPRGR+ A++H GI Sbjct: 301 LEPYLIQQGFIQRTPRGRMATQHAYKHFGI 330 >gi|26987952|ref|NP_743377.1| Holliday junction DNA helicase RuvB [Pseudomonas putida KT2440] gi|37999645|sp|Q88NJ0|RUVB_PSEPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|24982664|gb|AAN66841.1|AE016312_12 Holliday junction DNA helicase RuvB [Pseudomonas putida KT2440] gi|313497568|gb|ADR58934.1| RuvB [Pseudomonas putida BIRD-1] Length = 348 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/321 (57%), Positives = 242/321 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ +RP +L+E+ GQ + +FI+AA+ R E+LDH L GPPGLGKTTLA + Sbjct: 15 REEVQDRAIRPLSLDEYIGQPVVREQMALFIQAARGRGESLDHTLIFGPPGLGKTTLANI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+GV+ +STSGP++ + GDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMEDFQ Sbjct: 75 IAHEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY +DL TIV Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNDKDLSTIVS 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + GLA+ D+ A EIA R+RGTPRIA RLLRRVRD+AEV IT+ +AD AL L Sbjct: 195 RSANILGLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADMALNLL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D+ GFD D R L + F GGPVG++ ++A +SE R IED++EPY+IQQG+I RT Sbjct: 255 DVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDVLEPYLIQQGYIMRT 314 Query: 314 PRGRLLMPIAWQHLGIDIPHR 334 PRGR++ A+ H G++IP R Sbjct: 315 PRGRVVTRHAYLHFGLNIPGR 335 >gi|148546489|ref|YP_001266591.1| Holliday junction DNA helicase RuvB [Pseudomonas putida F1] gi|166231541|sp|A5VZU7|RUVB_PSEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|148510547|gb|ABQ77407.1| Holliday junction DNA helicase subunit RuvB [Pseudomonas putida F1] Length = 348 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/321 (57%), Positives = 242/321 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ +RP +L+E+ GQ + +FI+AA+ R E+LDH L GPPGLGKTTLA + Sbjct: 15 REEVQDRAIRPLSLDEYIGQPVVREQMALFIQAARGRGESLDHTLIFGPPGLGKTTLANI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+GV+ +STSGP++ + GDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMEDFQ Sbjct: 75 IAHEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY +DL TIV Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNDKDLSTIVS 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + GLA+ D+ A EIA R+RGTPRIA RLLRRVRD+AEV IT+ +AD AL L Sbjct: 195 RSANILGLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADMALNLL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D+ GFD D R L + F GGPVG++ ++A +SE R IED++EPY+IQQG+I RT Sbjct: 255 DVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDVLEPYLIQQGYIMRT 314 Query: 314 PRGRLLMPIAWQHLGIDIPHR 334 PRGR++ A+ H G++IP R Sbjct: 315 PRGRVVTRHAYLHFGLNIPGR 335 >gi|197284987|ref|YP_002150859.1| Holliday junction DNA helicase RuvB [Proteus mirabilis HI4320] gi|227355391|ref|ZP_03839792.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] gi|238693146|sp|B4ETP8|RUVB_PROMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|194682474|emb|CAR42409.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis HI4320] gi|227164615|gb|EEI49486.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] Length = 336 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/330 (57%), Positives = 246/330 (74%), Gaps = 2/330 (0%) Query: 1 MMDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M++ + L+S ++ Q + +I +RP+ L E+ GQ + +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISADIQQPEEEIIDRAIRPKLLAEYVGQPQVREQMEIFIQAAKLRHDALDHLL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 IFGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L FTL+ ATTR G LT+PL+DRFGI Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQ 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL FY ++DL+ IV R A GL +T E A +IAMRSRGTPRI RLLRRVRDFA+V Sbjct: 181 RLEFYNVDDLQHIVARSASFMGLEITAEGARQIAMRSRGTPRITNRLLRRVRDFAQVKGN 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 I +IA AL L +D GFD LD + L I F GGPVG++ ++A + E R+ IED Sbjct: 241 GEIDEDIASKALDMLNVDAAGFDYLDRKLLFAIIDKFMGGPVGLDNLAAAIGEERETIED 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 ++EPY+IQQGFIQRTPRGR+ A++H Sbjct: 301 VLEPYLIQQGFIQRTPRGRVATNHAYRHFN 330 >gi|291617753|ref|YP_003520495.1| RuvB [Pantoea ananatis LMG 20103] gi|291152783|gb|ADD77367.1| RuvB [Pantoea ananatis LMG 20103] Length = 334 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/330 (57%), Positives = 253/330 (76%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S ++++E+ +RP+ L E+ GQ + +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRLISAASINEEEGLDRAIRPKMLTEYVGQPQVREQMEIFIKAAQLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY+++DL+ IV R A GLA+++EAA EIA RSRGTPRIA RLLRRVRDFAEV Sbjct: 181 LEFYQVKDLQHIVGRSAACLGLALSEEAALEIARRSRGTPRIANRLLRRVRDFAEVRANG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 ++ +++ AL L +D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 VLSGDVSVTALDMLNVDSEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 IEP++IQQGFIQRTPRGR+ A++H GI Sbjct: 301 IEPFLIQQGFIQRTPRGRMATQHAYRHFGI 330 >gi|222109716|ref|YP_002551980.1| holliday junction DNA helicase ruvb [Acidovorax ebreus TPSY] gi|221729160|gb|ACM31980.1| Holliday junction DNA helicase RuvB [Acidovorax ebreus TPSY] Length = 356 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 192/320 (60%), Positives = 238/320 (74%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+A LRP+ L+E+ GQ +A L++FI AAK R EALDHVL GPPGLGKTTL+ Sbjct: 27 SQEEALERALRPKLLQEYVGQAKAREQLEIFIGAAKKRGEALDHVLLFGPPGLGKTTLSH 86 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 87 IIATELGVNLRQTSGPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDY 146 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 147 QIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELARIV 206 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L G + E EIA RSRGTPRIA RLLRRVRD+AEV + IT +IA+ AL Sbjct: 207 MRSAGLLGAPIDAEGGMEIARRSRGTPRIANRLLRRVRDYAEVKGSGHITLDIANRALTM 266 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D GFD +D + L + F GGPVG++ I+A + E IED+IEPY+IQQG++QR Sbjct: 267 LDVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGYLQR 326 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ A++HLG+ P Sbjct: 327 TPRGRVATLAAYRHLGVAPP 346 >gi|269963131|ref|ZP_06177466.1| Holliday junction DNA helicase RuvB [Vibrio harveyi 1DA3] gi|269832095|gb|EEZ86219.1| Holliday junction DNA helicase RuvB [Vibrio harveyi 1DA3] Length = 334 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/322 (58%), Positives = 243/322 (75%), Gaps = 2/322 (0%) Query: 11 NVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 N S D D+ +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKT Sbjct: 12 NPSFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKT 71 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPA Sbjct: 72 TLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPA 131 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+++DL Sbjct: 132 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVKDL 191 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + IVQR A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I E+AD Sbjct: 192 QDIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAEVADK 251 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG Sbjct: 252 ALNMLDVDAKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQG 311 Query: 309 FIQRTPRGRLLMPIAWQHLGID 330 ++QRTPRGR+ A+ H GI+ Sbjct: 312 YLQRTPRGRIATDRAYLHFGIE 333 >gi|237748981|ref|ZP_04579461.1| holliday junction DNA helicase B [Oxalobacter formigenes OXCC13] gi|229380343|gb|EEO30434.1| holliday junction DNA helicase B [Oxalobacter formigenes OXCC13] Length = 355 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/319 (58%), Positives = 238/319 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L E+ GQ + L++FI AAK R EALDH L GPPGLGKTTLA + Sbjct: 22 NEEAIERALRPKLLNEYVGQHKTREQLEIFIAAAKKRNEALDHTLLFGPPGLGKTTLAHI 81 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ +AGDLAA+LTNLE DVLFIDEIHR+S +VEEILYPA+ED+Q Sbjct: 82 IAREMGVNLRQTSGPVLERAGDLAAILTNLEANDVLFIDEIHRMSPVVEEILYPALEDYQ 141 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+++GEGP+ARSVK++L FTLI ATTR G+LTNPL+DRFG+ RL FY+I+DL IV Sbjct: 142 IDILIGEGPAARSVKLDLQPFTLIGATTRAGMLTNPLRDRFGVVARLEFYDIDDLTRIVT 201 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + +E A EIA R+RGTPRIA RLLRRVRD+AEV IT ++ADAAL L Sbjct: 202 RSAMLLKAPIVEEGAREIARRARGTPRIANRLLRRVRDYAEVKGTGKITHDMADAALKML 261 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L + F GGPVGI ++A + E D IED++EPY+IQQG++QRT Sbjct: 262 DVDPVGFDLMDRKLLEAVLFKFSGGPVGIANLAAAIGEEVDTIEDVLEPYLIQQGYLQRT 321 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ ++H GI P Sbjct: 322 PRGRIATTATYRHFGIAAP 340 >gi|269797655|ref|YP_003311555.1| Holliday junction DNA helicase RuvB [Veillonella parvula DSM 2008] gi|269094284|gb|ACZ24275.1| Holliday junction DNA helicase RuvB [Veillonella parvula DSM 2008] Length = 334 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/323 (59%), Positives = 241/323 (74%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+ +ED LRP+ E+ GQ EA NL V+I+AAK R EALDHVL GPPGLG Sbjct: 7 LVGNGEHEEDIWQYSLRPKFFNEYVGQEEAKGNLNVYIQAAKQRGEALDHVLLYGPPGLG 66 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A ELGVNFR TSGP I K+GDLAA+LTNL+D DVLFIDEIHRLS VEE+LY Sbjct: 67 KTTLAGIIANELGVNFRITSGPAIEKSGDLAAILTNLDDHDVLFIDEIHRLSRSVEEVLY 126 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMED+ +D+++G+GPSAR+V+I+L +FTL+ ATTR G L PL+DRFGI RL +Y+ Sbjct: 127 SAMEDYAIDIIIGKGPSARTVRIDLPKFTLVGATTRAGALAAPLRDRFGIINRLEYYKQP 186 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV R A++ + + A EIA RSRGTPRIA RLL+RVRDFA+V IT+EIA Sbjct: 187 ELEFIVSRAAEILNIGIVPTGASEIARRSRGTPRIANRLLKRVRDFAQVIGDGVITQEIA 246 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL RL +DKMG D++D R L I + GGPVGI+TI+A +SE RD IED+ EPY++Q Sbjct: 247 DEALQRLYVDKMGLDRIDRRVLECIIEKYDGGPVGIDTIAAAISEERDTIEDVYEPYLMQ 306 Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329 GF+ RTPRGR+ +A++HLGI Sbjct: 307 LGFLGRTPRGRVATKLAYEHLGI 329 >gi|332534226|ref|ZP_08410071.1| holliday junction DNA helicase RuvB [Pseudoalteromonas haloplanktis ANT/505] gi|332036306|gb|EGI72777.1| holliday junction DNA helicase RuvB [Pseudoalteromonas haloplanktis ANT/505] Length = 335 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/317 (58%), Positives = 238/317 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + ED+ +RP+ L ++ GQ +++FIEAA+ R EALDH+L GPPGLGKTTLA Sbjct: 14 TNEDSIDRAIRPKLLADYRGQPHVKQQMEIFIEAARTRGEALDHLLIFGPPGLGKTTLAN 73 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VA EL V+ ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS VEEILYPAMED+ Sbjct: 74 IVANELHVSIKTTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSPQVEEILYPAMEDY 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY +EDL IV Sbjct: 134 QLDIMIGEGPAARSIKLDLPAFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLSHIV 193 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A GL + D+ A EIA RSRGTPRIA RLLRRVRD+ +V T+ ++A AL Sbjct: 194 GRSAHYLGLEMCDDGATEIAQRSRGTPRIANRLLRRVRDYTQVKSDGTVNADVAKQALDM 253 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 + +DK GFD +D +YL I F GGPVG++ ++A + E R+ IED+IEP++IQQGFIQR Sbjct: 254 IDVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNVAAAIGEERETIEDVIEPFLIQQGFIQR 313 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR++ A+ H G+ Sbjct: 314 TPRGRIVSDSAYHHFGL 330 >gi|163802050|ref|ZP_02195946.1| Holliday junction DNA helicase B [Vibrio sp. AND4] gi|159174191|gb|EDP58999.1| Holliday junction DNA helicase B [Vibrio sp. AND4] Length = 334 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/322 (58%), Positives = 242/322 (75%), Gaps = 2/322 (0%) Query: 11 NVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 N S D D+ +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKT Sbjct: 12 NPSFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQQRNEALDHLLIFGPPGLGKT 71 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPA Sbjct: 72 TLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPA 131 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+++DL Sbjct: 132 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVQDL 191 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 K IVQR A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I + AD Sbjct: 192 KDIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADTADK 251 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG Sbjct: 252 ALNMLDVDAKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQG 311 Query: 309 FIQRTPRGRLLMPIAWQHLGID 330 ++QRTPRGR+ A+ H GI+ Sbjct: 312 YLQRTPRGRIATDRAYLHFGIE 333 >gi|54308310|ref|YP_129330.1| Holliday junction DNA helicase RuvB [Photobacterium profundum SS9] gi|62288987|sp|Q6LT48|RUVB_PHOPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|46912738|emb|CAG19528.1| putative holliday junction DNA helicase RuvB [Photobacterium profundum SS9] Length = 337 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/335 (56%), Positives = 248/335 (74%), Gaps = 2/335 (0%) Query: 1 MMDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M++ + L+S + D ++ +RP+ L ++ GQ +++FI+AA+ R EALDH+L Sbjct: 1 MIEADRLISNSFESRDDEVIDRAIRPKLLNDYQGQDHVRGQMEIFIKAAQLREEALDHLL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 IFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLS 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI Sbjct: 121 PHVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQ 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL +Y+++DLK IVQR A GL++ +E A E+A R+RGTPRIA RLLRRVRD+AEV Sbjct: 181 RLEYYKVDDLKDIVQRSANCLGLSMEEEGALEMAQRARGTPRIANRLLRRVRDYAEVVGN 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 I + A AL L +D GFD +D + L I F GGPVG++ ++A + E +D IED Sbjct: 241 GIICSDTAKKALDMLDVDSSGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEEKDTIED 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++EPY+IQQGF+QRTPRGR+ A+ H G+DIP Sbjct: 301 VLEPYLIQQGFLQRTPRGRIATHRAYLHFGLDIPE 335 >gi|28897826|ref|NP_797431.1| Holliday junction DNA helicase RuvB [Vibrio parahaemolyticus RIMD 2210633] gi|153839743|ref|ZP_01992410.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus AQ3810] gi|260361756|ref|ZP_05774781.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus K5030] gi|260876985|ref|ZP_05889340.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus AN-5034] gi|31076901|sp|Q87QU7|RUVB_VIBPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|28806039|dbj|BAC59315.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus RIMD 2210633] gi|149746741|gb|EDM57729.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus AQ3810] gi|308093890|gb|EFO43585.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus AN-5034] gi|308113263|gb|EFO50803.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus K5030] Length = 334 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/316 (58%), Positives = 241/316 (76%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ +++FI+AA+ R+EALDH+L GPPGLGKTTLA +V Sbjct: 18 EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIV 77 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL Sbjct: 78 ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+++DL+ IVQR Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVQDLQNIVQR 197 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I ++AD AL L Sbjct: 198 SADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLD 257 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP Sbjct: 258 VDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 317 Query: 315 RGRLLMPIAWQHLGID 330 RGR+ A+ H GI+ Sbjct: 318 RGRIATDRAYLHFGIE 333 >gi|304407533|ref|ZP_07389185.1| Holliday junction DNA helicase RuvB [Paenibacillus curdlanolyticus YK9] gi|304343484|gb|EFM09326.1| Holliday junction DNA helicase RuvB [Paenibacillus curdlanolyticus YK9] Length = 336 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 193/332 (58%), Positives = 248/332 (74%), Gaps = 1/332 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+ E ++S N+ ED + L LRPR L E+ GQ NLKVFIEAAK R EALDHVL Sbjct: 1 MEDERIISANLMMEDQAVELSLRPRYLAEYIGQSNVKENLKVFIEAAKLRKEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ ++A ELGV+ R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL+ Sbjct: 61 GPPGLGKTTLSNIIANELGVSLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLNRS 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD+M+G+GPSARSV+++L FTLI ATTR GLL+ PL+DRFG+ RL Sbjct: 121 VEEVLYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y+ ++L IV R + + G+++ EAA EIA+RSRGTPRIA RLL+RVRDFA+V Sbjct: 181 EYYKTDELAFIVSRASDILGVSIVGEAATEIALRSRGTPRIANRLLKRVRDFAQVRGDGI 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT E+A AL L +D MG D +D + L + +F GGPVG++TI+A + E IED+ Sbjct: 241 ITHELARYALELLRVDPMGLDAIDHKMLRAMIESFRGGPVGLDTIAATIGEESQTIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q G +QRTPRGR+ P A++HLGI +P Sbjct: 301 EPYLMQVGLLQRTPRGRIATPQAYRHLGIPVP 332 >gi|301155729|emb|CBW15197.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Haemophilus parainfluenzae T3T1] Length = 322 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/318 (58%), Positives = 239/318 (75%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ + + +FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 3 EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 62 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QL Sbjct: 63 ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 122 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY +EDL +IV R Sbjct: 123 DIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTR 182 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + D+AA E+A RSRGTPRIA RLLRRVRDFA+V + I+ +IA AL L Sbjct: 183 SASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDGIISADIAKQALSMLD 242 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD LD + LT + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP Sbjct: 243 VDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 302 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ + ++H G+ P Sbjct: 303 RGRIATSLTYRHFGLQKP 320 >gi|330872652|gb|EGH06801.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964825|gb|EGH65085.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 353 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/337 (57%), Positives = 250/337 (74%), Gaps = 4/337 (1%) Query: 1 MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M+D + L++ V D D L +RP +L ++ GQ +++FI+AA+ R EALDH Sbjct: 1 MIDADRLIT-AVGGRDRDEQLDRAIRPLSLADYIGQPTVREQMELFIQAARGRNEALDHT 59 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRL Sbjct: 60 LIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRL 119 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI Sbjct: 120 SPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIV 179 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL FY I DL TIV R A + GL + E A EIA R+RGTPRIA RLLRRVRDFA+V Sbjct: 180 QRLEFYNIADLSTIVARSAGILGLVIEPEGAFEIARRARGTPRIANRLLRRVRDFAQVRG 239 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 ITR+ AD AL L +D+ GFD D R L + F GGPVG+++++A +SE R IE Sbjct: 240 NGQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIE 299 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 D++EPY+IQQG+I RTPRGR++ A+ H G++IP R Sbjct: 300 DVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPAR 336 >gi|91227613|ref|ZP_01261917.1| Holliday junction DNA helicase B [Vibrio alginolyticus 12G01] gi|91188506|gb|EAS74799.1| Holliday junction DNA helicase B [Vibrio alginolyticus 12G01] Length = 334 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/316 (59%), Positives = 241/316 (76%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ +++FI+AA+ R+EALDH+L GPPGLGKTTLA +V Sbjct: 18 EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIV 77 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL Sbjct: 78 ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL FY+I+DL+ IVQR Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEFYKIKDLQDIVQR 197 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I ++AD AL L Sbjct: 198 SADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLD 257 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP Sbjct: 258 VDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 317 Query: 315 RGRLLMPIAWQHLGID 330 RGR+ A+ H GI+ Sbjct: 318 RGRIATDRAYLHFGIE 333 >gi|308187171|ref|YP_003931302.1| Holliday junction ATP-dependent DNA helicase ruvB [Pantoea vagans C9-1] gi|308057681|gb|ADO09853.1| Holliday junction ATP-dependent DNA helicase ruvB [Pantoea vagans C9-1] Length = 334 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/319 (58%), Positives = 246/319 (77%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 ++++E+ +RP+ L E+ GQ + +++FI+AA+ R +ALDH+L GPPGLGKTTL Sbjct: 12 SINEEEIIDRAIRPKMLTEYVGQPQVREQMEIFIKAAQLRGDALDHLLIFGPPGLGKTTL 71 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAME Sbjct: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY+++DL+ Sbjct: 132 DYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVKDLQH 191 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R A GLA++DE A EIA R+RGTPRIA RLLRRVRDFAEV ++ E++ +AL Sbjct: 192 IVGRSAACLGLALSDEGALEIARRARGTPRIANRLLRRVRDFAEVRANGDMSGEVSCSAL 251 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L +D GFD +D + L I F GGPVG++ ++A + E R+ IED+IEP++IQQGFI Sbjct: 252 DMLNVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGFI 311 Query: 311 QRTPRGRLLMPIAWQHLGI 329 QRTPRGRL A++H GI Sbjct: 312 QRTPRGRLATQHAYRHFGI 330 >gi|254787340|ref|YP_003074769.1| Holliday junction DNA helicase RuvB [Teredinibacter turnerae T7901] gi|259495679|sp|C5BQT4|RUVB_TERTT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|237683928|gb|ACR11192.1| Holliday junction DNA helicase RuvB [Teredinibacter turnerae T7901] Length = 347 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/333 (57%), Positives = 250/333 (75%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M+D++ ++ + S +ED +RP+ L E+ GQ +++FI AA+ R EALDH L Sbjct: 1 MIDQDRIVDGHASGREDQLDRAVRPKRLAEYIGQPAVREQMEIFIGAARLREEALDHTLV 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+G + ++TSGPV+ KAGDLAAL+TNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIATEMGGDLKTTSGPVLDKAGDLAALMTNLEAGDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMEDFQLD+M+G+GP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDFQLDIMIGDGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL IV+R A+L+G+A+ + EIA R+RGTPRIA RLLRRVRD+AEV Sbjct: 181 LEFYSVQDLTHIVKRSAQLSGVAMEEAGGMEIARRARGTPRIANRLLRRVRDYAEVKGDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT IAD+AL L +D GFD +D R L + FGGGPVG+++++A +SE RD IED+ Sbjct: 241 VITAAIADSALNMLNVDHHGFDHMDRRLLLALIEKFGGGPVGVDSLAAAISEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQGF+ RTPRGR+ A+ H GI P Sbjct: 301 LEPYLIQQGFLVRTPRGRMATQNAYNHFGILAP 333 >gi|145297805|ref|YP_001140646.1| Holliday junction DNA helicase RuvB [Aeromonas salmonicida subsp. salmonicida A449] gi|166231460|sp|A4SJ26|RUVB_AERS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|142850577|gb|ABO88898.1| holliday junction DNA helicase RuvB [Aeromonas salmonicida subsp. salmonicida A449] Length = 336 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/333 (57%), Positives = 247/333 (74%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S +ED I +RP+ L ++TGQ C +++FIEAA+ R EALDH+L Sbjct: 1 MIEADRLISATGVREDEIIDRAIRPKMLADYTGQDPVCEQMEIFIEAARQRGEALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL IV R A+ GL +T + A E+A RSRGTPRIA RLLRRVRDFA+V Sbjct: 181 LEFYNVKDLTDIVSRSARCLGLEMTGDGALELARRSRGTPRIANRLLRRVRDFAQVKSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I IA A+ L +D GFD +D + L + F GGPVG++ ++A + E +D IED+ Sbjct: 241 RIDGPIAARAMDMLDVDNEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEEKDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQG++QRTPRGR+ P A+ H G+ P Sbjct: 301 LEPYLIQQGYLQRTPRGRMATPRAYAHFGLQRP 333 >gi|257454448|ref|ZP_05619710.1| holliday junction DNA helicase RuvB [Enhydrobacter aerosaccus SK60] gi|257448214|gb|EEV23195.1| holliday junction DNA helicase RuvB [Enhydrobacter aerosaccus SK60] Length = 327 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/313 (61%), Positives = 237/313 (75%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+S ED + + +RP L E+ GQ + VFI AA +R EALDH L GPPGLG Sbjct: 14 LISPMGRSEDQNDNNIRPALLAEYIGQPVVKEQMGVFINAALSRKEALDHTLIFGPPGLG 73 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++ARE+G N RSTSGPV+ +AGDLAA+LTNLE DVLFIDEIHRLS ++EEILY Sbjct: 74 KTTLANIIAREMGGNLRSTSGPVLERAGDLAAMLTNLEPGDVLFIDEIHRLSPMIEEILY 133 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLD+M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL FY + Sbjct: 134 PAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYNVA 193 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 DL TIV R A L + +T E A E+A RSRGTPRIA RLLRRVRD+A+V T+T EIA Sbjct: 194 DLTTIVTRSAGLLNVPMTKEGAVEVARRSRGTPRIANRLLRRVRDYAQVKGDGTVTAEIA 253 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 +AL LA+DK G D LD RYL M+ F GGP G+E+I+A L+E R +ED+IEPY+IQ Sbjct: 254 HSALDMLAVDKRGLDNLDRRYLEMLEERFNGGPAGVESIAAALAEDRGTLEDVIEPYLIQ 313 Query: 307 QGFIQRTPRGRLL 319 QG+I RT RGR+L Sbjct: 314 QGYIVRTARGRML 326 >gi|254516708|ref|ZP_05128767.1| Holliday junction DNA helicase RuvB [gamma proteobacterium NOR5-3] gi|219675131|gb|EED31498.1| Holliday junction DNA helicase RuvB [gamma proteobacterium NOR5-3] Length = 356 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/322 (57%), Positives = 245/322 (76%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 + EDA +RP++L E+ GQ A +++F+ AAK R E LDH L GPPGLGKTTL Sbjct: 13 TTANEDALDRAVRPKSLAEYIGQPVAREQMEIFLAAAKGREEPLDHTLIFGPPGLGKTTL 72 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+GV+ ++TSGPV+ KAGD+AAL+TNLE DVLFIDEIHRLS VEEILYPAME Sbjct: 73 ASIIANEMGVSLKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLSPFVEEILYPAME 132 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+QLD+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY ++DL Sbjct: 133 DYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYAVDDLAV 192 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R A++ G+ + + A EIA R+RGTPRIA RLLRRVRD+AEV T+ R+IAD AL Sbjct: 193 IVARSARILGIPMDEAGAREIARRARGTPRIANRLLRRVRDYAEVKGDGTVNRDIADRAL 252 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L++D GFD LD R L + F GGPVG+++++A LSE R IED++EP++IQQG++ Sbjct: 253 DLLSVDAKGFDHLDRRLLLAMIEKFDGGPVGVDSLAAALSEERGTIEDVLEPFLIQQGYM 312 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 RTPRGR++ +A+QH G+ +P Sbjct: 313 IRTPRGRMVTRLAYQHFGVPMP 334 >gi|271500731|ref|YP_003333756.1| Holliday junction DNA helicase RuvB [Dickeya dadantii Ech586] gi|270344286|gb|ACZ77051.1| Holliday junction DNA helicase RuvB [Dickeya dadantii Ech586] Length = 336 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/312 (59%), Positives = 239/312 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L E+ GQ +++FIEAA+ R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKLLSEYVGQPVVREQMEIFIEAARKRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 83 LRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY++ DL+ IVQR A+ GL Sbjct: 143 PAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVQRSAQCLGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T + A EIA RSRGTPRIA RLLRRVRDF+EV I+ ++A AL LA+D GFD Sbjct: 203 DMTGDGALEIARRSRGTPRIANRLLRRVRDFSEVKSDGAISADVAVQALDMLAVDSEGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+ Sbjct: 263 YMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRIATQ 322 Query: 322 IAWQHLGIDIPH 333 A++H G+ H Sbjct: 323 HAYRHFGLTREH 334 >gi|146283143|ref|YP_001173296.1| Holliday junction DNA helicase RuvB [Pseudomonas stutzeri A1501] gi|166231542|sp|A4VNA3|RUVB_PSEU5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|145571348|gb|ABP80454.1| Holliday junction DNA helicase RuvB [Pseudomonas stutzeri A1501] gi|327481496|gb|AEA84806.1| Holliday junction DNA helicase RuvB [Pseudomonas stutzeri DSM 4166] Length = 350 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/327 (59%), Positives = 240/327 (73%), Gaps = 3/327 (0%) Query: 11 NVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 S D D L +RP L E+ GQ + +FI AAK R EALDH L GPPGLGK Sbjct: 9 TASSRDRDEQLDRAIRPLKLAEYIGQPVVREQMDLFIRAAKGRQEALDHTLIFGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A E+GV+ +STSGPV+ + GDLAALLTNLE DVLF+DEIHRLS IVEE+LYP Sbjct: 69 TTLANIIAEEMGVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYP 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMEDFQLD+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY ED Sbjct: 129 AMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSTED 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV+R A + GL E A EIA R+RGTPRIA RLLRRVRDFA+V ITR+IAD Sbjct: 189 LATIVRRSAGILGLPTEPEGAFEIARRARGTPRIANRLLRRVRDFAQVRGKGEITRQIAD 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D+ GFD D R L + F GGPVGI++++A +SE R IED++EPY+IQQ Sbjct: 249 LALNMLDVDERGFDHQDRRLLLTLIEKFDGGPVGIDSLAAAISEERHTIEDVLEPYLIQQ 308 Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPHR 334 G+I RTPRGR++ A+ H G+++P R Sbjct: 309 GYIMRTPRGRVVTRHAYLHFGLNLPKR 335 >gi|227329528|ref|ZP_03833552.1| Holliday junction DNA helicase RuvB [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 336 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/330 (57%), Positives = 250/330 (75%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + E+ I +RP+ L E+ GQ + +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRLISADAVPEEEFIDRAIRPKLLTEYVGQPQVREQMEIFIQAARKRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNMRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++EDL+ IV R A+ GL +T + A E+A R+RGTPRIA RLLRRVRDF+EV Sbjct: 181 LEFYKVEDLQYIVSRSAQCLGLDLTSDGALEVARRARGTPRIANRLLRRVRDFSEVKSEG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT ++A AL LA+D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AITGDVATQALDMLAVDTEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EP++IQQGFIQRTPRGR+ A++H G+ Sbjct: 301 LEPFLIQQGFIQRTPRGRMATQHAYRHFGL 330 >gi|269967686|ref|ZP_06181736.1| Holliday junction DNA helicase RuvB [Vibrio alginolyticus 40B] gi|269827773|gb|EEZ82057.1| Holliday junction DNA helicase RuvB [Vibrio alginolyticus 40B] Length = 359 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/315 (59%), Positives = 240/315 (76%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ +++FI+AA+ R+EALDH+L GPPGLGKTTLA +V Sbjct: 45 EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIV 104 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL Sbjct: 105 ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 164 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL FY+I+DL+ IVQR Sbjct: 165 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEFYKIKDLQDIVQR 224 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I ++AD AL L Sbjct: 225 SADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLD 284 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP Sbjct: 285 VDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 344 Query: 315 RGRLLMPIAWQHLGI 329 RGR+ A+ H GI Sbjct: 345 RGRIATDRAYLHFGI 359 >gi|58581286|ref|YP_200302.1| Holliday junction DNA helicase RuvB [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623204|ref|YP_450576.1| Holliday junction DNA helicase B [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166712988|ref|ZP_02244195.1| Holliday junction DNA helicase B [Xanthomonas oryzae pv. oryzicola BLS256] gi|188577433|ref|YP_001914362.1| Holliday junction DNA helicase RuvB [Xanthomonas oryzae pv. oryzae PXO99A] gi|289661902|ref|ZP_06483483.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289666993|ref|ZP_06488068.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv. musacearum NCPPB4381] gi|81311909|sp|Q5H2A4|RUVB_XANOR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|97190463|sp|Q2P575|RUVB_XANOM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238689461|sp|B2STK0|RUVB_XANOP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|58425880|gb|AAW74917.1| holliday junction binding protein DNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367144|dbj|BAE68302.1| holliday junction binding protein DNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521885|gb|ACD59830.1| holliday junction DNA helicase RuvB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 345 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 193/331 (58%), Positives = 247/331 (74%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD+ + S + ++DA + +RP+ L ++ GQ ++++I+AAKAR EA+DHVL G Sbjct: 1 MDQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIFG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS +V Sbjct: 61 PPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPVV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL Sbjct: 121 EEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY ++L IV R A + G+ T E A EIA R+RGTPRIA RLLRRVRD+A+V A I Sbjct: 181 FYSPQELTRIVIRSAAILGIDCTPEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGHI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 +A AA+ L +D GFD+LD R L I +F GGPVG+E+++A LSE R +ED+IE Sbjct: 241 DLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVIE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY+IQQGF+ RT RGR++ A+ HLG+ P Sbjct: 301 PYLIQQGFLIRTARGRMVTTKAYLHLGLKPP 331 >gi|240112975|ref|ZP_04727465.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae MS11] gi|268599055|ref|ZP_06133222.1| holliday junction DNA helicase RuvB [Neisseria gonorrhoeae MS11] gi|268583186|gb|EEZ47862.1| holliday junction DNA helicase RuvB [Neisseria gonorrhoeae MS11] Length = 343 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/319 (60%), Positives = 244/319 (76%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +QE+ LRP+TL+++ GQ +A L +FI+AAK R EALDHVL GPPGLGKTTLA Sbjct: 23 AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNL+ DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FYE DL TIV Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENCDLTTIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L L + +E A E+A RSRGTPRIA RLLRRVRDFA+V + I +ADAAL Sbjct: 203 SRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L + FGGGPVG++ ++A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ A+ H G+ + Sbjct: 323 TPRGRMATERAYLHFGLPV 341 >gi|328473202|gb|EGF44050.1| Holliday junction DNA helicase RuvB [Vibrio parahaemolyticus 10329] Length = 334 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/316 (58%), Positives = 240/316 (75%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ +++FI+AA+ R+EALDH+L GPPGLGKTTLA +V Sbjct: 18 EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIV 77 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL Sbjct: 78 ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y++ DL+ IVQR Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVHDLQNIVQR 197 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I ++AD AL L Sbjct: 198 SADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLD 257 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP Sbjct: 258 VDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 317 Query: 315 RGRLLMPIAWQHLGID 330 RGR+ A+ H GI+ Sbjct: 318 RGRIATDRAYLHFGIE 333 >gi|293395810|ref|ZP_06640092.1| crossover junction endoribonuclease subunit B [Serratia odorifera DSM 4582] gi|291421747|gb|EFE94994.1| crossover junction endoribonuclease subunit B [Serratia odorifera DSM 4582] Length = 334 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/331 (57%), Positives = 250/331 (75%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S +++E+ +RP+ L E+ GQ +++FI+AAK R++ALDH+L Sbjct: 1 MIEADRLISAEPITEEEVIDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRSDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A GL+++ E + EIA R+RGTPRIA RLLRRVRDFAEV Sbjct: 181 LEFYQVADLEHIVSRSAHCLGLSLSTEGSHEIARRARGTPRIANRLLRRVRDFAEVRANG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ E+A AL L +D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 QISGEVAAQALNMLNVDAEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 IEP++IQQGFIQRTPRGR+ A++H GI+ Sbjct: 301 IEPFLIQQGFIQRTPRGRMATLHAYKHFGIE 331 >gi|312797267|ref|YP_004030189.1| Holliday junction DNA helicase ruvB [Burkholderia rhizoxinica HKI 454] gi|312169042|emb|CBW76045.1| Holliday junction DNA helicase ruvB [Burkholderia rhizoxinica HKI 454] Length = 367 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/311 (62%), Positives = 239/311 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L+E+ GQ + L++FIEAAK R+EALDHVL GPPGLGKTTLA +VARE+GVN Sbjct: 43 LRPRLLDEYVGQEKVRGQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAHIVAREMGVN 102 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q+D+M+GEG Sbjct: 103 LRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEG 162 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY +L IV+R A L G Sbjct: 163 PAARSVKLDLHPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAGELARIVERSAHLLGA 222 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A EIA RSRGTPRIA RLLRRVRD+AEV IT ADAAL L +D +GFD Sbjct: 223 QIESEGALEIARRSRGTPRIANRLLRRVRDYAEVKSDGRITATTADAALAMLDVDPVGFD 282 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E RD IED+IEPY+IQQG++QRTPRGR+ Sbjct: 283 LMDRKLLEAILHKFDGGPVGLDNLAAAIGEERDTIEDVIEPYLIQQGYLQRTPRGRVATL 342 Query: 322 IAWQHLGIDIP 332 +A++H G+ P Sbjct: 343 LAYRHFGLAAP 353 >gi|319943008|ref|ZP_08017291.1| crossover junction ATP-dependent DNA helicase RuvB [Lautropia mirabilis ATCC 51599] gi|319743550|gb|EFV95954.1| crossover junction ATP-dependent DNA helicase RuvB [Lautropia mirabilis ATCC 51599] Length = 353 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/319 (58%), Positives = 241/319 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QE+ LRPR L ++ GQ + L +FIEA++ R EALDHVL GPPGLGKTTLA + Sbjct: 24 QEEQLEKALRPRRLADYVGQRKIRQQLDIFIEASRRRQEALDHVLLFGPPGLGKTTLAHI 83 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+GVN + TSGPV+ + GDLAALLT L+ DVLFIDEIHRLS +VEEILYPA+EDFQ Sbjct: 84 IAAEMGVNLKQTSGPVLERPGDLAALLTGLDRNDVLFIDEIHRLSPVVEEILYPALEDFQ 143 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+K++++ FTL+ ATTR G+LTNPL+DRFGI RL FYE ++L++IV Sbjct: 144 IDIMIGEGPAARSIKLDIAPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYETDELQSIVL 203 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A+L G + ++ A EIA RSRGTPRIA RLLRRVRD+AE+ IT +AD AL L Sbjct: 204 RSARLLGADIAEDGANEIARRSRGTPRIANRLLRRVRDYAEIRADGRITGRVADDALGML 263 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +G D +D + L I FGGGPVG++ I+A + E RD IED+IEPY+IQQG +QRT Sbjct: 264 DVDPIGLDIMDRKLLEAIIERFGGGPVGLDNIAAAIGEVRDTIEDVIEPYLIQQGLLQRT 323 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR++ W+H G+ +P Sbjct: 324 PRGRMVTATTWEHFGLPVP 342 >gi|312962758|ref|ZP_07777246.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] gi|311282975|gb|EFQ61568.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] Length = 352 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/313 (59%), Positives = 239/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R+E+LDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLSLADYIGQPTVREQMELFIQAARGRSESLDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAALLTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSTADLATIVSRSASILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A EIA R+RGTPRIA RLLRRVRDFAEV IT+ +AD AL L +D+ GFD Sbjct: 204 PLDPEGAFEIARRARGTPRIANRLLRRVRDFAEVRAKGHITKAVADLALNLLDVDEHGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPSR 336 >gi|78221966|ref|YP_383713.1| Holliday junction DNA helicase RuvB [Geobacter metallireducens GS-15] gi|97190079|sp|Q39XN6|RUVB_GEOMG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|78193221|gb|ABB30988.1| Holliday junction DNA helicase RuvB [Geobacter metallireducens GS-15] Length = 338 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/322 (57%), Positives = 245/322 (76%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L++ +++++D S LRPR L+++ GQ +A NL+VFI+AA+ R EALDHVL GPPGLG Sbjct: 4 LVTPDITEDDLIESSLRPRALDDYIGQEKAKGNLRVFIDAARKRGEALDHVLLYGPPGLG 63 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE DVLFIDEIHRLS +VEEILY Sbjct: 64 KTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILY 123 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED+QLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+ RL FY + Sbjct: 124 PAMEDYQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTDD 183 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L TIV R A++ + + E E+A RSRGTPRIA RLLRRVRDFA+V IT + Sbjct: 184 ELTTIVTRSARILNIGIEPEGGRELARRSRGTPRIANRLLRRVRDFAQVRADGVITAPVV 243 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D +L L ID+ GFD +D + I FGGGPVG++TI+A + E RD IED+ EP++IQ Sbjct: 244 DESLKLLEIDEKGFDHMDRTIMLTIIDKFGGGPVGLDTIAAAIGEERDTIEDVYEPFLIQ 303 Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328 GFI RTPRGR+ A++H G Sbjct: 304 HGFINRTPRGRVATRAAYEHFG 325 >gi|330892241|gb|EGH24902.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. mori str. 301020] Length = 353 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 239/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R+EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY I DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRV DFAEV ITR+ AD AL L +D+ GFD Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVGDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVGI++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPSR 336 >gi|317048519|ref|YP_004116167.1| Holliday junction DNA helicase RuvB [Pantoea sp. At-9b] gi|316950136|gb|ADU69611.1| Holliday junction DNA helicase RuvB [Pantoea sp. At-9b] Length = 334 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/330 (57%), Positives = 251/330 (76%), Gaps = 1/330 (0%) Query: 1 MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S +V++E++ +RP+ L E+ GQ + +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRLVSASSVNEEESLDRAIRPKLLAEYVGQPQVREQMEIFIKAAQLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY + DL+ IV R A GL +++E A EIA RSRGTPRIA RLLRRVRDFAEV Sbjct: 181 LEFYNVADLQHIVGRSAACLGLTLSEEGALEIARRSRGTPRIANRLLRRVRDFAEVRANG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 ++ E++ +AL L +D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 NMSGEVSASALDMLNVDSQGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 IEP++IQQGFIQRTPRGR+ A++H GI Sbjct: 301 IEPFLIQQGFIQRTPRGRMATQHAYRHFGI 330 >gi|307130889|ref|YP_003882905.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Dickeya dadantii 3937] gi|306528418|gb|ADM98348.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Dickeya dadantii 3937] Length = 334 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/318 (58%), Positives = 242/318 (76%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V+ E+ +RP+ L E+ GQ +++FIEAA+ R +ALDH+L GPPGLGKTTLA Sbjct: 13 VADEELQDRAIRPKLLSEYVGQPVVREQMEIFIEAARKRGDALDHLLIFGPPGLGKTTLA 72 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA E+GVN R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEE+LYPAMED Sbjct: 73 NIVANEMGVNLRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY++ DL+ I Sbjct: 133 YQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHI 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V+R A+ GL +TD+ A E+A RSRGTPRIA RLLRRVRDF+EV I+ +A AL Sbjct: 193 VKRSAQCLGLDMTDDGALEVARRSRGTPRIANRLLRRVRDFSEVKSDGAISATVAIQALD 252 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 LA+D GFD +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+Q Sbjct: 253 MLAVDSEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQ 312 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTPRGR+ A++H G+ Sbjct: 313 RTPRGRIATQHAYRHFGL 330 >gi|187479253|ref|YP_787278.1| Holliday junction DNA helicase RuvB [Bordetella avium 197N] gi|97189925|sp|Q2KVY2|RUVB_BORA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|115423840|emb|CAJ50391.1| holliday junction DNA helicase [Bordetella avium 197N] Length = 357 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/311 (59%), Positives = 231/311 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ A L++FI AA+ R+EALDHVL GPPGLGKTTLA ++A E+GV Sbjct: 34 LRPKALQEYVGQQRAREQLEIFIAAARKRSEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG Sbjct: 94 MRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY +DL IV R A L Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDDLAHIVTRSAGLLNA 213 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T E A E+A R+RGTPRIA RLLRRVRD+AEV I E A+ AL L +D G D Sbjct: 214 DITPEGAREVARRARGTPRIANRLLRRVRDYAEVKAGGRIDTEAANQALAMLEVDPQGLD 273 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR+ Sbjct: 274 LMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRMATQ 333 Query: 322 IAWQHLGIDIP 332 W+HLG+ P Sbjct: 334 TTWRHLGLQPP 344 >gi|121595985|ref|YP_987881.1| Holliday junction DNA helicase RuvB [Acidovorax sp. JS42] gi|171769522|sp|A1WC30|RUVB_ACISJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|120608065|gb|ABM43805.1| Holliday junction DNA helicase RuvB [Acidovorax sp. JS42] Length = 356 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/320 (59%), Positives = 238/320 (74%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+A LRP+ L+E+ GQ +A L++FI AAK R EALDHVL GPPGLGKTTL+ Sbjct: 27 SQEEALERALRPKLLQEYVGQAKAREQLEIFIGAAKKRGEALDHVLLFGPPGLGKTTLSH 86 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 87 IIATELGVNLRQTSGPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDY 146 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L IV Sbjct: 147 QIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPDELARIV 206 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L G + E EIA RSRGTPRIA RLLRRVRD+AEV + IT +IA+ AL Sbjct: 207 MRSAGLLGAPIDAEGGMEIARRSRGTPRIANRLLRRVRDYAEVKGSGHITLDIANRALTM 266 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D GFD +D + L + F GGPVG++ I+A + E IED+IEPY+IQQG++QR Sbjct: 267 LDVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGYLQR 326 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ A++HLG+ P Sbjct: 327 TPRGRVATLAAYRHLGVAPP 346 >gi|21232453|ref|NP_638370.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|24212374|sp|Q8P6E7|RUVB_XANCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|21114235|gb|AAM42294.1| holliday junction binding protein, DNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 346 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 192/332 (57%), Positives = 247/332 (74%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ + S +++A + +RP+ L ++ GQ ++++I+AAKAR EA+DHVL Sbjct: 1 MTEQRTIASSATREDEAADASIRPKRLADYLGQQPVRDQMEIYIQAAKARGEAMDHVLIF 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS + Sbjct: 61 GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY ++L IV R A + G+ T + A EIA R+RGTPRIA RLLRRVRDFA+V A Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPDGAAEIARRARGTPRIANRLLRRVRDFAQVKAAGH 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +A AA+ L +D GFD+LD R L I +F GGPVG+E+++A LSE R +ED+I Sbjct: 241 IDLTVAQAAMQMLKVDPEGFDELDRRMLRTIVDHFDGGPVGVESLAASLSEERGTLEDVI 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQQGF+ RT RGR++ P A+ HLG+ P Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPP 332 >gi|251793065|ref|YP_003007791.1| Holliday junction DNA helicase RuvB [Aggregatibacter aphrophilus NJ8700] gi|247534458|gb|ACS97704.1| holliday junction DNA helicase RuvB [Aggregatibacter aphrophilus NJ8700] Length = 334 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/316 (59%), Positives = 236/316 (74%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ + C +++FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 16 EDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QL Sbjct: 76 ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY + DL +IV R Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + AA EIA RSRGTPRIA RLLRRVRD+A+V + IT IA AAL L Sbjct: 196 SAVCLQLKIDVAAAYEIARRSRGTPRIANRLLRRVRDYADVRNNGMITEAIAKAALAMLD 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 ID GFD LD + L + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP Sbjct: 256 IDDAGFDYLDRKLLMAVLERFDGGPVGLDNLAAAIGEERDTIEDVVEPYLIQQGFLQRTP 315 Query: 315 RGRLLMPIAWQHLGID 330 RGR+ ++H G++ Sbjct: 316 RGRIATLTTYRHFGVE 331 >gi|257465002|ref|ZP_05629373.1| Holliday junction DNA helicase RuvB [Actinobacillus minor 202] gi|257450662|gb|EEV24705.1| Holliday junction DNA helicase RuvB [Actinobacillus minor 202] Length = 332 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/306 (60%), Positives = 235/306 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ C +++FI+AAK R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKLLADYVGQPSVCQQMEIFIQAAKLRNEALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QLD+M+GEG Sbjct: 83 IRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY ++DL +IVQR A L Sbjct: 143 PAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYGVDDLTSIVQRSANCLNL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +++ A EIA RSRGTPRIA RLLRRVRD+A+V + I+ EIA AL L +D GFD Sbjct: 203 NLSESGAHEIARRSRGTPRIANRLLRRVRDYADVRNNGIISSEIAKQALSMLDVDAEGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D++ L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR+ Sbjct: 263 FMDIKLLEAIVDRFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATQ 322 Query: 322 IAWQHL 327 ++HL Sbjct: 323 RTYEHL 328 >gi|240949539|ref|ZP_04753879.1| Holliday junction DNA helicase RuvB [Actinobacillus minor NM305] gi|240296112|gb|EER46773.1| Holliday junction DNA helicase RuvB [Actinobacillus minor NM305] Length = 332 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/306 (60%), Positives = 235/306 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ C +++FI+AAK R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKLLADYVGQPSVCQQMEIFIQAAKLRNEALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QLD+M+GEG Sbjct: 83 IRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY ++DL +IVQR A L Sbjct: 143 PAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYGVDDLTSIVQRSANCLNL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +++ A EIA RSRGTPRIA RLLRRVRD+A+V + I+ EIA AL L +D GFD Sbjct: 203 NLSESGAHEIARRSRGTPRIANRLLRRVRDYADVRNNGIISSEIAKQALSMLDVDAEGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D++ L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR+ Sbjct: 263 FMDIKLLEAIVERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATQ 322 Query: 322 IAWQHL 327 ++HL Sbjct: 323 RTYEHL 328 >gi|78065250|ref|YP_368019.1| Holliday junction DNA helicase B [Burkholderia sp. 383] gi|97189947|sp|Q39JJ1|RUVB_BURS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|77965995|gb|ABB07375.1| Holliday junction DNA helicase RuvB [Burkholderia sp. 383] Length = 356 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/320 (60%), Positives = 241/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+ LRPR L+++ GQ + L++FIEAAK R+E LDHVL GPPGLGKTTLA Sbjct: 21 SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 80 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 81 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ E L IV Sbjct: 141 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 200 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRDFAEV IT +ADAAL Sbjct: 201 RRSASLLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 260 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 261 LDVDPVGFDLMDRKLLEAILYKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 320 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ +P Sbjct: 321 TPRGRVATLLTYRHFGLSVP 340 >gi|188990570|ref|YP_001902580.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv. campestris str. B100] gi|229484901|sp|B0RPY7|RUVB_XANCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|167732330|emb|CAP50522.1| Holliday junction binding protein DNA helicase [Xanthomonas campestris pv. campestris] Length = 346 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/332 (57%), Positives = 247/332 (74%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ + S +++A + +RP+ L ++ GQ ++++I+AAKAR EA+DHVL Sbjct: 1 MTEQRTIASSATREDEAADASIRPKRLADYLGQQPVRDQMEIYIQAAKARGEAMDHVLIF 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS + Sbjct: 61 GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY ++L IV R A + G+ T + A EIA R+RGTPRIA RLLRRVRDFA+V A Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPDGAAEIARRARGTPRIANRLLRRVRDFAQVKAAGH 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +A AA+ L +D GFD+LD R L I +F GGPVG+E+++A LSE R +ED+I Sbjct: 241 IDLAVAQAAMQMLKVDPEGFDELDRRMLRTIVDHFDGGPVGVESLAASLSEERGTLEDVI 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQQGF+ RT RGR++ P A+ HLG+ P Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPP 332 >gi|294635835|ref|ZP_06714290.1| holliday junction DNA helicase RuvB [Edwardsiella tarda ATCC 23685] gi|291090807|gb|EFE23368.1| holliday junction DNA helicase RuvB [Edwardsiella tarda ATCC 23685] Length = 334 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/309 (60%), Positives = 239/309 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L ++ GQ + +++FI+AAK R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKSLADYVGQPQVREQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTL+ ATTR G LT+PL+DRFGI RL FY++ DL+ IV R A+ GL Sbjct: 143 PAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVGRSAQCLGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++T+E A EIA RSRGTPRIA RLLRRVRDFAEV I +A AL L +D GFD Sbjct: 203 SLTEEGALEIARRSRGTPRIANRLLRRVRDFAEVCADGHIDGTVAAQALNMLDVDAAGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGFIQRTPRGR+ Sbjct: 263 YMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFIQRTPRGRIATG 322 Query: 322 IAWQHLGID 330 A++H GI+ Sbjct: 323 HAYRHFGIE 331 >gi|119472453|ref|ZP_01614552.1| Holliday junction helicase, subunit B [Alteromonadales bacterium TW-7] gi|119444890|gb|EAW26189.1| Holliday junction helicase, subunit B [Alteromonadales bacterium TW-7] Length = 335 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/317 (58%), Positives = 238/317 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + ED+ +RP+ L ++ GQ +++FIEAA++R EALDH+L GPPGLGKTTLA Sbjct: 14 TNEDSIDRAIRPKLLADYRGQPHVKQQMEIFIEAARSRDEALDHLLIFGPPGLGKTTLAN 73 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VA EL VN ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS VEEILYPAMED+ Sbjct: 74 IVANELNVNIKTTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSPQVEEILYPAMEDY 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY +EDL IV Sbjct: 134 QLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLSHIV 193 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L + D+ A EIA RSRGTPRIA RLLRRVRD+ +V T+ ++A AL Sbjct: 194 GRSAHYLELEMCDDGASEIAKRSRGTPRIANRLLRRVRDYTQVKSDGTVNADVAQQALDM 253 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 + +DK GFD +D +YL I F GGPVG++ ++A + E R+ IED+IEP++IQQGFIQR Sbjct: 254 IDVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGFIQR 313 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR++ A+ H G+ Sbjct: 314 TPRGRIVSDNAYHHFGL 330 >gi|307826390|ref|ZP_07656592.1| Holliday junction DNA helicase RuvB [Methylobacter tundripaludum SV96] gi|307732567|gb|EFO03442.1| Holliday junction DNA helicase RuvB [Methylobacter tundripaludum SV96] Length = 344 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 191/322 (59%), Positives = 240/322 (74%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+ +RP+ L ++ GQ E +++FI+AA AR EALDHVL GPPGLGKTTLA Sbjct: 14 SDEERQDRAIRPKRLADYIGQKELREQMEIFIQAATARQEALDHVLIFGPPGLGKTTLAN 73 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+ V R TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS VEEILYPAMED+ Sbjct: 74 IIAAEMCVKIRQTSGPVLDKAGDLAALLTNLEPHDVLFIDEIHRLSPAVEEILYPAMEDY 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLDLM+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY +++L IV Sbjct: 134 QLDLMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYTVDELANIV 193 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R AK+ G+A+ A EIA RSRGTPRIA RLLRRVRD+AEV TIT E++ AL Sbjct: 194 ARSAKVLGIAMEPRGAYEIARRSRGTPRIANRLLRRVRDYAEVKGNGTITEELSFQALEM 253 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D GFD LD + L + +F GGPVG++T++A +SE R IED++EPY++QQGFI R Sbjct: 254 LKVDNNGFDSLDRKLLLAMIESFAGGPVGLDTLAAAISEERGTIEDVVEPYLLQQGFIMR 313 Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334 TPRGR++ A+ H G+ P + Sbjct: 314 TPRGRVVTQNAYLHFGLQPPKQ 335 >gi|117923787|ref|YP_864404.1| Holliday junction DNA helicase RuvB [Magnetococcus sp. MC-1] gi|171460774|sp|A0L4V5|RUVB_MAGSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|117607543|gb|ABK42998.1| Holliday junction DNA helicase subunit RuvB [Magnetococcus sp. MC-1] Length = 343 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 191/311 (61%), Positives = 236/311 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+EF GQ +NL VF+ AAK RAEA+DH+L GPPGLGKTT+AQ++A E+GV Sbjct: 24 LRPKYLKEFVGQKPLKANLTVFLHAAKQRAEAIDHILLHGPPGLGKTTMAQIIAWEMGVG 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 RSTSGPVI KAGDLAALLTNL DVLF+DEIHRLS VEEILYPAMEDFQLDLM+GEG Sbjct: 84 LRSTSGPVIDKAGDLAALLTNLNPGDVLFVDEIHRLSPAVEEILYPAMEDFQLDLMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSVKI+L RFTL+ ATTR G+LT+PL+DRFGI R+ FYE ++L+ IV R A + G+ Sbjct: 144 PSARSVKIDLPRFTLVGATTRAGMLTSPLRDRFGILARMQFYEPDELQQIVTRSASIMGI 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ + A EIA RSRGTPRIA RLLRRVRDFA+VA I +++AD ALL L +D+ G D Sbjct: 204 DISADGAFEIARRSRGTPRIANRLLRRVRDFAQVAGPGYIDKDLADRALLALEVDRNGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L + F GGPVG++T++A + E R IED+IEPY+I QG + RTPRGR Sbjct: 264 NMDHRLLKALLDKFAGGPVGLDTLAAAIGEERSTIEDVIEPYLILQGMLDRTPRGRKATH 323 Query: 322 IAWQHLGIDIP 332 ++ +G P Sbjct: 324 ASYTAMGRTAP 334 >gi|301384819|ref|ZP_07233237.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. tomato Max13] gi|302063527|ref|ZP_07255068.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. tomato K40] gi|302130609|ref|ZP_07256599.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|44888474|sp|Q87Y35|RUVB_PSESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB Length = 353 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/337 (57%), Positives = 250/337 (74%), Gaps = 4/337 (1%) Query: 1 MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M+D + L++ V D D L +RP +L ++ GQ +++FI+AA+ R+EALDH Sbjct: 1 MIDADRLIT-AVGGRDRDEQLDRAIRPLSLADYIGQPTVREQMELFIQAARGRSEALDHT 59 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE DVLFIDEIHRL Sbjct: 60 LIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRL 119 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI Sbjct: 120 SPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIV 179 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL FY I DL TIV R A + GL + A EIA R+RGTPRIA RLLRRVRDFA+V Sbjct: 180 QRLEFYNIADLSTIVARSAGILGLVIEPAGAFEIARRARGTPRIANRLLRRVRDFAQVRG 239 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 ITR+ AD AL L +D+ GFD D R L + F GGPVG+++++A +SE R IE Sbjct: 240 NGQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIE 299 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 D++EPY+IQQG+I RTPRGR++ A+ H G++IP R Sbjct: 300 DVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPTR 336 >gi|91789932|ref|YP_550884.1| Holliday junction DNA helicase RuvB [Polaromonas sp. JS666] gi|122967369|sp|Q124Q6|RUVB_POLSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|91699157|gb|ABE45986.1| Holliday junction DNA helicase RuvB [Polaromonas sp. JS666] Length = 354 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/319 (58%), Positives = 237/319 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ +E+ GQ + L++FI AAK R+EALDHVL GPPGLGKTTL+ + Sbjct: 28 HEEAIERALRPKLFDEYVGQAKVREQLEIFIGAAKKRSEALDHVLLFGPPGLGKTTLSHI 87 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 88 IAHELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQ 147 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV+ Sbjct: 148 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELGRIVR 207 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + +E EIA RSRGTPRIA RLLRRVRD+A+V IT +IA+ AL L Sbjct: 208 RSASLLNAPMDEEGGFEIARRSRGTPRIANRLLRRVRDYADVKGTGQITLDIANKALAML 267 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L + F GGPVG++ I+A + E RD IED+IEPY+IQQG++QRT Sbjct: 268 DVDPQGFDVMDRKLLEAVIHRFDGGPVGLDNIAASIGEERDTIEDVIEPYLIQQGYLQRT 327 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A++HLG+ P Sbjct: 328 PRGRIATLAAYRHLGVAPP 346 >gi|15641847|ref|NP_231479.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591339|ref|ZP_01678627.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 2740-80] gi|153803758|ref|ZP_01958344.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MZO-3] gi|153824053|ref|ZP_01976720.1| Holliday junction DNA helicase RuvB [Vibrio cholerae B33] gi|227081974|ref|YP_002810525.1| Holliday junction DNA helicase RuvB [Vibrio cholerae M66-2] gi|229508058|ref|ZP_04397563.1| holliday junction DNA helicase RuvB [Vibrio cholerae BX 330286] gi|229511703|ref|ZP_04401182.1| holliday junction DNA helicase RuvB [Vibrio cholerae B33] gi|229515225|ref|ZP_04404685.1| holliday junction DNA helicase RuvB [Vibrio cholerae TMA 21] gi|229518842|ref|ZP_04408285.1| holliday junction DNA helicase RuvB [Vibrio cholerae RC9] gi|229520305|ref|ZP_04409731.1| holliday junction DNA helicase RuvB [Vibrio cholerae TM 11079-80] gi|229523863|ref|ZP_04413268.1| holliday junction DNA helicase RuvB [Vibrio cholerae bv. albensis VL426] gi|229529132|ref|ZP_04418522.1| holliday junction DNA helicase RuvB [Vibrio cholerae 12129(1)] gi|229607619|ref|YP_002878267.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MJ-1236] gi|254292160|ref|ZP_04962931.1| Holliday junction DNA helicase RuvB [Vibrio cholerae AM-19226] gi|254848931|ref|ZP_05238281.1| holliday junction ATP-dependent DNA helicase ruvB [Vibrio cholerae MO10] gi|255745395|ref|ZP_05419344.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101] gi|298498116|ref|ZP_07007923.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MAK 757] gi|20140290|sp|Q9KR02|RUVB_VIBCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767449|sp|C3LNE8|RUVB_VIBCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|9656373|gb|AAF94993.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546803|gb|EAX56969.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 2740-80] gi|124120706|gb|EAY39449.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MZO-3] gi|126518425|gb|EAZ75648.1| Holliday junction DNA helicase RuvB [Vibrio cholerae B33] gi|150421923|gb|EDN13899.1| Holliday junction DNA helicase RuvB [Vibrio cholerae AM-19226] gi|227009862|gb|ACP06074.1| Holliday junction DNA helicase RuvB [Vibrio cholerae M66-2] gi|229332906|gb|EEN98392.1| holliday junction DNA helicase RuvB [Vibrio cholerae 12129(1)] gi|229337444|gb|EEO02461.1| holliday junction DNA helicase RuvB [Vibrio cholerae bv. albensis VL426] gi|229342671|gb|EEO07663.1| holliday junction DNA helicase RuvB [Vibrio cholerae TM 11079-80] gi|229343531|gb|EEO08506.1| holliday junction DNA helicase RuvB [Vibrio cholerae RC9] gi|229347930|gb|EEO12889.1| holliday junction DNA helicase RuvB [Vibrio cholerae TMA 21] gi|229351668|gb|EEO16609.1| holliday junction DNA helicase RuvB [Vibrio cholerae B33] gi|229355563|gb|EEO20484.1| holliday junction DNA helicase RuvB [Vibrio cholerae BX 330286] gi|229370274|gb|ACQ60697.1| holliday junction DNA helicase RuvB [Vibrio cholerae MJ-1236] gi|254844636|gb|EET23050.1| holliday junction ATP-dependent DNA helicase ruvB [Vibrio cholerae MO10] gi|255737225|gb|EET92621.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101] gi|297542449|gb|EFH78499.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MAK 757] Length = 334 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/323 (57%), Positives = 242/323 (74%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 +S + E+ +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGK Sbjct: 11 ISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGK 70 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYP Sbjct: 71 TTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYP 130 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y++ D Sbjct: 131 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVAD 190 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L+ IVQR A+ GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I + AD Sbjct: 191 LQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTAD 250 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D GFD +D + L I F GGPVGI+ ++A + E +D IED++EP++IQQ Sbjct: 251 RALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQ 310 Query: 308 GFIQRTPRGRLLMPIAWQHLGID 330 G++QRTPRGR+ A+ H GI+ Sbjct: 311 GYLQRTPRGRIATDRAYLHFGIE 333 >gi|260222295|emb|CBA31716.1| Holliday junction ATP-dependent DNA helicase ruvB [Curvibacter putative symbiont of Hydra magnipapillata] Length = 355 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/320 (59%), Positives = 239/320 (74%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + E+A LRP+ L+E+ GQ + L++FI AAK R EALDHVL GPPGLGKTTL+ Sbjct: 26 NSEEAIERALRPKLLDEYVGQAKVREQLEIFIGAAKKRDEALDHVLLFGPPGLGKTTLSH 85 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 86 IIAHELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSAVVEEILYPALEDY 145 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 ++D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 146 KIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTNEELARIV 205 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L G+ + + EIA RSRGTPRIA RLLRRVRDFAEV IT +IA+ AL Sbjct: 206 KRSAGLLGVPMDENGGFEIARRSRGTPRIANRLLRRVRDFAEVKGDGKITLDIANRALAM 265 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D GFD +D + L + F GGPVG++ I+A + E R+ IED+IEPY+IQQG++QR Sbjct: 266 LDVDPQGFDLMDRKLLEAVIHRFDGGPVGLDNIAASIGEERETIEDVIEPYLIQQGYLQR 325 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ A++HLG+ P Sbjct: 326 TPRGRIATLAAYRHLGVTAP 345 >gi|262276111|ref|ZP_06053920.1| holliday junction DNA helicase RuvB [Grimontia hollisae CIP 101886] gi|262219919|gb|EEY71235.1| holliday junction DNA helicase RuvB [Grimontia hollisae CIP 101886] Length = 335 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 190/322 (59%), Positives = 237/322 (73%), Gaps = 1/322 (0%) Query: 13 SQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 S+ED I +RP+ L ++ GQ +++FI AA+ R EALDH+L GPPGLGKTTLA Sbjct: 14 SREDDIIDRAIRPKMLADYQGQDHVRDQMEIFIHAARKRKEALDHLLIFGPPGLGKTTLA 73 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA E+ VN R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEE+LYPAMED Sbjct: 74 NIVANEMDVNIRTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEVLYPAMED 133 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +QLD+M+GEGP+ARS+KI+L FTL+ ATTR G LT+PL+DRFGI RL +Y I DLK I Sbjct: 134 YQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGITQRLEYYNIADLKGI 193 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 VQR A L + +E A EIA R+RGTPRIA RLLRRVRD+AEV I +IA AL Sbjct: 194 VQRSANYLNLEIDEEGAYEIARRARGTPRIANRLLRRVRDYAEVKADGKIDADIASKALD 253 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L +D GFD +D + LT I F GGPVG++ ++A + E +D IED++EPY+IQQG++Q Sbjct: 254 MLDVDNQGFDYMDRKLLTAIIEKFDGGPVGLDNLAAAIGEAKDTIEDVLEPYLIQQGYLQ 313 Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333 RTPRGR+ A+ H G D P Sbjct: 314 RTPRGRIASQRAYLHFGFDRPE 335 >gi|153217382|ref|ZP_01951133.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 1587] gi|153830580|ref|ZP_01983247.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 623-39] gi|124113600|gb|EAY32420.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 1587] gi|148873942|gb|EDL72077.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 623-39] gi|327484397|gb|AEA78804.1| Holliday junction DNA helicase RuvB [Vibrio cholerae LMA3894-4] Length = 334 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/322 (57%), Positives = 241/322 (74%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S + E+ +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKT Sbjct: 12 SNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKT 71 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPA Sbjct: 72 TLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPA 131 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y++ DL Sbjct: 132 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVADL 191 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + IVQR A+ GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I + AD Sbjct: 192 QHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTADR 251 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L +D GFD +D + L I F GGPVGI+ ++A + E +D IED++EP++IQQG Sbjct: 252 ALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQG 311 Query: 309 FIQRTPRGRLLMPIAWQHLGID 330 ++QRTPRGR+ A+ H GI+ Sbjct: 312 YLQRTPRGRIATDRAYLHFGIE 333 >gi|332993888|gb|AEF03943.1| Holliday junction DNA helicase RuvB [Alteromonas sp. SN2] Length = 334 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/330 (56%), Positives = 247/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L++ + S ED I +RP+ L+++TGQ C +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRLITPDASTEDEVIDRAIRPKMLDDYTGQPHVCEQMEIFIQAARKRDDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+ V+ ++TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMDVSIKTTSGPVLEKAGDLAALLTNLERNDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL TIV R A L ++ E A EIA RSRGTPRIA RLLRRVRD+AE+ Sbjct: 181 LEFYSVKDLTTIVARSASYLNLDMSSEGAQEIARRSRGTPRIANRLLRRVRDYAEIKSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 T+ E A AL L +DK GFD +D + L I F GGPVG++ ++A + E ++ IED+ Sbjct: 241 TVGVETAAKALDMLDVDKEGFDYMDRKLLCAIIEKFDGGPVGLDNLAAAIGEEKETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 IEP++IQQGF+QRTPRGR++ A+ H G Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGF 330 >gi|22126138|ref|NP_669561.1| Holliday junction DNA helicase RuvB [Yersinia pestis KIM 10] gi|45441703|ref|NP_993242.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Microtus str. 91001] gi|51596367|ref|YP_070558.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis IP 32953] gi|108807437|ref|YP_651353.1| Holliday junction DNA helicase RuvB [Yersinia pestis Antiqua] gi|108811698|ref|YP_647465.1| Holliday junction DNA helicase RuvB [Yersinia pestis Nepal516] gi|145598359|ref|YP_001162435.1| Holliday junction DNA helicase RuvB [Yersinia pestis Pestoides F] gi|149366013|ref|ZP_01888048.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125] gi|153948000|ref|YP_001401003.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis IP 31758] gi|165928350|ref|ZP_02224182.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Orientalis str. F1991016] gi|165938878|ref|ZP_02227432.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Orientalis str. IP275] gi|166009231|ref|ZP_02230129.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua str. E1979001] gi|166210761|ref|ZP_02236796.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua str. B42003004] gi|167401423|ref|ZP_02306920.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419932|ref|ZP_02311685.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424488|ref|ZP_02316241.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024377|ref|YP_001720882.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis YPIII] gi|186895408|ref|YP_001872520.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis PB1/+] gi|218929165|ref|YP_002347040.1| Holliday junction DNA helicase RuvB [Yersinia pestis CO92] gi|229894772|ref|ZP_04509952.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Yersinia pestis Pestoides A] gi|229897475|ref|ZP_04512631.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898121|ref|ZP_04513270.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Yersinia pestis biovar Orientalis str. India 195] gi|229901980|ref|ZP_04517101.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Yersinia pestis Nepal516] gi|270490836|ref|ZP_06207910.1| Holliday junction DNA helicase RuvB [Yersinia pestis KIM D27] gi|294503876|ref|YP_003567938.1| Holliday junction DNA helicase RuvB [Yersinia pestis Z176003] gi|20140070|sp|Q8ZEU5|RUVB_YERPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|68715422|sp|Q66AT9|RUVB_YERPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|123072836|sp|Q1C814|RUVB_YERPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|123373278|sp|Q1CJG5|RUVB_YERPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231571|sp|A4TJK0|RUVB_YERPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|167012673|sp|A7FIC5|RUVB_YERP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238688451|sp|B1JLL0|RUVB_YERPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238691371|sp|B2K324|RUVB_YERPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|21959099|gb|AAM85812.1|AE013828_3 Holliday junction helicase subunit A [Yersinia pestis KIM 10] gi|45436565|gb|AAS62119.1| Holliday junction DNA helicase [Yersinia pestis biovar Microtus str. 91001] gi|51589649|emb|CAH21279.1| Holliday junction DNA helicase [Yersinia pseudotuberculosis IP 32953] gi|108775346|gb|ABG17865.1| Holliday junction DNA helicase subunit RuvB [Yersinia pestis Nepal516] gi|108779350|gb|ABG13408.1| Holliday junction DNA helicase subunit RuvB [Yersinia pestis Antiqua] gi|115347776|emb|CAL20693.1| Holliday junction DNA helicase [Yersinia pestis CO92] gi|145210055|gb|ABP39462.1| Holliday junction DNA helicase subunit RuvB [Yersinia pestis Pestoides F] gi|149292426|gb|EDM42500.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125] gi|152959495|gb|ABS46956.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis IP 31758] gi|165913241|gb|EDR31864.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Orientalis str. IP275] gi|165919633|gb|EDR36966.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Orientalis str. F1991016] gi|165991786|gb|EDR44087.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua str. E1979001] gi|166207941|gb|EDR52421.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua str. B42003004] gi|166961627|gb|EDR57648.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049119|gb|EDR60527.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056370|gb|EDR66139.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750911|gb|ACA68429.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis YPIII] gi|186698434|gb|ACC89063.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis PB1/+] gi|229680876|gb|EEO76971.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Yersinia pestis Nepal516] gi|229688837|gb|EEO80904.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Yersinia pestis biovar Orientalis str. India 195] gi|229693812|gb|EEO83861.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Yersinia pestis biovar Orientalis str. PEXU2] gi|229702245|gb|EEO90264.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Yersinia pestis Pestoides A] gi|262362005|gb|ACY58726.1| Holliday junction DNA helicase RuvB [Yersinia pestis D106004] gi|262365858|gb|ACY62415.1| Holliday junction DNA helicase RuvB [Yersinia pestis D182038] gi|270339340|gb|EFA50117.1| Holliday junction DNA helicase RuvB [Yersinia pestis KIM D27] gi|294354335|gb|ADE64676.1| Holliday junction DNA helicase RuvB [Yersinia pestis Z176003] gi|320015264|gb|ADV98835.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 334 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/330 (58%), Positives = 245/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V ++ I +RP+ L E+ GQ +++FI+AAK R +ALDHVL Sbjct: 1 MIEADRLISAAVINDEESIDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R AK GL +T E A ++A RSRGTPRI RLLRRVRDFAEV Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I E+A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AINGEVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGFIQRTPRGR+ A++H GI Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330 >gi|229592300|ref|YP_002874419.1| Holliday junction DNA helicase RuvB [Pseudomonas fluorescens SBW25] gi|259495674|sp|C3JYS7|RUVB_PSEFS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|229364166|emb|CAY51819.1| holliday junction DNA helicase [Pseudomonas fluorescens SBW25] Length = 352 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/313 (59%), Positives = 239/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R+E+LDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 24 IRPLSLADYIGQPTVREQMELFIQAARGRSESLDHTLIFGPPGLGKTTLANIIAQEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAALLTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSTADLATIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A EIA R+RGTPRIA RLLRRVRDFAEV IT+ +AD AL L +D+ GFD Sbjct: 204 PLDPEGAFEIARRARGTPRIANRLLRRVRDFAEVRAKGHITKAVADLALNLLDVDEHGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPSR 336 >gi|53804470|ref|YP_113687.1| Holliday junction DNA helicase RuvB [Methylococcus capsulatus str. Bath] gi|68715360|sp|Q609L0|RUVB_METCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|53758231|gb|AAU92522.1| Holliday junction DNA helicase RuvB [Methylococcus capsulatus str. Bath] Length = 345 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 191/320 (59%), Positives = 236/320 (73%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E+A +RP+ LE++ GQ + +FI+AA R EALDHVL GPPGLGKTTLA ++ Sbjct: 15 EEAIDRAIRPKRLEDYVGQRAMREQMAIFIQAALGRGEALDHVLIFGPPGLGKTTLANII 74 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A ELGVN R TSGPV+ KAGDLAALLTNLE RDVLFIDEIHRL +VEE+LYPAMED+Q+ Sbjct: 75 ANELGVNVRHTSGPVLEKAGDLAALLTNLEPRDVLFIDEIHRLGAVVEEVLYPAMEDYQI 134 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY +E+L IV R Sbjct: 135 DIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVHRLEFYSVEELSRIVAR 194 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A++ G +T E A E+A RSRGTPRIA RLLRRVRDFA+V IT E+A AL L Sbjct: 195 SARILGSEITPEGAAEVARRSRGTPRIANRLLRRVRDFAQVMADGRITGEVAGKALEMLD 254 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFDQ D R L + F GGPVG++ ++A + E R IED++EPY+IQQGFI RTP Sbjct: 255 VDPNGFDQSDRRLLLTMMEKFEGGPVGLDNLAAAIGEERGTIEDVLEPYLIQQGFIMRTP 314 Query: 315 RGRLLMPIAWQHLGIDIPHR 334 RGR+ A+ H G+ P R Sbjct: 315 RGRVATRNAYLHFGLKPPQR 334 >gi|238751591|ref|ZP_04613081.1| Holliday junction DNA helicase RuvB [Yersinia rohdei ATCC 43380] gi|238710153|gb|EEQ02381.1| Holliday junction DNA helicase RuvB [Yersinia rohdei ATCC 43380] Length = 334 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/330 (58%), Positives = 246/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V S E++ +RP+ L E+ GQ +++FI+AAK R +ALDHVL Sbjct: 1 MIEADRLISAGVISDEESIDRAIRPKMLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R AK GL +T E A ++A RSRGTPRI RLLRRVRDFAEV Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I ++A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGFIQRTPRGR+ A++H GI Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330 >gi|282164972|ref|YP_003357357.1| Holliday junction ATP-dependent DNA helicase RuvB [Methanocella paludicola SANAE] gi|282157286|dbj|BAI62374.1| Holliday junction ATP-dependent DNA helicase RuvB [Methanocella paludicola SANAE] Length = 344 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/306 (58%), Positives = 238/306 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L+EF GQ + NLKVFIEAA+ R E LDHVL GPPGLGKTTLA ++ARE+G N Sbjct: 33 LRPKSLDEFIGQRKIKENLKVFIEAARKRNEPLDHVLLYGPPGLGKTTLAHIIAREMGAN 92 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I + GDLAA+LTN+++ DV+FIDEIHRLS +VEE++YPAMED+++D+++G+G Sbjct: 93 IRITSGPAIERPGDLAAILTNIKEGDVIFIDEIHRLSHVVEEVMYPAMEDYEIDIIIGKG 152 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS+++ L +FTL+ ATTR GLLT+PL+DRFG+ +R +FYE DLKTI+ R A + G+ Sbjct: 153 PSARSIRLELPKFTLVGATTRAGLLTSPLRDRFGMSMRFDFYEPRDLKTIIDRSASILGV 212 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++++ + EIA RSRGTPRIA RLLRRVRDFA V + K I REI + +L RL +D +G D Sbjct: 213 ELSEDGSMEIAKRSRGTPRIANRLLRRVRDFASVGNKKVIDREIVNDSLNRLDVDYLGLD 272 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L I ++F GGPVG ET++ +SE + IED+ EPY+IQ GFI RTPRGR+ Sbjct: 273 GMDRRILKKIVKDFDGGPVGAETLAVTVSEEVETIEDVYEPYLIQIGFINRTPRGRMSTK 332 Query: 322 IAWQHL 327 A +HL Sbjct: 333 AAVEHL 338 >gi|238756970|ref|ZP_04618158.1| Holliday junction DNA helicase RuvB [Yersinia aldovae ATCC 35236] gi|238704800|gb|EEP97329.1| Holliday junction DNA helicase RuvB [Yersinia aldovae ATCC 35236] Length = 334 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/330 (58%), Positives = 247/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S +V S E++ +RP+ L E+ GQ +++FI+AAK R +ALDHVL Sbjct: 1 MIEADRLISASVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R AK GL +T E A ++A RSRGTPRI RLLRRVRDFAEV Sbjct: 181 LEFYQVADLEHIVARSAKCLGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I ++A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGFIQRTPRGR+ A++H GI Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330 >gi|310643558|ref|YP_003948316.1| holliday junction ATP-dependent DNA helicase ruvb [Paenibacillus polymyxa SC2] gi|309248508|gb|ADO58075.1| Holliday junction ATP-dependent DNA helicase ruvB [Paenibacillus polymyxa SC2] Length = 335 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 195/333 (58%), Positives = 245/333 (73%), Gaps = 3/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++S N+ ED L LRPR L E+ GQ + NLKV+IEAAK R EALDHVL Sbjct: 1 MDDR--IISANLMMEDQTAELSLRPRYLNEYIGQNQVKENLKVYIEAAKMRKEALDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL Sbjct: 59 YGPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE++YPAMEDF LD+M+G+GPSARSV+++L FTLI ATTR GLL+ PL+DRFG+ R Sbjct: 119 TVEEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVISR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++L IV R A + + + +AA EIA+RSRGTPRIA RLL+RVRDFA+VA Sbjct: 179 LEFYTTDELAYIVSRNADIMEIEIVGDAAEEIALRSRGTPRIANRLLKRVRDFAQVAGDG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I E+A AL RL ID +G D++D + L + +F GGPVG++TI+A + E IED+ Sbjct: 239 IIHSELAAEALKRLQIDPLGLDEIDHKMLKAMIHSFRGGPVGLDTIAATIGEESQTIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q G +QRTPRGR + P A+ HLGI +P Sbjct: 299 YEPYLLQIGLLQRTPRGRTVTPAAYAHLGIPMP 331 >gi|238788519|ref|ZP_04632312.1| Holliday junction DNA helicase RuvB [Yersinia frederiksenii ATCC 33641] gi|238723432|gb|EEQ15079.1| Holliday junction DNA helicase RuvB [Yersinia frederiksenii ATCC 33641] Length = 334 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/330 (58%), Positives = 246/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V S E++ +RP+ L E+ GQ +++FI+AAK R +ALDHVL Sbjct: 1 MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R AK GL +T E A ++A RSRGTPRI RLLRRVRDFAEV Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I ++A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGFIQRTPRGR+ A++H GI Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330 >gi|297579364|ref|ZP_06941292.1| Holliday junction DNA helicase RuvB [Vibrio cholerae RC385] gi|297536958|gb|EFH75791.1| Holliday junction DNA helicase RuvB [Vibrio cholerae RC385] Length = 334 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/323 (57%), Positives = 241/323 (74%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 +S + E+ +RP+ L ++ GQ +++FI+AA R EALDH+L GPPGLGK Sbjct: 11 ISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAHMRQEALDHLLIFGPPGLGK 70 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYP Sbjct: 71 TTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYP 130 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y++ D Sbjct: 131 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVAD 190 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L+ IVQR A+ GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I + AD Sbjct: 191 LQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTAD 250 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D GFD +D + L I F GGPVGI+ ++A + E +D IED++EP++IQQ Sbjct: 251 RALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQ 310 Query: 308 GFIQRTPRGRLLMPIAWQHLGID 330 G++QRTPRGR+ A+ H GI+ Sbjct: 311 GYLQRTPRGRIATDRAYLHFGIE 333 >gi|120554624|ref|YP_958975.1| Holliday junction DNA helicase RuvB [Marinobacter aquaeolei VT8] gi|166231500|sp|A1U1B9|RUVB_MARAV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|120324473|gb|ABM18788.1| Holliday junction DNA helicase RuvB [Marinobacter aquaeolei VT8] Length = 343 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/335 (56%), Positives = 248/335 (74%), Gaps = 2/335 (0%) Query: 1 MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + E+ +RP L E+ GQ +++FI AA+ R EALDHVL Sbjct: 1 MIESDRLISAKAGEYEEVHDRAIRPTLLSEYVGQPTVREQMEIFISAARGRQEALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIANEMGVSIKTTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLSA 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI R Sbjct: 121 AVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY +DL I+ R A+L+ + + + A EIA RSRGTPRIA RLLRRVRDFAEV Sbjct: 181 LEFYNHQDLTHIITRSARLSSVEIDEAGAFEIARRSRGTPRIANRLLRRVRDFAEVRSNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT +IAD AL L +D GFD +D R L + F GGPVG+E+++A +SE R IED+ Sbjct: 241 HITADIADQALNMLKVDSQGFDHMDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 +EP++IQQG++ RTPRGR++ A+QH G+ +P R Sbjct: 301 LEPFLIQQGYMVRTPRGRMVTSNAYQHFGV-VPPR 334 >gi|123442634|ref|YP_001006611.1| Holliday junction DNA helicase RuvB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161519|ref|YP_004298096.1| Holliday junction DNA helicase RuvB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166231570|sp|A1JRJ5|RUVB_YERE8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|122089595|emb|CAL12444.1| Holliday junction DNA helicase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605501|emb|CBY26999.1| holliday junction DNA helicase RuvB [Yersinia enterocolitica subsp. palearctica Y11] gi|325665749|gb|ADZ42393.1| Holliday junction DNA helicase RuvB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860794|emb|CBX71081.1| holliday junction ATP-dependent DNA helicase ruvB [Yersinia enterocolitica W22703] Length = 334 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/330 (58%), Positives = 246/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V S E++ +RP+ L E+ GQ +++FI+AAK R +ALDHVL Sbjct: 1 MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R AK GL +T E A ++A RSRGTPRI RLLRRVRDFAEV Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I ++A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGFIQRTPRGR+ A++H GI Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330 >gi|153832507|ref|ZP_01985174.1| holliday junction DNA helicase RuvB [Vibrio harveyi HY01] gi|156973891|ref|YP_001444798.1| Holliday junction DNA helicase B [Vibrio harveyi ATCC BAA-1116] gi|166231569|sp|A7N1I0|RUVB_VIBHB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|148871302|gb|EDL70174.1| holliday junction DNA helicase RuvB [Vibrio harveyi HY01] gi|156525485|gb|ABU70571.1| hypothetical protein VIBHAR_01601 [Vibrio harveyi ATCC BAA-1116] Length = 334 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/317 (58%), Positives = 240/317 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +ED +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA + Sbjct: 17 EEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANI 76 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+Q Sbjct: 77 VANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQ 136 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+++DL+ IVQ Sbjct: 137 LDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVKDLQDIVQ 196 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A GL++ E A E+A R+RGTPRIA RLLRRVRD+AEV I + AD AL L Sbjct: 197 RSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADTADKALNML 256 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRT Sbjct: 257 DVDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRT 316 Query: 314 PRGRLLMPIAWQHLGID 330 PRGR+ A+ H GI+ Sbjct: 317 PRGRIATDRAYLHFGIE 333 >gi|325274575|ref|ZP_08140633.1| Holliday junction DNA helicase RuvB [Pseudomonas sp. TJI-51] gi|324100302|gb|EGB98090.1| Holliday junction DNA helicase RuvB [Pseudomonas sp. TJI-51] Length = 348 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/321 (57%), Positives = 240/321 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ +RP L E+ GQ + +FI+AA+ R+E+LDH L GPPGLGKTTLA + Sbjct: 15 REEVQDRAIRPLILSEYIGQPVVREQMSLFIQAARGRSESLDHTLIFGPPGLGKTTLANI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+GV+ +STSGP++ + GDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMEDFQ Sbjct: 75 IAHEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY +DL TIV Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSDKDLATIVS 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + GLA+ D A EIA R+RGTPRIA RLLRRVRD+AEV IT+ +AD AL L Sbjct: 195 RSANILGLAIEDLGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADMALNLL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D+ GFD D R L + F GGPVG++ ++A +SE R IED++EPY+IQQG+I RT Sbjct: 255 DVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDVLEPYLIQQGYIMRT 314 Query: 314 PRGRLLMPIAWQHLGIDIPHR 334 PRGR++ A+ H G++IP R Sbjct: 315 PRGRVVTRHAYLHFGLNIPGR 335 >gi|332653062|ref|ZP_08418807.1| holliday junction DNA helicase RuvB [Ruminococcaceae bacterium D16] gi|332518208|gb|EGJ47811.1| holliday junction DNA helicase RuvB [Ruminococcaceae bacterium D16] Length = 355 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/328 (56%), Positives = 247/328 (75%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E L++ ++++ED LRP+TL E+ GQ +A NL+VFI+AAK R E LDHVL GPPG Sbjct: 17 EPLVTTSLTREDEGEYSLRPKTLREYIGQEKAKGNLEVFIQAAKMRNEPLDHVLLHGPPG 76 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTL+ ++A E+GVN R TSGP I KAGDLAALLTNL + D+LF+DEIHRL+ VEE+ Sbjct: 77 LGKTTLSGIIANEMGVNVRITSGPAIEKAGDLAALLTNLNENDILFVDEIHRLNRSVEEV 136 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF +D+++G+GPSA S++++L +FTLI ATTR G L+ PL+DRFG+ +RL Y Sbjct: 137 LYPAMEDFAIDIIIGKGPSANSIRLDLPKFTLIGATTRAGQLSAPLRDRFGVTLRLELYT 196 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 E+L IV+R A + G+ + D+ A EIA RSRGTPRIA R+LRRVRDFA+V IT++ Sbjct: 197 PEELALIVKRSAGILGVPIEDDGAMEIARRSRGTPRIANRMLRRVRDFAQVRAGGVITKK 256 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +AD AL L ID +G D +D R L I N+ GGPVG+ET++A ++E +ED+ EPY+ Sbjct: 257 VADEALTALEIDHLGLDSIDHRMLRSIIENYRGGPVGLETLAATINEEAVTLEDVYEPYL 316 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +Q GF+ RTPRGR + P A+QHLG+ +P Sbjct: 317 MQLGFLTRTPRGRCVTPKAYQHLGLSVP 344 >gi|313901947|ref|ZP_07835364.1| Holliday junction DNA helicase subunit RuvB [Thermaerobacter subterraneus DSM 13965] gi|313467793|gb|EFR63290.1| Holliday junction DNA helicase subunit RuvB [Thermaerobacter subterraneus DSM 13965] Length = 380 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/333 (56%), Positives = 252/333 (75%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ E ++S + DA + LRP++L++F GQ L ++I+AA+ R +ALDHVL Sbjct: 1 MIEEERVVSSRLQAGDAPLEAGLRPQSLDDFPGQERVKEKLSIYIQAARERGDALDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKT+LAQV+ARELGV FR TSGP I +AGDLAALLTNL DRDVLFIDEIHRL Sbjct: 61 YGPPGLGKTSLAQVIARELGVGFRMTSGPAIERAGDLAALLTNLNDRDVLFIDEIHRLPR 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEILYPAMEDF LDL++G+GP+ARS++I+L RFTL+ ATTR G LT PL+DRFG+ +R Sbjct: 121 PVEEILYPAMEDFALDLIIGKGPAARSLRIDLPRFTLVGATTRAGRLTGPLRDRFGVLLR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y E+L IV R A + G+A+ E A E+A R+RGTPR+A RLLRR+RD+A+V Sbjct: 181 LEYYRPEELTRIVLRAAGILGVAIDPEGAAEVARRARGTPRVANRLLRRLRDYAQVRAEG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT E+A A L + +D +G D+ D R L ++A+++GGGPVG+ET++A + E + IED+ Sbjct: 241 VITAEVARAGLDLMEVDPLGLDRADRRLLAVMAQHYGGGPVGLETLAAAIGEEPETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q GF+QRTPRGR+L A++HLG+ +P Sbjct: 301 YEPYLMQMGFLQRTPRGRVLARRAYEHLGLPVP 333 >gi|121610986|ref|YP_998793.1| Holliday junction DNA helicase RuvB [Verminephrobacter eiseniae EF01-2] gi|166231567|sp|A1WQ68|RUVB_VEREI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|121555626|gb|ABM59775.1| Holliday junction DNA helicase RuvB [Verminephrobacter eiseniae EF01-2] Length = 354 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/316 (59%), Positives = 238/316 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QE A LRP+ L+E+ GQV+A L++FI AA+ R EALDHVL GPPGLGKTTL+ + Sbjct: 25 QEQAIERALRPKLLQEYVGQVKAREQLEIFIGAARQRGEALDHVLLFGPPGLGKTTLSHI 84 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGVN R TSGPV+ K DLAALLTNLE+RDVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 85 IAAELGVNLRQTSGPVLEKPKDLAALLTNLENRDVLFIDEIHRLSPVVEEILYPALEDYQ 144 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L IV+ Sbjct: 145 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYSAQELARIVK 204 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L G+ + D EIA RSRGTPRIA RLLRRVRD+ +V IT++IA+ AL L Sbjct: 205 RSAGLLGVPMDDAGGLEIARRSRGTPRIANRLLRRVRDYTQVKADGHITKDIAERALAML 264 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D G D +D + L + F GGPVG++ I+A + E IED+IEPY+IQQGF+QRT Sbjct: 265 DVDPEGLDVMDRKLLEAVIHRFDGGPVGLDNIAASIGEETGTIEDVIEPYLIQQGFLQRT 324 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR+ A++HLGI Sbjct: 325 PRGRIATQAAFRHLGI 340 >gi|313672962|ref|YP_004051073.1| holliday junction DNA helicase ruvb [Calditerrivibrio nitroreducens DSM 19672] gi|312939718|gb|ADR18910.1| Holliday junction DNA helicase RuvB [Calditerrivibrio nitroreducens DSM 19672] Length = 347 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/323 (56%), Positives = 243/323 (75%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 + S+ ED + +RP+ E+ GQ + NLK+F+EAAK R E LDH LF GPPGLG Sbjct: 5 IFSKEKLGEDVINNHIRPKRFSEYVGQKKIIENLKIFVEAAKLRNEPLDHTLFYGPPGLG 64 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA +++ E+ VN +STSGPVI K GDLAA+LTNL + DVLFIDEIHRL VEEILY Sbjct: 65 KTTLANIISNEMNVNIKSTSGPVIEKPGDLAAILTNLSEGDVLFIDEIHRLHSSVEEILY 124 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDFQLD+++G+GPSAR++KI+L +FTL+ ATTR+GLLT+PL+DRFG+ +L+FY E Sbjct: 125 PAMEDFQLDIVIGQGPSARTIKIDLPKFTLVGATTRIGLLTSPLRDRFGMVFKLDFYSEE 184 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L +I++RG+ + + + AA EIA RSRGTPRIA R+LRRVRDFA+V + I+ +IA Sbjct: 185 ELISIIKRGSTILNCTIDESAAVEIAKRSRGTPRIAHRILRRVRDFAQVMNNGYISIDIA 244 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 L RL ID+ G D+ D YL I + GGPVG++T+SA LSE RD +ED+ EPY+I Sbjct: 245 KLGLERLEIDEQGLDKADRAYLNTIIEKYDGGPVGLDTLSATLSEERDTLEDVTEPYLIF 304 Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329 +GFI++TPRGR+ +A++HL I Sbjct: 305 RGFIKKTPRGRIATKLAYEHLRI 327 >gi|107021765|ref|YP_620092.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia AU 1054] gi|116688711|ref|YP_834334.1| Holliday junction DNA helicase B [Burkholderia cenocepacia HI2424] gi|170732008|ref|YP_001763955.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia MC0-3] gi|254246309|ref|ZP_04939630.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia PC184] gi|123245284|sp|Q1BZ36|RUVB_BURCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231467|sp|A0K4L4|RUVB_BURCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238688561|sp|B1JVV3|RUVB_BURCC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|105891954|gb|ABF75119.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia AU 1054] gi|116646800|gb|ABK07441.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia HI2424] gi|124871085|gb|EAY62801.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia PC184] gi|169815250|gb|ACA89833.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia MC0-3] Length = 356 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 241/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+ LRPR L+++ GQ + L++FIEAAK R+E LDHVL GPPGLGKTTLA Sbjct: 21 SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 80 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 81 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ E L IV Sbjct: 141 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 200 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA R+RGTPRIA RLLRRVRDFAEV IT +ADAAL Sbjct: 201 RRSASLLNAQIDPNGALEIAKRARGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 260 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 261 LDVDPVGFDLMDRKLLEAILYKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 320 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ +P Sbjct: 321 TPRGRVATLLTYRHFGLSVP 340 >gi|237746840|ref|ZP_04577320.1| holliday junction DNA helicase B [Oxalobacter formigenes HOxBLS] gi|229378191|gb|EEO28282.1| holliday junction DNA helicase B [Oxalobacter formigenes HOxBLS] Length = 354 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/319 (58%), Positives = 238/319 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L E+ GQ + L++FI AA+ R EALDH L GPPGLGKTTLA + Sbjct: 22 NEEAVERALRPKYLSEYVGQHKTREQLEIFIAAARKRQEALDHTLLFGPPGLGKTTLAHI 81 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+GVN R TSGPV+ + GDLAA+LTNLE DVLFIDEIHR+S +VEEILYPA+ED+Q Sbjct: 82 IAREMGVNLRQTSGPVLERPGDLAAILTNLEANDVLFIDEIHRMSPVVEEILYPALEDYQ 141 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+++GEGP+ARSVK++L FTLI ATTR G+LTNPL+DRFG+ RL FY+I+DL IV Sbjct: 142 IDILIGEGPAARSVKLDLQPFTLIGATTRAGMLTNPLRDRFGVVARLEFYDIDDLTRIVT 201 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + ++ A EIA R+RGTPRIA RLLRRVRD+AEV ITRE+ADAAL L Sbjct: 202 RSAMLLKAPIVEDGAREIARRARGTPRIANRLLRRVRDYAEVKGTGEITREMADAALKML 261 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L + F GGPVGI ++A + E D IED++EPY+IQQG++QRT Sbjct: 262 DVDPVGFDLMDRKLLEAVLFKFSGGPVGIANLAAAIGEEVDTIEDVLEPYLIQQGYLQRT 321 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ ++H G+ P Sbjct: 322 PRGRIATTATYRHFGVVAP 340 >gi|206561677|ref|YP_002232442.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia J2315] gi|238693125|sp|B4EES7|RUVB_BURCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|198037719|emb|CAR53662.1| holliday junction DNA helicase [Burkholderia cenocepacia J2315] Length = 356 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 241/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+ LRPR L+++ GQ + L++FIEAAK R+E LDHVL GPPGLGKTTLA Sbjct: 21 SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 80 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 81 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ + L IV Sbjct: 141 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLSRIV 200 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRDFAEV IT +ADAAL Sbjct: 201 RRSASLLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 260 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 261 LDVDPVGFDLMDRKLLEAILYKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 320 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ +P Sbjct: 321 TPRGRVATLLTYRHFGLSVP 340 >gi|90411665|ref|ZP_01219675.1| Holliday junction DNA helicase RuvB [Photobacterium profundum 3TCK] gi|90327555|gb|EAS43908.1| Holliday junction DNA helicase RuvB [Photobacterium profundum 3TCK] Length = 337 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 190/334 (56%), Positives = 247/334 (73%), Gaps = 2/334 (0%) Query: 1 MMDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M++ + L+S + D ++ +RP+ L ++ GQ +++FI+AA+ R EALDH+L Sbjct: 1 MIEADRLISNSFESRDDEVIDRAIRPKLLNDYQGQDHVRGQMEIFIKAAQLRDEALDHLL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 IFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLS 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI Sbjct: 121 PHVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQ 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL +Y++ DLK IVQR A GL++ +E A E+A R+RGTPRIA RLLRRVRD+AEV Sbjct: 181 RLEYYKVGDLKDIVQRSADCLGLSMEEEGALEMAHRARGTPRIANRLLRRVRDYAEVVGN 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 I + A AL L +D GFD +D + L I F GGPVG++ ++A + E +D IED Sbjct: 241 GIICADTAKKALDMLDVDSSGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEEKDTIED 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++EPY+IQQGF+QRTPRGR+ A+ H G+DIP Sbjct: 301 VLEPYLIQQGFLQRTPRGRIATHRAYLHFGLDIP 334 >gi|167586147|ref|ZP_02378535.1| Holliday junction DNA helicase RuvB [Burkholderia ubonensis Bu] Length = 355 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/320 (60%), Positives = 240/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+ LRPR L+E+ GQ + L++FIEAAK R+E LDHVL GPPGLGKTTLA Sbjct: 20 SHEEVFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ E L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRD+AEV IT +ADAAL Sbjct: 200 RRSASLLNAQIDPSGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILYKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLAAP 339 >gi|317051308|ref|YP_004112424.1| Holliday junction DNA helicase RuvB [Desulfurispirillum indicum S5] gi|316946392|gb|ADU65868.1| Holliday junction DNA helicase RuvB [Desulfurispirillum indicum S5] Length = 341 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/331 (55%), Positives = 243/331 (73%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M E L+S + +ED LRP L ++ GQ NL VF++AAK R E +DH+LF G Sbjct: 1 MSEERLISGQIHEEDQQELRLRPENLSQYIGQQRLKDNLSVFLQAAKGRGEPVDHILFSG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTT+A ++A E+GVN RSTSGPVI K+ DLAA+LTNL+ DVLFIDEIHRL+ V Sbjct: 61 PPGLGKTTIAHIIANEMGVNIRSTSGPVIEKSADLAAILTNLQSGDVLFIDEIHRLNTSV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMEDFQLD+++G+GP+ARS+KI+L FTLI ATTR GLL++PL+DRFG+ RL Sbjct: 121 EEILYPAMEDFQLDIIIGQGPAARSIKIDLPPFTLIGATTRAGLLSSPLRDRFGVHSRLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FYE++DL I+ R A + G+A+ + A E+A RSRGTPRIA RLLRRVRDFA++ +I Sbjct: 181 FYEVDDLLAIITRSASILGIAIEGDGARELARRSRGTPRIANRLLRRVRDFAQIKGHGSI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 IA AL +L +D+ G D LD + L I F GGPVG++T++A +E R +ED+ E Sbjct: 241 DHAIARYALEQLEVDEAGLDYLDRKVLLAIIEKFSGGPVGLDTLAACTAEERGTLEDVCE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY+IQQG +QRTPRGR++ ++H G++ P Sbjct: 301 PYLIQQGLLQRTPRGRIITENGYRHFGLNSP 331 >gi|238796297|ref|ZP_04639806.1| Holliday junction DNA helicase RuvB [Yersinia mollaretii ATCC 43969] gi|238719742|gb|EEQ11549.1| Holliday junction DNA helicase RuvB [Yersinia mollaretii ATCC 43969] Length = 335 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/330 (58%), Positives = 246/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V S E++ +RP+ L E+ GQ +++FI+AAK R +ALDHVL Sbjct: 2 MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 61 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 62 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 122 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 181 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R AK GL +T E A ++A RSRGTPRI RLLRRVRDFAEV Sbjct: 182 LEFYQVADLEHIVARSAKCLGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 241 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I ++A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 242 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 301 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGFIQRTPRGR+ A++H GI Sbjct: 302 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 331 >gi|147673267|ref|YP_001217379.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O395] gi|172047658|sp|A5F760|RUVB_VIBC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|146315150|gb|ABQ19689.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O395] gi|227013743|gb|ACP09953.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O395] Length = 334 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/323 (57%), Positives = 241/323 (74%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 +S + E+ +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGK Sbjct: 11 ISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGK 70 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYP Sbjct: 71 TTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYP 130 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y++ D Sbjct: 131 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVAD 190 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L+ IVQR A+ GL++ E A E+A R+RGTPRI RLLRRVRD+AEV I + AD Sbjct: 191 LQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIVNRLLRRVRDYAEVKGDGHICAQTAD 250 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D GFD +D + L I F GGPVGI+ ++A + E +D IED++EP++IQQ Sbjct: 251 RALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQ 310 Query: 308 GFIQRTPRGRLLMPIAWQHLGID 330 G++QRTPRGR+ A+ H GI+ Sbjct: 311 GYLQRTPRGRIATDRAYLHFGIE 333 >gi|254253225|ref|ZP_04946543.1| Holliday junction DNA helicase RuvB [Burkholderia dolosa AUO158] gi|124895834|gb|EAY69714.1| Holliday junction DNA helicase RuvB [Burkholderia dolosa AUO158] Length = 355 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/320 (60%), Positives = 240/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+ LRPR L+++ GQ + L++FIEAAK R+E LDHVL GPPGLGKTTLA Sbjct: 20 SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ E L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRDFAEV IT +ADAAL Sbjct: 200 KRSASLLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLAAP 339 >gi|134294765|ref|YP_001118500.1| Holliday junction DNA helicase RuvB [Burkholderia vietnamiensis G4] gi|20140131|sp|Q93LP2|RUVB_BURCE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231473|sp|A4JBL2|RUVB_BURVG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|14572550|gb|AAK64609.1| RuvB [Burkholderia cepacia] gi|134137922|gb|ABO53665.1| Holliday junction DNA helicase RuvB [Burkholderia vietnamiensis G4] Length = 355 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 240/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+ LRPR L+++ GQ + L++FIEAAK R+E LDHVL GPPGLGKTTLA Sbjct: 20 SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ E L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRD+AEV IT +ADAAL Sbjct: 200 RRSAALLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGQITAAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339 >gi|325923398|ref|ZP_08185063.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas gardneri ATCC 19865] gi|325546113|gb|EGD17302.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas gardneri ATCC 19865] Length = 345 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/330 (59%), Positives = 250/330 (75%), Gaps = 5/330 (1%) Query: 2 MDREGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 MDR +++ + ++ED AD S+ RP+ L ++ GQ + ++I+AAKAR EA+DHVL Sbjct: 1 MDR--IIASSATREDDAADASI-RPKRLADYLGQQPVREQMDIYIQAAKARGEAMDHVLI 57 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ V+A ELGV+ RSTSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS Sbjct: 58 FGPPGLGKTTLSHVIANELGVSLRSTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSP 117 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI R Sbjct: 118 VVEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQR 177 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY E+L IV R A + G+ T + A EIA R+RGTPRIA RLLRRVRDFA+V + Sbjct: 178 LEFYSPEELTRIVIRSAAILGIDCTPDGAAEIARRARGTPRIANRLLRRVRDFAQVKASG 237 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I +A AA+ L +D GFD+LD R L +I +F GGPVG+E+++A LSE R +ED+ Sbjct: 238 HIDLPVAQAAMQMLKVDPEGFDELDRRMLRVIVDHFDGGPVGVESLAASLSEERGTLEDV 297 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 IEPY+IQQGF+ RT RGR+ A++HLG+ Sbjct: 298 IEPYLIQQGFLIRTARGRMATNKAYRHLGL 327 >gi|238762968|ref|ZP_04623935.1| Holliday junction DNA helicase RuvB [Yersinia kristensenii ATCC 33638] gi|238698726|gb|EEP91476.1| Holliday junction DNA helicase RuvB [Yersinia kristensenii ATCC 33638] Length = 334 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/330 (58%), Positives = 246/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V S E++ +RP+ L E+ GQ +++FI+AAK R +ALDHVL Sbjct: 1 MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R AK GL +T E A ++A RSRGTPRI RLLRRVRDFAEV Sbjct: 181 LEFYQVADLEHIVARSAKCLGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I ++A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGFIQRTPRGR+ A++H GI Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330 >gi|330811392|ref|YP_004355854.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379500|gb|AEA70850.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 353 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 239/313 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R+E+LDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 25 IRPVSLADYIGQPTVREQMELFIQAARGRSESLDHTLIFGPPGLGKTTLANIIAQEMGVS 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAALLTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 85 IKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY DL TIV R A + GL Sbjct: 145 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNNADLATIVSRSAGILGL 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV IT+ IAD AL L ID+ GFD Sbjct: 205 PLDPDGAYEIARRARGTPRIANRLLRRVRDFAEVRAKGHITKPIADLALNLLDIDERGFD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 265 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 324 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 325 HAYLHFGLNIPTR 337 >gi|167035194|ref|YP_001670425.1| Holliday junction DNA helicase RuvB [Pseudomonas putida GB-1] gi|189046042|sp|B0KTJ2|RUVB_PSEPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166861682|gb|ABZ00090.1| Holliday junction DNA helicase RuvB [Pseudomonas putida GB-1] Length = 348 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/321 (57%), Positives = 242/321 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ +RP +L+++ GQ + +FI+AA+ R+E+LDH L GPPGLGKTTLA + Sbjct: 15 REEVQDRAIRPLSLDDYIGQPVVREQMALFIQAARGRSESLDHTLIFGPPGLGKTTLANI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+GV+ +STSGP++ + GDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMEDFQ Sbjct: 75 IAHEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY +DL TIV Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSDKDLATIVS 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + GLA+ D A EIA R+RGTPRIA RLLRRVRD+AEV IT+ +AD AL L Sbjct: 195 RSANILGLAIEDLGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADMALNLL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D+ GFD D R L + F GGPVG++ ++A +SE R IED++EPY+IQQG+I RT Sbjct: 255 DVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDVLEPYLIQQGYIMRT 314 Query: 314 PRGRLLMPIAWQHLGIDIPHR 334 PRGR++ A+ H G++IP R Sbjct: 315 PRGRVVTRHAYLHFGLNIPGR 335 >gi|313894579|ref|ZP_07828142.1| Holliday junction DNA helicase RuvB [Veillonella sp. oral taxon 158 str. F0412] gi|313440769|gb|EFR59198.1| Holliday junction DNA helicase RuvB [Veillonella sp. oral taxon 158 str. F0412] Length = 334 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 191/323 (59%), Positives = 241/323 (74%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+ +ED LRP+ E+ GQ EA NL V+I+AAK R EALDHVL GPPGLG Sbjct: 7 LVGNGEHEEDIWQYSLRPKFFNEYVGQEEAKGNLNVYIQAAKQRGEALDHVLLYGPPGLG 66 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A ELGVNFR TSGP I K+GDLAA+LTNL+D DVLFIDEIHRLS VEE+LY Sbjct: 67 KTTLAGIIANELGVNFRITSGPAIEKSGDLAAILTNLDDHDVLFIDEIHRLSRSVEEVLY 126 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMED+ +D+++G+GPSAR+V+I+L +FTL+ ATTR G L PL+DRFGI RL +Y+ Sbjct: 127 SAMEDYAIDIIIGKGPSARTVRIDLPKFTLVGATTRAGALAAPLRDRFGIINRLEYYKQP 186 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV R A++ + + A EIA RSRGTPRIA RLL+RVRDFA+V IT++IA Sbjct: 187 ELEFIVTRAAEILKIGIEPTGASEIARRSRGTPRIANRLLKRVRDFAQVIGDGVITQDIA 246 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL RL IDK G D++D R L I N+ GGPVGI+TI+A +SE RD IED+ EPY++Q Sbjct: 247 DEALQRLYIDKEGLDRIDRRVLECIIGNYDGGPVGIDTIAAAISEERDTIEDVYEPYLMQ 306 Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329 GF+ RTPRGR+ +A++HLGI Sbjct: 307 LGFLGRTPRGRVATKLAYEHLGI 329 >gi|308070379|ref|YP_003871984.1| Holliday junction DNA helicase ruvB [Paenibacillus polymyxa E681] gi|305859658|gb|ADM71446.1| Holliday junction DNA helicase ruvB [Paenibacillus polymyxa E681] Length = 335 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 195/333 (58%), Positives = 245/333 (73%), Gaps = 3/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++S N+ ED L LRPR L E+ GQ + NLKV+IEAAK R EALDHVL Sbjct: 1 MDDR--IISANLMMEDQTAELSLRPRYLNEYIGQNQVKENLKVYIEAAKMRKEALDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL Sbjct: 59 YGPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE++YPAMEDF LD+M+G+GPSARSV+++L FTLI ATTR GLL+ PL+DRFG+ R Sbjct: 119 TVEEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVISR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++L IV R A + + + +AA EIA+RSRGTPRIA RLL+RVRDFA+VA Sbjct: 179 LEFYTTDELAYIVSRNADIMEIEIVGDAAEEIALRSRGTPRIANRLLKRVRDFAQVAGDG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I E+A AL RL ID +G D++D + L + +F GGPVG++TI+A + E IED+ Sbjct: 239 IIHSELAAEALKRLQIDPLGLDEIDHKMLKAMIHSFRGGPVGLDTIAATIGEESQTIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q G +QRTPRGR + P A+ HLGI +P Sbjct: 299 YEPYLLQIGLLQRTPRGRTVTPAAYAHLGILMP 331 >gi|70732088|ref|YP_261844.1| Holliday junction DNA helicase RuvB [Pseudomonas fluorescens Pf-5] gi|97190216|sp|Q4K7D9|RUVB_PSEF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|68346387|gb|AAY93993.1| Holliday junction DNA helicase RuvB [Pseudomonas fluorescens Pf-5] Length = 352 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/313 (59%), Positives = 237/313 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ +++FI+AA+ R E+LDH L GPPGLGKTTLA ++A E+GV+ Sbjct: 24 IRPVSLADYIGQPSVREQMELFIQAARGRNESLDHTLIFGPPGLGKTTLANIIAEEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAALLTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG Sbjct: 84 IKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY DL TIV R A + GL Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSTADLATIVSRSAGILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A E+A R+RGTPRIA RLLRRVRDFAEV IT+ IAD AL L +D+ GFD Sbjct: 204 PLDPEGAFEVARRARGTPRIANRLLRRVRDFAEVRAKGHITKPIADLALNLLDVDERGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 324 HAYLHFGLNIPSR 336 >gi|261211908|ref|ZP_05926195.1| holliday junction DNA helicase RuvB [Vibrio sp. RC341] gi|260839258|gb|EEX65890.1| holliday junction DNA helicase RuvB [Vibrio sp. RC341] Length = 334 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/309 (59%), Positives = 234/309 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ +++FI AA+ R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 25 IRPKKLADYQGQDHVRDQMEIFIMAAQQRQEALDHLLIFGPPGLGKTTLANIVANEMGVN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 85 IRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y + DL+ IVQR A GL Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYNVADLQNIVQRSAHCLGL 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ E A E+A R+RGTPRIA RLLRRVRD+AEV I E AD AL L +D GFD Sbjct: 205 SMDGEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAETADKALNMLDVDHQGFD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ +SA + E +D IED++EP++IQQG++QRTPRGR+ Sbjct: 265 YMDRKLLLAIMEKFSGGPVGLDNLSAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGRIATD 324 Query: 322 IAWQHLGID 330 A+ H G++ Sbjct: 325 RAYLHFGLE 333 >gi|304413291|ref|ZP_07394764.1| helicase subunit of Holliday junction resolvasome [Candidatus Regiella insecticola LSR1] gi|304284134|gb|EFL92527.1| helicase subunit of Holliday junction resolvasome [Candidatus Regiella insecticola LSR1] Length = 334 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/330 (58%), Positives = 243/330 (73%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ++ I +RP+ L E+ GQ+ +++FI+AAK R EALDH+L Sbjct: 1 MIEADRLISAQIINDEVIIDRAIRPKLLAEYIGQLPVREQMEIFIQAAKQRGEALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAALLTNLESHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 ++EEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY+I DL+ IV R A+ GL +T E A +A SRGTPRI RLLRRVRDFAEV Sbjct: 181 LEFYQIADLEQIVARSARCLGLTLTLEGAHHLARCSRGTPRITNRLLRRVRDFAEVKAQG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I IA AL L ID GFD +D + L I F GGPVG++ I+A + E R+ IED+ Sbjct: 241 VIDGPIAIKALEMLNIDGEGFDYMDRKLLLAIIDKFNGGPVGLDNIAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGFIQRTPRGR+ A+QH GI Sbjct: 301 LEPYLIQQGFIQRTPRGRIATQHAYQHCGI 330 >gi|50121416|ref|YP_050583.1| Holliday junction DNA helicase RuvB [Pectobacterium atrosepticum SCRI1043] gi|68715450|sp|Q6D4A2|RUVB_ERWCT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|49611942|emb|CAG75391.1| holliday junction DNA helicase [Pectobacterium atrosepticum SCRI1043] Length = 334 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/330 (57%), Positives = 249/330 (75%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + V +E+ +RP+ L+E+ GQ + +++FI+AA+ R +ALDH+L Sbjct: 1 MIEADRLISADAVPEEEFLDRAMRPKLLKEYVGQPQVREQMEIFIQAARKRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNMRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY + DL+ IV R A+ GL +T E + E+A R+RGTPRIA RLLRRVRDF+EV Sbjct: 181 LEFYNVADLQYIVGRSAQCLGLDLTQEGSLEVARRARGTPRIANRLLRRVRDFSEVKSEG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT +A AL LA+D GFD +D + L I F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AITGTVATQALDMLAVDTEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EP++IQQGFIQRTPRGR+ A++H G+ Sbjct: 301 LEPFLIQQGFIQRTPRGRMATQHAYRHFGL 330 >gi|329893680|ref|ZP_08269814.1| Holliday junction DNA helicase RuvB [gamma proteobacterium IMCC3088] gi|328923607|gb|EGG30919.1| Holliday junction DNA helicase RuvB [gamma proteobacterium IMCC3088] Length = 350 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/310 (59%), Positives = 235/310 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L ++ GQ + +F+ AAK R E LDH L GPPGLGKTTLA ++A E+GV+ Sbjct: 24 IRPKSLADYIGQSAVKEQMDIFLSAAKGRGEPLDHTLIFGPPGLGKTTLASIIANEMGVS 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGPV+ KAGD+AAL+TNLE DVLFIDEIHRLS VEE+LYPAMED+QLD+M+GEG Sbjct: 84 LKTTSGPVLDKAGDIAALMTNLEPGDVLFIDEIHRLSPFVEEVLYPAMEDYQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY + DL TIV R AK+ G+ Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNVADLATIVARSAKIMGV 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A E+A RSRGTPRIA RLLRRVRDFAEV +T+ IAD AL L +D GFD Sbjct: 204 DMEEGGAVEVARRSRGTPRIANRLLRRVRDFAEVKGDGIVTQTIADRALDMLNVDVQGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R L + F GGPVG+E+++A +SE R IED+IEPY+IQQG++ RTPRGR++ Sbjct: 264 HLDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDVIEPYLIQQGYMMRTPRGRMVTR 323 Query: 322 IAWQHLGIDI 331 A+ H G+D+ Sbjct: 324 NAYLHFGLDV 333 >gi|117617467|ref|YP_858103.1| Holliday junction DNA helicase RuvB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166231459|sp|A0KPA2|RUVB_AERHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|117558874|gb|ABK35822.1| Holliday junction DNA helicase RuvB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 336 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/333 (56%), Positives = 248/333 (74%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + +E+ I +RP+ L ++TGQ C +++FI AA+ R EALDH+L Sbjct: 1 MIEADRLISASGGREEEVIDRAIRPKLLADYTGQDPVCEQMEIFIAAARQRGEALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL IV R A+ GL +T++ A E+A RSRGTPRIA RLLRRVRDFA+V Sbjct: 181 LEFYNVKDLTDIVARSARCLGLDMTEDGALEVARRSRGTPRIANRLLRRVRDFAQVKSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I IA A+ L +D GFD +D + L + F GGPVG++ ++A + E +D IED+ Sbjct: 241 RIDGPIAARAMDMLDVDNEGFDFMDRKLLLAVIDKFLGGPVGLDNLAAAIGEEKDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQG++QRTPRGR+ P A+ H G+ P Sbjct: 301 LEPYLIQQGYLQRTPRGRIATPRAYAHFGLQRP 333 >gi|146329062|ref|YP_001210060.1| Holliday junction DNA helicase RuvB [Dichelobacter nodosus VCS1703A] gi|166231489|sp|A5EXH6|RUVB_DICNV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|146232532|gb|ABQ13510.1| holliday junction DNA helicase RuvB [Dichelobacter nodosus VCS1703A] Length = 338 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/333 (57%), Positives = 244/333 (73%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S E+ I +RP+ L ++ GQ + L +FIEAA R EALDHVL Sbjct: 1 MIESDRLVSGKARSEEQVIERAVRPKRLTDYVGQESLKAQLSIFIEAALKRQEALDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A ELGV R TSGP++ KAGDLAALLTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLAAIIAFELGVGLRQTSGPILDKAGDLAALLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMED+Q+D+M+GEGP+ARS+K++L FTLI ATTR GLLT PL+DRFGI Sbjct: 121 AVEEVLYPAMEDYQIDIMIGEGPAARSIKLDLPPFTLIGATTRSGLLTAPLRDRFGISHH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y ++L IV R AKL +A+ E A EI RSRGTPRIA RLLRRVRD+A+V Sbjct: 181 LQYYHHDELTQIVMRSAKLFEVAIDKEGAEEIGRRSRGTPRIANRLLRRVRDYAQVRGDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT+ +AD AL LA+D +GFD LD R L + FGGGP GI+T++ + E R +ED+ Sbjct: 241 MITKALADEALELLAVDHLGFDALDRRMLLCLVEYFGGGPTGIDTLAVSVGEERGTLEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQGFIQRTPRGR+ +A+Q+L I++P Sbjct: 301 VEPYLIQQGFIQRTPRGRVATELAYQYLNIEVP 333 >gi|261821380|ref|YP_003259486.1| Holliday junction DNA helicase RuvB [Pectobacterium wasabiae WPP163] gi|261605393|gb|ACX87879.1| Holliday junction DNA helicase RuvB [Pectobacterium wasabiae WPP163] Length = 334 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/308 (59%), Positives = 238/308 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E+ GQ + +++FI+AA+ R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 MRPKLLKEYVGQPQVREQMEIFIQAARKRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 83 MRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY + DL+ IV R A+ GL Sbjct: 143 PAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYNVADLQYIVGRSAQCLGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T E + E+A R+RGTPRIA RLLRRVRDF+EV IT ++A AL LA+D GFD Sbjct: 203 DLTPEGSLEVARRARGTPRIANRLLRRVRDFSEVKSEGAITGDVATQALDMLAVDTEGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+ Sbjct: 263 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRMATQ 322 Query: 322 IAWQHLGI 329 A++H G+ Sbjct: 323 HAYRHFGL 330 >gi|170723159|ref|YP_001750847.1| Holliday junction DNA helicase RuvB [Pseudomonas putida W619] gi|229890173|sp|B1JD70|RUVB_PSEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|169761162|gb|ACA74478.1| Holliday junction DNA helicase RuvB [Pseudomonas putida W619] Length = 348 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/321 (57%), Positives = 241/321 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ +RP L+E+ GQ + +FI+AA+ R E+LDH L GPPGLGKTTLA + Sbjct: 15 REEVQDRAIRPLRLDEYIGQPVVREQMALFIQAARGRNESLDHTLIFGPPGLGKTTLANI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A+E+GV+ +STSGP++ + GDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMEDFQ Sbjct: 75 IAQEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY +DL TIV Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSDKDLATIVS 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + GL + D+ A EIA R+RGTPRIA RLLRRVRD+AEV IT+ +AD AL L Sbjct: 195 RSANILGLVIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADLALNLL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D+ GFD D R L + F GGPVG++ ++A +SE R IED++EPY+IQQG+I RT Sbjct: 255 DVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDVLEPYLIQQGYIMRT 314 Query: 314 PRGRLLMPIAWQHLGIDIPHR 334 PRGR++ A+ H G+++P R Sbjct: 315 PRGRVVTRHAYLHFGLNVPGR 335 >gi|162421002|ref|YP_001606842.1| Holliday junction DNA helicase RuvB [Yersinia pestis Angola] gi|238687247|sp|A9QYX2|RUVB_YERPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|162353817|gb|ABX87765.1| Holliday junction DNA helicase RuvB [Yersinia pestis Angola] Length = 334 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/330 (58%), Positives = 244/330 (73%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V ++ I +RP+ L E+ GQ +++FI+AAK R +ALDHVL Sbjct: 1 MIEADRLISAAVINDEESIDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY + DL+ IV R AK GL +T E A ++A RSRGTPRI RLLRRVRDFAEV Sbjct: 181 LEFYPVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I E+A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AINGEVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGFIQRTPRGR+ A++H GI Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330 >gi|307245099|ref|ZP_07527192.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254054|ref|ZP_07535901.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258510|ref|ZP_07540247.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853988|gb|EFM86200.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862979|gb|EFM94926.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867414|gb|EFM99265.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 334 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/330 (56%), Positives = 247/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S + +E+ I +RP+ L ++ GQ +++FI+AAK R EALDH+L Sbjct: 1 MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL +IV+R A L ++ AA E+A RSRGTPRIA RLLRRVRD+A+V + Sbjct: 181 LEFYSVDDLTSIVKRSADCLNLNLSPNAAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT +IA AL L +D GFD +D++ L I F GGPVG++ ++A + E RD IED+ Sbjct: 241 VITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGF+QRTPRGR+ + HLGI Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGI 330 >gi|238754861|ref|ZP_04616211.1| Holliday junction DNA helicase RuvB [Yersinia ruckeri ATCC 29473] gi|238706872|gb|EEP99239.1| Holliday junction DNA helicase RuvB [Yersinia ruckeri ATCC 29473] Length = 334 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 191/331 (57%), Positives = 245/331 (74%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V E+ I +RP+ L E+ GQ +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGVISEEEIIDRAIRPKRLSEYVGQPHVREQMEIFIQAAKQRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY + DL+ IV R A+ GL +T E A ++A RSRGTPRI RLLRRVRDFAEV Sbjct: 181 LEFYPVADLEHIVARSAQCLGLELTQEGAHQLARRSRGTPRITNRLLRRVRDFAEVKADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I ++A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AINGDVAMKALDMLNVDAEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 +EPY+IQQGFIQRTPRGR+ A++H GI+ Sbjct: 301 LEPYLIQQGFIQRTPRGRIATHHAYKHFGIE 331 >gi|317402222|gb|EFV82811.1| Holliday junction ATP-dependent DNA helicase ruvB [Achromobacter xylosoxidans C54] Length = 357 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/311 (59%), Positives = 229/311 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE+ GQ A L++FI AA+ R EALDHVL GPPGLGKTTLA ++A E+GV Sbjct: 34 LRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG Sbjct: 94 LRQTSGPVLERPGDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY DL IV R A L Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNAGDLGRIVTRSAGLLNA 213 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T + A E+A R+RGTPRIA RLLRRVRD+AEV TI ++A AL L +D G D Sbjct: 214 VITPDGAAEVARRARGTPRIANRLLRRVRDYAEVKAGGTIDADVAGRALAMLEVDPQGLD 273 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR Sbjct: 274 LMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRTATL 333 Query: 322 IAWQHLGIDIP 332 W+HLG+ P Sbjct: 334 TTWRHLGLTPP 344 >gi|260768874|ref|ZP_05877808.1| holliday junction DNA helicase RuvB [Vibrio furnissii CIP 102972] gi|260616904|gb|EEX42089.1| holliday junction DNA helicase RuvB [Vibrio furnissii CIP 102972] gi|315180568|gb|ADT87482.1| Holliday junction DNA helicase B [Vibrio furnissii NCTC 11218] Length = 334 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/309 (59%), Positives = 238/309 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ +++FI+AA+ R+EALDH+L GPPGLGKTTLA +VA E+ V+ Sbjct: 25 IRPKKLADYRGQDHVRDQMEIFIQAAQKRSEALDHLLIFGPPGLGKTTLANIVANEMEVS 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 85 IRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y++ DL+ IVQR A GL Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSADCLGL 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ E A E+A R+RGTPRIA RLLRRVRDFAEV I +IAD AL L +D GFD Sbjct: 205 SMDAEGALEVARRARGTPRIANRLLRRVRDFAEVKGNGHICADIADKALNMLDVDHQGFD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I FGGGPVG++ ++A + E +D IED+IEP++IQQG++QRTPRGR+ Sbjct: 265 YMDRKLLLAIMEKFGGGPVGLDNLAAAIGEEKDTIEDVIEPFLIQQGYLQRTPRGRIATD 324 Query: 322 IAWQHLGID 330 A+ H G++ Sbjct: 325 RAYLHFGLE 333 >gi|270262222|ref|ZP_06190494.1| holliday junction ATP-dependent DNA helicase RuvB [Serratia odorifera 4Rx13] gi|270044098|gb|EFA17190.1| holliday junction ATP-dependent DNA helicase RuvB [Serratia odorifera 4Rx13] Length = 334 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/308 (59%), Positives = 235/308 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L E+ GQ +++FI+AAK R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY++ DL+ IV R A GL Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVSRSANCLGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +++E A ++A R+RGTPRIA RLLRRVRDFAEV I E+A AL L +D GFD Sbjct: 203 DLSEEGAHQVARRARGTPRIANRLLRRVRDFAEVRANGVINGEVAMQALDMLNVDAEGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E R+ IED+IEP++IQQGFIQRTPRGR+ Sbjct: 263 YMDRKLLLAIIDKFAGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGFIQRTPRGRMATN 322 Query: 322 IAWQHLGI 329 A++H GI Sbjct: 323 HAYKHFGI 330 >gi|94501015|ref|ZP_01307539.1| Holliday junction DNA helicase RuvB [Oceanobacter sp. RED65] gi|94426762|gb|EAT11746.1| Holliday junction DNA helicase RuvB [Oceanobacter sp. RED65] Length = 338 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/309 (59%), Positives = 236/309 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + +++FI AA+AR EALDH L GPPGLGKTTLA ++A EL VN Sbjct: 26 IRPTRLADYEGQPQVREQMEIFIGAARARQEALDHSLIFGPPGLGKTTLANIIAHELDVN 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRL+ VEE+LYPAMED+QLD+MVGEG Sbjct: 86 IKSTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLNPSVEEVLYPAMEDYQLDIMVGEG 145 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTL+ ATTR GLLT+PL+DRFGI RL FY + DL IV R A + G+ Sbjct: 146 PAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNVADLTGIVTRSAGMLGV 205 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRIA RLL+RVRD+A+V T+T+ IAD AL L +D G D Sbjct: 206 EIDHKGAGEIAQRSRGTPRIANRLLKRVRDYAQVKGDGTVTQNIADLALNMLHVDTHGLD 265 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L + FGGGPVG+++++A +SE RD IED++EPY+IQQGF+ RTPRGR++ Sbjct: 266 HMDRRLLLAMIEKFGGGPVGVDSLAAAISEERDTIEDVLEPYLIQQGFMMRTPRGRMVTE 325 Query: 322 IAWQHLGID 330 A+ H G++ Sbjct: 326 NAYLHFGLE 334 >gi|167855147|ref|ZP_02477918.1| Holliday junction DNA helicase RuvB [Haemophilus parasuis 29755] gi|167853692|gb|EDS24935.1| Holliday junction DNA helicase RuvB [Haemophilus parasuis 29755] Length = 334 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/330 (56%), Positives = 245/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S + +ED I +RP+ L ++ GQ +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRIISASAKKEDETIDRAIRPKMLADYVGQPSVREQMEIFIKAAKLRNDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY +EDL +IV R A L + AA EIA RSRGTPRIA RLLRRVRDFA+V + Sbjct: 181 LEFYSVEDLTSIVSRSASCLNLNLATNAAYEIARRSRGTPRIANRLLRRVRDFADVRNNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ +IA AL L +D GFD +D + L+ + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 IISSDIAKQALTMLDVDSEGFDFMDRKLLSAVIERFDGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGF+QRTPRGR+ + HLG+ Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYSHLGL 330 >gi|171319638|ref|ZP_02908732.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria MEX-5] gi|171095129|gb|EDT40135.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria MEX-5] Length = 355 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 240/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+ LRPR L+++ GQ + L++FIEAAK R+E LDHVL GPPGLGKTTLA Sbjct: 20 SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ + L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLARIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRDFAEV IT +ADAAL Sbjct: 200 RRSASLLNAHIDPSGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339 >gi|258626837|ref|ZP_05721644.1| Holliday junction DNA helicase RuvB [Vibrio mimicus VM603] gi|262165954|ref|ZP_06033691.1| holliday junction DNA helicase RuvB [Vibrio mimicus VM223] gi|258580884|gb|EEW05826.1| Holliday junction DNA helicase RuvB [Vibrio mimicus VM603] gi|262025670|gb|EEY44338.1| holliday junction DNA helicase RuvB [Vibrio mimicus VM223] Length = 334 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/309 (58%), Positives = 235/309 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 25 IRPKKLADYQGQDHVRDQMEIFIKAAQQRQEALDHLLIFGPPGLGKTTLANIVANEMGVN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 85 IRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y + DL+ IVQR A GL Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYNVADLQNIVQRSAHCLGL 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ E A E+A R+RGTPRIA RLLRRVRD+AEV I + AD AL L +D GFD Sbjct: 205 SMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTADKALNMLDVDHQGFD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E +D IED++EP++IQQG++QRTPRGR+ Sbjct: 265 YMDRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGRIATD 324 Query: 322 IAWQHLGID 330 A+ H G++ Sbjct: 325 RAYLHFGLE 333 >gi|88705606|ref|ZP_01103316.1| Holliday junction DNA helicase ruvB [Congregibacter litoralis KT71] gi|88700119|gb|EAQ97228.1| Holliday junction DNA helicase ruvB [Congregibacter litoralis KT71] Length = 356 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/318 (58%), Positives = 242/318 (76%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 EDA +RP++L E+ GQ A +++F+ AAK R E LDH L GPPGLGKTTLA ++ Sbjct: 17 EDAQDRAVRPKSLGEYIGQPVAREQMEIFLAAAKGREEPLDHTLIFGPPGLGKTTLASII 76 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GV+ ++TSGPV+ KAGD+AAL+TNLE DVLFIDEIHRLS VEEILYPAMED+QL Sbjct: 77 ANEMGVSLKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLSPFVEEILYPAMEDYQL 136 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY +EDL IV R Sbjct: 137 DIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYGVEDLAVIVAR 196 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A++ + + D+ A EIA RSRGTPRIA RLLRRVRD+AEV + +IAD AL L+ Sbjct: 197 SARILEIPMDDDGAREIARRSRGTPRIANRLLRRVRDYAEVKGDGMVNADIADRALDLLS 256 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD LD R L + F GGPVG+++++A +SE R IED++EP++IQQG++ RTP Sbjct: 257 VDAKGFDHLDRRLLLAMIEKFDGGPVGVDSLAAAISEERGTIEDVLEPFLIQQGYMIRTP 316 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR++ +A+QH G+ +P Sbjct: 317 RGRMVTRLAYQHFGVPMP 334 >gi|115350635|ref|YP_772474.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria AMMD] gi|122324005|sp|Q0BI83|RUVB_BURCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|115280623|gb|ABI86140.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria AMMD] Length = 355 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 240/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+ LRPR L+++ GQ + L++FIEAAK R+E LDHVL GPPGLGKTTLA Sbjct: 20 SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ + L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLARIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRDFAEV IT +ADAAL Sbjct: 200 RRSASLLNAHIDPSGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339 >gi|319795911|ref|YP_004157551.1| holliday junction DNA helicase ruvb [Variovorax paradoxus EPS] gi|315598374|gb|ADU39440.1| Holliday junction DNA helicase RuvB [Variovorax paradoxus EPS] Length = 354 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/319 (58%), Positives = 235/319 (73%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L+E+ GQ + L++FI AA+ R EALDHVL GPPGLGKTTL+ + Sbjct: 24 NEEAIERALRPKLLDEYVGQAKVREQLEIFIGAARKRKEALDHVLLFGPPGLGKTTLSHI 83 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 84 IAAELGVNLRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDYQ 143 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 144 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELALIVT 203 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A+L + D EIA RSRGTPRIA RLLRRVRD+AEV IT +IA AL L Sbjct: 204 RSARLLKVETDDTGGFEIARRSRGTPRIANRLLRRVRDYAEVKGNGRITEDIAHKALAML 263 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L + F GGPVG++ ++A + E RD IED+IEPY+IQQG++QRT Sbjct: 264 DVDPQGFDLMDRKLLEAVIHRFDGGPVGLDNVAASIGEERDTIEDVIEPYLIQQGYLQRT 323 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A++HLG+ P Sbjct: 324 PRGRIATLAAYRHLGVTPP 342 >gi|238792584|ref|ZP_04636217.1| Holliday junction DNA helicase RuvB [Yersinia intermedia ATCC 29909] gi|238728219|gb|EEQ19740.1| Holliday junction DNA helicase RuvB [Yersinia intermedia ATCC 29909] Length = 334 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 191/330 (57%), Positives = 246/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + S E++ +RP+ L E+ GQ +++FI+AAK R +ALDHVL Sbjct: 1 MIEADRLISAGIISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL +T E A ++A RSRGTPRI RLLRRVRDFAEV Sbjct: 181 LEFYQVADLEHIVARSARCMGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I ++A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGFIQRTPRGR+ A++H GI Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330 >gi|262404189|ref|ZP_06080744.1| holliday junction DNA helicase RuvB [Vibrio sp. RC586] gi|262349221|gb|EEY98359.1| holliday junction DNA helicase RuvB [Vibrio sp. RC586] Length = 334 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/309 (58%), Positives = 235/309 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 25 IRPKKLADYQGQDHVRDQMEIFIKAAQQREEALDHLLIFGPPGLGKTTLANIVANEMGVN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 85 IRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y + DL+ IVQR A GL Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYNVADLQNIVQRSAHCLGL 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ E A E+A R+RGTPRIA RLLRRVRD+AEV I + AD AL L +D GFD Sbjct: 205 SMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTADKALNMLDVDHQGFD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E +D IED++EP++IQQG++QRTPRGR+ Sbjct: 265 YMDRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGRIATD 324 Query: 322 IAWQHLGID 330 A+ H G++ Sbjct: 325 RAYLHFGLE 333 >gi|170699605|ref|ZP_02890644.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria IOP40-10] gi|170135487|gb|EDT03776.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria IOP40-10] Length = 354 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 240/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+ LRPR L+++ GQ + L++FIEAAK R+E LDHVL GPPGLGKTTLA Sbjct: 20 SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ + L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLARIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRDFAEV IT +ADAAL Sbjct: 200 RRSASLLNAHIDPNGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339 >gi|319761304|ref|YP_004125241.1| holliday junction DNA helicase ruvb [Alicycliphilus denitrificans BC] gi|317115865|gb|ADU98353.1| Holliday junction DNA helicase RuvB [Alicycliphilus denitrificans BC] Length = 357 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/320 (58%), Positives = 237/320 (74%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 QE+A LRP+ L+E+ GQ +A L++FI AA+ R+EALDHVL GPPGLGKTTL+ Sbjct: 29 QQEEALERALRPKLLQEYVGQAKAREQLEIFIGAARKRSEALDHVLLFGPPGLGKTTLSH 88 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 89 IIAAELGVNLRQTSGPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDY 148 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 149 QIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELALIV 208 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L G + D EIA RSRGTPRIA RLLRRVRD+A+V IT ++A+ AL Sbjct: 209 MRSASLLGTPIDDAGGAEIARRSRGTPRIANRLLRRVRDYADVKGTGRITLDMANRALTL 268 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D GFD +D + L + F GGPVG++ I+A + E IED+IEPY+IQQG++QR Sbjct: 269 LDVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGYLQR 328 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ A++HLG+ P Sbjct: 329 TPRGRVATLAAYRHLGVAPP 348 >gi|225023913|ref|ZP_03713105.1| hypothetical protein EIKCOROL_00779 [Eikenella corrodens ATCC 23834] gi|224943387|gb|EEG24596.1| hypothetical protein EIKCOROL_00779 [Eikenella corrodens ATCC 23834] Length = 343 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/317 (60%), Positives = 236/317 (74%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+ LRP+TL ++ GQ + L +FI+AAK R EALDH L GPPGLGKTTLA Sbjct: 23 SQEEQLERALRPKTLADYIGQAKTKEQLGIFIQAAKKRGEALDHTLLFGPPGLGKTTLAH 82 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 83 IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY DL TIV Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYSSADLATIV 202 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L +++ D A EIA RSRGTPRIA RLLRRVRD+AEV + +ADAAL Sbjct: 203 SRSAGLLQMSLDDTGAFEIARRSRGTPRIANRLLRRVRDYAEVKSNGRVDAALADAALQM 262 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D ++L + F GGPVG++ I+A + E D IED+IEPY+IQQGF+QR Sbjct: 263 LDVDNEGLDMMDRKFLEAVLHKFAGGPVGLDNIAAAIGESPDTIEDVIEPYLIQQGFLQR 322 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR+ ++ H G+ Sbjct: 323 TPRGRVATERSYSHFGL 339 >gi|161525865|ref|YP_001580877.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans ATCC 17616] gi|189349414|ref|YP_001945042.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans ATCC 17616] gi|221202297|ref|ZP_03575331.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD2M] gi|221209111|ref|ZP_03582105.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD2] gi|221214502|ref|ZP_03587473.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD1] gi|238687039|sp|A9AH73|RUVB_BURM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|160343294|gb|ABX16380.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans ATCC 17616] gi|189333436|dbj|BAG42506.1| holliday junction DNA helicase [Burkholderia multivorans ATCC 17616] gi|221165759|gb|EED98234.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD1] gi|221171015|gb|EEE03468.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD2] gi|221177871|gb|EEE10284.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD2M] Length = 355 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/320 (60%), Positives = 239/320 (74%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+ LRPR L+++ GQ + L++FIEAAK R E LDHVL GPPGLGKTTLA Sbjct: 20 SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRREPLDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ + L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLSRIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR A L + A EIA RSRGTPRIA RLLRRVRD+AEV IT IADAAL Sbjct: 200 QRSASLLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGQITAAIADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLAAP 339 >gi|172059668|ref|YP_001807320.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria MC40-6] gi|238689178|sp|B1YTD9|RUVB_BURA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|171992185|gb|ACB63104.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria MC40-6] Length = 354 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 240/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+ LRPR L+++ GQ + L++FIEAAK R+E LDHVL GPPGLGKTTLA Sbjct: 20 SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ + L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLARIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRDFAEV IT +ADAAL Sbjct: 200 RRSASLLNAHIDPSGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339 >gi|163855206|ref|YP_001629504.1| Holliday junction DNA helicase RuvB [Bordetella petrii DSM 12804] gi|163258934|emb|CAP41233.1| holliday junction DNA helicase [Bordetella petrii] Length = 353 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/311 (59%), Positives = 230/311 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ A L++FI AA+ R EALDHVL GPPGLGKTTLA ++A E+GV Sbjct: 34 LRPKALQEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG Sbjct: 94 LRQTSGPVLERPGDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY +DL IV R A L Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNADDLARIVTRSAGLLQA 213 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T + A E+A RSRGTPRIA RLLRRVRD+A+V TI + A AL L +D G D Sbjct: 214 EITPDGAAEVARRSRGTPRIANRLLRRVRDYAQVKSHGTIDADSAGRALAMLEVDPQGLD 273 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR+ Sbjct: 274 LMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRMATQ 333 Query: 322 IAWQHLGIDIP 332 W+HLG+ P Sbjct: 334 TTWRHLGLAPP 344 >gi|319896644|ref|YP_004134837.1| holliday junction DNA helicase ruvb [Haemophilus influenzae F3031] gi|317432146|emb|CBY80497.1| holliday junction DNA helicase RuvB [Haemophilus influenzae F3031] Length = 335 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/315 (57%), Positives = 236/315 (74%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ + C + +FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 16 EDVIDRAIRPKLLADYVGQPQVCEQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QL Sbjct: 76 ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY +EDL +IV R Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + +AA E+A RSRGTPRIA RLLRRVRD+A+V + I+ +A AL L Sbjct: 196 SAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGIISINVAKQALSMLD 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD LD + L+ + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315 Query: 315 RGRLLMPIAWQHLGI 329 RGR+ ++H G+ Sbjct: 316 RGRIATSQTYRHFGL 330 >gi|89899630|ref|YP_522101.1| Holliday junction DNA helicase RuvB [Rhodoferax ferrireducens T118] gi|123397365|sp|Q220I3|RUVB_RHOFD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|89344367|gb|ABD68570.1| Holliday junction DNA helicase RuvB [Rhodoferax ferrireducens T118] Length = 358 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/319 (58%), Positives = 239/319 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L+E+ GQ + L++FI AA+ R EALDHVL GPPGLGKTTL+ + Sbjct: 25 NEEAVERALRPKLLDEYVGQAKVREQLEIFISAARMRDEALDHVLLFGPPGLGKTTLSHI 84 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED++ Sbjct: 85 IAHELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYK 144 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+K++L FTLI ATTR G+LTNPL+DRFGI RL FY E+L +IV+ Sbjct: 145 IDIMIGEGPAARSIKLDLQPFTLIGATTRAGMLTNPLRDRFGIVARLEFYSPEELASIVR 204 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + ++ EIA RSRGTPRIA RLLRRVRD+A+V A IT +IA AL+ L Sbjct: 205 RSAGLLKVPTDEKGGFEIARRSRGTPRIANRLLRRVRDYADVKGAGEITLDIAHRALVML 264 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L + F GGPVG++ I+A + E R+ IED+IEPY+IQQG++QRT Sbjct: 265 DVDPQGFDLMDRKLLEAVIHRFDGGPVGLDNIAASIGEERETIEDVIEPYLIQQGYLQRT 324 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A++HLG+ P Sbjct: 325 PRGRIATLAAYKHLGVTPP 343 >gi|270156710|ref|ZP_06185367.1| Holliday junction DNA helicase RuvB [Legionella longbeachae D-4968] gi|289164842|ref|YP_003454980.1| Holliday junction DNA helicase RuvB [Legionella longbeachae NSW150] gi|269988735|gb|EEZ94989.1| Holliday junction DNA helicase RuvB [Legionella longbeachae D-4968] gi|288858015|emb|CBJ11875.1| putative Holliday junction DNA helicase RuvB [Legionella longbeachae NSW150] Length = 338 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/321 (57%), Positives = 240/321 (74%), Gaps = 1/321 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 NVS E D ++ RP +L E+ GQ S +++FI+AAK R++ALDHVL GPPGLGKTTL Sbjct: 13 NVSDEVIDRAI-RPLSLREYIGQENVSSQMQIFIDAAKKRSDALDHVLIFGPPGLGKTTL 71 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+GVN R TSGPVI +AGD+AA+LTNL++ D+LFIDEIHRLS ++EE+LYPAME Sbjct: 72 ANIIAHEMGVNLRQTSGPVIERAGDIAAILTNLQENDILFIDEIHRLSPVIEEVLYPAME 131 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D++LD+M+GEGP+ARS+K+ L FTLI ATTR GLLT+PL+DRFGI RL +Y ++ L Sbjct: 132 DYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSLTK 191 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R A+L + E A EIA+RSRGTPRIA RLLRRVRD+AEV I E+A AL Sbjct: 192 IVARSAQLLNVKTQPEGAREIALRSRGTPRIANRLLRRVRDYAEVKGGGIINIEVAQKAL 251 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L +DK GFD +D + L + F GGPVGI++I+A + E + IED++EP++IQQGF+ Sbjct: 252 EMLDVDKYGFDLMDRKLLMAVIEQFSGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFL 311 Query: 311 QRTPRGRLLMPIAWQHLGIDI 331 RTPRGR+ A+ H GI I Sbjct: 312 MRTPRGRIATRRAYMHFGIAI 332 >gi|330823178|ref|YP_004386481.1| Holliday junction ATP-dependent DNA helicase ruvB [Alicycliphilus denitrificans K601] gi|329308550|gb|AEB82965.1| Holliday junction ATP-dependent DNA helicase ruvB [Alicycliphilus denitrificans K601] Length = 375 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/319 (58%), Positives = 237/319 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QE+A LRP+ L+E+ GQ +A L++FI AA+ R+EALDHVL GPPGLGKTTL+ + Sbjct: 48 QEEALERALRPKLLQEYVGQAKAREQLEIFIGAARKRSEALDHVLLFGPPGLGKTTLSHI 107 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 108 IAAELGVNLRQTSGPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDYQ 167 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 168 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELALIVM 227 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L G + D EIA RSRGTPRIA RLLRRVRD+A+V IT ++A+ AL L Sbjct: 228 RSASLLGTPIDDAGGAEIARRSRGTPRIANRLLRRVRDYADVKGTGRITLDMANRALTLL 287 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L + F GGPVG++ I+A + E IED+IEPY+IQQG++QRT Sbjct: 288 DVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGYLQRT 347 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A++HLG+ P Sbjct: 348 PRGRVATLAAYRHLGVAPP 366 >gi|167470861|ref|ZP_02335565.1| Holliday junction DNA helicase RuvB [Yersinia pestis FV-1] Length = 329 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 191/328 (58%), Positives = 244/328 (74%), Gaps = 1/328 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V ++ I +RP+ L E+ GQ +++FI+AAK R +ALDHVL Sbjct: 1 MIEADRLISAAVINDEESIDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R AK GL +T E A ++A RSRGTPRI RLLRRVRDFAEV Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I E+A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AINGEVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327 +EPY+IQQGFIQRTPRGR+ A++HL Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHL 328 >gi|149375112|ref|ZP_01892884.1| Holliday junction DNA helicase B [Marinobacter algicola DG893] gi|149360476|gb|EDM48928.1| Holliday junction DNA helicase B [Marinobacter algicola DG893] Length = 342 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/330 (56%), Positives = 244/330 (73%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L++ Q E+ +RP L ++ GQ +++FI AA+ R EALDHVL Sbjct: 1 MIESDRLITAQAGQYEEVQDRAIRPGVLADYVGQPAVREQMEIFISAARGRQEALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIANEMGVSIKTTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLSA 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI R Sbjct: 121 AVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY +DL I+ R A+L+ + + + A EIA RSRGTPRIA RLLRRVRDFAEV Sbjct: 181 LEFYNTKDLTDIILRSARLSSVTIDNGGAYEIARRSRGTPRIANRLLRRVRDFAEVKADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ IAD AL L +D GFD +D R L + F GGPVG+E+++A +SE R IED+ Sbjct: 241 RISESIADQALNMLKVDAQGFDHMDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EP++IQQGF+ RTPRGR++ A+QH G+ Sbjct: 301 LEPFLIQQGFMVRTPRGRMVTSNAYQHFGV 330 >gi|293603636|ref|ZP_06686057.1| crossover junction ATP-dependent DNA helicase RuvB [Achromobacter piechaudii ATCC 43553] gi|292818072|gb|EFF77132.1| crossover junction ATP-dependent DNA helicase RuvB [Achromobacter piechaudii ATCC 43553] Length = 369 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/311 (59%), Positives = 230/311 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ A L++FI AA+ R EALDHVL GPPGLGKTTLA ++A E+GV Sbjct: 46 LRPKALQEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 105 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG Sbjct: 106 LRQTSGPVLERPGDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 165 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY DL IV R A L Sbjct: 166 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNATDLGHIVTRSAGLLNA 225 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T + A E+A R+RGTPRIA RLLRRVRD+AEV + TI ++A AL L +D G D Sbjct: 226 TITPDGAAEVARRARGTPRIANRLLRRVRDYAEVKASGTIDADVAGRALAMLEVDPQGLD 285 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR Sbjct: 286 LMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRTATL 345 Query: 322 IAWQHLGIDIP 332 W+HLG+ P Sbjct: 346 STWRHLGLAPP 356 >gi|33152770|ref|NP_874123.1| Holliday junction DNA helicase B [Haemophilus ducreyi 35000HP] gi|44888427|sp|Q7VKV5|RUVB_HAEDU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|33148994|gb|AAP96512.1| Holliday junction DNA helicase RuvB [Haemophilus ducreyi 35000HP] Length = 334 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/310 (58%), Positives = 237/310 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ +++FI+AAK R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKLLTDYVGQPSVREQMEIFIKAAKLRHEALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE D+LFIDEIHRLS +EE+LYPAMED+QLD+M+GEG Sbjct: 83 IRTTSGPVLEKAGDLAAMLTNLEPYDILFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY ++DL +IV+R A L Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYNVDDLTSIVKRSAACLNL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ + A E+A RSRGTPRIA RLLRRVRD+A+V + IT EIA AL+ L +D GFD Sbjct: 203 NLSADGAYEVARRSRGTPRIANRLLRRVRDYADVRNNGVITSEIAKQALVMLDVDPQGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D++ L I F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+ Sbjct: 263 FMDIKLLQAIVERFDGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRIATT 322 Query: 322 IAWQHLGIDI 331 + HLGI + Sbjct: 323 RTYAHLGISL 332 >gi|46143843|ref|ZP_00133974.2| COG2255: Holliday junction resolvasome, helicase subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|303252522|ref|ZP_07338685.1| hypothetical protein APP2_1499 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247271|ref|ZP_07529320.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249499|ref|ZP_07531487.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307256312|ref|ZP_07538095.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260745|ref|ZP_07542434.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|322514921|ref|ZP_08067936.1| crossover junction ATP-dependent DNA helicase RuvB [Actinobacillus ureae ATCC 25976] gi|171855132|sp|A3MZ06|RUVB_ACTP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|302648490|gb|EFL78683.1| hypothetical protein APP2_1499 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856244|gb|EFM88398.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858492|gb|EFM90560.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306865138|gb|EFM97038.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869584|gb|EFN01372.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|322119109|gb|EFX91263.1| crossover junction ATP-dependent DNA helicase RuvB [Actinobacillus ureae ATCC 25976] Length = 334 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/330 (56%), Positives = 247/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S + +E+ I +RP+ L ++ GQ +++FI+AAK R EALDH+L Sbjct: 1 MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL +IV+R A L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V + Sbjct: 181 LEFYSVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT +IA AL L +D GFD +D++ L I F GGPVG++ ++A + E RD IED+ Sbjct: 241 VITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGF+QRTPRGR+ + HLGI Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGI 330 >gi|254482449|ref|ZP_05095688.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium HTCC2148] gi|214037140|gb|EEB77808.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium HTCC2148] Length = 351 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/319 (57%), Positives = 239/319 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +EDA +RP++L E+ GQ C + +F++AAK R E LDH L GPPGLGKTTLA + Sbjct: 16 REDALDRAIRPKSLAEYVGQKVVCDQMSIFLQAAKGRDEPLDHTLIFGPPGLGKTTLASI 75 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+GV+ ++TSGPV+ KAGD+AAL+TNLE DVLFIDEIHRLS VEE+LYPAMED+Q Sbjct: 76 IANEMGVSLKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLSPFVEEVLYPAMEDYQ 135 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FYE+ DL IV+ Sbjct: 136 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYEVADLAHIVE 195 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + + + + A EIA RSRGTPRIA RLLRRVRD+AEV IT +AD AL L Sbjct: 196 RSANILEIGIDTKGATEIARRSRGTPRIANRLLRRVRDYAEVKADGYITDAVADRALDML 255 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 ++D+ GFD D R + + F GGPVG+++++A +SE R IED++EPY+IQQGF+ RT Sbjct: 256 SVDQHGFDHQDRRLMLTMIEKFDGGPVGVDSLAAAISEERGTIEDVLEPYLIQQGFMVRT 315 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR++ A+ H G+ P Sbjct: 316 PRGRMVTRNAYLHFGLPQP 334 >gi|238786431|ref|ZP_04630351.1| Holliday junction DNA helicase RuvB [Yersinia bercovieri ATCC 43970] gi|238712665|gb|EEQ04757.1| Holliday junction DNA helicase RuvB [Yersinia bercovieri ATCC 43970] Length = 335 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 191/330 (57%), Positives = 246/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S V S E++ +RP+ L E+ GQ +++FI+AA+ R +ALDHVL Sbjct: 2 MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAARQRGDALDHVLI 61 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 62 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 122 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 181 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL +T E A ++A RSRGTPRI RLLRRVRDFAEV Sbjct: 182 LEFYQVADLEHIVSRSARCMGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 241 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I ++A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 242 AIDGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 301 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGFIQRTPRGR+ A++H GI Sbjct: 302 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 331 >gi|303249557|ref|ZP_07335764.1| hypothetical protein APP6_0959 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251816|ref|ZP_07533718.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307262876|ref|ZP_07544500.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|302651631|gb|EFL81780.1| hypothetical protein APP6_0959 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860723|gb|EFM92734.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871781|gb|EFN03501.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 334 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/330 (56%), Positives = 247/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S + +E+ I +RP+ L ++ GQ +++FI+AAK R EALDH+L Sbjct: 1 MIEADRIISASPKREEEIIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL +IV+R A L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V + Sbjct: 181 LEFYSVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT +IA AL L +D GFD +D++ L I F GGPVG++ ++A + E RD IED+ Sbjct: 241 VITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGF+QRTPRGR+ + HLGI Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGI 330 >gi|113866526|ref|YP_725015.1| Holliday junction DNA helicase RuvB [Ralstonia eutropha H16] gi|123033277|sp|Q0KEC4|RUVB_RALEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|113525302|emb|CAJ91647.1| holliday junction resolvasome, helicase subunit RuvB [Ralstonia eutropha H16] Length = 352 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 190/321 (59%), Positives = 242/321 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+A LRP+ L+E+ GQ + L +F+ AA+ R EALDHVL GPPGLGKTTLA Sbjct: 21 SQEEAFERALRPKLLDEYVGQEKVRGQLDIFMHAARNRREALDHVLLFGPPGLGKTTLAH 80 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 81 IIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L IV Sbjct: 141 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTADELARIV 200 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L + + A EIA R+RGTPRIA RLLRRVRD+AEV ITR +ADAAL Sbjct: 201 TRSAQLLHARIDPQGALEIARRARGTPRIANRLLRRVRDYAEVKGDGNITRAMADAALAM 260 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L + FGGGPVG++ ++A + E RD IED++EPY+IQQG++QR Sbjct: 261 LDVDSVGFDLMDRKLLEAVLHKFGGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGYLQR 320 Query: 313 TPRGRLLMPIAWQHLGIDIPH 333 TPRGR+ A++H G+ P Sbjct: 321 TPRGRVATAAAYRHFGLANPQ 341 >gi|321472926|gb|EFX83895.1| hypothetical protein DAPPUDRAFT_315314 [Daphnia pulex] Length = 339 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/331 (58%), Positives = 248/331 (74%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M LL+ N + D LRP +LE F GQ NL+VFI++AK R EALDHVLF G Sbjct: 1 MTEARLLTPNPQEGDFSDKSLRPLSLETFVGQEPLRRNLRVFIDSAKVRGEALDHVLFFG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PGLGKTTLAQ+VA+ELGVNFR TSGP I++AGDLAALLTNL+ RDVLFIDEIHRL+ V Sbjct: 61 SPGLGKTTLAQIVAQELGVNFRITSGPTISRAGDLAALLTNLQPRDVLFIDEIHRLNTAV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPA+EDF+LDLM+GEGP+ARS++I+L FTLI ATTR GLL+ PL+DRFG+ + L Sbjct: 121 EEILYPALEDFKLDLMIGEGPAARSLRIDLQPFTLIGATTRSGLLSAPLRDRFGVLLNLV 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY +L+ I+ + A L++ EAA E+A RSRGTPR+A RLLRRVR+FA V + + Sbjct: 181 FYTPLELQRILLQAATKLDLSLPSEAAFELARRSRGTPRVALRLLRRVRNFAVVQQSSCV 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 + AL L +D++G D LD RYL+ IA F GGPVGIET++A L+E R+ +E+++E Sbjct: 241 EVALVRQALDHLDVDEVGLDALDRRYLSHIALYFLGGPVGIETLAAALAEERETLEEIVE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 P++IQQGF+QRT RGR+L P A+ HLG+ P Sbjct: 301 PFLIQQGFLQRTSRGRVLSPKAYTHLGLPSP 331 >gi|110833614|ref|YP_692473.1| Holliday junction DNA helicase RuvB [Alcanivorax borkumensis SK2] gi|122959608|sp|Q0VRJ7|RUVB_ALCBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|110646725|emb|CAL16201.1| Holliday junction DNA helicase RuvB [Alcanivorax borkumensis SK2] Length = 342 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/322 (57%), Positives = 237/322 (73%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+ +RP +L ++ GQ + +++FI+AA+ R EALDH L GPPGLGKTTLA Sbjct: 14 SQEEQQDRAIRPASLADYHGQPKVSERMEIFIDAARGRNEALDHTLIFGPPGLGKTTLAH 73 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+G + +STSGPV+ KAGDLAA+LTNLE+ DVLF+DEIHRLS +VEEILYPAMED+ Sbjct: 74 IIAREMGCDLKSTSGPVLEKAGDLAAILTNLEEGDVLFVDEIHRLSPVVEEILYPAMEDY 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARS+K++L FTL+ ATTR GLLT PL+DRFGI RL FY ++DL IV Sbjct: 134 QLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTAPLRDRFGIVQRLEFYSVDDLSGIV 193 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R + + + A E+A R+RGTPRIA RLLRRVRD+AEV IT EIA AL Sbjct: 194 SRACDILAIPIEAAGAMEVARRARGTPRIANRLLRRVRDYAEVKGDGRITEEIAQRALDM 253 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D D R L MI F GGPVG+E+++A L+E +E+++EPY+IQQGFIQR Sbjct: 254 LEVDSCGLDGTDRRLLDMIMHKFDGGPVGLESLAAALNEDSGTLEEVVEPYLIQQGFIQR 313 Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334 TPRGR + AW+H G+ P + Sbjct: 314 TPRGRAVTNHAWRHFGLQRPRQ 335 >gi|320539864|ref|ZP_08039523.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Serratia symbiotica str. Tucson] gi|320030050|gb|EFW12070.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Serratia symbiotica str. Tucson] Length = 335 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/309 (59%), Positives = 236/309 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L E+ GQ C +++FI+AA+ R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKLLAEYVGQPHVCEQMEIFIQAARQRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY++ DL+ IV R A+ GL Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQLIVSRSARCLGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ + A +IA R+RGTPRIA RLLRRVRDFAEV I E+A AL L +D GFD Sbjct: 203 DLSGDGAHQIARRARGTPRIANRLLRRVRDFAEVRANGLINGEVAMQALDMLNVDAEGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E R+ IED+IEP++IQ GFIQRTPRGR+ Sbjct: 263 YMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDVIEPFLIQHGFIQRTPRGRMATH 322 Query: 322 IAWQHLGID 330 A++H GI+ Sbjct: 323 HAYRHFGIE 331 >gi|325528761|gb|EGD05823.1| Holliday junction DNA helicase RuvB [Burkholderia sp. TJI49] Length = 355 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 192/320 (60%), Positives = 240/320 (75%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E+ LRPR L+++ GQ + L++FIEAAK R+E LDHVL GPPGLGKTTLA Sbjct: 20 SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ + L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLSRIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRD+AEV IT +ADAAL Sbjct: 200 RRSASLLNAQIDPNGALEIARRSRGTPRIANRLLRRVRDYAEVKADGQITAAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +GFD +D + L I F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ + ++H G+ P Sbjct: 320 TPRGRVATLLTYRHFGLAAP 339 >gi|303258189|ref|ZP_07344196.1| holliday junction DNA helicase RuvB [Burkholderiales bacterium 1_1_47] gi|331000259|ref|ZP_08323943.1| Holliday junction DNA helicase RuvB [Parasutterella excrementihominis YIT 11859] gi|302858942|gb|EFL82026.1| holliday junction DNA helicase RuvB [Burkholderiales bacterium 1_1_47] gi|329572425|gb|EGG54078.1| Holliday junction DNA helicase RuvB [Parasutterella excrementihominis YIT 11859] Length = 346 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/335 (56%), Positives = 239/335 (71%), Gaps = 1/335 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M D +LS +++ I LRP L+++ GQ L +FI AA+ R EALDHVL Sbjct: 1 MADSNSILSSERKEKEEVIDKALRPTRLKDYAGQDGIREQLDLFITAARNRGEALDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A ELGV R TSGPV+ KAGDLAA+LT+LE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIANELGVKLRQTSGPVLEKAGDLAAMLTSLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPA+EDF+LD+M+GEGP+ARS+KI+L FTL+ ATTR G LT PLQDRFGI + Sbjct: 121 VVEEILYPALEDFKLDIMIGEGPAARSIKIDLPHFTLVGATTRAGSLTKPLQDRFGIRAQ 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y EDL TIV R L + AA EIA RSRGTPRIA RLLRR+RDF+EV H Sbjct: 181 LQYYSPEDLTTIVLRSMHLLNMPADKGAAGEIARRSRGTPRIANRLLRRIRDFSEVRHQG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 ++ +IA AL L +D +G D LD ++L I F GGPVGIE +++ + E D ++D+ Sbjct: 241 QLSEQIAKDALTMLEVDPIGLDSLDCQFLLAIIEKFQGGPVGIENLASAVGEESDTLQDM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 +EPY+I++GF+QRTPRGR+ P A+ H G+D H+ Sbjct: 301 VEPYLIKEGFVQRTPRGRVATPRAYSHFGLDRKHK 335 >gi|253688207|ref|YP_003017397.1| Holliday junction DNA helicase RuvB [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495673|sp|C6DFF2|RUVB_PECCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|251754785|gb|ACT12861.1| Holliday junction DNA helicase RuvB [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 336 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/308 (59%), Positives = 236/308 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L E+ GQ + +++FI+AA+ R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 MRPKLLNEYVGQPQVREQMEIFIQAARKRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 83 MRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY + DL+ IV R A+ GL Sbjct: 143 PAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYNVADLQYIVGRSAQCLGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T E + E+A R+RGTPRIA RLLRRVRDF+EV IT +A AL LA+D GFD Sbjct: 203 DLTPEGSLEVARRARGTPRIANRLLRRVRDFSEVKSEGAITGVVATQALDMLAVDTEGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+ Sbjct: 263 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRMATQ 322 Query: 322 IAWQHLGI 329 A++H G+ Sbjct: 323 HAYRHFGL 330 >gi|239817618|ref|YP_002946528.1| Holliday junction DNA helicase RuvB [Variovorax paradoxus S110] gi|259495682|sp|C5CM03|RUVB_VARPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|239804195|gb|ACS21262.1| Holliday junction DNA helicase RuvB [Variovorax paradoxus S110] Length = 354 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/319 (58%), Positives = 236/319 (73%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QE+A LRP+ L+E+ GQ + L++FI AA+ R EALDHVL GPPGLGKTTL+ + Sbjct: 24 QEEAIERALRPKLLDEYVGQAKVREQLEIFIGAARKRKEALDHVLLFGPPGLGKTTLSHI 83 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 84 IAAELGVNLRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDYQ 143 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV+ Sbjct: 144 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELALIVR 203 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + EIA RSRGTPRIA RLLRRVRD+AEV IT +IA AL+ L Sbjct: 204 RSAGLLKVDTDAAGGFEIARRSRGTPRIANRLLRRVRDYAEVKGNGRITEDIAHKALVML 263 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L + F GGPVG++ ++A + E RD IED+IEPY+IQQG++QRT Sbjct: 264 DVDPQGFDLMDRKLLEAVIHRFDGGPVGLDNVAASIGEERDTIEDVIEPYLIQQGYLQRT 323 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A++HLG+ P Sbjct: 324 PRGRIATLAAYRHLGVTPP 342 >gi|157371016|ref|YP_001479005.1| Holliday junction DNA helicase RuvB [Serratia proteamaculans 568] gi|167012672|sp|A8GFI7|RUVB_SERP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157322780|gb|ABV41877.1| Holliday junction DNA helicase RuvB [Serratia proteamaculans 568] Length = 334 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/308 (59%), Positives = 235/308 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L E+ GQ +++FI+AAK R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY++ DL+ IV R A GL Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVSRSANCLGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +++E A ++A R+RGTPRIA RLLRRVRDFAEV I E+A AL L +D GFD Sbjct: 203 DLSEEGAHQVARRARGTPRIANRLLRRVRDFAEVRANGVINGEVAMQALDMLNVDAEGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E R+ IED+IEP++IQQGFIQRTPRGR+ Sbjct: 263 YMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGFIQRTPRGRMATN 322 Query: 322 IAWQHLGI 329 A++H G+ Sbjct: 323 HAYKHFGM 330 >gi|296132700|ref|YP_003639947.1| Holliday junction DNA helicase RuvB [Thermincola sp. JR] gi|296031278|gb|ADG82046.1| Holliday junction DNA helicase RuvB [Thermincola potens JR] Length = 342 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/326 (56%), Positives = 246/326 (75%), Gaps = 3/326 (0%) Query: 5 EGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 E ++S +ED D SL RPR + E+ GQ + NL+VF+EAAK R+E+LDHVL GP Sbjct: 3 ERIVSTKPREEDMEGDYSL-RPRRISEYIGQQKVKENLRVFVEAAKQRSESLDHVLLFGP 61 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A E+GVN R TSGP I + GDLAA+LTNL D+LFIDEIHRL+ VE Sbjct: 62 PGLGKTTLAHIIANEMGVNIRITSGPAIERPGDLAAILTNLGQGDILFIDEIHRLNRSVE 121 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LYPAMED+ LD+++G+GPSARS++I+L +FTLI ATTR G+LT+PL+DRFG+ +RL F Sbjct: 122 EVLYPAMEDYALDIIIGKGPSARSLRIDLPKFTLIGATTRAGMLTSPLRDRFGVILRLEF 181 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y E+L IV+R A + + + DE A EIA RSRGTPR+A RLL+RVRDFA+V ++ Sbjct: 182 YTAEELMEIVRRAAAILQVTIDDEGAYEIARRSRGTPRVANRLLKRVRDFAQVKANGHVS 241 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 +E+AD AL L +D +G D +D R LT I FGGGPVG++T++A + E D IED++EP Sbjct: 242 KEVADMALNSLDVDFLGLDSIDRRLLTTIIDKFGGGPVGLDTLAASIGEEADTIEDVVEP 301 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328 +++Q GF+ RTPRGR P+A++HLG Sbjct: 302 FLLQLGFLNRTPRGRQATPLAYKHLG 327 >gi|238019732|ref|ZP_04600158.1| hypothetical protein VEIDISOL_01607 [Veillonella dispar ATCC 17748] gi|237863773|gb|EEP65063.1| hypothetical protein VEIDISOL_01607 [Veillonella dispar ATCC 17748] Length = 334 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 190/323 (58%), Positives = 239/323 (73%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+ +ED LRP+ E+ GQ EA NL V+I+AAK R EALDHVL GPPGLG Sbjct: 7 LVGNGEHEEDMWQYSLRPKFFNEYVGQEEAKGNLNVYIQAAKQRGEALDHVLLYGPPGLG 66 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A ELGVNFR TSGP I K+GDLAA+LTNL+D DVLFIDEIHRLS VEE+LY Sbjct: 67 KTTLAGIIANELGVNFRITSGPAIEKSGDLAAILTNLDDHDVLFIDEIHRLSRSVEEVLY 126 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMED+ +D+++G+GPSAR+V+I+L +FTL+ ATTR G L PL+DRFGI RL +Y+ Sbjct: 127 SAMEDYAIDIIIGKGPSARTVRIDLPKFTLVGATTRAGALAAPLRDRFGIINRLEYYKQP 186 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L+ IV R A++ + + A EIA RSRGTPRIA RLL+RVRDFA+V IT+ IA Sbjct: 187 ELEFIVTRAAEILHIGIEPTGASEIARRSRGTPRIANRLLKRVRDFAQVIGDGVITQSIA 246 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL RL IDK G D++D R L I + GGPVGI+TI+A +SE RD IED+ EPY++Q Sbjct: 247 DDALQRLYIDKEGLDRIDRRVLECIIEKYDGGPVGIDTIAAAISEERDTIEDVYEPYLMQ 306 Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329 GF+ RTPRGR+ +A++HLGI Sbjct: 307 LGFLGRTPRGRVATKLAYEHLGI 329 >gi|332527519|ref|ZP_08403571.1| Holliday junction DNA helicase RuvB [Rubrivivax benzoatilyticus JA2] gi|332111926|gb|EGJ11904.1| Holliday junction DNA helicase RuvB [Rubrivivax benzoatilyticus JA2] Length = 354 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/321 (58%), Positives = 236/321 (73%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L+E+ GQ A L++FI AA+ RAEALDHVL GPPGLGKTTLA + Sbjct: 25 NEEAIERALRPKVLDEYVGQARAREQLEIFIHAARGRAEALDHVLLFGPPGLGKTTLAHI 84 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA ELGVN R TSGPV+ K DLAA+LTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 85 VAAELGVNLRQTSGPVLEKPRDLAAILTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQ 144 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+G+GP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L IV Sbjct: 145 IDIMIGDGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNADELTRIVT 204 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L G+ V A E+A RSRGTPRIA RLLRRVRD+A+V I IAD AL L Sbjct: 205 RSAGLLGVEVDPAGALEVARRSRGTPRIANRLLRRVRDYAQVKGDGRIDAPIADKALALL 264 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +GFD +D + L + F GGPVG++ ++A + E IED+IEPY+IQQG++QRT Sbjct: 265 DVDPLGFDVMDRKLLEAVIHRFDGGPVGLDNVAAAIGEESGTIEDVIEPYLIQQGYLQRT 324 Query: 314 PRGRLLMPIAWQHLGIDIPHR 334 PRGR+ A++HLG+ P R Sbjct: 325 PRGRVATLAAYRHLGLSPPQR 345 >gi|254521057|ref|ZP_05133112.1| Holliday junction DNA helicase RuvB [Stenotrophomonas sp. SKA14] gi|219718648|gb|EED37173.1| Holliday junction DNA helicase RuvB [Stenotrophomonas sp. SKA14] Length = 346 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 187/316 (59%), Positives = 239/316 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ++DA + +RP+ L ++ GQV ++++I+AAK R +ALDHVL GPPGLGKTTL+ V Sbjct: 14 EDDAADASIRPKRLADYLGQVPVREQMEIYIQAAKGRGDALDHVLIFGPPGLGKTTLSHV 73 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGV R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS +VEE+LYPAMEDFQ Sbjct: 74 IANELGVALRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 133 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL FY +E+L IV+ Sbjct: 134 IDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLEFYSVEELTRIVR 193 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + G+ T + A EIA R+RGTPRIA RLLRRVRD+A+V I +A AA+ L Sbjct: 194 RSASILGIDCTADGAGEIARRARGTPRIANRLLRRVRDYAQVKAGGHIDEAVAQAAMQML 253 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD+LD R L + F GGPVGIE+++A LSE R +ED++EPY+IQQGF+ RT Sbjct: 254 KVDPEGFDELDRRLLKTMVDYFDGGPVGIESLAAALSEERGTLEDVVEPYLIQQGFLVRT 313 Query: 314 PRGRLLMPIAWQHLGI 329 RGR+ A++H+G+ Sbjct: 314 ARGRMATHKAYRHMGL 329 >gi|56460193|ref|YP_155474.1| Holliday junction DNA helicase RuvB [Idiomarina loihiensis L2TR] gi|81821735|sp|Q5QYU5|RUVB_IDILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|56179203|gb|AAV81925.1| Holliday junction resolvasome, helicase subunit [Idiomarina loihiensis L2TR] Length = 339 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/324 (58%), Positives = 239/324 (73%), Gaps = 1/324 (0%) Query: 7 LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L+ V ED + +RP+TL ++TGQ + +FIEAA+ R EALDH+L GPPGL Sbjct: 12 LIEPEVQGEDEAVDRAIRPKTLADYTGQKHVVEQMGIFIEAARKRQEALDHLLIFGPPGL 71 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA +VA EL V+ ++TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEIL Sbjct: 72 GKTTLANIVANELDVSIKTTSGPVLEKAGDLAALLTNLEAHDVLFIDEIHRLSPVVEEIL 131 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY++ Sbjct: 132 YPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRDRFGIVQRLEFYDV 191 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L IV R A + + D A EIA RSRGTPRIA RLLRRVRD+AEV + Sbjct: 192 NELTDIVGRSAHFMNVRMLDGGAREIARRSRGTPRIANRLLRRVRDYAEVRGNGDVDEVT 251 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A+AAL + +D+ GFD +D + L I F GGPVG++ ++A + E +D IED++EPY+I Sbjct: 252 ANAALTMVDVDQAGFDYMDRKLLLAIMEKFMGGPVGLDNLAAAIGEEKDTIEDVLEPYLI 311 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 QQGF+QRTPRGR+ P A+QH G+ Sbjct: 312 QQGFLQRTPRGRIATPRAYQHFGL 335 >gi|254360615|ref|ZP_04976764.1| crossover junction endonuclease RuvB [Mannheimia haemolytica PHL213] gi|153091155|gb|EDN73160.1| crossover junction endonuclease RuvB [Mannheimia haemolytica PHL213] Length = 334 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/330 (56%), Positives = 246/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S + +E+ I +RP+ L ++ GQ +++FI+AAK R EALDH+L Sbjct: 1 MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVHDQMEIFIKAAKLREEALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL IV+R A L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V + Sbjct: 181 LEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT +IA AL L +D GFD +D++ L I F GGPVG++ ++A + E RD IED+ Sbjct: 241 IITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGF+QRTPRGR+ + HLGI Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGI 330 >gi|262171191|ref|ZP_06038869.1| holliday junction DNA helicase RuvB [Vibrio mimicus MB-451] gi|261892267|gb|EEY38253.1| holliday junction DNA helicase RuvB [Vibrio mimicus MB-451] Length = 334 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/309 (58%), Positives = 235/309 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 25 IRPKKLADYQGQDHVRDQMEIFIKAAQQRQEALDHLLIFGPPGLGKTTLANIVANEMGVN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 85 IRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y + DL+ IVQR A GL Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYNVADLQNIVQRSAHCLGL 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ + A E+A R+RGTPRIA RLLRRVRD+AEV I + AD AL L +D GFD Sbjct: 205 SMDSDGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAKTADKALDMLDVDHQGFD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E +D IED++EP++IQQG++QRTPRGR+ Sbjct: 265 YMDRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGRIATD 324 Query: 322 IAWQHLGID 330 A+ H G++ Sbjct: 325 RAYLHFGLE 333 >gi|164687537|ref|ZP_02211565.1| hypothetical protein CLOBAR_01178 [Clostridium bartlettii DSM 16795] gi|164603311|gb|EDQ96776.1| hypothetical protein CLOBAR_01178 [Clostridium bartlettii DSM 16795] Length = 338 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/333 (54%), Positives = 244/333 (73%), Gaps = 1/333 (0%) Query: 3 DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 D L+S ++ ED D + LRP+ L ++ GQ + L++FIEAAK+R E LDHVL G Sbjct: 6 DENRLISSSMKVEDNDTEVSLRPKNLSDYLGQEKVKEQLEIFIEAAKSRNEPLDHVLLYG 65 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+GVN R TSGP I +AGDLAALLTNLE+ DVLFIDEIHR++ V Sbjct: 66 PPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAALLTNLEENDVLFIDEIHRINRSV 125 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMED+ +D+++G+GPSARS++++L +FTLI ATT+ G+LTNPL+DRFG+ +L+ Sbjct: 126 EEVLYPAMEDYCIDIIIGKGPSARSIRLDLPKFTLIGATTKAGMLTNPLRDRFGVICKLD 185 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y +++L I R A L + A EIA RSRGTPRIA RLL+RVRD+A+V I Sbjct: 186 YYTVDELAQISMRSANLLDADINLNGATEIARRSRGTPRIANRLLKRVRDYAQVKADGNI 245 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T E+A AL L +D +G D +D + L I FGGGPVG++T++A + E R+ IED+ E Sbjct: 246 TDEVASNALELLGVDSLGLDDVDEKLLLTIIHKFGGGPVGLDTLAASIGEDRNTIEDVYE 305 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 PY++Q GFI R PRGR+ MP A++HL I+ P + Sbjct: 306 PYLLQLGFINRGPRGRIAMPKAYEHLNIEYPKK 338 >gi|145634689|ref|ZP_01790398.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittAA] gi|145268234|gb|EDK08229.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittAA] Length = 335 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/315 (57%), Positives = 236/315 (74%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ + + +FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 16 EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QL Sbjct: 76 ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY +EDL +IV R Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + +AA E+A RSRGTPRIA RLLRRVRD+A+V + I+ E+A AL L Sbjct: 196 SADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGVISVEVAKQALSMLD 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD LD + L+ + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315 Query: 315 RGRLLMPIAWQHLGI 329 RGR+ ++H G+ Sbjct: 316 RGRIATSQTYRHFGL 330 >gi|329120083|ref|ZP_08248753.1| crossover junction ATP-dependent DNA helicase RuvB [Neisseria bacilliformis ATCC BAA-1200] gi|327463614|gb|EGF09932.1| crossover junction ATP-dependent DNA helicase RuvB [Neisseria bacilliformis ATCC BAA-1200] Length = 349 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/319 (61%), Positives = 237/319 (74%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 SQE+ LRP+ L ++ GQ +A L +FI AAK R EALDH L GPPGLGKTTLA Sbjct: 30 SQEEQLERALRPKFLADYIGQHKAKEQLAIFIAAAKKRGEALDHTLLFGPPGLGKTTLAH 89 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+ELGVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 90 IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 149 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLD+M+GEGP+ARSVKI+L FTL+ ATTR G+LTNPL+DRFGI RL FY +DL TIV Sbjct: 150 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYGHDDLATIV 209 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L L + E A EIA RSRGTPRIA RLLRRVRD+AEV + I + ADAAL Sbjct: 210 SRSAGLLQLDLAAEGALEIARRSRGTPRIANRLLRRVRDYAEVKGSGRIAADTADAALTL 269 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D+ G D +D ++L + FGGGPVG++ I+A + E D IED+IEPY+IQQGF+QR Sbjct: 270 LDVDQAGLDMMDRKFLEAVLHKFGGGPVGLDNIAAAIGESADTIEDVIEPYLIQQGFLQR 329 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR I H G+ + Sbjct: 330 TPRGRTATEICRLHFGLPV 348 >gi|255658188|ref|ZP_05403597.1| holliday junction DNA helicase RuvB [Mitsuokella multacida DSM 20544] gi|260849496|gb|EEX69503.1| holliday junction DNA helicase RuvB [Mitsuokella multacida DSM 20544] Length = 339 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/313 (58%), Positives = 236/313 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E+ GQ + +NL +FI+AA +R EALDHVL GPPGLGKTTLA ++A ELGVN Sbjct: 27 LRPRKLNEYIGQEKVKANLSIFIQAALSRGEALDHVLLYGPPGLGKTTLAGIIANELGVN 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGP I ++GDLAALLTNL++ DVLFIDEIHRLS VEE+LY AMEDF LD+++G+G Sbjct: 87 FRQTSGPAIERSGDLAALLTNLQEHDVLFIDEIHRLSHSVEEVLYSAMEDFALDIIIGKG 146 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++++++ FTLI ATT+ G L PL+DRFG+ RL +Y + L I++R A++ + Sbjct: 147 PSARSIRLDIAPFTLIGATTKAGALAAPLRDRFGVISRLEYYTPDALVHIIKRAAEILDI 206 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ DE A EIA RSRGTPR+A RLL+RVRD A++ + TIT EIAD AL L +DK G D Sbjct: 207 AIEDEGALEIARRSRGTPRVANRLLKRVRDVAQIEGSGTITNEIADKALRMLEVDKAGLD 266 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG++T++A +SE RD IED+ EPY+IQ GFI RTPRGR++ Sbjct: 267 HTDRRMLRTMIEKFAGGPVGLDTLAAAISEARDTIEDVYEPYLIQLGFINRTPRGRIVTE 326 Query: 322 IAWQHLGIDIPHR 334 ++HLGI P + Sbjct: 327 AGYRHLGIPYPEK 339 >gi|54297489|ref|YP_123858.1| Holliday junction DNA helicase RuvB [Legionella pneumophila str. Paris] gi|59800220|sp|Q5X4Y6|RUVB_LEGPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|172047900|sp|A5IC73|RUVB_LEGPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|53751274|emb|CAH12685.1| hypothetical protein lpp1534 [Legionella pneumophila str. Paris] Length = 336 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/320 (56%), Positives = 238/320 (74%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+++ EDA +RP +L E+ GQ S +++FI AA+ R + LDHVL GPPGLGKT Sbjct: 10 SQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKT 69 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA ++A E+GVN R TSGPVI +AGD+AA+LTNL+ DVLFIDEIHRLS ++EEILYPA Sbjct: 70 TLANIIAHEMGVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPA 129 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED++LD+M+GEGP+ARS+K+ L FTLI ATTR GLLT+PL+DRFGI RL +Y ++ L Sbjct: 130 MEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSL 189 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 IV R A L G+ E A EIA+RSRGTPRIA RLLRRVRD++EV IT ++A Sbjct: 190 TKIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQ 249 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L +D+ GFD +D + L + +F GGPVGI++I+A + E + IED++EP++IQQG Sbjct: 250 ALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQG 309 Query: 309 FIQRTPRGRLLMPIAWQHLG 328 F+ RTPRGR+ A+QH G Sbjct: 310 FLMRTPRGRIATSKAYQHFG 329 >gi|190575567|ref|YP_001973412.1| Holliday junction DNA helicase RuvB [Stenotrophomonas maltophilia K279a] gi|229484900|sp|B2FRN4|RUVB_STRMK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|190013489|emb|CAQ47124.1| putative Holliday junction DNA helicase [Stenotrophomonas maltophilia K279a] Length = 346 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 187/316 (59%), Positives = 239/316 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ++DA + +RP+ L ++ GQV ++++I+AAK R +ALDHVL GPPGLGKTTL+ V Sbjct: 14 EDDAADASIRPKRLADYLGQVPVREQMEIYIQAAKGRGDALDHVLIFGPPGLGKTTLSHV 73 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGV R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS +VEE+LYPAMEDFQ Sbjct: 74 IANELGVALRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 133 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL FY +E+L IV+ Sbjct: 134 IDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLEFYSVEELTRIVR 193 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + G+ T + A EIA R+RGTPRIA RLLRRVRD+A+V I +A AA+ L Sbjct: 194 RSASILGIDCTADGAGEIARRARGTPRIANRLLRRVRDYAQVKAGGHIDEPVAQAAMKML 253 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD+LD R L + F GGPVGIE+++A LSE R +ED++EPY+IQQGF+ RT Sbjct: 254 KVDPEGFDELDRRLLKTMVDYFDGGPVGIESLAAALSEERGTLEDVVEPYLIQQGFLVRT 313 Query: 314 PRGRLLMPIAWQHLGI 329 RGR+ A++H+G+ Sbjct: 314 ARGRMATHKAYRHMGL 329 >gi|104783072|ref|YP_609570.1| Holliday junction DNA helicase RuvB [Pseudomonas entomophila L48] gi|123255381|sp|Q1I6E9|RUVB_PSEE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|95112059|emb|CAK16786.1| Holliday junction helicase, subunit B [Pseudomonas entomophila L48] Length = 348 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/321 (57%), Positives = 240/321 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ +RP L+E+ GQ + +FI+AA+ R E+LDH L GPPGLGKTTLA + Sbjct: 15 REEVQDRAIRPLRLDEYIGQPVVREQMALFIQAARGRNESLDHTLIFGPPGLGKTTLANI 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A+E+GV+ +STSGP++ + GDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMEDFQ Sbjct: 75 IAQEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY +DL TIV Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSNKDLATIVS 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + GL + D+ A EIA R+RGTPRIA RLLRRVRDFAEV IT+ +AD AL L Sbjct: 195 RSAGILGLPMDDKGAFEIARRARGTPRIANRLLRRVRDFAEVRGKGEITKAVADMALNLL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D+ GFD D R L + F GGPVG++ I+A + E R IED++EPY+IQQG+I RT Sbjct: 255 DVDERGFDHSDRRLLLTMIEKFDGGPVGLDNIAAAIGEERHTIEDVLEPYLIQQGYIMRT 314 Query: 314 PRGRLLMPIAWQHLGIDIPHR 334 PRGR++ A+ H G++IP R Sbjct: 315 PRGRVVTRHAYLHFGLNIPGR 335 >gi|60407080|sp|Q5ZV64|RUVB_LEGPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB Length = 336 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/320 (56%), Positives = 238/320 (74%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+++ EDA +RP +L E+ GQ S +++FI AA+ R + LDHVL GPPGLGKT Sbjct: 10 SQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKT 69 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA ++A E+GVN R TSGPVI +AGD+AA+LTNL+ DVLFIDEIHRLS ++EEILYPA Sbjct: 70 TLANIIAHEMGVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPA 129 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED++LD+M+GEGP+ARS+K+ L FTLI ATTR GLLT+PL+DRFGI RL +Y ++ L Sbjct: 130 MEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSL 189 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 IV R A L G+ E A EIA+RSRGTPRIA RLLRRVRD++EV IT ++A Sbjct: 190 TQIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQ 249 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L +D+ GFD +D + L + +F GGPVGI++I+A + E + IED++EP++IQQG Sbjct: 250 ALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQG 309 Query: 309 FIQRTPRGRLLMPIAWQHLG 328 F+ RTPRGR+ A+QH G Sbjct: 310 FLMRTPRGRIATSKAYQHFG 329 >gi|52841806|ref|YP_095605.1| Holliday junction DNA helicase RuvB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628917|gb|AAU27658.1| Holliday junction DNA helicase RuvB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 343 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/320 (56%), Positives = 238/320 (74%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+++ EDA +RP +L E+ GQ S +++FI AA+ R + LDHVL GPPGLGKT Sbjct: 17 SQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKT 76 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA ++A E+GVN R TSGPVI +AGD+AA+LTNL+ DVLFIDEIHRLS ++EEILYPA Sbjct: 77 TLANIIAHEMGVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPA 136 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED++LD+M+GEGP+ARS+K+ L FTLI ATTR GLLT+PL+DRFGI RL +Y ++ L Sbjct: 137 MEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSL 196 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 IV R A L G+ E A EIA+RSRGTPRIA RLLRRVRD++EV IT ++A Sbjct: 197 TQIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQ 256 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L +D+ GFD +D + L + +F GGPVGI++I+A + E + IED++EP++IQQG Sbjct: 257 ALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQG 316 Query: 309 FIQRTPRGRLLMPIAWQHLG 328 F+ RTPRGR+ A+QH G Sbjct: 317 FLMRTPRGRIATSKAYQHFG 336 >gi|256823070|ref|YP_003147033.1| Holliday junction DNA helicase RuvB [Kangiella koreensis DSM 16069] gi|256796609|gb|ACV27265.1| Holliday junction DNA helicase RuvB [Kangiella koreensis DSM 16069] Length = 339 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/308 (59%), Positives = 236/308 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL E+ GQ + +++F+ AAK R EALDHVL GPPGLGKTTL+ ++A E+GV Sbjct: 23 IRPTTLGEYVGQEKVREQMEIFLGAAKKRQEALDHVLIFGPPGLGKTTLSNIIANEMGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QLD+M+GEG Sbjct: 83 IKHTSGPVLEKAGDLAAMLTNLEPNDVLFIDEIHRLSPHIEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTL+ ATTR GLLT+PL+DRFGI RL FY ++DL IV R A++ L Sbjct: 143 PAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNLKDLTHIVMRSARILDL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A EIA RSRGTPRIA RLLRRVRD+AE+ IT++I+D AL L +D GFD Sbjct: 203 PIEEKGALEIARRSRGTPRIANRLLRRVRDYAEIKSDGVITQDISDRALDMLDVDHKGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++T++A + E RD I++++EP++IQQGFIQRTPRGR+ Sbjct: 263 MMDRKLLLTIIEKFAGGPVGLDTLAAAIGEERDTIDEVLEPFLIQQGFIQRTPRGRIATK 322 Query: 322 IAWQHLGI 329 +A+QH I Sbjct: 323 LAYQHFEI 330 >gi|33598087|ref|NP_885730.1| Holliday junction DNA helicase B [Bordetella parapertussis 12822] gi|44888434|sp|Q7W4T6|RUVB_BORPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|33566645|emb|CAE38855.1| holliday junction DNA helicase [Bordetella parapertussis] Length = 357 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/311 (58%), Positives = 230/311 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE+ GQ A L++FI AA+ R EALDHVL GPPGLGKTTLA ++A E+GV Sbjct: 34 LRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG Sbjct: 94 LRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L IV R A L Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDELARIVTRSASLLNA 213 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T + A E+A RSRGTPRIA RLLRRVRD+A+V I ++ A AL L +D G D Sbjct: 214 DITADGAHEVARRSRGTPRIANRLLRRVRDYAQVKAHGVIDQDAAGRALAMLDVDPQGLD 273 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR Sbjct: 274 VMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRTATL 333 Query: 322 IAWQHLGIDIP 332 W+HLG++ P Sbjct: 334 TTWRHLGLNPP 344 >gi|226945718|ref|YP_002800791.1| Holliday junction DNA helicase RuvB [Azotobacter vinelandii DJ] gi|259495660|sp|C1DRF8|RUVB_AZOVD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226720645|gb|ACO79816.1| holliday junction DNA helicase RuvB [Azotobacter vinelandii DJ] Length = 352 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/313 (59%), Positives = 237/313 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L E+ GQ +++FI+AA+ R EALDH L GPPGLGKTTLA ++A+E+GV+ Sbjct: 23 IRPLRLAEYIGQPVVREQMELFIQAARGRREALDHTLIFGPPGLGKTTLANIIAQEMGVS 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAALLTNLE DVLF+DEIHRLS +VEE+LYPAMEDFQLD+M+GEG Sbjct: 83 LKSTSGPVLERPGDLAALLTNLESGDVLFVDEIHRLSPVVEEVLYPAMEDFQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY + DL TIV R A + GL Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSVADLTTIVGRSAAILGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 E A EIA R+RGTPRIA RLLRRVRDFA+V ITR+IAD AL L +D+ G D Sbjct: 203 PTDAEGAFEIARRARGTPRIANRLLRRVRDFAQVRGEGRITRQIADLALNLLDVDEHGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A +SE R IED++EPY+IQQG++ RTPRGR++ Sbjct: 263 HQDRRLLLTLIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYMMRTPRGRVVTR 322 Query: 322 IAWQHLGIDIPHR 334 A+ H G+++P R Sbjct: 323 HAYLHFGLNLPAR 335 >gi|261493368|ref|ZP_05989894.1| crossover junction endonuclease RuvB [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496634|ref|ZP_05993014.1| crossover junction endonuclease RuvB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307837|gb|EEY09160.1| crossover junction endonuclease RuvB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311012|gb|EEY12189.1| crossover junction endonuclease RuvB [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 334 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/330 (56%), Positives = 246/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S + +E+ I +RP+ L ++ GQ +++FI+AAK R EALDH+L Sbjct: 1 MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVRDQMEIFIKAAKLREEALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL IV+R A L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V + Sbjct: 181 LEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT +IA AL L +D GFD +D++ L I F GGPVG++ ++A + E RD IED+ Sbjct: 241 IITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGF+QRTPRGR+ + HLGI Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGI 330 >gi|238898993|ref|YP_002924675.1| Holliday junction helicase, subunit B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259495670|sp|C4K7I4|RUVB_HAMD5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|229466753|gb|ACQ68527.1| Holliday junction helicase, subunit B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 333 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 190/329 (57%), Positives = 242/329 (73%), Gaps = 2/329 (0%) Query: 1 MMDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M++ + L+S +V E+ + +RP+ L+E+ GQ +++FI+AAK R +ALDH+L Sbjct: 1 MIEIDRLVSTDVLNENEALVDRAIRPKRLDEYVGQSHVRDQMQIFIQAAKQRGDALDHLL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLT+LE RD LFIDEIHRLS Sbjct: 61 IFGPPGLGKTTLANIVAHEMGVNLRTTSGPVLEKAGDLAALLTHLEPRDALFIDEIHRLS 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEEILYPAMED+QLD+M+GEGP ARS+K++L FTLI ATTR G LT+PL+DRFGI Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPGARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL FY + DL+ IV R A+ L +T A ++A+RSRGTPRI RLLRRVRDFAEV Sbjct: 181 RLEFYSVPDLEHIVSRSARCLQLPLTKNGAHQLALRSRGTPRIINRLLRRVRDFAEVKGE 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 I EIA AL L +DK G D +D + L I F GGPVG++ ++A + E R+ IED Sbjct: 241 GKINTEIAIKALEMLNVDKEGLDYMDSKLLLAIIEKFQGGPVGLDNLAAAIGEERETIED 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHL 327 ++EPY+IQQGFIQRTPRGR+ A+QH Sbjct: 301 VLEPYLIQQGFIQRTPRGRIATQHAYQHF 329 >gi|308095082|ref|ZP_05903319.2| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus Peru-466] gi|308087266|gb|EFO36961.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus Peru-466] Length = 305 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/304 (59%), Positives = 235/304 (77%) Query: 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 + ++ GQ +++FI+AA+ R+EALDH+L GPPGLGKTTLA +VA E+ VN R+TS Sbjct: 1 MADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANEMEVNIRTTS 60 Query: 87 GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 GPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEGP+ARS Sbjct: 61 GPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARS 120 Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 +KI+L FTLI ATTR G LT+PL+DRFGI RL +Y+++DL+ IVQR A GL++ E Sbjct: 121 IKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVQDLQNIVQRSADCLGLSMEPE 180 Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266 A E+A R+RGTPRIA RLLRRVRD+AEV I ++AD AL L +D GFD +D + Sbjct: 181 GALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLDVDAQGFDYMDRK 240 Query: 267 YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQH 326 L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTPRGR+ A+ H Sbjct: 241 LLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGRIATDRAYLH 300 Query: 327 LGID 330 GI+ Sbjct: 301 FGIE 304 >gi|304317015|ref|YP_003852160.1| Holliday junction DNA helicase RuvB [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778517|gb|ADL69076.1| Holliday junction DNA helicase RuvB [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 331 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/333 (54%), Positives = 242/333 (72%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR +L++N + EDA LRP+ L E+ GQ + LK++IEAAK R E LDHVL Sbjct: 1 MEDR--ILTQNFTPEDASEYSLRPKRLSEYIGQTKIKEELKIYIEAAKMRNEPLDHVLLF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA +++ E+GV R TSGP I +AGDLAA+LTNL++ D+LFIDEIHRL+ Sbjct: 59 GPPGLGKTTLANIISNEMGVGIRITSGPAIERAGDLAAILTNLQENDILFIDEIHRLNRS 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDF+LD+++G+GPSARS+++NL FTLI ATTR GL+T+PL+DRFG+ +RL Sbjct: 119 VEEILYPAMEDFELDIIIGKGPSARSLRLNLPHFTLIGATTRAGLMTSPLRDRFGVIMRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY + DL I++R + + + + DEAA E+ RSRGTPRIA RLL+RVRDFA+V Sbjct: 179 EFYSVNDLSEIIKRSSAILNIGINDEAAYELGRRSRGTPRIANRLLKRVRDFAQVKGNGF 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I E A AL L +D MG + +D + L I F GGPVGI+TI+A + E + IED+ Sbjct: 239 IDFETAKDALDMLGVDDMGLEHIDRKMLKSIIEKFSGGPVGIDTIAASIGEESETIEDVY 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY++Q GF+ RTPRGR+ +A+++L IP Sbjct: 299 EPYLMQIGFLNRTPRGRIATKLAYEYLNYSIPE 331 >gi|291288792|ref|YP_003505608.1| Holliday junction DNA helicase RuvB [Denitrovibrio acetiphilus DSM 12809] gi|290885952|gb|ADD69652.1| Holliday junction DNA helicase RuvB [Denitrovibrio acetiphilus DSM 12809] Length = 341 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/330 (56%), Positives = 248/330 (75%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 + + + + ED S +RP+ +++ GQ + NLKVF++AAK R EALDH LF GPPG Sbjct: 2 DNIFTDDKQPEDFQNSSIRPQGFDDYVGQKKVKENLKVFVQAAKQRGEALDHCLFHGPPG 61 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA +++ ELGVN STSGPVI KAGDLAA+LTN+++ DVLFIDEIHRL VEEI Sbjct: 62 LGKTTLANIISHELGVNINSTSGPVIDKAGDLAAILTNIQEGDVLFIDEIHRLHSNVEEI 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF+LD+++G+GP+AR+VKI+L FTLI ATTR GLLT+PL+DRFG+ +RL FY+ Sbjct: 122 LYPAMEDFKLDILIGQGPAARTVKIDLPPFTLIGATTRAGLLTSPLRDRFGMIMRLEFYD 181 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +++LK I+ RGA + + D AA EIA RSRGTPRIA R+LRRVRDFA++ + IT + Sbjct: 182 VDELKHILLRGAGILEADIEDAAAEEIAGRSRGTPRIAHRILRRVRDFADILNNGQITLD 241 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A +L RL ID G D D L I + GGPVG++T++A +SE RD IED+IEPY+ Sbjct: 242 MARESLRRLEIDTEGLDASDRNLLLSIIEKYEGGPVGVDTLAATMSEERDTIEDVIEPYL 301 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 I +GF+++TPRGR+ A++HL + +P R Sbjct: 302 IYRGFVKKTPRGRMATAHAYEHLKMAVPGR 331 >gi|323706514|ref|ZP_08118073.1| Holliday junction DNA helicase RuvB [Thermoanaerobacterium xylanolyticum LX-11] gi|323534144|gb|EGB23936.1| Holliday junction DNA helicase RuvB [Thermoanaerobacterium xylanolyticum LX-11] Length = 331 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/329 (54%), Positives = 243/329 (73%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E +L++N + EDA LRP+ L E+ GQ++ LK++IEAAK R+E LDHVL GPPG Sbjct: 3 ERILTQNFTPEDASEYSLRPKRLSEYIGQMKIKEELKIYIEAAKMRSEPLDHVLLFGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA +++ E+GV R TSGP I +AGDLAA+LTNL++ D+LFIDEIHRL+ VEEI Sbjct: 63 LGKTTLANIISNEMGVGIRITSGPAIERAGDLAAILTNLQENDILFIDEIHRLNRSVEEI 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF+LD+++G+GPSARS++++L FTLI ATTR GL+T+PL+DRFG+ +RL FY Sbjct: 123 LYPAMEDFELDIIIGKGPSARSLRLDLPHFTLIGATTRAGLMTSPLRDRFGVIMRLEFYS 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+L I++R + + + + DEAA E+ RSRGTPRIA RLL+RVRDFA+V I Sbjct: 183 VEELSEIIKRSSAILNIGINDEAAYELGRRSRGTPRIANRLLKRVRDFAQVKGNGFIDFH 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 IA AL L +D MG + +D + L I F GGPVGI+TI+A + E D IED+ EPY+ Sbjct: 243 IAKDALDMLGVDDMGLEHIDRKMLKSIIEKFSGGPVGIDTIAASIGEESDTIEDVYEPYL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +Q GF+ RTPRGR+ +A+++L +P Sbjct: 303 MQIGFLNRTPRGRIATKLAYEYLNYSLPE 331 >gi|54294380|ref|YP_126795.1| Holliday junction DNA helicase B [Legionella pneumophila str. Lens] gi|59800219|sp|Q5WWK4|RUVB_LEGPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|53754212|emb|CAH15689.1| hypothetical protein lpl1449 [Legionella pneumophila str. Lens] Length = 336 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/320 (56%), Positives = 238/320 (74%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+++ EDA +RP +L E+ GQ S +++FI AA+ R + LDHVL GPPGLGKT Sbjct: 10 SQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKT 69 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA ++A E+GVN R TSGPVI +AGD+AA+LTNL+ DVLFIDEIHRLS ++EEILYPA Sbjct: 70 TLANIIAHEMGVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPA 129 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED++LD+M+GEGP+ARS+K+ L FTLI ATTR GLLT+PL+DRFGI RL +Y ++ L Sbjct: 130 MEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSL 189 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 IV R A L G+ E A E+A+RSRGTPRIA RLLRRVRD++EV IT ++A Sbjct: 190 TQIVARSAHLLGVPTKPEGAREVALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQ 249 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L +D+ GFD +D + L + +F GGPVGI++I+A + E + IED++EP++IQQG Sbjct: 250 ALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQG 309 Query: 309 FIQRTPRGRLLMPIAWQHLG 328 F+ RTPRGR+ A+QH G Sbjct: 310 FLMRTPRGRIATSKAYQHFG 329 >gi|229846400|ref|ZP_04466508.1| Holliday junction DNA helicase B [Haemophilus influenzae 7P49H1] gi|229810493|gb|EEP46211.1| Holliday junction DNA helicase B [Haemophilus influenzae 7P49H1] gi|309972528|gb|ADO95729.1| Holliday junction resolvasome, ATPase subunit [Haemophilus influenzae R2846] Length = 335 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/315 (57%), Positives = 236/315 (74%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ + + +FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 16 EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QL Sbjct: 76 ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY +EDL +IV R Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + +AA E+A RSRGTPRIA RLLRRVRD+A+V + I+ E+A AL L Sbjct: 196 SAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGVISVEVAKQALSMLD 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD LD + L+ + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315 Query: 315 RGRLLMPIAWQHLGI 329 RGR+ ++H G+ Sbjct: 316 RGRIATSQTYRHFGL 330 >gi|121603425|ref|YP_980754.1| Holliday junction DNA helicase RuvB [Polaromonas naphthalenivorans CJ2] gi|171769286|sp|A1VJK5|RUVB_POLNA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|120592394|gb|ABM35833.1| Holliday junction DNA helicase RuvB [Polaromonas naphthalenivorans CJ2] Length = 356 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/319 (58%), Positives = 237/319 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+A LRP+ +++ GQ +A L++FI AA R EALDHVL GPPGLGKTTL+ + Sbjct: 28 KEEAIERALRPKLFDDYVGQTKAREQLEIFIGAANKRQEALDHVLLFGPPGLGKTTLSHI 87 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGVN RSTSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 88 IAHELGVNMRSTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQ 147 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV+ Sbjct: 148 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELARIVK 207 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + E EIA RSRGTPRIA RLLRRVRD+A+V TIT +IA+ AL L Sbjct: 208 RSAGLLNAPMDAEGGFEIARRSRGTPRIANRLLRRVRDYADVKGNGTITLDIANRALAML 267 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D ++L + F GGPVG++ I+A + E IED+IEPY+IQQGF+QRT Sbjct: 268 DVDPQGFDLMDRKFLEAVILRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGFLQRT 327 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A++HLG+ P Sbjct: 328 PRGRIATLAAYRHLGVAPP 346 >gi|218905615|ref|YP_002453449.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820] gi|218536299|gb|ACK88697.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820] Length = 541 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 189/333 (56%), Positives = 248/333 (74%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 +MD E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL Sbjct: 208 IMD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLL 266 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+ DVLFIDEIHRL Sbjct: 267 YGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHR 326 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ R Sbjct: 327 SIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSR 386 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V Sbjct: 387 LEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNG 446 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 T+T EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ Sbjct: 447 TVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDV 506 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 507 YEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMP 539 >gi|33594304|ref|NP_881948.1| Holliday junction DNA helicase B [Bordetella pertussis Tohama I] gi|44888430|sp|Q7VTT6|RUVB_BORPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|33564379|emb|CAE43684.1| holliday junction DNA helicase [Bordetella pertussis Tohama I] gi|332383715|gb|AEE68562.1| Holliday junction DNA helicase RuvB [Bordetella pertussis CS] Length = 357 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/311 (58%), Positives = 229/311 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE+ GQ A L++FI AA+ R EALDHVL GPPGLGKTTLA ++A E+GV Sbjct: 34 LRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG Sbjct: 94 LRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L IV R A L Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDELARIVTRSASLLNA 213 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T + A E+A RSRGTPRIA RLLRRVRD+A+V I ++ A AL L +D G D Sbjct: 214 DITADGAHEVARRSRGTPRIANRLLRRVRDYAQVKSHGVIDQDAAGRALAMLDVDPQGLD 273 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR Sbjct: 274 VMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRTATL 333 Query: 322 IAWQHLGIDIP 332 W+HLG+ P Sbjct: 334 TTWRHLGLTPP 344 >gi|125972706|ref|YP_001036616.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum ATCC 27405] gi|256004865|ref|ZP_05429839.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM 2360] gi|281416894|ref|ZP_06247914.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum JW20] gi|166231487|sp|A3DBU4|RUVB_CLOTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|125712931|gb|ABN51423.1| Holliday junction DNA helicase subunit RuvB [Clostridium thermocellum ATCC 27405] gi|255991175|gb|EEU01283.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM 2360] gi|281408296|gb|EFB38554.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum JW20] gi|316941058|gb|ADU75092.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM 1313] Length = 330 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 243/329 (73%), Gaps = 2/329 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+ +S+ED D LRPR E+ GQ + NL VFIEAAK R EALDHVL Sbjct: 1 MEDR--LVGCRLSEEDVDEVSLRPRKFGEYIGQTKVKENLMVFIEAAKKRNEALDHVLLY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A ELGVN R TSGP I K GDLAA+LTNL + DVLFIDEIHRL+ Sbjct: 59 GPPGLGKTTLAGIIASELGVNLRITSGPAIEKPGDLAAILTNLGNFDVLFIDEIHRLNRS 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT+PL+DRFG+ +L Sbjct: 119 VEEILYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTSPLRDRFGVINKL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 Y +E+L IV+R A++ + + DEAA EIA R+RGTPR+A R+L+R+RDFA+V Sbjct: 179 ELYSVEELGQIVKRSARILNVGIEDEAAEEIARRARGTPRVANRILKRIRDFAQVKSDGF 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT+EIA L L +D++G D +D L I FGGGPVG++T++A + E D IED+ Sbjct: 239 ITKEIARTGLEALEVDEIGLDAVDRNLLMSIIEKFGGGPVGLDTLAATIGEEPDTIEDVY 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GFI +TPRGR+ +A++H G+ Sbjct: 299 EPYLLQLGFINKTPRGRMATKLAYEHFGL 327 >gi|88800181|ref|ZP_01115749.1| Holliday junction DNA helicase RuvB [Reinekea sp. MED297] gi|88777027|gb|EAR08234.1| Holliday junction DNA helicase RuvB [Reinekea sp. MED297] Length = 338 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/308 (58%), Positives = 232/308 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL E+ GQ +++F+ AA+ R E LDH L GPPGLGKTTLA ++A E+GVN Sbjct: 24 IRPDTLAEYIGQPVVKEKMEIFLGAARKREEPLDHTLIFGPPGLGKTTLANIIANEMGVN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRL+ VEE+LYPAMED+QLD+M+GEG Sbjct: 84 IKTTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLAPNVEEVLYPAMEDYQLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K+ L FTL+ ATTR GLLT+PL+DRFGI RL FY DL IV+R ++ + Sbjct: 144 PAARSIKLELPPFTLVGATTRAGLLTSPLRDRFGIVERLEFYSTADLAEIVERSSRKLSI 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A EIA RSRGTPRIA RLLRRVRD+A+V H +T +ADAAL L +D+ GFD Sbjct: 204 EIDPEGAAEIARRSRGTPRIANRLLRRVRDYADVKHDGQVTAAVADAALNMLHVDRAGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R L + FGGGP G+E I+A +SE RD +ED++EPY+IQQG++ RTPRGR++ Sbjct: 264 HLDRRVLLALIEKFGGGPAGVENIAAAISEERDTLEDVVEPYLIQQGYLIRTPRGRIVTD 323 Query: 322 IAWQHLGI 329 +A+ H + Sbjct: 324 LAYLHFDL 331 >gi|300870481|ref|YP_003785352.1| Holliday junction DNA helicase RuvB [Brachyspira pilosicoli 95/1000] gi|300688180|gb|ADK30851.1| holliday junction DNA helicase, RuvB [Brachyspira pilosicoli 95/1000] Length = 344 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/333 (54%), Positives = 238/333 (71%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD+E + + N + D + S +RP+ +F GQ S LKVFI++AK R +LDH+LF G Sbjct: 1 MDKESITNSNENSYDVNNSSIRPKGFNDFIGQENIKSKLKVFIDSAKKRDVSLDHILFYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLAQ++A ELG N ++TS PVI + GDLA++LT L ++D+LFIDEIHRL +V Sbjct: 61 PPGLGKTTLAQIIAEELGSNIKATSAPVIERPGDLASILTTLGEKDILFIDEIHRLRTVV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF +D+ VGEG SA+S ++ L +FTLI ATTR GLL+ PL DRFGI RL Sbjct: 121 EEVLYSAMEDFFVDIKVGEGTSAKSFRVKLPKFTLIGATTRSGLLSTPLYDRFGIVERLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY EDL IV+R +K + +TD AA IA RSRGTPRI RLLRRV DFA V+ I Sbjct: 181 FYTNEDLADIVKRSSKFLNIDITDSAAISIASRSRGTPRIVNRLLRRVFDFATVSDVLKI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 + A +L +L +DK GF+ LD +YL I +N+ GGPVG++TIS LSE + IED+IE Sbjct: 241 DEKFASESLEKLGVDKNGFEALDKQYLDTIIKNYNGGPVGVDTISVSLSEQIETIEDVIE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 PY+IQ GFI+RTP+GR+ A+ +L I++ + Sbjct: 301 PYLIQSGFIKRTPKGRVATIKAYSYLNINVKNN 333 >gi|319775820|ref|YP_004138308.1| holliday junction DNA helicase RuvB [Haemophilus influenzae F3047] gi|329123664|ref|ZP_08252224.1| crossover junction ATP-dependent DNA helicase RuvB [Haemophilus aegyptius ATCC 11116] gi|317450411|emb|CBY86627.1| holliday junction DNA helicase RuvB [Haemophilus influenzae F3047] gi|327469863|gb|EGF15328.1| crossover junction ATP-dependent DNA helicase RuvB [Haemophilus aegyptius ATCC 11116] Length = 335 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/315 (57%), Positives = 236/315 (74%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ + + +FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 16 EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QL Sbjct: 76 ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY +EDL +IV R Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + +AA E+A RSRGTPRIA RLLRRVRD+A+V + I+ ++A AL L Sbjct: 196 SADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGVISVDVAKQALSMLD 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD LD + L+ + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315 Query: 315 RGRLLMPIAWQHLGI 329 RGR+ ++H G+ Sbjct: 316 RGRIATSQTYRHFGL 330 >gi|49187310|ref|YP_030562.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Sterne] gi|49181237|gb|AAT56613.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Sterne] Length = 336 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 189/333 (56%), Positives = 248/333 (74%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 +MD E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL Sbjct: 3 IMD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLL 61 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+ DVLFIDEIHRL Sbjct: 62 YGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHR 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ R Sbjct: 122 SIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSR 181 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V Sbjct: 182 LEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNG 241 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 T+T EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ Sbjct: 242 TVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFHGGPVGLETVSATIGEESHTIEDV 301 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 302 YEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMP 334 >gi|288940997|ref|YP_003443237.1| Holliday junction DNA helicase RuvB [Allochromatium vinosum DSM 180] gi|288896369|gb|ADC62205.1| Holliday junction DNA helicase RuvB [Allochromatium vinosum DSM 180] Length = 351 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/330 (56%), Positives = 241/330 (73%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M D + L++ +D I +RPR L ++ GQ +++FI AA+ R EALDHVL Sbjct: 1 MNDPDRLITAEAGADDRAIDRAIRPRKLADYVGQPAVREQMEIFIGAARGRKEALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A E+ VN R TSGPV+ K GDLAALLTNL+ DVLF+DEIHRLS Sbjct: 61 FGPPGLGKTTLSHIIAHEMQVNLRQTSGPVLEKPGDLAALLTNLDPGDVLFVDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y EDL IVQR A + G+ + A EIA R+RGTPRIA RLLRRVRD+A+V Sbjct: 181 LEYYSAEDLTHIVQRSAGILGIEAEPDGAAEIARRARGTPRIANRLLRRVRDYAQVRGDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ EIAD AL L +D +GFD +D R L+ + F GGPVG+E+++A + E R IED+ Sbjct: 241 RISAEIADRALSMLKVDALGFDHMDRRLLSAVIEKFDGGPVGVESLAAAIGEERGTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EP++IQQGF+ RTPRGR+ A+QH G+ Sbjct: 301 LEPFLIQQGFLMRTPRGRMATQSAYQHFGL 330 >gi|33602980|ref|NP_890540.1| Holliday junction DNA helicase B [Bordetella bronchiseptica RB50] gi|44888437|sp|Q7WGB3|RUVB_BORBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|33568611|emb|CAE34369.1| holliday junction DNA helicase [Bordetella bronchiseptica RB50] Length = 357 Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/311 (58%), Positives = 229/311 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE+ GQ A L++FI AA+ R EALDHVL GPPGLGKTTLA ++A E+GV Sbjct: 34 LRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG Sbjct: 94 LRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L IV R A L Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDELARIVTRSASLLNA 213 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T + A E+A RSRGTPRIA RLLRRVRD+A+V I ++ A AL L +D G D Sbjct: 214 DITADGAHEVARRSRGTPRIANRLLRRVRDYAQVKAHGVIDQDAAGRALAMLDVDPQGLD 273 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR Sbjct: 274 VMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRTATL 333 Query: 322 IAWQHLGIDIP 332 W+HLG+ P Sbjct: 334 TTWRHLGLTPP 344 >gi|289422378|ref|ZP_06424224.1| holliday junction DNA helicase RuvB [Peptostreptococcus anaerobius 653-L] gi|289157213|gb|EFD05832.1| holliday junction DNA helicase RuvB [Peptostreptococcus anaerobius 653-L] Length = 338 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/333 (54%), Positives = 252/333 (75%), Gaps = 1/333 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD E +++ + +ED +I + LRP++L+++ GQ ++ L++FI+AA R EALDHVL Sbjct: 1 MDEERIITSTMKEEDFEIENSLRPKSLDDYLGQEKSKEQLRIFIDAALNRNEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+GVN R TSGP I +AGDLAA+LTNL++ DVLFIDEIHR++ Sbjct: 61 GPPGLGKTTLAGIIANEMGVNLRITSGPAIERAGDLAAILTNLQENDVLFIDEIHRINRS 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMED LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+ ++L Sbjct: 121 VEEVLYPAMEDNCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLTNPLRDRFGVILKL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 ++Y E+L IV+R + + G + DE A +IA RSRGTPRIA RLL+RVRDFA+V Sbjct: 181 DYYNEEELAEIVKRSSSILGAGIQDEGAIQIASRSRGTPRIANRLLKRVRDFAQVRADGQ 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT ++A AL + +D +G D +D + LT I F GGPVG++T++A + E R+ IED+ Sbjct: 241 ITDDVAVDALDLIGVDSLGLDFVDNKLLTTIIDKFRGGPVGLDTLAASIGEDRNTIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY++Q GFI R PRGR+ MP A++HLG+ P Sbjct: 301 EPYLLQLGFINRAPRGRIAMPRAYEHLGMPYPQ 333 >gi|220935402|ref|YP_002514301.1| Holliday junction DNA helicase B [Thioalkalivibrio sp. HL-EbGR7] gi|254767448|sp|B8GUJ4|RUVB_THISH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|219996712|gb|ACL73314.1| Holliday junction DNA helicase B [Thioalkalivibrio sp. HL-EbGR7] Length = 353 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/330 (56%), Positives = 246/330 (74%), Gaps = 3/330 (0%) Query: 5 EGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 E L++ S++D AD S+ RP+ L ++ GQ +++FI AA+AR EALDHVL GP Sbjct: 3 ERLITPKGSRDDEAADFSI-RPQRLADYVGQPAVREQMEIFIGAARARGEALDHVLIFGP 61 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTL+ ++A ELGVN R +SGPV+ + GDLAALLTNLE RDVLF+DEIHRLS +VE Sbjct: 62 PGLGKTTLSHIIAHELGVNLRHSSGPVLERPGDLAALLTNLEPRDVLFVDEIHRLSPVVE 121 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LYPAMEDFQLD+++GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL F Sbjct: 122 EVLYPAMEDFQLDIVIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEF 181 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y ++DL IVQR A + G+++ A EIA RSRGTPRIA RLLRRVRD+A++ IT Sbjct: 182 YNVQDLTRIVQRAAGILGVSIEPAGAAEIARRSRGTPRIANRLLRRVRDYAQIKADGVIT 241 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 ++AD AL L +D GFD D R L + F GGPVG+++++A + E R IED++EP Sbjct: 242 DQVADRALDLLDVDVQGFDAQDRRLLLAVIEKFDGGPVGVDSLAAAIGEERGTIEDVVEP 301 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Y+IQQGF+ RTPRGR+ A+++ G+ P Sbjct: 302 YLIQQGFLMRTPRGRMATSNAYRYFGLPAP 331 >gi|254428183|ref|ZP_05041890.1| Holliday junction DNA helicase RuvB [Alcanivorax sp. DG881] gi|196194352|gb|EDX89311.1| Holliday junction DNA helicase RuvB [Alcanivorax sp. DG881] Length = 342 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 185/335 (55%), Positives = 241/335 (71%), Gaps = 2/335 (0%) Query: 2 MDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 MD E +++ S E+ +RP +L ++ GQ + +++FI+AA+ R EALDH L Sbjct: 1 MDNERVITAAAVGSHEEQQDRAIRPASLADYHGQAKVSERMEIFIDAARGRREALDHTLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++ARE+G +STSGPV+ KAGDLAA+LTNLE+ DVLF+DEIHRLS Sbjct: 61 FGPPGLGKTTLAHIIAREMGCELKSTSGPVLEKAGDLAAILTNLEEGDVLFVDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR GLLT PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTAPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DL IV R + + + A E+A R+RGTPRIA RLLRRVRD+AEV Sbjct: 181 LEFYSVDDLSGIVSRACDILAIPIETAGAMEVARRARGTPRIANRLLRRVRDYAEVKGDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT +IA AL L +D G D D R L MI F GGPVG+E+++A L+E +E++ Sbjct: 241 RITEDIAQRALDMLEVDSCGLDGTDRRLLDMIMHKFDGGPVGLESLAAALNEDSGTLEEV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 +EPY+IQQGFIQRTPRGR + AW+H G+ P + Sbjct: 301 VEPYLIQQGFIQRTPRGRAVTNHAWRHFGLQRPRQ 335 >gi|113460416|ref|YP_718478.1| Holliday junction DNA helicase RuvB [Haemophilus somnus 129PT] gi|170717674|ref|YP_001783496.1| Holliday junction DNA helicase RuvB [Haemophilus somnus 2336] gi|123031154|sp|Q0I1M3|RUVB_HAES1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189046035|sp|B0UVK4|RUVB_HAES2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|112822459|gb|ABI24548.1| Holliday junction DNA helicase subunit RuvB [Haemophilus somnus 129PT] gi|168825803|gb|ACA31174.1| Holliday junction DNA helicase RuvB [Haemophilus somnus 2336] Length = 335 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/331 (56%), Positives = 244/331 (73%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S N +D I +RP+ L ++ GQ + +++FI+AAK R +ALDH+L Sbjct: 1 MIEVDRIVSANAKVDDEYIDRAIRPKLLSDYIGQPQVREQMEIFIQAAKLRQDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY +EDL +IV R A L + EA EIA RSRGTPRIA RLLRRVRD+A+V + Sbjct: 181 LEFYSVEDLASIVTRSAVCLQLEIDVEAGQEIACRSRGTPRIANRLLRRVRDYADVKNGG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT IA AL L +D GFD +D + L I F GGPVG++ ++A + E RD IED+ Sbjct: 241 KITALIAQEALKMLDVDLAGFDFMDRKLLQAIIERFDGGPVGLDNLAAAIGEERDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 +EPY+IQQGF+QRTPRGR+ ++H G++ Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYRHFGLE 331 >gi|20807636|ref|NP_622807.1| Holliday junction DNA helicase B [Thermoanaerobacter tengcongensis MB4] gi|254478016|ref|ZP_05091400.1| Holliday junction DNA helicase RuvB [Carboxydibrachium pacificum DSM 12653] gi|22001975|sp|Q8RAN2|RUVB_THETN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|20516179|gb|AAM24411.1| Holliday junction resolvasome helicase subunit [Thermoanaerobacter tengcongensis MB4] gi|214036020|gb|EEB76710.1| Holliday junction DNA helicase RuvB [Carboxydibrachium pacificum DSM 12653] Length = 338 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/323 (55%), Positives = 244/323 (75%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E +L++N +QEDA LRPR L E+ GQ + LK++IEAAK R E LDHVL GPPG Sbjct: 3 ERILTQNFTQEDATEYSLRPRWLSEYIGQEKIKQELKIYIEAAKKRGEPLDHVLLYGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA V++ E+GV + TSGP I ++GDLAA+LTNL++ D+LFIDEIHRL+ VEEI Sbjct: 63 LGKTTLATVISNEMGVGIKITSGPAIERSGDLAAILTNLQENDILFIDEIHRLNRSVEEI 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF+LD+++G+GPSARS++++L +FTLI ATTR L+T+PL+ RFG+ RL++Y Sbjct: 123 LYPAMEDFELDIVIGKGPSARSIRLSLPKFTLIGATTRAALMTSPLRSRFGVINRLDYYS 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+LK I++R A + + + ++AA EIA RSRGTPRIA RLL+RVRDFAEV I Sbjct: 183 VEELKEIIKRSANILNIGIDEDAAFEIARRSRGTPRIANRLLKRVRDFAEVKGNGYIDYN 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 A+ AL L +D+MG +++D + L I FGGGPVGI+ I+A + E D IED+ EPY+ Sbjct: 243 TANIALNMLGVDEMGLEEIDRKILIAIIEKFGGGPVGIDAIAASVGEDGDTIEDMYEPYL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327 +Q GF+ RTPRGR++ +A+Q+L Sbjct: 303 MQIGFLNRTPRGRVVTKLAYQYL 325 >gi|251798376|ref|YP_003013107.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. JDR-2] gi|247546002|gb|ACT03021.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. JDR-2] Length = 333 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/335 (56%), Positives = 248/335 (74%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++S N+ ++ + L LRPR L E+ GQ +A NLK++I+AAK R EALDHVL Sbjct: 1 MEDR--IISANLMMDEQAMELSLRPRYLAEYIGQSKAKENLKIYIDAAKMRKEALDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL Sbjct: 59 YGPPGLGKTTLSNIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMEDF LD+M+G+GPSARSV+++L FTLI ATTR GLL+ PL+DRFG+ R Sbjct: 119 TVEEVLYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVISR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY +++L IV R A++ +A+ EA+ EIAMRSRGTPRIA RLL+RVRD+A+V Sbjct: 179 LEFYTMDELAYIVSRSAEIFDIAIIGEASEEIAMRSRGTPRIANRLLKRVRDYAQVRGDG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT EIA +AL +D +G D +D + L + F G PVG++TI+A + E IED+ Sbjct: 239 IITHEIAKSALELQQVDPVGLDSIDHKMLLAMMTTFAGRPVGLDTIAASIGEESQTIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY++Q GF+QRTPRGR+ A++HLG+ +P R Sbjct: 299 YEPYLMQIGFLQRTPRGRIATDQAYRHLGMPVPER 333 >gi|148825409|ref|YP_001290162.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittEE] gi|166231497|sp|A5UAH8|RUVB_HAEIE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|148715569|gb|ABQ97779.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittEE] Length = 335 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/315 (57%), Positives = 236/315 (74%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ + + +FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 16 EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QL Sbjct: 76 ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY +EDL +IV R Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + +AA E+A RSRGTPRIA RLLRRVRD+A+V + I+ ++A AL L Sbjct: 196 SAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGVISVDVAKQALSMLD 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD LD + L+ + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315 Query: 315 RGRLLMPIAWQHLGI 329 RGR+ ++H G+ Sbjct: 316 RGRIATSKTYRHFGL 330 >gi|30264490|ref|NP_846867.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Ames] gi|47529948|ref|YP_021297.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. 'Ames Ancestor'] gi|65321786|ref|ZP_00394745.1| COG2255: Holliday junction resolvasome, helicase subunit [Bacillus anthracis str. A2012] gi|165871997|ref|ZP_02216638.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0488] gi|167636202|ref|ZP_02394506.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0442] gi|167640705|ref|ZP_02398965.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0193] gi|170688711|ref|ZP_02879916.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0465] gi|170709114|ref|ZP_02899541.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0389] gi|177653980|ref|ZP_02936021.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0174] gi|190566862|ref|ZP_03019778.1| Holliday junction DNA helicase RuvB [Bacillus anthracis Tsiankovskii-I] gi|227817198|ref|YP_002817207.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. CDC 684] gi|229602286|ref|YP_002868706.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0248] gi|254684175|ref|ZP_05148035.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. CNEVA-9066] gi|254724654|ref|ZP_05186437.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A1055] gi|254736522|ref|ZP_05194228.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Western North America USA6153] gi|254741560|ref|ZP_05199247.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Kruger B] gi|254751341|ref|ZP_05203378.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Vollum] gi|254757673|ref|ZP_05209700.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Australia 94] gi|33301602|sp|Q81LG9|RUVB_BACAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767408|sp|C3P9A7|RUVB_BACAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767409|sp|C3L6U9|RUVB_BACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|30259148|gb|AAP28353.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Ames] gi|47505096|gb|AAT33772.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. 'Ames Ancestor'] gi|164712287|gb|EDR17823.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0488] gi|167511277|gb|EDR86663.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0193] gi|167528423|gb|EDR91191.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0442] gi|170125966|gb|EDS94866.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0389] gi|170667397|gb|EDT18155.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0465] gi|172081035|gb|EDT66113.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0174] gi|190561853|gb|EDV15822.1| Holliday junction DNA helicase RuvB [Bacillus anthracis Tsiankovskii-I] gi|227005878|gb|ACP15621.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. CDC 684] gi|229266694|gb|ACQ48331.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0248] Length = 333 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 245/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFHGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|145632563|ref|ZP_01788297.1| Holliday junction DNA helicase B [Haemophilus influenzae 3655] gi|229845013|ref|ZP_04465150.1| Holliday junction DNA helicase B [Haemophilus influenzae 6P18H1] gi|144986758|gb|EDJ93310.1| Holliday junction DNA helicase B [Haemophilus influenzae 3655] gi|229812147|gb|EEP47839.1| Holliday junction DNA helicase B [Haemophilus influenzae 6P18H1] Length = 335 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/308 (58%), Positives = 234/308 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ + + +FI+AAK R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QLD+M+GEG Sbjct: 83 IRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY +EDL +IV R A L Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAGCLNL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA E+A RSRGTPRIA RLLRRVRD+A+V + I+ ++A AL L +D GFD Sbjct: 203 ELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGVISVDVAKQALSMLDVDDAGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD + L+ + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR+ Sbjct: 263 YLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATS 322 Query: 322 IAWQHLGI 329 ++H G+ Sbjct: 323 KTYRHFGL 330 >gi|295695627|ref|YP_003588865.1| Holliday junction DNA helicase RuvB [Bacillus tusciae DSM 2912] gi|295411229|gb|ADG05721.1| Holliday junction DNA helicase RuvB [Bacillus tusciae DSM 2912] Length = 340 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 191/325 (58%), Positives = 240/325 (73%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 +E ++S + + ED + LRPR L E+ GQ + NL+VFI AAK R EALDHVL GPP Sbjct: 2 QERMVSAHYTGEDGQLESLRPRNLNEYIGQDQVKENLRVFITAAKMRREALDHVLLYGPP 61 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A ELGV +TSGP I + GDLAA+LTNL + DVLFIDEIHRLS +VEE Sbjct: 62 GLGKTTLAGIIAHELGVQMHTTSGPAIERPGDLAAILTNLSEGDVLFIDEIHRLSRVVEE 121 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 ILYPAMED+ LD ++G+GPSARS++++L FTLI ATTR GLL++PL+DRFG+ L +Y Sbjct: 122 ILYPAMEDYALDFIIGKGPSARSIRLDLPPFTLIGATTRAGLLSSPLRDRFGVVGHLEYY 181 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 EDL IV+R A++ + + E A EIA RSRGTPR+AGRLL+RVRDFA+V I R Sbjct: 182 SQEDLCRIVRRAAQILQVPLEPEGAEEIARRSRGTPRVAGRLLKRVRDFAQVDGHGKIDR 241 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 E+A AAL R+ +D G D LD R L + +FGGGPVG+ET+SA L E D IED+ EPY Sbjct: 242 EVAAAALERIQVDSAGLDALDHRLLLTMIDHFGGGPVGLETLSATLGEEPDTIEDVYEPY 301 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328 ++Q GFIQRTPRGR++ A HLG Sbjct: 302 LLQIGFIQRTPRGRVVTERACAHLG 326 >gi|114321924|ref|YP_743607.1| Holliday junction DNA helicase RuvB [Alkalilimnicola ehrlichii MLHE-1] gi|122310676|sp|Q0A4X0|RUVB_ALHEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|114228318|gb|ABI58117.1| Holliday junction DNA helicase subunit RuvB [Alkalilimnicola ehrlichii MLHE-1] Length = 351 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/334 (56%), Positives = 245/334 (73%), Gaps = 5/334 (1%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR L++ + S ED I +RPR L ++ GQ +++F+ AA+ R EALDH L Sbjct: 1 MNDR--LITPDASGEDEAIDRAIRPRRLTDYIGQPVVREQMEIFVHAARGRGEALDHTLI 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GV+ R TSGPV+ K GDLAALLTNLE DVLF+DEIHRLS Sbjct: 59 FGPPGLGKTTLAHIIANEMGVSMRQTSGPVLDKPGDLAALLTNLEPHDVLFVDEIHRLSA 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMEDFQ+D+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI R Sbjct: 119 VVEEVLYPAMEDFQIDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAAC-EIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 L +Y + DL IV+R A L L++ DE C EIA R+RGTPRIA RLLRRVRD+AEV Sbjct: 179 LEYYNVADLSGIVKRSAHLLNLSI-DETGCQEIAGRARGTPRIANRLLRRVRDYAEVRAD 237 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 I+ E+A AA+ L +D+ GFD+ D R L I F GGPVG+++I+A + E R IED Sbjct: 238 GHISGEVAHAAMELLNVDRNGFDEQDRRLLLAIMEKFDGGPVGLDSIAAAIGEERGTIED 297 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++EPY+IQQG++ RTPRGR+ AW H G++ P Sbjct: 298 VVEPYLIQQGYLMRTPRGRMATRNAWLHFGLNPP 331 >gi|119477230|ref|ZP_01617466.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium HTCC2143] gi|119449593|gb|EAW30831.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium HTCC2143] Length = 354 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/309 (59%), Positives = 234/309 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL ++ GQ + +FI AA+ R E LDH L GPPGLGKTTLA ++A E+GV+ Sbjct: 23 IRPKTLVDYVGQPVVREQMDIFISAARLRDEPLDHTLIFGPPGLGKTTLANILATEMGVS 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGPV+ KAGDLAAL+TNLE DVLFIDEIHRLS +EEILYPAMED+QLD+M+GEG Sbjct: 83 LKTTSGPVLEKAGDLAALMTNLEPGDVLFIDEIHRLSPQIEEILYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY EDL IV R A + + Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNTEDLTHIVSRSAAILDV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E ACEIA RSRGTPRIA RLLRRVRD+A+V +IT+ IAD AL L ID+ GFD Sbjct: 203 LMDEEGACEIARRSRGTPRIANRLLRRVRDYADVKGDGSITKSIADKALDMLNIDQHGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R L + F GGPVG+++++A +SE R IED++EPY+IQQG+I R+PRGR+ Sbjct: 263 HLDRRLLLALIEKFDGGPVGVDSLAAAISEERGTIEDVLEPYLIQQGYILRSPRGRMATR 322 Query: 322 IAWQHLGID 330 A+ H G+D Sbjct: 323 NAYLHFGLD 331 >gi|229129700|ref|ZP_04258668.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus BDRD-Cer4] gi|228653817|gb|EEL09687.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus BDRD-Cer4] Length = 333 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/329 (57%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQNKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G++IP Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 331 >gi|49481506|ref|YP_038470.1| Holliday junction DNA helicase RuvB [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141086|ref|YP_085743.1| Holliday junction DNA helicase B [Bacillus cereus E33L] gi|68715378|sp|Q634C4|RUVB_BACCZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|68715488|sp|Q6HDA6|RUVB_BACHK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|49333062|gb|AAT63708.1| holliday junction DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974555|gb|AAU16105.1| Holliday junction DNA helicase, subunit B [Bacillus cereus E33L] Length = 336 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/333 (56%), Positives = 248/333 (74%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 +MD E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL Sbjct: 3 IMD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLL 61 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+ DVLFIDEIHRL Sbjct: 62 YGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHR 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ R Sbjct: 122 SIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSR 181 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V Sbjct: 182 LEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNG 241 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 T+T EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ Sbjct: 242 TVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDV 301 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 302 YEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMP 334 >gi|330502220|ref|YP_004379089.1| Holliday junction DNA helicase RuvB [Pseudomonas mendocina NK-01] gi|328916506|gb|AEB57337.1| Holliday junction DNA helicase RuvB [Pseudomonas mendocina NK-01] Length = 350 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 185/313 (59%), Positives = 236/313 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + +FI+AA+ RAEALDH L GPPGLGKTTLA ++A E+G + Sbjct: 23 IRPLRLADYIGQPVVREQMALFIQAARGRAEALDHTLIFGPPGLGKTTLANIIAEEMGSS 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ + GDLAALLTNLE DVLFIDEIHRLS +VEE+LYPAMEDFQLD+M+GEG Sbjct: 83 IKSTSGPVLERPGDLAALLTNLESGDVLFIDEIHRLSPVVEEVLYPAMEDFQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY I+DL TIV R A + GL Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYGIDDLATIVSRSAGILGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA RLLRRVRDFAEV I++ IAD AL L +D+ GFD Sbjct: 203 PIEAKGAFEIARRARGTPRIANRLLRRVRDFAEVRGTGHISQSIADQALNLLDVDERGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + F GGPVG+++++A + E R IED++EPY+IQQG++ RTPRGR++ Sbjct: 263 HSDRRLLLAMIEKFDGGPVGLDSLAAAIGEERHTIEDVLEPYLIQQGYMMRTPRGRVVTR 322 Query: 322 IAWQHLGIDIPHR 334 A+ H G++IP R Sbjct: 323 HAYLHFGLNIPKR 335 >gi|262375569|ref|ZP_06068802.1| Holliday junction DNA helicase RuvB [Acinetobacter lwoffii SH145] gi|262309823|gb|EEY90953.1| Holliday junction DNA helicase RuvB [Acinetobacter lwoffii SH145] Length = 335 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/333 (56%), Positives = 245/333 (73%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+S + ED +RP +L+++ GQ +++FI AA+ R EALDH L Sbjct: 1 MQDR--LISGSEKPEDHFDRAIRPTSLDDYIGQPVVREQMEIFIGAARGREEALDHTLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +EDL IV+R A L + +T + A EIA RSRGTPRIA RLLRRVRD+A+V Sbjct: 179 EFYSVEDLTHIVKRSANLMDVPMTGDGAKEIARRSRGTPRIANRLLRRVRDYAQVKGTGE 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +++A AL L +DK G D LD RYL+M+ F GGP G+E ++A ++E +ED+I Sbjct: 239 INQDMAQRALDMLKVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVI 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY+IQQG++ RT RGR+ +A+ G+ P Sbjct: 299 EPYLIQQGYVMRTARGRIATNMAYLQFGMTPPE 331 >gi|291530841|emb|CBK96426.1| Holliday junction DNA helicase, RuvB subunit [Eubacterium siraeum 70/3] Length = 350 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/330 (57%), Positives = 241/330 (73%), Gaps = 3/330 (0%) Query: 3 DREG--LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 D EG ++ S ED D+ LRPR L E+ GQ + NL+V+I+AAK R E+LDHVL Sbjct: 12 DDEGARIVEPQFSAEDTDVEFSLRPRKLNEYIGQEKVKENLQVYIQAAKKRNESLDHVLL 71 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GVNF+ TSGP I K G+LAALLT L+ DVLF+DEIHRLS Sbjct: 72 YGPPGLGKTTLAGIIANEMGVNFKVTSGPAIEKPGELAALLTGLQAGDVLFVDEIHRLSR 131 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEILYPA+ED LD+M+G+GPSA+S++++L+RFTLI ATTR G LT PL+DRFG+ +R Sbjct: 132 QVEEILYPALEDCVLDIMIGKGPSAQSIRVDLNRFTLIGATTRAGQLTGPLRDRFGVIMR 191 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L Y E+L IV R + + + A EIA RSRGTPRIA RLL+RVRDFAEV Sbjct: 192 LEMYTPEELCDIVMRSSVILSIPCDRSGAMEIAKRSRGTPRIANRLLKRVRDFAEVMGNG 251 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT+E+AD AL RL IDK+G D LD R+LTMI + GGPVG+ET+++ L E +ED+ Sbjct: 252 KITKEMADIALNRLEIDKLGLDSLDKRFLTMIINGYNGGPVGLETLASALGEESVTLEDV 311 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GFI RTPRGR +A++HLG+ Sbjct: 312 CEPYLMQLGFISRTPRGRCATELAYKHLGL 341 >gi|301169021|emb|CBW28618.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Haemophilus influenzae 10810] Length = 335 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/315 (57%), Positives = 235/315 (74%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ + + +FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 16 EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QL Sbjct: 76 ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY +EDL +IV R Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + +AA E+A RSRGTPRIA RLLRRVRD+A+V + I+ +A AL L Sbjct: 196 SADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGIISINVAKQALSMLD 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD LD + L+ + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315 Query: 315 RGRLLMPIAWQHLGI 329 RGR+ ++H G+ Sbjct: 316 RGRIATSQTYRHFGL 330 >gi|194366896|ref|YP_002029506.1| Holliday junction DNA helicase RuvB [Stenotrophomonas maltophilia R551-3] gi|238693499|sp|B4ST32|RUVB_STRM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|194349700|gb|ACF52823.1| Holliday junction DNA helicase RuvB [Stenotrophomonas maltophilia R551-3] Length = 346 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/316 (58%), Positives = 238/316 (75%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ++DA + +RP+ L ++ GQV ++++I+AAK R +ALDHVL GPPGLGKTTL+ V Sbjct: 14 EDDAADASIRPKRLADYLGQVPVREQMEIYIQAAKGRGDALDHVLIFGPPGLGKTTLSHV 73 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGV R TSGPVI KAGDLAALLTNL+ DVLFIDEIHRLS +VEE+LYPAMEDFQ Sbjct: 74 IANELGVALRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 133 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL FY +E+L IV+ Sbjct: 134 IDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLEFYSVEELTRIVR 193 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + + T + A EIA R+RGTPRIA RLLRRVRD+A+V I +A AA+ L Sbjct: 194 RSAAILAIDCTADGAGEIARRARGTPRIANRLLRRVRDYAQVKAGGHIDEAVAQAAMKML 253 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD+LD R L + F GGPVGIE+++A LSE R +ED++EPY+IQQGF+ RT Sbjct: 254 KVDPEGFDELDRRLLKTMVDYFDGGPVGIESLAAALSEERGTLEDVVEPYLIQQGFLVRT 313 Query: 314 PRGRLLMPIAWQHLGI 329 RGR+ A++H+G+ Sbjct: 314 ARGRMATHKAYRHMGL 329 >gi|145636554|ref|ZP_01792222.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittHH] gi|145270379|gb|EDK10314.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittHH] Length = 335 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/308 (58%), Positives = 233/308 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ + + +FI+AAK R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 IRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QLD+M+GEG Sbjct: 83 IRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY +EDL +IV R A L Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAGCLNL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA E+A RSRGTPRIA RLLRRVRD+A+V + I+ +A AL L +D GFD Sbjct: 203 ELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGVISVNVAKQALSMLDVDDAGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD + L+ + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR+ Sbjct: 263 YLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATS 322 Query: 322 IAWQHLGI 329 ++H G+ Sbjct: 323 KTYRHFGL 330 >gi|68248919|ref|YP_248031.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae 86-028NP] gi|145628661|ref|ZP_01784461.1| Holliday junction DNA helicase B [Haemophilus influenzae 22.1-21] gi|145631440|ref|ZP_01787210.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae R3021] gi|145638775|ref|ZP_01794384.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittII] gi|260582590|ref|ZP_05850380.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae NT127] gi|81336670|sp|Q4QNM6|RUVB_HAEI8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|68057118|gb|AAX87371.1| holliday junction DNA helicase RuvB [Haemophilus influenzae 86-028NP] gi|144979131|gb|EDJ88817.1| Holliday junction DNA helicase B [Haemophilus influenzae 22.1-21] gi|144982977|gb|EDJ90486.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae R3021] gi|145272370|gb|EDK12278.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittII] gi|260094401|gb|EEW78299.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae NT127] gi|309750265|gb|ADO80249.1| Holliday junction resolvasome, ATPase subunit [Haemophilus influenzae R2866] Length = 335 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/315 (57%), Positives = 235/315 (74%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ + + +FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 16 EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QL Sbjct: 76 ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY +EDL +IV R Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + +AA E+A RSRGTPRIA RLLRRVRD+A+V + I+ +A AL L Sbjct: 196 SADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGIISINVAKQALSMLD 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD LD + L+ + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315 Query: 315 RGRLLMPIAWQHLGI 329 RGR+ ++H G+ Sbjct: 316 RGRIATSQTYRHFGL 330 >gi|206969947|ref|ZP_03230901.1| Holliday junction DNA helicase RuvB [Bacillus cereus AH1134] gi|218234560|ref|YP_002369229.1| Holliday junction DNA helicase RuvB [Bacillus cereus B4264] gi|228923172|ref|ZP_04086463.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228960693|ref|ZP_04122337.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar pakistani str. T13001] gi|229071928|ref|ZP_04205139.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus F65185] gi|229081684|ref|ZP_04214179.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock4-2] gi|229111892|ref|ZP_04241438.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock1-15] gi|229146991|ref|ZP_04275353.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus BDRD-ST24] gi|229152623|ref|ZP_04280812.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus m1550] gi|229180696|ref|ZP_04308036.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus 172560W] gi|229192631|ref|ZP_04319592.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus ATCC 10876] gi|296504910|ref|YP_003666610.1| Holliday junction DNA helicase B [Bacillus thuringiensis BMB171] gi|226725452|sp|B7HE54|RUVB_BACC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|206735635|gb|EDZ52803.1| Holliday junction DNA helicase RuvB [Bacillus cereus AH1134] gi|218162517|gb|ACK62509.1| Holliday junction DNA helicase RuvB [Bacillus cereus B4264] gi|228590938|gb|EEK48796.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus ATCC 10876] gi|228602841|gb|EEK60322.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus 172560W] gi|228630884|gb|EEK87524.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus m1550] gi|228636488|gb|EEK92956.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus BDRD-ST24] gi|228671648|gb|EEL26946.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock1-15] gi|228701688|gb|EEL54179.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock4-2] gi|228711224|gb|EEL63188.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus F65185] gi|228798999|gb|EEM45972.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228836551|gb|EEM81901.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325962|gb|ADH08890.1| Holliday junction DNA helicase B [Bacillus thuringiensis BMB171] Length = 333 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/329 (57%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G++IP Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 331 >gi|196034306|ref|ZP_03101715.1| Holliday junction DNA helicase RuvB [Bacillus cereus W] gi|222097865|ref|YP_002531922.1| holliday junction DNA helicase ruvb [Bacillus cereus Q1] gi|228929465|ref|ZP_04092486.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935740|ref|ZP_04098553.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229093492|ref|ZP_04224595.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock3-42] gi|229123961|ref|ZP_04253153.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus 95/8201] gi|254767411|sp|B9IYZ4|RUVB_BACCQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|195992848|gb|EDX56807.1| Holliday junction DNA helicase RuvB [Bacillus cereus W] gi|221241923|gb|ACM14633.1| holliday junction DNA helicase [Bacillus cereus Q1] gi|228659263|gb|EEL14911.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus 95/8201] gi|228689963|gb|EEL43767.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock3-42] gi|228823978|gb|EEM69797.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830253|gb|EEM75869.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 333 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 245/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|296117350|ref|ZP_06835940.1| Holliday junction DNA helicase RuvB [Gluconacetobacter hansenii ATCC 23769] gi|295976116|gb|EFG82904.1| Holliday junction DNA helicase RuvB [Gluconacetobacter hansenii ATCC 23769] Length = 352 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 205/324 (63%), Positives = 253/324 (78%), Gaps = 2/324 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 ++D + LRP+TL++FTGQ + NL +FI AA+ R EA+DHVL GPPGLGKTTLAQ Sbjct: 14 GEDDIAEASLRPQTLDDFTGQKASRENLAIFIAAARQRGEAMDHVLLHGPPGLGKTTLAQ 73 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL +EE+LYPAMEDF Sbjct: 74 IVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPSIEEVLYPAMEDF 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 QLDL++GEGP+ARSV+I+L+ FTL+AATTR GLL PL+DRFGIP+RL FY E+L+ IV Sbjct: 134 QLDLIIGEGPAARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPEELRQIV 193 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA--KTITREIADAAL 250 RGA+ +T + A EIA RSRGTPRIAGRLLRRVRDFA VA + + R +ADAAL Sbjct: 194 SRGAQKLNFELTHDGAEEIARRSRGTPRIAGRLLRRVRDFAAVARSGHGPVDRALADAAL 253 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 RL +D MG D +D RYL IA+ GGPVG+ET++A L+E RD IED+IEPY+IQ+G + Sbjct: 254 ARLEVDSMGLDGMDRRYLRRIAQYHHGGPVGVETLAAALAEARDTIEDVIEPYLIQEGLV 313 Query: 311 QRTPRGRLLMPIAWQHLGIDIPHR 334 RT RGR+L W+HLG+ P R Sbjct: 314 LRTSRGRMLGERGWRHLGLVPPAR 337 >gi|228948134|ref|ZP_04110418.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811492|gb|EEM57829.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 333 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 245/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGEFAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|171060624|ref|YP_001792973.1| Holliday junction DNA helicase RuvB [Leptothrix cholodnii SP-6] gi|238689127|sp|B1Y8E2|RUVB_LEPCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|170778069|gb|ACB36208.1| Holliday junction DNA helicase RuvB [Leptothrix cholodnii SP-6] Length = 363 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/319 (58%), Positives = 236/319 (73%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L+E+ GQ +A L++FI AA+ R+EALDHVL GPPGLGKTTL+ + Sbjct: 31 NEEAMERALRPKLLQEYVGQAKAREQLEIFIGAARKRSEALDHVLLFGPPGLGKTTLSHI 90 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGVN R TSGPV+ K DLAA+LTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 91 IAAELGVNLRQTSGPVLEKPKDLAAILTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 150 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 151 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELVRIVT 210 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + + E A E+A RSRGTPRIA RLLRRVRD+AEV I + IA+ AL L Sbjct: 211 RSAGLLNVPIDAEGALELACRSRGTPRIANRLLRRVRDYAEVKSDGRIVKRIAELALTML 270 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L + F GGPVG++ ++A + E IED+IEPY+IQQGF+QRT Sbjct: 271 DVDPRGFDVMDRKLLEAVIHRFDGGPVGLDNVAAAIGEDAGTIEDVIEPYLIQQGFLQRT 330 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A++HLG+ P Sbjct: 331 PRGRIATLAAYRHLGVTPP 349 >gi|42783551|ref|NP_980798.1| Holliday junction DNA helicase RuvB [Bacillus cereus ATCC 10987] gi|206976061|ref|ZP_03236971.1| Holliday junction DNA helicase RuvB [Bacillus cereus H3081.97] gi|217961911|ref|YP_002340481.1| Holliday junction DNA helicase RuvB [Bacillus cereus AH187] gi|229141159|ref|ZP_04269700.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus BDRD-ST26] gi|47606081|sp|P61528|RUVB_BACC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226725453|sp|B7HQH9|RUVB_BACC7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|42739480|gb|AAS43406.1| Holliday junction DNA helicase RuvB [Bacillus cereus ATCC 10987] gi|206745813|gb|EDZ57210.1| Holliday junction DNA helicase RuvB [Bacillus cereus H3081.97] gi|217063448|gb|ACJ77698.1| Holliday junction DNA helicase RuvB [Bacillus cereus AH187] gi|228642322|gb|EEK98612.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus BDRD-ST26] Length = 333 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 245/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|301055928|ref|YP_003794139.1| holliday junction DNA helicase RuvB [Bacillus anthracis CI] gi|300378097|gb|ADK07001.1| holliday junction DNA helicase RuvB [Bacillus cereus biovar anthracis str. CI] Length = 333 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R ++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSAIVERTGEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G++IP Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 331 >gi|229048129|ref|ZP_04193700.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus AH676] gi|228723232|gb|EEL74606.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus AH676] Length = 333 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/329 (57%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGEPAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G++IP Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 331 >gi|258621409|ref|ZP_05716443.1| Holliday junction DNA helicase RuvB [Vibrio mimicus VM573] gi|258586797|gb|EEW11512.1| Holliday junction DNA helicase RuvB [Vibrio mimicus VM573] Length = 314 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/307 (58%), Positives = 233/307 (75%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83 P+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGKTTLA +VA E+GVN R Sbjct: 7 PKKLADYQGQDHVRDQMEIFIKAAQQRQEALDHLLIFGPPGLGKTTLANIVANEMGVNIR 66 Query: 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143 +TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEGP+ Sbjct: 67 TTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPA 126 Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203 ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y + DL+ IVQR A GL++ Sbjct: 127 ARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYNVADLQNIVQRSAHCLGLSM 186 Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263 + A E+A R+RGTPRIA RLLRRVRD+AEV I + AD AL L +D GFD + Sbjct: 187 DSDGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAKTADKALDMLDVDHQGFDYM 246 Query: 264 DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIA 323 D + L I F GGPVG++ ++A + E +D IED++EP++IQQG++QRTPRGR+ A Sbjct: 247 DRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGRIATDRA 306 Query: 324 WQHLGID 330 + H G++ Sbjct: 307 YLHFGLE 313 >gi|228941588|ref|ZP_04104136.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974517|ref|ZP_04135084.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981111|ref|ZP_04141412.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis Bt407] gi|228778652|gb|EEM26918.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis Bt407] gi|228785234|gb|EEM33246.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818095|gb|EEM64172.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942201|gb|AEA18097.1| Holliday junction DNA helicase B [Bacillus thuringiensis serovar chinensis CT-43] Length = 333 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSAIVERTAEVFEVEINSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|118479575|ref|YP_896726.1| Holliday junction DNA helicase RuvB [Bacillus thuringiensis str. Al Hakam] gi|166231463|sp|A0RJ26|RUVB_BACAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|118418800|gb|ABK87219.1| Holliday junction DNA helicase subunit RuvB [Bacillus thuringiensis str. Al Hakam] Length = 336 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/333 (56%), Positives = 247/333 (74%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 +MD E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL Sbjct: 3 IMD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLL 61 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+ DVLFIDEIHRL Sbjct: 62 YGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHR 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ R Sbjct: 122 SIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSR 181 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y ++ L IV+R ++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V Sbjct: 182 LEYYTVDQLSAIVERTGEVFEVEINSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNG 241 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 T+T EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ Sbjct: 242 TVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDV 301 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 302 YEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMP 334 >gi|289674672|ref|ZP_06495562.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. syringae FF5] Length = 315 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 183/296 (61%), Positives = 231/296 (78%) Query: 39 NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA 98 +++FI+AA+ R+EALDH L GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA Sbjct: 3 QMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAA 62 Query: 99 LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158 +LTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L FTL+ Sbjct: 63 ILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG 122 Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218 ATTR G+LTNPL+DRFGI RL FY I DL TIV R A + GL + + A EIA R+RGT Sbjct: 123 ATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGLVIEPQGAFEIARRARGT 182 Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278 PRIA RLLRRVRDFAEV ITR+ AD AL L +D+ GFD D R L + F GG Sbjct: 183 PRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGG 242 Query: 279 PVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 PVG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ A+ H G++IP R Sbjct: 243 PVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 298 >gi|260551461|ref|ZP_05825645.1| Holliday junction resolvasome [Acinetobacter sp. RUH2624] gi|293609858|ref|ZP_06692160.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|260405455|gb|EEW98948.1| Holliday junction resolvasome [Acinetobacter sp. RUH2624] gi|292828310|gb|EFF86673.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123085|gb|ADY82608.1| Holliday junction DNA helicase B [Acinetobacter calcoaceticus PHEA-2] Length = 334 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/333 (56%), Positives = 241/333 (72%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+S ED +RP +L ++ GQ +++FI AA+ R EALDH L Sbjct: 1 MQDR--LISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +EDL IV R A L + +T E A E+A RSRGTPRIA RLLRRVRD+A+V Sbjct: 179 EFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGE 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T E+A AL L +DK G D LD RYL+M+ F GGP G+E ++A ++E +ED+I Sbjct: 239 VTHEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVI 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY+IQQG++ RT RGR+ ++ G+ P Sbjct: 299 EPYLIQQGYVMRTARGRIATNQSYLQFGMTPPE 331 >gi|317121687|ref|YP_004101690.1| Holliday junction DNA helicase subunit RuvB [Thermaerobacter marianensis DSM 12885] gi|315591667|gb|ADU50963.1| Holliday junction DNA helicase subunit RuvB [Thermaerobacter marianensis DSM 12885] Length = 372 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 185/333 (55%), Positives = 250/333 (75%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ E ++S + D + LRP++L++F GQ L ++I+AA+ R +ALDHVL Sbjct: 1 MIEEERVVSSRLQPGDVPLEQGLRPQSLDDFPGQEAVKERLSIYIQAARERGDALDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKT+LAQV+ARELGV FR TSGP I +AGDLAALLTNL DRDVLFIDEIHRL Sbjct: 61 YGPPGLGKTSLAQVIARELGVGFRMTSGPAIERAGDLAALLTNLNDRDVLFIDEIHRLPR 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMEDF LDL++G+GP+ARS++I+L RFTL+ ATTR G LT PL+DRFG+ +R Sbjct: 121 PVEEVLYPAMEDFALDLIIGKGPAARSLRIDLPRFTLVGATTRAGRLTGPLRDRFGVLLR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y E+L IV R A++ G+ + E A E+A R+RGTPR+A RLLRR+RD+A+V Sbjct: 181 LEYYRPEELARIVLRSARILGVPIDPEGAEEVARRARGTPRVANRLLRRLRDYAQVRADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT E+A A L + +D +G D+ D R L ++A ++GGGPVG+ET++A + E + IED+ Sbjct: 241 VITAEVARAGLDLMEVDPLGLDRADRRLLRVMAEHYGGGPVGLETLAAAIGEEPETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q GF+QRTPRGR+L A++HLG+ +P Sbjct: 301 YEPYLMQMGFLQRTPRGRVLARRAYEHLGLPVP 333 >gi|210622016|ref|ZP_03292959.1| hypothetical protein CLOHIR_00905 [Clostridium hiranonis DSM 13275] gi|210154461|gb|EEA85467.1| hypothetical protein CLOHIR_00905 [Clostridium hiranonis DSM 13275] Length = 351 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 182/331 (54%), Positives = 246/331 (74%), Gaps = 1/331 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 D +++ + +D +I + LRP+TL+E+ GQ ++ L +FIEAA++R E LDHVL Sbjct: 18 FDENRIITSTMQMDDVEIENNLRPKTLDEYLGQEKSKEQLSIFIEAARSRNEQLDHVLLY 77 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+GVN R TSGP I KAGDLAA+LTNLE+ DVLFIDEIHR++ Sbjct: 78 GPPGLGKTTLAGIIANEMGVNLRITSGPAIEKAGDLAAILTNLEENDVLFIDEIHRINRS 137 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+ +L Sbjct: 138 VEEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRPGMLTNPLRDRFGVICKL 197 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 ++Y ++L IV+R + L G + D++A EIA RSRGTPRIA RLL+RVRD+A+V Sbjct: 198 DYYTNDELAQIVKRSSGLLGAGIDDKSAAEIARRSRGTPRIANRLLKRVRDYAQVRANGD 257 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT ++A AL L +D +G D +D L I FGGGPVG++T++A + E R+ IED+ Sbjct: 258 ITEDVAKDALELLGVDSLGLDYVDETLLKTIIEKFGGGPVGLDTLAASIGEDRNTIEDVY 317 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331 EPY+IQ GFI R RGR+ MP A++HL I Sbjct: 318 EPYLIQLGFINRGARGRMAMPKAYKHLNYPI 348 >gi|154498067|ref|ZP_02036445.1| hypothetical protein BACCAP_02048 [Bacteroides capillosus ATCC 29799] gi|150273057|gb|EDN00214.1| hypothetical protein BACCAP_02048 [Bacteroides capillosus ATCC 29799] Length = 351 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 182/328 (55%), Positives = 246/328 (75%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E L++ +++++D + LRP+TL E+ GQ +A NL+VFI+AAK R E LDHVL GPPG Sbjct: 14 EPLVTTSLTRDDENEGSLRPKTLSEYIGQKKAKGNLEVFIQAAKMRGEPLDHVLLHGPPG 73 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTL+ ++A E+GVN R TSGP I K GDLAALLTNL++ D+LF+DEIHRL+ VEEI Sbjct: 74 LGKTTLSGIIANEMGVNIRITSGPAIEKPGDLAALLTNLQENDILFVDEIHRLNRSVEEI 133 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF +D+++G+GPSA S++++L RFTLI ATTR G L+ PL+DRFG+ +RL Y Sbjct: 134 LYPAMEDFAIDIIIGKGPSANSIRLDLPRFTLIGATTRAGQLSAPLRDRFGVTLRLELYT 193 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 ++L IV R A + G+ + E A EIA RSRGTPRIA R+LRRVRDFA+V ITR+ Sbjct: 194 PDELALIVSRSAGILGVPIEAEGAMEIARRSRGTPRIANRMLRRVRDFAQVRAGGVITRD 253 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +AD AL L +D +G D +D R LT I ++ GGPVG+ET++A ++E +ED+ EPY+ Sbjct: 254 VADEALSALEVDYLGLDAVDRRMLTSIIEHYSGGPVGLETLAATINEEAVTLEDVYEPYL 313 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +Q GF+ RTPRGR + A++HLG+ +P Sbjct: 314 MQMGFLTRTPRGRCVTRRAYEHLGLPVP 341 >gi|126668398|ref|ZP_01739355.1| Holliday junction DNA helicase RuvB [Marinobacter sp. ELB17] gi|126627107|gb|EAZ97747.1| Holliday junction DNA helicase RuvB [Marinobacter sp. ELB17] Length = 358 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/330 (56%), Positives = 240/330 (72%), Gaps = 1/330 (0%) Query: 1 MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP L ++ GQ + +FI AA+ R EALDHVL Sbjct: 1 MIESDRLISAKTADYEDVQDRAIRPTLLADYVGQPSVREQMDIFISAARNRQEALDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GV ++TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIANEMGVAIKTTSGPVLEKAGDLAAMLTNLEAGDVLFIDEIHRLSA 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR GLLT+PL+DRFGI R Sbjct: 121 AVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGLLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY DL I+ R A+L+ + + + A E+A RSRGTPRIA RLLRRVRD+AEV Sbjct: 181 LEFYNNADLTRIILRSARLSSVHIDEAGAFEMARRSRGTPRIANRLLRRVRDYAEVRADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT IAD AL L +D GFD +D R L + F GGPVG+E+++A +SE R IED+ Sbjct: 241 RITANIADLALNMLKVDDQGFDHMDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EP++IQQGF+ RTPRGR++ A+QH G+ Sbjct: 301 LEPFLIQQGFMLRTPRGRMVTNHAYQHFGV 330 >gi|297183448|gb|ADI19580.1| holliday junction resolvasome, helicase subunit [uncultured Acidobacteria bacterium HF0770_27F21] Length = 344 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/318 (58%), Positives = 235/318 (73%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 VS+E LRPRTLEE+ GQ + NL+VFIEAA R E LDHVL GPPGLGKTTLA Sbjct: 11 VSEESRFEVTLRPRTLEEYVGQRKVVDNLRVFIEAASKRNEPLDHVLLFGPPGLGKTTLA 70 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A E+ + R+TSGPVI K GDLAA+LT++E+ VLFIDEIHRL +EE+LYPAMED Sbjct: 71 YIIAHEMDGDLRATSGPVIEKIGDLAAILTSVEENGVLFIDEIHRLPASIEELLYPAMED 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +Q+D+++GEGPSARSVK+ + RFTL+ +TTR LLT+PL+ RFGI RLNFY EDL I Sbjct: 131 YQIDIVIGEGPSARSVKLPIPRFTLVGSTTRAALLTSPLRSRFGIVFRLNFYTTEDLTKI 190 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V AK G+ + A EIA RSRGTPRIA RLLRRVRDFAEV I ++A +AL Sbjct: 191 VFNSAKKLGVPTDADGALEIASRSRGTPRIANRLLRRVRDFAEVDGDGMINADVARSALQ 250 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 +L +DKMGFD++D + + I +NF GGPVG+ TI+A + E + AIED+ EPY+IQ GF+ Sbjct: 251 KLEVDKMGFDEIDRQLMLTIMQNFSGGPVGLNTIAAAIGEDKAAIEDIYEPYLIQLGFLA 310 Query: 312 RTPRGRLLMPIAWQHLGI 329 RT RGR+ IA++H GI Sbjct: 311 RTSRGRVATEIAYEHFGI 328 >gi|152976838|ref|YP_001376355.1| Holliday junction DNA helicase B [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189045780|sp|A7GTA2|RUVB_BACCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|152025590|gb|ABS23360.1| Holliday junction DNA helicase RuvB [Bacillus cytotoxicus NVH 391-98] Length = 333 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GP+ARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPTARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V TI Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGDGTIAM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D ++L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKFLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A+QH G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYQHFGMEMP 331 >gi|317131996|ref|YP_004091310.1| Holliday junction DNA helicase RuvB [Ethanoligenens harbinense YUAN-3] gi|315469975|gb|ADU26579.1| Holliday junction DNA helicase RuvB [Ethanoligenens harbinense YUAN-3] Length = 348 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/328 (57%), Positives = 239/328 (72%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ + + ED D LRPRTL E+TGQ + NLK+FIEAAK R EALDHVL GPPGL Sbjct: 9 IVTPDYTAEDVDAEQSLRPRTLAEYTGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGL 68 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA V+A E+GVN R TSGP I K GDLAALLTNL D+LFIDE+HRLS VEE+L Sbjct: 69 GKTTLAGVIANEMGVNLRVTSGPAIEKQGDLAALLTNLAPHDILFIDEVHRLSRSVEEVL 128 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ LD+++G+GPSARS++++L RFTLI ATTR G LT+PL+DRFG+ +RL Y Sbjct: 129 YPAMEDYALDIILGKGPSARSIRLDLPRFTLIGATTRAGQLTSPLRDRFGVLMRLELYTK 188 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+L I+ R A + + A EIA R+RGTPR+A RLLRRVRDFA+V + IT+E Sbjct: 189 EELCGIITRSAGILQIDCEPGGAMEIAGRARGTPRVANRLLRRVRDFAQVIGSGVITQET 248 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL RL IDK+G D D R L M+ R++GGGP GIET++A + E +ED+ EPY++ Sbjct: 249 AGRALDRLEIDKLGLDATDRRMLGMLIRHYGGGPAGIETLAAAMGEEAVTLEDVCEPYLM 308 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 Q GF+ RTPRGR+ A+ HLG+ P Sbjct: 309 QVGFLMRTPRGRMATAAAYAHLGLTPPQ 336 >gi|50085686|ref|YP_047196.1| Holliday junction DNA helicase RuvB [Acinetobacter sp. ADP1] gi|68715457|sp|Q6F991|RUVB_ACIAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|49531662|emb|CAG69374.1| holliday junction helicase, subunit B [Acinetobacter sp. ADP1] Length = 334 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/332 (56%), Positives = 241/332 (72%), Gaps = 2/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+S ED +RP +L ++ GQ +++FI AA+ R EALDH L Sbjct: 1 MHDR--LISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +EDL IV R A L + +T A E+A RSRGTPRIA RLLRRVRD+A+V Sbjct: 179 EFYSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGE 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +DK G D LD RYL+M+ F GGP G+E ++A ++E +ED+I Sbjct: 239 VTHDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVI 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQQG++ RT RGR+ +A+ G+ P Sbjct: 299 EPYLIQQGYVMRTARGRIATNMAYLQFGLTPP 330 >gi|285019188|ref|YP_003376899.1| holliday junction resolvasome, helicase subunit protein [Xanthomonas albilineans GPE PC73] gi|283474406|emb|CBA16907.1| putative holliday junction resolvasome, helicase subunit protein [Xanthomonas albilineans] Length = 347 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 192/326 (58%), Positives = 241/326 (73%), Gaps = 1/326 (0%) Query: 5 EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E +++ + + ED + + +RP+ L+++ GQ L ++IEAAKAR EALDHVL GPP Sbjct: 5 ERIIASSATGEDEAVEASIRPKRLDDYLGQQPVREQLSIYIEAAKARGEALDHVLIFGPP 64 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ V+A ELGVN R TSGPVI KAGDLAALLTNL+ DVLF+DEIHRLS +VEE Sbjct: 65 GLGKTTLSHVIANELGVNLRVTSGPVIEKAGDLAALLTNLQPHDVLFVDEIHRLSPVVEE 124 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDFQ+D+M+GEGP+ARS+KI+L FTLI ATTR GLLT PL+DRFGI RL FY Sbjct: 125 VLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLAFY 184 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E+L IV+R A + G+A + EIA R+RGTPRIA RLLRRVRDFA+V I Sbjct: 185 TPEELARIVRRSAGILGIACDADGCAEIARRARGTPRIANRLLRRVRDFAQVRAGGHIDL 244 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +A AA L +D GFD+LD R L I F GGPVG+E+++A LSE R +ED+IEPY Sbjct: 245 AVAQAATQMLKVDAEGFDELDRRLLRTIIDYFDGGPVGVESLAASLSEERGTLEDVIEPY 304 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329 +IQQG++ RT RGR+ A+ HLG+ Sbjct: 305 LIQQGYLIRTARGRMATNKAYLHLGL 330 >gi|218899589|ref|YP_002448000.1| Holliday junction DNA helicase RuvB [Bacillus cereus G9842] gi|228902948|ref|ZP_04067089.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis IBL 4222] gi|228910256|ref|ZP_04074074.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis IBL 200] gi|228967496|ref|ZP_04128524.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar sotto str. T04001] gi|226725451|sp|B7IIT2|RUVB_BACC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|218540807|gb|ACK93201.1| Holliday junction DNA helicase RuvB [Bacillus cereus G9842] gi|228792211|gb|EEM39785.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar sotto str. T04001] gi|228849420|gb|EEM94256.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis IBL 200] gi|228856732|gb|EEN01251.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis IBL 4222] Length = 333 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + ED+D+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDSDLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G++IP Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 331 >gi|332982455|ref|YP_004463896.1| Holliday junction DNA helicase subunit RuvB [Mahella australiensis 50-1 BON] gi|332700133|gb|AEE97074.1| Holliday junction DNA helicase subunit RuvB [Mahella australiensis 50-1 BON] Length = 333 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 185/335 (55%), Positives = 249/335 (74%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR +++ ++Q D ++ + LRPRTL E+ GQ L++FI+AAK R EALDHVL Sbjct: 1 MSDR--IIAAELAQNDIELETALRPRTLSEYIGQNSVKEKLRIFIDAAKQRHEALDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GVN R TSGPVI +AGDLAA+LTN+ + DVLFIDEIHRL+ Sbjct: 59 YGPPGLGKTTLANIIANEMGVNIRITSGPVIERAGDLAAILTNMAEYDVLFIDEIHRLNR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEILYPAMED+ LD+++G+GP ARS++I+L FTLI ATTR GLLT PL+DRFG+ R Sbjct: 119 AVEEILYPAMEDYALDIVIGKGPGARSLRIDLPHFTLIGATTRAGLLTPPLRDRFGVINR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L Y I +LK IV R A L + + + ACEIA R+RGTPR+A RLL+RVRD+A++ Sbjct: 179 LEMYAINELKEIVIRSAYLLKVGIDERGACEIARRARGTPRVANRLLKRVRDYAQIKADG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT ++A A L L +D++G D++D + L+++ FGGGPVG++T+SA ++E D IED+ Sbjct: 239 IITYDVAKAGLDLLEVDELGLDEVDRKMLSIMIDKFGGGPVGLDTLSAAVNEQADTIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY++Q GFI RTPRGR+ +A++H+GI R Sbjct: 299 YEPYLLQLGFIDRTPRGRIATRLAYEHMGIPFEDR 333 >gi|228993159|ref|ZP_04153081.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus pseudomycoides DSM 12442] gi|228999209|ref|ZP_04158790.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus mycoides Rock3-17] gi|229006756|ref|ZP_04164390.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus mycoides Rock1-4] gi|228754617|gb|EEM04028.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus mycoides Rock1-4] gi|228760554|gb|EEM09519.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus mycoides Rock3-17] gi|228766618|gb|EEM15259.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus pseudomycoides DSM 12442] Length = 333 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/329 (57%), Positives = 243/329 (73%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V TI Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRSDGTIAM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESTTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+D+P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMDMP 331 >gi|16272266|ref|NP_438478.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae Rd KW20] gi|260581220|ref|ZP_05849039.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae RdAW] gi|1173331|sp|P44631|RUVB_HAEIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|1573279|gb|AAC21975.1| Holliday junction DNA helicase (ruvB) [Haemophilus influenzae Rd KW20] gi|260092145|gb|EEW76089.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae RdAW] Length = 335 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/315 (57%), Positives = 235/315 (74%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED +RP+ L ++ GQ + + +FI+AAK R +ALDH+L GPPGLGKTTLA +V Sbjct: 16 EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QL Sbjct: 76 ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY +EDL +IV R Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + +AA E+A RSRGTPRIA RLLRRVRD+A+V + I+ +A AL L Sbjct: 196 SAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGIISINVAKQALSMLD 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD LD + L+ + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315 Query: 315 RGRLLMPIAWQHLGI 329 RGR+ ++H G+ Sbjct: 316 RGRIATSQTYRHFGL 330 >gi|302391488|ref|YP_003827308.1| Holliday junction DNA helicase subunit RuvB [Acetohalobium arabaticum DSM 5501] gi|302203565|gb|ADL12243.1| Holliday junction DNA helicase subunit RuvB [Acetohalobium arabaticum DSM 5501] Length = 333 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/330 (54%), Positives = 243/330 (73%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR N S ++ D SL RP++L E+ GQ + +NL++FIEAAK R EALDHVL Sbjct: 1 MEDRIVSPDENTSDKELDSSL-RPKSLNEYIGQEKVKNNLEIFIEAAKGRGEALDHVLLY 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+GVN + TSGP I + GDLAA+LTNL DVLFIDEIHRL+ + Sbjct: 60 GPPGLGKTTLANIIAEEMGVNIKITSGPAIERPGDLAAILTNLNPNDVLFIDEIHRLNRM 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD+++G+GPSARSV+++L++FTL+ ATT+ G LT+PL+DRFG+ RL Sbjct: 120 VEEVLYPAMEDFALDIIIGDGPSARSVRLDLAQFTLVGATTKAGQLTSPLRDRFGVISRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 Y E+L+ IV R A++ + + D A E+A RSRGTPRIA RLL+RVRD+A+V Sbjct: 180 KLYSTEELQQIVYRSARVLNVKIDDAGALELAKRSRGTPRIANRLLKRVRDYAQVRADGV 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT E+A A L L +D++G D +D + L + FGGGPVG+ T+SA + E IED+ Sbjct: 240 ITEEVAKAGLEMLEVDELGLDDIDRKMLQTLINKFGGGPVGLNTLSAAVGEEEATIEDVY 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY++Q G++QRTPRGR+ +A++HL +D Sbjct: 300 EPYLLQIGYLQRTPRGRVATKLAYEHLDLD 329 >gi|120612873|ref|YP_972551.1| Holliday junction DNA helicase RuvB [Acidovorax citrulli AAC00-1] gi|166231458|sp|A1TUY9|RUVB_ACIAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|120591337|gb|ABM34777.1| Holliday junction DNA helicase RuvB [Acidovorax citrulli AAC00-1] Length = 354 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/316 (59%), Positives = 235/316 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QE+A LRP+ L+E+ GQ +A L++FI AA+ R EALDHVL GPPGLGKTTL+ + Sbjct: 26 QEEALERALRPKLLQEYVGQAKAREQLEIFIGAARKREEALDHVLLFGPPGLGKTTLSHI 85 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 86 IAAELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQ 145 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 146 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELSRIVT 205 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + + A EIA RSRGTPRIA RLLRRVRD+A+V IT++IA AL L Sbjct: 206 RSAGLLNAPIDAQGAFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITQDIAQRALAML 265 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L + F GGPVG++ I+A + E IED+IEPY+IQQG++QRT Sbjct: 266 DVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEEPGTIEDVIEPYLIQQGYLQRT 325 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR+ A++HLG+ Sbjct: 326 PRGRIATLAAFRHLGV 341 >gi|90408540|ref|ZP_01216697.1| Holliday junction DNA helicase [Psychromonas sp. CNPT3] gi|90310359|gb|EAS38487.1| Holliday junction DNA helicase [Psychromonas sp. CNPT3] Length = 333 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/333 (55%), Positives = 242/333 (72%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S +D+ + +RP+ L ++ GQ + + +++FIEAA+ R EALDH+L Sbjct: 1 MIEEDRLISAVEKNDDSFVDRAIRPKLLSDYEGQPQVNTQMEIFIEAARQRGEALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA EL VN ++TSGP++ KAGDLAALLTNLE+ DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLAHIVANELKVNIKTTSGPILEKAGDLAALLTNLEENDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPAMED+QLD+M+GEGP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +YE+ L IV R +K L + A EIA RSRGTPRIA RLLRRVRD+A+V Sbjct: 181 LEYYELIPLTKIVMRSSKHFNLNLDMSGATEIAKRSRGTPRIANRLLRRVRDYAQVKKES 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I +A+ AL L +D GFD +D + L I F GGPVG++ ++A + E ++ IED+ Sbjct: 241 MINANVANKALDMLNVDGQGFDYMDRKLLLAILDTFQGGPVGLDNLAAAIGEEKETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +EPY+IQQGF+QRTPRGR+ +QH G P Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYQHFGFSTP 333 >gi|196044785|ref|ZP_03112019.1| Holliday junction DNA helicase RuvB [Bacillus cereus 03BB108] gi|225866401|ref|YP_002751779.1| Holliday junction DNA helicase RuvB [Bacillus cereus 03BB102] gi|229186659|ref|ZP_04313820.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus BGSC 6E1] gi|254767410|sp|C1ESW4|RUVB_BACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|196024273|gb|EDX62946.1| Holliday junction DNA helicase RuvB [Bacillus cereus 03BB108] gi|225788653|gb|ACO28870.1| Holliday junction DNA helicase RuvB [Bacillus cereus 03BB102] gi|228596918|gb|EEK54577.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus BGSC 6E1] Length = 333 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R ++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSAIVERTGEVFEVEINSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|332290324|ref|YP_004421176.1| Holliday junction DNA helicase RuvB [Gallibacterium anatis UMN179] gi|330433220|gb|AEC18279.1| Holliday junction DNA helicase RuvB [Gallibacterium anatis UMN179] Length = 332 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 185/330 (56%), Positives = 244/330 (73%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S +E+ I +RP+ L+++ GQ + +FI+AAK R +ALDH+L Sbjct: 1 MIEADRIISPTAKEEEEYIDRAIRPKLLQDYVGQPHVREQMDIFIKAAKMRNDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY IEDL +IV R A L + ++AA EIA RSRGTPRI RLLRRVRD+A+V + Sbjct: 181 LEFYSIEDLTSIVVRSANCLSLQIDEQAAHEIARRSRGTPRIVNRLLRRVRDYADVKNDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ EIA AL L ID GFD +D + L I F GGPVG++ ++A + E ++ IED+ Sbjct: 241 FISVEIAKLALTMLDIDSEGFDFMDRKLLMAIIERFDGGPVGLDNLAAAIGEEKETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGF+QRTPRGR+ ++H G+ Sbjct: 301 LEPYLIQQGFLQRTPRGRIATLHTYRHFGV 330 >gi|255291935|dbj|BAH90423.1| Holliday junction DNA helicase RuvB [uncultured bacterium] Length = 356 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/321 (58%), Positives = 237/321 (73%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 ++E+A LRP+ L+E+ GQ +A L++FI AA+ R EALDHVL GPPGLGKTTL+ Sbjct: 27 AREEALERALRPKMLQEYVGQAKAREQLEIFIGAARKRGEALDHVLLFGPPGLGKTTLSH 86 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 87 IIAHELGVNLRQTSGPVLEKPRDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDY 146 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARS+K+++ FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 147 QIDIMIGEGPAARSIKLDVQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELTRIV 206 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L + E A EIA RSRGTPRIA RLLRRVRD+A+V I+R+IA AL Sbjct: 207 TRSAGLLQVETDAEGAFEIARRSRGTPRIANRLLRRVRDYADVKGRGQISRQIAHDALAM 266 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D GFD +D + L + F GGPVG++ I+A + E IED+IEPY+IQQG++QR Sbjct: 267 LDVDPEGFDVMDRKLLEAVIHRFDGGPVGLDNIAASIGEEPGTIEDVIEPYLIQQGYLQR 326 Query: 313 TPRGRLLMPIAWQHLGIDIPH 333 TPRGR+ A++HLG+ P Sbjct: 327 TPRGRVATLAAYRHLGVAPPQ 347 >gi|167750455|ref|ZP_02422582.1| hypothetical protein EUBSIR_01431 [Eubacterium siraeum DSM 15702] gi|167656606|gb|EDS00736.1| hypothetical protein EUBSIR_01431 [Eubacterium siraeum DSM 15702] gi|291557652|emb|CBL34769.1| Holliday junction DNA helicase, RuvB subunit [Eubacterium siraeum V10Sc8a] Length = 350 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/330 (57%), Positives = 241/330 (73%), Gaps = 3/330 (0%) Query: 3 DREG--LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 D EG ++ S ED D+ LRPR L E+ GQ + NL+V+I+AAK R E+LDHVL Sbjct: 12 DDEGARIVEPQFSAEDTDVEFSLRPRKLNEYIGQEKVKENLQVYIQAAKKRNESLDHVLL 71 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GVNF+ TSGP I K G+LAALLT L+ DVLF+DEIHRLS Sbjct: 72 YGPPGLGKTTLAGIIANEMGVNFKVTSGPAIEKPGELAALLTGLQAGDVLFVDEIHRLSR 131 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEILYPA+ED LD+M+G+GPSA+S++++L+RFTLI ATTR G LT PL+DRFG+ +R Sbjct: 132 QVEEILYPALEDCVLDIMIGKGPSAQSIRVDLNRFTLIGATTRAGQLTGPLRDRFGVIMR 191 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L Y ++L IV R + + + A EIA RSRGTPRIA RLL+RVRDFAEV Sbjct: 192 LEMYTPDELCDIVMRSSVILSIPCDRSGAMEIAKRSRGTPRIANRLLKRVRDFAEVMGNG 251 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT+E+AD AL RL IDK+G D LD R+LTMI + GGPVG+ET+++ L E +ED+ Sbjct: 252 KITKEMADIALNRLEIDKLGLDSLDKRFLTMIINGYNGGPVGLETLASALGEESVTLEDV 311 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GFI RTPRGR +A++HLG+ Sbjct: 312 CEPYLMQLGFISRTPRGRCATELAYKHLGL 341 >gi|229175094|ref|ZP_04302611.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus MM3] gi|228608390|gb|EEK65695.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus MM3] Length = 333 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + ED+D+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDSDLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G++IP Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 331 >gi|47566610|ref|ZP_00237432.1| Holliday junction DNA helicase RuvB [Bacillus cereus G9241] gi|229158035|ref|ZP_04286106.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus ATCC 4342] gi|47556640|gb|EAL14972.1| Holliday junction DNA helicase RuvB [Bacillus cereus G9241] gi|228625488|gb|EEK82244.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus ATCC 4342] Length = 333 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|291550304|emb|CBL26566.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus torques L2-14] Length = 332 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/317 (56%), Positives = 239/317 (75%), Gaps = 1/317 (0%) Query: 14 QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED+ I LRP+ L E+ GQ +A L ++IEAAKAR EALDHVLF GPPGLGKTTLA Sbjct: 12 EEDSKIEGQLRPQLLSEYIGQEKAKKTLSIYIEAAKARGEALDHVLFYGPPGLGKTTLAG 71 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+GVN + TSGP I K G++AA+L L++ DVLF+DEIHRL+ VEE+LYPAMED+ Sbjct: 72 IIANEMGVNMKITSGPAIEKPGEMAAILNGLQEHDVLFVDEIHRLNRQVEEVLYPAMEDY 131 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+M+G+GP ARSV++NL +FTL+ ATTR G+LT PL+DRFG+ L Y E+LKTI+ Sbjct: 132 AIDIMIGKGPGARSVRLNLPKFTLVGATTRAGMLTAPLRDRFGVVHHLELYNEEELKTII 191 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A + G+ + +E A E+A RSRGTPR+A RLL+RVRDFA+V + IT+E+A+ AL Sbjct: 192 LRSAHVLGVEIEEEGAMELARRSRGTPRLANRLLKRVRDFAQVKYDGVITKEVANYALDL 251 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +DK G D +D L + F GGPVG+ET++A +SE +ED+ EPY+++ GFIQR Sbjct: 252 LDVDKFGLDHIDRNILITMIEKFQGGPVGLETLAASISEDAGTLEDVYEPYLLKNGFIQR 311 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR++ +A+QHLGI Sbjct: 312 TPRGRVVTELAYQHLGI 328 >gi|228987673|ref|ZP_04147785.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772058|gb|EEM20512.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 333 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYKHFGMEMP 331 >gi|255320812|ref|ZP_05361987.1| holliday junction DNA helicase RuvB [Acinetobacter radioresistens SK82] gi|262379412|ref|ZP_06072568.1| Holliday junction DNA helicase RuvB [Acinetobacter radioresistens SH164] gi|255302189|gb|EET81431.1| holliday junction DNA helicase RuvB [Acinetobacter radioresistens SK82] gi|262298869|gb|EEY86782.1| Holliday junction DNA helicase RuvB [Acinetobacter radioresistens SH164] Length = 334 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/333 (55%), Positives = 243/333 (72%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+S + ED +RP +L+++ GQ + +FI AA+ R EALDH L Sbjct: 1 MQDR--LISGSEKPEDHFDRAIRPTSLDDYIGQPVVREQMGIFIGAARGRGEALDHTLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +EDL IV R A L + +T E + E+A R+RGTPRIA RLLRRVRD+A+V Sbjct: 179 EFYSVEDLTHIVTRSASLMDVPITQEGSREVARRARGTPRIANRLLRRVRDYAQVKGTGE 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T+E+A AL L +DK G D LD RYL+M+ F GGP G+E ++A ++E +ED+I Sbjct: 239 VTQEMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVI 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY+IQQG+ RT RGR+ +A+ G+ P Sbjct: 299 EPYLIQQGYAMRTARGRIATNMAYLQFGMTPPE 331 >gi|255656789|ref|ZP_05402198.1| Holliday junction DNA helicase RuvB [Clostridium difficile QCD-23m63] gi|296452381|ref|ZP_06894082.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium difficile NAP08] gi|296877730|ref|ZP_06901757.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium difficile NAP07] gi|296258711|gb|EFH05605.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium difficile NAP08] gi|296431263|gb|EFH17083.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium difficile NAP07] Length = 339 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/332 (54%), Positives = 245/332 (73%), Gaps = 1/332 (0%) Query: 3 DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 D +++ + ED DI + LRP+TLE++ GQ ++ L +FIEAAK+R E LDHVL G Sbjct: 6 DENRIITSTMKVEDIDIENSLRPKTLEDYLGQEKSKEQLSIFIEAAKSRNEQLDHVLLYG 65 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+GVN R TSGP I +AGDLAA+LTNL + DVLFIDEIHR++ V Sbjct: 66 PPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAAILTNLNENDVLFIDEIHRINRSV 125 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+ +L+ Sbjct: 126 EEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLTNPLRDRFGVICKLD 185 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y +++L IV R + + + A E+A RSRGTPRIA RLL+RVRDFA+V I Sbjct: 186 YYTVDELSKIVLRSSNILDAKIQSNGALELAKRSRGTPRIANRLLKRVRDFAQVRADGKI 245 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T ++A AL L +D +G D +D + L I F GGPVG++T++A + E R+ IED+ E Sbjct: 246 TDKVAKDALELLGVDSLGLDFVDEKLLMTIIEKFRGGPVGLDTLAASIGEDRNTIEDVYE 305 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 PY++Q GFI R PRGR+ MP+A++HL I P+ Sbjct: 306 PYLLQLGFINRGPRGRVAMPLAYEHLKIPYPN 337 >gi|126700421|ref|YP_001089318.1| Holliday junction DNA helicase RuvB [Clostridium difficile 630] gi|254976400|ref|ZP_05272872.1| Holliday junction DNA helicase RuvB [Clostridium difficile QCD-66c26] gi|255093786|ref|ZP_05323264.1| Holliday junction DNA helicase RuvB [Clostridium difficile CIP 107932] gi|255101976|ref|ZP_05330953.1| Holliday junction DNA helicase RuvB [Clostridium difficile QCD-63q42] gi|255307844|ref|ZP_05352015.1| Holliday junction DNA helicase RuvB [Clostridium difficile ATCC 43255] gi|255315537|ref|ZP_05357120.1| Holliday junction DNA helicase RuvB [Clostridium difficile QCD-76w55] gi|255518200|ref|ZP_05385876.1| Holliday junction DNA helicase RuvB [Clostridium difficile QCD-97b34] gi|255651316|ref|ZP_05398218.1| Holliday junction DNA helicase RuvB [Clostridium difficile QCD-37x79] gi|260684380|ref|YP_003215665.1| Holliday junction DNA helicase RuvB [Clostridium difficile CD196] gi|260688039|ref|YP_003219173.1| Holliday junction DNA helicase RuvB [Clostridium difficile R20291] gi|306521148|ref|ZP_07407495.1| Holliday junction DNA helicase RuvB [Clostridium difficile QCD-32g58] gi|123363077|sp|Q183N8|RUVB_CLOD6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|115251858|emb|CAJ69693.1| Holliday junction ATP-dependent DNA helicase RuvB [Clostridium difficile] gi|260210543|emb|CBA65073.1| holliday junction DNA helicase [Clostridium difficile CD196] gi|260214056|emb|CBE06220.1| holliday junction DNA helicase [Clostridium difficile R20291] Length = 339 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/332 (54%), Positives = 245/332 (73%), Gaps = 1/332 (0%) Query: 3 DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 D +++ + ED DI + LRP+TLE++ GQ ++ L +FIEAAK+R E LDHVL G Sbjct: 6 DENRIITSTMKMEDIDIENSLRPKTLEDYLGQEKSKEQLSIFIEAAKSRNEQLDHVLLYG 65 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+GVN R TSGP I +AGDLAA+LTNL + DVLFIDEIHR++ V Sbjct: 66 PPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAAILTNLNENDVLFIDEIHRINRSV 125 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+ +L+ Sbjct: 126 EEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLTNPLRDRFGVICKLD 185 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y +++L IV R + + + A E+A RSRGTPRIA RLL+RVRDFA+V I Sbjct: 186 YYTVDELSKIVLRSSSILDAEIQSNGALELAKRSRGTPRIANRLLKRVRDFAQVRADGKI 245 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T ++A AL L +D +G D +D + L I F GGPVG++T++A + E R+ IED+ E Sbjct: 246 TDKVAKDALELLGVDSLGLDFVDEKLLMTIIEKFRGGPVGLDTLAASIGEDRNTIEDVYE 305 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 PY++Q GFI R PRGR+ MP+A++HL I P+ Sbjct: 306 PYLLQLGFINRGPRGRVAMPLAYEHLKIPYPN 337 >gi|303241603|ref|ZP_07328102.1| Holliday junction DNA helicase RuvB [Acetivibrio cellulolyticus CD2] gi|302590823|gb|EFL60572.1| Holliday junction DNA helicase RuvB [Acetivibrio cellulolyticus CD2] Length = 330 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/329 (57%), Positives = 242/329 (73%), Gaps = 2/329 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+ NV++ED D S LRPR L E+ GQ + NL VFIEAAK R EALDHVL Sbjct: 1 MEDR--LIGCNVNEEDVDESSLRPRRLNEYIGQKKVKENLVVFIEAAKKRKEALDHVLLY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A ELGVN R TSGP I K GDLAA+LTNL + DVLFIDEIHRL+ Sbjct: 59 GPPGLGKTTLASIIASELGVNIRITSGPAIEKPGDLAAILTNLGNYDVLFIDEIHRLNRS 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT+PL+DRFG+ +L Sbjct: 119 VEEILYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTSPLRDRFGVINKL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 Y ++LK IV+R A + + + ++A+ EIA RSRGTPRIA R+L+RVRDFA+V Sbjct: 179 EMYTPKELKAIVERSAGILSIGIEEDASEEIARRSRGTPRIANRILKRVRDFAQVKGEGL 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT+EIA +L L ID +G D +D L I F GGPVG++T++A E + IED+ Sbjct: 239 ITKEIASMSLDALEIDPIGLDGVDRSLLMSIIDKFAGGPVGLDTLAATTGEETNTIEDVY 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GFI +TPRGR+ +A+ H G+ Sbjct: 299 EPYLLQLGFINKTPRGRVATKLAYDHFGL 327 >gi|196039287|ref|ZP_03106593.1| Holliday junction DNA helicase RuvB [Bacillus cereus NVH0597-99] gi|228917057|ref|ZP_04080616.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|196029914|gb|EDX68515.1| Holliday junction DNA helicase RuvB [Bacillus cereus NVH0597-99] gi|228842585|gb|EEM87674.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 333 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R ++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSAIVERTGEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|326318905|ref|YP_004236577.1| Holliday junction DNA helicase RuvB [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375741|gb|ADX48010.1| Holliday junction DNA helicase RuvB [Acidovorax avenae subsp. avenae ATCC 19860] Length = 353 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/316 (58%), Positives = 235/316 (74%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QE+A LRP+ L+E+ GQ +A L++FI AA+ R EALDHVL GPPGLGKTTL+ + Sbjct: 25 QEEALERALRPKLLQEYVGQAKAREQLEIFIGAARKREEALDHVLLFGPPGLGKTTLSHI 84 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGVN R TSGPV+ K DLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 85 IAAELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQ 144 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+K++L FTL+ ATTR G+LTNPL+DRFGI RL FY E+L IV Sbjct: 145 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELSRIVT 204 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + + + EIA RSRGTPRIA RLLRRVRD+A+V IT++IA AL L Sbjct: 205 RSAGLLNAPIDAQGSFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITQDIAQRALAML 264 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L + F GGPVG++ I+A + E IED+IEPY+IQQG++QRT Sbjct: 265 DVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEEPGTIEDVIEPYLIQQGYLQRT 324 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR+ A++HLG+ Sbjct: 325 PRGRIATLAAFRHLGV 340 >gi|229198548|ref|ZP_04325251.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus m1293] gi|228584933|gb|EEK43048.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus m1293] Length = 333 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R ++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSEIVERTGEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|324328323|gb|ADY23583.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 333 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R ++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSAIVERTGEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|306821135|ref|ZP_07454751.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550828|gb|EFM38803.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 334 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/324 (54%), Positives = 241/324 (74%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 +++ +ED + LRP+TL E+ GQ +A L +FI+A+K+R E+LDHVL GPPGLG Sbjct: 9 IINTAFKKEDEGETDLRPKTLSEYIGQKKAVDQLDIFIKASKSRNESLDHVLLYGPPGLG 68 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTL+ ++A E+ N + TSGP I +AGDLAALLTNL++ DVLFIDEIHR++ VEE+LY Sbjct: 69 KTTLSHIIANEMNSNIKITSGPAIERAGDLAALLTNLQEGDVLFIDEIHRVNRSVEEVLY 128 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED+ +D+++G+GPSARS+++++ +FTLI ATTR G+LT+PL+DRFGI + L Y + Sbjct: 129 PAMEDYCIDIIIGKGPSARSIRLDIPKFTLIGATTRTGMLTSPLRDRFGIILNLELYGTD 188 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 DL I+ R A + + + +AA EIA RSRGTPRIA R+L+RVRD+A+V IT EIA Sbjct: 189 DLLKIILRSANILNIPIKKDAAIEIAKRSRGTPRIANRMLKRVRDYAQVLGDGVITNEIA 248 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D ALL L ID +G D LD R L + RNF GGPVGI+TISA + E ++ IED+ EP++IQ Sbjct: 249 DKALLMLGIDSLGLDSLDTRILKTMIRNFDGGPVGIDTISAAVGEDKETIEDVCEPFLIQ 308 Query: 307 QGFIQRTPRGRLLMPIAWQHLGID 330 GF+ RTPRGR++ + H GI+ Sbjct: 309 NGFLIRTPRGRIVSDAVYSHFGIE 332 >gi|229086982|ref|ZP_04219139.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock3-44] gi|228696358|gb|EEL49186.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock3-44] Length = 333 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 243/329 (73%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V TI Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRSDGTIAM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESTTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|299769121|ref|YP_003731147.1| Holliday junction DNA helicase RuvB [Acinetobacter sp. DR1] gi|298699209|gb|ADI89774.1| Holliday junction DNA helicase RuvB [Acinetobacter sp. DR1] Length = 334 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/333 (55%), Positives = 241/333 (72%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+S ED +RP +L ++ GQ +++FI AA+ R EALDH L Sbjct: 1 MQDR--LISGAEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +EDL IV R A L + +T E A E+A R+RGTPRIA RLLRRVRD+A+V Sbjct: 179 EFYSVEDLTHIVSRSANLMNVPITVEGAEEVARRARGTPRIANRLLRRVRDYAQVKGTGE 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T E+A AL L +DK G D LD RYL+M+ F GGP G+E ++A ++E +ED+I Sbjct: 239 VTHEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVI 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY+IQQG++ RT RGR+ ++ G+ P Sbjct: 299 EPYLIQQGYVMRTARGRIATNQSYLQFGMTPPE 331 >gi|226311453|ref|YP_002771347.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] gi|254767414|sp|C0ZAN4|RUVB_BREBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226094401|dbj|BAH42843.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] Length = 332 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/327 (56%), Positives = 237/327 (72%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD + + +EDA LRPR L E+ GQ NLK+FIEAAK R E+LDHVL G Sbjct: 1 MDSRIITTHMNWEEDAAELSLRPRYLNEYIGQQHVKENLKIFIEAAKMRKESLDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTL+Q++A ELGVN R+TSGP I + GDLAA+LTNL++ DVLFIDEIHRL+ V Sbjct: 61 PPGLGKTTLSQIIANELGVNIRTTSGPAIERPGDLAAILTNLQEGDVLFIDEIHRLNRSV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G+L+ PL+DRFG+ RL Sbjct: 121 EEVLYPAMEDFALDIIIGKGPSARSVRLDLPPFTLVGATTRAGMLSAPLRDRFGVVNRLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY + +L IV R A + + + + A EIA RSRGTPR+A RLL+RVRDFA+V I Sbjct: 181 FYTVPELTFIVSRAADILQVVIREGGAEEIARRSRGTPRVANRLLKRVRDFAQVKGEGVI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T EIA AL RL +D G D +D + L I F GGPVG++TI+A + E +ED+ E Sbjct: 241 TTEIAKEALERLQVDACGLDHIDHKLLLAIIDRFDGGPVGLDTIAATIGEESQTVEDVCE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328 PY++Q GF+QRTPRGR+L P A+QH G Sbjct: 301 PYLMQIGFMQRTPRGRVLTPSAYQHFG 327 >gi|169632719|ref|YP_001706455.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii SDF] gi|169795064|ref|YP_001712857.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AYE] gi|184159150|ref|YP_001847489.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii ACICU] gi|213158274|ref|YP_002320325.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB0057] gi|215482613|ref|YP_002324805.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB307-0294] gi|239501032|ref|ZP_04660342.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB900] gi|260556548|ref|ZP_05828766.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii ATCC 19606] gi|301344816|ref|ZP_07225557.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB056] gi|301510229|ref|ZP_07235466.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB058] gi|301595122|ref|ZP_07240130.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB059] gi|332851088|ref|ZP_08433197.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii 6013150] gi|332869663|ref|ZP_08438851.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii 6013113] gi|332875978|ref|ZP_08443764.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii 6014059] gi|172044075|sp|A3M7W1|RUVB_ACIBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226725449|sp|B7GYB5|RUVB_ACIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226725450|sp|B7I5A9|RUVB_ACIB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238688102|sp|B0VDI5|RUVB_ACIBY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238688252|sp|B0VT89|RUVB_ACIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238690990|sp|B2HWT3|RUVB_ACIBC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|169147991|emb|CAM85854.1| holliday junction helicase, subunit B [Acinetobacter baumannii AYE] gi|169151511|emb|CAP00276.1| holliday junction helicase, subunit B [Acinetobacter baumannii] gi|183210744|gb|ACC58142.1| Holliday junction resolvasome, helicase subunit [Acinetobacter baumannii ACICU] gi|193078071|gb|ABO13005.2| holliday junction helicase subunit B [Acinetobacter baumannii ATCC 17978] gi|213057434|gb|ACJ42336.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB0057] gi|213988745|gb|ACJ59044.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB307-0294] gi|260409807|gb|EEX03107.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii ATCC 19606] gi|322509063|gb|ADX04517.1| ruvB [Acinetobacter baumannii 1656-2] gi|323519044|gb|ADX93425.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii TCDC-AB0715] gi|332730252|gb|EGJ61577.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii 6013150] gi|332732565|gb|EGJ63798.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii 6013113] gi|332735844|gb|EGJ66885.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii 6014059] Length = 334 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/333 (55%), Positives = 240/333 (72%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+S ED +RP +L ++ GQ +++FI AA+ R EALDH L Sbjct: 1 MQDR--LISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +EDL IV R A L + +T E A E+A RSRGTPRIA RLLRRVRD+A+V Sbjct: 179 EFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGE 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + E+A AL L +DK G D LD RYL+M+ F GGP G+E ++A ++E +ED+I Sbjct: 239 VNHEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVI 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY+IQQG++ RT RGR+ ++ G+ P Sbjct: 299 EPYLIQQGYVMRTARGRIATNQSYLQFGMTPPE 331 >gi|73667298|ref|YP_303314.1| Holliday junction DNA helicase B [Ehrlichia canis str. Jake] gi|97190039|sp|Q3YRD9|RUVB_EHRCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|72394439|gb|AAZ68716.1| Holliday junction DNA helicase subunit RuvB [Ehrlichia canis str. Jake] Length = 329 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 185/324 (57%), Positives = 240/324 (74%), Gaps = 3/324 (0%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 + +L ED +RP L+EF GQ +NLK+FI AA R E +DHVL GPPG Sbjct: 2 KNILQSTECLEDQQNVSIRPNLLDEFIGQSSVVNNLKIFINAAYTRKEPMDHVLLYGPPG 61 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+ +D+LFIDEIHRL+ +EEI Sbjct: 62 LGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQAKDILFIDEIHRLNRNIEEI 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LY AMEDF LD++VGEG AR+++++L +FTL+ ATTR+GLL+NPL+DRFGIPI L FY Sbjct: 122 LYSAMEDFCLDIIVGEGCGARTLRVDLPKFTLVGATTRIGLLSNPLRDRFGIPIHLEFYS 181 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITR 243 E+L ++QR AK+ ++D A EI++R+RGTPRIA RLLRR+RDF EV H KTIT Sbjct: 182 TEELIKVIQRAAKVIKTDISDSGAQEISLRARGTPRIALRLLRRIRDFIEVTEHNKTITD 241 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 AD ALLRL IDK+G D+ D++YL I + P GI+TIS+GLSE IE+ IEPY Sbjct: 242 TFADKALLRLGIDKLGLDRQDIQYLKFIHDS--NNPTGIDTISSGLSEDTGNIEETIEPY 299 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327 +I+ FIQRTPRGR++ A +L Sbjct: 300 LIKINFIQRTPRGRVITQKAISYL 323 >gi|312897340|ref|ZP_07756766.1| Holliday junction DNA helicase RuvB [Megasphaera micronuciformis F0359] gi|310621558|gb|EFQ05092.1| Holliday junction DNA helicase RuvB [Megasphaera micronuciformis F0359] Length = 340 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/312 (60%), Positives = 237/312 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+E+ GQ +A NL+VFI AAK R EALDHVL GPPGLGKTTLA ++A E GV Sbjct: 21 LRPHYLKEYIGQEKAKRNLEVFIAAAKMRKEALDHVLLYGPPGLGKTTLAGIIANEAGVG 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGP I +AGDLAALLTNL++RDVLFIDEIHRLS VEE+LY AMED+ LD+++G+G Sbjct: 81 FRITSGPAIERAGDLAALLTNLQERDVLFIDEIHRLSHSVEEVLYAAMEDYALDIVIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV+I+L FTLI ATT+VG L +PL+DRFG+ RL FY+ E+L I++R A + + Sbjct: 141 PSARSVRIDLPPFTLIGATTQVGRLASPLRDRFGVISRLEFYKPEELVLIIERTADILDM 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRIA RLL+RVRDFA+VA A IT+ IA AL RL +D G D Sbjct: 201 RIERDGALEIAGRSRGTPRIANRLLKRVRDFAQVADAPAITKNIASEALNRLEVDACGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D R LT I F GGPVG++TI+A +SE DA+ED+ EP+++Q GF+ RTPRGR+ Sbjct: 261 RTDRRVLTAIIEKFDGGPVGLDTIAAAISESVDAVEDVYEPFLMQLGFLNRTPRGRVATA 320 Query: 322 IAWQHLGIDIPH 333 A++HLG+ +P Sbjct: 321 AAYRHLGLAVPQ 332 >gi|90417111|ref|ZP_01225039.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium HTCC2207] gi|90331127|gb|EAS46383.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium HTCC2207] Length = 330 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 185/322 (57%), Positives = 241/322 (74%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +V++E D +L RP +L+++ GQ L +FIEAA+ R+E LDH L GPPGLGKTTL Sbjct: 2 SVAEERFDRAL-RPESLKDYVGQPVVVEQLSIFIEAARKRSEPLDHTLVFGPPGLGKTTL 60 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+ V ++TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS +VEEILYPAME Sbjct: 61 AHIIANEMQVALKTTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHRLSPVVEEILYPAME 120 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+QLD+++GEGP+ARS+K++L FTL+ ATTR GLLT PL+DRFGI RL FY DL Sbjct: 121 DYQLDIVIGEGPAARSIKLDLPPFTLVGATTRAGLLTAPLRDRFGIVQRLEFYSETDLTH 180 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IVQR + +++ + A EIA RSRGTPRIA RLLRRVRD+AEV +I+ EIADAAL Sbjct: 181 IVQRAGAILNVSIDAKGAAEIARRSRGTPRIANRLLRRVRDYAEVKSDGSISAEIADAAL 240 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 LA+D+ GFD D R L + F GGPVG+++++A +SE R IED++EPY+IQQG++ Sbjct: 241 NMLAVDQRGFDHQDRRLLLTLMEKFEGGPVGVDSLAAAMSEERGTIEDVLEPYLIQQGYL 300 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 RT RGR+ +A+++ G+ P Sbjct: 301 MRTSRGRMATRMAYEYFGLQRP 322 >gi|269468528|gb|EEZ80182.1| Holliday junction resolvasome, helicase subunit [uncultured SUP05 cluster bacterium] Length = 341 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/330 (54%), Positives = 244/330 (73%), Gaps = 1/330 (0%) Query: 1 MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++++ L+S ++ ED ++ +RP +L E+ GQ + S + +FIEAAK R + LDH L Sbjct: 1 MIEQDSLVSAQDQDNEDIVMTSVRPSSLSEYIGQDDVKSQMALFIEAAKKRGDVLDHSLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA V+A ++G + T+GPV+ ++GDLAA+LT LE D+LFIDEIHRL+ Sbjct: 61 YGPPGLGKTTLAHVIAHQMGAGLKQTAGPVLERSGDLAAILTKLEPYDILFIDEIHRLNP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEEILYPA+EDF+LD+MVGEG +A SV++ L FTLI ATTR G+LT+PL+DRFGI R Sbjct: 121 VVEEILYPALEDFKLDIMVGEGVAAHSVQLELPPFTLIGATTRAGMLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY ++DLK IV+R A + G+ + A EIA RSRGTPRIA RLLRRVRDFA + Sbjct: 181 LQFYNVKDLKKIVERSANILGIEIESNGALEIAKRSRGTPRIANRLLRRVRDFATIKTNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I ++IA+ AL L +D++G +QLD YL +I + F GGPVG++T+S + E R +ED+ Sbjct: 241 IIHQQIANEALAVLKVDELGLEQLDRDYLHIITQKFSGGPVGLDTLSTAIGEERGTLEDM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EPY+IQQGF+ RTPRGR +A+ HLG+ Sbjct: 301 VEPYLIQQGFVMRTPRGRSATDLAYSHLGL 330 >gi|229032071|ref|ZP_04188053.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus AH1271] gi|228729263|gb|EEL80258.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus AH1271] Length = 333 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + ED+D+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDSDLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|229019644|ref|ZP_04176454.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus AH1273] gi|229025882|ref|ZP_04182278.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus AH1272] gi|228735434|gb|EEL86033.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus AH1272] gi|228741647|gb|EEL91837.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus AH1273] Length = 333 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 242/329 (73%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESGYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V TI Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRSDGTIAM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|148359112|ref|YP_001250319.1| Holliday junction DNA helicase RuvB [Legionella pneumophila str. Corby] gi|296107160|ref|YP_003618860.1| holliday junction DNA helicase RuvB [Legionella pneumophila 2300/99 Alcoy] gi|148280885|gb|ABQ54973.1| Holliday junction DNA helicase RuvB [Legionella pneumophila str. Corby] gi|295649061|gb|ADG24908.1| holliday junction DNA helicase RuvB [Legionella pneumophila 2300/99 Alcoy] Length = 318 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 178/307 (57%), Positives = 231/307 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L E+ GQ S +++FI AA+ R + LDHVL GPPGLGKTTLA ++A E+GVN Sbjct: 5 IRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKTTLANIIAHEMGVN 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPVI +AGD+AA+LTNL+ DVLFIDEIHRLS ++EEILYPAMED++LD+M+GEG Sbjct: 65 IRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEG 124 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K+ L FTLI ATTR GLLT+PL+DRFGI RL +Y ++ L IV R A L G+ Sbjct: 125 PAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSLTKIVARSAHLLGV 184 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 E A EIA+RSRGTPRIA RLLRRVRD++EV IT ++A AL L +D+ GFD Sbjct: 185 PTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQALEMLEVDQHGFD 244 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +F GGPVGI++I+A + E + IED++EP++IQQGF+ RTPRGR+ Sbjct: 245 LMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIATS 304 Query: 322 IAWQHLG 328 A+QH G Sbjct: 305 KAYQHFG 311 >gi|307610274|emb|CBW99838.1| hypothetical protein LPW_15991 [Legionella pneumophila 130b] Length = 318 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 178/307 (57%), Positives = 231/307 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L E+ GQ S +++FI AA+ R + LDHVL GPPGLGKTTLA ++A E+GVN Sbjct: 5 IRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKTTLANIIAHEMGVN 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPVI +AGD+AA+LTNL+ DVLFIDEIHRLS ++EEILYPAMED++LD+M+GEG Sbjct: 65 IRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEG 124 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K+ L FTLI ATTR GLLT+PL+DRFGI RL +Y ++ L IV R A L G+ Sbjct: 125 PAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSLTQIVARSAHLLGV 184 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 E A EIA+RSRGTPRIA RLLRRVRD++EV IT ++A AL L +D+ GFD Sbjct: 185 PTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQALEMLEVDQHGFD 244 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +F GGPVGI++I+A + E + IED++EP++IQQGF+ RTPRGR+ Sbjct: 245 LMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIATS 304 Query: 322 IAWQHLG 328 A+QH G Sbjct: 305 KAYQHFG 311 >gi|226952124|ref|ZP_03822588.1| Holliday junction helicase, subunit B [Acinetobacter sp. ATCC 27244] gi|226837133|gb|EEH69516.1| Holliday junction helicase, subunit B [Acinetobacter sp. ATCC 27244] Length = 332 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 185/333 (55%), Positives = 242/333 (72%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+S ED +RP +L ++ GQ +++FI AA+ R EALDH L Sbjct: 1 MQDR--LISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLVAATTRAGLLTSPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +EDL IV R A L + +T E + EIA R+RGTPRIA RLLRRVRD+A+V Sbjct: 179 EFYSVEDLTHIVTRSANLMDVPITHEGSTEIARRARGTPRIANRLLRRVRDYAQVKGTGE 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T+++A AL L +DK G D LD RYL+M+ F G P G+E ++A ++E +ED+I Sbjct: 239 VTQDMAQRALDMLNVDKAGLDTLDRRYLSMLLERFEGRPTGVEALAAAMAEDSGTLEDVI 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY+IQQG++ RT RGR+ +A+ G+ P Sbjct: 299 EPYLIQQGYVMRTARGRIATNMAYLQFGMTPPE 331 >gi|262368600|ref|ZP_06061929.1| Holliday junction helicase [Acinetobacter johnsonii SH046] gi|262316278|gb|EEY97316.1| Holliday junction helicase [Acinetobacter johnsonii SH046] Length = 336 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 185/333 (55%), Positives = 243/333 (72%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+ + ED +RP +L+++ GQ +++FI AA+ R EALDH L Sbjct: 1 MQDR--LIGGSEKPEDHIDRAIRPTSLDDYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY + DL IV R A L + +T E + EIA RSRGTPRIA RLLRRVRD+A+V Sbjct: 179 EFYSVTDLTHIVTRSANLMDVPITREGSAEIARRSRGTPRIANRLLRRVRDYAQVKGTGE 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T+++A AL L +DK G D LD RYL+M+ F GGP G+E ++A ++E +ED+I Sbjct: 239 VTQDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPGGVEALAAAMAEDSGTLEDVI 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY+IQQG++ RT RGR+ +A+ G+ P Sbjct: 299 EPYLIQQGYVMRTARGRIATNMAYLQFGMTPPE 331 >gi|57239404|ref|YP_180540.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str. Welgevonden] gi|58579374|ref|YP_197586.1| Holliday junction DNA helicase B [Ehrlichia ruminantium str. Welgevonden] gi|58617429|ref|YP_196628.1| Holliday junction DNA helicase B [Ehrlichia ruminantium str. Gardel] gi|81311314|sp|Q5FG39|RUVB_EHRRG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|81819219|sp|Q5HAK4|RUVB_EHRRW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|57161483|emb|CAH58409.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str. Welgevonden] gi|58417041|emb|CAI28154.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str. Gardel] gi|58418000|emb|CAI27204.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str. Welgevonden] Length = 331 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/328 (56%), Positives = 242/328 (73%), Gaps = 3/328 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ L S ++ +IS+ RP L+EF GQ SNLK+FI+AA R E +DH+L Sbjct: 1 MFMKDILQSSECIEDQQNISM-RPNLLDEFIGQSSVVSNLKIFIDAAYERKEPIDHILLY 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+ RDVLFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQARDVLFIDEIHRLNRN 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILY AMEDF LD++VGEG AR++++++ FTLI ATTR+GLL+NPL+DRFGIP+ L Sbjct: 120 IEEILYSAMEDFSLDIIVGEGCGARTLRVDIPPFTLIGATTRIGLLSNPLRDRFGIPMHL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E+L +++R AK+ +++ A EI++RSRGTPRIA RLLRR+RDF V T Sbjct: 180 EFYSTEELTKVIKRAAKVIHTNISNNGAEEISLRSRGTPRIALRLLRRIRDFISVTKQDT 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT E AD ALLRL IDK+G D+ D++YL I P+GI+TIS+ LSE IE+ I Sbjct: 240 ITHEFADQALLRLGIDKLGLDRQDIKYLQFIYE--ANNPIGIDTISSALSEDTGNIEETI 297 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EPY+I+ FIQRTPRGR++ A +L Sbjct: 298 EPYLIKINFIQRTPRGRVITQKAISYLN 325 >gi|292490336|ref|YP_003525775.1| Holliday junction DNA helicase RuvB [Nitrosococcus halophilus Nc4] gi|291578931|gb|ADE13388.1| Holliday junction DNA helicase RuvB [Nitrosococcus halophilus Nc4] Length = 348 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/326 (57%), Positives = 242/326 (74%), Gaps = 1/326 (0%) Query: 6 GLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 GL+S + ++A + LRP L ++ GQ + ++VFI AA+AR EALDHVL GPPG Sbjct: 6 GLVSPQGASDEAVVEPSLRPAKLADYVGQPQVQEQMEVFIPAARARGEALDHVLIFGPPG 65 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTL+ +VA ELGVN R TSGPV+ + GDLAALLTNLE RDVLFIDEIHRLS +VEE+ Sbjct: 66 LGKTTLSHIVANELGVNLRQTSGPVLERPGDLAALLTNLEPRDVLFIDEIHRLSPVVEEV 125 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED Q+D+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY+ Sbjct: 126 LYPAMEDRQIDIMIGEGPAARSIKLDLVPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYD 185 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E L IV+R A++ G+ + A E+A RSRGTPRIA RLLRRVRD+AEV +T E Sbjct: 186 VEHLVLIVERTARILGMVMEAGGALEVARRSRGTPRIANRLLRRVRDYAEVKGDGRVTHE 245 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A AL L +D GFD +D + L + F GGPVG+++++A +SE R IED+IEP++ Sbjct: 246 VAKKALDLLDVDSNGFDTMDRKLLLAMIEKFDGGPVGVDSLAAAISEERGTIEDVIEPFL 305 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330 IQQGF+ RTPRGR+ + H G++ Sbjct: 306 IQQGFVMRTPRGRMATRHTYLHFGLE 331 >gi|163942170|ref|YP_001647054.1| Holliday junction DNA helicase B [Bacillus weihenstephanensis KBAB4] gi|229013637|ref|ZP_04170768.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus mycoides DSM 2048] gi|229062115|ref|ZP_04199440.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus AH603] gi|229076051|ref|ZP_04209022.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock4-18] gi|229098894|ref|ZP_04229830.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock3-29] gi|229105058|ref|ZP_04235710.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock3-28] gi|229117920|ref|ZP_04247282.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock1-3] gi|229135244|ref|ZP_04264042.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus BDRD-ST196] gi|229169163|ref|ZP_04296878.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus AH621] gi|229470532|sp|A9VIP6|RUVB_BACWK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|163864367|gb|ABY45426.1| Holliday junction DNA helicase RuvB [Bacillus weihenstephanensis KBAB4] gi|228614391|gb|EEK71501.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus AH621] gi|228648222|gb|EEL04259.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus BDRD-ST196] gi|228665577|gb|EEL21057.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock1-3] gi|228678368|gb|EEL32593.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock3-28] gi|228684567|gb|EEL38509.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock3-29] gi|228707085|gb|EEL59287.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus Rock4-18] gi|228717267|gb|EEL68942.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus AH603] gi|228747696|gb|EEL97568.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus mycoides DSM 2048] Length = 333 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 242/329 (73%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESGYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V TI Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRSDGTIAM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|28871122|ref|NP_793741.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. tomato str. DC3000] gi|213969186|ref|ZP_03397325.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. tomato T1] gi|28854372|gb|AAO57436.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. tomato str. DC3000] gi|213926184|gb|EEB59740.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. tomato T1] Length = 312 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 182/295 (61%), Positives = 230/295 (77%) Query: 40 LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99 +++FI+AA+ R+EALDH L GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+ Sbjct: 1 MELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAI 60 Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 LTNLE DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L FTL+ A Sbjct: 61 LTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGA 120 Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219 TTR G+LTNPL+DRFGI RL FY I DL TIV R A + GL + A EIA R+RGTP Sbjct: 121 TTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVARSAGILGLVIEPAGAFEIARRARGTP 180 Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279 RIA RLLRRVRDFA+V ITR+ AD AL L +D+ GFD D R L + F GGP Sbjct: 181 RIANRLLRRVRDFAQVRGNGQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGP 240 Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 VG+++++A +SE R IED++EPY+IQQG+I RTPRGR++ A+ H G++IP R Sbjct: 241 VGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPTR 295 >gi|323142289|ref|ZP_08077121.1| Holliday junction DNA helicase RuvB [Phascolarctobacterium sp. YIT 12067] gi|322413173|gb|EFY04060.1| Holliday junction DNA helicase RuvB [Phascolarctobacterium sp. YIT 12067] Length = 335 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 183/312 (58%), Positives = 232/312 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E+ GQ + NL +FI+AA AR EALDHVL GPPGLGKTTLA ++A EL VN Sbjct: 22 LRPRLLNEYIGQTQVKDNLSIFIKAAAARHEALDHVLLFGPPGLGKTTLANIIANELNVN 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I + GDLAA+LTNL D DVLFIDEIHRLS VEEILY AMEDF LD+++G+G Sbjct: 82 IRVTSGPAIERQGDLAAILTNLGDNDVLFIDEIHRLSKTVEEILYSAMEDFALDIIIGKG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+++L FTLI ATTR+G + PL+DRFG+ L FY+ E+L+ I+ R A++ + Sbjct: 142 PAARSVRLDLPHFTLIGATTRLGAIAAPLRDRFGVQCCLEFYKPEELQFIITRAAEILNV 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A EIA RSRGTPRIA RLL+RVRDFA+V + I R++AD AL +L +D+ GFD Sbjct: 202 KIDKEGAMEIARRSRGTPRIANRLLKRVRDFAQVLGVEVIDRQLADEALAKLEVDRYGFD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D + LT I + FGGGPVGIETI+A +SE IED+IEPY++QQG + RT RGR+ Sbjct: 262 RNDRKILTTIVKTFGGGPVGIETIAAAVSEESSTIEDVIEPYLMQQGMLNRTSRGRMATR 321 Query: 322 IAWQHLGIDIPH 333 +++LGI P Sbjct: 322 ETYRYLGIPFPE 333 >gi|262373116|ref|ZP_06066395.1| Holliday junction DNA helicase RuvB [Acinetobacter junii SH205] gi|262313141|gb|EEY94226.1| Holliday junction DNA helicase RuvB [Acinetobacter junii SH205] Length = 331 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/333 (55%), Positives = 242/333 (72%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+S ED +RP +L ++ GQ +++FI AA+ R EALDH L Sbjct: 1 MQDR--LISGIEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +EDL IV R A L + +T E + EIA R+RGTPRIA RLLRRVRD+A+V Sbjct: 179 EFYSVEDLTHIVTRSANLMDVPITREGSTEIARRARGTPRIANRLLRRVRDYAQVKGTGE 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T+E+A AL L +DK G D LD RY++M+ F G P G+E ++A ++E +ED+I Sbjct: 239 VTQEMAQRALDMLNVDKAGLDTLDRRYISMLLERFEGRPTGVEALAAAMAEDSGTLEDVI 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY+IQQG++ RT RGR+ +A+ GI P Sbjct: 299 EPYLIQQGYVMRTARGRIATNMAYLQFGITPPE 331 >gi|83590536|ref|YP_430545.1| Holliday junction DNA helicase RuvB [Moorella thermoacetica ATCC 39073] gi|97190146|sp|Q2RHT7|RUVB_MOOTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|83573450|gb|ABC20002.1| Holliday junction DNA helicase subunit RuvB [Moorella thermoacetica ATCC 39073] Length = 336 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/329 (56%), Positives = 242/329 (73%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M E L++ N+ ED ++ L LRPR L E+ GQ L +FI+AA+ R EALDHVL Sbjct: 1 MATERLVAGNLHNEDQELELSLRPRCLAEYIGQEHVKETLGIFIQAARERGEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A ELGV R TSGP + +AGDLAA+LTNL+ RDVLFIDEIHRL Sbjct: 61 GPPGLGKTTLAGIIANELGVQLRVTSGPALERAGDLAAILTNLQPRDVLFIDEIHRLPRQ 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDF LD+++G+GP ARS++++L FTL+ ATTR GLL++PL+DRFGI RL Sbjct: 121 VEEILYPAMEDFVLDIILGKGPGARSIRLDLPPFTLVGATTRAGLLSSPLRDRFGINSRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY++ +L+ I++R A + +A+ E A EIA R+RGTPR+A RLL+RVRD+AE+ Sbjct: 181 EFYQVAELEEIIRRAATILQVAIEPEGAREIARRARGTPRVANRLLKRVRDYAEIRAGGV 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ITRE+A AL L +D G D D R L + R F GGPVG+ET++A +SE D IED+ Sbjct: 241 ITREVAREALELLQVDAAGLDSSDRRLLLTLIRKFNGGPVGLETLAAAISEEPDTIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EP+++Q G++QRTPRGR+ P A+ HLGI Sbjct: 301 EPFLLQMGYLQRTPRGRVATPGAYAHLGI 329 >gi|229163368|ref|ZP_04291320.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus R309803] gi|228620149|gb|EEK77023.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus R309803] Length = 333 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/329 (56%), Positives = 243/329 (73%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + ED D+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDVDLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331 >gi|228954704|ref|ZP_04116727.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805031|gb|EEM51627.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 333 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 243/329 (73%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS + EDAD+ LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 3 ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H ++IP Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFEMEIP 331 >gi|291538855|emb|CBL11966.1| Holliday junction DNA helicase, RuvB subunit [Roseburia intestinalis XB6B4] Length = 330 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/324 (54%), Positives = 244/324 (75%), Gaps = 1/324 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S V +ED I LRP+TL+++ GQ +A NLKV+IEAAK R EALDHVLF GPPGL Sbjct: 5 VISTQVQEEDIKIEKSLRPQTLDDYIGQQKAKENLKVYIEAAKQRGEALDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+G + + TSGP I K G++AA+L+NL++ DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLAGIIANEMGTHLKVTSGPAIGKPGEMAAILSNLQEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+M+G+G +AR+++++L +FTL+ ATTR GLL+ PL+DRFG+ L FY + Sbjct: 125 YPAMEDYVIDIMIGKGATARAIRLDLPKFTLVGATTRAGLLSAPLRDRFGVVHHLEFYTV 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LKTI+ AK G+ + +E A E+A RSRGTPR+A RLL+RVRDFAEV + I++E+ Sbjct: 185 EELKTIILHSAKTLGVEIDEEGAFELARRSRGTPRLANRLLKRVRDFAEVKYDGKISKEV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +DKMG DQ D L ++ F GGPVG++T++A + E IED+ EPY++ Sbjct: 245 AAFALDLLEVDKMGLDQNDRNILKIMIEKFSGGPVGLDTLAAAIGEDSGTIEDVYEPYLV 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 + GFI RTP+GR++ A+QH G+ Sbjct: 305 KNGFINRTPKGRVVTDFAYQHFGL 328 >gi|118594339|ref|ZP_01551686.1| Holliday junction DNA helicase RuvB [Methylophilales bacterium HTCC2181] gi|118440117|gb|EAV46744.1| Holliday junction DNA helicase RuvB [Methylophilales bacterium HTCC2181] Length = 336 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/308 (58%), Positives = 231/308 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + L++FI AAK R EALDHVL GPPGLGKTTLA ++A+E+GVN Sbjct: 24 LRPKDLQEYVGQEKTRDQLEIFIGAAKNREEALDHVLLFGPPGLGKTTLAHIIAKEMGVN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ K GDLAA+L+NLE DVLFIDEIHRLS ++EEILYPAMED++LD+M+GEG Sbjct: 84 LRQTSGPVLEKTGDLAAILSNLEPNDVLFIDEIHRLSPVIEEILYPAMEDYRLDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSVK+ L FTLI ATTR G+LTNPL+DRFGI RL FY +L IV+R A L + Sbjct: 144 PSARSVKLELPPFTLIGATTRAGMLTNPLRDRFGIVARLEFYNERELSKIVERSAGLLEV 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ + A EIA RSRGTPRI RLLRRVRDFAEV + + +AD AL L +D +G D Sbjct: 204 SIDQDGAKEIAKRSRGTPRIVNRLLRRVRDFAEVKAQGKVNKLVADQALKMLDVDVVGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D L I F GGPVG++ +++ + E ++ IED+IEPY+IQQG++ RTPRGR+ Sbjct: 264 LMDRSLLEAIIIKFAGGPVGLDNLASAIGEEKETIEDVIEPYLIQQGYLMRTPRGRVATA 323 Query: 322 IAWQHLGI 329 +A +HLG+ Sbjct: 324 MAHRHLGL 331 >gi|304312896|ref|YP_003812494.1| Holliday junction resolvasome helicase subunit [gamma proteobacterium HdN1] gi|301798629|emb|CBL46861.1| Holliday junction resolvasome helicase subunit [gamma proteobacterium HdN1] Length = 339 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/330 (56%), Positives = 239/330 (72%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E L+S + +ED +RP L ++TGQV +++FI AA+ R EALDH L GPPG Sbjct: 2 ERLISPHDKKEDGQDRAIRPTRLADYTGQVSVREQMEIFIAAARGRQEALDHTLIFGPPG 61 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A E+G + +STSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEI Sbjct: 62 LGKTTLANIIANEMGSSLKSTSGPVLERAGDLAALLTNLERGDVLFIDEIHRLSPVVEEI 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED+QLD+M+GEGP+ARS+KI+L FTL+ ATTR GLLT+PL+DRFGI RL FY Sbjct: 122 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYN 181 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+L +IV R A + G+ + A EIA RSRGTPRIA RLLRRVRD+ +V TI+++ Sbjct: 182 VEELTSIVSRAAGILGVPIHSGGAIEIARRSRGTPRIANRLLRRVRDYCQVKGDGTISQQ 241 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 + AL L +D GFD +D R L I F GGPVGI+++ A +SE +ED++EPY+ Sbjct: 242 QSARALDLLKVDAFGFDTMDRRLLLAIIEKFDGGPVGIDSLGAAISEESGTLEDVVEPYL 301 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 IQQGF+ RT RGR+ A+ H G+ P R Sbjct: 302 IQQGFLLRTARGRIATRQAYLHFGLPAPRR 331 >gi|167037427|ref|YP_001665005.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040094|ref|YP_001663079.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X514] gi|256752589|ref|ZP_05493443.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus CCSD1] gi|300914177|ref|ZP_07131493.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X561] gi|307724587|ref|YP_003904338.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X513] gi|320115840|ref|YP_004185999.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687547|sp|B0K0L8|RUVB_THEPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238687653|sp|B0K956|RUVB_THEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166854334|gb|ABY92743.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X514] gi|166856261|gb|ABY94669.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748527|gb|EEU61577.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus CCSD1] gi|300889112|gb|EFK84258.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X561] gi|307581648|gb|ADN55047.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X513] gi|319928931|gb|ADV79616.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 338 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/323 (55%), Positives = 243/323 (75%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E +L++N +QEDA LRPR L E+ GQ + LK++IEAAK R E LDHVL GPPG Sbjct: 3 ERILTQNFTQEDASEYSLRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA V++ E+GV + TSGP I K+GDLAA+LTNL++ D+LFIDEIHRL+ VEEI Sbjct: 63 LGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFIDEIHRLNRSVEEI 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF+LD+++G+GPSARS++++L RFTLI ATTR L+T+PL+DRFG+ RL++Y Sbjct: 123 LYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINRLDYYS 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+LK I++R A + + + ++AA EIA RSRGTPRIA RLL+RVRDFA+V I + Sbjct: 183 VEELKEIIKRSANILNIGIDEKAALEIAKRSRGTPRIANRLLKRVRDFAQVRGNGYIDFK 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 + AL L +D++G + +D + L I FGGGPVGI+ I+A + E D IED+ EPY+ Sbjct: 243 TSKEALDVLGVDEIGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPYL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327 +Q GF+ RTPRGR++ +A+ +L Sbjct: 303 LQIGFLNRTPRGRVVTKLAYDYL 325 >gi|291536275|emb|CBL09387.1| Holliday junction DNA helicase, RuvB subunit [Roseburia intestinalis M50/1] Length = 330 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/324 (53%), Positives = 244/324 (75%), Gaps = 1/324 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S V +ED I LRP+TL+++ GQ +A NLKV+IEAAK R E+LDHVLF GPPGL Sbjct: 5 VISTQVQEEDIKIEKSLRPQTLDDYIGQQKAKENLKVYIEAAKQRGESLDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+G + + TSGP I K G++AA+L+NL++ DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLAGIIANEMGTHLKVTSGPAIGKPGEMAAILSNLQEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+M+G+G +AR+++++L +FTL+ ATTR GLL+ PL+DRFG+ L FY + Sbjct: 125 YPAMEDYVIDIMIGKGATARAIRLDLPKFTLVGATTRAGLLSAPLRDRFGVVHHLEFYTV 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LKTI+ AK G+ + +E A E+A RSRGTPR+A RLL+RVRDFAEV + I++E+ Sbjct: 185 EELKTIILHSAKTLGVEIDEEGAFELARRSRGTPRLANRLLKRVRDFAEVKYDGKISKEV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +DKMG DQ D L ++ F GGPVG++T++A + E IED+ EPY++ Sbjct: 245 AAFALDLLEVDKMGLDQNDRNILKIMIEKFSGGPVGLDTLAAAIGEDSGTIEDVYEPYLV 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 + GFI RTP+GR++ A+QH G+ Sbjct: 305 KNGFINRTPKGRMVTDFAYQHFGL 328 >gi|87118956|ref|ZP_01074854.1| Holliday junction DNA helicase RuvB [Marinomonas sp. MED121] gi|86165347|gb|EAQ66614.1| Holliday junction DNA helicase RuvB [Marinomonas sp. MED121] Length = 342 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/312 (57%), Positives = 231/312 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E+ GQ + +FI+AA+ R E LDH L GPPGLGKTTLA ++A E+GV Sbjct: 28 IRPKMLDEYVGQPVVREQMDIFIQAARQREEPLDHCLIFGPPGLGKTTLANIIANEMGVE 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGPV+ +AGDLAALLTNL + DVLFIDEIHRLS +EE+LYPAMED+QLD+M+GEG Sbjct: 88 IKTTSGPVLERAGDLAALLTNLSEGDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 147 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI L FTL+ ATTR GLLT+PL+DRFGI RL FY++E L TIV R A+ GL Sbjct: 148 PAARSIKIELPAFTLVGATTRAGLLTSPLRDRFGIVQRLEFYDVESLTTIVSRSAQKMGL 207 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + EIA R+RGTPRIA RLLRRVRD A+V + + +E+A AL L++D GFD Sbjct: 208 NMDPSGSFEIARRARGTPRIANRLLRRVRDVAQVGGHEIVVQEVAQRALDMLSVDTQGFD 267 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R L + F G PVGI++ISA + E +D IED+IEPY+IQQGF+ RTPRGR + Sbjct: 268 HLDRRMLLTMIEKFDGRPVGIDSISAAVGEDKDTIEDVIEPYLIQQGFVMRTPRGRQVTK 327 Query: 322 IAWQHLGIDIPH 333 A++H +P+ Sbjct: 328 KAYEHFNYQLPN 339 >gi|88802111|ref|ZP_01117639.1| Holliday junction DNA helicase RuvB [Polaribacter irgensii 23-P] gi|88782769|gb|EAR13946.1| Holliday junction DNA helicase RuvB [Polaribacter irgensii 23-P] Length = 340 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 185/321 (57%), Positives = 239/321 (74%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 + N+S ED D+ LRP + ++FTGQ +A NLK+F+EAA R EALDH LF GPPGLGK Sbjct: 9 NSNLSNEDLDVEKKLRPLSFDDFTGQDQAIDNLKIFVEAANQRNEALDHTLFHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A EL V + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS IVEE LY Sbjct: 69 TTLAHILANELQVGIKVTSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSPIVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+++D+M+ GP+AR+V+INL FTLI ATTR GLLT P++ RFGI RL++Y+ + Sbjct: 129 AMEDYKIDIMIESGPNARTVQINLEPFTLIGATTRSGLLTAPMRARFGISSRLHYYKTDL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TI+QR A++ + ++ E+A EIA RSRGTPRIA LLRRVRDFA++ TI+ EIA Sbjct: 189 LTTIIQRSAQILNVPISMESAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGTISIEIAK 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D G D++D + L I F GGPVG+ TI+ +SE + IE++ EP++IQQ Sbjct: 249 YALKALNVDAHGLDEMDNKILVTIIDKFKGGPVGLSTIATAVSENTETIEEVYEPFLIQQ 308 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 GFI RTPRGR + +A++HLG Sbjct: 309 GFIMRTPRGREVTELAYKHLG 329 >gi|294651066|ref|ZP_06728404.1| crossover junction crossover junction ATP-dependent DNA helicase RuvB [Acinetobacter haemolyticus ATCC 19194] gi|292823045|gb|EFF81910.1| crossover junction crossover junction ATP-dependent DNA helicase RuvB [Acinetobacter haemolyticus ATCC 19194] Length = 332 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 185/333 (55%), Positives = 242/333 (72%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+S ED +RP +L ++ GQ +++FI AA+ R EALDH L Sbjct: 1 MQDR--LISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +EDL IV R A L + +T E + EIA R+RGTPRIA RLLRRVRD+A+V Sbjct: 179 EFYSVEDLTHIVTRSANLMDVPLTKEGSTEIARRARGTPRIANRLLRRVRDYAQVKGTGE 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T+++A AL L +DK G D LD RYL+M+ F G P G+E ++A ++E +ED+I Sbjct: 239 VTQDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFEGRPTGVEALAAAMAEDSGTLEDVI 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY+IQQG++ RT RGR+ +A+ G+ P Sbjct: 299 EPYLIQQGYVMRTARGRIATNMAYLQFGLTPPE 331 >gi|85059240|ref|YP_454942.1| Holliday junction DNA helicase B [Sodalis glossinidius str. 'morsitans'] gi|97190324|sp|Q2NTI8|RUVB_SODGM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|84779760|dbj|BAE74537.1| holliday junction DNA helicase RuvB [Sodalis glossinidius str. 'morsitans'] Length = 338 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 185/319 (57%), Positives = 238/319 (74%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V+ E+ +RP+ LE++ GQ +++FI+AAK R +ALDH+L GPPGLGKTTLA Sbjct: 13 VTGEEVIDRAIRPKKLEDYIGQPHVLEQMEIFIQAAKMRGDALDHLLISGPPGLGKTTLA 72 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA E+GVN R+TSGPV+ KAGDLAA+LT+LE DVLFIDEIHRLS +VEE+LYPAMED Sbjct: 73 NIVANEMGVNLRTTSGPVLEKAGDLAAMLTSLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +QLD+M+GEGP+ RS+KI L FTL+ ATTR G LT PL+DRFGI RL FY+ DL+ I Sbjct: 133 YQLDIMIGEGPAGRSIKIELPPFTLVGATTRAGSLTPPLRDRFGIVQRLEFYQTGDLQHI 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V R A L +T+ A EIA R+RGTPRIA RLLRRVRDFAEV A IT ++A +AL Sbjct: 193 VSRSAVCLALNITEGGAREIARRARGTPRIANRLLRRVRDFAEVRAAGHITDDVAVSALN 252 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L +D GFD +D + L I F GGPVG++ ++A + E R+ IED++EP++IQQGFIQ Sbjct: 253 MLNVDTEGFDFMDRKLLLAIIDKFVGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQ 312 Query: 312 RTPRGRLLMPIAWQHLGID 330 RTPRGR+ A++H G++ Sbjct: 313 RTPRGRIATVHAYRHFGLE 331 >gi|88811436|ref|ZP_01126691.1| Holliday junction DNA helicase RuvB [Nitrococcus mobilis Nb-231] gi|88791325|gb|EAR22437.1| Holliday junction DNA helicase RuvB [Nitrococcus mobilis Nb-231] Length = 347 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 190/335 (56%), Positives = 239/335 (71%), Gaps = 1/335 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++ + ED I +RPR L ++ GQ L++F+ AA+ R E LDHVL Sbjct: 1 MIEPDRVVQEQAAGEDEAIDRAIRPRRLADYVGQPTVREQLEIFVHAARQRGEPLDHVLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA ELGV R TSGPV+ K GDLAALLTNLE +DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLAHIVAHELGVGLRQTSGPVLDKPGDLAALLTNLEPQDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 ++EE+LYPAMEDF++D+++GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI R Sbjct: 121 VIEEVLYPAMEDFKIDILIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y +EDL IVQR A L LA+ A EIA RSRGTPRIA RLLRRVRDFAEV Sbjct: 181 LEYYCVEDLAAIVQRSATLLALAIDARGALEIAQRSRGTPRIANRLLRRVRDFAEVKADG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT E+A AA+ L +D GFD D R L I F GGPVG+++++A + + R IED+ Sbjct: 241 RITMEVAKAAMDLLNVDGNGFDVQDRRLLLTIIEKFDGGPVGVDSLAAAIGDERGTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 +EPY+IQQGFI RT RGR+ A+ H G P R Sbjct: 301 LEPYLIQQGFIMRTARGRMATRSAYLHFGYPPPAR 335 >gi|78485239|ref|YP_391164.1| Holliday junction DNA helicase B [Thiomicrospira crunogena XCL-2] gi|97190410|sp|Q31H83|RUVB_THICR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|78363525|gb|ABB41490.1| Holliday junction DNA helicase RuvB [Thiomicrospira crunogena XCL-2] Length = 340 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 183/313 (58%), Positives = 235/313 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ + ++ GQ L++ I AAK R E LDHVL GPPGLGKTTL+ ++A+E+GV Sbjct: 23 VRPQIITDYIGQQAVREQLQLSINAAKMRQEHLDHVLLYGPPGLGKTTLSNIIAQEMGVT 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPVI K GDLAA+LT LE DVLF+DEIHRLS IVEE+LYPAMEDFQ+D+++GEG Sbjct: 83 LRQTSGPVIEKPGDLAAILTRLEPHDVLFVDEIHRLSPIVEEVLYPAMEDFQIDIIIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+SVKI++ FTL+ ATTR GLLT+PL+DRFGI RL FY IE+L IV R A + GL Sbjct: 143 PAAQSVKIDIPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYSIEELAQIVTRSANILGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRIA RLLRRVRD+A+V IT EIAD AL L +D +G D Sbjct: 203 SAEPDGALEIARRSRGTPRIANRLLRRVRDYAQVKGNGVITAEIADLALNLLEVDPLGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L ++ + F PVGI++ISA L E R IED+IEP+++QQGF+ RTPRGR++ Sbjct: 263 KMDRRLLELLIQKFESRPVGIDSISAALGEERGTIEDVIEPFLVQQGFLIRTPRGRVVTQ 322 Query: 322 IAWQHLGIDIPHR 334 A++HLG+ +P R Sbjct: 323 TAYRHLGLTMPER 335 >gi|254448678|ref|ZP_05062136.1| Holliday junction DNA helicase RuvB [gamma proteobacterium HTCC5015] gi|198261686|gb|EDY85973.1| Holliday junction DNA helicase RuvB [gamma proteobacterium HTCC5015] Length = 353 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 180/319 (56%), Positives = 235/319 (73%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +EDA +RP L ++ GQ + +++FI AA+ R EALDHVL GPPGLGKTTL+ + Sbjct: 17 REDAVDRAIRPVRLADYMGQPKVHEQMEIFISAARQRREALDHVLIFGPPGLGKTTLSNI 76 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+GV+ R TSGPV+ + GDLAA+LTNLE+ DVLFIDEIHRLS +VEE+LYPAMEDFQ Sbjct: 77 IAHEMGVSIRHTSGPVLERPGDLAAILTNLEENDVLFIDEIHRLSAVVEEVLYPAMEDFQ 136 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+MVGEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL+FY+I+ L IVQ Sbjct: 137 LDIMVGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGITQRLSFYDIDTLTKIVQ 196 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + + + + A E+A RSRGTPRIA RLLRRVRDFAEV HA +T A AL L Sbjct: 197 RSAHILNVDMQEAGAREVARRSRGTPRIANRLLRRVRDFAEVRHAGKVTETAAREALDML 256 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +G D +D + I F GGPVG++ ++A + E R +ED++EPY+IQ+G + RT Sbjct: 257 DVDSLGLDNMDRLLIQTIIDKFSGGPVGLDNLAAAIGEERGTLEDVVEPYLIQEGLLMRT 316 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A+QH G+ P Sbjct: 317 PRGRVATASAYQHFGLKAP 335 >gi|68171607|ref|ZP_00544977.1| Holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str. Sapulpa] gi|88657636|ref|YP_507140.1| Holliday junction DNA helicase B [Ehrlichia chaffeensis str. Arkansas] gi|123763771|sp|Q2GHE3|RUVB_EHRCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|67998974|gb|EAM85655.1| Holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str. Sapulpa] gi|88599093|gb|ABD44562.1| holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str. Arkansas] Length = 329 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/324 (56%), Positives = 238/324 (73%), Gaps = 3/324 (0%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 + +L ED +RP L++F GQ +NLK+FI AA R E +DHVL GPPG Sbjct: 2 KNILQSTECLEDQQNVSMRPNLLDDFIGQSSVVNNLKIFINAAYTRKEPMDHVLLYGPPG 61 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+ +D+LFIDEIHRL+ +EEI Sbjct: 62 LGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQAKDILFIDEIHRLNRNIEEI 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LY AMEDF LD++VGEG AR+++++L FTL+ ATTR+GLL+NPL+DRFGIPI L FY Sbjct: 122 LYSAMEDFCLDIIVGEGCGARTLRVDLPPFTLVGATTRIGLLSNPLRDRFGIPIHLEFYS 181 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITR 243 E+L ++QR AK+ +++ A EI++RSRGTPRIA RLLRR+RDF EV H K IT Sbjct: 182 TEELTKVIQRAAKVIKTNISNSGAQEISLRSRGTPRIALRLLRRIRDFMEVTEHNKIITD 241 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 AD ALLRL IDK+G D+ D++YL I + P GI+TIS+GLSE IE+ IEPY Sbjct: 242 TFADKALLRLGIDKLGLDRQDIQYLKFIYDS--NNPTGIDTISSGLSEDTGNIEETIEPY 299 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327 +I+ FIQRTPRGR++ A HL Sbjct: 300 LIKINFIQRTPRGRVITEKAISHL 323 >gi|240144038|ref|ZP_04742639.1| holliday junction DNA helicase RuvB [Roseburia intestinalis L1-82] gi|257203964|gb|EEV02249.1| holliday junction DNA helicase RuvB [Roseburia intestinalis L1-82] Length = 330 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/324 (53%), Positives = 244/324 (75%), Gaps = 1/324 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S V +ED I LRP+TL+++ GQ +A NLKV+IEAAK R EALDHVLF GPPGL Sbjct: 5 VISTQVQEEDIKIEKSLRPQTLDDYIGQQKAKENLKVYIEAAKQRGEALDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+G + + TSGP I K G++AA+L+NL++ DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLAGIIANEMGTHLKVTSGPAIGKPGEMAAILSNLQEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+M+G+G +AR+++++L +FTL+ ATTR GLL+ PL+DRFG+ L FY + Sbjct: 125 YPAMEDYVIDIMIGKGATARAIRLDLPKFTLVGATTRAGLLSAPLRDRFGVVHHLEFYTV 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LKTI+ AK G+ + ++ A E+A RSRGTPR+A RLL+RVRDFAEV + I++E+ Sbjct: 185 EELKTIILHSAKTLGVEIDEKGAFELARRSRGTPRLANRLLKRVRDFAEVKYDGKISKEV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +DKMG DQ D L ++ F GGPVG++T++A + E IED+ EPY++ Sbjct: 245 AAFALDLLEVDKMGLDQNDRNILKIMIEKFSGGPVGLDTLAAAIGEDSGTIEDVYEPYLV 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 + GFI RTP+GR++ A+QH G+ Sbjct: 305 KNGFINRTPKGRVVTDFAYQHFGL 328 >gi|307266569|ref|ZP_07548101.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter wiegelii Rt8.B1] gi|306918423|gb|EFN48665.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter wiegelii Rt8.B1] Length = 338 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/323 (55%), Positives = 243/323 (75%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E +L+++ +QEDA LRPR L E+ GQ + LK++IEAAK R E LDHVL GPPG Sbjct: 3 ERILTQSFTQEDASEYSLRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA V++ E+GV + TSGP I K+GDLAA+LTNL++ D+LFIDEIHRL+ VEEI Sbjct: 63 LGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFIDEIHRLNRSVEEI 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF+LD+++G+GPSARS++++L RFTLI ATTR L+T+PL+DRFG+ RL++Y Sbjct: 123 LYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINRLDYYS 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+LK I++R A + + + ++AA EIA RSRGTPRIA RLL+RVRDFA+V I + Sbjct: 183 VEELKEIIKRSANILNIGIDEDAAFEIAERSRGTPRIANRLLKRVRDFAQVRGNGYIDFK 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 + AL L +D+MG + +D + L I FGGGPVGI+ I+A + E D IED+ EPY+ Sbjct: 243 TSKEALDVLGVDEMGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPYL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327 +Q GF+ RTPRGR++ +A+ +L Sbjct: 303 LQIGFLNRTPRGRVVTKLAYDYL 325 >gi|291533855|emb|CBL06968.1| Holliday junction DNA helicase, RuvB subunit [Megamonas hypermegale ART12/1] Length = 334 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 178/308 (57%), Positives = 232/308 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + NL +FI+AA R EALDHVL GPPGLGKTTLA ++A E+GVN Sbjct: 23 LRPKKLQEYIGQDKVKDNLSIFIQAALNRNEALDHVLLYGPPGLGKTTLANIIANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGP I ++GDLAALLTNL ++DVLFIDEIHRLS VEE+LY AMEDF LD+++G+G Sbjct: 83 FRVTSGPAIERSGDLAALLTNLTEKDVLFIDEIHRLSHSVEEVLYSAMEDFALDIIIGKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++++++ FTLI ATT+ G L +PL+DRFG+ RL +Y E L I++R A++ + Sbjct: 143 PSARSIRLDIAPFTLIGATTKAGALASPLRDRFGVISRLEYYTPESLVFIIKRSAEILNI 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D A EIA RSRGTPR+A RLL+RVRDFA++ IT EIAD AL L IDKMG D Sbjct: 203 PIEDRGALEIARRSRGTPRVANRLLKRVRDFAQIKGDGIITDEIADTALAMLEIDKMGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D L + FGGGPVG+ET++A +SE D I D+ EPY++Q GFI RTPRGR++ Sbjct: 263 HIDRNILLTMINKFGGGPVGLETLAAAVSEETDTIGDVYEPYLLQLGFINRTPRGRVVTK 322 Query: 322 IAWQHLGI 329 + ++HLG+ Sbjct: 323 LGYEHLGL 330 >gi|262278157|ref|ZP_06055942.1| Holliday junction resolvasome protein [Acinetobacter calcoaceticus RUH2202] gi|262258508|gb|EEY77241.1| Holliday junction resolvasome protein [Acinetobacter calcoaceticus RUH2202] Length = 334 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 183/333 (54%), Positives = 241/333 (72%), Gaps = 2/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR L+S ED +RP +L ++ GQ +++FI AA+ R EALDH L Sbjct: 1 MQDR--LISGAEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS + Sbjct: 59 GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +EDL IV R A L + +T E + E+A R+RGTPRIA RLLRRVRD+A+V Sbjct: 179 EFYSVEDLTHIVSRSANLMNVPITVEGSEEVARRARGTPRIANRLLRRVRDYAQVKGTGE 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +DK G D LD RYL+M+ F GGP G+E ++A ++E +ED++ Sbjct: 239 VTHDMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVL 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY+IQQG++ RT RGR+ ++ G+ P Sbjct: 299 EPYLIQQGYVMRTARGRIATNQSYLQFGLTPPE 331 >gi|124265520|ref|YP_001019524.1| Holliday junction DNA helicase RuvB [Methylibium petroleiphilum PM1] gi|171769833|sp|A2SCK0|RUVB_METPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|124258295|gb|ABM93289.1| putative holliday junction DNA helicase protein [Methylibium petroleiphilum PM1] Length = 355 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/319 (57%), Positives = 231/319 (72%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+A LRP+ L ++ GQ +A L++FI AA+ R+EALDHVL GPPGLGKTTL+ + Sbjct: 27 NEEAIERALRPKGLADYVGQAKAREQLEIFIGAARKRSEALDHVLLFGPPGLGKTTLSHI 86 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGVN R TSGPV+ K DLAA+LTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q Sbjct: 87 IAAELGVNLRQTSGPVLEKPKDLAAILTNLERNDVLFIDEIHRLSPVVEEILYPALEDYQ 146 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+M+GEGP+ARS+K+ L FTLI ATTR G+LTNPL+DRFGI RL FY +E+L IV Sbjct: 147 IDIMIGEGPAARSIKLELQPFTLIGATTRAGMLTNPLRDRFGIVARLEFYSVEELARIVT 206 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L + EIA RSRGTPRIA RLLRRVRD+A+V I IAD AL L Sbjct: 207 RSAGLLQVPTDTAGGLEIAKRSRGTPRIANRLLRRVRDYAQVKGDGRIDAAIADKALAML 266 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD +D + L + F GGPVG++ ++A + E IED+IEPY+IQQG++QRT Sbjct: 267 DVDPQGFDVMDRKLLEAVIHRFDGGPVGLDNVAAAIGEESGTIEDVIEPYLIQQGYLQRT 326 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ A++HLG+ P Sbjct: 327 PRGRIATAAAYRHLGVLPP 345 >gi|322382935|ref|ZP_08056767.1| Holliday junction DNA helicase RuvB-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153055|gb|EFX45513.1| Holliday junction DNA helicase RuvB-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 334 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/334 (55%), Positives = 246/334 (73%), Gaps = 3/334 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++S N+ ED + L LRPR L E+ GQ +A N+KV+IEAAK R EALDHVL Sbjct: 1 MDDR--IISANLMMEDQQMELSLRPRYLAEYIGQTQAKENMKVYIEAAKMRQEALDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A ELGVN R+TSGP I + GDLAA+LTNL++ DVLFIDEIHRL Sbjct: 59 YGPPGLGKTTLSTIIANELGVNIRTTSGPAIERPGDLAAILTNLQENDVLFIDEIHRLHR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMEDF LD+++G+GPSARSV+++L FTLI ATTR+GLL+ PL+DRFG+ R Sbjct: 119 TVEEVLYPAMEDFALDIIIGKGPSARSVRLDLPPFTLIGATTRIGLLSAPLRDRFGVVSR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y +++L IV R A + + + EAA EI R+RGTPRIA RLL+RVRDFA+V Sbjct: 179 LEYYTVDELAFIVTRAADILNVQIVGEAAQEIGRRARGTPRIANRLLKRVRDFAQVRGDG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ +IA AAL + +D +G D++D + L I +F GGPVG++TI+A + E IE++ Sbjct: 239 IISLDIAKAALKLIQVDDLGLDEIDHKMLRAIILSFRGGPVGLDTIAATIGEESQTIEEV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY++Q GF+QRTPRGR+ A+ HLG+ P Sbjct: 299 YEPYLLQIGFLQRTPRGRMATLQAYDHLGLPRPE 332 >gi|254468426|ref|ZP_05081832.1| Holliday junction DNA helicase RuvB [beta proteobacterium KB13] gi|207087236|gb|EDZ64519.1| Holliday junction DNA helicase RuvB [beta proteobacterium KB13] Length = 342 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/310 (58%), Positives = 230/310 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+E+ GQ + L++FI+AA+ R EALDHVL GPPGLGKTTL+ ++ARE+ V Sbjct: 23 LRPADLDEYVGQEKIRDQLEIFIKAAQQRGEALDHVLLFGPPGLGKTTLSHIIAREMNVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ KAGDLAALLTNLE DVLFIDEIHRLS I+EEILYPAMED LD+M+G+G Sbjct: 83 LKQTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSPIIEEILYPAMEDNHLDIMIGDG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY ++L IV+R AKL + Sbjct: 143 PSARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYSQDELIRIVKRSAKLLDI 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D A EIA RSRGTPRIA RLLRRVRD+A V + + ADAAL L +DK+G D Sbjct: 203 FIDDSGAAEIAKRSRGTPRIANRLLRRVRDYASVKADGNVNDKTADAALKMLDVDKIGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D L I F GGPVG++ ++A + E ++ IED+IEPY+IQQG++ RTP+GR+ Sbjct: 263 NMDRALLLAIIEKFKGGPVGLDNLAAAIGEEKETIEDVIEPYLIQQGYLMRTPKGRIATD 322 Query: 322 IAWQHLGIDI 331 ++ +H I I Sbjct: 323 LSLKHFNIPI 332 >gi|167745588|ref|ZP_02417715.1| hypothetical protein ANACAC_00279 [Anaerostipes caccae DSM 14662] gi|317472816|ref|ZP_07932127.1| Holliday junction DNA helicase RuvB [Anaerostipes sp. 3_2_56FAA] gi|167654900|gb|EDR99029.1| hypothetical protein ANACAC_00279 [Anaerostipes caccae DSM 14662] gi|316899735|gb|EFV21738.1| Holliday junction DNA helicase RuvB [Anaerostipes sp. 3_2_56FAA] Length = 332 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 183/333 (54%), Positives = 247/333 (74%), Gaps = 3/333 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M+DR ++S + +ED I + LRP+ L+++ GQ + NL++FIEAAK+R E+LDHVL Sbjct: 1 MLDR--MISTELVEEDITIENNLRPQNLDDYIGQEKVKQNLRIFIEAAKSRGESLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+ V+ + TSGP I K G++AALL NL++ DVLFIDEIHRL+ Sbjct: 59 YGPPGLGKTTLAGIVANEMEVHLKVTSGPAIEKPGEIAALLNNLQEGDVLFIDEIHRLNR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMEDF +D++VG+G +ARS+++ L +FTL+ ATTR G+LT PL+DRFG+ R Sbjct: 119 QVEEVLYPAMEDFAIDILVGKGQAARSIRLELPKFTLVGATTRAGMLTAPLRDRFGVVNR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 LNFYE E+L TIV A + G+ + +E A EIA RSRGTPR+A RLL+RVRDFAEV + Sbjct: 179 LNFYETEELMTIVINSAAVLGIPIEEEGAREIARRSRGTPRLANRLLKRVRDFAEVKYDG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT+E+A +AL L +D +G DQ+D L + F G PVG++T++A + E IED+ Sbjct: 239 VITKEVAMSALNHLEVDTLGLDQIDRTLLKTMIEVFHGSPVGLDTLAAAVGEDSGTIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQ G IQRTPRGR++ A+QH G+ IP Sbjct: 299 YEPYLIQNGLIQRTPRGRIVTGAAYQHFGLPIP 331 >gi|52081252|ref|YP_080043.1| Holliday junction DNA helicase RuvB [Bacillus licheniformis ATCC 14580] gi|52786632|ref|YP_092461.1| Holliday junction DNA helicase RuvB [Bacillus licheniformis ATCC 14580] gi|319644781|ref|ZP_07999014.1| Holliday junction DNA helicase ruvB [Bacillus sp. BT1B_CT2] gi|59800222|sp|Q65GP6|RUVB_BACLD RecName: Full=Holliday junction DNA helicase ruvB gi|52004463|gb|AAU24405.1| Holliday junction DNA helicase [Bacillus licheniformis ATCC 14580] gi|52349134|gb|AAU41768.1| RuvB [Bacillus licheniformis ATCC 14580] gi|317392590|gb|EFV73384.1| Holliday junction DNA helicase ruvB [Bacillus sp. BT1B_CT2] Length = 334 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 189/333 (56%), Positives = 240/333 (72%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD + S + E A LRP+ L ++ GQ + NLKVFIEAAK R E LDHVL G Sbjct: 1 MDERLVSSELDNHESAIEQSLRPQRLAQYIGQEKVKDNLKVFIEAAKMREETLDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT LE DVLFIDEIHRL + Sbjct: 61 PPGLGKTTLAAIIANEMGVNLRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSI 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTRVGLLT PL+DRFG+ RL Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSRLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y ++L IV R A+L + + +A EIA RSRGTPRIA RLLRRVRDFA+V +I Sbjct: 181 YYTRDELSEIVIRTAELFEVDIDSLSALEIARRSRGTPRIANRLLRRVRDFAQVLGNSSI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T E+A AL RL +DK+G D +D + L + FGGGPVGI+TISA + E IED+ E Sbjct: 241 TEEVAVDALERLQVDKLGLDHIDRKLLMGMIEKFGGGPVGIDTISATIGEESHTIEDVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 PY++Q GFIQRTPRGR++ P + H +++P+ Sbjct: 301 PYLLQIGFIQRTPRGRIVTPDVYSHFKMEVPNH 333 >gi|167770543|ref|ZP_02442596.1| hypothetical protein ANACOL_01889 [Anaerotruncus colihominis DSM 17241] gi|167667138|gb|EDS11268.1| hypothetical protein ANACOL_01889 [Anaerotruncus colihominis DSM 17241] Length = 346 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/318 (57%), Positives = 234/318 (73%), Gaps = 1/318 (0%) Query: 16 DADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 D+DI + LRP+TL E+ GQ + N+++FI AAK R E LDHVL GPPGLGKTTL+ ++ Sbjct: 21 DSDIEVTLRPKTLAEYIGQEKVKENMRIFISAAKGRGEPLDHVLLYGPPGLGKTTLSNII 80 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R TSGP I K GDLAALLTNL D+LFIDEIHRLS VEE+LYPAMEDF L Sbjct: 81 ANEMGVNIRITSGPAIEKPGDLAALLTNLAPNDILFIDEIHRLSRAVEEVLYPAMEDFAL 140 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+++G+GPSARS++I+L FTL+ ATTR G LT+PL+DRFG+ RL Y ++L+TI+ R Sbjct: 141 DIIIGKGPSARSIRIDLPHFTLVGATTRAGQLTSPLRDRFGVIQRLELYTADELQTIILR 200 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + A E+A RSRGTPR+A RLL+RVRDFAEV IT EIA AL R+ Sbjct: 201 SAGILGVMCDPKGAYELARRSRGTPRVANRLLKRVRDFAEVMGNGRITEEIAAIALDRME 260 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 IDK+G D +D R L I +GGGPVG+ET++A L E +ED+ EP+++Q GF+ RTP Sbjct: 261 IDKLGLDAVDRRMLETIIHGYGGGPVGLETLAAALGEEAVTLEDVCEPFLMQLGFLARTP 320 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR + +A+ HLGI P Sbjct: 321 RGRCVTALAYSHLGIKTP 338 >gi|77163678|ref|YP_342203.1| Holliday junction DNA helicase B [Nitrosococcus oceani ATCC 19707] gi|254435093|ref|ZP_05048600.1| Holliday junction DNA helicase RuvB [Nitrosococcus oceani AFC27] gi|97190177|sp|Q3JES3|RUVB_NITOC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|76881992|gb|ABA56673.1| Holliday junction DNA helicase subunit RuvB [Nitrosococcus oceani ATCC 19707] gi|207088204|gb|EDZ65476.1| Holliday junction DNA helicase RuvB [Nitrosococcus oceani AFC27] Length = 348 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/308 (58%), Positives = 233/308 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L ++ GQ + ++VFI AA+AR EALDHVL GPPGLGKTTL+ ++A EL VN Sbjct: 23 LRPARLADYVGQPQVQEQMEVFIPAARARHEALDHVLIFGPPGLGKTTLSHIIANELEVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ + GDLAALLTNLE RDVLFIDEIHRLS +VEE+LYPAMED Q+D+M+GEG Sbjct: 83 LRQTSGPVLERPGDLAALLTNLEPRDVLFIDEIHRLSPVVEEVLYPAMEDRQIDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY ++ L IV+R A++ G+ Sbjct: 143 PAARSIKLDLVPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYAVDHLVLIVERTARILGM 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ E A EIA RSRGTPRIA RLLRRVRD+AE+ +TR++A AL L +D GFD Sbjct: 203 AMEKEGALEIARRSRGTPRIANRLLRRVRDYAEIKGDGQVTRQVAQKALDLLDVDSHGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + F GGPVG+++++A + E R IED+IEP+++QQGF+ RTPRGR+ Sbjct: 263 TMDRKLLLAMLEKFDGGPVGVDSLAAAIGEERGTIEDVIEPFLLQQGFVMRTPRGRMATR 322 Query: 322 IAWQHLGI 329 A+ H G+ Sbjct: 323 HAYLHFGL 330 >gi|119944490|ref|YP_942170.1| Holliday junction DNA helicase B [Psychromonas ingrahamii 37] gi|166231543|sp|A1SSV6|RUVB_PSYIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|119863094|gb|ABM02571.1| Holliday junction DNA helicase subunit RuvB [Psychromonas ingrahamii 37] Length = 334 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/312 (57%), Positives = 233/312 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ + +++FIEAA+ R EALDH+L GPPGLGKTTL+ +VA EL VN Sbjct: 23 IRPKFLADYEGQPQVNKQMEIFIEAARQRNEALDHLLIFGPPGLGKTTLSHIVANELEVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP++ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG Sbjct: 83 IKTTSGPILEKAGDLAALLTNLEENDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL +Y+++ L IV R A L Sbjct: 143 PAARSIKLDLPAFTLIGATTRAGSLTSPLRDRFGIVQRLEYYDLKSLTRIVLRSAGHFKL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +++ A EIA RSRGTPRIA RLLRRVRD+A+V A I ++A AL L +D GFD Sbjct: 203 NMSEAGAVEIARRSRGTPRIANRLLRRVRDYAQVKKANVIDDDVAKLALDMLEVDNEGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++ ++A + E ++ IED++EPY+IQQGF+QRTPRGR+ Sbjct: 263 YMDRKLLMAILDTFMGGPVGLDNLAAAIGEEKETIEDVLEPYLIQQGFLQRTPRGRIATN 322 Query: 322 IAWQHLGIDIPH 333 + H G D P Sbjct: 323 RTYLHFGFDKPQ 334 >gi|220928773|ref|YP_002505682.1| Holliday junction DNA helicase RuvB [Clostridium cellulolyticum H10] gi|219999101|gb|ACL75702.1| Holliday junction DNA helicase RuvB [Clostridium cellulolyticum H10] Length = 335 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 185/326 (56%), Positives = 234/326 (71%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E L+ +D D LRP+ E+ GQ + NL VFIEAAK R EALDHVL GPPG Sbjct: 7 ERLVEAGTRSDDLDEVSLRPKRFGEYIGQAKVKDNLTVFIEAAKKRKEALDHVLLYGPPG 66 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA +++ E+GVN R TSGP I KAGDLAA+LTNL DVLFIDEIHRL+ VEEI Sbjct: 67 LGKTTLASIISSEMGVNLRITSGPAIEKAGDLAAILTNLGTHDVLFIDEIHRLNRSVEEI 126 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT PL+DRFG+ +L Y Sbjct: 127 LYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTAPLRDRFGVINKLEMYS 186 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 E+LK IV+R A + + + DE A EIA RSRGTPRIA RLL+RVRDFA+V + TI E Sbjct: 187 AEELKEIVRRSAGILNIGLDDEGAYEIARRSRGTPRIANRLLKRVRDFAQVKGSGTIELE 246 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A AL L +D++G D +D L I FGGGPVG++T++A + E IED+ EPY+ Sbjct: 247 LAKHALDALEVDEIGLDGVDRNMLLSIINKFGGGPVGLDTLAASIGEEAGTIEDVYEPYL 306 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330 IQ GFI +TPRGR+ A+ H G++ Sbjct: 307 IQLGFINKTPRGRMTTKNAYAHFGLE 332 >gi|289578211|ref|YP_003476838.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter italicus Ab9] gi|297544492|ref|YP_003676794.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527924|gb|ADD02276.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter italicus Ab9] gi|296842267|gb|ADH60783.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 338 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/323 (54%), Positives = 243/323 (75%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E +L+++ +QEDA LRPR L E+ GQ + LK++IEAAK R E LDHVL GPPG Sbjct: 3 ERILTQSFTQEDASEYSLRPRWLSEYIGQEKIKEELKIYIEAAKMRKEPLDHVLLYGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA V++ E+GV + TSGP I ++GDLAA+LTNL++ D+LFIDEIHRL+ VEEI Sbjct: 63 LGKTTLATVISNEMGVGIKITSGPAIERSGDLAAILTNLQENDILFIDEIHRLNRSVEEI 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF+LD+++G+GPSARS++++L RFTLI ATTR L+T+PL+DRFG+ RL++Y Sbjct: 123 LYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINRLDYYS 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +++LK I++R A + + + ++AA EIA RSRGTPRIA RLL+RVRDFA+V I + Sbjct: 183 VDELKEIIKRSANILNIGIDEDAALEIAKRSRGTPRIANRLLKRVRDFAQVRGNGYINFK 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 + AL L +D+MG + +D + L I FGGGPVGI+ I+A + E D IED+ EPY+ Sbjct: 243 TSKEALDVLGVDEMGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPYL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327 +Q GF+ RTPRGR++ +A+ +L Sbjct: 303 LQIGFLNRTPRGRVVTKLAYDYL 325 >gi|88608213|ref|YP_506456.1| Holliday junction DNA helicase B [Neorickettsia sennetsu str. Miyayama] gi|123736351|sp|Q2GDJ0|RUVB_NEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|88600382|gb|ABD45850.1| holliday junction DNA helicase RuvB [Neorickettsia sennetsu str. Miyayama] Length = 331 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 170/307 (55%), Positives = 238/307 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+++E+F GQ NL+VFI++A+ R ++LDHVLF GPPGLGKTTLA +++ EL Sbjct: 17 LRPKSIEKFVGQQRVVENLQVFIDSAQKRNDSLDHVLFCGPPGLGKTTLAHIISNELESR 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +T+GP+++KAGD+AA+LTNL D+LFIDEIHRL VEE+LYPAMED+ LDL+VG+G Sbjct: 77 IHTTAGPLLSKAGDIAAILTNLHKNDILFIDEIHRLPSAVEEVLYPAMEDYHLDLIVGDG 136 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+S++INL++FTL+AATTR+G+L+NPL+DRFGI +RL+FY + +L ++Q+ A+ + Sbjct: 137 PAAKSIRINLAKFTLVAATTRIGMLSNPLRDRFGITLRLDFYTVSELLQLLQQAAERLSV 196 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A E+A RSRGTPRIA RLL+RVRDF EV+ + ITRE AD AL ++ +D+ G D Sbjct: 197 NIENGAMIELAKRSRGTPRIALRLLKRVRDFLEVSDSDVITREFADLALNKMEVDQFGLD 256 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD Y+ IA+N+ PVGI+TI+A +SE D+IE+LIEPY+I+ GF+ RT RGR L Sbjct: 257 KLDYTYMDFIAKNYSDNPVGIKTIAAAISEKEDSIEELIEPYLIKIGFLSRTQRGRRLTG 316 Query: 322 IAWQHLG 328 A +L Sbjct: 317 KALDYLS 323 >gi|323702065|ref|ZP_08113733.1| Holliday junction DNA helicase RuvB [Desulfotomaculum nigrificans DSM 574] gi|323532947|gb|EGB22818.1| Holliday junction DNA helicase RuvB [Desulfotomaculum nigrificans DSM 574] Length = 344 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/330 (55%), Positives = 240/330 (72%), Gaps = 1/330 (0%) Query: 5 EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E L+S ED DI LRP+ L+E+ GQ +A + +F+EAA+ R EALDHVL GPP Sbjct: 3 ERLVSAVAQTEDNDIERSLRPKRLKEYIGQQKAKETIAIFVEAARQRGEALDHVLLFGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL + D+LFIDEIHRLS VEE Sbjct: 63 GLGKTTLSNIIANEMGVNIRVTSGPAIERQGDLAAILTNLSEGDILFIDEIHRLSRAVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 ILYPAMED+ LD+++G+GP ARS++++L +FTLI ATTR G+L +PL+DRFGI RL FY Sbjct: 123 ILYPAMEDYALDIVLGKGPGARSIRLDLPKFTLIGATTRAGMLASPLRDRFGIISRLEFY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E+L IV R A++ +++ A EIA RSRGTPR+A RLL+RVRD+A+V IT Sbjct: 183 SAEELTEIVLRAARILNVSIEKSGAAEIARRSRGTPRVANRLLKRVRDYAQVKAQGEITA 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 E+A AL +D +G DQ D R L I F GGPVG++TI+A SE D +ED++EP+ Sbjct: 243 EVAAEALEFFEVDPLGMDQTDRRLLYTIIEKFNGGPVGLDTIAAATSEEPDTVEDVLEPF 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++Q GFI RTPRGR++ P A++HLGI + + Sbjct: 303 LMQLGFIARTPRGRVVTPQAYRHLGIPLKN 332 >gi|20140283|sp|Q9KDI8|RUVB_BACHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB Length = 333 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/331 (53%), Positives = 247/331 (74%), Gaps = 1/331 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++S E+A + +RP + E++ GQ + NLKVFIEAAK R EALDHVL GPP Sbjct: 3 ERMVSAEAQTEEAAVEQGIRPHSFEQYIGQEKVKQNLKVFIEAAKMREEALDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A ELGV R+TSGP I + GDLAA+LT LE DVLFIDEIHRL+ +VEE Sbjct: 63 GLGKTTLSTIIANELGVQMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRMVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMED+ +D+++G+GP+ARSV+++L FTL+ ATTR G+L++PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDYCIDIVIGKGPTARSVRLDLPPFTLVGATTRAGMLSSPLRDRFGVMARLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 +E+L TI++R A + + +A+ EIA RSRGTPRIA RLLRRVRDFA+V+ I+ Sbjct: 183 NVEELTTIIERTATIFDTELERDASIEIARRSRGTPRIANRLLRRVRDFAQVSGDMRISS 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 A +L RL +D++G D +D + + I F GGPVG+ETISA + E D IE++ EPY Sbjct: 243 SRAIESLERLQVDRLGLDHIDHKLIKGIMTKFNGGPVGLETISATIGEETDTIEEVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++Q GF+QRTPRGR++ P+A++H +++P++ Sbjct: 303 LLQIGFLQRTPRGRVVTPLAYEHFNMEVPNK 333 >gi|310658620|ref|YP_003936341.1| ATP-dependent DNA helicase, component of ruvABC resolvasome [Clostridium sticklandii DSM 519] gi|308825398|emb|CBH21436.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Clostridium sticklandii] Length = 333 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 171/327 (52%), Positives = 245/327 (74%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++++ L+ ++ ED LRPR + E+ GQ A + L +FIEAAK R E LDHVL G Sbjct: 4 INQDRLIDSSLKIEDESEVSLRPRNISEYIGQTNAVNQLNIFIEAAKKRNETLDHVLLYG 63 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTL+ ++A E+GV+ + TSGP I +AGDLAA+LTNL+D+D+LFIDEIHR++ V Sbjct: 64 PPGLGKTTLSHIIASEMGVDIKVTSGPAIERAGDLAAILTNLKDKDILFIDEIHRINRNV 123 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMED+ LD+++G+GPSARS+++++ +FTLI ATTR G+LT+PL+DRFG+ + L+ Sbjct: 124 EEVLYPAMEDYCLDIIIGKGPSARSIRLDIPKFTLIGATTRTGMLTSPLRDRFGVILNLD 183 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 Y +E L IV R AK+ + + ++AA EIA RSRGTPRIA RLL+RVRD+A+V I Sbjct: 184 LYSVEQLLEIVTRSAKILDVPINNDAAIEIARRSRGTPRIANRLLKRVRDYAQVMGDGKI 243 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T +IA +LL +D+ G D++D R L I +NF GGPVG++T++A + E ++ IE++ E Sbjct: 244 TLKIAKESLLVFEVDEEGLDKVDQRLLQSIIKNFAGGPVGLDTLAASIGEDKETIEEVCE 303 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328 P++IQ+GF+ RTPRGR+ A++H Sbjct: 304 PFLIQKGFLNRTPRGRVATDFAYKHFN 330 >gi|258593141|emb|CBE69452.1| Holliday junction DNA helicase ruvB [NC10 bacterium 'Dutch sediment'] Length = 351 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/330 (55%), Positives = 243/330 (73%), Gaps = 1/330 (0%) Query: 4 REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 RE + +R + ED ++ LRP+ +++ GQ + +NL+VF+ AKAR E LDH+LF GP Sbjct: 12 RERVANRQLQDEDQELEQSLRPKAWDDYIGQEKVKANLQVFVRGAKARREPLDHLLFYGP 71 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKT+LA ++A E+GVN R TSGPVI + DLAA+L+NL ++DVLFIDEIHRL+ +VE Sbjct: 72 PGLGKTSLAFMIASEMGVNIRVTSGPVIERQKDLAAILSNLREQDVLFIDEIHRLNPLVE 131 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E LYPAMED++LDL++G+GPSA+S ++ L RFTLI ATTR GLL +PL +RFG+ RL+F Sbjct: 132 ETLYPAMEDYRLDLIIGQGPSAQSYRLKLPRFTLIGATTRAGLLASPLLNRFGVVQRLDF 191 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y DL IV R A++ G+++ + A EIA RSRGTPRI RLLRRVRDFA+V IT Sbjct: 192 YNDADLFRIVLRSAQILGVSIMENGAWEIARRSRGTPRIVNRLLRRVRDFAQVLGDGVIT 251 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 RE+A +AL RL +D GFD++D R L I F GGPVGIET++ + E +D IED+ EP Sbjct: 252 REVAQSALERLEVDTNGFDEMDRRILHTIIEKFAGGPVGIETLAVAVGEEKDTIEDVYEP 311 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++IQQGF+ RTPRGR + +A+ H + P Sbjct: 312 FLIQQGFLARTPRGRTVTRLAFDHFKLPRP 341 >gi|188586411|ref|YP_001917956.1| Holliday junction DNA helicase subunit RuvB [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351098|gb|ACB85368.1| Holliday junction DNA helicase subunit RuvB [Natranaerobius thermophilus JW/NM-WN-LF] Length = 341 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/330 (54%), Positives = 244/330 (73%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M E +++R ED + S LRPR +++ GQ + +NL++FI+AA R+EALDHVL Sbjct: 1 MSSDERIITRQQVGEDYQLDSDLRPRKFDDYIGQEKVKTNLEIFIKAAVERSEALDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A ++GVN TSGP I + GDLAA+LTNLE+RDVLFIDEIHRL Sbjct: 61 YGPPGLGKTTLAHIIAEQMGVNIHVTSGPAIERPGDLAAILTNLEERDVLFIDEIHRLPR 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEILYPA+EDF +D+MVG+GPSARS++++L+ FTL+ ATTR G L++PL+DRFG+ R Sbjct: 121 SVEEILYPALEDFSIDIMVGKGPSARSLRLDLAPFTLVGATTRAGSLSSPLRDRFGVVNR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L+FY ++DL IV R A + G+ +T+E A ++A SRGTPRIA RLL+R RD+A+V Sbjct: 181 LDFYSMQDLCQIVTRSADILGIEITEEGAKKLAQSSRGTPRIANRLLKRARDYAQVKADN 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT E+AD AL L +D G D++D R + I F GGPVG++TI+A +SE + IED+ Sbjct: 241 KITAEVADKALEMLEVDSYGLDEIDRRLMHTIYNKFSGGPVGLDTIAAAISEEAETIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EP+++Q GF+QRTPRGR+L A +LG+ Sbjct: 301 YEPFLLQLGFLQRTPRGRVLTKAAKNYLGL 330 >gi|148244816|ref|YP_001219510.1| Holliday junction DNA helicase RuvB [Candidatus Vesicomyosocius okutanii HA] gi|166231568|sp|A5CW96|RUVB_VESOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|146326643|dbj|BAF61786.1| holliday junction DNA helicase RuvB [Candidatus Vesicomyosocius okutanii HA] Length = 342 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/320 (55%), Positives = 237/320 (74%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 ++ + ED I+ +RP +LE + GQ + S + +FI+AAK R + LDH L GPPGLGKTT Sbjct: 11 KDHNNEDLVITSIRPNSLENYIGQNDVKSQMMLFIKAAKKRKDTLDHCLIYGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA V+A ++ F+ TSGPV+ +AGDLAA+LT L+ D+LFIDEIHRL+ +VEE LYPA+ Sbjct: 71 LANVIANQMSTGFKKTSGPVLERAGDLAAILTKLDPYDILFIDEIHRLNYVVEETLYPAL 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 EDF+LD++VGEG ++ SV++ L FTLI ATTRVG+LT+PL+DRFGI RL FY +EDLK Sbjct: 131 EDFKLDIIVGEGLASHSVQLELPPFTLIGATTRVGMLTSPLRDRFGIIQRLQFYNVEDLK 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IV+R A + + + + A EIA RSRGTPRIA RLLRRVRDFA+V I ++IA A Sbjct: 191 MIVERSADILDIQIESKGALEIAKRSRGTPRIANRLLRRVRDFADVKANSMIHQDIAKEA 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L+ L +D+ G +QLD YL++I F GGPVG++T++ + E R +ED++EPY+IQQGF Sbjct: 251 LIILKVDEAGLEQLDRDYLSIIMNKFSGGPVGLDTLATSIGEERGTLEDMVEPYLIQQGF 310 Query: 310 IQRTPRGRLLMPIAWQHLGI 329 I RTPRGR + A+ HLG+ Sbjct: 311 IMRTPRGRSITDAAYAHLGL 330 >gi|219871187|ref|YP_002475562.1| holliday junction DNA helicase B [Haemophilus parasuis SH0165] gi|219691391|gb|ACL32614.1| holliday junction DNA helicase B [Haemophilus parasuis SH0165] Length = 308 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/303 (58%), Positives = 230/303 (75%) Query: 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 L ++ GQ +++FI+AAK R +ALDH+L GPPGLGKTTLA ++A E+GVN R+TS Sbjct: 2 LADYVGQPSVREQMEIFIKAAKLRNDALDHLLIFGPPGLGKTTLANIIANEMGVNIRTTS 61 Query: 87 GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 GPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QLD+M+GEGP+ARS Sbjct: 62 GPVLEKAGDLAAILTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARS 121 Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 +K++L FTL+ ATTR G LT+PL+DRFGI RL FY +EDL +IV R A L + + Sbjct: 122 IKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVSRSAGCLNLNLATD 181 Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266 AA EIA RSRGTPRIA RLLRRVRDFA+V + I+ +IA AL L +D GFD +D + Sbjct: 182 AAYEIARRSRGTPRIANRLLRRVRDFADVRNNGIISSDIAKQALTMLDVDSEGFDFMDRK 241 Query: 267 YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQH 326 L+ + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+ + H Sbjct: 242 LLSAVIERFDGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRIATSRTYSH 301 Query: 327 LGI 329 LG+ Sbjct: 302 LGL 304 >gi|258545751|ref|ZP_05705985.1| Holliday junction DNA helicase RuvB [Cardiobacterium hominis ATCC 15826] gi|258518996|gb|EEV87855.1| Holliday junction DNA helicase RuvB [Cardiobacterium hominis ATCC 15826] Length = 336 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/311 (57%), Positives = 234/311 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L E+ GQ + +++FI+AA AR EALDHVL GPPGLGKTT+A ++A ELGVN Sbjct: 24 VRPKRLAEYIGQSALKAQMEIFIQAALARQEALDHVLLFGPPGLGKTTMANIIAAELGVN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP++ K GDLAA+LTNLE DVLFIDEIHRLS VEE+LY AMED+++D+M+GEG Sbjct: 84 LRQTSGPILDKGGDLAAMLTNLEAHDVLFIDEIHRLSPAVEEVLYSAMEDYRIDIMIGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+ + + FTL+ ATTR GLL+ PL+DRFGI L FY +L +V R +L G+ Sbjct: 144 PAARSIILPIKPFTLVGATTRSGLLSAPLRDRFGISQHLQFYSESELTAVVLRVGELLGV 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EI R+RGTPRIA RLLRRVRD+A+V + ITR IAD AL LAID GFD Sbjct: 204 QMERDGAIEIGKRARGTPRIANRLLRRVRDYADVRGSGIITRAIADEALELLAIDHCGFD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R L +I +FGGGPVG++T++A + E R +ED++EPY+IQQG++QRTPRGR+ Sbjct: 264 NLDRRLLHIIIEHFGGGPVGLDTLAASVGEERGTLEDVVEPYLIQQGYLQRTPRGRVATA 323 Query: 322 IAWQHLGIDIP 332 A+ HLGI++P Sbjct: 324 RAYAHLGIEMP 334 >gi|307545152|ref|YP_003897631.1| Holliday junction DNA helicase B [Halomonas elongata DSM 2581] gi|307217176|emb|CBV42446.1| Holliday junction DNA helicase B [Halomonas elongata DSM 2581] Length = 340 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/308 (58%), Positives = 227/308 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L ++ GQ L +FI AA+ R E+LDH L GPPGLGKTTLA ++A E+ V Sbjct: 23 IRPRHLSDYIGQTRVREQLDIFISAARGRGESLDHTLVFGPPGLGKTTLANIIATEMDVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGPV+ KAGDLAA+LTNL+ DVLFIDEIHRLS +VEE+LYPAMEDFQLD+++GEG Sbjct: 83 LKATSGPVLEKAGDLAAMLTNLQPGDVLFIDEIHRLSAVVEEVLYPAMEDFQLDIVIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY +E+L IV R A L G+ Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYSVEELTEIVTRSAGLLGV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A E+A R+RGTPRIA RLLRRVRDFAEV + I EIAD AL L +D G D Sbjct: 203 DSDAGGATEVARRARGTPRIANRLLRRVRDFAEVRGSGHIDAEIADQALNMLHVDHHGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L + F GGPVG+++++A + E RD IED+IEPY+IQQG + RT RGR++ Sbjct: 263 HMDRRLLLAMIEKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQQGLMMRTARGRVVTR 322 Query: 322 IAWQHLGI 329 AWQH G+ Sbjct: 323 QAWQHFGL 330 >gi|122066015|sp|Q817W4|RUVB_BACCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB Length = 336 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 185/329 (56%), Positives = 242/329 (73%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLSR + DA LRP+TL ++ GQ +A NL+VFIEAAK R E LDHVL GPP Sbjct: 6 ERLLSRESAYGDAVEDFPLRPQTLRQYIGQNKAKHNLEVFIEAAKMREETLDHVLLYGPP 65 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GVN ++TSGP I + GDLAA+LT L+ DVLFIDEIHRL +EE Sbjct: 66 GLGKTTLANIIANEMGVNVKTTSGPAIGRPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 125 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ R+ +Y Sbjct: 126 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRVEYY 185 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRVRDFA+V T+T Sbjct: 186 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 245 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EI AL L +DK+G D +D + L I F GGPVG+ET+SA + E IED+ EPY Sbjct: 246 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSAPIGEESHTIEDVYEPY 305 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P+A++H G++IP Sbjct: 306 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 334 >gi|326390113|ref|ZP_08211674.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus JW 200] gi|325993761|gb|EGD52192.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus JW 200] Length = 338 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/323 (55%), Positives = 242/323 (74%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E +L+++ +QEDA LRPR L E+ GQ + LK++IEAAK R E LDHVL GPPG Sbjct: 3 ERILTQSFTQEDASEYSLRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA V++ E+GV + TSGP I K+ DLAA+LTNL++ D+LFIDEIHRL+ VEEI Sbjct: 63 LGKTTLATVISNEMGVGIKITSGPAIEKSRDLAAILTNLQENDILFIDEIHRLNRSVEEI 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF+LD+++G+GPSARS++++L RFTLI ATTR L+T+PL+DRFG+ RL++Y Sbjct: 123 LYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINRLDYYS 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+LK I++R A + + + ++AA EIA RSRGTPRIA RLL+RVRDFA+V I + Sbjct: 183 VEELKEIIKRSANILNIGIDEDAALEIAKRSRGTPRIANRLLKRVRDFAQVRGNGYIDFK 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 + AL L +D+MG + +D + L I FGGGPVGI+ I+A + E D IED+ EPY+ Sbjct: 243 TSKEALDVLGVDEMGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPYL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327 +Q GF+ RTPRGR++ +A+ +L Sbjct: 303 LQIGFLNRTPRGRVVTKLAYDYL 325 >gi|320120442|gb|EFE27854.2| holliday junction DNA helicase RuvB [Filifactor alocis ATCC 35896] Length = 337 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/333 (53%), Positives = 243/333 (72%), Gaps = 1/333 (0%) Query: 3 DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 D E L+S + ED + LRPRTLEE+ GQ + S L +FI+AA+ R EALDHVL G Sbjct: 4 DNERLISSSFQTEDIETDYSLRPRTLEEYIGQDKVKSQLDIFIQAARLRGEALDHVLLYG 63 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTL+ ++A E+ N + TSGP I K+GDLAA+LTNL D DVLFIDEIHRL+ V Sbjct: 64 PPGLGKTTLSYIIANEMSANIKITSGPAIEKSGDLAAILTNLSDGDVLFIDEIHRLNRTV 123 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMED LD+++G+GPSARS++I+L +FTLI ATTR G+LT+PL+DRFG+ + L Sbjct: 124 EEILYPAMEDRCLDIIIGKGPSARSIRIDLPKFTLIGATTRSGMLTSPLRDRFGVILNLE 183 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 Y +LK I+ R A++ + + ++AA EIA RSRGTPRIA RLL+RVRD+A+V I Sbjct: 184 LYSATNLKKIISRSAQILEIYIEEQAAEEIAKRSRGTPRIANRLLKRVRDYAQVKGDGNI 243 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 + I +LL +D+ G D +D + L I + F GGPVGIET++A + E R+ +E++ E Sbjct: 244 SLAITQESLLVFEVDEEGLDIVDKKILCSIIQKFSGGPVGIETLTASIGEDRETVEEVYE 303 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 PY+IQ+GF+ RTPRGR+ +++HLG ++P + Sbjct: 304 PYLIQKGFLNRTPRGRMATEQSYRHLGFEMPDK 336 >gi|300112853|ref|YP_003759428.1| Holliday junction DNA helicase RuvB [Nitrosococcus watsonii C-113] gi|299538790|gb|ADJ27107.1| Holliday junction DNA helicase RuvB [Nitrosococcus watsonii C-113] Length = 348 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 184/325 (56%), Positives = 239/325 (73%), Gaps = 1/325 (0%) Query: 6 GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 GL+S S+ + + LRP L ++ GQ + ++VFI AA+AR EALDHVL GPPG Sbjct: 6 GLVSPQESRGEKAVEFSLRPSKLADYIGQPQVQEQMEVFIPAARARHEALDHVLIFGPPG 65 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTL+ ++A EL VN R TSGPV+ + GDLAALLTNLE RDVLFIDEIHRLS +VEE+ Sbjct: 66 LGKTTLSHIIANELEVNLRQTSGPVLERPGDLAALLTNLEPRDVLFIDEIHRLSPVVEEV 125 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED Q+D+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY Sbjct: 126 LYPAMEDRQIDIMIGEGPAARSIKLDLVPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYA 185 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 ++ L IV+R A++ G+ + E A EIA RSRGTPRIA RLLRRVRD+AE+ +TR+ Sbjct: 186 VDHLVLIVERTARILGMTMEKEGALEIARRSRGTPRIANRLLRRVRDYAEIKVDGRVTRQ 245 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A AL L +D GFD +D + L + F GGPVG+++++A + E R IED+IEP++ Sbjct: 246 VAQKALDLLDVDSHGFDTMDRKLLLAMIEKFDGGPVGVDSLAAAIGEERGTIEDVIEPFL 305 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329 +QQGFI RTPRGR A+ H G+ Sbjct: 306 LQQGFIMRTPRGRTATRHAYLHFGL 330 >gi|58698306|ref|ZP_00373223.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of Drosophila ananassae] gi|225630964|ref|YP_002727755.1| Holliday junction DNA helicase RuvB [Wolbachia sp. wRi] gi|254767451|sp|C0R4X2|RUVB_WOLWR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|58535179|gb|EAL59261.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of Drosophila ananassae] gi|225592945|gb|ACN95964.1| Holliday junction DNA helicase RuvB [Wolbachia sp. wRi] Length = 324 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/308 (58%), Positives = 237/308 (76%), Gaps = 2/308 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L++F GQ + NLKVFI AA+ R EALDHVL GPPGLGKTTLAQ+V++EL V+ Sbjct: 19 IRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIVSKELRVS 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR+TSGP+++KAGDLAA+LT L +DVLFIDEIHRL+ +EE+LY AMEDF LD++VGEG Sbjct: 79 FRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDILVGEG 138 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PS R+++I+L FTLI ATTR+GLL+ PL+DRFGIP+ L FY E+L I++RGA++ Sbjct: 139 PSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKRGARVLSA 198 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA EIA R+RGTPRIA RLLRR+RDF EV K IT E+AD+ LL+L +DKMG + Sbjct: 199 EIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLGVDKMGLN 258 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD+ YL + GPVGI+TIS LSE IE+ +EPY+I+ F++RTPRGR+L Sbjct: 259 KLDMNYLRFLFNT--SGPVGIDTISIALSEDVGNIEETVEPYLIKISFVKRTPRGRVLTD 316 Query: 322 IAWQHLGI 329 A ++L + Sbjct: 317 QAKEYLSL 324 >gi|261855149|ref|YP_003262432.1| Holliday junction DNA helicase RuvB [Halothiobacillus neapolitanus c2] gi|261835618|gb|ACX95385.1| Holliday junction DNA helicase RuvB [Halothiobacillus neapolitanus c2] Length = 348 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 185/332 (55%), Positives = 239/332 (71%), Gaps = 1/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR + + +V++++A LRP+ L ++ GQ +++FI AA+ R EALDHVL Sbjct: 1 MTDRV-ITAESVTEDEAIERALRPKRLVDYVGQPAVVEQMEIFIPAARQRGEALDHVLIF 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+GV + TSGPV+ + GDLAALLTNLE DVLFIDEIHRLS + Sbjct: 60 GPPGLGKTTLANIIAHEMGVGLKQTSGPVLERPGDLAALLTNLEPNDVLFIDEIHRLSAV 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMED Q+D+M+GEGP+ARS+K++L FTL+ ATTR G+LT PL+DRFGI RL Sbjct: 120 VEEILYPAMEDHQIDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTGPLRDRFGIIQRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY + DL IV R A+L G+++ A EIA R+RGTPRIA RLLRRVRDFAEV T Sbjct: 180 EFYSVADLTRIVSRSAQLMGVSIDAGGAQEIAARARGTPRIANRLLRRVRDFAEVRGNGT 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + + +A+AAL L +D GFDQ D R L + F GGPVG++ I+A + E RD IED++ Sbjct: 240 VDQPMANAALDLLQVDARGFDQQDRRLLEALIHKFDGGPVGLDNIAAAIGEARDTIEDVL 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EP++IQQGF+ RT RGR+ + H G P Sbjct: 300 EPFLIQQGFLVRTARGRMATRQTYAHFGFRPP 331 >gi|290967871|ref|ZP_06559421.1| Holliday junction DNA helicase RuvB [Megasphaera genomosp. type_1 str. 28L] gi|290782010|gb|EFD94588.1| Holliday junction DNA helicase RuvB [Megasphaera genomosp. type_1 str. 28L] Length = 338 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/312 (58%), Positives = 236/312 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+E+ GQ +A NL+VFI AAK R EALDHVL GPPGLGKTTLA +VA E+ V+ Sbjct: 21 LRPHYLKEYIGQQQAKQNLEVFIGAAKLRQEALDHVLLYGPPGLGKTTLAGIVANEMNVS 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I + GDLAALLTNL++RDVLFIDEIHRLS VEE+LY AMED+ LD+++G+G Sbjct: 81 LRITSGPAIERPGDLAALLTNLQERDVLFIDEIHRLSHSVEEVLYAAMEDYALDIVIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV+I+L FTL+ ATT+VG L PL+DRFG+ RL FY+ E+L I+QR A + + Sbjct: 141 PSARSVRIDLPPFTLVGATTQVGRLAPPLRDRFGVICRLEFYKPEELVLIIQRTATILNI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ A EIA RSRGTPRIA RLL+RVRDFA++A I ++A +AL RL +D G D Sbjct: 201 AIDVSGAMEIARRSRGTPRIANRLLKRVRDFAQMAGETFIHEKMAASALTRLEVDSCGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D + L +I F GGPVG++TI+A +SE DA+ED+ EP+++QQGF+ RTPRGR++ Sbjct: 261 RTDRKVLEIIIEKFAGGPVGLDTIAAAISESVDAVEDVYEPFLMQQGFLHRTPRGRVVTE 320 Query: 322 IAWQHLGIDIPH 333 A++HLG+ +P Sbjct: 321 AAYRHLGLPLPQ 332 >gi|160872675|ref|ZP_02062807.1| holliday junction DNA helicase RuvB [Rickettsiella grylli] gi|159121474|gb|EDP46812.1| holliday junction DNA helicase RuvB [Rickettsiella grylli] Length = 351 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 184/327 (56%), Positives = 234/327 (71%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L S +ED I +RP L ++ GQ C + +FI AA+AR EALDHVL VGPPGL Sbjct: 7 LTSAKKKREDEKIYPRIRPVALADYLGQTSVCEQMTLFIHAARARQEALDHVLIVGPPGL 66 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+ V+ + TSGPV+ +AGDLAALLT+LE +VLFIDEIHRLS ++EEIL Sbjct: 67 GKTTLATIIAHEMAVSLKQTSGPVLERAGDLAALLTHLEPNEVLFIDEIHRLSPVIEEIL 126 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPA+ED+QLD+M+GEGP+ARS+K++L FTLI ATTR GLLT+PL+DRFGI RL FY + Sbjct: 127 YPALEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLTFYSV 186 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 DL IV R A + + + A EIA R+RGTPRIA RLLRRVRDFAEV I + + Sbjct: 187 ADLCRIVTRSAGILKVTIDSMGANEIAKRARGTPRIANRLLRRVRDFAEVKSDGKIDQSL 246 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +DK GFDQ D + L + F GGPVG+++++A + E RD IED+IEPY+I Sbjct: 247 AAQALDLLEVDKEGFDQQDRKLLLTLIEKFDGGPVGLDSLAAAIGEERDTIEDVIEPYLI 306 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332 QQ FI RTPRGR+ + H + +P Sbjct: 307 QQAFIMRTPRGRVATKKTFSHFSLAMP 333 >gi|172058106|ref|YP_001814566.1| Holliday junction DNA helicase RuvB [Exiguobacterium sibiricum 255-15] gi|229564228|sp|B1YJR1|RUVB_EXIS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|171990627|gb|ACB61549.1| Holliday junction DNA helicase RuvB [Exiguobacterium sibiricum 255-15] Length = 331 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/325 (56%), Positives = 239/325 (73%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E +LS + ED + LRP+TL+++ GQ +A NL VFI+AAK R E LDHVL GPPG Sbjct: 3 ERILSESAHAEDQEEWSLRPQTLDQYIGQEKAKGNLSVFIQAAKIRQETLDHVLLYGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A E+GV ++T+GP I + GDLAA+L++LE DVLFIDEIHRLS +EEI Sbjct: 63 LGKTTLATIIANEMGVGIKTTAGPAIERPGDLAAILSSLEPGDVLFIDEIHRLSRSIEEI 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED+ LD+++G+G ARSV+I+L FTL+ ATTR G+L+ PL+DRFG+ ++L +Y Sbjct: 123 LYPAMEDYCLDIVIGQGELARSVRIDLPPFTLVGATTRAGMLSAPLRDRFGVTLKLEYYT 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 + +L IV R ++L G AA IA+RSRGTPR+A RLLRRVRDFA+VAH I Sbjct: 183 MPELAAIVTRTSRLFGFEADRMAAEAIALRSRGTPRVANRLLRRVRDFAQVAHQTAIDAT 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A AL RL +D +G D +D R L +A F GGPVG+ETI+A + E IED+ EPY+ Sbjct: 243 LATGALDRLHVDALGLDDVDHRLLRSLAERFAGGPVGLETIAATIGEDAQTIEDVYEPYL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329 +QQGF+QRTPRGR+L P A +HLG+ Sbjct: 303 LQQGFLQRTPRGRVLTPFARRHLGL 327 >gi|158320754|ref|YP_001513261.1| Holliday junction DNA helicase B [Alkaliphilus oremlandii OhILAs] gi|167012665|sp|A8MHI3|RUVB_ALKOO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|158140953|gb|ABW19265.1| Holliday junction DNA helicase RuvB [Alkaliphilus oremlandii OhILAs] Length = 335 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/330 (55%), Positives = 239/330 (72%), Gaps = 3/330 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR +LS V ED +I LRP+ L ++ GQ + +K+FIEAA R EALDHVL Sbjct: 4 MEDR--ILSNTVRNEDYEIEGGLRPKFLNDYIGQDKVKERMKIFIEAALHRNEALDHVLL 61 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A E+ VN + TSGPVI +AGDLAA+LTNL + DVLFIDEIHR++ Sbjct: 62 YGPPGLGKTTLSNIIANEMNVNIKITSGPVIERAGDLAAILTNLSENDVLFIDEIHRINR 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT PL+DRFG+ + Sbjct: 122 TVEEVLYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTGPLRDRFGVIAK 181 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L Y+ E LK I++R A + + + D A EIA RSRGTPRIA RLL+RVRDFA+V Sbjct: 182 LELYDTEQLKEIIRRSAYILNVYIDDNGAKEIASRSRGTPRIANRLLKRVRDFAQVRGDG 241 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT EIA AL L ID +G D D + + + NFGGGPVG++T++A E R+ IED+ Sbjct: 242 RITLEIAQEALELLEIDLLGLDNTDKKMIETMIHNFGGGPVGLDTLAAATGEERNTIEDV 301 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GFI RTPRGR+++ A+ H I Sbjct: 302 YEPYLLQIGFINRTPRGRIVLEKAYNHFNI 331 >gi|42520917|ref|NP_966832.1| Holliday junction DNA helicase B [Wolbachia endosymbiont of Drosophila melanogaster] gi|47606092|sp|P61539|RUVB_WOLPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|42410658|gb|AAS14766.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of Drosophila melanogaster] Length = 326 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/308 (58%), Positives = 236/308 (76%), Gaps = 2/308 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L++F GQ + NLKVFI AA+ R EALDHVL GPPGLGKTTLAQ+V++EL V+ Sbjct: 19 IRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIVSKELRVS 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR+TSGP+++KAGDLAA+LT L +DVLFIDEIHRL+ +EE+LY AMEDF LD++VGEG Sbjct: 79 FRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDILVGEG 138 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PS R+++I+L FTLI ATTR+GLL+ PL+DRFGIP+ L FY E+L I++RGA++ Sbjct: 139 PSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKRGARVLSA 198 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA EIA R+RGTPRIA RLLRR+RDF EV K IT E+AD+ LL+L +DKMG + Sbjct: 199 EIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLGVDKMGLN 258 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD+ YL + GPVGI+TIS LSE IE+ +EPY+I+ F++RTPRGR+L Sbjct: 259 KLDMNYLRFLFNT--SGPVGIDTISIALSEDVGNIEETVEPYLIKISFVKRTPRGRVLTD 316 Query: 322 IAWQHLGI 329 A ++L Sbjct: 317 QAKEYLSF 324 >gi|126207772|ref|YP_001052997.1| Holliday junction DNA helicase RuvB [Actinobacillus pleuropneumoniae L20] gi|165975739|ref|YP_001651332.1| Holliday junction DNA helicase RuvB [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|126096564|gb|ABN73392.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875840|gb|ABY68888.1| Holliday junction DNA helicase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 294 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/290 (61%), Positives = 226/290 (77%) Query: 40 LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99 +++FI+AAK R EALDH+L GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+ Sbjct: 1 MEIFIKAAKLRDEALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAM 60 Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 LTNLE DVLFIDEIHRLS +EE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ A Sbjct: 61 LTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA 120 Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219 TTR G LT+PL+DRFGI RL FY ++DL +IV+R A L ++ + A E+A RSRGTP Sbjct: 121 TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTP 180 Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279 RIA RLLRRVRD+A+V + IT +IA AL L +D GFD +D++ L I F GGP Sbjct: 181 RIANRLLRRVRDYADVRNNGVITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGP 240 Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 VG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR+ + HLGI Sbjct: 241 VGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATSRTYAHLGI 290 >gi|301060141|ref|ZP_07201008.1| Holliday junction DNA helicase RuvB [delta proteobacterium NaphS2] gi|300445653|gb|EFK09551.1| Holliday junction DNA helicase RuvB [delta proteobacterium NaphS2] Length = 342 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/310 (58%), Positives = 234/310 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL E+ GQ + NL VFI AAK R EALDHVLF G PGLGKT+L+ ++A ELGVN Sbjct: 21 LRPKTLAEYVGQTDMKRNLSVFIAAAKGREEALDHVLFHGSPGLGKTSLSHIIAGELGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 RSTSGPVI + GDLAA+LTNL+ +DVLFIDEIHRL+ +VEEILYPAMED++LD+++G+G Sbjct: 81 IRSTSGPVIERPGDLAAILTNLQPKDVLFIDEIHRLNHVVEEILYPAMEDYELDIIIGQG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR++KI L FTL+ ATTR GLLT PL+DRFG+ +RL+FYE EDL IV R A + + Sbjct: 141 PSARTMKIPLPPFTLVGATTRAGLLTPPLRDRFGVILRLDFYEPEDLYKIVVRSAGILEI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DE A EIA R+RGTPRIA RLLRRVRDFAEV IT+++A AL L +D G D Sbjct: 201 PIKDEGALEIAKRARGTPRIANRLLRRVRDFAEVEADGVITQKVASRALDMLEVDDQGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + I F GGP+G+ ++ A + E +D IED+ EP++IQ G+I+RTP+GR+ Sbjct: 261 KMDRFIMHTIIEKFDGGPIGLSSLCAAVGEEKDTIEDVYEPFLIQSGYIKRTPQGRVATR 320 Query: 322 IAWQHLGIDI 331 A+ HL +++ Sbjct: 321 RAYLHLHLEV 330 >gi|326795235|ref|YP_004313055.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinomonas mediterranea MMB-1] gi|326545999|gb|ADZ91219.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinomonas mediterranea MMB-1] Length = 338 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 181/334 (54%), Positives = 245/334 (73%), Gaps = 3/334 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++++ ++S ++ + +RP+ L+E+ GQ +++FI+AA+ R+E LDH L Sbjct: 1 MIEQDRIISSETQGSESQVDRAIRPQMLDEYIGQPIVREQMEIFIQAARQRSEPLDHTLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+G + ++TSGPV+ +AGDLAALLTNLED DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGADIKTTSGPVLERAGDLAALLTNLEDGDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+KI + FTL+ ATTR GLLT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKIEIPPFTLVGATTRAGLLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAAC-EIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 L FY+++ L TIV R A G+ V DE+ C E+A RSRGTPRIA RLLRRVRD A+V Sbjct: 181 LEFYDVQSLTTIVGRSASKMGV-VLDESGCFEVARRSRGTPRIANRLLRRVRDVAQVGGE 239 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 K + ++A AL L++D GFD LD R L + F G PVG+++I+A + E +D IED Sbjct: 240 KVVGEKVARRALDMLSVDSQGFDHLDRRMLLTMIEKFDGRPVGLDSIAAAVGEDKDTIED 299 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +IEP++IQQGF+ RTPRGR + A++H +P Sbjct: 300 VIEPFLIQQGFVIRTPRGRQVTKRAYEHFNYQLP 333 >gi|121535580|ref|ZP_01667387.1| Holliday junction DNA helicase RuvB [Thermosinus carboxydivorans Nor1] gi|121305820|gb|EAX46755.1| Holliday junction DNA helicase RuvB [Thermosinus carboxydivorans Nor1] Length = 338 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/308 (58%), Positives = 230/308 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E+ GQ + NL VFI+AA R EALDHVL GPPGLGKTTLA ++A ELGVN Sbjct: 20 LRPRRLAEYIGQDQIKHNLTVFIQAAMTRGEALDHVLLYGPPGLGKTTLASIIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I + GDLAALLTNL ++DVLFIDEIHRL VEEILY AMED+ LD+++G+G Sbjct: 80 LRITSGPAIERPGDLAALLTNLGEKDVLFIDEIHRLPRSVEEILYSAMEDYALDIIIGKG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++++L RFTL+ ATTR G L +PL+DRFG+ RL +Y+++ L IV+R A + + Sbjct: 140 PSARSIRLDLPRFTLVGATTRAGALASPLRDRFGVICRLEYYDVKQLVCIVKRAADILNI 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ + A EIA RSRGTPR+A RLL+RVRDFA+V IT +AD AL RL +D+ G D Sbjct: 200 AIDAQGAEEIARRSRGTPRVANRLLKRVRDFAQVTGDGVITAALADEALARLDVDQCGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D L +I F GGPVG++T++A +SE D +ED+ EP+++Q GFIQRTPRGR+ P Sbjct: 260 RTDRTLLRIIIEKFNGGPVGLDTLAAAISEETDTVEDVYEPFLLQLGFIQRTPRGRVATP 319 Query: 322 IAWQHLGI 329 A+ HLGI Sbjct: 320 AAYHHLGI 327 >gi|317057203|ref|YP_004105670.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 7] gi|315449472|gb|ADU23036.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 7] Length = 345 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/317 (56%), Positives = 237/317 (74%), Gaps = 1/317 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + +D +ISL RP TL E+ GQ + N+K++I+AAK R ++LDHVL GPPGLGKTTLA Sbjct: 22 TTDDFEISL-RPLTLAEYIGQEKVKENMKIYIDAAKRRGDSLDHVLLYGPPGLGKTTLAN 80 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+GVN R+TSGP I K GDLAALLTNLE DVLFIDEIHRLS VEEILYPAMED+ Sbjct: 81 IIAHEMGVNIRTTSGPAIEKPGDLAALLTNLEKGDVLFIDEIHRLSRQVEEILYPAMEDY 140 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 LD+++G+GP+ARS++I L++FTLI ATTR G L+ PL+DRFG+ + + Y +E+L IV Sbjct: 141 ALDIIMGKGPAARSIRIELNKFTLIGATTRSGQLSAPLRDRFGMLMHMEMYSVEELADIV 200 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A + G++ D+ A EIA R+R TPRIA R L+RVRDFAEV IT++IA AL R Sbjct: 201 KRSATILGVSCDDDGATEIAARARCTPRIANRYLKRVRDFAEVIGNGRITQDIAKIALNR 260 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 + +DK+G D LD R L MI + + GGPVG+ T++A + E +ED+ EPY++Q GF+ + Sbjct: 261 MEVDKLGLDSLDRRLLEMIIKGYNGGPVGLSTLAAAIGEEAVTLEDVCEPYLMQLGFLAK 320 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR +A+ HLGI Sbjct: 321 TPRGRCATQLAYDHLGI 337 >gi|268608396|ref|ZP_06142123.1| Holliday junction DNA helicase RuvA [Ruminococcus flavefaciens FD-1] Length = 352 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/329 (55%), Positives = 243/329 (73%), Gaps = 1/329 (0%) Query: 7 LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S +QED+DI + LRP+TL E+ GQ +A NL ++IEAAK R+E LDHVL GPPGL Sbjct: 13 VISPENTQEDSDIEVSLRPQTLHEYIGQDKAKENLAIYIEAAKRRSEPLDHVLLYGPPGL 72 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A ELGVN R T+GP I K GDL +LLT+L D DVLFIDEIHRLS VEEIL Sbjct: 73 GKTTLSGIIAHELGVNLRVTTGPAIEKPGDLVSLLTSLSDNDVLFIDEIHRLSRAVEEIL 132 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPA+ED +D+++G+GP+ARS++++L FTLI ATTR G L+ PL+DRFG+ RL Y Sbjct: 133 YPALEDRVIDIIIGKGPAARSIRMDLKPFTLIGATTRAGQLSAPLRDRFGVVQRLELYTK 192 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E L I++R A + G+ T + A EIA R+RGTPRIA RLL+RVRDFA+V IT+EI Sbjct: 193 EQLTDIIRRSAMILGIPCTADGAAEIAGRARGTPRIANRLLKRVRDFADVMGNGQITQEI 252 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL RL ID +G D LD R L MI + +GGGPVG+ET+++ ++E +ED+ EP+++ Sbjct: 253 ASIALSRLEIDNLGLDGLDRRMLEMIIKGYGGGPVGLETLASAINEESVTLEDVCEPFLM 312 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 Q GF+ RTPRGR+ +A++HLG P + Sbjct: 313 QLGFLGRTPRGRVATRLAYEHLGYSQPEQ 341 >gi|218888288|ref|YP_002437609.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759242|gb|ACL10141.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 334 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/308 (58%), Positives = 236/308 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L++F GQ E +NLKVF+ AA R +A+DH+LF G PGLGKTTLAQ++A ELGVN Sbjct: 25 VRPRSLDDFIGQDELRANLKVFVAAALERGQAMDHLLFYGNPGLGKTTLAQIIAAELGVN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 STSGPV+ ++GDLAA+LTNL D+LF+DEIHR+ + VEE+LYPA+EDF+LDL++G+G Sbjct: 85 LVSTSGPVLERSGDLAAILTNLGRHDILFVDEIHRMPVAVEEVLYPALEDFKLDLVIGQG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+VKI+L FTL+ ATTR+GLL++PL+DRFGI RL FY DL IV R A++ G Sbjct: 145 PGARTVKIDLEPFTLVGATTRIGLLSSPLRDRFGIISRLEFYSPADLARIVTRTARILGA 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T E A EI RSRGTPRIA RLLRRVRDFA V TIT E A AAL R+ +D+ G D Sbjct: 205 NLTPEGAVEIGRRSRGTPRIANRLLRRVRDFAAVHGNGTITPEQASAALGRMDVDESGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + L+++ +FGGGPVG++T++ SE IED+ EPY+IQ GF++RTPRGR+ Sbjct: 265 QMDRKLLSVLIEHFGGGPVGVKTLAVACSEEVRTIEDIYEPYLIQCGFLKRTPRGRVATA 324 Query: 322 IAWQHLGI 329 A++HL + Sbjct: 325 KAYRHLNL 332 >gi|225018932|ref|ZP_03708124.1| hypothetical protein CLOSTMETH_02883 [Clostridium methylpentosum DSM 5476] gi|224948312|gb|EEG29521.1| hypothetical protein CLOSTMETH_02883 [Clostridium methylpentosum DSM 5476] Length = 352 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/335 (54%), Positives = 243/335 (72%), Gaps = 6/335 (1%) Query: 1 MMDREG-----LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL 54 M DRE + + + S ED D+ LRP+TL E+ GQ +A NL ++IEAA+ R EAL Sbjct: 9 MFDRETDFENRITTPDFSPEDVDVEFTLRPKTLGEYIGQDKAKENLSIYIEAARQRGEAL 68 Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 DHVL GPPGLGKTTL+ ++A E+ VN R TSGP I K GDLAALL+NL + DVLFIDEI Sbjct: 69 DHVLLYGPPGLGKTTLSMIIANEMNVNIRVTSGPAIEKPGDLAALLSNLNENDVLFIDEI 128 Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174 HRLS VEE+LYPAMED+ LD+++G+GP+ARS++I+L +FTL+ ATTR G LT PL+DRF Sbjct: 129 HRLSRAVEEVLYPAMEDYALDIIIGKGPAARSIRIDLPKFTLVGATTRAGQLTAPLRDRF 188 Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 G+ +RL Y E L I+ R A L + E A E+A RSRGTPRIA RLL+RVRDFA+ Sbjct: 189 GVILRLELYTDEQLCEIILRSAALLQIPCDREGALELARRSRGTPRIANRLLKRVRDFAQ 248 Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294 V +++++ +L +L ID++G + LD R L+ + +N+GGGPVG+ETI+A L E Sbjct: 249 VLGDGVVSKDVVGTSLDKLEIDELGLEPLDRRMLSTMIKNYGGGPVGLETIAAVLGEEAV 308 Query: 295 AIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 IED+ EPY++Q GF+ RTPRGR + +A+QHLG+ Sbjct: 309 TIEDVYEPYLMQLGFLSRTPRGRCVTALAYQHLGL 343 >gi|253578704|ref|ZP_04855975.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39B_FAA] gi|251849647|gb|EES77606.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39BFAA] Length = 334 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 172/329 (52%), Positives = 249/329 (75%), Gaps = 1/329 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ +V++ED + LRP+TL+++ GQ + S LKV+IEAAK R +ALDHVLF GPPGL Sbjct: 5 IITTDVTEEDFSLEGNLRPQTLDDYIGQEKTKSTLKVYIEAAKQRHDALDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+GV+ + TSGP I K G++AA+L NL++ D+LF+DEIHRL+ VEE+L Sbjct: 65 GKTTLSGIIANEMGVHMKVTSGPAIEKPGEMAAILNNLQEGDILFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+M+G+G SARS++++L +FTL+ ATTR GLL+ PL+DRFG+ L FY Sbjct: 125 YPAMEDYAIDIMIGKGASARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVMHHLEFYTH 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LKTI+ R A++ G+ + ++ A EIA RSRGTPR+A RLL+RVRDFA+V + IT ++ Sbjct: 185 EELKTIIIRSAQVLGVEIDEKGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYDGRITYDV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +D+ G D++D R L + NF GGPVG+ET++A + E +ED+ EPY++ Sbjct: 245 ACFALNLLEVDQYGLDKIDRRILQTMIVNFQGGPVGLETLAAAIGEDSGTLEDVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 Q GF+ RTPRGR+ +A++HLG +P + Sbjct: 305 QNGFLNRTPRGRMASALAYEHLGYQMPEK 333 >gi|86135095|ref|ZP_01053677.1| Holliday junction ATP-dependent DNA helicase RuvB [Polaribacter sp. MED152] gi|85821958|gb|EAQ43105.1| Holliday junction ATP-dependent DNA helicase RuvB [Polaribacter sp. MED152] Length = 340 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 185/321 (57%), Positives = 235/321 (73%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 + + S E+ D+ LRP + ++FTGQ +A NLK+F+EAA R EALDH LF GPPGLGK Sbjct: 9 NSHYSNEELDVEKKLRPLSFDDFTGQDQALENLKIFVEAANQRGEALDHALFHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A EL V + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY Sbjct: 69 TTLAHILANELQVGIKVTSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+++D+M+ GP+AR+V+INL FTLI ATTR GLLT P++ RFGI RL++Y E Sbjct: 129 AMEDYKIDIMIESGPNARTVQINLEPFTLIGATTRSGLLTAPMRARFGISSRLHYYSTEL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TI+QR A + + ++ EAA EIA RSRGTPRIA LLRRVRDFA++ IT EIA Sbjct: 189 LTTIIQRSASILQVPISMEAAVEIAGRSRGTPRIANALLRRVRDFAQIKGDGKITIEIAK 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D G D++D + L I F GGPVGI TI+ +SE + IE++ EP++IQQ Sbjct: 249 YALKALHVDAHGLDEMDNKILATIIDKFKGGPVGISTIATAVSENTETIEEVYEPFLIQQ 308 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 GFI RTPRGR + +A++HLG Sbjct: 309 GFIMRTPRGREVTELAYKHLG 329 >gi|85712319|ref|ZP_01043370.1| Holliday junction resolvasome, helicase subunit [Idiomarina baltica OS145] gi|85693946|gb|EAQ31893.1| Holliday junction resolvasome, helicase subunit [Idiomarina baltica OS145] Length = 322 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 176/295 (59%), Positives = 227/295 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++TGQ +++FIEAA+ R EALDH+L GPPGLGKTTLA +VA EL VN Sbjct: 28 IRPKKLADYTGQKHVVEQMEIFIEAARKREEALDHLLIFGPPGLGKTTLANIVANELDVN 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGPV+ KAGDLAALLTNL+ DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG Sbjct: 88 IKTTSGPVLEKAGDLAALLTNLDAHDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 147 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTLI ATTR G LT+PL+DRFGI RL FY++E+L I++R A + Sbjct: 148 PAARSIKLDLPPFTLIGATTRAGALTSPLRDRFGIVQRLEFYQVEELTEIIKRSAHYMNV 207 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA RSRGTPRIA RLLRRVRD+AEV + +++A AAL + +D+ GFD Sbjct: 208 NMDVGGAQEIARRSRGTPRIANRLLRRVRDYAEVKADGKVNQDVASAALTMVDVDQAGFD 267 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316 +D + L I F GGPVG++ ++A + E +D IED++EPY+IQQGF+QRTPRG Sbjct: 268 YMDRKLLLAIMEKFLGGPVGLDNLAAAIGEEKDTIEDVLEPYLIQQGFLQRTPRG 322 >gi|167043583|gb|ABZ08278.1| putative Holliday junction DNA helicase ruvB C-terminal domain [uncultured marine microorganism HF4000_APKG2K17] Length = 354 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 179/311 (57%), Positives = 233/311 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+++ GQ E NL VFI AA R ALDHVL GPPGLGKTTLA + ARE+ V Sbjct: 36 LRPQRLQDYIGQNEIKENLHVFIGAAIKRGHALDHVLLSGPPGLGKTTLANIFAREMEVQ 95 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 RSTSGPVI + GDLAA+LTNL+ +LFIDEIHRL+ +VEE+LY AMEDF LD+++GEG Sbjct: 96 LRSTSGPVIERQGDLAAILTNLDPGSILFIDEIHRLNRVVEEVLYGAMEDFTLDIIIGEG 155 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+VKI+L FTL+ ATTR GLL++PL++RFGI RLNFY+ EDLKTI+ R A L G+ Sbjct: 156 PGARTVKIDLPHFTLVGATTRAGLLSSPLRERFGIQFRLNFYDAEDLKTIILRAASLLGI 215 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +EA+ E+A R+RGTPRIA RLL+R RDFA++ + IT + + +L R+ ID G D Sbjct: 216 EIVEEASLELARRARGTPRIANRLLKRCRDFADMETSGVITLPLVERSLERMRIDLEGLD 275 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D L I + FGGGPVG+ T+SA +S+ +D IED+ EP+++ +GF+QRTPRGR+ Sbjct: 276 QMDRHILETIIKKFGGGPVGLSTLSAAVSDEKDTIEDVYEPFLLLKGFLQRTPRGRVATE 335 Query: 322 IAWQHLGIDIP 332 A+QHL I P Sbjct: 336 RAYQHLEISAP 346 >gi|239827858|ref|YP_002950482.1| Holliday junction DNA helicase RuvB [Geobacillus sp. WCH70] gi|259495669|sp|C5D5E8|RUVB_GEOSW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|239808151|gb|ACS25216.1| Holliday junction DNA helicase RuvB [Geobacillus sp. WCH70] Length = 333 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 243/329 (73%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E L+S +V +ED + LRP+ L E+ GQ + NLKVFIEAAK R E LDHVL GPP Sbjct: 3 ERLVSGDVHREDVSLEYSLRPKFLHEYIGQDKVKDNLKVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GV+ R+TSGP I + GDLAA+LT+LE DVLFIDEIHRL VEE Sbjct: 63 GLGKTTLAAIIANEMGVHLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLHRSVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMED+ LD+++G+G +ARS++I+L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDYCLDIIIGKGQTARSIRIDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E L IV R A++ + +T EAA EIA RSRGTPRIA RLLRRVRDFA+V TIT Sbjct: 183 TTEHLTQIVMRTAEILHVDITAEAAVEIARRSRGTPRIANRLLRRVRDFAQVRGDGTITF 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +A AL L +D++G D +D + + I FGGGPVGI+TI+A + E IED+ EPY Sbjct: 243 LLAKEALELLQVDRLGLDHIDHKLIKAIMEKFGGGPVGIDTIAATIGEEAQTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ PIA++H G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPIAYEHFGMEVP 331 >gi|332977851|gb|EGK14604.1| crossover junction ATP-dependent DNA helicase RuvB [Desmospora sp. 8437] Length = 332 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 178/329 (54%), Positives = 242/329 (73%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++S + S ED + LRPR L+++ GQ NLKV+IEAAK R + LDHVL GPP Sbjct: 3 ERMISSHFSAEDEPMEFSLRPRYLDDYIGQTRVKENLKVYIEAAKMRRDPLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+GV R+TSGP I + GDLAA+LTNL+ D+LFIDEIHRL+ VEE Sbjct: 63 GLGKTTLSHIIANEMGVQVRTTSGPAIERPGDLAAILTNLQQGDLLFIDEIHRLNRSVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L++PL+DRFG+ RL Y Sbjct: 123 VLYPAMEDFALDIVIGKGPSARSVRLDLPPFTLVGATTRAGSLSSPLRDRFGVVSRLEHY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E+L IV R A L G+++ ++ A EIA R+RGTPR++ RLL+RVRDF +V IT Sbjct: 183 TTEELSLIVMRAADLLGVSIREDGAEEIACRARGTPRVSNRLLKRVRDFVQVQGDGVITG 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 E A AL R+ +D++G D++D + L I +F GGPVG+ETI+A + E +ED+ EPY Sbjct: 243 EAARDALDRIQVDRLGLDEVDHKLLKTIITHFRGGPVGLETIAATIGEEAHTVEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR+L P +QH G+++P Sbjct: 303 LMQIGFLQRTPRGRMLTPRCYQHFGVELP 331 >gi|254490163|ref|ZP_05103354.1| Holliday junction DNA helicase RuvB [Methylophaga thiooxidans DMS010] gi|224464649|gb|EEF80907.1| Holliday junction DNA helicase RuvB [Methylophaga thiooxydans DMS010] Length = 337 Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 179/308 (58%), Positives = 228/308 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+++ GQ +++F+ AA+ R+EALDH L GPPGLGKTTLA ++A E+GVN Sbjct: 21 IRPITLDDYIGQPVVREQMELFVSAARKRSEALDHTLIFGPPGLGKTTLANIIANEMGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ + GDLAALLTNLE DVLF+DEIHRLS +VEE+LYPAMED+Q+D+M+GEG Sbjct: 81 LKQTSGPVLERPGDLAALLTNLEPNDVLFVDEIHRLSPVVEEVLYPAMEDYQIDIMIGEG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY DL TIVQR A + + Sbjct: 141 PAARSIKLDLEPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYNTADLSTIVQRSAGILNV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA RSRGTPRIA RLLRRVRD+AEV ++ EIA AL L +D GFD Sbjct: 201 KLEQGGANEIARRSRGTPRIANRLLRRVRDYAEVKFDGEVSAEIARQALDLLDVDNYGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD + L I F GGPVG++ ++A + E R IED+IEP++IQ+GFI RTPRGR+ Sbjct: 261 MLDRKLLLSIIEKFEGGPVGLDNLAAAIGEERGTIEDVIEPFLIQEGFIMRTPRGRVATK 320 Query: 322 IAWQHLGI 329 AW HLG+ Sbjct: 321 RAWIHLGL 328 >gi|167041791|gb|ABZ06533.1| putative Holliday junction DNA helicase ruvB C-terminal domain [uncultured marine microorganism HF4000_093M11] Length = 354 Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 179/313 (57%), Positives = 233/313 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L ++ GQ E NL V+I AAK R ALDHVL GPPGLGKTTLA + +RE+ V Sbjct: 36 LRPERLRDYIGQKEIKENLVVYIGAAKKRGHALDHVLLSGPPGLGKTTLANIFSREMEVP 95 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPVI + GDLAA+LTNLE + FIDEIHRL+ +VEE+LY AMEDF LD+++GEG Sbjct: 96 LRATSGPVIERQGDLAAILTNLEPGTIFFIDEIHRLNRVVEEVLYGAMEDFTLDIIIGEG 155 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+VKI+L FTL+ ATTR GLLT+PL++RFGI RLNFY+ E+LKTI+ R A L G+ Sbjct: 156 PGARTVKIDLPHFTLVGATTRAGLLTSPLRERFGIQFRLNFYDPEELKTIILRAASLLGI 215 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +EA+ E+A R+RGTPRIA RLL+R RDFA++ + IT + +L ++ ID G D Sbjct: 216 EIVEEASLELARRARGTPRIANRLLKRCRDFADMETSGVITLPLVVRSLEKMRIDLEGLD 275 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D L I FGGGPVG+ T++A +SE +D IED+ EP+++ +GF+QRTPRGR+ Sbjct: 276 QMDRLILEAIIEKFGGGPVGLSTLAASVSEEKDTIEDVYEPFLLVKGFLQRTPRGRMATE 335 Query: 322 IAWQHLGIDIPHR 334 A+QHLGI IPH+ Sbjct: 336 RAYQHLGISIPHK 348 >gi|312110087|ref|YP_003988403.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y4.1MC1] gi|311215188|gb|ADP73792.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y4.1MC1] Length = 334 Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 184/329 (55%), Positives = 242/329 (73%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E L+S +V +ED + LRP+ L E+ GQ + NLKVFIEAAK R E LDHVL GPP Sbjct: 3 ERLVSGDVHREDISLEYSLRPKFLHEYIGQDKVKDNLKVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GV+ R+TSGP I + GDLAA+LT+LE DVLFIDEIHRL VEE Sbjct: 63 GLGKTTLAGIIANEMGVHLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLHRSVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMED+ LD+++G+G +ARS++I+L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDYCLDIVIGKGQTARSIRIDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 + E L IV R A++ + + EAA EIA RSRGTPRIA RLLRRVRDFA+V TIT Sbjct: 183 QPEHLTQIVMRTAEILHVDIKAEAALEIARRSRGTPRIANRLLRRVRDFAQVRGDGTITF 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +A AL L +D++G D +D + + I F GGPVGI+TI+A + E IED+ EPY Sbjct: 243 SLAKEALELLQVDRLGLDHIDHKLIEAIIEKFNGGPVGIDTIAATIGEEAQTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P A++H+G+++P Sbjct: 303 LLQIGFLQRTPRGRMVTPAAYKHVGMEVP 331 >gi|78357365|ref|YP_388814.1| Holliday junction DNA helicase RuvB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|97190034|sp|Q30YX7|RUVB_DESDG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|78219770|gb|ABB39119.1| Holliday junction DNA helicase subunit RuvB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 321 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 173/318 (54%), Positives = 244/318 (76%), Gaps = 1/318 (0%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 + QE D S+ RPRTL++F GQ + +NL+V+++AA+ R +A+DH LF G PGLGKTTLA Sbjct: 3 MEQECVDDSI-RPRTLDDFIGQEDLRANLRVYLQAARGRGQAMDHTLFYGNPGLGKTTLA 61 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 Q++A E+GVN TSGPV+ ++GDLAA+LTNL D+LF+DEIHR+ + VEE+LYPAMED Sbjct: 62 QIMASEMGVNMVCTSGPVLERSGDLAAILTNLGKGDLLFVDEIHRMPVAVEEVLYPAMED 121 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F+LDL++G+GP AR+VKI+L FTL+ ATTR+GLL++PL+DRFGI RL FY +L I Sbjct: 122 FKLDLVIGQGPGARTVKIDLEPFTLVGATTRIGLLSSPLRDRFGIISRLEFYTPAELACI 181 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V+R A + G+++T++ A EI RSRGTPRIA RLLRRVRDFA V ++ +T +A AL Sbjct: 182 VKRTAGIMGVSLTEDGAVEIGRRSRGTPRIANRLLRRVRDFASVQNSAAVTAALASDALA 241 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 R+ +D++G DQ+D + L+++ +F GGPVG++T++ SE IED+ EPY+IQ GF++ Sbjct: 242 RMDVDELGLDQMDRKLLSVLIEHFAGGPVGVKTLAVACSEEVRTIEDIYEPYLIQCGFLK 301 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTPRGR+ A++H+ + Sbjct: 302 RTPRGRMATAKAYRHMNL 319 >gi|295399353|ref|ZP_06809335.1| Holliday junction DNA helicase RuvB [Geobacillus thermoglucosidasius C56-YS93] gi|294978819|gb|EFG54415.1| Holliday junction DNA helicase RuvB [Geobacillus thermoglucosidasius C56-YS93] Length = 334 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 184/329 (55%), Positives = 242/329 (73%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E L+S +V +ED + LRP+ L E+ GQ + NLKVFIEAAK R E LDHVL GPP Sbjct: 3 ERLVSGDVHREDISLEYSLRPKFLHEYIGQDKVKDNLKVFIEAAKMREETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E+GV+ R+TSGP I + GDLAA+LT+LE DVLFIDEIHRL VEE Sbjct: 63 GLGKTTLAGIIANEMGVHLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLHRSVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMED+ LD+++G+G +ARS++I+L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDYCLDIVIGKGQTARSIRIDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 + E L IV R A++ + + EAA EIA RSRGTPRIA RLLRRVRDFA+V TIT Sbjct: 183 QPEHLTQIVMRTAEILHVDIKAEAALEIARRSRGTPRIANRLLRRVRDFAQVRGDGTITF 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +A AL L +D++G D +D + + I F GGPVGI+TI+A + E IED+ EPY Sbjct: 243 SLAKEALELLQVDRLGLDHIDHKLIEAIIEKFNGGPVGIDTIAATIGEEAQTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++Q GF+QRTPRGR++ P A++H+G+++P Sbjct: 303 LLQIGFLQRTPRGRIVTPAAYKHVGMEVP 331 >gi|258512077|ref|YP_003185511.1| Holliday junction DNA helicase RuvB [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478803|gb|ACV59122.1| Holliday junction DNA helicase RuvB [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 332 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 181/328 (55%), Positives = 243/328 (74%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E L+S +EDA + +RPR L+++ GQ A NL++FI+AAK R E LDHVL GPPG Sbjct: 3 ERLISAEWMREDAQLDTIRPRFLDDYIGQRAAVENLRIFIQAAKERGEPLDHVLLYGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKT+LA ++A ELGV R TSGP I +AGDLAA+LTNL+ DVLFIDEIHRLS VEE+ Sbjct: 63 LGKTSLAMIIANELGVQIRVTSGPAIERAGDLAAILTNLQPGDVLFIDEIHRLSPSVEEV 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF +D+++G+GPSARSV+++L FTLI ATTR GLL++PL+DRFG+ + L++Y Sbjct: 123 LYPAMEDFAIDIVIGKGPSARSVRLDLPPFTLIGATTRAGLLSHPLRDRFGVMLHLDYYP 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 + DL IV+R A++ L++T++ EIA R+RGTPRIA RLL+RVRD A+VA I Sbjct: 183 VRDLAEIVKRNARILQLSITEDGCAEIARRARGTPRIANRLLKRVRDIAQVAGWPEIDAA 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 A AL +L +D +G D D R L FGGGPVG++T++A + E +ED+ EPY+ Sbjct: 243 RAAEALAQLHVDPLGLDATDKRILEAAMDKFGGGPVGLDTLAAAVGEEPSTLEDVYEPYL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +Q GF++RTPRGR++MP A++HLG +P Sbjct: 303 LQIGFLKRTPRGRVVMPSAYRHLGRAVP 330 >gi|189485461|ref|YP_001956402.1| Holliday junction resolvasome helicase subunit RuvB [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287420|dbj|BAG13941.1| Holliday junction resolvasome helicase subunit RuvB [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 340 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 179/321 (55%), Positives = 238/321 (74%), Gaps = 1/321 (0%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 +++E+ + LRP+ L++F GQ + +NLK+FIEAAK R EALDH LF P GLGKTTL+ Sbjct: 13 LTEENRIENSLRPQILDDFIGQDKLKNNLKIFIEAAKKRHEALDHCLFYAPHGLGKTTLS 72 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A+E+G N R TSGPV+ + GDLAA+LTNL D DV FIDEIHR++ VEE LYP MED Sbjct: 73 HIIAKEMGCNLRITSGPVLERVGDLAAILTNLSDGDVFFIDEIHRMNHFVEESLYPVMED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F+LD+++G+GPSAR++K+ + RFTLI ATTR GLL++PL+DRFGI L+FY I++L+ I Sbjct: 133 FELDIIIGQGPSARTIKLPVPRFTLIGATTRAGLLSSPLRDRFGIIEHLDFYAIKELEHI 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V R A + + V ++A EIA RSRGTPRI RLL+RVRDFAEV K IT IA AL Sbjct: 193 VNRSAAIMNIGVDEDAGKEIARRSRGTPRIVNRLLKRVRDFAEVRGGK-ITHAIAKGALN 251 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L +D G D++D LT++ FGGGPVGI+TI+ ++E D I D+ EPY+IQ GF+ Sbjct: 252 ALEVDSAGLDKIDRLILTVLIEKFGGGPVGIDTIATAVAEESDTITDVYEPYLIQSGFVA 311 Query: 312 RTPRGRLLMPIAWQHLGIDIP 332 RTPRGR++ ++H+GID P Sbjct: 312 RTPRGRVVTSDGYKHIGIDPP 332 >gi|134299519|ref|YP_001113015.1| Holliday junction DNA helicase RuvB [Desulfotomaculum reducens MI-1] gi|172044285|sp|A4J537|RUVB_DESRM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|134052219|gb|ABO50190.1| Holliday junction DNA helicase subunit RuvB [Desulfotomaculum reducens MI-1] Length = 344 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 183/330 (55%), Positives = 236/330 (71%), Gaps = 3/330 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR L+S ED D+ L LRPR L E+ GQ +A + +F+EAA+ R E LDHVL Sbjct: 1 MSDR--LISATAQSEDNDLELSLRPRRLSEYIGQQKAKETISIFVEAARQRGEPLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A E+ VN R+TSGP I + GDLAA+LTNL DVLFIDEIHRLS Sbjct: 59 FGPPGLGKTTLSNIIANEMAVNIRTTSGPAIERQGDLAAILTNLAPGDVLFIDEIHRLSK 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEILYPAMEDF LD+++G+GP ARS++++L +FTLI ATTR G+L +PL+DRFGI R Sbjct: 119 AVEEILYPAMEDFALDIVLGKGPGARSIRLDLPKFTLIGATTRAGMLASPLRDRFGIISR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY EDL IV R A + + + A EIA RSRGTPR+A RLL+RVRD+A+V Sbjct: 179 LEFYNNEDLTRIVTRAADILKVVIDRSGAEEIARRSRGTPRVANRLLKRVRDYAQVRAQG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT ++A AL +D +G D D R L+ I F GGPVG++TI+A +SE D +ED+ Sbjct: 239 DITADVAAEALEFFEVDPLGLDHTDRRLLSSIIEKFNGGPVGLDTIAAAISEETDTVEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 +EP+++Q G I RTPRGR++ P A++HLGI Sbjct: 299 LEPFLMQMGLITRTPRGRVVTPQAYKHLGI 328 >gi|229918407|ref|YP_002887053.1| Holliday junction DNA helicase RuvB [Exiguobacterium sp. AT1b] gi|259495666|sp|C4L523|RUVB_EXISA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|229469836|gb|ACQ71608.1| Holliday junction DNA helicase RuvB [Exiguobacterium sp. AT1b] Length = 333 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 183/327 (55%), Positives = 241/327 (73%), Gaps = 1/327 (0%) Query: 5 EGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LLS++ Q ED++ LRP+ E++ GQ +A NL VFI+AAK R+E LDHVL GPP Sbjct: 3 ERLLSQSHQQYEDSEEWSLRPQRFEQYIGQEKAKGNLSVFIQAAKLRSETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLAQ++A E+GV ++T+GP I + GDLAA+L+ LE DVLFIDEIHRLS +EE Sbjct: 63 GLGKTTLAQIIANEMGVGIKTTAGPAIERPGDLAAILSTLEPGDVLFIDEIHRLSRTIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 ILYPAMED+ LD++ G+G ARSV+I+L FTL+ ATTR G+L+ PL+DRFG+ ++L +Y Sbjct: 123 ILYPAMEDYCLDIVYGQGEMARSVRIDLPPFTLVGATTRAGMLSAPLRDRFGVTLKLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E +L IV R A+L L+++ EA+ IA RSRGTPRIA RLLRRVRDFA+VA K I Sbjct: 183 ETHELAAIVSRTAQLFRLSISPEASGAIAKRSRGTPRIANRLLRRVRDFAQVAGTKEIDP 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +A AL RL +D +G D++D R L + FGGGPVG+ET++A + E IED+ EPY Sbjct: 243 VLASDALDRLHVDALGLDEVDHRLLRAMVERFGGGPVGLETLAATIGEDAQTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330 ++QQGF+QRTPRGR++ A H G + Sbjct: 303 LLQQGFLQRTPRGRMITQFAKSHFGYE 329 >gi|212638556|ref|YP_002315076.1| Holliday junction resolvasome, helicase subunit RuvB [Anoxybacillus flavithermus WK1] gi|212560036|gb|ACJ33091.1| Holliday junction resolvasome, helicase subunit RuvB [Anoxybacillus flavithermus WK1] Length = 335 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 184/330 (55%), Positives = 239/330 (72%), Gaps = 1/330 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M E L+S +DA + LRP+ L E+ GQ + NL VFIEAAK R E LDHVL Sbjct: 1 MMEERLISSAADYDDASLEYSLRPKQLREYIGQQKVKENLTVFIEAAKMRGETLDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+GV R+T+GP I + GDLAA+LT LE DVLFIDEIHRL Sbjct: 61 GPPGLGKTTLAAIIANEMGVQLRTTAGPAIERPGDLAAILTTLEPGDVLFIDEIHRLPRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD+++G+GP+ARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL Sbjct: 121 VEEVLYPAMEDFCLDIVIGKGPAARSVRLDLPPFTLVGATTRSGALSAPLRDRFGVLSRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y E+L IV+R A + + + +EAA EIA RSRGTPRIA RLLRRVRDFA+V T Sbjct: 181 EYYTSEELAHIVKRTAHIFAVQIEEEAAFEIARRSRGTPRIANRLLRRVRDFAQVRGDGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT +A+ AL +L +D++G D LD + L + F GGPVG+ETI+A + E IED+ Sbjct: 241 ITFLLANEALEQLQVDRLGLDHLDHKLLKSMMEKFRGGPVGLETIAATIGEEAQTIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY++Q GF+QRTPRGR++ P+A+ H G++ Sbjct: 301 EPYLLQIGFLQRTPRGRIVTPLAYHHFGME 330 >gi|99035954|ref|ZP_01314999.1| hypothetical protein Wendoof_01000160 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 326 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 179/308 (58%), Positives = 236/308 (76%), Gaps = 2/308 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L++F GQ + NLKVFI AA+ R EALDHVL GPPGLGKTTLAQ+V++EL V+ Sbjct: 19 IRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIVSKELRVS 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR+TSGP+++KAGDLAA+LT L +DVLFIDEIHRL+ +EE+LY AMEDF LD++VGEG Sbjct: 79 FRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDILVGEG 138 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PS R+++I+L FTLI ATT++GLL+ PL+DRFGIP+ L FY E+L I++RGA++ Sbjct: 139 PSTRTLRIDLPPFTLIGATTQLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKRGARVLSA 198 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA EIA R+RGTPRIA RLLRR+RDF EV K IT E+AD+ LL+L +DKMG + Sbjct: 199 EIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLGVDKMGLN 258 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD+ YL + GPVGI+TIS LSE IE+ +EPY+I+ F++RTPRGR+L Sbjct: 259 KLDMNYLRFLFNT--SGPVGIDTISIALSEDVGNIEETVEPYLIKISFVKRTPRGRVLTD 316 Query: 322 IAWQHLGI 329 A ++L Sbjct: 317 QAKEYLSF 324 >gi|85858587|ref|YP_460789.1| Holliday junction DNA helicase RuvB [Syntrophus aciditrophicus SB] gi|97190384|sp|Q2LRA8|RUVB_SYNAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|85721678|gb|ABC76621.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB] Length = 340 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 177/328 (53%), Positives = 237/328 (72%), Gaps = 1/328 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M R+ L+S D + LRP +++E+ GQ + L +F+EAA+ R EALDHVL Sbjct: 1 MKRDDLVSPECMDGDNVYETTLRPHSIKEYVGQKKIKKTLPIFVEAAQKRKEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARE+G N + TSGPVI + GDLAA+LTNL+D D+LFIDEIHRL Sbjct: 61 GPPGLGKTTLALIIAREMGFNIKVTSGPVIERPGDLAAILTNLKDYDILFIDEIHRLPHS 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMEDF +D+++G+GPSARS+K+++ +FTL+ ATTR GLLT+PL+DRFGI RL Sbjct: 121 VEEILYPAMEDFYIDIVIGQGPSARSMKLDIPKFTLVGATTRAGLLTSPLRDRFGISFRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 ++Y +E+L I+ R A + + + A EIA RSRGTPRIA RLL+RVRD+A+V Sbjct: 181 DYYAVEELTKIINRSASIMSIEIEHSGALEIAKRSRGTPRIANRLLKRVRDYAQVKGEGI 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R +A AL L ID GFDQ+D L I N+GGGPVGI+T+ A + E + IED+ Sbjct: 241 IKRAVAVHALEMLEIDDRGFDQMDRSILLSIIENYGGGPVGIDTLCATVGEEKTTIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EPY+I++G++Q+T RGR+ A++H G Sbjct: 301 EPYLIKEGYLQKTARGRIATKKAYEHFG 328 >gi|167629899|ref|YP_001680398.1| holliday junction DNA helicase ruvb [Heliobacterium modesticaldum Ice1] gi|238687888|sp|B0TF70|RUVB_HELMI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|167592639|gb|ABZ84387.1| holliday junction DNA helicase ruvb [Heliobacterium modesticaldum Ice1] Length = 370 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 179/311 (57%), Positives = 231/311 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL E+ GQ + NL VFI+AA R E LDHVL GPPGLGKTTLAQ++A+ELGV Sbjct: 21 LRPRTLREYIGQDKLKENLTVFIQAALGRREPLDHVLLYGPPGLGKTTLAQIIAQELGVQ 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I + GDLAA+LTNL+ DVLFIDEIHRL+ VEE+LYPAMEDF LD+++G+G Sbjct: 81 LRVTSGPAIERPGDLAAILTNLQPMDVLFIDEIHRLNRAVEEVLYPAMEDFCLDIVIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS++I+L RFTL+ ATTR G+LT+PL+DRFG+ RL +Y ++L+ I+ R A + G+ Sbjct: 141 PAARSIRIDLPRFTLVGATTRAGMLTSPLRDRFGVIHRLEYYRPDELEFIILRAATILGV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 E A EIA+RSRGTPRIA RLL+RVRD+A+V +T E+A AL RL +D G D Sbjct: 201 TAEPEGAREIALRSRGTPRIANRLLKRVRDYAQVLSDGVVTGEVAREALRRLEVDPRGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L + R F GGPVG+ET++A + E D +ED++EPY++Q GF+ RTPRGR+ Sbjct: 261 TTDQRLLEALIRKFAGGPVGVETLAASVGESVDTVEDVVEPYLMQLGFLNRTPRGRMATI 320 Query: 322 IAWQHLGIDIP 332 A HLG+ +P Sbjct: 321 AACAHLGVPVP 331 >gi|147677362|ref|YP_001211577.1| Holliday junction DNA helicase RuvB [Pelotomaculum thermopropionicum SI] gi|189046040|sp|A5D3G1|RUVB_PELTS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|146273459|dbj|BAF59208.1| holliday junction resolvasome, helicase subunit [Pelotomaculum thermopropionicum SI] Length = 341 Score = 366 bits (939), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 183/331 (55%), Positives = 242/331 (73%), Gaps = 3/331 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR L+S EDAD+ + LRPR L E+ GQ + + VFI+AA+ R E LDHVL Sbjct: 1 MKDR--LISAVARPEDADVDTSLRPRLLAEYIGQEKVKETISVFIQAARGRGEPLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GV+ R+TSGP + + GDLAA+LT+L D+LFIDEIHRLS Sbjct: 59 FGPPGLGKTTLANIIANEMGVSIRTTSGPAVERPGDLAAILTSLSQGDILFIDEIHRLSR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMED+ LD+++G+GP ARS+++ L RFTL+ ATTR GLLT+PL+DRFG+ R Sbjct: 119 TVEEVLYPAMEDYALDIVIGKGPGARSLRLELPRFTLVGATTRAGLLTSPLRDRFGVISR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y EDL IV R A++ G+ +T E A EIA RSRGTPR+A RLL+RVRD+A+V Sbjct: 179 LEYYRPEDLVLIVNRSARILGIEITAEGAFEIARRSRGTPRVANRLLKRVRDYAQVRANG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT E+A AL L +D +G D D R L I + FGGGPVG+ETI+ ++E + +ED+ Sbjct: 239 VITCEVAVEALKFLEVDPLGLDFADRRLLLTIIQKFGGGPVGLETIATAVNEEPETVEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+IQ G + RTPRGR+ P+A++HLG++ Sbjct: 299 YEPYLIQLGMLARTPRGRVTTPLAFRHLGLE 329 >gi|291563158|emb|CBL41974.1| Holliday junction DNA helicase, RuvB subunit [butyrate-producing bacterium SS3/4] Length = 332 Score = 365 bits (938), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 177/325 (54%), Positives = 242/325 (74%), Gaps = 1/325 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ ++ED I LRP+ L+++ GQ + S LK+FI+AAK+R EALDHVLF GPPGL Sbjct: 5 IITTEETEEDKKIEGTLRPQYLKDYIGQEKIKSTLKIFIDAAKSRGEALDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLCGIIANEMGVNLKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF +D+M+G+ SARS++++L +FTL+ ATTRVGLLT PL+DRFG+ RL FY Sbjct: 125 YPAMEDFAIDIMLGKDSSARSIRLDLPKFTLVGATTRVGLLTAPLRDRFGVIQRLEFYTP 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+L IV+R AK+ G+ + +E A EIA RSRGTPR+A RLL+RVRDFA+V + ITR + Sbjct: 185 EELCVIVKRSAKVLGVEIDEEGAFEIARRSRGTPRLANRLLKRVRDFAQVKYDGVITRHV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AD AL L +DK+G D D L + + F GGPVG+ET++A + E +ED+ EPY++ Sbjct: 245 ADFALDILDVDKLGLDNNDRTLLLTLIQKFSGGPVGLETLAASIGEDSGTLEDVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330 G I RTPRGR+ +A++HLG+D Sbjct: 305 MNGLIMRTPRGRMATDLAYKHLGLD 329 >gi|163753882|ref|ZP_02161005.1| Holliday junction DNA helicase RuvB [Kordia algicida OT-1] gi|161326096|gb|EDP97422.1| Holliday junction DNA helicase RuvB [Kordia algicida OT-1] Length = 340 Score = 365 bits (938), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 187/329 (56%), Positives = 239/329 (72%), Gaps = 1/329 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M D ++N S E+ DI LRP + E+FTGQ + NL+VF++AA R EALDH LF Sbjct: 1 MNDNLDPTNQNYSPEENDIEKALRPLSFEDFTGQDQVLENLQVFVQAANLREEALDHTLF 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A EL V+ + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS Sbjct: 61 HGPPGLGKTTLAHILASELDVSIKVTSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 IVEE LY AMED+++D+M+ GP+AR+V+INL+ FTL+ ATTR GLLT P++ RFGI R Sbjct: 121 IVEEYLYSAMEDYKIDIMIESGPNARTVQINLNPFTLVGATTRSGLLTAPMRARFGIASR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y E L TIVQR A++ + ++ EAA EIA RSRGTPRIA LLRRVRDFA++ Sbjct: 181 LQYYSTELLSTIVQRSAQILNVPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI EIA L L +D G D++D R L+ I F GGPVGI T++ +SE + IE++ Sbjct: 241 TIDIEIARFGLKALNVDAYGLDEMDNRILSTIIDKFKGGPVGITTLATAVSESGETIEEV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EP++IQQGFI RTPRGR + +A++HLG Sbjct: 301 YEPFLIQQGFIIRTPRGREVTELAYKHLG 329 >gi|260587810|ref|ZP_05853723.1| holliday junction DNA helicase RuvB [Blautia hansenii DSM 20583] gi|260542075|gb|EEX22644.1| holliday junction DNA helicase RuvB [Blautia hansenii DSM 20583] Length = 329 Score = 365 bits (938), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 173/308 (56%), Positives = 233/308 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ +A NLKV+IEAAK R +ALDHVLF GPPGLGKTTLA ++A ELGV+ Sbjct: 21 LRPQLLNDYIGQEKAKKNLKVYIEAAKQRGDALDHVLFYGPPGLGKTTLAGIIANELGVH 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+LYPAMED+ +D+M+G+G Sbjct: 81 MKVTSGPAIEKPGEMAAILNNLQENDVLFVDEIHRLNRQVEEVLYPAMEDYAIDIMIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +ARS++++L +FTL+ ATTR GLLT PL+DRFG+ L FY E+L+TI+ R AK+ G+ Sbjct: 141 ATARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVHHLEFYTEEELQTIIIRSAKVLGV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A E+A RSRGTPR+A RLL+RVRDFA+V + IT+E+AD A+ L +D+ G D Sbjct: 201 EIDEAGALEMAKRSRGTPRLANRLLKRVRDFAQVKYDGKITKEVADFAMDLLEVDRYGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q D LT I F GGPVG++T+SA + E IED+ EPY+I+ GF+ RTPRGR + Sbjct: 261 QTDRLLLTTIIERFSGGPVGLDTLSAAIGEDAGTIEDVYEPYLIKNGFLLRTPRGRTVTE 320 Query: 322 IAWQHLGI 329 + + HLGI Sbjct: 321 LTYHHLGI 328 >gi|197301662|ref|ZP_03166732.1| hypothetical protein RUMLAC_00388 [Ruminococcus lactaris ATCC 29176] gi|197299102|gb|EDY33632.1| hypothetical protein RUMLAC_00388 [Ruminococcus lactaris ATCC 29176] Length = 332 Score = 365 bits (938), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 175/321 (54%), Positives = 237/321 (73%), Gaps = 1/321 (0%) Query: 14 QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED I LRP+ L E+ GQ +A L ++IEAAKAR EALDHVLF GPPGLGKTTLA Sbjct: 12 EEDIKIEGQLRPQHLTEYIGQEKAKKTLGIYIEAAKARGEALDHVLFYGPPGLGKTTLAG 71 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+GVN + TSGP I K G++AA+L L++ DVLF+DEIHRL+ VEE+LYPAMED+ Sbjct: 72 IIANEMGVNLKVTSGPAIEKPGEMAAILNGLQENDVLFVDEIHRLNRQVEEVLYPAMEDY 131 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+M+G+GP ARSV++NL +FTL+ ATTR G+LT PL+DRFG+ RL FY +L TI+ Sbjct: 132 AIDIMIGKGPGARSVRLNLPKFTLVGATTRAGMLTAPLRDRFGVVNRLEFYTDRELMTII 191 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A++ G+ + + A E+A RSRGTPR+A RLL+RVRDFA+V + IT ++A+ AL Sbjct: 192 LRSARVLGVEIEESGAMELARRSRGTPRLANRLLKRVRDFAQVKYDGVITEKVANYALDL 251 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +DK G D +D L + F GGPVG++T++A +SE +ED+ EPY+++ GFIQR Sbjct: 252 LDVDKYGLDHIDRSILLTMIEKFQGGPVGLDTLAASISEDAGTLEDVYEPYLLKNGFIQR 311 Query: 313 TPRGRLLMPIAWQHLGIDIPH 333 TPRGR++ +A+ HLGI P Sbjct: 312 TPRGRVVTALAYSHLGIPQPQ 332 >gi|119504259|ref|ZP_01626339.1| Isoleucyl-tRNA synthetase, class Ia [marine gamma proteobacterium HTCC2080] gi|119459767|gb|EAW40862.1| Isoleucyl-tRNA synthetase, class Ia [marine gamma proteobacterium HTCC2080] Length = 351 Score = 365 bits (938), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 183/311 (58%), Positives = 236/311 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ LE++ GQ +++F+ AAK R E LDH L GPPGLGKTTLA ++A E+GV Sbjct: 25 IRPKCLEDYLGQRVVREQMEIFLAAAKQRDEPLDHTLIFGPPGLGKTTLASIIAHEMGVA 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGPV+ KAGD+AAL+TNLE DVLFIDEIHRLS VEEILYPAMED+QLD+M+GEG Sbjct: 85 LKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLSPYVEEILYPAMEDYQLDIMIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FYE++DL IV R AKL + Sbjct: 145 PAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYEVDDLTKIVARSAKLLEI 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V D A E+A R+RGTPRIA RLLRRVRD+AEV IT +A AL L +D++G D Sbjct: 205 PVDDAGAREMARRARGTPRIANRLLRRVRDYAEVKSDGRITERVAQQALDMLNVDQLGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R L M+ F GGPVG+++++A LSE R +ED++EPY+IQQG++ RTPRGR++ Sbjct: 265 HLDRRLLLMLIEKFEGGPVGVDSLAAALSEERGTLEDVLEPYLIQQGYLLRTPRGRIVTQ 324 Query: 322 IAWQHLGIDIP 332 A++H GI +P Sbjct: 325 AAYRHFGIQMP 335 >gi|323204055|gb|EFZ89070.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 338 Score = 365 bits (937), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 182/310 (58%), Positives = 235/310 (75%), Gaps = 1/310 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ EIA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 Query: 300 IEPYMIQQGF 309 +EPY+IQQGF Sbjct: 301 LEPYLIQQGF 310 >gi|297569178|ref|YP_003690522.1| Holliday junction DNA helicase RuvB [Desulfurivibrio alkaliphilus AHT2] gi|296925093|gb|ADH85903.1| Holliday junction DNA helicase RuvB [Desulfurivibrio alkaliphilus AHT2] Length = 363 Score = 365 bits (937), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 180/307 (58%), Positives = 232/307 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ + NL++ I AAK R EALDH LF G PGLGKTTLA V+A E+G Sbjct: 22 LRPKLLNQYIGQEQVKENLEIAIAAAKGRGEALDHTLFHGFPGLGKTTLAYVIANEMGAG 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPVI +AGDLAA+LT+L++ DVLFIDEIHRL+ +VEEILYPAMEDF+LDL++G+G Sbjct: 82 IRVTSGPVIERAGDLAAILTSLQEGDVLFIDEIHRLNHVVEEILYPAMEDFELDLVIGQG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARSVK++L RFTL+ ATTR GLLT PL+DRFG+ +RL+FY E+L IV+R A+L G+ Sbjct: 142 PGARSVKMSLPRFTLVGATTRTGLLTPPLRDRFGLSLRLDFYAPEELVAIVKRSAELLGV 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EI RSRGTPRIA RLLRR+RDFAEV IT EIADAAL L +D +GFD Sbjct: 202 PIDQAGALEIGRRSRGTPRIANRLLRRLRDFAEVKGRGKITAEIADAALSMLGVDLLGFD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L + F GGP+G+ET++ + E ++ +ED+ EP++IQ GF+ RTPRGR+ Sbjct: 262 EMDRRILLALIDRFQGGPIGLETLATMVCEEKNTLEDVYEPFLIQAGFLVRTPRGRMATR 321 Query: 322 IAWQHLG 328 A++H G Sbjct: 322 AAYEHFG 328 >gi|166031913|ref|ZP_02234742.1| hypothetical protein DORFOR_01614 [Dorea formicigenerans ATCC 27755] gi|166028366|gb|EDR47123.1| hypothetical protein DORFOR_01614 [Dorea formicigenerans ATCC 27755] Length = 335 Score = 365 bits (937), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 180/329 (54%), Positives = 243/329 (73%), Gaps = 2/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M R + + N+ +ED I S LRP+ L+++ GQ +A LKV+I AAK R E LDHVLF Sbjct: 1 MSRRIITTENL-EEDVKIESHLRPQLLDDYIGQEKAKEILKVYITAAKERGETLDHVLFY 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ Sbjct: 60 GPPGLGKTTLAGIIANEMHVNIKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQ 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMED+ +D+M+G+G SARS++++L +FTL+ ATTRVG+LT PL+DRFG+ RL Sbjct: 120 VEEVLYPAMEDYAIDIMIGKGASARSIRLDLPKFTLVGATTRVGMLTAPLRDRFGVIHRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +E+LK I+ R AK+ + + D A +A RSRGTPR+A RLL+RVRDFA+V + Sbjct: 180 EFYTVEELKRIIARSAKVLDVGIDDAGATALARRSRGTPRLANRLLKRVRDFAQVKYDGY 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT ++A+ AL L +DK G DQ D L I F GGPVG++T++A LSE IED+ Sbjct: 240 ITEDVANYALDLLDVDKCGLDQTDRNLLMTIIERFDGGPVGLDTLAASLSEDSGTIEDVY 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY+++ GFIQRTPRGR++ +A+ HLGI Sbjct: 300 EPYLLKNGFIQRTPRGRIVTDLAYAHLGI 328 >gi|317128203|ref|YP_004094485.1| Holliday junction DNA helicase RuvB [Bacillus cellulosilyticus DSM 2522] gi|315473151|gb|ADU29754.1| Holliday junction DNA helicase RuvB [Bacillus cellulosilyticus DSM 2522] Length = 334 Score = 365 bits (937), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 181/334 (54%), Positives = 239/334 (71%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MMD + + QED + LRP+TL ++ GQ +NL VFIEAAK R E LDHVL Sbjct: 1 MMDDRLVSGESNQQEDWEEHSLRPQTLTQYIGQENVKNNLNVFIEAAKMREETLDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ ++A E+ V R+TSGP I + GDLAA+LT LE DVLFIDEIHRL+ Sbjct: 61 GPPGLGKTTLSMIIANEMNVQLRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRS 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G+L+ PL+DRFG+ RL Sbjct: 121 VEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLSAPLRDRFGVVSRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y E+L IV+R A + + + EAA EIA RSRGTPRIA RLLRRVRDFA+V T Sbjct: 181 QYYTHEELTEIVERTALVMNVEIDHEAAIEIARRSRGTPRIANRLLRRVRDFAQVKGDNT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I ++ AL L +DK+G D++D + L I F GGPVG++TI+A + E IED+ Sbjct: 241 IKLDVTQHALQLLQVDKLGLDEIDHKLLRNIVEKFRGGPVGLDTIAATIGEESHTIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY++Q GF+QRTPRGR++ ++HL +++P + Sbjct: 301 EPYLLQIGFLQRTPRGRMVTDDVYKHLQMEVPRK 334 >gi|163814139|ref|ZP_02205531.1| hypothetical protein COPEUT_00293 [Coprococcus eutactus ATCC 27759] gi|158450588|gb|EDP27583.1| hypothetical protein COPEUT_00293 [Coprococcus eutactus ATCC 27759] Length = 333 Score = 365 bits (937), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 172/309 (55%), Positives = 229/309 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + NL++FIEAAK R E LDH+L GPPGLGKTTL+ +VA E+GVN Sbjct: 21 LRPQYLNEYIGQEKVKDNLRIFIEAAKKRKEPLDHLLLYGPPGLGKTTLSTIVANEMGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K G+LAA+L NL D D+LFIDEIHRLS VEE+LYPAMED+ +D+++G+G Sbjct: 81 IKITSGPAIEKPGELAAILNNLSDNDILFIDEIHRLSTQVEEVLYPAMEDYAIDVVIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ARS++++L +FTLI ATTRVG+L+ PL+DRFG+ +L FY EDLK I+ R A + G+ Sbjct: 141 AGARSIRLDLPKFTLIGATTRVGMLSAPLRDRFGMVDKLEFYSNEDLKEIIVRSADVLGV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ DE A EIA RSRGTPR+A RLL+R RD+AEV H I+R++A +AL +L +D MG D Sbjct: 201 SLDDEGALEIARRSRGTPRLANRLLKRCRDYAEVCHDGCISRDVAKSALDKLQVDSMGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D L + F GGPVG++T++A + E IED+ EPY I GFI RTPRGR++ Sbjct: 261 VNDRNILLTMIEKFDGGPVGLDTLAAAVGEDPGTIEDVYEPYFIMNGFINRTPRGRVVTE 320 Query: 322 IAWQHLGID 330 + ++HLG+D Sbjct: 321 LCYRHLGLD 329 >gi|309791416|ref|ZP_07685923.1| Holliday junction DNA helicase B [Oscillochloris trichoides DG6] gi|308226549|gb|EFO80270.1| Holliday junction DNA helicase B [Oscillochloris trichoides DG6] Length = 343 Score = 365 bits (937), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 186/333 (55%), Positives = 242/333 (72%), Gaps = 1/333 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M E LL+ + +D + LRPR L EF GQ + LK+ I AAKARAE LDH LF Sbjct: 1 MAEERLLNPSADSDDQQVEKSLRPRNLAEFIGQEKTVDQLKIAITAAKARAEPLDHTLFY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT+LA V+A+E+GV + TSGP I +AGDLAA+LTNL+ DVLFIDE+HRL+ Sbjct: 61 GPPGLGKTSLAGVIAQEMGVKIKITSGPAIERAGDLAAVLTNLQKDDVLFIDEVHRLNRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LDLMVG+GPSARS+++NL RFT++ ATTR+ LLT+PL+DRF RL Sbjct: 121 VEEVLYPAMEDFALDLMVGKGPSARSLRLNLPRFTVVGATTRLALLTSPLRDRFVSVHRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E + IV R A++ G+ +++E A EI R+RGTPRIA RLLRRVRD+A+V Sbjct: 181 IFYSDEAMCEIVTRSARILGMPISNEGALEIGRRARGTPRIANRLLRRVRDYAQVIGDGV 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +A AAL +L +D +G D+ D R L I F GGPVG+ T++A L+E DA+ED+ Sbjct: 241 IDVPVARAALAQLEVDDLGLDENDRRLLHAIIELFNGGPVGLSTLAAALAEEVDAVEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EP+++Q GF+QRTPRGR+ A++HLGI +P+ Sbjct: 301 EPFLLQLGFLQRTPRGRIATRRAYEHLGIPVPN 333 >gi|190571379|ref|YP_001975737.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018778|ref|ZP_03334586.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238058358|sp|B3CMH5|RUVB_WOLPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|190357651|emb|CAQ55095.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995729|gb|EEB56369.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 329 Score = 365 bits (936), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 182/309 (58%), Positives = 236/309 (76%), Gaps = 2/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L++F GQ + NLKVFI AA+ RAEALDHVL GPPGLGKTTLAQ+V++EL V+ Sbjct: 19 IRPEQLDDFVGQKDLIQNLKVFINAAQTRAEALDHVLLYGPPGLGKTTLAQIVSKELRVS 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR+TSGP+++KAGDLAA+LT L +DVLFIDEIHRL+ +EE+LY AMEDF LD++VGEG Sbjct: 79 FRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDILVGEG 138 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PS R+++I+L FTLI ATTR+GLL+ PL+DRFGIP+ L FY E+L I++RGA++ Sbjct: 139 PSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVDIIKRGARVLCA 198 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +A EIA R+RGTPRIA RLLRR+RDF EV K IT EIA +AL +L IDKMG + Sbjct: 199 EIEKDAVQEIACRARGTPRIALRLLRRIRDFVEVKDDKKITCEIAGSALSKLGIDKMGLN 258 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD+ YL + GPVGI+TIS LSE IE+ +EPY+I+ F++RTPRGR+L Sbjct: 259 KLDMDYLRFLFNT--SGPVGIDTISIALSEDVGNIEETVEPYLIKVSFVKRTPRGRVLTD 316 Query: 322 IAWQHLGID 330 A ++L I+ Sbjct: 317 QAREYLSIN 325 >gi|320352804|ref|YP_004194143.1| Holliday junction DNA helicase RuvB [Desulfobulbus propionicus DSM 2032] gi|320121306|gb|ADW16852.1| Holliday junction DNA helicase RuvB [Desulfobulbus propionicus DSM 2032] Length = 355 Score = 365 bits (936), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 176/306 (57%), Positives = 231/306 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR LEE+ GQ + +L+VFI+AA R E LDHVLF G PGLGKTTLA ++A E+G Sbjct: 28 IRPRRLEEYIGQDQVKQSLRVFIQAALQRGEPLDHVLFHGFPGLGKTTLAYIIANEMGAG 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI + GDLAA+LT+L+ DVLFIDEIHRL+ +VEEILYPAMEDFQLDL++G+G Sbjct: 88 IKVTSGPVIERPGDLAAILTSLQAGDVLFIDEIHRLNHVVEEILYPAMEDFQLDLVIGQG 147 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARSVK++L RFTL+ ATTR GLLT PL+DRFG+ +RL +Y E L TI+QR A+L + Sbjct: 148 PGARSVKMDLPRFTLVGATTRTGLLTPPLRDRFGVVLRLEYYSPEQLVTIIQRTARLFRI 207 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A E+ RSRGTPRIA RLLRRVRDF+EV + +TRE+ADAAL L +D +G D Sbjct: 208 EIDEDGAMELGRRSRGTPRIANRLLRRVRDFSEVGGHRVVTREVADAALTMLNVDPLGLD 267 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L + F GGP+G+ET+S + E + +ED+ EP++IQ GF+ RTPRGR+ Sbjct: 268 EMDRRILLTLIEKFQGGPIGLETLSTAVCEEKTTLEDVYEPFLIQSGFLVRTPRGRMATA 327 Query: 322 IAWQHL 327 A++H Sbjct: 328 AAYEHF 333 >gi|92113971|ref|YP_573899.1| Holliday junction DNA helicase B [Chromohalobacter salexigens DSM 3043] gi|123387446|sp|Q1QWF8|RUVB_CHRSD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|91797061|gb|ABE59200.1| Holliday junction DNA helicase RuvB [Chromohalobacter salexigens DSM 3043] Length = 350 Score = 365 bits (936), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 178/308 (57%), Positives = 229/308 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L E+ GQ L +FI AA+ R ++LDH L GPPGLGKTTLA ++A E+ V+ Sbjct: 23 IRPRRLAEYIGQPRVREQLDIFISAARKRGDSLDHTLVFGPPGLGKTTLANIIAAEMDVD 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGPV+ +AGDLAA+LTNL+ DVLFIDEIHRL VEE+LYPAMED+QLD+M+GEG Sbjct: 83 IKSTSGPVLERAGDLAAMLTNLQAGDVLFIDEIHRLPASVEEVLYPAMEDYQLDIMIGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY +E+L IV R A L G+ Sbjct: 143 PAARSIKLDLPAFTLVGATTRAGLLTSPLRDRFGIVQRLEFYAVEELTEIVVRSAHLLGV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA R+RGTPRIA RLLRRVRDFAEV +T IAD AL L +D+ G D Sbjct: 203 DAERDGAAEIARRARGTPRIANRLLRRVRDFAEVRGDGRLTAAIADQALNMLHVDRHGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L + F GGPVG+++++A +SE RD IED++EPY+IQQGF+ RT RGR++ Sbjct: 263 HMDRRLLMAMIEKFDGGPVGVDSLAAAISEERDTIEDVLEPYLIQQGFMMRTARGRVVTR 322 Query: 322 IAWQHLGI 329 A++H G+ Sbjct: 323 SAYEHFGL 330 >gi|225374902|ref|ZP_03752123.1| hypothetical protein ROSEINA2194_00525 [Roseburia inulinivorans DSM 16841] gi|225213285|gb|EEG95639.1| hypothetical protein ROSEINA2194_00525 [Roseburia inulinivorans DSM 16841] Length = 330 Score = 365 bits (936), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 171/325 (52%), Positives = 243/325 (74%), Gaps = 1/325 (0%) Query: 7 LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S V ED I LRP+TL+++ GQ +A NLKV+IEAAK R E+LDHVLF GPPGL Sbjct: 5 VISTQVQDEDIKIEKNLRPQTLDDYIGQQKAKKNLKVYIEAAKQRGESLDHVLFFGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+G + + TSGP I K G++AA+L+NL++ D+LF+DEIHRL+ VEE+L Sbjct: 65 GKTTLAGIIANEMGTHMKITSGPAIGKPGEMAAILSNLQEGDILFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+M+G+G +ARS++++L +FTL+ ATTR GLL+ PL+DRFG+ L FY + Sbjct: 125 YPAMEDYVIDIMIGKGATARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVIHHLEFYTV 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++LKTI+ ++ G+ + ++ A E+A RSRGTPR+A RLL+RVRDFAEV + IT+++ Sbjct: 185 DELKTIIIHSSEKLGVEIDEDGAYELARRSRGTPRLANRLLKRVRDFAEVKYDGRITKDV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +DK G DQ D L I F GGPVG++T++A + E IED+ EPY++ Sbjct: 245 ASFALDLLEVDKFGLDQNDRNILMTIIEKFQGGPVGLDTLAASIGEDSGTIEDVYEPYLV 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330 Q GF+ RTP+GR++ +A+QH GI+ Sbjct: 305 QNGFVIRTPKGRMVTDLAYQHFGIE 329 >gi|327394172|dbj|BAK11594.1| Holliday junction DNA helicase RuvB [Pantoea ananatis AJ13355] Length = 304 Score = 365 bits (936), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 180/294 (61%), Positives = 226/294 (76%) Query: 36 ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD 95 S K AA+ R +ALDH+L GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGD Sbjct: 7 CVSRWKFSSRAAQLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGD 66 Query: 96 LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 LAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FT Sbjct: 67 LAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFT 126 Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 LI ATTR G LT+PL+DRFGI RL FY+++DL+ IV R A GLA+++EAA EIA RS Sbjct: 127 LIGATTRAGSLTSPLRDRFGIVQRLEFYQVKDLQHIVGRSAACLGLALSEEAALEIARRS 186 Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275 RGTPRIA RLLRRVRDFAEV ++ +++ AL L +D GFD +D + L I F Sbjct: 187 RGTPRIANRLLRRVRDFAEVRANGVLSGDVSVTALDMLNVDSEGFDYMDRKLLLAIIDKF 246 Query: 276 GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 GGPVG++ ++A + E R+ IED+IEP++IQQGFIQRTPRGR+ A++H GI Sbjct: 247 TGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGFIQRTPRGRMATQHAYRHFGI 300 >gi|302671007|ref|YP_003830967.1| holliday junction DNA helicase RuvB [Butyrivibrio proteoclasticus B316] gi|302395480|gb|ADL34385.1| holliday junction DNA helicase RuvB [Butyrivibrio proteoclasticus B316] Length = 343 Score = 364 bits (935), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 171/323 (52%), Positives = 243/323 (75%), Gaps = 1/323 (0%) Query: 13 SQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 +QEDA I LRP+ L+ + GQ + +LK++IEAAK R ++LDH+LF GPPGLGKTTLA Sbjct: 18 NQEDARIEGSLRPKRLDNYIGQKKIKESLKIYIEAAKKRGDSLDHLLFYGPPGLGKTTLA 77 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A E+GVN + TSGP I K GD+AA+L NL++ DVLF+DEIHRL+ VEE+LYPAMED Sbjct: 78 GIIAAEMGVNIKITSGPAIEKPGDMAAILNNLQEGDVLFVDEIHRLNRQVEEVLYPAMED 137 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + +D+M+G+GP+ARS++++L FTLI ATTR G+L+ PL+DRFG+ R+ +Y+I++L TI Sbjct: 138 YAIDIMIGKGPTARSIRLDLPHFTLIGATTRAGMLSAPLRDRFGMIHRMEYYDIDELSTI 197 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 + + A + G+ V ++ A E+A RSRGTPR+A R+L+RVRDFA+V + IT +IA AL Sbjct: 198 IMQSAGVLGVEVDEKGAVEMARRSRGTPRLANRILKRVRDFAQVKYDGRITEDIAITALD 257 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 + +DKMG D D L + FGGGPVG++T++A + E IED+ EPY+I+ GF+ Sbjct: 258 LMDVDKMGLDHTDRNLLMTMIGKFGGGPVGLDTLAAAIGEDSGTIEDVYEPYLIKNGFLN 317 Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334 RTPRGR++ A+ HLG+++P R Sbjct: 318 RTPRGRVVTEEAYHHLGLEMPAR 340 >gi|153855298|ref|ZP_01996464.1| hypothetical protein DORLON_02478 [Dorea longicatena DSM 13814] gi|149752297|gb|EDM62228.1| hypothetical protein DORLON_02478 [Dorea longicatena DSM 13814] Length = 328 Score = 364 bits (935), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 174/317 (54%), Positives = 238/317 (75%), Gaps = 1/317 (0%) Query: 14 QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED I + LRP+ LE++ GQ +A LK++IEAAKAR EALDH+LF GPPGLGKTTLA Sbjct: 7 EEDVRIENHLRPQLLEDYIGQAKAKEMLKIYIEAAKARGEALDHLLFYGPPGLGKTTLAG 66 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+ VN + TSGP I K G++AA+L NL++ D+LF+DEIHRL+ VEE+LYPAMED+ Sbjct: 67 IIANEMNVNMKITSGPAIEKPGEMAAILNNLQEGDILFVDEIHRLNRQVEEVLYPAMEDY 126 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+M+G+G SARS++++L +FTL+ ATTR G+LT PL+DRFG+ R+ +Y +E+LK I+ Sbjct: 127 AIDIMIGKGASARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVTRMEYYTVEELKMII 186 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R AK+ + + + A +A RSRGTPR+A RLL+RVRDFA+V + IT E+AD AL Sbjct: 187 LRSAKVLEVGIDENGAYAMARRSRGTPRLANRLLKRVRDFAQVKYNGYITEEVADYALDL 246 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +DK G DQ D L + FGGGPVG+ET++A + E IED+ EPY+++ GFIQR Sbjct: 247 LDVDKEGLDQTDRGILLAMIGKFGGGPVGLETLAASIGEDPGTIEDVYEPYLLKNGFIQR 306 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR++ A+ HLGI Sbjct: 307 TPRGRVVTDAAYAHLGI 323 >gi|167766363|ref|ZP_02438416.1| hypothetical protein CLOSS21_00867 [Clostridium sp. SS2/1] gi|317496791|ref|ZP_07955121.1| Holliday junction DNA helicase RuvB [Lachnospiraceae bacterium 5_1_63FAA] gi|167711954|gb|EDS22533.1| hypothetical protein CLOSS21_00867 [Clostridium sp. SS2/1] gi|291559234|emb|CBL38034.1| Holliday junction DNA helicase, RuvB subunit [butyrate-producing bacterium SSC/2] gi|316895803|gb|EFV17955.1| Holliday junction DNA helicase RuvB [Lachnospiraceae bacterium 5_1_63FAA] Length = 334 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 178/327 (54%), Positives = 241/327 (73%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S + +ED I + LRP+ L ++ GQ + NLK+FIEAAK+R E+LDHVLF GPPGL Sbjct: 5 MISTELVEEDIKIENHLRPQMLSDYIGQEKVKENLKIFIEAAKSRGESLDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA +VA E+GV+ + TSGP I K G++AA+L NL++ DVLFIDEIHRL+ VEE+L Sbjct: 65 GKTTLAGIVANEMGVHLKVTSGPAIEKPGEIAAILNNLQEGDVLFIDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D++VG+G +ARS+++ L RFTL+ ATTR G+LT PL+DRFG+ RLNFY Sbjct: 125 YPAMEDYAIDILVGKGQAARSIRLELPRFTLVGATTRAGMLTAPLRDRFGVVNRLNFYNS 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+L+TI++R A++ + + E A EIA RSRGTPR+A RLL+RVRDFA+V + IT EI Sbjct: 185 EELQTIIERSAEVLEIGIDPEGALEIARRSRGTPRLANRLLKRVRDFAQVKYDGQITLEI 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +D +G DQ D L + F G PVG++T++A + E IED+ EPY+I Sbjct: 245 ARDALNHLEVDTIGLDQTDRNLLKTMMETFEGRPVGLDTLAAAIGEDSGTIEDVYEPYLI 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Q G IQRTPRGR++ A++H + IP Sbjct: 305 QNGLIQRTPRGRVVTRSAYEHFHLPIP 331 >gi|89895212|ref|YP_518699.1| Holliday junction DNA helicase B [Desulfitobacterium hafniense Y51] gi|219669643|ref|YP_002460078.1| Holliday junction DNA helicase RuvB [Desulfitobacterium hafniense DCB-2] gi|122997256|sp|Q24UN7|RUVB_DESHY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767424|sp|B8FQV5|RUVB_DESHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|89334660|dbj|BAE84255.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539903|gb|ACL21642.1| Holliday junction DNA helicase RuvB [Desulfitobacterium hafniense DCB-2] Length = 348 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 180/316 (56%), Positives = 234/316 (74%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D + +LRP L ++ GQ + NL++FI+AA AR EALDHVL GPPGLGKTTLA ++A Sbjct: 14 DQEGEVLRPHRLADYIGQTKVKDNLQIFIQAALARGEALDHVLLYGPPGLGKTTLANIIA 73 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 E+ VN R+TSGP I + GDLAA+LT+LE RDVLFIDEIHRLS EEILY AMED LD Sbjct: 74 TEMEVNIRTTSGPAIERPGDLAAILTSLEPRDVLFIDEIHRLSRTTEEILYSAMEDGCLD 133 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G+GPSARS+++ L FTL+ ATTR G L +PL+DRFG+ RL FYE+EDL I+ R Sbjct: 134 IVIGKGPSARSIRLTLPPFTLVGATTRAGQLASPLRDRFGVISRLEFYEVEDLIRIITRA 193 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A + L +T E A EIA RSRGTPR+A RLL+RVRD+A+V +T+E+A +L RL + Sbjct: 194 AGILNLQITLEGASEIARRSRGTPRVANRLLKRVRDYAQVWEDGRVTQELAGKSLDRLEV 253 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D G D++D + L I + F GGPVG+ET+SA + E + IED++EPY++QQGFIQRTPR Sbjct: 254 DPAGLDRIDQKCLLTIIQMFAGGPVGLETLSATIGEEAETIEDVVEPYLLQQGFIQRTPR 313 Query: 316 GRLLMPIAWQHLGIDI 331 GR+ A+QHL I + Sbjct: 314 GRVATVRAYQHLNIPV 329 >gi|331083812|ref|ZP_08332921.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae bacterium 6_1_63FAA] gi|330403237|gb|EGG82797.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae bacterium 6_1_63FAA] Length = 329 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 173/308 (56%), Positives = 233/308 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ +A NLKV+IEAAK R +ALDHVLF GPPGLGKTTLA ++A ELGV+ Sbjct: 21 LRPQLLNDYIGQEKAKKNLKVYIEAAKQRGDALDHVLFYGPPGLGKTTLAGIIANELGVH 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+LYPAMED+ +D+M+G+G Sbjct: 81 MKVTSGPAIEKPGEMAAILNNLQENDVLFVDEIHRLNRQVEEVLYPAMEDYAIDIMIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +ARS++++L +FTL+ ATTR GLLT PL+DRFG+ L FY E+L+TI+ R AK+ G+ Sbjct: 141 ATARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVHHLEFYTEEELQTIIIRSAKVLGV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A E+A RSRGTPR+A RLL+RVRDFA+V + IT+E+AD A+ L +D+ G D Sbjct: 201 EIDEAGALEMAKRSRGTPRLANRLLKRVRDFAQVKYDGKITKEVADFAMDLLEVDRYGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q D LT I F GGPVG++T+SA + E IED+ EPY+I+ GF+ RTPRGR + Sbjct: 261 QTDRLLLTTIIERFLGGPVGLDTLSAAIGEDAGTIEDVYEPYLIKNGFLLRTPRGRTVTE 320 Query: 322 IAWQHLGI 329 + + HLGI Sbjct: 321 LTYHHLGI 328 >gi|227825065|ref|ZP_03989897.1| holliday junction DNA helicase ruvB [Acidaminococcus sp. D21] gi|226905564|gb|EEH91482.1| holliday junction DNA helicase ruvB [Acidaminococcus sp. D21] Length = 335 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 176/312 (56%), Positives = 233/312 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L+E+ GQ + N+ VFI+AA R EALDHVL GPPGLGKTTLA ++A ELGVN Sbjct: 22 LRPRRLQEYIGQEKVKENMTVFIQAALKRREALDHVLLYGPPGLGKTTLANIIANELGVN 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP + + GDLAA+LTNL++ +VLFIDEIHRL VEEILY AMED+ LD+++G+G Sbjct: 82 IRITSGPALERQGDLAAILTNLDESEVLFIDEIHRLPKTVEEILYSAMEDYALDIIIGKG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+++L RFTLI ATTR+G + PL+DRFG+ L FY E+L+ IV+R A++ + Sbjct: 142 PAARSVRLDLPRFTLIGATTRMGSVAAPLRDRFGVICHLEFYTAEELQIIVERAAEILNV 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A EI RSRGTPR+A RLL+RVRDFAEVA A TIT+EI + RL ID +G D Sbjct: 202 KIDHEGAYEIGRRSRGTPRVANRLLKRVRDFAEVAGADTITKEICRKTMERLEIDDLGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D R LT + ++FGG PVG++T++A L+E + +ED+ EPY++Q G +QRTP+GR Sbjct: 262 RSDRRLLTKLVKDFGGRPVGVDTLAASLNEESETLEDVYEPYLMQLGMLQRTPKGRQATA 321 Query: 322 IAWQHLGIDIPH 333 A+++LGI P Sbjct: 322 AAYRYLGIAYPE 333 >gi|326201642|ref|ZP_08191513.1| Holliday junction DNA helicase RuvB [Clostridium papyrosolvens DSM 2782] gi|325988242|gb|EGD49067.1| Holliday junction DNA helicase RuvB [Clostridium papyrosolvens DSM 2782] Length = 335 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 184/326 (56%), Positives = 233/326 (71%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E L+ +D D LRP+ +E+ GQ +A NL VFIEAAK R EALDHVL GPPG Sbjct: 7 ERLVEAGNRSDDFDEVSLRPKRFDEYIGQSKAKGNLTVFIEAAKRRKEALDHVLLYGPPG 66 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA +++ E+GVN R TSGP I KAGDLAA+LTNL DVLFIDEIHRL+ VEEI Sbjct: 67 LGKTTLASIISLEMGVNLRITSGPAIEKAGDLAAILTNLGTHDVLFIDEIHRLNRSVEEI 126 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT PL+DRFG+ +L Y Sbjct: 127 LYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTAPLRDRFGVINKLEMYT 186 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 E+LK IV R A + + + E A EIA RSRGTPRIA RLL+RVRDFA+V + I E Sbjct: 187 SEELKEIVIRSAGILNIGLDQEGAYEIARRSRGTPRIANRLLKRVRDFAQVKGSGVIELE 246 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A AL L +D++G D +D L I FGGGPVG++T++A + E IED+ EPY+ Sbjct: 247 LAKHALDALEVDEIGLDGVDRNMLLSIINKFGGGPVGLDTLAASIGEESGTIEDVYEPYL 306 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330 IQ GFI +TPRGR+ A+ H G++ Sbjct: 307 IQLGFINKTPRGRMATKNAYAHFGLE 332 >gi|220932068|ref|YP_002508976.1| Holliday junction DNA helicase RuvB [Halothermothrix orenii H 168] gi|219993378|gb|ACL69981.1| Holliday junction DNA helicase RuvB [Halothermothrix orenii H 168] Length = 342 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 178/336 (52%), Positives = 242/336 (72%), Gaps = 4/336 (1%) Query: 2 MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 MD E + +ED D++L LRP L F GQ + L +FIEAA R E LDHVL Sbjct: 1 MDLENRIISPEKKED-DMALDRSLRPERLNNFIGQEKVKEKLSIFIEAAITRQEPLDHVL 59 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA ++A EL V+ +TSGP I + GDLAA+LTNL+ +DVLFIDEIHRL+ Sbjct: 60 LYGPPGLGKTTLANIIANELNVSIHTTSGPAIERPGDLAAILTNLQPKDVLFIDEIHRLN 119 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEE+LYPAMED+ LD+++G+GPSARS++++L FTL+ ATTR GLL++PL+DRFG+ Sbjct: 120 KVVEEVLYPAMEDYSLDIIIGKGPSARSIRLDLPPFTLVGATTRAGLLSSPLRDRFGVIN 179 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL FY ++L I++R A++ G+ V ++ A EI+ RSRGTPRIA RLL+RVRD+AEV Sbjct: 180 RLEFYGTDELAEIIKRSARVLGIEVNEDGAVEISKRSRGTPRIANRLLKRVRDYAEVKAD 239 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 I E+ D AL L ID++G D +D + L I + F GGPVG+ T++A +SE + IED Sbjct: 240 GIIDTEVVDKALKLLEIDELGLDHIDHKLLKTIIKKFNGGPVGLNTLAASISEETETIED 299 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 + EPY++Q GFI+RTPRGR+ A++HL +D ++ Sbjct: 300 VYEPYLLQLGFIERTPRGRVATLAAYEHLDVDYKNK 335 >gi|291544345|emb|CBL17454.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus sp. 18P13] Length = 336 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 179/308 (58%), Positives = 230/308 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL E+ GQ + NL V+IEAA+ R E LDHVL GPPGLGKTTLA ++A+E+GVN Sbjct: 17 LRPKTLNEYIGQDKVKENLAVYIEAARRRGEPLDHVLLYGPPGLGKTTLAGIIAQEMGVN 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I KAGDLAALLTNL + DVLFIDEIHRLS VEE+LYPAMED LD+++G+G Sbjct: 77 LRITSGPAIEKAGDLAALLTNLSENDVLFIDEIHRLSRAVEEVLYPAMEDNALDIVIGKG 136 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSA S++++L +FTL+ ATTR G LT+PL+DRFGI RL Y E L I++R + L G+ Sbjct: 137 PSANSIRVDLPKFTLVGATTRAGQLTSPLRDRFGIIQRLELYPPEQLCDIIRRSSMLLGI 196 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A E+A R+RGTPRIA RLL+RVRDFA+V I+R+IA AL +L ID++G D Sbjct: 197 PCEYDGAMELARRARGTPRIANRLLKRVRDFADVMGDGRISRQIACTALDKLEIDELGLD 256 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R L MI + + GGPVG+ET+++ + E +ED+ EPY++Q GF+ RTPRGR Sbjct: 257 SLDKRMLQMIIKGYNGGPVGLETLASAIGEEAVTLEDVCEPYLMQLGFLSRTPRGRCATQ 316 Query: 322 IAWQHLGI 329 +A+QHLGI Sbjct: 317 LAYQHLGI 324 >gi|218288864|ref|ZP_03493115.1| Holliday junction DNA helicase RuvB [Alicyclobacillus acidocaldarius LAA1] gi|218240953|gb|EED08130.1| Holliday junction DNA helicase RuvB [Alicyclobacillus acidocaldarius LAA1] Length = 332 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 179/328 (54%), Positives = 242/328 (73%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E L+S +EDA + +RPR L+++ GQ NL++FI+AAK R E LDHVL GPPG Sbjct: 3 ERLISAEWMREDAQLDTIRPRFLDDYIGQRAVVENLRIFIQAAKERGEPLDHVLLYGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKT+LA ++A ELGV R TSGP I +AGDLAA+LTNL+ DV+FIDEIHRLS VEE+ Sbjct: 63 LGKTSLAMIIANELGVQIRVTSGPAIERAGDLAAILTNLQPGDVMFIDEIHRLSPSVEEV 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF +D+++G+GPSARSV+++L FTLI ATTR GLL++PL+DRFG+ + L++Y Sbjct: 123 LYPAMEDFAIDIVIGKGPSARSVRLDLPPFTLIGATTRAGLLSHPLRDRFGVMLHLDYYP 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 + DL IV+R A++ L++T++ EIA R+RGTPRIA RLL+RVRD A+VA I Sbjct: 183 VRDLAEIVKRNARILQLSITEDGCAEIARRARGTPRIANRLLKRVRDIAQVAGWPEIDAA 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 A AL +L +D +G D D R L FGGGPVG++T++A + E +ED+ EPY+ Sbjct: 243 RAAEALAQLHVDPLGLDATDKRILEAAMDKFGGGPVGLDTLAAAVGEEPSTLEDVYEPYL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +Q GF++RTPRGR++MP A++HLG +P Sbjct: 303 LQIGFLKRTPRGRVVMPSAYRHLGRVVP 330 >gi|297181901|gb|ADI18078.1| holliday junction resolvasome, helicase subunit [uncultured Acidobacteriales bacterium HF0200_23L05] Length = 339 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 187/334 (55%), Positives = 236/334 (70%), Gaps = 1/334 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+ E +LS EDA LRPR L+++ GQ NL V I A + R EALDHVL Sbjct: 1 MNTENILSTVQVDEDAQYEAGLRPRHLDDYIGQDRVRENLTVAITATRNREEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+ ELGV R TSGPV+ K GDLAALLTNL+DR+VLFIDEIHR+S Sbjct: 61 GPPGLGKTTLAYVIGNELGVQVRGTSGPVLEKPGDLAALLTNLKDREVLFIDEIHRMSSA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILY AMED++LD+++G+GP ARSVK+ L +FTLI ATTR GLLT+PL+ RFG+ RL Sbjct: 121 IEEILYSAMEDYELDIVIGQGPGARSVKVPLQKFTLIGATTRAGLLTSPLRARFGLVHRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FY DL I+ R A++ + + DEA E+A RSRGTPR+A RLLRRVRD+AEV Sbjct: 181 DFYTESDLVEIISRSARILDVPIVDEATGELARRSRGTPRVANRLLRRVRDYAEVRADGR 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT ++A AL L +D GFD+ D R L I F GGPVG+ +I+A +SE ++AIED+ Sbjct: 241 ITIDVARQALTLLEVDDQGFDEADRRLLRAIIDKFNGGPVGLNSIAAAISEEKEAIEDIY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY+IQ GF+ RTPRGR+ A+ + G+ P R Sbjct: 301 EPYLIQLGFLDRTPRGRVATARAYDYFGLPTPDR 334 >gi|294501381|ref|YP_003565081.1| holliday junction DNA helicase RuvB [Bacillus megaterium QM B1551] gi|294351318|gb|ADE71647.1| holliday junction DNA helicase RuvB [Bacillus megaterium QM B1551] Length = 333 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 174/311 (55%), Positives = 237/311 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+++ GQ + S+L +FI+AAK R+E LDHVL GPPGLGKTTLA ++A E+GV Sbjct: 21 LRPQTLQQYIGQHKVKSHLDIFIKAAKMRSETLDHVLLYGPPGLGKTTLATIIANEMGVQ 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP I + GDLAA+LT+LE DVLFIDEIHRL+ VEE+LYPAMEDF LD+++G+G Sbjct: 81 IRTTSGPAIERPGDLAAVLTSLEPGDVLFIDEIHRLNRSVEEVLYPAMEDFCLDIVIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV+++L FTL+ ATTR GLL++PL+DRFG+ RL +Y+ EDL +IV+R A + + Sbjct: 141 PSARSVRLDLPPFTLVGATTRAGLLSSPLRDRFGVLSRLEYYQEEDLASIVERTAAILDV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++A E+A R+RGTPRIA RLLRRVRDFA+V IT +A+ AL L +D++G D Sbjct: 201 EIDEKATFEMARRARGTPRIANRLLRRVRDFAQVKGDGAITERLANEALEMLQVDRLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++TISA + E IED+ EPY++Q GF+QRTPRGR++ P Sbjct: 261 HIDHKLLRGIIEKFRGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFLQRTPRGRIVTP 320 Query: 322 IAWQHLGIDIP 332 + + H +++P Sbjct: 321 LVYDHFQLEVP 331 >gi|212212079|ref|YP_002303015.1| Holliday junction DNA helicase RuvB [Coxiella burnetii CbuG_Q212] gi|226698773|sp|B6IYU2|RUVB_COXB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|212010489|gb|ACJ17870.1| holliday junction DNA helicase [Coxiella burnetii CbuG_Q212] Length = 351 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 180/311 (57%), Positives = 225/311 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ + +FI AA R EALDHVL GPPGLGKTTLA ++A E+ Sbjct: 25 IRPKRLSDYIGQAAVREQMDIFIRAATNRREALDHVLIFGPPGLGKTTLAHIIAHEMQAG 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ KAGDLAALLTNLE DVLFIDEIHRL+ +EE+LYPA+EDFQLD+++GEG Sbjct: 85 LKQTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLNPAIEEVLYPALEDFQLDIIIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY I DL IV+R A + + Sbjct: 145 PSARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYRIPDLIHIVKRAAHILNV 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRIA RLLRRVRDFAEV I IA AL L +D G D Sbjct: 205 VIDENGAGEIARRSRGTPRIANRLLRRVRDFAEVRANGMINESIAKEALDLLNVDIRGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I + F GGPVGIE+++A +SE R IED+IEPY+IQ+GFI RTPRGR+ Sbjct: 265 VMDRKLLETIIKKFQGGPVGIESLAAAISEERGTIEDVIEPYLIQEGFILRTPRGRIATE 324 Query: 322 IAWQHLGIDIP 332 + +QH + +P Sbjct: 325 LTYQHFKLPLP 335 >gi|323698438|ref|ZP_08110350.1| Holliday junction DNA helicase RuvB [Desulfovibrio sp. ND132] gi|323458370|gb|EGB14235.1| Holliday junction DNA helicase RuvB [Desulfovibrio desulfuricans ND132] Length = 328 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 177/306 (57%), Positives = 232/306 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L +F GQV+ +NL VFI AA+ R +LDH LF G PGLGKTTLA+++A ELGVN Sbjct: 11 VRPRKLSDFIGQVDLRTNLDVFIRAARERDRSLDHTLFYGNPGLGKTTLARIMASELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 STSGPVI ++GDLAA+LTNLE D+LFIDEIHR+ VEE+LYPAMEDFQ+DL++G G Sbjct: 71 MVSTSGPVIERSGDLAAILTNLERGDILFIDEIHRMPPTVEEVLYPAMEDFQIDLVIGSG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+VK++L FTL+ ATTR+GLLT+PL+DRFG R+ FY E+L IV+R A + G+ Sbjct: 131 PGARTVKLDLEPFTLVGATTRLGLLTSPLRDRFGCIFRIEFYSPEELGRIVERSAAILGV 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V E A I R+RGTPRIA RLLRRVRD+A V + +TRE+A+++L RL +D+ G D Sbjct: 191 KVEPEGALAIGRRARGTPRIANRLLRRVRDYALVHGSGVVTRELAESSLERLDVDQYGLD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + LT++ +F GGPVG++TI+A +E IED+ EPY+IQ GF++RTPRGR+ Sbjct: 251 NMDRKILTLMVEHFNGGPVGLKTIAAACAEEVRTIEDIYEPYLIQCGFLKRTPRGRVATA 310 Query: 322 IAWQHL 327 A+QHL Sbjct: 311 KAYQHL 316 >gi|29654861|ref|NP_820553.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 493] gi|153208757|ref|ZP_01946995.1| Holliday junction DNA helicase RuvB [Coxiella burnetii 'MSU Goat Q177'] gi|154706412|ref|YP_001423838.1| Holliday junction DNA helicase RuvB [Coxiella burnetii Dugway 5J108-111] gi|161829825|ref|YP_001597406.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 331] gi|165918690|ref|ZP_02218776.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 334] gi|212219282|ref|YP_002306069.1| Holliday junction DNA helicase RuvB [Coxiella burnetii CbuK_Q154] gi|44888457|sp|Q83BE0|RUVB_COXBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189046028|sp|A9KF39|RUVB_COXBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189046029|sp|A9N9A3|RUVB_COXBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226698772|sp|B6J507|RUVB_COXB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|29542130|gb|AAO91067.1| holliday junction DNA helicase [Coxiella burnetii RSA 493] gi|120575789|gb|EAX32413.1| Holliday junction DNA helicase RuvB [Coxiella burnetii 'MSU Goat Q177'] gi|154355698|gb|ABS77160.1| holliday junction DNA helicase [Coxiella burnetii Dugway 5J108-111] gi|161761692|gb|ABX77334.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 331] gi|165917625|gb|EDR36229.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 334] gi|212013544|gb|ACJ20924.1| holliday junction DNA helicase [Coxiella burnetii CbuK_Q154] Length = 351 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 183/327 (55%), Positives = 231/327 (70%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L+ V + D+ +RP+ L ++ GQ + +FI AA R EALDHVL GPPGL Sbjct: 9 LIGATVQSNEPDLERSIRPKRLSDYIGQAAVREQMDIFIRAATNRREALDHVLIFGPPGL 68 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+ + TSGPV+ KAGDLAALLTNLE DVLFIDEIHRL+ +EE+L Sbjct: 69 GKTTLAHIIAHEMQAGLKQTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLNPAIEEVL 128 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPA+EDFQLD+++GEGPSARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY I Sbjct: 129 YPALEDFQLDIIIGEGPSARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYRI 188 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 DL IV+R A + + + + A EIA RSRGTPRIA RLLRRVRDFAEV I I Sbjct: 189 PDLIHIVKRAAHILNVVIDENGAGEIARRSRGTPRIANRLLRRVRDFAEVRANGMINESI 248 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +D G D +D + L I + F GGPVGIE+++A +SE R IED+IEPY+I Sbjct: 249 AKEALDLLNVDIRGLDVMDRKLLETIIKKFQGGPVGIESLAAAISEERGTIEDVIEPYLI 308 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Q+GFI RTPRGR+ + +QH + +P Sbjct: 309 QEGFILRTPRGRIATELTYQHFKLPLP 335 >gi|149370926|ref|ZP_01890521.1| Holliday junction DNA helicase B [unidentified eubacterium SCB49] gi|149355712|gb|EDM44270.1| Holliday junction DNA helicase B [unidentified eubacterium SCB49] Length = 340 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 185/319 (57%), Positives = 233/319 (73%), Gaps = 1/319 (0%) Query: 11 NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N+S +D DI LRP + E+FTGQ +A NL++F++AA R EALDH LF GPPGLGKTT Sbjct: 11 NLSPQDLDIEKTLRPLSFEDFTGQDQALENLQIFVQAANQRGEALDHALFHGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A EL V + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS IVEE LY AM Sbjct: 71 LAHILANELEVGIKVTSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSPIVEEYLYSAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D+M+ GP+ARSV+I+L+ FTL+ ATTR GLLT P++ RFGI RL +Y E L Sbjct: 131 EDYKIDIMIESGPNARSVQIHLAPFTLVGATTRSGLLTAPMRARFGISSRLQYYSTELLT 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 TI+QR A + + ++ EAA EIA RSRGTPRIA LLRRVRDFA++ I IA A Sbjct: 191 TILQRSAGILNMPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGDGNIDITIAKFA 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D G D++D + LT I F GGPVGI TI+ +SE + IE++ EP++IQQGF Sbjct: 251 LNALNVDAHGLDEMDNKILTTIIDKFKGGPVGITTIATAVSESPETIEEVYEPFLIQQGF 310 Query: 310 IQRTPRGRLLMPIAWQHLG 328 I RTPRGR + A++HLG Sbjct: 311 IMRTPRGREVTEAAYKHLG 329 >gi|297588494|ref|ZP_06947137.1| crossover junction ATP-dependent DNA helicase RuvB [Finegoldia magna ATCC 53516] gi|297573867|gb|EFH92588.1| crossover junction ATP-dependent DNA helicase RuvB [Finegoldia magna ATCC 53516] Length = 335 Score = 363 bits (931), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 178/317 (56%), Positives = 230/317 (72%), Gaps = 1/317 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + ED D +L RP+ + ++ GQ + L +FIEAAK R E LDH L GPPGLGKTTLA Sbjct: 16 TDEDIDFNL-RPKWMSDYIGQDKVKKKLSIFIEAAKNRNEPLDHALLYGPPGLGKTTLAH 74 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+GVN R TSGP I K DLA++LTNL+ DVLFIDEIHR++ VEEILYPAMED+ Sbjct: 75 IIANEMGVNLRVTSGPAIEKPSDLASILTNLQKDDVLFIDEIHRINRSVEEILYPAMEDY 134 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 LD++VG+GPSARS++I+L +FTLI ATTR G LT PL+DRFG+ + L Y+IE LK IV Sbjct: 135 ALDIIVGKGPSARSLRIDLEKFTLIGATTRSGQLTGPLRDRFGVLLNLELYDIESLKKIV 194 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A + G+ + +E A EIA RSRGTPRIA RLL+RVRD+AEV TIT+EI++ L Sbjct: 195 TRSAGVLGIGIDEEGAMEIARRSRGTPRIANRLLKRVRDYAEVRADGTITKEISNRGLNL 254 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +DK G D +D + + + NF GGPVG++TI+A E R IED+ EPY++Q GFI R Sbjct: 255 LEVDKCGLDYVDRKIIMTMINNFDGGPVGVDTIAAATGEERITIEDVYEPYLLQIGFINR 314 Query: 313 TPRGRLLMPIAWQHLGI 329 T RGR++ A++H I Sbjct: 315 TSRGRIVTDKAYKHFNI 331 >gi|288555343|ref|YP_003427278.1| Holliday junction DNA helicase RuvB [Bacillus pseudofirmus OF4] gi|288546503|gb|ADC50386.1| Holliday junction DNA helicase RuvB [Bacillus pseudofirmus OF4] Length = 333 Score = 363 bits (931), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 178/320 (55%), Positives = 236/320 (73%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED+ +RP L ++ GQ + NLK+FIEAAK R E LDHVL GPPGLGKTTL+ ++ Sbjct: 14 EDSIDQSIRPMDLNQYIGQEKVKQNLKIFIEAAKMREECLDHVLLYGPPGLGKTTLSGII 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GV R+TSGP I + GDLAA+LT LE DVLFIDEIHRL+ +VEE+LYPAMEDF L Sbjct: 74 ASEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRMVEEVLYPAMEDFCL 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+++G+GP+ARSV+++L FTL+ ATTR G+L+ PL+DRFG+ RL +Y +L IV+R Sbjct: 134 DIVIGKGPTARSVRLDLPPFTLVGATTRAGMLSAPLRDRFGVMARLEYYTEAELAFIVKR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + + DEAA EIA RSRGTPRIA RLLRRVRDFA+V TI ++A+ AL +L Sbjct: 194 TASIFETELDDEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGTIPVDLAEDALEKLQ 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D++G D +D + L + F GGPVG+ETISA + E + IED+ EPY++Q GF+QRTP Sbjct: 254 VDRLGLDHIDHKLLIGMIEKFRGGPVGLETISATIGEESETIEDVYEPYLLQIGFLQRTP 313 Query: 315 RGRLLMPIAWQHLGIDIPHR 334 RGR++ P+ +QH ++ P R Sbjct: 314 RGRMVTPLCYQHFNLEEPSR 333 >gi|295706728|ref|YP_003599803.1| holliday junction DNA helicase RuvB [Bacillus megaterium DSM 319] gi|294804387|gb|ADF41453.1| holliday junction DNA helicase RuvB [Bacillus megaterium DSM 319] Length = 333 Score = 363 bits (931), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 174/311 (55%), Positives = 237/311 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+++ GQ + S+L +FI+AAK R+E LDHVL GPPGLGKTTLA ++A E+GV Sbjct: 21 LRPQTLQQYIGQHKVKSHLDIFIKAAKMRSETLDHVLLYGPPGLGKTTLATIIANEMGVQ 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP I + GDLAA+LT+LE DVLFIDEIHRL+ VEE+LYPAMEDF LD+++G+G Sbjct: 81 IRTTSGPAIERPGDLAAVLTSLEPGDVLFIDEIHRLNRSVEEVLYPAMEDFCLDIVIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV+++L FTL+ ATTR GLL++PL+DRFG+ RL +Y+ EDL +IV+R A + + Sbjct: 141 PSARSVRLDLPPFTLVGATTRAGLLSSPLRDRFGVLSRLEYYQEEDLASIVERTAAILDV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++A E+A R+RGTPRIA RLLRRVRDFA+V IT +A+ AL L +D++G D Sbjct: 201 EIDEKATFEMARRARGTPRIANRLLRRVRDFAQVKGDGAITERLANEALEMLQVDRLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG++TISA + E IED+ EPY++Q GF+QRTPRGR++ P Sbjct: 261 HIDHKLLRGIIEKFRGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFLQRTPRGRIVTP 320 Query: 322 IAWQHLGIDIP 332 + + H +++P Sbjct: 321 LVYGHFQLEVP 331 >gi|260437053|ref|ZP_05790869.1| holliday junction DNA helicase RuvB [Butyrivibrio crossotus DSM 2876] gi|292810362|gb|EFF69567.1| holliday junction DNA helicase RuvB [Butyrivibrio crossotus DSM 2876] Length = 333 Score = 363 bits (931), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 179/329 (54%), Positives = 236/329 (71%), Gaps = 2/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MDR +++ + ED I + LRP +L+E+ GQ NLKVFIEAAK+R E+LDH LF Sbjct: 1 MDRR-IITTEFTSEDVKIENNLRPSSLDEYIGQTAIKENLKVFIEAAKSRNESLDHCLFY 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+GVN + TSGP I K GD+AA+L NL D D+LFIDEIHRL+ Sbjct: 60 GPPGLGKTTLAGVIAAEMGVNIKVTSGPTIEKPGDMAAILNNLSDGDILFIDEIHRLNRQ 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF +D+M+G+G +ARS++++L FTL+ ATTR GLLT PL+DRFG+ RL Sbjct: 120 VEEVLYPAMEDFAIDIMIGKGQTARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVVNRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y I++LK I+ R A + + + A E+A RSRGTPR+A RLL+RVRDFA+V + Sbjct: 180 EYYTIDELKNIIIRSAGVLKAPIDKDGATELARRSRGTPRLANRLLKRVRDFAQVKYDGI 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ITRE+ D +L L +DK G D+ D L I +GGGPVG++T++A L E +ED+ Sbjct: 240 ITREVVDYSLDLLEVDKEGLDKNDRNILFTIIEKYGGGPVGLDTLAASLGEDAGTLEDVY 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY+I GFI RTPRGR++ + H GI Sbjct: 300 EPYLIFNGFINRTPRGRMVTEHCYNHFGI 328 >gi|78045225|ref|YP_360354.1| Holliday junction DNA helicase RuvB [Carboxydothermus hydrogenoformans Z-2901] gi|97189970|sp|Q3ABY0|RUVB_CARHZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|77997340|gb|ABB16239.1| Holliday junction DNA helicase RuvB [Carboxydothermus hydrogenoformans Z-2901] Length = 339 Score = 363 bits (931), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 185/325 (56%), Positives = 235/325 (72%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E L+S ED + LRPR L E+ GQ + + +FIEAAK R EALDHVL GPPG Sbjct: 3 ERLVSGYELTEDENEFSLRPRRLSEYIGQQKVKETISIFIEAAKKRNEALDHVLLFGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A ELGV+ + TSGP + + GDLAA+LTNL ++DVLFIDEIHRL IVEE+ Sbjct: 63 LGKTTLATIIANELGVDIKITSGPALERPGDLAAILTNLGEKDVLFIDEIHRLPRIVEEV 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LY AMEDF LD+M+G+GP ARS++++L +FTLI ATTR GLLT+PL+DRFG+ RL FY Sbjct: 123 LYSAMEDFALDIMLGKGPGARSLRLSLPKFTLIGATTRAGLLTSPLRDRFGMVHRLEFYS 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+L I+ R A L +T E + EIA RSRGTPRIA RLL+RVRD+AEV + I E Sbjct: 183 VEELMLIINRSAALLKTEITPEGSFEIAKRSRGTPRIANRLLKRVRDYAEVRSSGVINLE 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 A AAL L ID++G D D L + + GGPVGIE I+A +SE D IED+ EP++ Sbjct: 243 NAKAALDLLEIDELGLDPTDRLILKTMIEKYQGGPVGIEAIAAAISEEVDTIEDVYEPFL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329 +Q GFI+RTPRGR++ +A+ HLGI Sbjct: 303 LQIGFIKRTPRGRVVTKLAYDHLGI 327 >gi|309388951|gb|ADO76831.1| Holliday junction DNA helicase subunit RuvB [Halanaerobium praevalens DSM 2228] Length = 335 Score = 363 bits (931), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 178/320 (55%), Positives = 234/320 (73%), Gaps = 3/320 (0%) Query: 13 SQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 Q+ D SL LRP L E+ GQ ++ LK+FI+AAK R EALDHV+ GPPGLGKTT Sbjct: 11 KQKKDDNSLDKGLRPLNLNEYVGQSKSKEKLKIFIQAAKDREEALDHVMLYGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A EL VN TSGP I + GDLA++LTNL+ DVLFIDEIHRL+ IVEE+LYPAM Sbjct: 71 LANIIANELNVNIHQTSGPAIERPGDLASILTNLQPSDVLFIDEIHRLNKIVEEVLYPAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+ LD+++G+GPSARSV+++L+ FTL+ ATT+ G L++PL+DRFG+ RL FY ++L+ Sbjct: 131 EDYCLDIIIGKGPSARSVRLDLAPFTLVGATTKAGRLSSPLRDRFGVINRLEFYNQKELQ 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IV R A + + + A EIA RSRGTPRIA RLL+RVRDFAEV I RE+ D+A Sbjct: 191 KIVTRSAAILKIEIVPHGALEIARRSRGTPRIANRLLKRVRDFAEVKADGIINREVVDSA 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L ID++G D++D + L I F GGPVG+ T++A +SE + IED+ EPY++Q GF Sbjct: 251 LKLLEIDELGLDRIDHKLLETIILKFRGGPVGLNTLAAAISEETETIEDVYEPYLLQLGF 310 Query: 310 IQRTPRGRLLMPIAWQHLGI 329 ++RTPRGR+ A+QHL I Sbjct: 311 LERTPRGRVATAKAYQHLNI 330 >gi|297170980|gb|ADI21995.1| holliday junction resolvasome, helicase subunit [uncultured myxobacterium HF0200_01L06] Length = 346 Score = 363 bits (931), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 192/330 (58%), Positives = 240/330 (72%), Gaps = 2/330 (0%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 +R L ++ +E+ LRPR+LEE GQ NL VF+ AA+ R EA+DHVLF GP Sbjct: 7 ERGSLSGGSLPEEERAEETLRPRSLEEMVGQDRLRENLSVFVRAAREREEAMDHVLFYGP 66 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKT+LA++VARE+ FR+TSGP I +AGDLAALL+NL+ DVLFIDEIHRLS +E Sbjct: 67 PGLGKTSLARIVAREMEAQFRATSGPSIERAGDLAALLSNLQPGDVLFIDEIHRLSPAIE 126 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 EILYPAMEDF LDLM+GEGPSARS+++ L RFTL+ ATTR GLLT+PL+DRFG RL + Sbjct: 127 EILYPAMEDFALDLMIGEGPSARSIRLELPRFTLVGATTRAGLLTSPLRDRFGWSARLEY 186 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--AHAKT 240 Y DL+ IV R A L G+AV EAA EIA RSRGTPRIA RLLRRVRDFAEV + Sbjct: 187 YPASDLERIVSRSAGLLGVAVESEAAREIAGRSRGTPRIANRLLRRVRDFAEVEGESGEA 246 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ++R+ A AL RL +D+ GFD LD + + F GPVG+ET+SA + E + IED++ Sbjct: 247 VSRDRARDALRRLEVDEAGFDGLDRALMRTLIDKFDSGPVGLETLSAAVGEDKGTIEDVV 306 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+I QGF+ RTPRGR+ A +H G++ Sbjct: 307 EPYLIFQGFLDRTPRGRVATRRAREHFGVE 336 >gi|325264008|ref|ZP_08130741.1| holliday junction DNA helicase RuvB [Clostridium sp. D5] gi|324031046|gb|EGB92328.1| holliday junction DNA helicase RuvB [Clostridium sp. D5] Length = 332 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 173/317 (54%), Positives = 236/317 (74%), Gaps = 1/317 (0%) Query: 14 QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED I S LRP+ LE++ GQ +A L ++I+AAK R EALDHVLF GPPGLGKTTLA Sbjct: 12 EEDVKIESSLRPQHLEDYIGQEKAKETLNIYIKAAKERQEALDHVLFYGPPGLGKTTLAG 71 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+LYPAMED+ Sbjct: 72 IIANEMGVNMKITSGPAIEKPGEMAAILNNLQEHDVLFVDEIHRLNRQVEEVLYPAMEDY 131 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+M+G+G +ARS++++L +FTL+ ATTR G+LT PL+DRFG+ L FY E+LKTI+ Sbjct: 132 AIDIMIGKGATARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVNHLEFYTEEELKTII 191 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A++ G+ + A E+A RSRGTPR+A RLL+RVRDFA+V + IT +A+ AL Sbjct: 192 MRSAQVLGVEIDVNGALELAKRSRGTPRLANRLLKRVRDFAQVKYDGVITEAVANYALDL 251 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +DK G D +D L + F GGPVG++T+SA +SE +ED+ EPY+++ GFIQR Sbjct: 252 LDVDKYGLDHIDRTILLTMIEKFQGGPVGLDTLSASISEDAGTLEDVYEPYLLKSGFIQR 311 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR+ +A+ HLGI Sbjct: 312 TPRGRVATELAYTHLGI 328 >gi|167564064|ref|ZP_02356980.1| Holliday junction DNA helicase B [Burkholderia oklahomensis EO147] Length = 339 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 188/310 (60%), Positives = 231/310 (74%), Gaps = 1/310 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + E+A LRPR L+E+ GQ + L++FIEAAK R+EALDHVL GPPGLGKTTLA Sbjct: 20 THEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAH 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+ Sbjct: 80 IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 Q+D+M+GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ E L IV Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A L + A EIA RSRGTPRIA RLLRRVRD+AEV +IT +ADAAL Sbjct: 200 RRSAALLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDYAEVRADGSITAAVADAALAM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI-Q 311 L +D +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFFAA 319 Query: 312 RTPRGRLLMP 321 PR R P Sbjct: 320 HAPRPRRDAP 329 >gi|256831253|ref|YP_003159981.1| Holliday junction DNA helicase RuvB [Desulfomicrobium baculatum DSM 4028] gi|256580429|gb|ACU91565.1| Holliday junction DNA helicase RuvB [Desulfomicrobium baculatum DSM 4028] Length = 324 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 175/306 (57%), Positives = 230/306 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL++F GQ + NLK++++AAK R + LDH L G PGLGKTTLAQ++A ELGVN Sbjct: 10 IRPRTLDDFIGQEDVRGNLKIYLQAAKERGQQLDHCLLYGNPGLGKTTLAQIMASELGVN 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 STSGPV+ ++GDLAA+LT+L D+LFIDEIHR+ +VEEILYP MEDF+LDL+VG+G Sbjct: 70 LVSTSGPVLERSGDLAAILTSLNRHDLLFIDEIHRMPPVVEEILYPGMEDFKLDLIVGQG 129 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+VKI L FTL+ ATTR+GLLT+PL+DRFG+ RL FY ++L IV R A++ GL Sbjct: 130 PGARTVKIELEPFTLVGATTRIGLLTSPLRDRFGVICRLEFYNPQELSLIVTRAARILGL 189 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ + A EI RSRGTPRIA RLLRRV D+A+VA + I E+A L + +D G D Sbjct: 190 QISADGALEIGKRSRGTPRIANRLLRRVADYAQVAGSAVIDAEVAAKGLDIMDVDSRGLD 249 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I +FGGGPVG++TI+A SE IED+ EPY+IQ GF++RTPRGR++ P Sbjct: 250 MMDRKILECIIDHFGGGPVGVKTIAAACSEEVRTIEDIYEPYLIQCGFLKRTPRGRVVTP 309 Query: 322 IAWQHL 327 A+QH+ Sbjct: 310 KAYQHI 315 >gi|150390103|ref|YP_001320152.1| Holliday junction DNA helicase B [Alkaliphilus metalliredigens QYMF] gi|172052478|sp|A6TQM5|RUVB_ALKMQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|149949965|gb|ABR48493.1| Holliday junction DNA helicase RuvB [Alkaliphilus metalliredigens QYMF] Length = 336 Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 172/308 (55%), Positives = 226/308 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ LK+FIEAAK R E LDHVL GPPGLGKTTLA ++A E+ VN Sbjct: 25 LRPKFLVDYIGQNSVKERLKIFIEAAKQRQEPLDHVLLYGPPGLGKTTLANIIANEMNVN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I + GDLAA+LTNL DVLFIDEIHRL+ VEE+LYPAMEDF LD+++G+G Sbjct: 85 IKITSGPAIERPGDLAAILTNLAANDVLFIDEIHRLNRTVEEVLYPAMEDFALDIIIGKG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++++LS+FTLI ATTR G L++PL+DRFG+ +L Y + L IV+R A++ Sbjct: 145 PSARSIRLDLSQFTLIGATTRAGQLSSPLRDRFGVICKLELYNNKQLTAIVKRSARILDA 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DE A EIA RSRGTPRIA RLLRRVRD+A+V IT+ +A+ AL+ L +D +G D Sbjct: 205 YIDDEGATEIASRSRGTPRIANRLLRRVRDYAQVKSDGRITKRVAEEALILLEVDSLGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D + + + NF GGPVG++T++A E R+ IED+ EPY++Q GFI RTPRGR++M Sbjct: 265 NTDKKMIETMIYNFNGGPVGLDTLAATTGEERNTIEDVYEPYLLQMGFINRTPRGRIVMQ 324 Query: 322 IAWQHLGI 329 A++H I Sbjct: 325 KAYEHFNI 332 >gi|94676565|ref|YP_588761.1| Holliday junction DNA helicase B [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|122988117|sp|Q1LTF3|RUVB_BAUCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|94219715|gb|ABF13874.1| Holliday junction DNA helicase RuvB [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 335 Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 175/307 (57%), Positives = 230/307 (74%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ L ++ GQ +K+FI+AAK R +ALDHVL GPPGLGKTTLA ++A E+ + Sbjct: 23 RPKKLVDYIGQTNVREQMKIFIQAAKMRGDALDHVLLFGPPGLGKTTLANIIANEMEGSL 82 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142 RSTSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS ++EEILYPAMED++LD+++GEGP Sbjct: 83 RSTSGPVLEKAGDLAAILTNLEPHDVLFIDEIHRLSPVIEEILYPAMEDYKLDIIIGEGP 142 Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202 +ARS+KI + FTL+ ATTR+G +T+PL+DRFGI RL FY +DL+ I+ R A L+ Sbjct: 143 AARSIKIQIPPFTLVGATTRIGSITSPLRDRFGIVQRLEFYPTKDLQNIISRSAANLSLS 202 Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262 +TD EIA R+RGTPRIA RLLRRVRDFAEV A IT +A AL L +D GF+ Sbjct: 203 ITDGGLSEIAKRARGTPRIALRLLRRVRDFAEVRAAGKITNNVAMNALNMLNVDTAGFNF 262 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322 +D + L +I F GGPVG++ ++A + E R+ IED++EP++IQQGF+QRTPRGR+ Sbjct: 263 MDRQLLLVIINKFLGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFLQRTPRGRIATAE 322 Query: 323 AWQHLGI 329 A++H + Sbjct: 323 AYRHFSL 329 >gi|94264075|ref|ZP_01287874.1| Holliday junction DNA helicase RuvB [delta proteobacterium MLMS-1] gi|93455491|gb|EAT05681.1| Holliday junction DNA helicase RuvB [delta proteobacterium MLMS-1] Length = 352 Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 185/328 (56%), Positives = 239/328 (72%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M E L+S + +D+ + LRPR LE + GQ + NL++ I AAK R EALDH LF Sbjct: 1 MNQEERLVSPVILDDDSPDADLRPRRLEYYIGQEQLKENLEIAIAAAKGRGEALDHTLFH 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 G PGLGKTTLA V+A E+G R TSGPVI K GDLAA+LT+L++ DVLFIDEIHRL+ + Sbjct: 61 GFPGLGKTTLAYVIANEMGAAIRVTSGPVIEKPGDLAAILTSLQEGDVLFIDEIHRLNHV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMED++LDL++G+GP ARSVK++L RFTL+ ATTR GLLT PL+DRFG+ +RL Sbjct: 121 VEEILYPAMEDYELDLVIGQGPGARSVKMSLPRFTLVGATTRTGLLTPPLRDRFGLALRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FY E+L IV R A L G+ + D A EI RSRGTPRIA RLLRR+RDFAEV Sbjct: 181 DFYSPEELVAIVHRSAGLLGVPLDDAGALEIGRRSRGTPRIANRLLRRLRDFAEVRGQGR 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT E+ADAAL +D++GFD++D R L + F GGP+G+ET++ + E ++ +ED+ Sbjct: 241 ITAEVADAALNMQGVDQLGFDEMDRRILLALIDRFQGGPIGLETLATMVCEEKNTLEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EP++IQ GF+ RTPRGR+ A+ H G Sbjct: 301 EPFLIQAGFLIRTPRGRMATRAAYLHFG 328 >gi|126642623|ref|YP_001085607.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii ATCC 17978] Length = 297 Score = 362 bits (929), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 174/294 (59%), Positives = 223/294 (75%) Query: 40 LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99 +++FI AA+ R EALDH L GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+ Sbjct: 1 MEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAM 60 Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 LTNLE+ DVLFIDEIHRLS ++EEILYPAMED+QLD+M+GEGP+ARS+K++L FTL+AA Sbjct: 61 LTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAA 120 Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219 TTR GLLT+PL+DRFGI RL FY +EDL IV R A L + +T E A E+A RSRGTP Sbjct: 121 TTRAGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTP 180 Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279 RIA RLLRRVRD+A+V + E+A AL L +DK G D LD RYL+M+ F GGP Sbjct: 181 RIANRLLRRVRDYAQVKGTGEVNHEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGP 240 Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 G+E ++A ++E +ED+IEPY+IQQG++ RT RGR+ ++ G+ P Sbjct: 241 AGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQSYLQFGMTPPE 294 >gi|325286769|ref|YP_004262559.1| Holliday junction ATP-dependent DNA helicase ruvB [Cellulophaga lytica DSM 7489] gi|324322223|gb|ADY29688.1| Holliday junction ATP-dependent DNA helicase ruvB [Cellulophaga lytica DSM 7489] Length = 340 Score = 362 bits (929), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 185/321 (57%), Positives = 230/321 (71%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 S N S E+ DI LRP + ++F GQ + NLKVF+EAA R EALDH LF GPPGLGK Sbjct: 9 SENFSSEEFDIERALRPLSFDDFAGQDQVLENLKVFVEAANQRGEALDHTLFHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A ELGV + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS IVEE LY Sbjct: 69 TTLAHILANELGVGIKVTSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSPIVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+++D+M+ GP+ARSV+INL+ FTLI ATTR GLLT P++ RFGI RL +Y E Sbjct: 129 AMEDYKIDIMIESGPNARSVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYTTEL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TI +R A + + + EAA EIA RSRGTPRI LLRRVRDFA++ I EI+ Sbjct: 189 LSTIAERSADILNVPIDLEAAIEIAGRSRGTPRICNALLRRVRDFAQIKGNGKIDIEISR 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 L L +D G D++D + LT I F GGPVGI T++ +SE + IE++ EP++IQQ Sbjct: 249 FGLNALNVDAHGLDEMDNKILTTIIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQ 308 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 GFI RTPRGR + +A++HLG Sbjct: 309 GFIMRTPRGREVTELAYKHLG 329 >gi|332519996|ref|ZP_08396460.1| Holliday junction DNA helicase RuvB [Lacinutrix algicola 5H-3-7-4] gi|332044555|gb|EGI80749.1| Holliday junction DNA helicase RuvB [Lacinutrix algicola 5H-3-7-4] Length = 340 Score = 362 bits (929), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 181/321 (56%), Positives = 234/321 (72%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 + N S E+ DI LRP + ++FTGQ NL+VF++AA R EALDH LF GPPGLGK Sbjct: 9 NENFSPEEFDIEKTLRPLSFDDFTGQDNVLENLQVFVQAANQRDEALDHTLFHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A EL V + TSGPV+ K GDLA LLTNL+DRDVLFIDEIHRLS IVEE LY Sbjct: 69 TTLANILANELNVGIKITSGPVLDKPGDLAGLLTNLDDRDVLFIDEIHRLSPIVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMEDF++D+M+ GP+AR+V+INL+ FTL+ ATTR GLLT P++ RFGI RL +Y + Sbjct: 129 AMEDFKIDIMIESGPNARTVQINLNPFTLVGATTRSGLLTAPMRARFGIQSRLQYYSTDL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TI+QR A++ + ++ EAA EIA RSRGTPRIA LLRRVRDFA++ +I IA Sbjct: 189 LSTIIQRSAQILNVPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGSIDIAIAK 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 +L L +D G D++D + L+ I F GGPVGI TI+ +SE + +E++ EP++IQQ Sbjct: 249 FSLEALNVDAYGLDEMDNKILSTIIDKFKGGPVGITTIATAVSESTETVEEVYEPFLIQQ 308 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 GFI RTPRGR + +A++HLG Sbjct: 309 GFIMRTPRGREVTALAYEHLG 329 >gi|150026163|ref|YP_001296989.1| Holliday junction DNA helicase B [Flavobacterium psychrophilum JIP02/86] gi|166231492|sp|A6H1G3|RUVB_FLAPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|149772704|emb|CAL44187.1| Holliday junction DNA helicase RuvB [Flavobacterium psychrophilum JIP02/86] Length = 340 Score = 362 bits (929), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 179/307 (58%), Positives = 227/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + ++FTGQ + NLK+F++AA R EALDH LF GPPGLGKTTLA ++A ELGV Sbjct: 23 LRPLSFDDFTGQEQVLENLKIFVQAANLRGEALDHTLFHGPPGLGKTTLANILANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY AMEDF++D+M+ G Sbjct: 83 IKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYSAMEDFKIDIMIESG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+INLS FTL+ ATTR GLLT P++ RFGI RL +Y E L TIVQR + + + Sbjct: 143 PNARSVQINLSPFTLVGATTRSGLLTAPMRARFGIQSRLQYYNAELLTTIVQRSSSILKM 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA EIA RSRGTPRIA +LRRVRDFA++ +I EIA AL L +D G D Sbjct: 203 PITMEAAIEIAGRSRGTPRIANAMLRRVRDFAQIKGNGSIDIEIAKFALNALHVDAHGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ T++ +SE + IE++ EP++IQ+GFI RTPRGR + Sbjct: 263 EMDNKILNTIIDKFKGGPVGLSTLATAVSESSETIEEVYEPFLIQEGFIMRTPRGREVTE 322 Query: 322 IAWQHLG 328 A++HLG Sbjct: 323 KAYKHLG 329 >gi|310779513|ref|YP_003967846.1| Holliday junction DNA helicase subunit RuvB [Ilyobacter polytropus DSM 2926] gi|309748836|gb|ADO83498.1| Holliday junction DNA helicase subunit RuvB [Ilyobacter polytropus DSM 2926] Length = 333 Score = 362 bits (929), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 181/329 (55%), Positives = 241/329 (73%), Gaps = 3/329 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MDR +LS + + DI LRP+ +E+ GQ + +FIEAAK R EA+DHVL Sbjct: 1 MDR--VLSAGEFENEVDIQKSLRPKRFDEYIGQDNLKQKMSIFIEAAKRRGEAVDHVLLY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+GVN + TSGPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+ Sbjct: 59 GPPGLGKTTLAGVIATEMGVNLKITSGPVLDKAGDLAAILTSLEENDILFIDEIHRLNTS 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMED +LD+++G+GPSARS++I L FTLI ATTR GLL++PL+DRFG+ R+ Sbjct: 119 VEEILYPAMEDRELDIIIGKGPSARSIRIELPNFTLIGATTRAGLLSSPLRDRFGVVHRM 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 ++Y+ E+L I+ RG + G+ V E A EIA RSRGTPRI+ RLL+RVRD+AE+ Sbjct: 179 DYYKSEELIKIILRGGSILGVDVRLEGAEEIAFRSRGTPRISNRLLKRVRDYAEIRGDGV 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T+ +A A+ L ID G D+LD L + N+GGGPVGIET+S L E R +E++ Sbjct: 239 VTKPLAKEAMSLLGIDSFGLDELDREILGAVIENYGGGPVGIETLSLVLGEDRKTLEEVY 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY+++ GFI+RT RGR++ P A++HL I Sbjct: 299 EPYLVKIGFIKRTHRGRVVTPKAYEHLNI 327 >gi|160934126|ref|ZP_02081513.1| hypothetical protein CLOLEP_02989 [Clostridium leptum DSM 753] gi|156866799|gb|EDO60171.1| hypothetical protein CLOLEP_02989 [Clostridium leptum DSM 753] Length = 350 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 190/319 (59%), Positives = 226/319 (70%), Gaps = 1/319 (0%) Query: 15 EDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 EDADI + LRPRTL E+ GQ +A NL VFIEAAK R E+LDHVL GPPGLGKTTLA + Sbjct: 19 EDADIENPLRPRTLSEYIGQEKAKENLSVFIEAAKLRHESLDHVLLYGPPGLGKTTLAGI 78 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A EL VN R TSGP I K GDLAALLTNL DVLFIDEIHRLS VEEILYPAMEDF Sbjct: 79 IANELNVNIRITSGPAIEKPGDLAALLTNLNSGDVLFIDEIHRLSRSVEEILYPAMEDFA 138 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D++ G+G A S + L +FTL+ ATTR G LT PL+DRFG+ +RL Y E+L TIV Sbjct: 139 IDIITGKGQMAASYHLPLPKFTLVGATTRAGQLTAPLRDRFGVVLRLEMYTPEELATIVS 198 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R AK+ G+ E A EIA RSRGTPRIA RLL+RVRDFA+V IT E A AL +L Sbjct: 199 RSAKILGIETNQEGALEIASRSRGTPRIANRLLKRVRDFAQVMSDGVITYETAKVALDKL 258 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 ID++G D D R L + R + GGPVG+ET++A + E IED+ EPY++Q GF+ RT Sbjct: 259 EIDELGLDGNDRRMLETLIRFYKGGPVGLETLAAAIGEEAVTIEDVYEPYLMQIGFLSRT 318 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR A+ HLG+ P Sbjct: 319 PRGRCATHAAYLHLGMTPP 337 >gi|296331681|ref|ZP_06874150.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675360|ref|YP_003867032.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus subtilis subsp. spizizenii str. W23] gi|296151276|gb|EFG92156.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413604|gb|ADM38723.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus subtilis subsp. spizizenii str. W23] Length = 334 Score = 362 bits (928), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 182/331 (54%), Positives = 234/331 (70%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD + S + E LRP+ L ++ GQ + NL+VFI+AAK R E LDHVL G Sbjct: 1 MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA +VA E+GV R+TSGP I + GDLAA+LT LE DVLFIDEIHRL + Sbjct: 61 PPGLGKTTLASIVANEMGVELRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSI 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTRVGLLT+PL+DRFG+ RL Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTSPLRDRFGVMSRLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y E+L IV R A + + + +A EIA RSRGTPR+A RLLRRVRDFA+V I Sbjct: 181 YYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T EI+ AL RL +D++G D +D + L + F GGPVG++TISA + E IED+ E Sbjct: 241 TEEISQDALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEEPHTIEDVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY++Q GFIQRTPRGR++ P + H ++ P Sbjct: 301 PYLLQIGFIQRTPRGRIVTPAVYHHFQMEAP 331 >gi|167759025|ref|ZP_02431152.1| hypothetical protein CLOSCI_01372 [Clostridium scindens ATCC 35704] gi|167663432|gb|EDS07562.1| hypothetical protein CLOSCI_01372 [Clostridium scindens ATCC 35704] Length = 335 Score = 362 bits (928), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 173/328 (52%), Positives = 243/328 (74%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M R + + N+ ++ + LRP+ LE++ GQ +A LK++IEAAKAR EALDHVLF G Sbjct: 1 MSRRIITTENLEEDIKIENHLRPQMLEDYIGQEKAKETLKIYIEAAKARGEALDHVLFYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ V Sbjct: 61 PPGLGKTTLAGIIANEMNVNIKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMED+ +D+M+G+G SARS++++L +FTL+ ATTR G+LT PL+DRFG+ R+ Sbjct: 121 EEVLYPAMEDYAIDIMIGKGASARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVNRME 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY + +LKTI+ R A++ + + + A +A RSRGTPR+A RLL+RVRDFA+V + I Sbjct: 181 FYTVGELKTIILRSARVLEVGIDERGAYALARRSRGTPRLANRLLKRVRDFAQVKYDGYI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T E+A+ AL L +DK G DQ D L ++ F GGPVG++T++A + E IED+ E Sbjct: 241 TEEVANYALDLLDVDKEGLDQTDRGLLLIMIEKFQGGPVGLDTLAAAIGEDAGTIEDVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 PY+++ GFIQRTPRGR++ A++HLGI Sbjct: 301 PYLLKNGFIQRTPRGRVVTDSAYRHLGI 328 >gi|157693177|ref|YP_001487639.1| Holliday junction DNA helicase RuvB [Bacillus pumilus SAFR-032] gi|167012667|sp|A8FFR2|RUVB_BACP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157681935|gb|ABV63079.1| crossover junction endoribonuclease subunit B [Bacillus pumilus SAFR-032] Length = 334 Score = 362 bits (928), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 182/333 (54%), Positives = 239/333 (71%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD + + + E A LRP+TL ++ GQ + NL VFIEAA+ R E LDHVL G Sbjct: 1 MDERLVSTEADNHESAIEQSLRPQTLSQYIGQQKVKDNLSVFIEAARMRQETLDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+ V R+TSGP I + GDLAA+LT+LE DVLFIDEIHRL + Sbjct: 61 PPGLGKTTLASIIANEMNVQLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLQRSI 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF LD+++G+G +ARSV+++L FTL+ ATTRVGLLT PL+DRFG+ RL Sbjct: 121 EEVLYPAMEDFCLDIVIGKGDTARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVHARLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +YE DL IV R A+L + + +A EIA RSRGTPR+A RLLRRVRDFA+V +I Sbjct: 181 YYEQRDLAHIVSRTAELFEIGIDLRSAEEIARRSRGTPRVANRLLRRVRDFAQVLGNHSI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T +IA+ AL RL +DK+G D +D + L + F GGPVG++TISA + E IED+ E Sbjct: 241 TEDIAEDALERLQVDKLGLDHIDHKLLLSMIEKFRGGPVGLDTISATIGEESHTIEDVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 PY++Q GF+QRTPRGR++ A++H +++P R Sbjct: 301 PYLLQIGFLQRTPRGRVVTREAYEHFQMEVPIR 333 >gi|152996212|ref|YP_001341047.1| Holliday junction DNA helicase RuvB [Marinomonas sp. MWYL1] gi|189046036|sp|A6VXD3|RUVB_MARMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|150837136|gb|ABR71112.1| Holliday junction DNA helicase RuvB [Marinomonas sp. MWYL1] Length = 337 Score = 362 bits (928), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 177/333 (53%), Positives = 237/333 (71%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++++ ++S + D + +RP+ L E+ GQ +++FI+AA+ R E LDH L Sbjct: 1 MIEQDRIISAELKGNDRQVDRAIRPQALAEYIGQPVVREQMEIFIQAARQRGEPLDHTLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++ E+G R+TSGPV+ +AGDLAALLTNL + D+LFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIIGNEMGAEVRTTSGPVLERAGDLAALLTNLNEGDILFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+QLD+M+GEGP+ARS+KI L FTL+ ATTR GLLT+PL+DRFGI R Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKIELPPFTLVGATTRAGLLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++E L TIV R A G+ + E+A RSRGTPRIA RLLRRVRD A+V+ Sbjct: 181 LEFYDVESLTTIVARSAGKMGVELDQSGCFEVARRSRGTPRIANRLLRRVRDVAQVSGEV 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 + +++A AL L++D GFD LD R L + F G PVG++++SA L E +D IED+ Sbjct: 241 LVGQKVAQRALDMLSVDSQGFDHLDRRMLLTMIEKFDGRPVGLDSVSAALGEDKDTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 IEP++IQQGFI RTPRGR + A++H +P Sbjct: 301 IEPFLIQQGFIIRTPRGRQVTKRAYEHFNYQLP 333 >gi|302380554|ref|ZP_07269019.1| Holliday junction DNA helicase RuvB [Finegoldia magna ACS-171-V-Col3] gi|303233656|ref|ZP_07320310.1| Holliday junction DNA helicase RuvB [Finegoldia magna BVS033A4] gi|302311497|gb|EFK93513.1| Holliday junction DNA helicase RuvB [Finegoldia magna ACS-171-V-Col3] gi|302495090|gb|EFL54842.1| Holliday junction DNA helicase RuvB [Finegoldia magna BVS033A4] Length = 335 Score = 362 bits (928), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 178/315 (56%), Positives = 229/315 (72%), Gaps = 1/315 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP+ + ++ GQ + L +FIEAAK R E LDH L GPPGLGKTTLA ++ Sbjct: 18 EDIDFNL-RPKWMSDYIGQDKVKKKLSIFIEAAKNRNEPLDHALLYGPPGLGKTTLAHII 76 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R TSGP I K DLA++LTNL+ DVLFIDEIHR++ VEEILYPAMED+ L Sbjct: 77 ANEMGVNLRVTSGPAIEKPSDLASILTNLQKDDVLFIDEIHRINRSVEEILYPAMEDYAL 136 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GPSARS++I+L +FTLI ATTR G LT PL+DRFG+ + L Y+IE LK IV R Sbjct: 137 DIIVGKGPSARSLRIDLEKFTLIGATTRSGQLTGPLRDRFGVLLNLELYDIESLKKIVTR 196 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + +E A EIA RSRGTPRIA RLL+RVRD+AEV TIT+EI++ L L Sbjct: 197 SAGVLGIGIDEEGAMEIARRSRGTPRIANRLLKRVRDYAEVRADGTITQEISNRGLNLLE 256 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +DK G D +D + + + NF GGPVG++TI+A E R IED+ EPY++Q GFI RT Sbjct: 257 VDKCGLDYVDRKIIMTMINNFDGGPVGVDTIAAATGEERITIEDVYEPYLLQIGFINRTS 316 Query: 315 RGRLLMPIAWQHLGI 329 RGR++ A++H I Sbjct: 317 RGRIVTDKAYKHFNI 331 >gi|258405865|ref|YP_003198607.1| Holliday junction DNA helicase RuvB [Desulfohalobium retbaense DSM 5692] gi|257798092|gb|ACV69029.1| Holliday junction DNA helicase RuvB [Desulfohalobium retbaense DSM 5692] Length = 322 Score = 362 bits (928), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 173/308 (56%), Positives = 234/308 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++EF GQ + +NL+VF+++A+ R +A+DH L G PGLGKTTLAQ++A E+GVN Sbjct: 13 VRPSRMDEFIGQDDLRANLQVFLQSARGRGKAMDHTLLFGQPGLGKTTLAQIIATEMGVN 72 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 STSGPV+ ++GDLAA+LTNL+ DVLF+DEIHR+ VEE+LYPA+EDF+LDL+VG+G Sbjct: 73 LVSTSGPVMERSGDLAAILTNLQRYDVLFVDEIHRMPASVEEVLYPALEDFKLDLVVGQG 132 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+VKI+L FTL+ ATTR+GLL++PL+DRFG+ RL +Y EDL IVQR A++ + Sbjct: 133 PGARTVKIDLEPFTLVGATTRMGLLSSPLRDRFGVMCRLEYYTSEDLARIVQRSAQIQAI 192 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A++ + A EI RSRGTPRIA RLLRRVRDFA V A+ I E A AAL RL +D++G D Sbjct: 193 AISPDGALEIGRRSRGTPRIANRLLRRVRDFAMVQGAEHIGTEEAAAALERLDVDQLGLD 252 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + FGGGPVG++T++ E +ED+ EPY+IQ GF++RTPRGR+L Sbjct: 253 MMDRKILQAMVEKFGGGPVGVKTLAVACCEEVRTLEDIYEPYLIQSGFLKRTPRGRVLTA 312 Query: 322 IAWQHLGI 329 A++HL I Sbjct: 313 KAYEHLKI 320 >gi|153955758|ref|YP_001396523.1| Holliday junction DNA helicase RuvB [Clostridium kluyveri DSM 555] gi|219856125|ref|YP_002473247.1| hypothetical protein CKR_2782 [Clostridium kluyveri NBRC 12016] gi|189046026|sp|A5N206|RUVB_CLOK5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767421|sp|B9E5Q8|RUVB_CLOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|146348616|gb|EDK35152.1| RuvB [Clostridium kluyveri DSM 555] gi|219569849|dbj|BAH07833.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 350 Score = 361 bits (927), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 177/306 (57%), Positives = 229/306 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L+E+ GQ + LK+FIEAAK R EALDHVLF GPPGLGKTTLA ++A E+G N Sbjct: 21 LRPKSLKEYIGQRKVKEKLKIFIEAAKNRKEALDHVLFYGPPGLGKTTLANIIALEMGGN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I +AGDLAA+LT L+DRDVLFIDEIHRL+ VEEILYPAMED+ LD+++G+G Sbjct: 81 LKITSGPAIERAGDLAAILTGLDDRDVLFIDEIHRLNRSVEEILYPAMEDYALDIVIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 S +S++++L RFTLI ATTRVGLLT PL+DRFG+ ++FY+ E+L IV R + + Sbjct: 141 ASTKSIRLDLPRFTLIGATTRVGLLTAPLRDRFGVLCPMDFYDQEELSEIVVRSCNILKI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EA+ EI RSRGTPRIA RLL+RVRD++EV TI + + AAL L +DK GFD Sbjct: 201 RIEPEASVEIGKRSRGTPRIANRLLKRVRDYSEVKGNGTIDLKTSKAALELLEVDKEGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I NF GGPVGIET++ + E D IED+ EPY++Q+GFI RTPRGR+ Sbjct: 261 SIDNKILRAIIDNFNGGPVGIETLAYFIGEELDTIEDVYEPYLLQKGFIIRTPRGRIASD 320 Query: 322 IAWQHL 327 A++H Sbjct: 321 SAYKHF 326 >gi|15895552|ref|NP_348901.1| Holliday junction DNA helicase RuvB [Clostridium acetobutylicum ATCC 824] gi|20140171|sp|Q97GT1|RUVB_CLOAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|15025289|gb|AAK80241.1|AE007729_8 Holliday junction specific DNA helicase, subunit ruvB [Clostridium acetobutylicum ATCC 824] gi|325509701|gb|ADZ21337.1| Holliday junction DNA helicase B [Clostridium acetobutylicum EA 2018] Length = 349 Score = 361 bits (927), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 177/328 (53%), Positives = 238/328 (72%), Gaps = 1/328 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD L S N+ ++ A+ +L RP+ L E+ GQ + + +FI AAK R EALDHVLF G Sbjct: 1 MDDRILTSVNLEEDSAEYNL-RPQKLNEYIGQSKVKEKMDIFIRAAKKRGEALDHVLFYG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A+E+G N + TSGP I +AGDLAA+LT L + DVLFIDEIHRL+ V Sbjct: 60 PPGLGKTTLANIIAKEMGGNLKVTSGPAIERAGDLAAILTGLSEYDVLFIDEIHRLNRSV 119 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMED+ LD+++G+G +A+S++++L +FTLI ATTRVGLLT PL+DRFG+ + Sbjct: 120 EEILYPAMEDYALDIIIGKGAAAKSIRLDLPKFTLIGATTRVGLLTAPLRDRFGVLCPME 179 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY E+LK I+ R + + + + ++AA EIAMRSRGTPRIA RLL+RVRD+A+V + Sbjct: 180 FYNDEELKEIIVRSSSILDIDIDEDAALEIAMRSRGTPRIANRLLKRVRDYADVKGRGIV 239 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 + A AL L +D GFD +D + + I NF GGPVGIET+S + E D IED+ E Sbjct: 240 NLDSAKKALNLLEVDDEGFDSIDNKIIQAIVNNFAGGPVGIETLSYFVGEEIDTIEDVYE 299 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 PY++Q+GFI RTPRGR+ A++HL + Sbjct: 300 PYLLQKGFIMRTPRGRMATKKAYEHLKV 327 >gi|257784696|ref|YP_003179913.1| Holliday junction DNA helicase RuvB [Atopobium parvulum DSM 20469] gi|257473203|gb|ACV51322.1| Holliday junction DNA helicase RuvB [Atopobium parvulum DSM 20469] Length = 355 Score = 361 bits (927), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 176/311 (56%), Positives = 234/311 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+E+ GQ SNL+V IEAAK+R E LDHV+F GPPGLGKTTLA V+A E+G Sbjct: 43 LRPKTLDEYLGQERVKSNLRVLIEAAKSRNEPLDHVIFSGPPGLGKTTLAGVLAGEMGSK 102 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +TSGP I +AGDLAA+LTNLE+ D+LF+DEIHRL+ VEEILYPAMEDF LD+++G+G Sbjct: 103 LHTTSGPAIERAGDLAAILTNLEEGDILFVDEIHRLNHQVEEILYPAMEDFFLDIVIGKG 162 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+++++ RFTL+AATTR GLLT PL+DRFGI RL++Y + +L+TIV R A + + Sbjct: 163 PAARSIRLDIPRFTLVAATTRTGLLTGPLRDRFGISYRLDYYTVSELQTIVMRSANILDV 222 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V ++ A EIA RSRGTPR+A RLL+RVRD+A+V TIT ++A AL ID++G D Sbjct: 223 EVDEQGAAEIASRSRGTPRLANRLLKRVRDYAQVKAEGTITWQVASEALSFFEIDELGLD 282 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D+R L + F G PVG+ TI++ +SE +ED+ EPY++QQG I RTP+GR Sbjct: 283 VMDVRVLRALCETFRGRPVGLTTIASAVSEDPSTLEDVYEPYLLQQGLIIRTPQGRQATH 342 Query: 322 IAWQHLGIDIP 332 A+ HL I +P Sbjct: 343 AAFDHLRIPVP 353 >gi|313888445|ref|ZP_07822112.1| Holliday junction DNA helicase RuvB [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845474|gb|EFR32868.1| Holliday junction DNA helicase RuvB [Peptoniphilus harei ACS-146-V-Sch2b] Length = 333 Score = 361 bits (927), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 177/329 (53%), Positives = 235/329 (71%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M++ L+ + DA LRP+ LEE+ GQ + NLK+FIEAAK R+E LDH L G Sbjct: 1 MEKNRLVEPELIDGDAREVSLRPKWLEEYIGQEKVVKNLKIFIEAAKNRSEPLDHTLLSG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+GVN + TSGP I K GDLA++LTNL + DVLFIDEIHRL+ V Sbjct: 61 PPGLGKTTLAGIIANEMGVNLKVTSGPAIEKQGDLASILTNLNNDDVLFIDEIHRLNKSV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMED LD+++G+GPSARS++++L+ FTLI ATTR G+LT+PL+DRFG+ ++L+ Sbjct: 121 EEILYPAMEDHALDIIIGKGPSARSIRLDLAPFTLIGATTRAGMLTSPLRDRFGVMLKLD 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 Y+ + L I+ R AK+ + + +E A EIA RSRGTPRIA RLL+RVRD+AEV I Sbjct: 181 LYDTKSLVEIIMRSAKILNVPIEEEGALEIARRSRGTPRIANRLLKRVRDYAEVKEGGVI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T ++A L L IDK G D +D R + + F G PVGI+ ISA + E + +ED+ E Sbjct: 241 TTKVAIKGLNLLEIDKFGLDNIDRRIILTMIEKFNGRPVGIDAISAAIGEDKGTVEDVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 PY++Q GFI RTPRGR+ A+ H G++ Sbjct: 301 PYLMQIGFIIRTPRGRMTTKRAYDHFGLE 329 >gi|254796930|ref|YP_003081767.1| holliday junction DNA helicase RuvB [Neorickettsia risticii str. Illinois] gi|254590179|gb|ACT69541.1| holliday junction DNA helicase RuvB [Neorickettsia risticii str. Illinois] Length = 331 Score = 361 bits (927), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 167/307 (54%), Positives = 235/307 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+++++F GQ NL+VFI++A+ R ++LDHVLF GPPGLGKTTLA +++ EL Sbjct: 17 LRPKSIKKFVGQKRVIENLQVFIDSAQKRNDSLDHVLFCGPPGLGKTTLAHIISNELESR 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +T+GP+++KAGD+AA+LTNL D+LFIDEIHRL VEE+LYPAMED+ LDL+VG+G Sbjct: 77 IHTTAGPLLSKAGDIAAILTNLHKNDILFIDEIHRLPSAVEEVLYPAMEDYHLDLIVGDG 136 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+S++INL++FTL+AATTRVG+L+NPL+DRFGI +RL+FY + +L ++Q+ A+ + Sbjct: 137 PAAKSIRINLAKFTLVAATTRVGMLSNPLRDRFGITLRLDFYTVNELLQLLQQAAERLSV 196 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A E+A RSRGTPRIA RLL+R+RDF EV+ IT E AD AL ++ +D+ G D Sbjct: 197 NIENGAMIELAKRSRGTPRIALRLLKRMRDFLEVSDFDVITPEFADLALNKMEVDQFGLD 256 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD Y+ IA N+ PVG++TI+A +SE D+IE+LIEPY+I+ GF+ RT RGR L Sbjct: 257 KLDYTYMHFIAENYSDNPVGVKTIAAAISEKEDSIEELIEPYLIKIGFLNRTQRGRRLTR 316 Query: 322 IAWQHLG 328 A +L Sbjct: 317 KALDYLS 323 >gi|311069259|ref|YP_003974182.1| Holliday junction DNA helicase RuvB [Bacillus atrophaeus 1942] gi|310869776|gb|ADP33251.1| Holliday junction DNA helicase RuvB [Bacillus atrophaeus 1942] Length = 334 Score = 361 bits (927), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 183/331 (55%), Positives = 235/331 (70%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD + S + E A LRP++L ++ GQ + NL+VFI+AAK R E LDHVL G Sbjct: 1 MDERLVSSEADNHESAIEQSLRPQSLVQYIGQKKVKENLRVFIDAAKMREETLDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA +VA E+GV R+TSGP I + GDLAA+LT LE DVLFIDEIHRL + Sbjct: 61 PPGLGKTTLASIVANEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSI 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTRVGLLT PL+DRFG+ RL Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSRLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y E+L IV R A L + + +A EIA RSRGTPR+A RLLRRVRDFA+V I Sbjct: 181 YYTQEELSDIVVRTADLFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T +IA AL RL +D++G D +D + L + F GGPVG++TISA + E IED+ E Sbjct: 241 TDDIAQDALERLQVDRLGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY++Q GF+QRTPRGR++ P + H ++ P Sbjct: 301 PYLLQIGFLQRTPRGRIVTPAVYHHFNMEAP 331 >gi|254282411|ref|ZP_04957379.1| Holliday junction DNA helicase RuvB [gamma proteobacterium NOR51-B] gi|219678614|gb|EED34963.1| Holliday junction DNA helicase RuvB [gamma proteobacterium NOR51-B] Length = 352 Score = 361 bits (927), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 185/335 (55%), Positives = 248/335 (74%), Gaps = 2/335 (0%) Query: 1 MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M++ + L++ N S E+A +RP+TL ++ GQ +++F+ AAK R E LDH L Sbjct: 1 MIETDRLIAANPEGSNEEAVDRAIRPKTLADYLGQRVVREQMEIFLSAAKGRGEPLDHTL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGD+AAL+TNLE DVLFIDEIHRLS Sbjct: 61 IFGPPGLGKTTLASIIAHEMGVSLKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLS 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 VEE+LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI Sbjct: 121 PYVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQ 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL FYE++DL IV R + +++ ++ A EIA R+RGTPRIA RLLRRVRD+AEV Sbjct: 181 RLEFYEVDDLTRIVLRSGTILSISLDEQGAREIARRARGTPRIANRLLRRVRDYAEVKAD 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 IT ++A AL L +D++G D LD R L M+ F GGPVGI++++A LSE R +ED Sbjct: 241 GAITADVAARALDMLNVDQLGLDHLDRRLLLMLIEKFDGGPVGIDSLAAALSEERGTLED 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++EPY+IQQG+I RTPRGR++ A+ H G+ P Sbjct: 301 VLEPYLIQQGYIIRTPRGRMVTRNAYAHFGLRPPE 335 >gi|308174475|ref|YP_003921180.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus amyloliquefaciens DSM 7] gi|307607339|emb|CBI43710.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus amyloliquefaciens DSM 7] gi|328554395|gb|AEB24887.1| Holliday junction DNA helicase RuvB [Bacillus amyloliquefaciens TA208] gi|328912800|gb|AEB64396.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus amyloliquefaciens LL3] Length = 334 Score = 361 bits (927), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 183/331 (55%), Positives = 235/331 (70%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD + S S E LRP+ L ++ GQ + NL+VFI+AAK R E LDHVL G Sbjct: 1 MDERLVSSEADSHESIIEQSLRPQNLAQYIGQQKVKENLRVFIDAAKMRQETLDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA +VA E+GV R+TSGP I + GDLAA+LT LE DVLFIDEIHRL+ + Sbjct: 61 PPGLGKTTLASIVANEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSI 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTRVGLLT PL+DRFG+ RL Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSRLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y E+L IV R A++ + + + A EIA RSRGTPR+A RLLRRVRDFA+V I Sbjct: 181 YYTQEELTDIVSRTAEVFEVEIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T EIA AL RL +D +G D +D + L + F GGPVG++TISA + E IED+ E Sbjct: 241 TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY++Q GF+QRTPRGR++ P ++H ++ P Sbjct: 301 PYLLQIGFLQRTPRGRVVTPAVYEHFRLEAP 331 >gi|160892585|ref|ZP_02073375.1| hypothetical protein CLOL250_00114 [Clostridium sp. L2-50] gi|156865626|gb|EDO59057.1| hypothetical protein CLOL250_00114 [Clostridium sp. L2-50] Length = 335 Score = 361 bits (926), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 172/309 (55%), Positives = 223/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + NLK+FIEAAK R E LDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 23 LRPKYLDEYIGQNKVKENLKIFIEAAKRRNEPLDHLLLYGPPGLGKTTLASIVANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K G+LAA+L NL + D+LFIDEIHRL+ VEE+LYPAMEDF +D+++G+G Sbjct: 83 IKITSGPAIEKPGELAAILNNLSENDILFIDEIHRLNSQVEEVLYPAMEDFAIDVVIGKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ARS++++L +FTLI ATTR G+LT PL+DRFG+ RL FY E+LK IV R + G+ Sbjct: 143 AGARSIRLDLPKFTLIGATTRAGMLTAPLRDRFGMVDRLEFYSPEELKQIVIRSGDVLGV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 D A EIA RSRGTPR+A RLL+R RDFA+V H I E+A AL +L +D MG D Sbjct: 203 ETDDAGALEIAKRSRGTPRLANRLLKRCRDFAQVCHNGCIDYEVAKTALDKLEVDSMGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D L + FGGGPVG++T++A + E IED+ EPY+I+ GFI RTPRGR++ Sbjct: 263 NTDRNILMTMIEKFGGGPVGLDTLAAAIGEDSGTIEDVYEPYLIKNGFINRTPRGRVVTE 322 Query: 322 IAWQHLGID 330 ++H G+D Sbjct: 323 RCYKHFGLD 331 >gi|86140751|ref|ZP_01059310.1| Holliday junction DNA helicase RuvB [Leeuwenhoekiella blandensis MED217] gi|85832693|gb|EAQ51142.1| Holliday junction DNA helicase RuvB [Leeuwenhoekiella blandensis MED217] Length = 340 Score = 361 bits (926), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 184/316 (58%), Positives = 230/316 (72%), Gaps = 1/316 (0%) Query: 13 SQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 S E+ DI LRP + ++FTGQ + NL++F++AA R EALDH LF GPPGLGKTTLA Sbjct: 13 SHEEYDIERALRPLSFDDFTGQEQVIENLEIFVQAANGRGEALDHTLFHGPPGLGKTTLA 72 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A ELGVN + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS IVEE LY AMED Sbjct: 73 NILANELGVNIKVTSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSPIVEEYLYSAMED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D+M+ GP+AR+V+I L+ FTLI ATTR GLLT P++ RFGI RL +Y E L TI Sbjct: 133 FKIDIMIESGPNARTVQITLNPFTLIGATTRSGLLTAPMRARFGISSRLQYYNTELLTTI 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 VQR A++ + + EAA EIA RSRGTPRIA LLRRVRDFA++ TI EIA +L Sbjct: 193 VQRSAEILNVPIHMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGTIDIEIARFSLK 252 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L +D G D++D + L I F GGPVGI T++ +SE + IE++ EP++IQQGFI Sbjct: 253 ALNVDAHGLDEMDNKILATIIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQGFIV 312 Query: 312 RTPRGRLLMPIAWQHL 327 RTPRGR + A+ HL Sbjct: 313 RTPRGREVTEAAYTHL 328 >gi|189501748|ref|YP_001957465.1| Holliday junction DNA helicase RuvB [Candidatus Amoebophilus asiaticus 5a2] gi|238692303|sp|B3ER84|RUVB_AMOA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189497189|gb|ACE05736.1| hypothetical protein Aasi_0299 [Candidatus Amoebophilus asiaticus 5a2] Length = 342 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 177/313 (56%), Positives = 229/313 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +FTGQ + +NLK+F++AAK R E LDHVL GPPGLGKTTLA ++A ELG N Sbjct: 24 LRPHVFADFTGQEKIVANLKIFVQAAKERKEPLDHVLLHGPPGLGKTTLAHIIANELGAN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ K GDLA LLTNL DVLFIDEIHRL+ IVEE LY AMEDF++D+M+ G Sbjct: 84 IRITSGPVLDKPGDLAGLLTNLGPYDVLFIDEIHRLNPIVEEYLYTAMEDFKIDIMLDSG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV++NL+ FTLI ATTR GLLT+PL+ RFGI RL +Y++ L IV+R +++ + Sbjct: 144 PSARSVQLNLNPFTLIGATTRSGLLTSPLRARFGINTRLAYYDVTLLTQIVKRSSQILNV 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + AA E+A RSRGTPRIA LLRR RDFA++ + TIT++IA AL L +D+ G D Sbjct: 204 PIEESAAYELARRSRGTPRIANTLLRRTRDFAQITGSGTITQQIAQMALKALDVDEDGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L+ I F GGPVGI TI+ SE + IE++ EP++IQ+G++ RTPRGR P Sbjct: 264 EMDNRILSTIIEKFHGGPVGISTIATACSEESETIEEVYEPFLIQEGYLHRTPRGREATP 323 Query: 322 IAWQHLGIDIPHR 334 A++HL + P R Sbjct: 324 KAYKHLKLAPPQR 336 >gi|154686914|ref|YP_001422075.1| Holliday junction DNA helicase RuvB [Bacillus amyloliquefaciens FZB42] gi|166231462|sp|A7Z768|RUVB_BACA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|154352765|gb|ABS74844.1| RuvB [Bacillus amyloliquefaciens FZB42] Length = 334 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 184/333 (55%), Positives = 234/333 (70%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD + S S E LRP+ L ++ GQ + NL+VFI+AAK R E LDHVL G Sbjct: 1 MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA +VA E+GV R+TSGP I + GDLAA+LT LE DVLFIDEIHRL+ + Sbjct: 61 PPGLGKTTLASIVANEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSI 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTRVGLLT PL+DRFG+ RL Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSRLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y E+L IV R A + + + A EIA RSRGTPR+A RLLRRVRDFA+V I Sbjct: 181 YYTQEELTDIVSRTADVFEVDIEKAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T EIA AL RL +D +G D +D + L + F GGPVG++TISA + E IED+ E Sbjct: 241 TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 PY++Q GF+QRTPRGR++ P ++H ++ P R Sbjct: 301 PYLLQIGFLQRTPRGRVVTPAVYEHFRLEAPAR 333 >gi|225181938|ref|ZP_03735372.1| Holliday junction DNA helicase RuvB [Dethiobacter alkaliphilus AHT 1] gi|225167378|gb|EEG76195.1| Holliday junction DNA helicase RuvB [Dethiobacter alkaliphilus AHT 1] Length = 341 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 179/329 (54%), Positives = 243/329 (73%), Gaps = 1/329 (0%) Query: 2 MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD E ++S R+ + +D S LRPRTL E+ GQ + +NL+VFI+AA+ R ++LDHVL Sbjct: 1 MDEERIISSRSRTDDDWQDSSLRPRTLGEYIGQEKLKTNLRVFIDAARQRGDSLDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A ELGVN RSTSGP I + GDLAA+LTNL DVLFIDEIHRL Sbjct: 61 GPPGLGKTTLASIIAGELGVNLRSTSGPAIERPGDLAAILTNLAPYDVLFIDEIHRLHRT 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD+++G+GPSARS++++L FT+I ATTR G L++PL+DRFG+ RL Sbjct: 121 VEEVLYPAMEDFALDIIIGKGPSARSLRLDLPPFTMIGATTRAGALSSPLRDRFGVVSRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +L+ IV+R A + + + +E A IA SRGTPR+A RLL+RVRDFA++ T Sbjct: 181 EFYRDGELQEIVRRAAGILQVEIDEEGALAIAKSSRGTPRVANRLLKRVRDFAQIKADNT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT ++A A+ L +D +G D++D L + F GGPVG++T++A +SE + IED+ Sbjct: 241 ITGDVARLAMDMLEVDALGLDEVDRHLLRTMVEKFSGGPVGLDTLAAAISEETETIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QRTPRGR + +A +HLG+ Sbjct: 301 EPYLMQIGFLQRTPRGRCVTRLACEHLGL 329 >gi|261368083|ref|ZP_05980966.1| holliday junction DNA helicase RuvB [Subdoligranulum variabile DSM 15176] gi|282570073|gb|EFB75608.1| holliday junction DNA helicase RuvB [Subdoligranulum variabile DSM 15176] Length = 350 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 182/333 (54%), Positives = 240/333 (72%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 +D L+S + DA+ LRP+TL+++ GQ +A NL+V++ AA+ R E +DH+L G Sbjct: 7 VDPSRLVSPDALPADAEEISLRPKTLDDYVGQEKAKGNLRVYLRAAQQRGEPMDHILLYG 66 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA +VA+E+GV R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS V Sbjct: 67 PPGLGKTTLAGIVAQEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQV 126 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPA+ED+ LD+M+G+GPSA+S++INL RFTLI ATTR G LT PL+DRFGI ++L Sbjct: 127 EEVLYPALEDYALDIMIGKGPSAQSIRINLPRFTLIGATTRAGQLTGPLRDRFGILLKLE 186 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 Y ++L I+ R A + G+ +T+E A E+A SRGTPRIA RLL+RVRDFA V TI Sbjct: 187 PYSPKELAQIITRSAGILGIPITEEGALELARCSRGTPRIANRLLKRVRDFATVQGDGTI 246 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 E A A + ID+MG D+LD L I +GGGPVG+ET++A L E +EDL E Sbjct: 247 DEETAVEARKWMDIDEMGLDELDRSLLRAIIEMYGGGPVGLETLAAALGEESVTLEDLCE 306 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 PY++Q G + RTPRGR + +A++HL + +P R Sbjct: 307 PYLMQMGMLTRTPRGRCVTRLAYEHLHMAVPRR 339 >gi|270307967|ref|YP_003330025.1| Holliday junction DNA helicase subunit [Dehalococcoides sp. VS] gi|270153859|gb|ACZ61697.1| Holliday junction DNA helicase subunit [Dehalococcoides sp. VS] Length = 349 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 182/331 (54%), Positives = 239/331 (72%), Gaps = 1/331 (0%) Query: 3 DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++E L+S ++ +DA + + LRPR L +F GQ NL V I+AAK R EALDHVL G Sbjct: 4 EKERLISGKLAADDAKLDTSLRPRCLPDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYG 63 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL+ D+LFIDEIHRLS V Sbjct: 64 PPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHRLSRNV 123 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMED+ LD+MVG+GP ARS+++ L FTLI ATTR +L+ PL+DRFG RL+ Sbjct: 124 EEVLYPAMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLD 183 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY+ E + IV+R A++ G+ + +IA RSRGTPR+A RLLRRVRD+A+V I Sbjct: 184 FYDEEAIYDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRDYAQVKGNGLI 243 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T +IA +L L +DK+G D++D + L I FGGGPVG+ETI+A +SE D I D+ E Sbjct: 244 TGDIAAESLACLEVDKLGLDEIDHKVLKTIIHKFGGGPVGLETIAAAISEEADTIMDVYE 303 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY++Q GF++RTPRGR +A+QHL I P Sbjct: 304 PYLLQLGFLERTPRGRQATRLAYQHLSIPYP 334 >gi|256420297|ref|YP_003120950.1| Holliday junction DNA helicase RuvB [Chitinophaga pinensis DSM 2588] gi|256035205|gb|ACU58749.1| Holliday junction DNA helicase RuvB [Chitinophaga pinensis DSM 2588] Length = 355 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 179/307 (58%), Positives = 226/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR + +F+GQ + NLK+FI+AAK R EALDH+LF GPPGLGKTTL+++VA E+GVN Sbjct: 36 IRPREIVDFSGQDQIIENLKIFIKAAKMRGEALDHILFHGPPGLGKTTLSRIVANEMGVN 95 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI K GDLA LLTNLED+DVLFIDEIHRLS +VEE LY AMED+++D+M+ G Sbjct: 96 IKETSGPVIEKPGDLAGLLTNLEDKDVLFIDEIHRLSTVVEEYLYSAMEDYRIDIMIDTG 155 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I L FTLI ATTR GLLT PL RFGI RL +Y L+ I+ R + + Sbjct: 156 PSARSIQITLHPFTLIGATTRSGLLTAPLLSRFGIKSRLEYYNAATLQKIIWRASDILHT 215 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T +AA EIA RSRGTPRIA LLRRVRDFA+V TI EIA +L L +D+ G D Sbjct: 216 KITSDAAMEIARRSRGTPRIANGLLRRVRDFAQVMGNGTIDLEIAQFSLKALNVDEYGLD 275 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L +I NF GGPVGI TI+ + E +E++ EP++IQ+GFI+RTPRGR + Sbjct: 276 EMDNRILQVIIENFKGGPVGITTIATAVGEESGTLEEVYEPFLIQEGFIKRTPRGREVTE 335 Query: 322 IAWQHLG 328 A+ HLG Sbjct: 336 KAYIHLG 342 >gi|153814821|ref|ZP_01967489.1| hypothetical protein RUMTOR_01036 [Ruminococcus torques ATCC 27756] gi|317500340|ref|ZP_07958565.1| Holliday junction DNA helicase RuvB [Lachnospiraceae bacterium 8_1_57FAA] gi|331089651|ref|ZP_08338550.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae bacterium 3_1_46FAA] gi|145847852|gb|EDK24770.1| hypothetical protein RUMTOR_01036 [Ruminococcus torques ATCC 27756] gi|316898281|gb|EFV20327.1| Holliday junction DNA helicase RuvB [Lachnospiraceae bacterium 8_1_57FAA] gi|330405019|gb|EGG84557.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae bacterium 3_1_46FAA] Length = 334 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 169/309 (54%), Positives = 235/309 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L E+ GQ +A L ++IEAAKAR E LDHVLF GPPGLGKTTLA ++A E+GV+ Sbjct: 21 LRPQSLGEYIGQEKAKETLGIYIEAAKARGETLDHVLFYGPPGLGKTTLAGIIANEMGVH 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K G++AA+L L++ DVLF+DEIHRL+ VEE+LYPAMEDF +D+M+G+G Sbjct: 81 MKVTSGPAIEKPGEMAAILNGLQEGDVLFVDEIHRLNRQVEEVLYPAMEDFAIDIMIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +ARS+++NL +FTL+ ATTR G+LT PL+DRFG+ RL Y E+LKTI+ R A + + Sbjct: 141 SAARSIRLNLPKFTLVGATTRAGMLTAPLRDRFGVMHRLELYTPEELKTIILRSASVLNV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A E+A RSRGTPR+A RLL+RVRDFA+V + IT+++AD AL L +DK G D Sbjct: 201 EIEEDGALELARRSRGTPRLANRLLKRVRDFAQVKYDGKITKKVADYALDLLDVDKYGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D L + F GGPVG++T++A +SE +ED+ EPY+++ GFIQRTPRGR++ Sbjct: 261 HIDRTILLTMIEKFQGGPVGLDTLAAAISEDAGTLEDVYEPYLLKNGFIQRTPRGRIVTD 320 Query: 322 IAWQHLGID 330 +A++HLGI+ Sbjct: 321 LAYRHLGIE 329 >gi|58584510|ref|YP_198083.1| Holliday junction DNA helicase B [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|81311657|sp|Q5GT33|RUVB_WOLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|58418826|gb|AAW70841.1| Holliday junction resolvasome, helicase subunit, RuvB [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 326 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 178/308 (57%), Positives = 233/308 (75%), Gaps = 2/308 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L++F GQ + NLKVFI AAK R EALDHVL GPPGLGKTTLAQ++++EL V+ Sbjct: 19 IRPEQLDDFFGQKDLIQNLKVFINAAKTRTEALDHVLLHGPPGLGKTTLAQIISKELRVS 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR+TSGP++ KAGDLAA+LT L +DVLFIDEIHRL+ +EE+LY AMEDF LDL+VGEG Sbjct: 79 FRATSGPLLNKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDLLVGEG 138 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PS R+++I+L FTL+ ATTR+GLL+ PL+DRFGIP+RL FY E+L I++RG K+ Sbjct: 139 PSTRTLRIDLPPFTLVGATTRLGLLSAPLRDRFGIPLRLEFYSFEELVDIIKRGTKVFSA 198 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++A EIA R+RGTPRIA RLLRR+RDF EV K IT +IAD+AL +L IDKMG + Sbjct: 199 EIEEDAIQEIACRARGTPRIALRLLRRIRDFVEVKDNKKITHKIADSALSKLGIDKMGLN 258 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD+ YL + G VGI+TIS LSE IE+ +EPY+++ F++RTPRGR+L Sbjct: 259 KLDVDYLRFLFNT--SGSVGIDTISIALSEDSGNIEETVEPYLVKISFVKRTPRGRVLTD 316 Query: 322 IAWQHLGI 329 ++L + Sbjct: 317 QGKEYLSL 324 >gi|284048862|ref|YP_003399201.1| Holliday junction DNA helicase RuvB [Acidaminococcus fermentans DSM 20731] gi|283953083|gb|ADB47886.1| Holliday junction DNA helicase RuvB [Acidaminococcus fermentans DSM 20731] Length = 338 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 176/332 (53%), Positives = 239/332 (71%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D +++ + ++D LRPR L E+ GQ + N+++FI+AA R EALDHVL Sbjct: 1 MEDTNRVIAGHEQEQDGWQYSLRPRRLAEYIGQSKVKKNMEIFIQAALKRKEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A EL VN R TSGP + + GDLAA+LTNL D DVLFIDEIHRL Sbjct: 61 GPPGLGKTTLANIIANELNVNIRITSGPALERQGDLAAILTNLSDSDVLFIDEIHRLPKT 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILY AMED+ LD+++G+GP+ARSV+++L RFTLI ATTR+G + PL+DRFG+ L Sbjct: 121 VEEILYSAMEDYALDIIIGKGPAARSVRLDLPRFTLIGATTRMGSIAAPLRDRFGVICHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E+L+ IV+R A++ +++ E A EI RSRGTPR+A RLL+RVRDFAEV + Sbjct: 181 EFYTPEELQIIVERAAEILKVSIEPEGAYEIGRRSRGTPRVANRLLKRVRDFAEVGGHEV 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ITR++ A+ RL ID +G DQ D R L + ++FGG PVG++T++A L+E + +ED+ Sbjct: 241 ITRDVCRDAMKRLEIDDLGLDQNDRRLLHKLVKDFGGRPVGVDTLAASLNEETETLEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q G +QRTP+GR A+Q+LG+ P Sbjct: 301 EPYLMQLGMLQRTPKGRQATLAAYQYLGVPYP 332 >gi|255994148|ref|ZP_05427283.1| holliday junction DNA helicase RuvB [Eubacterium saphenum ATCC 49989] gi|255993816|gb|EEU03905.1| holliday junction DNA helicase RuvB [Eubacterium saphenum ATCC 49989] Length = 332 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 172/310 (55%), Positives = 231/310 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L+++ GQ + NL+VFI+AAK R+E+LDHVLF GP GLGKTTL+ ++A EL + Sbjct: 21 LRPKSLKDYIGQKDVIDNLEVFIKAAKKRSESLDHVLFFGPAGLGKTTLSCIIANELSAD 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDLAA+LTNL + DVLFIDEIHRL+ VEE+LY AMED+ +D+++G+G Sbjct: 81 IKITSGPTIEKAGDLAAILTNLTENDVLFIDEIHRLNRTVEEVLYSAMEDYAIDIIIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS+++++ +FTL+ ATTR G LT PL+DRFGI + N Y ++LK IV R A + G+ Sbjct: 141 PSARSIRLDIPKFTLVGATTRAGNLTAPLRDRFGIVSKFNLYSNDELKQIVNRSAGILGI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+AA EIA RSRGTPRIA R+L+RVRDF+EV+ + A AL L ID G + Sbjct: 201 KINDKAASEIAKRSRGTPRIANRILKRVRDFSEVSGKDEVDINDATKALDALGIDSAGLE 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L+ I F GGPVGI+TI+A + E R IED+ EPY++Q+GFI RTP+GR+ Sbjct: 261 DTDRRILSFIIDRFTGGPVGIDTIAASIGEERITIEDVYEPYLLQEGFIHRTPKGRVASE 320 Query: 322 IAWQHLGIDI 331 A++HLGI+I Sbjct: 321 KAYEHLGINI 330 >gi|169824512|ref|YP_001692123.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328] gi|167831317|dbj|BAG08233.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328] Length = 335 Score = 360 bits (924), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 177/315 (56%), Positives = 229/315 (72%), Gaps = 1/315 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED D +L RP+ + ++ GQ + L +FIEAAK R E LDH L GPPGLGKTTLA ++ Sbjct: 18 EDIDFNL-RPKWMSDYIGQDKVKKKLSIFIEAAKNRNEPLDHALLYGPPGLGKTTLAHII 76 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN R TSGP I K DLA++LTNL+ DVLFIDEIHR++ VEEILYPAMED+ L Sbjct: 77 ANEMGVNLRVTSGPAIEKPSDLASILTNLQKDDVLFIDEIHRINRSVEEILYPAMEDYAL 136 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GPSARS++I+L +FTLI ATTR G LT PL+DRFG+ + L Y+IE LK IV R Sbjct: 137 DIIVGKGPSARSLRIDLEKFTLIGATTRSGQLTGPLRDRFGVLLNLELYDIESLKKIVTR 196 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + ++ A EIA RSRGTPRIA RLL+RVRD+AEV TIT+EI++ L L Sbjct: 197 SAGVLGIGIDEQGAMEIARRSRGTPRIANRLLKRVRDYAEVRADGTITQEISNLGLNLLE 256 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +DK G D +D + + + NF GGPVG++TI+A E R IED+ EPY++Q GFI RT Sbjct: 257 VDKCGLDYVDRKIIMTMINNFDGGPVGVDTIAAATGEERITIEDVYEPYLLQIGFINRTS 316 Query: 315 RGRLLMPIAWQHLGI 329 RGR++ A++H I Sbjct: 317 RGRIVTDKAYKHFNI 331 >gi|312143983|ref|YP_003995429.1| Holliday junction DNA helicase RuvB [Halanaerobium sp. 'sapolanicus'] gi|311904634|gb|ADQ15075.1| Holliday junction DNA helicase RuvB [Halanaerobium sp. 'sapolanicus'] Length = 344 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 171/309 (55%), Positives = 234/309 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL E+ GQ ++ LK+FIEAA R EALDHV+ GPPGLGKTTLA ++A EL VN Sbjct: 23 LRPQTLAEYIGQSKSKEKLKIFIEAACNREEALDHVMLYGPPGLGKTTLAAIIANELNVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGP I + GDLA++LTNL+ +DVLFIDEIHRL+ +VEE+LYPAMED+ LD+++G+G Sbjct: 83 IHQTSGPAIERPGDLASILTNLQSKDVLFIDEIHRLNKMVEEVLYPAMEDYCLDIIIGKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV+++L+ FTL+ ATT+ G L++PL+DRFG+ RL FY ++L+ I+ R A++ + Sbjct: 143 PSARSVRLDLAPFTLVGATTKAGRLSSPLRDRFGVINRLEFYNKDELQEIILRSAEILNV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA RSRGTPRIA RLL+RVRDFA+V I +++ D+AL L ID++G D Sbjct: 203 DIESHGALEIARRSRGTPRIANRLLKRVRDFAQVKADGIINQKVVDSALKLLEIDELGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I FGGGPVG+ T++A +SE + IED+ EPY++Q GF++RTPRGR+ Sbjct: 263 RIDHKLLKTIILKFGGGPVGLNTLAASISEETETIEDVYEPYLLQLGFLERTPRGRVASL 322 Query: 322 IAWQHLGID 330 A+QHL I+ Sbjct: 323 KAYQHLKIN 331 >gi|163786540|ref|ZP_02180988.1| Holliday junction DNA helicase RuvB [Flavobacteriales bacterium ALC-1] gi|159878400|gb|EDP72456.1| Holliday junction DNA helicase RuvB [Flavobacteriales bacterium ALC-1] Length = 340 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 184/319 (57%), Positives = 232/319 (72%), Gaps = 1/319 (0%) Query: 11 NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N S E+ D+ LRP T ++FTGQ + NL VF++AA R EALDH LF GPPGLGKTT Sbjct: 11 NFSPEELDVEKKLRPLTFDDFTGQDQVLENLLVFVQAANLRDEALDHTLFHGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA +++ EL V + TSGPV+ K GDLA LLTNLEDRDVLFIDEIHRLS IVEE LY AM Sbjct: 71 LAHILSNELEVGIKVTSGPVLDKPGDLAGLLTNLEDRDVLFIDEIHRLSPIVEEYLYSAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D+M+ GP+AR+V+INL+ FTL+ ATTR GLLT P++ RFGI RL +Y+ + L Sbjct: 131 EDYKIDIMIESGPNARTVQINLNPFTLVGATTRSGLLTAPMRARFGISSRLQYYKTDLLT 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 TIVQR A + + ++ EAA EIA RSRGTPRIA LLRRVRDFA++ I +IA A Sbjct: 191 TIVQRSASILDVPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGDGKIDIKIAKFA 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D G D++D + LT I F GGPVGI TI+ +SE + IE++ EP++IQQGF Sbjct: 251 LEALNVDAHGLDEMDNKILTTIIDKFKGGPVGISTIATAVSESTETIEEVYEPFLIQQGF 310 Query: 310 IQRTPRGRLLMPIAWQHLG 328 I RTPRGR + A++HLG Sbjct: 311 IMRTPRGREVTEQAYKHLG 329 >gi|50812277|ref|YP_054590.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp. subtilis str. 168] gi|221310712|ref|ZP_03592559.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp. subtilis str. 168] gi|221315036|ref|ZP_03596841.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319957|ref|ZP_03601251.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp. subtilis str. JH642] gi|221324238|ref|ZP_03605532.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp. subtilis str. SMY] gi|321312302|ref|YP_004204589.1| Holliday junction DNA helicase RuvB [Bacillus subtilis BSn5] gi|3122842|sp|O32055|RUVB_BACSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|6977806|emb|CAB75331.1| RuvB protein [Bacillus subtilis subsp. subtilis str. 168] gi|32468806|emb|CAB14733.2| Holliday junction DNA helicase, ATP-dependent component [Bacillus subtilis subsp. subtilis str. 168] gi|291485184|dbj|BAI86259.1| Holliday junction DNA helicase B [Bacillus subtilis subsp. natto BEST195] gi|320018576|gb|ADV93562.1| Holliday junction DNA helicase RuvB [Bacillus subtilis BSn5] Length = 334 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 181/331 (54%), Positives = 233/331 (70%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD + S + E LRP+ L ++ GQ + NL+VFI+AAK R E LDHVL G Sbjct: 1 MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA +VA E+GV R+TSGP I + GDLAA+LT LE DVLFIDEIHRL + Sbjct: 61 PPGLGKTTLASIVANEMGVELRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSI 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTRVGLLT PL+DRFG+ RL Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVMSRLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y E+L IV R A + + + +A EIA RSRGTPR+A RLLRRVRDFA+V I Sbjct: 181 YYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T +I+ AL RL +D++G D +D + L + F GGPVG++TISA + E IED+ E Sbjct: 241 TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY++Q GFIQRTPRGR++ P + H ++ P Sbjct: 301 PYLLQIGFIQRTPRGRIVTPAVYHHFQMEAP 331 >gi|218133571|ref|ZP_03462375.1| hypothetical protein BACPEC_01438 [Bacteroides pectinophilus ATCC 43243] gi|217990946|gb|EEC56952.1| hypothetical protein BACPEC_01438 [Bacteroides pectinophilus ATCC 43243] Length = 332 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 175/329 (53%), Positives = 239/329 (72%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M+R + + + +++ + LRP LEE+ GQ SNLKV+IEAA+ R + LDHVL G Sbjct: 1 MERRVISTESFVEDEKLENSLRPMKLEEYIGQERVKSNLKVYIEAARNRKDVLDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA +++ E+G N + TSGP I K G++AA+L NL + DVLF+DEIHRL+ V Sbjct: 61 PPGLGKTTLASIISNEMGTNLKVTSGPAIEKPGEMAAILNNLNEGDVLFVDEIHRLNRQV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF +D+++G+G SARS++++L FTL+ ATTR GLLT PL+DRFG+ L Sbjct: 121 EEVLYPAMEDFAIDIVIGKGASARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVVSHLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY E+L+ I++R A++ G+ + +E A E+A RSRGTPR+A R+L+RVRDFA+V + I Sbjct: 181 FYTTEELERIIRRSAQVLGVEIDEEGAHELARRSRGTPRLANRMLKRVRDFAQVRYDGRI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 TRE+AD AL + +DK G D+ D L+ I FGGGPVGIETI+A + E +ED+ E Sbjct: 241 TREVADYALNLMDVDKDGLDRNDRLILSTIINKFGGGPVGIETIAAAVGEDAGTLEDVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 PY++Q GFI RTPRGR+ A+ LGID Sbjct: 301 PYLVQNGFINRTPRGRMASVHAYDCLGID 329 >gi|255526660|ref|ZP_05393565.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans P7] gi|296187165|ref|ZP_06855562.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans P7] gi|255509640|gb|EET85975.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans P7] gi|296048200|gb|EFG87637.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans P7] Length = 348 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 173/307 (56%), Positives = 231/307 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ + E+ GQ + LK+FIEAAK R EALDHVL GPPGLGKTTLA ++A E+G N Sbjct: 23 LRPKRINEYIGQKKVKEKLKIFIEAAKKRKEALDHVLLYGPPGLGKTTLANIIATEMGGN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I +AGDLAA+LT+L D DVLFIDEIHRLS VEEILYPAMED+ LD+++G+G Sbjct: 83 LKVTSGPAIERAGDLAAILTSLNDYDVLFIDEIHRLSRNVEEILYPAMEDYALDIVIGKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+ + FYE ++LK I+ R A++ G+ Sbjct: 143 AAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVMCPMEFYENDELKEIIVRSAQILGV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + AA EI RSRGTPRIA RLL+RVRD+++V + E+ AAL L +D+ GFD Sbjct: 203 KIEENAALEIGSRSRGTPRIANRLLKRVRDYSDVKGNGLVDLEVTKAALELLDVDEEGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + LT I NF GGPVG+ET++ + E D I+D+ EPY++Q+GFI RTPRGR+ Sbjct: 263 SIDNKILTAIIDNFKGGPVGLETLAYFIGEELDTIQDVYEPYLLQKGFIIRTPRGRVASD 322 Query: 322 IAWQHLG 328 A++HL Sbjct: 323 SAYKHLN 329 >gi|154482943|ref|ZP_02025391.1| hypothetical protein EUBVEN_00641 [Eubacterium ventriosum ATCC 27560] gi|149736227|gb|EDM52113.1| hypothetical protein EUBVEN_00641 [Eubacterium ventriosum ATCC 27560] Length = 333 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 167/308 (54%), Positives = 234/308 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L+++ GQ +A +NLK+FIEAAK+R E LDHVLF GPPGLGKTTLA ++A E+GV+ Sbjct: 21 LRPESLDQYVGQSKAKNNLKIFIEAAKSRNEPLDHVLFYGPPGLGKTTLATIIAHEMGVH 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K G++AA+L NL + D+LFIDEIHRL+ VEE+LYPAMED+ +D+M+G+G Sbjct: 81 IKVTSGPAIEKPGEMAAILNNLAENDILFIDEIHRLNRQVEEVLYPAMEDYSIDIMIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ARS++++L +FTL+ ATTR GLLT PL+DRFG+ +L FY +++LK I+ R A L + Sbjct: 141 QGARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVINKLEFYTVDELKQIIIRSAGLLNV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A E+A RSRGTPR+A RLL+RVRDFA+V + IT ++A+ AL L +DK+G D Sbjct: 201 EIDEKGATELARRSRGTPRLANRLLKRVRDFAQVKYDGVITEDVANLALDLLEVDKLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D L + F GGPVG++T++A L E +ED+ EPY+IQ G +QRTPRGR+ Sbjct: 261 KGDRSILETMIDKFDGGPVGLDTLAAALGEDSGTLEDVYEPYLIQNGLLQRTPRGRIATR 320 Query: 322 IAWQHLGI 329 +A++HLG+ Sbjct: 321 LAYEHLGV 328 >gi|260891161|ref|ZP_05902424.1| holliday junction DNA helicase RuvB [Leptotrichia hofstadii F0254] gi|260859188|gb|EEX73688.1| holliday junction DNA helicase RuvB [Leptotrichia hofstadii F0254] Length = 336 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 175/329 (53%), Positives = 237/329 (72%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M+ E +L ED LRPRT +E+ GQ + + +FI+AAK R E+LDH+L G Sbjct: 1 MNEERILEPKELGEDNIQRSLRPRTFKEYIGQQDLKEKMNIFIKAAKMRNESLDHILLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+ V Sbjct: 61 PPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEIHRLNTSV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMED +LD+++G+GPSARS+++ L +FTLI ATTR G L+ PL+DRFG+ R+ Sbjct: 121 EEILYPAMEDGELDILIGKGPSARSIRVELPQFTLIGATTRAGQLSTPLRDRFGVTHRME 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y++EDLK I++RGA + ++ ++ EIA RSRGTPRIA RLL+R RDFA V + + Sbjct: 181 YYQLEDLKEIIRRGANILNISYDEDGITEIAKRSRGTPRIANRLLKRARDFALVEGSGIL 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 +E D L L +D G D+LD L I + GGPVGIET+S L E R IE++ E Sbjct: 241 EKESVDGILRLLGVDDNGLDELDRNILLSIINVYNGGPVGIETLSLLLGEDRRTIEEVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 PY+++ GFI+RTPRGR++ ++HLGI+ Sbjct: 301 PYLVKIGFIKRTPRGRVVTEFGYKHLGIE 329 >gi|108758416|ref|YP_633125.1| Holliday junction DNA helicase RuvB [Myxococcus xanthus DK 1622] gi|123074142|sp|Q1D2J8|RUVB_MYXXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|108462296|gb|ABF87481.1| Holliday junction DNA helicase RuvB [Myxococcus xanthus DK 1622] Length = 343 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 179/333 (53%), Positives = 237/333 (71%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M + LS +V ED + + LRPR+ +E+ GQ LKV+++AA++R EALDH LF Sbjct: 3 MARKSDTLSEDVLPEDVRLEASLRPRSFDEYVGQGPVVEKLKVYVQAARSRGEALDHCLF 62 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKT+LA ++A ELGV TSGP + + GDLA LLTNL+ RDVLFIDEIHRL+ Sbjct: 63 SGPPGLGKTSLAHIIANELGVGIHVTSGPALERKGDLAGLLTNLDARDVLFIDEIHRLNA 122 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE LYPAMEDF+LD+ + GP+AR++KI+L FTLI ATTR GLLT+PL+DRF I R Sbjct: 123 AVEEYLYPAMEDFRLDITIDTGPAARAMKIDLPPFTLIGATTRTGLLTSPLRDRFQIQER 182 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y+ + L++I+ R A++ G+ + +AA E+A RSRGTPRI RLLRR+RDFAEV Sbjct: 183 LEYYDAKALESILHRSARILGIPLDKDAAREVASRSRGTPRITNRLLRRLRDFAEVEGNG 242 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT E+A +L RL +D G D +D + L I FGGGPVG+ETI+A + E RD IED+ Sbjct: 243 RITLELAQKSLDRLGVDASGLDSMDRKILLTILDKFGGGPVGVETIAASVGEQRDTIEDV 302 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EP+++Q+GF+QRTPRGR+ +Q+ P Sbjct: 303 YEPFLMQEGFLQRTPRGRMATHRTYQYFKKQPP 335 >gi|229825021|ref|ZP_04451090.1| hypothetical protein GCWU000182_00371 [Abiotrophia defectiva ATCC 49176] gi|229790768|gb|EEP26882.1| hypothetical protein GCWU000182_00371 [Abiotrophia defectiva ATCC 49176] Length = 333 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 172/324 (53%), Positives = 239/324 (73%), Gaps = 1/324 (0%) Query: 7 LLSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S S+ED + LRP+ L ++ GQ +A +KV+IEAAK R E LDHVL GPPGL Sbjct: 9 IISTIASEEDIRNDDTLRPKFLTDYIGQKKAKEMMKVYIEAAKGRKEPLDHVLLYGPPGL 68 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+GV+ + TSGP I K GD+AA+L NL++ DVLF+DEIHRL+ VEE+L Sbjct: 69 GKTTLAGIIANEMGVHIKITSGPAIEKPGDVAAILNNLKEGDVLFVDEIHRLNRQVEEVL 128 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF +D+++G+G +++S+++ L +FTLI ATTR G+L+ PL+DRFG+ RL +Y + Sbjct: 129 YPAMEDFAIDVVIGKGATSKSIRLELPKFTLIGATTRAGMLSAPLRDRFGVVNRLEYYNL 188 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+TI+ R AK+ G+ + +EAA E+A RSRGTPR+A RLL+RVRDFAEV + +T+E+ Sbjct: 189 TELETIIMRSAKVLGVKIENEAALEMAKRSRGTPRLANRLLKRVRDFAEVKYDGKLTKEV 248 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A L L ID G D +D + LT + FGGGPVG+ETI+ + E IED+ EPY+I Sbjct: 249 AAEVLTLLNIDNYGLDHIDRQILTTMIEKFGGGPVGLETIAVSIGEDTATIEDVYEPYLI 308 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 Q GFI RT RGR++ +A+ HLG+ Sbjct: 309 QSGFIARTQRGRIVTDLAYTHLGL 332 >gi|187778349|ref|ZP_02994822.1| hypothetical protein CLOSPO_01941 [Clostridium sporogenes ATCC 15579] gi|187771974|gb|EDU35776.1| hypothetical protein CLOSPO_01941 [Clostridium sporogenes ATCC 15579] Length = 342 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 176/316 (55%), Positives = 232/316 (73%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ++D + LRP TL+E+ GQ + +NL +FI+AAK R E+LDHVLF GPPGLGKTTLA + Sbjct: 12 EDDKEQYSLRPTTLKEYIGQEKVKANLDIFIQAAKKRGESLDHVLFYGPPGLGKTTLANI 71 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+ N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+ +EEILYPAMED+ Sbjct: 72 IANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEEILYPAMEDYA 131 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+ + FY E+L IV Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFYTDEELMEIVV 191 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + + + EAA EI RSRGTPRIA RLL+RVRD+ +V H I + A AAL L Sbjct: 192 RSAAILNVNICKEAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDLQGAKAALDLL 251 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +DK G D++D + L I NF GGPVG+ET++ + E D IED+ EPY+IQ+GFI RT Sbjct: 252 EVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPYLIQKGFIMRT 311 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR+ A+ H G+ Sbjct: 312 PRGRVASEKAYNHFGV 327 >gi|196250112|ref|ZP_03148806.1| Holliday junction DNA helicase RuvB [Geobacillus sp. G11MC16] gi|196210296|gb|EDY05061.1| Holliday junction DNA helicase RuvB [Geobacillus sp. G11MC16] Length = 333 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 174/313 (55%), Positives = 231/313 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + NL+VFIEAAK R E LDHVL GPPGLGKTTLA ++A E+GV Sbjct: 21 LRPQYLHEYIGQDKVKENLQVFIEAAKLREETLDHVLLYGPPGLGKTTLAAIIANEMGVK 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP + + GDLAALLT+LE DVLFIDEIHRL VEE+LYPAMED+ LD+ VG+G Sbjct: 81 MRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRTVEEVLYPAMEDYCLDITVGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARS++++L FTL+ ATTR G L+ PL+DRFG+ RL +Y+++ L I++R A + + Sbjct: 141 PEARSLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYYQVDQLAQIIERAAAILHI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +EAA E+A R+RGTPRIA RLLRRVRDFA+V+ IT +A AL RL +D++G D Sbjct: 201 IINNEAALELARRARGTPRIANRLLRRVRDFAQVSGDGEITLPLAVEALERLQVDRLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+ET++A + E IE++ EPY++Q G +QRTPRGR+ P Sbjct: 261 HIDHKLLLAIIEKFAGGPVGLETMAAVIGEEAQTIEEVYEPYLLQIGLLQRTPRGRVATP 320 Query: 322 IAWQHLGIDIPHR 334 A+ HLG+++P R Sbjct: 321 AAYAHLGMEVPKR 333 >gi|150016409|ref|YP_001308663.1| Holliday junction DNA helicase RuvB [Clostridium beijerinckii NCIMB 8052] gi|189046025|sp|A6LTM7|RUVB_CLOB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|149902874|gb|ABR33707.1| Holliday junction DNA helicase RuvB [Clostridium beijerinckii NCIMB 8052] Length = 347 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 177/325 (54%), Positives = 241/325 (74%), Gaps = 1/325 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E +++++ QED + L LRP+ + E+ GQ + L +FI+AAK R EALDH L GPP Sbjct: 2 ERIVNQSEMQEDFNSELSLRPQKINEYIGQDKVKERLDIFIKAAKNRKEALDHTLLYGPP 61 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A+E+G + + TSGP I +AG+LAA+LT L+D DVLFIDEIHRL+ VEE Sbjct: 62 GLGKTTLANIIAKEMGGDLKITSGPAIERAGELAAILTTLKDYDVLFIDEIHRLNRNVEE 121 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 ILYPAMED+ LD+++G+G +A+S++I+L +FTLI ATTR+G+LT+PL+DRFG+ + +Y Sbjct: 122 ILYPAMEDYALDIVIGKGATAKSIRIDLPKFTLIGATTRIGMLTSPLRDRFGVLCAMEYY 181 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E+LK IV R A + G A+T+E A EIA RSRGTPRIA RLL+RVRD++EV K ++ Sbjct: 182 TDEELKEIVSRSALVFGCAITEEGALEIAKRSRGTPRIANRLLKRVRDYSEVKSNKLVSL 241 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 + A AL L +D GFD++D + L I NF GGPVGIET+S + E IED+ EPY Sbjct: 242 KEAREALELLEVDNQGFDKVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTIEDVYEPY 301 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328 ++Q+GFI RTPRGR+ A++HLG Sbjct: 302 LLQKGFIIRTPRGRIASDKAYEHLG 326 >gi|210615645|ref|ZP_03290691.1| hypothetical protein CLONEX_02909 [Clostridium nexile DSM 1787] gi|210150188|gb|EEA81197.1| hypothetical protein CLONEX_02909 [Clostridium nexile DSM 1787] Length = 335 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 170/317 (53%), Positives = 235/317 (74%), Gaps = 1/317 (0%) Query: 14 QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED I + LRP+ L ++ GQ +A LK++IEAAK+R E+LDHVLF GPPGLGKTTLA Sbjct: 14 EEDVKIENHLRPQLLSDYIGQEKAKQTLKIYIEAAKSRKESLDHVLFYGPPGLGKTTLAG 73 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+LYPAMED+ Sbjct: 74 IIANEMNVNLKVTSGPAIEKPGEIAAILNNLQEGDVLFVDEIHRLNRQVEEVLYPAMEDY 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+M+G+G SARS++++L +FTL+ ATTR G+LT PL+DRFG+ RL FY ++L+TI+ Sbjct: 134 AIDIMIGKGASARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVNRLEFYTEKELQTII 193 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A + G+ + A E+A RSRGTPR+A RLL+RVRDFA+V + IT E+A AL Sbjct: 194 MRSADVLGVEIEPNGALEMAKRSRGTPRLANRLLKRVRDFAQVKYDGVITEEVAMYALDL 253 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D+ G D +D L I F GGPVG++T++A + E IED+ EPY+++ GFIQR Sbjct: 254 LEVDRYGLDHIDRNILLTIIEKFQGGPVGLDTLAASIGEDSGTIEDVYEPYLLKNGFIQR 313 Query: 313 TPRGRLLMPIAWQHLGI 329 TP+GR++ A+ HLGI Sbjct: 314 TPKGRVVTEFAYHHLGI 330 >gi|153810825|ref|ZP_01963493.1| hypothetical protein RUMOBE_01209 [Ruminococcus obeum ATCC 29174] gi|149833221|gb|EDM88303.1| hypothetical protein RUMOBE_01209 [Ruminococcus obeum ATCC 29174] Length = 332 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 169/325 (52%), Positives = 243/325 (74%), Gaps = 1/325 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ +V++ED + LRP+TL+E+ GQ + LK++IEAAK R +ALDHVLF GPPGL Sbjct: 5 MITTDVTEEDLPLEGSLRPQTLDEYIGQEKTKKTLKIYIEAAKQRHDALDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+G + + TSGP I K G++AA+L NL++ D+LF+DEIHRL+ VEE+L Sbjct: 65 GKTTLSGIIANEMGTHMKVTSGPAIEKPGEMAAILNNLQEGDILFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF +D+M+G+G SARS++++L +FTL+ ATTR GLL+ PL+DRFG+ L FY Sbjct: 125 YPAMEDFAIDIMIGKGASARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVMHHLEFYNH 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++L+TIV R A++ G+ + + A EIA RSRGTPR+A RLL+RVRDFA+V + IT ++ Sbjct: 185 KELQTIVLRSAQVLGVEIDAKGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYDGRITYDV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +D+ G D++D R L + NF GGPVG+ET++A + E +ED+ EPY++ Sbjct: 245 ASFALDLLEVDQYGLDKIDRRILQTLIVNFQGGPVGLETLAAAIGEDAGTLEDVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330 Q GF+ RTPRGR +A++HLG + Sbjct: 305 QNGFLNRTPRGRTASSLAYEHLGFE 329 >gi|126663091|ref|ZP_01734089.1| Holliday junction DNA helicase B [Flavobacteria bacterium BAL38] gi|126624749|gb|EAZ95439.1| Holliday junction DNA helicase B [Flavobacteria bacterium BAL38] Length = 340 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 183/317 (57%), Positives = 229/317 (72%), Gaps = 1/317 (0%) Query: 13 SQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 S +D DI LRP + ++F GQ + NL VF++AA R EALDH LF GPPGLGKTTLA Sbjct: 13 SPQDIDIEKALRPLSFDDFAGQDQVLENLIVFVQAANLRNEALDHTLFHGPPGLGKTTLA 72 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A ELGV + TSGPV+ K GDLA LLTNLEDRDVLFIDEIHRLS IVEE LY AMED Sbjct: 73 NILANELGVGIKITSGPVLDKPGDLAGLLTNLEDRDVLFIDEIHRLSPIVEEYLYSAMED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D+M+ GP+AR+V+INL+ FTL+ ATTR GLLT P++ RFGI RL +Y E L TI Sbjct: 133 FKIDIMIESGPNARTVQINLNPFTLVGATTRSGLLTAPMRARFGIQSRLQYYNTELLTTI 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 VQR + + + +T EAA EIA RSRGTPRIA LLRRVRDFA++ I EIA AL Sbjct: 193 VQRSSSILKMPITMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGKIDIEIAKFALK 252 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L +D G D++D + L I F GGPVG+ T++ +SE + IE++ EP++IQ+GFI Sbjct: 253 ALNVDAHGLDEMDNKILLTIIEKFKGGPVGLSTLATAVSESGETIEEVYEPFLIQEGFIM 312 Query: 312 RTPRGRLLMPIAWQHLG 328 RTPRGR + A++HLG Sbjct: 313 RTPRGREVTEKAYKHLG 329 >gi|257125126|ref|YP_003163240.1| Holliday junction DNA helicase RuvB [Leptotrichia buccalis C-1013-b] gi|257049065|gb|ACV38249.1| Holliday junction DNA helicase RuvB [Leptotrichia buccalis C-1013-b] Length = 337 Score = 359 bits (921), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 175/329 (53%), Positives = 237/329 (72%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M+ E +L ED LRPRT +E+ GQ + + +FI+AAK R E+LDH+L G Sbjct: 1 MNEERILEPKELGEDNIQRSLRPRTFKEYIGQQDLKEKMNIFIKAAKMRNESLDHILLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+ V Sbjct: 61 PPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEIHRLNTSV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMED +LD+++G+GPSARS+++ L RFTLI ATTR G L+ PL+DRFG+ R+ Sbjct: 121 EEILYPAMEDGELDILIGKGPSARSIRVELPRFTLIGATTRAGQLSTPLRDRFGVTHRME 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y++E+LK I++RGA + ++ ++ EIA RSRGTPRIA RLL+R RDFA V + + Sbjct: 181 YYQLEELKEIIRRGANILNISYDEDGITEIAKRSRGTPRIANRLLKRARDFALVEGSGVL 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 +E D L L +D G D+LD L I + GGPVGIET+S L E R IE++ E Sbjct: 241 EKESVDGILRLLGVDDNGLDELDRNILLSIINVYNGGPVGIETLSLLLGEDRRTIEEVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 PY+++ GFI+RTPRGR++ ++HLGI+ Sbjct: 301 PYLVKIGFIKRTPRGRVVTEFGYRHLGIE 329 >gi|313892062|ref|ZP_07825660.1| Holliday junction DNA helicase RuvB [Dialister microaerophilus UPII 345-E] gi|329120928|ref|ZP_08249560.1| crossover junction ATP-dependent DNA helicase RuvB [Dialister micraerophilus DSM 19965] gi|313119514|gb|EFR42708.1| Holliday junction DNA helicase RuvB [Dialister microaerophilus UPII 345-E] gi|327471387|gb|EGF16838.1| crossover junction ATP-dependent DNA helicase RuvB [Dialister micraerophilus DSM 19965] Length = 365 Score = 359 bits (921), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 177/310 (57%), Positives = 223/310 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ E++ GQ E NL ++++AAK R EALDHVL GPPGLGKTTLA ++A ELGVN Sbjct: 34 LRPKIFEDYIGQSELKQNLNIYVKAAKNRKEALDHVLLYGPPGLGKTTLAGIIANELGVN 93 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGP I + GDLAALLTNL + DVLFIDEIHRL+ VEEILYPAMEDF LD+++G+G Sbjct: 94 FRVTSGPAIERPGDLAALLTNLNEHDVLFIDEIHRLNRSVEEILYPAMEDFALDIIIGKG 153 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARS + ++ FTLI ATTR G L PL+DRFGI R+ FY ++LK I+ R A + + Sbjct: 154 PGARSYHMPIAPFTLIGATTRAGSLAAPLRDRFGIIFRMKFYNPQELKQIIIRSANILQI 213 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRIA RLL+RVRDFA+V IT +IA AL L ID +G D Sbjct: 214 KIETKGAEEIAKRSRGTPRIANRLLKRVRDFAQVLGTGVITEDIAQKALSALHIDCLGLD 273 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 DL + I F GGPVGI+TI+A +SE + IED+ EPY+++ GF+ RTPRGR+ Sbjct: 274 VTDLEVIRTIITKFDGGPVGIDTIAASVSEEKSTIEDVYEPYLMKIGFLSRTPRGRIATK 333 Query: 322 IAWQHLGIDI 331 A++HL I + Sbjct: 334 AAYKHLNISV 343 >gi|148656547|ref|YP_001276752.1| Holliday junction DNA helicase RuvB [Roseiflexus sp. RS-1] gi|166231550|sp|A5UVZ9|RUVB_ROSS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|148568657|gb|ABQ90802.1| Holliday junction DNA helicase RuvB [Roseiflexus sp. RS-1] Length = 347 Score = 359 bits (921), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 184/329 (55%), Positives = 234/329 (71%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M RE +++ +ED I LRPR L EF GQ + L++ I AAK R E LDH L Sbjct: 1 MSRERVVTPKAGEEDQQIEKSLRPRRLAEFIGQEKVVEQLRIAIMAAKGRGEPLDHTLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT+LA V+A E+GVN + TSGP I +AGDLAALLTNL+ D+LFIDEIHRL+ Sbjct: 61 GPPGLGKTSLAGVLAAEMGVNIKLTSGPAIERAGDLAALLTNLQKDDILFIDEIHRLNRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EE+LYPAMEDF LD+MVG+GP ARS+++ L RFT+I ATTR+ LLT+PL+DRFG RL Sbjct: 121 IEEVLYPAMEDFALDIMVGKGPGARSLRLKLPRFTVIGATTRLALLTSPLRDRFGSVHRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY ++ L IV R A++ G+ T E A EIA R+RGTPRI RLLRRVRD+A+V Sbjct: 181 EFYSVDALYQIVMRSARILGVDCTPEGAHEIAARARGTPRIVNRLLRRVRDYAQVVGNGV 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT E A AL +L +D +G D D R L I F GGPVG+ T++A L+E DAIED+ Sbjct: 241 ITLETARDALAKLEVDHLGLDDNDRRLLRAIIELFNGGPVGLSTLAASLAEEVDAIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EP+++Q GF+QRTPRGR+ A++HLG+ Sbjct: 301 EPFLLQLGFLQRTPRGRIATRRAYEHLGV 329 >gi|289207746|ref|YP_003459812.1| Holliday junction DNA helicase RuvB [Thioalkalivibrio sp. K90mix] gi|288943377|gb|ADC71076.1| Holliday junction DNA helicase RuvB [Thioalkalivibrio sp. K90mix] Length = 348 Score = 359 bits (921), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 179/312 (57%), Positives = 228/312 (73%), Gaps = 1/312 (0%) Query: 7 LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L+ ED + + LRP+ L+++TGQ L +FIEAA+ R EALDH L GPPGL Sbjct: 5 LVDMQSQSEDPRVEVSLRPKRLDDYTGQPRVVEQLGLFIEAARGRGEALDHTLVAGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA +VA ELGV R TSGPV+ +AGDLAA+LT LE +DVLF+DEIHRL +VEEIL Sbjct: 65 GKTTLAHIVANELGVGLRQTSGPVLERAGDLAAILTALEPQDVLFVDEIHRLPTVVEEIL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPA+ED QLD+++GEGP+ARS+K++L FTL+ ATTR GLL+ PL+DRFGI RL+ Y + Sbjct: 125 YPALEDGQLDIVIGEGPAARSIKVDLPPFTLVGATTRAGLLSAPLRDRFGIVQRLDHYTV 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 DL IV R A L G+ + E A EIA R RGTPR+A RLLRRVRD+AEV + IT E+ Sbjct: 185 TDLAHIVGRAAGLLGVGIEPEGAAEIARRGRGTPRLANRLLRRVRDYAEVRASGVITAEV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL LAID G D D R L ++ F GGPVG+E+++ L+E R +ED++EP++I Sbjct: 245 AAQALDLLAIDASGLDAQDRRLLEVLVEKFDGGPVGVESLATALNEDRGTLEDVVEPFLI 304 Query: 306 QQGFIQRTPRGR 317 QQG++QRTPRGR Sbjct: 305 QQGYLQRTPRGR 316 >gi|289432492|ref|YP_003462365.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. GT] gi|288946212|gb|ADC73909.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. GT] Length = 362 Score = 358 bits (920), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 181/328 (55%), Positives = 237/328 (72%), Gaps = 1/328 (0%) Query: 3 DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++E L+S + +DA + + LRPR L +F GQ NL V I+AAK R EALDHVL G Sbjct: 17 EKERLISGKLVTDDAKLDTSLRPRCLPDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYG 76 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL+ D+LFIDEIHRLS V Sbjct: 77 PPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHRLSRNV 136 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMED+ LD+MVG+GP ARS+++ L FTLI ATTR +L+ PL+DRFG RL+ Sbjct: 137 EEVLYPAMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLD 196 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY+ E + IV+R A++ G+ + +IA RSRGTPR+A RLLRRVRD+A+V I Sbjct: 197 FYDEEAIHDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRDYAQVKGNGLI 256 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T +IA +L L +DK+G D++D + L I FGGGPVG+ETI+A +SE D I D+ E Sbjct: 257 TADIAAESLACLEVDKLGLDEIDHKVLKTIIHKFGGGPVGLETIAAAISEEADTIMDVYE 316 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 PY++Q GF++RTPRGR +A+QHL I Sbjct: 317 PYLLQLGFLERTPRGRQATRLAYQHLSI 344 >gi|46580660|ref|YP_011468.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris str. Hildenborough] gi|120602037|ref|YP_966437.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris DP4] gi|47606084|sp|P61531|RUVB_DESVH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231488|sp|A1VC44|RUVB_DESVV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|46450079|gb|AAS96728.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris str. Hildenborough] gi|120562266|gb|ABM28010.1| Holliday junction DNA helicase subunit RuvB [Desulfovibrio vulgaris DP4] gi|311234389|gb|ADP87243.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris RCH1] Length = 320 Score = 358 bits (920), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 172/308 (55%), Positives = 236/308 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L++F GQ E +N++V+++AA+ R +A+DHVLF G PGLGKTTLAQ++A ELGVN Sbjct: 11 VRPRLLDDFIGQDELRANMRVYLDAARERGQAMDHVLFYGNPGLGKTTLAQIMAGELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 STSGPV+ ++GDLAA+LTNL D+LF+DEIHR+ I VEE+LYPAMEDF+LDL++G+G Sbjct: 71 LVSTSGPVLERSGDLAAILTNLGRHDLLFVDEIHRMPIAVEEVLYPAMEDFKLDLVIGQG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+VKI++ FTL+ ATTR+GLL++PL+DRFGI RL +Y DL IV R A++ G Sbjct: 131 PGARTVKIDVEPFTLVGATTRIGLLSSPLRDRFGIISRLEYYTPADLARIVARTARIIGA 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T+E A EI R+RGTPRIA RLLRRVRDFA V I+ ++A AL R+ +D+ G D Sbjct: 191 NLTEEGAIEIGRRARGTPRIANRLLRRVRDFATVHAGGVISADLASEALGRMEVDESGLD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + L ++ ++GGGPVGI+T++ +E IED+ EPY+IQ GF++RTPRGR+ Sbjct: 251 QMDRKLLEVLIEHYGGGPVGIKTLAVACAEEVRTIEDIYEPYLIQCGFLKRTPRGRVATA 310 Query: 322 IAWQHLGI 329 A++HL + Sbjct: 311 KAYRHLNL 318 >gi|154504991|ref|ZP_02041729.1| hypothetical protein RUMGNA_02501 [Ruminococcus gnavus ATCC 29149] gi|153794874|gb|EDN77294.1| hypothetical protein RUMGNA_02501 [Ruminococcus gnavus ATCC 29149] Length = 334 Score = 358 bits (920), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 175/332 (52%), Positives = 247/332 (74%), Gaps = 2/332 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M R + + N+ +EDA I + LRP+ L ++ GQ +A L+V+I AAK R EALDHVLF Sbjct: 1 MGRRIITTENL-EEDAKIENHLRPQLLSDYIGQAKAKKMLEVYIRAAKERDEALDHVLFY 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ Sbjct: 60 GPPGLGKTTLAGIIANEMGVNLKVTSGPAIEKPGEMAAILNNLQEHDVLFVDEIHRLNRQ 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMED+ +D+M+G+G +ARS++++L +FTL+ ATTR G+LT PL+DRFG+ RL Sbjct: 120 VEEVLYPAMEDYAIDIMIGKGATARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVNRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E+L TI++R A++ + + + A E+A RSRGTPR+A RLL+RVRDFA+V + Sbjct: 180 EFYTEEELMTIIKRSARVLNVEIDTKGALELAKRSRGTPRLANRLLKRVRDFAQVKYDGV 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT E+A+ AL L +D+ G D D L ++ F GGPVG++T++A +SE +ED+ Sbjct: 240 ITEEVANYALDLLDVDRYGLDHGDRMILQVMIEKFQGGPVGLDTLAASISEDSGTLEDVY 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+++ GFIQRTPRGR++ +A++HLGI P Sbjct: 300 EPYLLKCGFIQRTPRGRVVTDLAYRHLGILPP 331 >gi|322807371|emb|CBZ04945.1| holliday junction DNA helicase RuvB [Clostridium botulinum H04402 065] Length = 342 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 176/316 (55%), Positives = 233/316 (73%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ++D + LRP TL+E+ GQ + +NL +FI+AAK R+E+LDHVLF GPPGLGKTTLA + Sbjct: 12 EDDREQYSLRPTTLKEYIGQKKVKANLDIFIKAAKKRSESLDHVLFYGPPGLGKTTLANI 71 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+ N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+ +EEILYPAMED+ Sbjct: 72 IANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEEILYPAMEDYA 131 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+ + FY E+L IV Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFYTDEELMEIVV 191 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + + + EAA EI RSRGTPRIA RLL+RVRD+ +V H I + A AAL L Sbjct: 192 RSAAILNVNICREAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDLQGAKAALDLL 251 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +DK G D++D + L I NF GGPVG+ET++ + E D IED+ EPY+IQ+GFI RT Sbjct: 252 EVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPYLIQKGFIMRT 311 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR+ A+ H G+ Sbjct: 312 PRGRVASEKAYNHFGV 327 >gi|225011146|ref|ZP_03701608.1| Holliday junction DNA helicase RuvB [Flavobacteria bacterium MS024-3C] gi|225004708|gb|EEG42668.1| Holliday junction DNA helicase RuvB [Flavobacteria bacterium MS024-3C] Length = 340 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 183/321 (57%), Positives = 230/321 (71%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 S +++ E DI LRP + +FTGQ + NL +F++AA R EALDH LF GPPGLGK Sbjct: 9 SDHLTPESLDIEKALRPLSFNDFTGQEQVLENLSIFVKAANLREEALDHTLFHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A ELGV + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS IVEE LY Sbjct: 69 TTLAHILANELGVGIKITSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSPIVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+++D+M+ GP+ARSV+I+L+ FTLI ATTR GLLT P++ RFGI RL +Y E Sbjct: 129 AMEDYKIDIMIESGPNARSVQIHLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTEL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV R A++ + +TDEAA EIA RSRGTPRI LLRRVRDFA++ I EIA Sbjct: 189 LSTIVTRSAEILKVPITDEAAIEIAGRSRGTPRICNALLRRVRDFAQIKGNGKIDLEIAQ 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 L L +D G D++D + LT + F GGPVGI T++ +SE + IE++ EP++IQQ Sbjct: 249 FGLGALHVDAHGLDEMDNKILTTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQ 308 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 GFI RTPRGR + A+ HLG Sbjct: 309 GFIMRTPRGREVTAAAYTHLG 329 >gi|86131987|ref|ZP_01050583.1| Holliday junction ATP-dependent DNA helicase RuvB [Dokdonia donghaensis MED134] gi|85817321|gb|EAQ38501.1| Holliday junction ATP-dependent DNA helicase RuvB [Dokdonia donghaensis MED134] Length = 340 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 180/321 (56%), Positives = 235/321 (73%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 + S+E+ DI LRP + ++F GQ + NLKVF++AA R EALDH LF GPPGLGK Sbjct: 9 NEGYSREEVDIEKALRPLSFDDFAGQDQVLENLKVFVQAANLRGEALDHTLFHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A ELGVN + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY Sbjct: 69 TTLANILANELGVNIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+++D+M+ GP+AR+V+I+L+ FTL+ ATTR GLLT P++ RFGI RL +Y E Sbjct: 129 AMEDYRIDIMIETGPNARTVQIDLAPFTLVGATTRSGLLTAPMRARFGISSRLQYYTTEL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIVQR + + G+ ++ EAA EIA RSRGTPRIA LLRRVRDFA++ +I +IA Sbjct: 189 LTTIVQRSSSILGVPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGSIDIKIAK 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 +L L +D G D++D + L I F GGPVG+ T++ +SE + IE++ EP++IQQ Sbjct: 249 YSLEALHVDAHGLDEMDNKILATIIDKFKGGPVGLTTLATAVSESAETIEEVYEPFLIQQ 308 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 GFI RTPRGR + A++HLG Sbjct: 309 GFIMRTPRGREVTEDAYKHLG 329 >gi|73748445|ref|YP_307684.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. CBDB1] gi|147669225|ref|YP_001214043.1| Holliday junction DNA helicase B [Dehalococcoides sp. BAV1] gi|97190027|sp|Q3ZWZ9|RUVB_DEHSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189046030|sp|A5FRK7|RUVB_DEHSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|73660161|emb|CAI82768.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. CBDB1] gi|146270173|gb|ABQ17165.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. BAV1] Length = 349 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 181/328 (55%), Positives = 237/328 (72%), Gaps = 1/328 (0%) Query: 3 DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++E L+S + +DA + + LRPR L +F GQ NL V I+AAK R EALDHVL G Sbjct: 4 EKERLISGKLVTDDAKLDTSLRPRCLPDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYG 63 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL+ D+LFIDEIHRLS V Sbjct: 64 PPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHRLSRNV 123 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMED+ LD+MVG+GP ARS+++ L FTLI ATTR +L+ PL+DRFG RL+ Sbjct: 124 EEVLYPAMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLD 183 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY+ E + IV+R A++ G+ + +IA RSRGTPR+A RLLRRVRD+A+V I Sbjct: 184 FYDEEAIHDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRDYAQVKGNGLI 243 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T +IA +L L +DK+G D++D + L I FGGGPVG+ETI+A +SE D I D+ E Sbjct: 244 TADIAAESLACLEVDKLGLDEIDHKVLKTIIHKFGGGPVGLETIAAAISEEADTIMDVYE 303 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 PY++Q GF++RTPRGR +A+QHL I Sbjct: 304 PYLLQLGFLERTPRGRQATRLAYQHLSI 331 >gi|331085083|ref|ZP_08334170.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408783|gb|EGG88248.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae bacterium 9_1_43BFAA] Length = 333 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 173/322 (53%), Positives = 237/322 (73%), Gaps = 1/322 (0%) Query: 14 QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED I S LRP L+++ GQ +A LK++IEAAKAR E+LDHVLF GPPGLGKTTLA Sbjct: 12 EEDVKIESHLRPTLLKDYIGQEKAKETLKIYIEAAKARGESLDHVLFYGPPGLGKTTLAG 71 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+LYPAMED+ Sbjct: 72 IIANEMEVNVKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVLYPAMEDY 131 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+M+G+G ARS++++L FTL+ ATTR G+LT PL+DRFG+ RL FY E+L+TI+ Sbjct: 132 VIDIMIGKGAGARSIRLDLPHFTLVGATTRAGMLTAPLRDRFGVVQRLEFYTEEELRTII 191 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A + G+ + + A E+A RSRGTPR+A RLL+RVRDFA+V + IT E+A+ AL Sbjct: 192 MRSADVLGVEIDAKGALELAKRSRGTPRLANRLLKRVRDFAQVKYDGRITEEVANYALDL 251 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D+ G D +D L + F GGPVG+ET++A + E IED+ EPY+++ GFIQR Sbjct: 252 LDVDRYGLDHVDRNLLLAMIEKFQGGPVGLETLAASIGEDSGTIEDVCEPYLLKNGFIQR 311 Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334 TPRGR++ A+ HLGI ++ Sbjct: 312 TPRGRIVTDKAYAHLGISYKNQ 333 >gi|290769836|gb|ADD61609.1| putative protein [uncultured organism] Length = 362 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 182/311 (58%), Positives = 224/311 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL E+ GQ +A NLKVFIEAAK R E LDHVL GPPGLGKTTL+ ++A ELGV+ Sbjct: 33 LRPKTLSEYIGQEKAKENLKVFIEAAKIRGETLDHVLLYGPPGLGKTTLSGIIANELGVS 92 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I K GDLAALLTNL + DVLFIDEIHRLS VEEILYP+MEDF +D++ G+G Sbjct: 93 MRITSGPAIEKPGDLAALLTNLNEGDVLFIDEIHRLSRSVEEILYPSMEDFAIDIITGKG 152 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A S + L +FTL+ ATTR G LT PL+DRFG+ +RL Y E+L IV+R A + G+ Sbjct: 153 QMAASYHLPLPKFTLVGATTRAGQLTAPLRDRFGVVLRLELYTPEELAQIVERSAGILGI 212 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRIA RLL+RVRDFA+V IT E A AL RL ID++G D Sbjct: 213 KIEHDGALEIASRSRGTPRIANRLLKRVRDFAQVMSNGVITLETARTALDRLEIDELGLD 272 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D R L I R + GGPVG+ET++A + E IED+ EPY++Q GF+ RTPRGR + Sbjct: 273 RNDRRMLEAIVRFYNGGPVGLETLAAAIGEEAVTIEDVYEPYLLQIGFVSRTPRGRCITA 332 Query: 322 IAWQHLGIDIP 332 A +HLG + P Sbjct: 333 EACKHLGCEFP 343 >gi|302335492|ref|YP_003800699.1| Holliday junction DNA helicase subunit RuvB [Olsenella uli DSM 7084] gi|301319332|gb|ADK67819.1| Holliday junction DNA helicase subunit RuvB [Olsenella uli DSM 7084] Length = 356 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 175/326 (53%), Positives = 239/326 (73%), Gaps = 1/326 (0%) Query: 8 LSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 +S ++ +D D+ LRP TL+E+ GQ NL+V I AAK R E LDHVLF GPPGLG Sbjct: 28 VSAELTTDDLDVEHSLRPVTLDEYCGQERVRENLRVLIAAAKDRHETLDHVLFSGPPGLG 87 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA VVA E+G R+TSGP IA+ GDLAA+LTNLE+ DVLF+DEIHRL+ VEE+LY Sbjct: 88 KTTLANVVANEMGARLRTTSGPAIARTGDLAAILTNLEEGDVLFVDEIHRLNHQVEEVLY 147 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDF LD+++G+GP+ARS+++++ FTL+ ATTR GLLT PL+DRFGI RL++Y IE Sbjct: 148 PAMEDFFLDIVIGKGPAARSIRLDVPHFTLVGATTRTGLLTGPLRDRFGISYRLDYYTIE 207 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L IV+R A++ G+ + D+ A EIA RSRGTPR+A RLL+RVRD+A+V ++ ++A Sbjct: 208 ELAGIVRRSARILGVEIDDQGAAEIASRSRGTPRLANRLLKRVRDYAQVKAQGSVAWDVA 267 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 AL ID+MG D +D++ L + R F G VG+ TI++ + E +ED+ EPY++Q Sbjct: 268 AEALSFFEIDEMGLDWMDVKILEALTRTFRGRAVGLTTIASAVGEDPSTLEDVYEPYLLQ 327 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332 +G I RTP+GR +A++HLG+ P Sbjct: 328 RGLIVRTPQGRQATSLAFEHLGVASP 353 >gi|291542960|emb|CBL16070.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus bromii L2-63] Length = 362 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 182/311 (58%), Positives = 224/311 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL E+ GQ +A NLKVFIEAAK R E LDHVL GPPGLGKTTL+ ++A ELGV+ Sbjct: 33 LRPKTLSEYIGQEKAKENLKVFIEAAKIRGETLDHVLLYGPPGLGKTTLSGIIANELGVS 92 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I K GDLAALLTNL + DVLFIDEIHRLS VEEILYP+MEDF +D++ G+G Sbjct: 93 MRITSGPAIEKPGDLAALLTNLNEGDVLFIDEIHRLSRSVEEILYPSMEDFAIDIITGKG 152 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A S + L +FTL+ ATTR G LT PL+DRFG+ +RL Y E+L IV+R A + G+ Sbjct: 153 QMAASYHLPLPKFTLVGATTRAGQLTAPLRDRFGVVLRLELYTPEELAQIVERSAGILGI 212 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRIA RLL+RVRDFA+V IT E A AL RL ID++G D Sbjct: 213 KIEHDGALEIASRSRGTPRIANRLLKRVRDFAQVMSNGVITLETARTALDRLEIDELGLD 272 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D R L I R + GGPVG+ET++A + E IED+ EPY++Q GF+ RTPRGR + Sbjct: 273 RNDRRMLDAIVRFYNGGPVGLETLAAAIGEEAVTIEDVYEPYLLQIGFVSRTPRGRCITA 332 Query: 322 IAWQHLGIDIP 332 A +HLG + P Sbjct: 333 EACKHLGCEFP 343 >gi|325832021|ref|ZP_08165118.1| Holliday junction DNA helicase RuvB [Eggerthella sp. HGA1] gi|325486342|gb|EGC88794.1| Holliday junction DNA helicase RuvB [Eggerthella sp. HGA1] Length = 363 Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 172/311 (55%), Positives = 234/311 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ + +L + IEAA+AR + +DH+LF GPPGLGKTTLA VVA ELG N Sbjct: 50 LRPKRLGDYLGQTKIKESLAILIEAAQARGDVVDHILFSGPPGLGKTTLATVVANELGAN 109 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I + GDLAA+LTNLE+ DVLFIDEIHRL+ +VEE+LYPA+EDF LD++VG+G Sbjct: 110 IKTTSGPAIERTGDLAAILTNLEEGDVLFIDEIHRLNRMVEEVLYPALEDFALDIVVGKG 169 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS++++L RFTL+ ATTR GLLT PL+DRFGI RL +Y E+L +IV+R A + + Sbjct: 170 PAARSIRLDLPRFTLVGATTRTGLLTGPLRDRFGIVFRLQYYSPEELASIVRRSASILDV 229 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ ++ A EIA RSRGTPR+A RLL+RVRD+A+V I ++A AL +D +G D Sbjct: 230 AIEEDGALEIARRSRGTPRLANRLLKRVRDWAQVRGDGIIDEDVAAQALSFFEVDALGLD 289 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L ++A FGG PVG+ T+++ LSE D +ED+ EPY++QQG + RTP+GR+ Sbjct: 290 MMDNRILELLAVQFGGRPVGLTTLASALSEDTDTLEDVYEPYLMQQGLLVRTPKGRICTE 349 Query: 322 IAWQHLGIDIP 332 A+ HLGI +P Sbjct: 350 RAYDHLGIPVP 360 >gi|153939305|ref|YP_001392348.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str. Langeland] gi|168179564|ref|ZP_02614228.1| holliday junction DNA helicase RuvB [Clostridium botulinum NCTC 2916] gi|168181760|ref|ZP_02616424.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Bf] gi|170754942|ref|YP_001782705.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B1 str. Okra] gi|226950499|ref|YP_002805590.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A2 str. Kyoto] gi|237796526|ref|YP_002864078.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Ba4 str. 657] gi|166231485|sp|A7GHT8|RUVB_CLOBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|229564226|sp|B1IMF3|RUVB_CLOBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767420|sp|C1FKG1|RUVB_CLOBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|259495661|sp|C3KTD2|RUVB_CLOB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|152935201|gb|ABS40699.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str. Langeland] gi|169120154|gb|ACA43990.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B1 str. Okra] gi|182669708|gb|EDT81684.1| holliday junction DNA helicase RuvB [Clostridium botulinum NCTC 2916] gi|182675108|gb|EDT87069.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Bf] gi|226841138|gb|ACO83804.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A2 str. Kyoto] gi|229264087|gb|ACQ55120.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Ba4 str. 657] gi|295320340|gb|ADG00718.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str. 230613] Length = 342 Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 176/316 (55%), Positives = 233/316 (73%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ++D + LRP TL+E+ GQ + +NL +FI+AAK R+E+LDHVLF GPPGLGKTTLA + Sbjct: 12 EDDREQYSLRPTTLKEYIGQKKVKANLDIFIKAAKKRSESLDHVLFYGPPGLGKTTLANI 71 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+ N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+ +EEILYPAMED+ Sbjct: 72 IANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEEILYPAMEDYA 131 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+ + FY E+L IV Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFYTDEELMEIVV 191 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + + + EAA EI RSRGTPRIA RLL+RVRD+ +V H I + A AAL L Sbjct: 192 RSAAILNVNICREAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDLQGAKAALDLL 251 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +DK G D++D + L I NF GGPVG+ET++ + E D IED+ EPY+IQ+GFI RT Sbjct: 252 EVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPYLIQKGFIMRT 311 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR+ A+ H G+ Sbjct: 312 PRGRVASEKAYNHFGV 327 >gi|295109924|emb|CBL23877.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus obeum A2-162] Length = 334 Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 172/332 (51%), Positives = 246/332 (74%), Gaps = 2/332 (0%) Query: 2 MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD+ +++ +V +ED + LRP+TL+E+ GQ + LK++IEAAK R +ALDHVLF Sbjct: 1 MDKR-MITTDVIEEDLPLEGNLRPQTLDEYIGQEKTKKTLKIYIEAAKQRHDALDHVLFY 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ ++A E+G + + TSGP I K G++AA+L NL++ D+LF+DEIHRL+ Sbjct: 60 GPPGLGKTTLSGIIANEMGTHMKVTSGPAIEKPGEMAAILNNLQEGDILFVDEIHRLNRQ 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF +D+M+G+G SARS++++L +FTL+ ATTR GLL+ PL+DRFG+ L Sbjct: 120 VEEVLYPAMEDFAIDIMIGKGASARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVMHHL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY+ ++L+TI+ R A++ G+ + A EIA RSRGTPR+A RLL+RVRDFA+V + Sbjct: 180 EFYDQKELQTIILRSAEVLGVEIDTRGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYDGR 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT E+A AL L +D+ G D++D R L + NF GGPVG+ET++A + E +ED+ Sbjct: 240 ITYEVAVFALDLLEVDQYGLDKIDRRILQTLIVNFQGGPVGLETLAAAIGEDAGTLEDVY 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q GF+ RTPRGR +A++HLG + P Sbjct: 300 EPYLLQNGFLNRTPRGRTASALAYEHLGFEKP 331 >gi|258514398|ref|YP_003190620.1| Holliday junction DNA helicase RuvB [Desulfotomaculum acetoxidans DSM 771] gi|257778103|gb|ACV61997.1| Holliday junction DNA helicase RuvB [Desulfotomaculum acetoxidans DSM 771] Length = 336 Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 177/324 (54%), Positives = 237/324 (73%), Gaps = 1/324 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L++ + ED+D+ + LRPR LE++ GQ + L +FI AA+ARAE+LDHVL GPPGL Sbjct: 5 LVASGLHAEDSDLETSLRPRRLEQYIGQDKVKETLAIFIRAAQARAESLDHVLLYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+GVN R TSGP I + GDLAA+LTNL DVLFIDEIHRLS VEE+L Sbjct: 65 GKTTLANIIAHEMGVNIRVTSGPAIERQGDLAAILTNLGQGDVLFIDEIHRLSRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF LD+M+G+GP ARSV++NL FTL+ ATTR GLLT+PL+DRFG+ RL+FY Sbjct: 125 YPAMEDFALDIMIGKGPGARSVRLNLPSFTLVGATTRAGLLTSPLRDRFGVISRLDFYTT 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++L I+ R A++ +A ++ A IA RSRGTPR+A RLL+RVRD+++V I + Sbjct: 185 DELMQIILRTAQILRVAADEQGALAIASRSRGTPRVANRLLKRVRDYSQVRSDGMINGVL 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AD AL L ID +G D++D + L + FGGGPVG++T++A E IED++EP+++ Sbjct: 245 ADEALQFLEIDDLGLDEVDRKLLKAVIEKFGGGPVGLDTLAASTGEEAGTIEDVLEPFLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 Q G + RTPRGR++ A+ HLGI Sbjct: 305 QLGLLARTPRGRVVTQRAYSHLGI 328 >gi|296126244|ref|YP_003633496.1| Holliday junction DNA helicase RuvB [Brachyspira murdochii DSM 12563] gi|296018060|gb|ADG71297.1| Holliday junction DNA helicase RuvB [Brachyspira murdochii DSM 12563] Length = 345 Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 175/329 (53%), Positives = 232/329 (70%), Gaps = 1/329 (0%) Query: 2 MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD+E +++ S + D + +RP+ ++F GQ S LKVFI++A R +LDH+LF Sbjct: 1 MDKESIINAEETSYDKEDNNSIRPKGFDDFLGQNNIKSKLKVFIKSALKRDVSLDHILFY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLAQ++A E+G + ++TS P+I + GDLA++LT L ++D+LFIDEIHRL + Sbjct: 61 GPPGLGKTTLAQIIANEMGSSIKATSAPIIERPGDLASILTTLGEKDILFIDEIHRLRTV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LY AMEDF +D+ VGEG SA+S ++ L FTLI ATTR GLL+ PL DRFGI RL Sbjct: 121 VEEVLYSAMEDFFVDIKVGEGTSAKSFRVKLPHFTLIGATTRSGLLSTPLYDRFGIVERL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY EDL IV+R +K + +TD AA IA RSRGTPRI RLLRRV DFA V Sbjct: 181 EFYTNEDLANIVKRSSKFLDIDITDSAALSIASRSRGTPRIVNRLLRRVFDFATVHDVLK 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I E A +L +L IDK GF+ LD YL I +++ GGPVG++T+S LSE + IED+I Sbjct: 241 IDEEFASNSLEKLGIDKNGFEALDKLYLNTIIKHYNGGPVGVDTLSVSLSEQIETIEDVI 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY+IQ GFI+RTP+GR+ A+ +L + Sbjct: 301 EPYLIQSGFIKRTPKGRVATNKAYSYLNL 329 >gi|325661159|ref|ZP_08149786.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae bacterium 4_1_37FAA] gi|325472666|gb|EGC75877.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae bacterium 4_1_37FAA] Length = 333 Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 173/322 (53%), Positives = 237/322 (73%), Gaps = 1/322 (0%) Query: 14 QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED I S LRP L+++ GQ +A LK++IEAAKAR E+LDHVLF GPPGLGKTTLA Sbjct: 12 EEDVKIESHLRPTLLKDYIGQEKAKETLKIYIEAAKARGESLDHVLFYGPPGLGKTTLAG 71 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+LYPAMED+ Sbjct: 72 IIANEMEVNVKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVLYPAMEDY 131 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+M+G+G ARS++++L FTL+ ATTR G+LT PL+DRFG+ RL FY E+L+TI+ Sbjct: 132 VIDIMIGKGAGARSIRLDLPHFTLVGATTRAGMLTAPLRDRFGVVQRLEFYTEEELRTII 191 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A + G+ + + A E+A RSRGTPR+A RLL+RVRDFA+V + IT E+A+ AL Sbjct: 192 MRSADVLGVEIDAKGALELAKRSRGTPRLANRLLKRVRDFAQVKYDGRITEEVANYALDL 251 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D+ G D +D L + F GGPVG+ET++A + E IED+ EPY+++ GFIQR Sbjct: 252 LDVDRYGLDHVDRNLLLAMIEKFQGGPVGLETLAASIGEDSGTIEDVCEPYLLKNGFIQR 311 Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334 TPRGR++ A+ HLGI ++ Sbjct: 312 TPRGRVVTDKAYAHLGISYKNQ 333 >gi|94987629|ref|YP_595562.1| Holliday junction DNA helicase RuvB [Lawsonia intracellularis PHE/MN1-00] gi|122988756|sp|Q1MP36|RUVB_LAWIP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|94731878|emb|CAJ55241.1| Holliday junction resolvasome, helicase subunit [Lawsonia intracellularis PHE/MN1-00] Length = 341 Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 171/308 (55%), Positives = 231/308 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L++F GQ E NLKVF+ AA+ R +A+DH LF G PGLGKTTLAQ++A ELGVN Sbjct: 32 IRPSRLDDFIGQEELRENLKVFLNAARDRGQAMDHTLFYGNPGLGKTTLAQIIAAELGVN 91 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGPV+ ++GDLAA+LTNL D+LF+DEIHR+ I VEEILYPA+ED++LDL++G+G Sbjct: 92 LICTSGPVLERSGDLAAILTNLSKHDILFVDEIHRMPITVEEILYPALEDYKLDLVIGQG 151 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+VKI L FTL+ ATTR+GL+++PL+DRFGI RL FY E+L I+ R +++ + Sbjct: 152 PAARTVKIELEPFTLVGATTRIGLISSPLRDRFGIISRLEFYTPEELSQIILRTSRILNV 211 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T + A EI RSRGTPRIA RLLRRVRDFA V + T+ E+ + AL +L +D+ G D Sbjct: 212 PITKKGAIEIGRRSRGTPRIANRLLRRVRDFAAVFGSATVDEELVNHALQKLDVDEKGLD 271 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + LT++ F GGPVGI+T++ SE IED+ EPY+IQ GF++RTPRGR+ Sbjct: 272 QMDRKLLTVLIELFAGGPVGIKTLAVACSEEVRTIEDIYEPYLIQCGFMKRTPRGRMATV 331 Query: 322 IAWQHLGI 329 A++HL + Sbjct: 332 KAYKHLNL 339 >gi|260887320|ref|ZP_05898583.1| holliday junction DNA helicase RuvB [Selenomonas sputigena ATCC 35185] gi|330838927|ref|YP_004413507.1| Holliday junction DNA helicase RuvB [Selenomonas sputigena ATCC 35185] gi|260862956|gb|EEX77456.1| holliday junction DNA helicase RuvB [Selenomonas sputigena ATCC 35185] gi|329746691|gb|AEC00048.1| Holliday junction DNA helicase RuvB [Selenomonas sputigena ATCC 35185] Length = 337 Score = 358 bits (919), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 186/330 (56%), Positives = 246/330 (74%), Gaps = 1/330 (0%) Query: 1 MMDREG-LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M + EG +++++ ED LRPR L E+ GQ +A NLKVF++AA R EALDHVL Sbjct: 1 MEEMEGRIIAQDERTEDTWQYSLRPRKLAEYIGQKKAKENLKVFVQAALNRGEALDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A ELGVNFR TSGP I ++GDLAALLTNL +RDVLFIDEIHRLS Sbjct: 61 YGPPGLGKTTLAGIIANELGVNFRITSGPAIERSGDLAALLTNLGERDVLFIDEIHRLSR 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LY AMEDF LD+++G+GPSARS++++++ FTL+ ATT+ G L PL+DRFG+ R Sbjct: 121 SVEEVLYSAMEDFALDIIIGKGPSARSIRLDIAPFTLVGATTKAGALAAPLRDRFGVISR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +YE +L I++R A++ +++ A +IA RSRGTPR+A RLL+RVRDFA+V A Sbjct: 181 LEYYEPSELMHIIERAAEILQISIERSGAEKIARRSRGTPRVANRLLKRVRDFAQVEGAA 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT IADAAL RL +D++G D D R L + + F GGPVG+ET++A +SE D IE + Sbjct: 241 AITAAIADAALDRLEVDRIGLDHTDRRMLLTMIQKFAGGPVGLETLAAAISEESDTIEGV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GFI RTPRGR++ A++HLG+ Sbjct: 301 YEPYLLQLGFINRTPRGRIVTRAAYEHLGV 330 >gi|256827685|ref|YP_003151644.1| Holliday junction DNA helicase, RuvB subunit [Cryptobacterium curtum DSM 15641] gi|256583828|gb|ACU94962.1| Holliday junction DNA helicase, RuvB subunit [Cryptobacterium curtum DSM 15641] Length = 342 Score = 358 bits (919), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 172/316 (54%), Positives = 236/316 (74%), Gaps = 4/316 (1%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR LE++ GQ + +L++ I+AA+ R + +DH+LF GPPGLGKTTLA VVA E+G + Sbjct: 27 LRPRMLEDYLGQTKIKDSLRILIKAAQQREDVVDHILFSGPPGLGKTTLATVVANEMGAH 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP IA+ GDLAA+LTNLED DVLFIDEIHR++ +VEE+LYPA+ED+ LD++VG+G Sbjct: 87 IKTTSGPAIARTGDLAAILTNLEDGDVLFIDEIHRMNRMVEEVLYPALEDYALDIVVGKG 146 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS++++L +FTLI ATTR GLLT PL+DRFGI RLN+Y E+L IV R A++ + Sbjct: 147 PAARSIRLDLPKFTLIGATTRTGLLTGPLRDRFGIAFRLNYYTPEELSAIVVRSAEILEV 206 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ E A EIA RSRGTPR+A RLL+RVRD+A+V +I + A AL +D +G D Sbjct: 207 SIDAEGALEIARRSRGTPRLANRLLKRVRDWAQVKGNGSIDEDCAAEALSFFEVDSLGLD 266 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L ++ + FGG PVG+ T+++ LSE D++ED+ EPY++QQG + RTP+GR Sbjct: 267 AVDNRILQLLCQQFGGQPVGLSTLASALSEDPDSLEDVYEPYLMQQGLLIRTPKGRQATD 326 Query: 322 IAWQHLGI----DIPH 333 A+ HLGI D PH Sbjct: 327 RAYHHLGILAPSDKPH 342 >gi|138896158|ref|YP_001126611.1| Holliday junction DNA helicase RuvB [Geobacillus thermodenitrificans NG80-2] gi|166231496|sp|A4IRB2|RUVB_GEOTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|134267671|gb|ABO67866.1| Holliday junction DNA helicase RuvB [Geobacillus thermodenitrificans NG80-2] Length = 333 Score = 358 bits (919), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 174/313 (55%), Positives = 230/313 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + NL+VFIEAAK R E LDHVL GPPGLGKTTLA ++A E+GV Sbjct: 21 LRPQYLHEYIGQDKVKENLQVFIEAAKLREETLDHVLLYGPPGLGKTTLAAIIANEMGVK 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP + + GDLAALLT+LE DVLFIDEIHRL VEE+LYPAMED+ LD+ VG+G Sbjct: 81 MRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRTVEEVLYPAMEDYCLDITVGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARS++++L FTL+ ATTR G L+ PL+DRFG+ RL +Y+++ L I++R A + + Sbjct: 141 PEARSLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYYQVDQLAQIIERAAAILHI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +EAA E+A R+RGTPRIA RLLRRVRDFA+V IT +A AL RL +D++G D Sbjct: 201 IINNEAALELARRARGTPRIANRLLRRVRDFAQVRGDGEITLPLAVEALERLQVDRLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+ET++A + E IE++ EPY++Q G +QRTPRGR+ P Sbjct: 261 HIDHKLLLAIIEKFAGGPVGLETMAAVIGEEAQTIEEVYEPYLLQIGLLQRTPRGRVATP 320 Query: 322 IAWQHLGIDIPHR 334 A+ HLG+++P R Sbjct: 321 AAYAHLGMEVPKR 333 >gi|242280345|ref|YP_002992474.1| Holliday junction DNA helicase RuvB [Desulfovibrio salexigens DSM 2638] gi|242123239|gb|ACS80935.1| Holliday junction DNA helicase RuvB [Desulfovibrio salexigens DSM 2638] Length = 327 Score = 358 bits (918), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 176/306 (57%), Positives = 228/306 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L +F GQ + NL VFI+AA+ R A+DH LF G PGLGKTTLA+++A ELGVN Sbjct: 10 IRPQRLTDFIGQDDLRDNLDVFIQAARGRGNAMDHALFYGNPGLGKTTLARIIASELGVN 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 STSGPV+ ++GDLAA+LTNL D+LFIDEIHR+ VEE+LYPAMEDF +DL++G+G Sbjct: 70 LISTSGPVLERSGDLAAILTNLSRNDILFIDEIHRVPATVEEVLYPAMEDFNIDLIIGQG 129 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+VKI+L FTL+ ATTR+GLLT+PL+DRFG RL FY E+L IV R A++ L Sbjct: 130 PAARTVKIDLEPFTLVGATTRLGLLTSPLRDRFGCIFRLEFYSPEELARIVTRAARIFDL 189 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 VTDE A I RSRGTPRIA RLLRRVRDFA V ++ E+AD AL +L +D +G D Sbjct: 190 KVTDEGALIIGKRSRGTPRIANRLLRRVRDFATVHGDGVVSGELADMALNKLDVDPLGLD 249 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L+++ FGGGPVG++TI+ SE IE++ EPY+IQ GF++RTPRGR+ Sbjct: 250 YMDRKILSILIDQFGGGPVGVKTIAVACSEEVRTIEEIYEPYLIQCGFMKRTPRGRVATA 309 Query: 322 IAWQHL 327 A+QHL Sbjct: 310 RAYQHL 315 >gi|170760872|ref|YP_001788390.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A3 str. Loch Maree] gi|238688789|sp|B1L0B2|RUVB_CLOBM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|169407861|gb|ACA56272.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A3 str. Loch Maree] Length = 342 Score = 358 bits (918), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 176/316 (55%), Positives = 232/316 (73%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ++D + LRP TL+E+ GQ + +NL +FI+AAK R E+LDHVLF GPPGLGKTTLA + Sbjct: 12 EDDKEQYSLRPTTLKEYIGQKKVKANLDIFIKAAKKRNESLDHVLFYGPPGLGKTTLANI 71 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+ N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+ +EEILYPAMED+ Sbjct: 72 IANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEEILYPAMEDYA 131 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+ + FY E+L IV Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFYTDEELMEIVV 191 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + + + EAA EI RSRGTPRIA RLL+RVRD+ +V H I + A AAL L Sbjct: 192 RSAAILNVNICREAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDLQGAKAALDLL 251 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +DK G D++D + L I NF GGPVG+ET++ + E D IED+ EPY+IQ+GFI RT Sbjct: 252 EVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPYLIQKGFIMRT 311 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR+ A+ H G+ Sbjct: 312 PRGRVASEKAYNHFGV 327 >gi|281424884|ref|ZP_06255797.1| holliday junction DNA helicase RuvB [Prevotella oris F0302] gi|299142290|ref|ZP_07035423.1| holliday junction DNA helicase RuvB [Prevotella oris C735] gi|281401002|gb|EFB31833.1| holliday junction DNA helicase RuvB [Prevotella oris F0302] gi|298576379|gb|EFI48252.1| holliday junction DNA helicase RuvB [Prevotella oris C735] Length = 344 Score = 358 bits (918), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 176/318 (55%), Positives = 231/318 (72%), Gaps = 1/318 (0%) Query: 12 VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +S E+ D + LRP +F GQ + NL++F+EAAK R E LDH L GPPGLGKTTL Sbjct: 12 LSTEEKDFENALRPLRFADFNGQKKVVENLEIFVEAAKYRGEPLDHTLLYGPPGLGKTTL 71 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AME Sbjct: 72 SNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAME 131 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+++D+M+ +GPSARS++I+L+ FTL+ ATTR G+LT PL+ RFGI + L +Y+ E LK Sbjct: 132 DYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGMLTAPLRARFGINMHLEYYDPETLKR 191 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 I++R A L + + DEAA EI+ RSRGTPRIA LLRRVRDFA+V TIT EIA L Sbjct: 192 IIRRSAMLLKVPIDDEAAIEISRRSRGTPRIANALLRRVRDFAQVKGNGTITNEIAHIGL 251 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L ID+ G D++D + L I F GGPVG+ TI+ + E +ED+ EP++I +GFI Sbjct: 252 QSLNIDQYGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDAGTVEDVYEPFLIMEGFI 311 Query: 311 QRTPRGRLLMPIAWQHLG 328 +RTPRGR+ P+A++HLG Sbjct: 312 KRTPRGRMATPLAYEHLG 329 >gi|313114598|ref|ZP_07800106.1| Holliday junction DNA helicase RuvB [Faecalibacterium cf. prausnitzii KLE1255] gi|310623062|gb|EFQ06509.1| Holliday junction DNA helicase RuvB [Faecalibacterium cf. prausnitzii KLE1255] Length = 351 Score = 358 bits (918), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 171/327 (52%), Positives = 234/327 (71%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 ++ ++ D++ + LRP+ LE++ GQ + NLK+++EAAK R E +DH+L GPPGLG Sbjct: 12 MMQPGMTAADSEENNLRPQHLEDYIGQEKVKQNLKIYLEAAKRRGEPMDHILLYGPPGLG 71 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A E+GV R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS VEE+LY Sbjct: 72 KTTLAGIIANEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLY 131 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PA+ED+ LD+M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L Y + Sbjct: 132 PALEDYALDIMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPD 191 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L I+QR A + +T E A E+A RSRGTPR+A R L+R+RDFA V I R++A Sbjct: 192 ELSKIIQRSAGILDQPITPEGAYELAKRSRGTPRVANRFLKRIRDFATVLGDGIIDRDVA 251 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 L R+ +D +G D+LD L I + GGPVG+ET++A L E +EDL EPY++Q Sbjct: 252 LMGLKRMDVDALGLDELDRSMLRAIIEMYNGGPVGLETLAAALGEESVTLEDLCEPYLMQ 311 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 GF+ RTPRGR +A++HLG+ P Sbjct: 312 MGFLTRTPRGRCATRLAYEHLGLKAPE 338 >gi|93005515|ref|YP_579952.1| Holliday junction DNA helicase B [Psychrobacter cryohalolentis K5] gi|92393193|gb|ABE74468.1| Holliday junction DNA helicase subunit RuvB [Psychrobacter cryohalolentis K5] Length = 358 Score = 358 bits (918), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 185/312 (59%), Positives = 238/312 (76%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 DA + +RP L E+ GQ ++VFI+AA+AR EALDH L GPPGLGKTTLA ++A Sbjct: 46 DAPDANIRPALLAEYIGQPVVREQMEVFIQAARARDEALDHTLIFGPPGLGKTTLANIIA 105 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 RE+G N RSTSGPV+ +AGDLAA+LTNLE DVLFIDEIHRLS ++EEILYPAMEDFQLD Sbjct: 106 REMGGNLRSTSGPVLERAGDLAAMLTNLEAGDVLFIDEIHRLSPVIEEILYPAMEDFQLD 165 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL FY I DL TIV R Sbjct: 166 IMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYNIADLTTIVSRA 225 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A+L + ++++ A EIA R+RGTPRIA RLLRRVRD+A+V +I IA +AL LA+ Sbjct: 226 ARLMRVPMSEDGAVEIARRARGTPRIANRLLRRVRDYAQVRGDGSINGAIAGSALDMLAV 285 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D+ G D LD RY+ ++ F GGP G+E ++A ++E R +ED+IEPY+IQQG++ RT R Sbjct: 286 DRRGLDHLDRRYIEILHERFDGGPAGVEAVAAAMAEDRGTLEDVIEPYLIQQGYVLRTAR 345 Query: 316 GRLLMPIAWQHL 327 GR+L +A + Sbjct: 346 GRVLTQMAIDQM 357 >gi|317488562|ref|ZP_07947107.1| Holliday junction DNA helicase RuvB [Eggerthella sp. 1_3_56FAA] gi|316912304|gb|EFV33868.1| Holliday junction DNA helicase RuvB [Eggerthella sp. 1_3_56FAA] Length = 360 Score = 358 bits (918), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 171/312 (54%), Positives = 233/312 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ + +L + I AA+AR + +DH+LF GPPGLGKTTLA VVA ELG N Sbjct: 47 LRPKRLGDYLGQTKIKESLAILIGAAQARGDVVDHILFSGPPGLGKTTLAAVVANELGAN 106 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I + GDLAA+LTNLE+ DVLFIDEIHRL+ +VEE+LYPA+EDF LD++VG+G Sbjct: 107 IKTTSGPAIERTGDLAAILTNLEEGDVLFIDEIHRLNRMVEEVLYPALEDFALDIVVGKG 166 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS++++L RFTL+ ATTR GLLT PL+DRFGI RL +Y E+L +IV+R A + + Sbjct: 167 PAARSIRLDLPRFTLVGATTRTGLLTGPLRDRFGIAFRLQYYSPEELASIVRRSASILDV 226 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ ++ A EIA RSRGTPR+A RLL+RVRD+A+V I ++A AL +D +G D Sbjct: 227 AIEEDGALEIARRSRGTPRLANRLLKRVRDWAQVRGDGVIDEDVAAQALSFFEVDALGLD 286 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L ++A FGG PVG+ T+++ LSE D +ED+ EPY++QQG + RTP+GR+ Sbjct: 287 AVDNRILELLAVQFGGRPVGLTTLASALSEDTDTLEDVYEPYLMQQGLLVRTPKGRICTE 346 Query: 322 IAWQHLGIDIPH 333 A+ HLGI +P Sbjct: 347 RAYDHLGIKVPS 358 >gi|269837350|ref|YP_003319578.1| Holliday junction DNA helicase RuvB [Sphaerobacter thermophilus DSM 20745] gi|269786613|gb|ACZ38756.1| Holliday junction DNA helicase RuvB [Sphaerobacter thermophilus DSM 20745] Length = 348 Score = 358 bits (918), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 180/328 (54%), Positives = 241/328 (73%), Gaps = 3/328 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S + ED + + LRPR L E+ GQ + L + I+AA+AR E LDH+L GPPGL Sbjct: 5 VVSGKIRDEDEPLEASLRPRRLAEYIGQEKVKEGLLISIQAAQARGECLDHLLLYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA +VA E+GVN R TSGP I +AGDL ++LTNL+ DVLFIDEIHRL+ +VEE+L Sbjct: 65 GKTTLASIVAAEMGVNLRITSGPAIERAGDLVSILTNLKPGDVLFIDEIHRLNRVVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF +D+++G+GP+ARS+++NL FTL+ ATTR+ LLT+PL+DRFG RL FY + Sbjct: 125 YPAMEDFAVDIVLGKGPAARSMRLNLPPFTLVGATTRLALLTSPLRDRFGSTYRLEFYSL 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E ++ IV R A++ G+A+ ++ A EIA R+RGTPRIA RLLRRVRD+A+V IT ++ Sbjct: 185 EAMQKIVTRAARILGVAIDEDGAREIAARARGTPRIANRLLRRVRDYAQVRADGVITADV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AAL L +D +G D +D L I F GGPVG+ET++A SE D IED+ EPY+I Sbjct: 245 ARAALEMLEVDHLGLDDVDRVILRTIVEKFDGGPVGVETLAAATSEEADTIEDVYEPYLI 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 Q GF+QRTPRGR+ A++HL D+P+ Sbjct: 305 QLGFLQRTPRGRVATRRAYEHL--DLPY 330 >gi|298529946|ref|ZP_07017348.1| Holliday junction DNA helicase RuvB [Desulfonatronospira thiodismutans ASO3-1] gi|298509320|gb|EFI33224.1| Holliday junction DNA helicase RuvB [Desulfonatronospira thiodismutans ASO3-1] Length = 319 Score = 358 bits (918), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 175/321 (54%), Positives = 233/321 (72%), Gaps = 3/321 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N S D + RP TL++F GQ + SNLKV++ AA R LDH L G PGLGKTT+ Sbjct: 2 NSSTNDEHV---RPHTLDQFVGQEDVRSNLKVYLGAALERGLHLDHTLLYGNPGLGKTTM 58 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A+++A ELGVN T+GPV+ ++ DLAA+LTNL DVLFIDEIHR+ VEEILYPA+E Sbjct: 59 ARILAGELGVNIVCTTGPVLERSADLAAILTNLSRNDVLFIDEIHRMPATVEEILYPALE 118 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF+LDL++G+GP AR+VKI+L FTL+ ATTR+GLLT+PL+DRFG+ RL+FY E+L T Sbjct: 119 DFKLDLILGQGPGARTVKIDLEPFTLVGATTRIGLLTSPLRDRFGVICRLDFYAPEELAT 178 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV+R A++ G+ +T + A EI RSRGTPRIA RLLRRV DFA V + I ++A AL Sbjct: 179 IVERSARILGINITSDGALEIGRRSRGTPRIANRLLRRVHDFAVVGRQEVIDSQVASRAL 238 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 R+ +D +G DQ+D + L I R F GGPVG++T++ SE +ED+ EPY+IQ GF+ Sbjct: 239 KRMDVDPLGLDQMDRKILDCIIRQFAGGPVGVKTVAVACSEEVRTLEDIYEPYLIQCGFL 298 Query: 311 QRTPRGRLLMPIAWQHLGIDI 331 +RTPRGR+ P A++HL + + Sbjct: 299 KRTPRGRVATPRAYEHLNLPV 319 >gi|327398424|ref|YP_004339293.1| Holliday junction ATP-dependent DNA helicase ruvB [Hippea maritima DSM 10411] gi|327181053|gb|AEA33234.1| Holliday junction ATP-dependent DNA helicase ruvB [Hippea maritima DSM 10411] Length = 322 Score = 358 bits (918), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 167/306 (54%), Positives = 229/306 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ NL + IEAAK R EAL+H LF GPPGLGKTTLA +VA+++ N Sbjct: 10 LRPQNLNEYIGQKNIVKNLSLAIEAAKKRNEALEHCLFYGPPGLGKTTLANIVAKQMNAN 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +TSGP + K GD+AA+LTNL ++D+LFIDEIHRL+ VEE LY A+EDF+LD++VG+G Sbjct: 70 IITTSGPAVEKVGDIAAILTNLNEKDILFIDEIHRLNRAVEETLYSALEDFKLDIIVGQG 129 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+++I+L FTLI ATTR+GLLT+PL+DRFGI +RL+FY +DL IV+R A + GL Sbjct: 130 PGARTIRIDLPHFTLIGATTRIGLLTSPLRDRFGIILRLDFYSAKDLTEIVKRSASILGL 189 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA IA RSRGTPRIA +LLRRVRD +++ +I E A AL L ID+ G D Sbjct: 190 DIEEDAANLIAERSRGTPRIANKLLRRVRDLSQIESKDSIDVETAKKALSMLEIDENGLD 249 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD +Y+ + F GGPVGIET+SA + E + +ED++EPY++Q G+++RTP+GR+ P Sbjct: 250 YLDKKYILTLIEKFNGGPVGIETLSASIGEDKSTLEDVVEPYLLQIGYLKRTPKGRVATP 309 Query: 322 IAWQHL 327 +A +++ Sbjct: 310 LALKNV 315 >gi|225620634|ref|YP_002721892.1| Holliday junction DNA helicase B [Brachyspira hyodysenteriae WA1] gi|254767413|sp|C0R250|RUVB_BRAHW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|225215454|gb|ACN84188.1| Holliday junction DNA helicase B [Brachyspira hyodysenteriae WA1] Length = 346 Score = 358 bits (918), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 175/328 (53%), Positives = 231/328 (70%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD+E + + + D + +RP+ ++F GQ S LKVFI +AK R +LDH+LF G Sbjct: 1 MDKESITNAEENSYDKPNNNIRPQGFDDFLGQNNIKSKLKVFINSAKKREVSLDHILFYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLAQ++A E+G N ++TS P+I + GDLA++LT L ++D+LFIDEIHRL +V Sbjct: 61 PPGLGKTTLAQIIANEMGSNIKATSAPIIERPGDLASILTTLGEKDILFIDEIHRLRTVV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF +D+ VGEG SA+S ++ L FTLI ATTR GLL+ PL DRFGI RL Sbjct: 121 EEVLYSAMEDFFVDIKVGEGTSAKSFRVKLPHFTLIGATTRSGLLSTPLYDRFGIVERLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY EDL IV+R ++ + +TDEAA IA RSRGTPRI RLLRRV DFA V I Sbjct: 181 FYTNEDLANIVKRSSEFLNINITDEAAISIASRSRGTPRIVNRLLRRVFDFATVHDVLKI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 + A +L +L IDK GF+ LD YL I +++ GGPVG++T+S LSE + IED+IE Sbjct: 241 DEKFACDSLEKLGIDKNGFEALDKLYLNTIIKHYNGGPVGVDTLSVSLSEQIETIEDVIE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 PY+IQ GFI+RTP+GR+ A+ +L + Sbjct: 301 PYLIQCGFIKRTPKGRVATNKAYGYLNL 328 >gi|172046248|sp|Q1QCY5|RUVB_PSYCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB Length = 331 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 185/312 (59%), Positives = 238/312 (76%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 DA + +RP L E+ GQ ++VFI+AA+AR EALDH L GPPGLGKTTLA ++A Sbjct: 19 DAPDANIRPALLAEYIGQPVVREQMEVFIQAARARDEALDHTLIFGPPGLGKTTLANIIA 78 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 RE+G N RSTSGPV+ +AGDLAA+LTNLE DVLFIDEIHRLS ++EEILYPAMEDFQLD Sbjct: 79 REMGGNLRSTSGPVLERAGDLAAMLTNLEAGDVLFIDEIHRLSPVIEEILYPAMEDFQLD 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +M+GEGP+ARS+K++L FTL+AATTR GLLT+PL+DRFGI RL FY I DL TIV R Sbjct: 139 IMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYNIADLTTIVSRA 198 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A+L + ++++ A EIA R+RGTPRIA RLLRRVRD+A+V +I IA +AL LA+ Sbjct: 199 ARLMRVPMSEDGAVEIARRARGTPRIANRLLRRVRDYAQVRGDGSINGAIAGSALDMLAV 258 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D+ G D LD RY+ ++ F GGP G+E ++A ++E R +ED+IEPY+IQQG++ RT R Sbjct: 259 DRRGLDHLDRRYIEILHERFDGGPAGVEAVAAAMAEDRGTLEDVIEPYLIQQGYVLRTAR 318 Query: 316 GRLLMPIAWQHL 327 GR+L +A + Sbjct: 319 GRVLTQMAIDQM 330 >gi|317504287|ref|ZP_07962276.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella salivae DSM 15606] gi|315664599|gb|EFV04277.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella salivae DSM 15606] Length = 344 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 175/318 (55%), Positives = 231/318 (72%), Gaps = 1/318 (0%) Query: 12 VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +S E+ D + LRP +F GQ + NL++F+EAAK R E LDH L GPPGLGKTTL Sbjct: 12 ISTEEKDFENALRPLRFVDFNGQKKVVENLEIFVEAAKYRGEPLDHTLLYGPPGLGKTTL 71 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AME Sbjct: 72 SNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAME 131 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+++D+M+ +GPSARS++++L+ FTL+ ATTR G+LT PL+ RFGI + L +Y+ E LK Sbjct: 132 DYRIDIMIDKGPSARSIQLDLNPFTLVGATTRSGMLTAPLRARFGINMHLEYYDPETLKR 191 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 I++R A L + + DEAA EI+ RSRGTPRIA LLRRVRDFA+V TIT EIA L Sbjct: 192 IIRRSAMLLKVPIDDEAAIEISRRSRGTPRIANALLRRVRDFAQVKGNGTITNEIAHIGL 251 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L ID+ G D++D + L I F GGPVG+ TI+ + E +ED+ EP++I +GFI Sbjct: 252 QSLNIDQYGLDEIDNKILLTIIDKFKGGPVGVSTIATAIGEDAGTVEDVYEPFLIMEGFI 311 Query: 311 QRTPRGRLLMPIAWQHLG 328 +RTPRGR+ P+A++HLG Sbjct: 312 KRTPRGRMATPLAYEHLG 329 >gi|108804163|ref|YP_644100.1| Holliday junction DNA helicase RuvB [Rubrobacter xylanophilus DSM 9941] gi|122976014|sp|Q1AWE0|RUVB_RUBXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|108765406|gb|ABG04288.1| Holliday junction DNA helicase subunit RuvB [Rubrobacter xylanophilus DSM 9941] Length = 355 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 170/317 (53%), Positives = 232/317 (73%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E+ D LRPRTL+EF GQ NL++F+EAAK R E LDH+L GPPGLGKT+L +++ Sbjct: 35 EEDDEPTLRPRTLDEFVGQERLKENLRIFVEAAKQRGEPLDHMLLAGPPGLGKTSLCRIL 94 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GV TSGP + +AGD+AA+LT+LE+ D LFIDEIHRL+ +EE+LYPAMEDF + Sbjct: 95 AAEMGVQLHPTSGPSLERAGDMAAILTSLEEGDFLFIDEIHRLNRQIEEVLYPAMEDFAI 154 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+++G+GPSAR+++++L RFTL+ ATTR GL+T PL DRFG RL++YE +L+ IV R Sbjct: 155 DIVLGQGPSARTIRMDLPRFTLVGATTRTGLMTKPLLDRFGFSARLDYYEPHELEKIVVR 214 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A++ G+ +T+ A ++A RSRGTPR+A RLL+RVRD+A+V TI E A+AAL Sbjct: 215 NARILGVPITEGGARQLARRSRGTPRVANRLLKRVRDYAQVVGDGTIDEETANAALEMQG 274 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+ D YL++I F GGPVG+ T+S L E RD +ED+ EPY++Q G IQRT Sbjct: 275 VDHLGLDRTDREYLSLIIEKFDGGPVGVGTLSVALGEARDTVEDVYEPYLLQSGLIQRTS 334 Query: 315 RGRLLMPIAWQHLGIDI 331 RGR+ A+ HLG + Sbjct: 335 RGRVATRHAYAHLGFPV 351 >gi|325679018|ref|ZP_08158616.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 8] gi|324109522|gb|EGC03740.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 8] Length = 345 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 174/308 (56%), Positives = 229/308 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L E+ GQ + N+K++I+AAK R ++LDHVL GPPGLGKTTLA ++ARE+GVN Sbjct: 30 LRPLSLNEYIGQDKVKENMKIYIDAAKRRGDSLDHVLLYGPPGLGKTTLANIIAREMGVN 89 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP I K GDLAALL +LE DVLFIDEIHRLS VEEILYPAMED +D+++G+G Sbjct: 90 IRTTSGPAIEKPGDLAALLASLEKGDVLFIDEIHRLSRQVEEILYPAMEDCVVDIIMGKG 149 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS++++L+RFTLI ATTR G L+ PL+DRFG+ + + Y E L IV+R A + G+ Sbjct: 150 PAARSIRVDLNRFTLIGATTRSGQLSAPLRDRFGMLMHMELYTTEQLTDIVKRSATILGV 209 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 D+ A EIA R+RGTPRIA R L+RVRDFAEV ITR+IA AL R+ +D +G D Sbjct: 210 GCDDDGAEEIAGRARGTPRIANRYLKRVRDFAEVIGDGRITRDIAGLALNRMEVDSLGLD 269 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R L MI + + GGPVG+ T++A + E +ED+ EPY++Q GF+ +TPRGR+ Sbjct: 270 SLDRRLLEMIIKGYNGGPVGLATLAAAIGEEAVTLEDVCEPYLMQLGFLAKTPRGRVATQ 329 Query: 322 IAWQHLGI 329 +A+ HLGI Sbjct: 330 LAYDHLGI 337 >gi|293375247|ref|ZP_06621531.1| Holliday junction DNA helicase RuvB [Turicibacter sanguinis PC909] gi|325840657|ref|ZP_08167108.1| Holliday junction DNA helicase RuvB [Turicibacter sp. HGF1] gi|292646145|gb|EFF64171.1| Holliday junction DNA helicase RuvB [Turicibacter sanguinis PC909] gi|325490221|gb|EGC92555.1| Holliday junction DNA helicase RuvB [Turicibacter sp. HGF1] Length = 335 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 176/311 (56%), Positives = 229/311 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L ++ GQ NL++FIEAAK R E+LDHVL GPPGLGKTTLA ++A E+GVN Sbjct: 23 LRPERLNQYIGQTAVKENLRIFIEAAKNRNESLDHVLLFGPPGLGKTTLATIIANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP+I ++GDLAA+L+ LE DVLFIDEIHRL +EE+LYPAMED+ LD++VG+ Sbjct: 83 IKTTSGPMIERSGDLAAILSVLEPGDVLFIDEIHRLPKSIEEVLYPAMEDYVLDIVVGKD 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SARS++++L+ FTL+ ATTR G L+ PL+DRFG+ RL +Y E L +IV+R A + + Sbjct: 143 ESARSIRVDLAPFTLVGATTRAGDLSAPLRDRFGVINRLEYYTEEQLTSIVKRTAIVYEI 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D AA E+A RSRGTPRIA RL RRVRD+AEV IT +IA AL RL ID++G D Sbjct: 203 EMDDLAALELARRSRGTPRIANRLFRRVRDYAEVVGNGVITHDIAKLALDRLDIDELGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D +YL I FGGGP GIE I+A + E +ED+ EPY++Q GFI+RTPRGR++ P Sbjct: 263 YVDHKYLRGIIERFGGGPCGIEAIAASIGEESQTLEDVYEPYLLQMGFIKRTPRGRVITP 322 Query: 322 IAWQHLGIDIP 332 A HLGI+ P Sbjct: 323 QACHHLGIEYP 333 >gi|291545899|emb|CBL19007.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus sp. SR1/5] Length = 336 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 169/327 (51%), Positives = 242/327 (74%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ +V++ED + LRP++L+E+ GQ + LK++IEAAK R ++LDHVLF GPPGL Sbjct: 5 IITTDVTEEDFSLEGNLRPQSLDEYIGQQKTKDTLKIYIEAAKQRHDSLDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+G + + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLSAIIANEMGTHMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF +D+M+G+G SARS++++L +FTL+ ATTR GLL+ PL+DRFG+ RL FY+ Sbjct: 125 YPAMEDFAIDIMIGKGASARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVTQRLEFYDK 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++L TI+ R A++ G+ + A EIA RSRGTPR+A RLL+RVRDFA+V + IT ++ Sbjct: 185 KELTTIILRSAQVLGVEIEPNGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYNGVITYDV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +D+ G D+ D R L + NF GGPVG+ET++A + E +ED+ EPY++ Sbjct: 245 ACFALDLLEVDQYGLDKTDRRILQTLILNFQGGPVGLETLAASIGEDSGTLEDVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Q GF+ RTPRGR+ +A+ HLG P Sbjct: 305 QTGFLNRTPRGRMASVLAYTHLGYPRP 331 >gi|289450847|ref|YP_003475226.1| Holliday junction DNA helicase RuvB [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185394|gb|ADC91819.1| Holliday junction DNA helicase RuvB [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 372 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 179/319 (56%), Positives = 235/319 (73%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ED D LRP ++ GQ + +NL+VFI+AA R EALDHVL GPPGLGKTTLA + Sbjct: 48 NEDRDEPSLRPLVWSDYYGQDKVKANLQVFIQAALERNEALDHVLLYGPPGLGKTTLAGI 107 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+ N R TSGP I KAGDLAA+LTNL+ RDVLFIDEIHRL+ VEEILYPAMED Sbjct: 108 IAGEMKSNLRITSGPAIEKAGDLAAILTNLQPRDVLFIDEIHRLNHSVEEILYPAMEDRV 167 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LDLM+G+GPSARSV+++L+ FTL+ ATT+ G L+ PL+DRFG+ RL Y+++DL I++ Sbjct: 168 LDLMIGKGPSARSVRLDLAPFTLVGATTKAGNLSAPLRDRFGVINRLELYDVKDLAAILK 227 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A++ + +T+EA +A RSRGTPRIA RLLRR+RDFA+VA T+TR IA+ L L Sbjct: 228 RDAEIMHIGITEEAVTCLAERSRGTPRIAIRLLRRLRDFAQVASTSTVTRTIAENGLKAL 287 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 ID++G D+ D L I + GGPVG++TI+A E R+ IED+ EPY++Q GF+ +T Sbjct: 288 CIDELGLDETDRNILIKIIDFYHGGPVGLDTIAAITGEDRNTIEDMYEPYLMQLGFLSKT 347 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+L P A++H+ +P Sbjct: 348 PRGRVLTPAAFKHVNRPVP 366 >gi|148381021|ref|YP_001255562.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str. ATCC 3502] gi|153934214|ref|YP_001385392.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str. ATCC 19397] gi|153937310|ref|YP_001388799.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str. Hall] gi|166231483|sp|A7FY19|RUVB_CLOB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231484|sp|A5I6F1|RUVB_CLOBH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|148290505|emb|CAL84633.1| holliday junction DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152930258|gb|ABS35758.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str. ATCC 19397] gi|152933224|gb|ABS38723.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str. Hall] Length = 342 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 176/316 (55%), Positives = 232/316 (73%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ++D + LRP TL+E+ GQ + +NL +FI+AAK R E+LDHVLF GPPGLGKTTLA + Sbjct: 12 EDDREQYSLRPTTLKEYIGQKKVKANLDIFIKAAKKRNESLDHVLFYGPPGLGKTTLANI 71 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+ N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+ +EEILYPAMED+ Sbjct: 72 IANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEEILYPAMEDYA 131 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+ + FY E+L IV Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFYTDEELMEIVV 191 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + + + EAA EI RSRGTPRIA RLL+RVRD+ +V H I + A AAL L Sbjct: 192 RSAAILNVNICREAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDLQGAKAALDLL 251 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +DK G D++D + L I NF GGPVG+ET++ + E D IED+ EPY+IQ+GFI RT Sbjct: 252 EVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPYLIQKGFIMRT 311 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR+ A+ H G+ Sbjct: 312 PRGRVASEKAYNHFGV 327 >gi|160947140|ref|ZP_02094307.1| hypothetical protein PEPMIC_01072 [Parvimonas micra ATCC 33270] gi|158446274|gb|EDP23269.1| hypothetical protein PEPMIC_01072 [Parvimonas micra ATCC 33270] Length = 335 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 177/323 (54%), Positives = 231/323 (71%), Gaps = 1/323 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++ S+ED +I + LRP+ ++E+ GQ +A LK+FIEAAK R E LDH L GPPGL Sbjct: 9 IIGTGFSREDIEIETSLRPKWIDEYIGQEKAKERLKIFIEAAKTRNEPLDHSLLYGPPGL 68 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+GVN R TSGP I K DLA++LTNL DVLFIDEIHR++ VEEIL Sbjct: 69 GKTTLANIIANEMGVNIRVTSGPAIEKPSDLASILTNLSKDDVLFIDEIHRINRSVEEIL 128 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ LD+++G+GPSARS++I+L +FTLI ATTR G LT PL+DRFGI + L Y I Sbjct: 129 YPAMEDYALDIIIGKGPSARSLRIDLEKFTLIGATTRTGQLTGPLRDRFGIMLSLELYSI 188 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+L+ I+ R A + G+ + E A EIA RSRGTPRIA RLL+RVRDFA+V I + Sbjct: 189 ENLQKIITRSAGILGIEIEPEGALEIARRSRGTPRIANRLLKRVRDFAQVKRNGKIDLQT 248 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 + L L +D +G D +D + +T I NF GGPVGI+TI+A E R IED+ EPY++ Sbjct: 249 SKDGLDILEVDSLGLDTIDRKIITTIIDNFSGGPVGIDTIAASTGEERITIEDVYEPYLL 308 Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328 Q GF+ RT RGR++ A++H G Sbjct: 309 QIGFLSRTSRGRIVTEKAYKHFG 331 >gi|56421126|ref|YP_148444.1| Holliday junction DNA helicase RuvB [Geobacillus kaustophilus HTA426] gi|81819658|sp|Q5KWR0|RUVB_GEOKA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|56380968|dbj|BAD76876.1| holliday junction DNA helicase [Geobacillus kaustophilus HTA426] Length = 333 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 175/323 (54%), Positives = 235/323 (72%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 + +E A LRP+ L E+ GQ + NLKVFIEAAK R E LDHVL GPPGLGKTTLA Sbjct: 11 LGEETALEPSLRPQYLHEYIGQDKIKENLKVFIEAAKLREETLDHVLLYGPPGLGKTTLA 70 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A E+GV R+TSGP + + GDLAALLT+LE DVLFIDEIHRL VEE+LYPAMED Sbjct: 71 VIIANEMGVKLRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRAVEEVLYPAMED 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + LD+ +G+GP AR+++++L FTL+ ATTR G L+ PL+DRFG+ RL +Y ++ L I Sbjct: 131 YCLDITIGKGPDARTLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYYHVDQLAQI 190 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R A + + + EAA E+A R+RGTPRIA RLLRRVRDFA+V IT +A AL Sbjct: 191 IERAAAILQIGIEREAALELARRARGTPRIANRLLRRVRDFAQVRGEGGITLPLAVEALE 250 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 RL +D++G DQ+D + L+ + F GGPVG+ET++A + E IE++ EPY++Q G +Q Sbjct: 251 RLQVDRLGLDQIDHKLLSAMIEKFAGGPVGLETLAAVIGEEAQTIEEVYEPYLMQIGLLQ 310 Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334 RTPRGR++ P A+ HLG+++P R Sbjct: 311 RTPRGRVVTPAAYTHLGMEVPKR 333 >gi|326791464|ref|YP_004309285.1| Holliday junction ATP-dependent DNA helicase ruvB [Clostridium lentocellum DSM 5427] gi|326542228|gb|ADZ84087.1| Holliday junction ATP-dependent DNA helicase ruvB [Clostridium lentocellum DSM 5427] Length = 331 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 171/320 (53%), Positives = 238/320 (74%), Gaps = 1/320 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S ++ ED +I S +RP TL ++ GQ N+K+FIEAAK R EALDHVL GPPGL Sbjct: 5 IMSSDLQLEDNEIESNIRPLTLSDYIGQTAIKENIKIFIEAAKQRGEALDHVLLYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTT+A V+A E+GV F+ TSGP I K GD+AA+L NL+ D+LFIDEIHR+S VEE+L Sbjct: 65 GKTTMAGVIASEMGVKFKVTSGPAIEKPGDIAAILNNLQHGDILFIDEIHRMSRHVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMED+ +D++VG+GP+A+S+++ L +FTLI ATTR G+L++PL+DRFGI RL +Y + Sbjct: 125 YSAMEDYCIDIVVGKGPAAKSIRLTLPKFTLIGATTRAGMLSSPLRDRFGIIQRLEYYTM 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++L I++R A + +T+EAA E+A SRGTPR+A RLL+RVRD A + + I E+ Sbjct: 185 QELGCILKRTAAILQTPITEEAALELAKCSRGTPRVANRLLKRVRDIALIKYDNHIDEEV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AL L+ID+ G D +D R + IA F GGPVG++T++A + E RD +ED+ EPY+I Sbjct: 245 CTKALELLSIDRNGLDDIDRRIIQAIALQFKGGPVGLDTLAAAIGEERDTLEDVYEPYLI 304 Query: 306 QQGFIQRTPRGRLLMPIAWQ 325 QQG++QRTPRGR+L P A++ Sbjct: 305 QQGYMQRTPRGRMLAPKAYE 324 >gi|261418394|ref|YP_003252076.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC61] gi|319767647|ref|YP_004133148.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC52] gi|261374851|gb|ACX77594.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC61] gi|317112513|gb|ADU95005.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC52] Length = 333 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 173/313 (55%), Positives = 231/313 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + NLKVFIEAAK R E LDHVL GPPGLGKTTLA ++A E+GV Sbjct: 21 LRPQYLHEYIGQDKIKENLKVFIEAAKLREETLDHVLLYGPPGLGKTTLAVIIANEMGVK 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP + + GDLAALLT+LE DVLFIDEIHRL VEE+LYPAMED+ LD+ +G+G Sbjct: 81 LRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRAVEEVLYPAMEDYCLDIAIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+++++L FTL+ ATTR G L+ PL+DRFG+ RL +Y ++ L I++R A + + Sbjct: 141 PDARTLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYYHVDQLAQIIERAAAILQI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A R+RGTPRIA RLLRRVRDFA+V IT +A AL RL +D++G D Sbjct: 201 GIEREAALELARRARGTPRIANRLLRRVRDFAQVRGEGGITLPLAVEALERLQVDRLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + L+ + F GGPVG+ET++A + E IE++ EPY++Q G +QRTPRGR++ P Sbjct: 261 QIDHKLLSAMIEKFAGGPVGLETLAAVIGEEAQTIEEVYEPYLMQIGLLQRTPRGRVVTP 320 Query: 322 IAWQHLGIDIPHR 334 A+ HLG+++P R Sbjct: 321 AAYTHLGMEVPKR 333 >gi|238916874|ref|YP_002930391.1| Holliday junction DNA helicase RuvB [Eubacterium eligens ATCC 27750] gi|238872234|gb|ACR71944.1| Holliday junction DNA helicase RuvB [Eubacterium eligens ATCC 27750] Length = 337 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 171/323 (52%), Positives = 238/323 (73%), Gaps = 1/323 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S +++ED I + LRP +L+++ GQ + SNLKV+IEAAK R EALDHVLF GPPGL Sbjct: 9 IISTQITEEDYGIENSLRPLSLDDYVGQNKVKSNLKVYIEAAKERGEALDHVLFYGPPGL 68 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+GVN + TSGP I K GD+AA+L NL + D+LF+DEIHRL+ VEE+L Sbjct: 69 GKTTLAGIIANEMGVNIKVTSGPAIEKPGDMAAILNNLSEGDILFVDEIHRLNRQVEEVL 128 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+++D+M+G+G +ARS+++ L +FTLI ATTR GLL+ PL+DRFG+ + FY + Sbjct: 129 YPAMEDYKIDIMIGKGATARSIRLELPQFTLIGATTRAGLLSAPLRDRFGVVSHMEFYTV 188 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+ I+ R A + + + + A E+A RSRGTPR+A RLL+RVRDFA+V + I +++ Sbjct: 189 PELEKIIIRSANVLNVDIDSDGAHELARRSRGTPRLANRLLKRVRDFAQVKYNGHINKDV 248 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AD AL L +D+ G D+ D LT I F GGPVGIET++A + E +ED+ EPY+I Sbjct: 249 ADYALNLLDVDRDGLDRNDRVILTTIVDKFDGGPVGIETLAASIGEDSGTLEDVYEPYLI 308 Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328 Q G+I RTPRGR+ A+ +LG Sbjct: 309 QNGYINRTPRGRVATKAAYDNLG 331 >gi|302344654|ref|YP_003809183.1| Holliday junction DNA helicase RuvB [Desulfarculus baarsii DSM 2075] gi|301641267|gb|ADK86589.1| Holliday junction DNA helicase RuvB [Desulfarculus baarsii DSM 2075] Length = 340 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 180/323 (55%), Positives = 234/323 (72%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+ ++ED + LRP +L EF GQ EA +NL+VFI AA+ R EALDHVL G PGLG Sbjct: 10 LVCGAAAEEDRALDSLRPTSLAEFVGQEEAKANLRVFIAAARQRGEALDHVLLHGHPGLG 69 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++ARELGV +TSGPV+ +AGDLAA+LTNL RDVLF+DEIHRL+ +VEE+LY Sbjct: 70 KTTLAHIIARELGVEVTATSGPVLERAGDLAAILTNLGPRDVLFVDEIHRLNHVVEEVLY 129 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMEDF LD++VG+GPSAR+VK+NL FTL+ ATTR GLLT PL+DRFG+ +R++ Y E Sbjct: 130 PAMEDFHLDIVVGQGPSARTVKLNLEPFTLVGATTRAGLLTPPLRDRFGVQVRVDMYTPE 189 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L +IV R A+L GL ++ E A EIA RSR TPR+A RLL+RVRDFA+V A + Sbjct: 190 ELASIVGRSARLLGLDISPEGAAEIARRSRATPRVANRLLKRVRDFAQVEAAGHADLALC 249 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL RL +D+ G D+LD L+ I + F GGPVG+ ++A + E IE++ EPY+IQ Sbjct: 250 DYALGRLGVDQNGLDRLDRDLLSAIVQKFDGGPVGLSNLAAAVGEEAQTIEEVYEPYLIQ 309 Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329 QG ++RT GR+ A + G Sbjct: 310 QGLLKRTKAGRVATGRALELFGF 332 >gi|220904536|ref|YP_002479848.1| Holliday junction DNA helicase RuvB [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868835|gb|ACL49170.1| Holliday junction DNA helicase RuvB [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 327 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 171/306 (55%), Positives = 232/306 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+LE+F GQ + +NL+V+++AA+ R +ALDH LF G PGLGKTTLAQ++A ELGVN Sbjct: 17 VRPRSLEDFIGQDDLRANLRVYLDAARERGKALDHTLFYGNPGLGKTTLAQIMATELGVN 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGPV+ ++GDLAA+LTNL D+LF+DEIHR+ I VEE+LYPAMEDF+LDL++G+G Sbjct: 77 LVCTSGPVLERSGDLAAILTNLGSHDILFVDEIHRMPIAVEEVLYPAMEDFKLDLVIGQG 136 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+VKI+L FTL+ ATTR+GL+++PL+DRFGI RL +Y DL +VQR A++ G+ Sbjct: 137 PAARTVKIDLEPFTLVGATTRMGLISSPLRDRFGIVARLEYYSSADLARVVQRTARILGV 196 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T + A EI RSRGTPRIA RLLRRVRDFA V + A AL R+ +D+ G D Sbjct: 197 TITPDGAEEIGRRSRGTPRIANRLLRRVRDFALVHGNGQVNGHEASVALKRMDVDEHGLD 256 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + L ++ +++ GGPVGI+T++ SE IED+ EPY+IQ GF++RTPRGR+ Sbjct: 257 QMDRKLLEVLIKHYDGGPVGIKTLAVACSEEVRTIEDIYEPYLIQCGFLKRTPRGRMATA 316 Query: 322 IAWQHL 327 A+ HL Sbjct: 317 RAYTHL 322 >gi|71065276|ref|YP_264003.1| Holliday junction DNA helicase RuvB [Psychrobacter arcticus 273-4] gi|97190239|sp|Q4FTT9|RUVB_PSYA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|71038261|gb|AAZ18569.1| Holliday junction DNA helicase RuvB [Psychrobacter arcticus 273-4] Length = 331 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 185/312 (59%), Positives = 237/312 (75%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 DA + +RP L E+ GQ ++VFI+AA+AR EALDH L GPPGLGKTTLA ++A Sbjct: 19 DAPDANIRPALLAEYIGQPVVREQMEVFIQAARARDEALDHTLIFGPPGLGKTTLANIIA 78 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 RE+G N RSTSGPV+ +AGDLAA+LTNLE DVLFIDEIHRLS ++EEILYPAMEDFQLD Sbjct: 79 REMGGNLRSTSGPVLERAGDLAAMLTNLEAGDVLFIDEIHRLSPVIEEILYPAMEDFQLD 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +M+GEGP+ARS+K+ L FTL+AATTR GLLT+PL+DRFGI RL FY I DL TIV R Sbjct: 139 IMIGEGPAARSIKLELPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYNIADLTTIVSRA 198 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A+L + ++++ A EIA R+RGTPRIA RLLRRVRD+A+V +I IA +AL LA+ Sbjct: 199 ARLMRVPMSEDGAVEIARRARGTPRIANRLLRRVRDYAQVRGDGSINGAIAGSALDMLAV 258 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D+ G D LD RY+ ++ F GGP G+E ++A ++E R +ED+IEPY+IQQG++ RT R Sbjct: 259 DRRGLDHLDRRYIEILHERFDGGPAGVEAVAAAMAEDRGTLEDVIEPYLIQQGYVLRTAR 318 Query: 316 GRLLMPIAWQHL 327 GR+L +A + Sbjct: 319 GRVLTQMAIDQM 330 >gi|257790729|ref|YP_003181335.1| Holliday junction DNA helicase RuvB [Eggerthella lenta DSM 2243] gi|257474626|gb|ACV54946.1| Holliday junction DNA helicase RuvB [Eggerthella lenta DSM 2243] Length = 351 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 171/312 (54%), Positives = 233/312 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ + +L + IEAA+AR + +DH+LF GPPGLGKTTLA VVA EL N Sbjct: 38 LRPKRLGDYLGQTKIKESLAILIEAAQARGDVVDHILFSGPPGLGKTTLAAVVANELDAN 97 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I + GDLAA+LTNLE+ DVLFIDEIHRL+ +VEE+LYPA+EDF LD++VG+G Sbjct: 98 LKTTSGPAIERTGDLAAILTNLEEGDVLFIDEIHRLNRMVEEVLYPALEDFALDIVVGKG 157 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS++++L RFTL+ ATTR GLLT PL+DRFGI RL +Y E+L +IV+R A + + Sbjct: 158 PAARSIRLDLPRFTLVGATTRTGLLTGPLRDRFGIAFRLQYYSPEELASIVRRSASILDV 217 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ ++ A EIA RSRGTPR+A RLL+RVRD+A+V I ++A AL +D +G D Sbjct: 218 AIEEDGALEIARRSRGTPRLANRLLKRVRDWAQVRGDGVIDEDVAAQALSFFEVDALGLD 277 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L ++A FGG PVG+ T+++ LSE D +ED+ EPY++QQG + RTP+GR+ Sbjct: 278 AVDNRILELLAVQFGGRPVGLTTLASALSEDTDTLEDVYEPYLMQQGLLVRTPKGRICTE 337 Query: 322 IAWQHLGIDIPH 333 A+ HLGI +P Sbjct: 338 RAYDHLGIKVPS 349 >gi|299136384|ref|ZP_07029568.1| Holliday junction DNA helicase RuvB [Acidobacterium sp. MP5ACTX8] gi|298602508|gb|EFI58662.1| Holliday junction DNA helicase RuvB [Acidobacterium sp. MP5ACTX8] Length = 376 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 175/331 (52%), Positives = 244/331 (73%), Gaps = 1/331 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E L+S ++D+ L LRP+ L EF GQ +A L + +EAAK+R EALDHVL GPP Sbjct: 41 ERLVSAGQVEDDSAFELKLRPKWLAEFIGQEKAKEQLAIALEAAKSRGEALDHVLLFGPP 100 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A ELGV ++ TSGP + GDL A+LTNL +R VLF+DEIHRL ++EE Sbjct: 101 GLGKTTLATIIANELGVGYQQTSGPALQIQGDLTAILTNLRERQVLFLDEIHRLQPVLEE 160 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 LY A+ED+Q+D+++G+GP+AR+ + + FT +AATTR GLL++PL+ RFGI +RL FY Sbjct: 161 KLYTALEDYQMDIIIGQGPAARTHTLEIKPFTFVAATTRPGLLSSPLRSRFGILLRLEFY 220 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++L+ +V+R A++ G+ + + A EIAMRSRGTPRIA RLLRRVRD+A+V + I R Sbjct: 221 TDDELRFVVERSAEVLGVPIDRDGAAEIAMRSRGTPRIANRLLRRVRDYAQVRASGKIDR 280 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 E A AAL L +D GFD+LD R L I + GGPVG+ T++A L+E +DA+E++ EP+ Sbjct: 281 ETAMAALKMLEVDAHGFDELDRRLLRTIIEKYDGGPVGLNTLAAALAEEQDALEEVYEPF 340 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 +IQ GF+ RTPRGR+ +A++HLGI++P + Sbjct: 341 LIQIGFLDRTPRGRVATRLAYEHLGIEMPRK 371 >gi|23099491|ref|NP_692957.1| Holliday junction DNA helicase B [Oceanobacillus iheyensis HTE831] gi|33301657|sp|Q8EPQ6|RUVB_OCEIH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|22777720|dbj|BAC13992.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831] Length = 334 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 180/330 (54%), Positives = 238/330 (72%), Gaps = 3/330 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++ + +D +I L LRP TL ++ GQ + NL +FI+AAK R E LDHVL Sbjct: 1 MDDR--MIDGELQDQDVEIELSLRPSTLSQYIGQDKVKENLTIFIQAAKMREEPLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +++ E+GV FRSTSGP I +AGDLAA+L++LE DVLFIDE+HRL Sbjct: 59 YGPPGLGKTTLASIISYEMGVQFRSTSGPAIERAGDLAAILSSLEPGDVLFIDEVHRLPR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LY AMEDF +D+++G GPSARSV+I+L FTL+ ATTR GLL+ PL+DRFG+ R Sbjct: 119 SVEEVLYAAMEDFFIDIVIGTGPSARSVRIDLPPFTLVGATTRAGLLSAPLRDRFGVLSR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +YEI+DL IV+R A + + ++ EAA E+A RSRGTPRIA RLL+RVRD ++V + Sbjct: 179 LEYYEIKDLCNIVERTADIFNMPISSEAAIEVARRSRGTPRIANRLLKRVRDISQVKGEE 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ E AL L +D G D +D + LT I F GGPVG++TI+A + E IE++ Sbjct: 239 EISLESTKQALEMLQVDDAGLDHVDHKLLTGIIEGFSGGPVGLDTIAATIGEESQTIEEV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EP+++Q GFIQRTPRGR++ A+ HLGI Sbjct: 299 YEPFLLQLGFIQRTPRGRVITSKAYDHLGI 328 >gi|159898816|ref|YP_001545063.1| Holliday junction DNA helicase RuvB [Herpetosiphon aurantiacus ATCC 23779] gi|159891855|gb|ABX04935.1| Holliday junction DNA helicase RuvB [Herpetosiphon aurantiacus ATCC 23779] Length = 354 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 176/312 (56%), Positives = 226/312 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + +NLK+ I AAK R E LDH LF GPPGLGKTTL+ ++A E+GVN Sbjct: 27 LRPKKLAEYIGQEKVLANLKIAIAAAKQRKEPLDHTLFYGPPGLGKTTLSTILANEMGVN 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I +AGDLAA+LTNL+ D+LFIDE+HRL+ VEE++YPAMEDF LD++VG+G Sbjct: 87 IKITSGPAIERAGDLAAILTNLKKDDLLFIDEVHRLNRAVEEVMYPAMEDFALDIIVGKG 146 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR++++ L RFT++ ATTR+ LLT+PL+DRFG RL FY +E + IV+R A L Sbjct: 147 PSARNLRLKLPRFTVVGATTRLALLTSPLRDRFGSVHRLEFYSLEAMTDIVRRSAALLKS 206 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D A EIA R+RGTPR+ RLLRRVRDFA V IT E+A AAL L ID +G D Sbjct: 207 PMDDAGALEIARRARGTPRVVNRLLRRVRDFALVMADNHITLEVAQAALASLEIDDLGLD 266 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D R L + F GGPVG+ T++A +E DAIED+ EPY++Q GFIQRTPRGR+ Sbjct: 267 ENDRRVLRTLIETFNGGPVGLTTLAAATAEEVDAIEDVYEPYLLQLGFIQRTPRGRIATR 326 Query: 322 IAWQHLGIDIPH 333 A+ HLG+ P Sbjct: 327 RAYDHLGLSFPE 338 >gi|323486644|ref|ZP_08091965.1| hypothetical protein HMPREF9474_03716 [Clostridium symbiosum WAL-14163] gi|323692210|ref|ZP_08106453.1| Holliday junction DNA helicase RuvB [Clostridium symbiosum WAL-14673] gi|323400025|gb|EGA92402.1| hypothetical protein HMPREF9474_03716 [Clostridium symbiosum WAL-14163] gi|323503784|gb|EGB19603.1| Holliday junction DNA helicase RuvB [Clostridium symbiosum WAL-14673] Length = 329 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 173/324 (53%), Positives = 239/324 (73%), Gaps = 1/324 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ +++ED I S LRP+ L+E+ GQ + S LKVFI+AAK+R EALDHVLF GPPGL Sbjct: 5 IITTEITEEDKRIESSLRPQYLDEYIGQEKIKSTLKVFIDAAKSRGEALDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL ++A E+GV + TSGP I K G++AA+L L++ DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLCGIIANEMGVKMKVTSGPAIEKPGEIAAILNGLQEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+M+G+ +ARS+++ L +FTL+ ATTR GLLT PL+DRFGI +++FY Sbjct: 125 YPAMEDYAIDIMLGKDSTARSIRLELPKFTLVGATTRAGLLTAPLRDRFGIIQKMDFYMP 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LKTI+ R A + + + + A EIA RSRGTPR+A RLL+RVRDFA+V + IT+E+ Sbjct: 185 EELKTIILRSAGVMKVEIDERGAYEIARRSRGTPRLANRLLKRVRDFAQVKYEGVITKEV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AD AL L +DK+G D D LT++ F GGPVG++T++A L E +ED+ EPY++ Sbjct: 245 ADFALDILDVDKLGLDNNDRAILTIMIEKFSGGPVGLDTLAAALGEDSGTLEDVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 GFI RTPRGR+ A+ HLG+ Sbjct: 305 MNGFINRTPRGRVATEAAYHHLGL 328 >gi|266625273|ref|ZP_06118208.1| holliday junction DNA helicase RuvB [Clostridium hathewayi DSM 13479] gi|288862828|gb|EFC95126.1| holliday junction DNA helicase RuvB [Clostridium hathewayi DSM 13479] Length = 331 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 173/326 (53%), Positives = 239/326 (73%), Gaps = 1/326 (0%) Query: 7 LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ V++ED LRP++L E+ GQ + +NLKV+I+AAKAR E+LDHVLF GPPGL Sbjct: 5 IITTEVTEEDKRTEPNLRPQSLNEYIGQEKLKANLKVYIDAAKARGESLDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLSGIIANEMGVNMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+M+G+ +ARS++++L RFTL+ ATTR GLLT PL+DRFG+ ++ FY Sbjct: 125 YPAMEDYAIDIMLGKDSAARSIRLDLPRFTLVGATTRAGLLTAPLRDRFGVVQKMEFYTP 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++L+ IV AK+ + + E A EIA RSRGTPR+A RLL+RVRDFA+V + IT+E+ Sbjct: 185 KELEIIVCHSAKVLEVEIEPEGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYHGVITKEV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AD AL L +DK G D D LT + F GGPVG+ET++A L E +ED+ EPY++ Sbjct: 245 ADFALDILDVDKFGLDNNDRAILTTMIEKFSGGPVGLETLAASLGEDAGTLEDVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331 GFI RTPRGR+ A+ HLG+ + Sbjct: 305 MNGFINRTPRGRVATERAYHHLGLTL 330 >gi|298372128|ref|ZP_06982118.1| holliday junction DNA helicase RuvB [Bacteroidetes oral taxon 274 str. F0058] gi|298275032|gb|EFI16583.1| holliday junction DNA helicase RuvB [Bacteroidetes oral taxon 274 str. F0058] Length = 338 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 180/318 (56%), Positives = 230/318 (72%), Gaps = 1/318 (0%) Query: 12 VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +++ DADI LRP +F GQ + NL VF+EAAK RAE+LDHVL GPPGLGKTTL Sbjct: 9 ITKSDADIEKALRPLVFADFNGQGKIVENLSVFVEAAKMRAESLDHVLLHGPPGLGKTTL 68 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + ++A ELGV + TSGPV+ K GDLA LLT+LE DVLFIDEIHRLS IVEE LY AME Sbjct: 69 SAIIANELGVGLKMTSGPVLDKPGDLAGLLTSLEKNDVLFIDEIHRLSPIVEEYLYSAME 128 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF++D+M+ +GPSARS++I+L FTL+ ATTR GLLT+PL+ RFGI +Y+ L+ Sbjct: 129 DFRIDIMIDKGPSARSIQIDLEPFTLVGATTRSGLLTSPLRARFGINCHFEYYDESILRG 188 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R AKL G+ + EAA EIA+RSRGTPR+A LLRRVRDFA+V I I +L Sbjct: 189 IVLRSAKLLGVGCSQEAAGEIALRSRGTPRVANALLRRVRDFAQVRGNGDIDLTITKYSL 248 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L IDK G D++D + L + F GGPVG+ TI+ L E IE++ EP++I++GFI Sbjct: 249 EALNIDKYGLDEIDNKILLTVIDKFHGGPVGLNTIATALGEDAGTIEEVYEPFLIKEGFI 308 Query: 311 QRTPRGRLLMPIAWQHLG 328 +RTPRGR +MP+A++HLG Sbjct: 309 KRTPRGREVMPLAYEHLG 326 >gi|163848629|ref|YP_001636673.1| Holliday junction DNA helicase RuvB [Chloroflexus aurantiacus J-10-fl] gi|222526564|ref|YP_002571035.1| Holliday junction DNA helicase RuvB [Chloroflexus sp. Y-400-fl] gi|189046024|sp|A9WHF8|RUVB_CHLAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767419|sp|B9LBR4|RUVB_CHLSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|163669918|gb|ABY36284.1| Holliday junction DNA helicase RuvB [Chloroflexus aurantiacus J-10-fl] gi|222450443|gb|ACM54709.1| Holliday junction DNA helicase RuvB [Chloroflexus sp. Y-400-fl] Length = 350 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 181/334 (54%), Positives = 239/334 (71%), Gaps = 1/334 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M E L++ + +D + LRPRTL EF GQ + L++ I AA+ R E+LDH LF Sbjct: 1 MSAERLVNPHSDSDDQQVEKSLRPRTLSEFIGQEKVVEQLRIAIAAARGRNESLDHTLFY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT+LA VVA E+G + TSGP I +AGDLAA+LTNL+ DVLFIDE+HRL+ Sbjct: 61 GPPGLGKTSLANVVANEMGAKIKITSGPAIERAGDLAAILTNLQANDVLFIDEVHRLNRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LDL+VG+GP ARS+++NL RFT+I ATTR+ LLT+PL+DRF RL Sbjct: 121 VEEVLYPAMEDFALDLVVGKGPGARSLRLNLPRFTVIGATTRLALLTSPLRDRFVAVHRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY + + IV R A++ G+ ++ E A EI R+RGTPRIA R+LRRVRD+A+V Sbjct: 181 VFYSDDAMTEIVSRSARILGVPISPEGAREIGRRARGTPRIANRILRRVRDYAQVVADGA 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT ++A AL +L ID++G D+ D R L I F GGPVG+ T++A L+E DAIED+ Sbjct: 241 ITLQVARDALAQLEIDELGLDENDRRLLRAIIELFNGGPVGLSTLAAALAEEVDAIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EP+++Q GF+QRTPRGR+ A++HLG+ P R Sbjct: 301 EPFLLQLGFLQRTPRGRIATRRAYEHLGLPYPER 334 >gi|57234581|ref|YP_181348.1| Holliday junction DNA helicase B [Dehalococcoides ethenogenes 195] gi|97190018|sp|Q3Z8V1|RUVB_DEHE1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|57225029|gb|AAW40086.1| Holliday junction DNA helicase RuvB [Dehalococcoides ethenogenes 195] Length = 349 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 179/331 (54%), Positives = 237/331 (71%), Gaps = 1/331 (0%) Query: 3 DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++E L+S ++ +DA + + LRPR L +F GQ NL V I+AAK R EALDHVL G Sbjct: 4 EKERLISGKLAADDAKLDTSLRPRCLSDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYG 63 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL+ D+LFIDEIHRLS V Sbjct: 64 PPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHRLSRNV 123 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMED+ LD+MVG+GP ARS+++ L FTLI ATTR +L+ PL+DRFG RL+ Sbjct: 124 EEVLYPAMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLD 183 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY+ + + IV R A + G+ + +IA RSRGTPR+A RLLRRVRD+A+V I Sbjct: 184 FYDEDAIHDIVSRSAHILGVEAEENGIRQIACRSRGTPRVANRLLRRVRDYAQVKGNGLI 243 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T ++A +L L +D++G D++D + L I FGGGPVG+ETI+A +SE D I D+ E Sbjct: 244 TGDMAAESLACLEVDRLGLDEIDHKVLKTIIHKFGGGPVGLETIAAAISEEADTIMDVYE 303 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY++Q GF++RTPRGR +A+QHL I P Sbjct: 304 PYLLQLGFLERTPRGRQATRLAYQHLNIPYP 334 >gi|310822968|ref|YP_003955326.1| holliday junction ATP-dependent DNA helicase ruvb [Stigmatella aurantiaca DW4/3-1] gi|309396040|gb|ADO73499.1| Holliday junction ATP-dependent DNA helicase RuvB [Stigmatella aurantiaca DW4/3-1] Length = 359 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 174/306 (56%), Positives = 226/306 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRT EE+ GQ LKV++ AA R +ALDH LF GPPGLGKT+LA ++A ELGV Sbjct: 40 LRPRTFEEYVGQDAVVEKLKVYVRAAGQRRDALDHCLFSGPPGLGKTSLAHIIASELGVG 99 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGP + + GDLA LLTNL +RDVLFIDEIHRL+ VEE LYPAMEDF+LD+ + G Sbjct: 100 IHVTSGPALERKGDLAGLLTNLNERDVLFIDEIHRLNAAVEEYLYPAMEDFRLDITIDTG 159 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR++KI+L FTLI ATTR GLLT+PL+DRF I RL++YE + L+ I+ R A++ G+ Sbjct: 160 PAARAMKIDLPPFTLIGATTRTGLLTSPLRDRFQIQERLDYYEPKYLEMILNRSARILGV 219 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +A+ EI+ RSRGTPRI+ RLLRR+RDFA+V ITRE+A +L RL +D G D Sbjct: 220 PLERDASKEISTRSRGTPRISNRLLRRLRDFAQVEGEGHITRELARVSLDRLGVDASGLD 279 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I FGGGPVG+ETI+A + E RD+IED+ EPY++Q+GF+QRTPRGR+ Sbjct: 280 SMDRKILLTIIDKFGGGPVGVETIAASVGEQRDSIEDVYEPYLLQEGFLQRTPRGRMATH 339 Query: 322 IAWQHL 327 A+ + Sbjct: 340 RAYGYF 345 >gi|205374299|ref|ZP_03227098.1| Holliday junction DNA helicase B [Bacillus coahuilensis m4-4] Length = 332 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 175/311 (56%), Positives = 228/311 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ + NL++FIEAAK R E LDHVL GPPGLGKTTLA V+A E+GVN Sbjct: 21 LRPQFLRQYIGQDKVKHNLQIFIEAAKLREECLDHVLLYGPPGLGKTTLAAVIANEMGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP I + GDLAA+LT LE DVLFIDEIHRL +EE+LYPAMEDF LD+++G+G Sbjct: 81 LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLPRSIEEVLYPAMEDFCLDIVIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV+++L FTL+ ATTR G ++ PL+DRFG+ RL +Y E LK IV R A++ Sbjct: 141 PSARSVRLDLPPFTLVGATTRAGAISAPLRDRFGVLCRLEYYTEEQLKDIVVRTAEILDT 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++T A E+A RSRGTPRIA RLLRRVRDFA+V IT E+A AL L +DK G D Sbjct: 201 SITSTGAIEMARRSRGTPRIANRLLRRVRDFAQVKGDGEITSELASQALELLQVDKKGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + I F GGPVG++T++A + E D IED+ EPY++Q GF+QRTPRGR++ Sbjct: 261 HIDHKLILSIMDRFKGGPVGLDTMAASIGEESDTIEDVYEPYLLQIGFLQRTPRGRMVTN 320 Query: 322 IAWQHLGIDIP 332 +A++H ++P Sbjct: 321 LAYEHFDREVP 331 >gi|160879482|ref|YP_001558450.1| Holliday junction DNA helicase B [Clostridium phytofermentans ISDg] gi|189046027|sp|A9KP49|RUVB_CLOPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|160428148|gb|ABX41711.1| Holliday junction DNA helicase RuvB [Clostridium phytofermentans ISDg] Length = 336 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 170/324 (52%), Positives = 239/324 (73%), Gaps = 1/324 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ + +ED + + LRP+ LE++ GQ +A NLKV+IEAAK R E+LDHVLF GPPGL Sbjct: 5 MITTELMEEDVKLETSLRPQMLEDYIGQKKAKENLKVYIEAAKQRKESLDHVLFFGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+GVN ++T+GP I K GD+AA+L NL++ DVLFIDEIHRL+ VEE+L Sbjct: 65 GKTTLAGIIANEMGVNLKTTAGPAIEKPGDMAAILNNLQEGDVLFIDEIHRLNRQVEELL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+++G+G +A+S++++L RFTL+ ATTR G+LT PL+DRFG+ RL FY Sbjct: 125 YPAMEDYVIDIVIGKGATAKSIRLDLPRFTLVGATTRAGMLTAPLRDRFGVVHRLEFYTT 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LK I+ R AK+ + + D A E+A RSRGTPR+A RLL+RVRDFA+V + IT E+ Sbjct: 185 EELKEIITRSAKVLQVEIDDCGATELARRSRGTPRLANRLLKRVRDFAQVKYDGRITEEV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +DK+G D +D + L + F GGPVGI+ I+ + E +E++ EPY++ Sbjct: 245 ARFALDILEVDKLGLDHIDRQILVTMIEKFAGGPVGIDAIATTIGEDSGTVEEVYEPYLV 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 Q G I RTPRGR++ A+ H G+ Sbjct: 305 QNGLILRTPRGRVVTQEAYLHCGL 328 >gi|255281766|ref|ZP_05346321.1| holliday junction DNA helicase RuvB [Bryantella formatexigens DSM 14469] gi|255267833|gb|EET61038.1| holliday junction DNA helicase RuvB [Bryantella formatexigens DSM 14469] Length = 337 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 172/329 (52%), Positives = 237/329 (72%), Gaps = 1/329 (0%) Query: 7 LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++ V +EDA I LRP+TL+E+ GQ +A NLK++IEAAK R ++LDHVLF GPPGL Sbjct: 5 IIETEVMEEDARIEPSLRPKTLDEYIGQEKAKQNLKIYIEAAKQRGDSLDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLAGIIANEMGVNMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+M+G+G +ARS+++ L RFTL+ ATTR GLLT PL+DRFG+ L +Y + Sbjct: 125 YPAMEDYAIDIMIGKGATARSIRLELPRFTLVGATTRAGLLTAPLRDRFGVIHHLEYYTV 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+L TI+ AK G+ + A E+A RSRGTPR+A RLL+RVRDFA+V + IT++I Sbjct: 185 EELSTIICHSAKALGVEIDAGGAEELAKRSRGTPRLANRLLKRVRDFAQVKYDGNITKDI 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +D+ G D D L + F GGPVG++T++A + E IED+ EPY++ Sbjct: 245 ACFALDLLEVDRYGLDVTDRNLLLTLIEKFSGGPVGLDTLAATIGEDAGTIEDVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 + GFI RTPRGR+ A+ HL + + + Sbjct: 305 KNGFINRTPRGRVATEKAYHHLNLQLQEK 333 >gi|219847790|ref|YP_002462223.1| Holliday junction DNA helicase RuvB [Chloroflexus aggregans DSM 9485] gi|254767418|sp|B8G5S6|RUVB_CHLAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|219542049|gb|ACL23787.1| Holliday junction DNA helicase RuvB [Chloroflexus aggregans DSM 9485] Length = 350 Score = 356 bits (914), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 182/334 (54%), Positives = 237/334 (70%), Gaps = 1/334 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M E L++ + +D + LRPRTL EF GQ + L++ I AA+ R EALDH LF Sbjct: 1 MSAERLVNPHSDSDDQQVEKSLRPRTLSEFIGQEKVVEQLRIAIAAARGRNEALDHTLFY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT+LA VVA E+G + TSGP I +AGDLAA+LTNL+ DVLFIDE+HRL+ Sbjct: 61 GPPGLGKTSLANVVANEMGAKIKITSGPAIERAGDLAAILTNLQPNDVLFIDEVHRLNRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LDL+VG+GP ARS+++NL RFT+I ATTR+ LLT+PL+DRF RL Sbjct: 121 VEEVLYPAMEDFALDLVVGKGPGARSLRLNLPRFTVIGATTRLALLTSPLRDRFVAVHRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY + IV R A++ G+ ++ E A EI R+RGTPRIA R+LRRVRD+A+V Sbjct: 181 VFYSDAAMTEIVSRSARILGVPISPEGAREIGRRARGTPRIANRILRRVRDYAQVVANGE 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT +A AL +L ID++G D+ D R L I F GGPVG+ T++A L+E DAIED+ Sbjct: 241 ITLAVAREALAQLEIDELGLDENDRRLLRAIIELFNGGPVGLNTLAAALAEEVDAIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EP+++Q GF+QRTPRGR+ A++HLG+ P R Sbjct: 301 EPFLLQLGFLQRTPRGRVATRRAYEHLGLPFPER 334 >gi|304440232|ref|ZP_07400122.1| crossover junction ATP-dependent DNA helicase RuvB [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371281|gb|EFM24897.1| crossover junction ATP-dependent DNA helicase RuvB [Peptoniphilus duerdenii ATCC BAA-1640] Length = 338 Score = 356 bits (914), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 182/330 (55%), Positives = 237/330 (71%), Gaps = 3/330 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR L+ N S ED S +RP+ + E+ GQ +A LK+FIEAAK R E+LDHVL Sbjct: 1 MEDR--LVEPNFSPSEDILESGIRPKWISEYIGQDKAKEKLKIFIEAAKNRNESLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GVN + TSGP I + GDLA++LTNL++ DVLFIDEIHR++ Sbjct: 59 NGPPGLGKTTLAGIIANEMGVNIKVTSGPAIERPGDLASILTNLQEDDVLFIDEIHRINK 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEILY AMEDF LD++VG+GPSARS++++LS+FTLI ATTR G LTNPL+DRFG+ + Sbjct: 119 SVEEILYSAMEDFALDIIVGKGPSARSIRLDLSKFTLIGATTRAGSLTNPLRDRFGVILN 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L Y+ E L+ I+ R +K+ + + A IA RSRGTPRIA RLL+RVRD+AEV Sbjct: 179 LELYDNEALENIILRSSKILNIPIEKNGAKMIAKRSRGTPRIANRLLKRVRDYAEVKENG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT ++A+ L L ID+ G D LD R + ++ N+GG PVGI+ I+A + E R IED Sbjct: 239 IITEDVANRGLDLLEIDEYGLDSLDRRIIEVMIINYGGRPVGIDAIAASVGEERVTIEDA 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GFI RTPRGR+ +A+ HL I Sbjct: 299 YEPYLLQIGFINRTPRGRMPTKLAYDHLNI 328 >gi|332799128|ref|YP_004460627.1| Holliday junction ATP-dependent DNA helicase ruvB [Tepidanaerobacter sp. Re1] gi|332696863|gb|AEE91320.1| Holliday junction ATP-dependent DNA helicase ruvB [Tepidanaerobacter sp. Re1] Length = 332 Score = 356 bits (914), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 179/306 (58%), Positives = 227/306 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + E+ GQ NL+VFI+AA R EALDHVL GPPGLGKTTLA ++ARELGVN Sbjct: 22 IRPLSFNEYVGQDRVKENLQVFIKAALMRREALDHVLLFGPPGLGKTTLAYIIARELGVN 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I +AGDLAA+LTNL +RD+LFIDEIHRL VEEILYPAMEDF LD+MVG+G Sbjct: 82 IRITSGPAIERAGDLAAILTNLGNRDLLFIDEIHRLHPSVEEILYPAMEDFALDIMVGKG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS+++NLS FTL+ ATT+ G LT+PL+DRFG+ + L+FY+I DL TI++R A L + Sbjct: 142 PSARSMRLNLSPFTLVGATTKAGRLTSPLRDRFGMSLHLDFYKISDLVTIIKRSAALLKV 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA IA+ SRGTPR+A RLL+R+RDFA+V IT +I + L L ID G D Sbjct: 202 DIEQKAAERIALCSRGTPRLANRLLKRIRDFAQVRGDGVITMDITEEGLRLLEIDSHGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q D R L + F GGPVGIE+I+A L+E IED+ EPY+IQ+G++ RT RGR++ Sbjct: 262 QNDRRLLLTVIDKFDGGPVGIESIAAALNEDVSTIEDIYEPYLIQEGYMFRTARGRIVSD 321 Query: 322 IAWQHL 327 A+ HL Sbjct: 322 KAYDHL 327 >gi|331091225|ref|ZP_08340066.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae bacterium 2_1_46FAA] gi|330404672|gb|EGG84211.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae bacterium 2_1_46FAA] Length = 333 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 170/317 (53%), Positives = 236/317 (74%), Gaps = 1/317 (0%) Query: 14 QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED I + LRP+ L ++ GQ +A L+++I+AAK R EALDHVLF GPPGLGKTTLA Sbjct: 12 EEDLKIENHLRPQLLTDYIGQEKAKEMLRIYIQAAKERNEALDHVLFYGPPGLGKTTLAG 71 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEEILYPAMED+ Sbjct: 72 IIANEMGVNLKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEILYPAMEDY 131 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+M+G+G +ARS++++L +FTL+ ATTR G+LT PL+DRFG+ RL FY ++L+TI+ Sbjct: 132 AIDIMIGKGANARSIRLDLPQFTLVGATTRAGMLTAPLRDRFGVVQRLEFYTEKELQTII 191 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A + G+ V + A E+A RSRGTPR+A RLL+RVRDFA++ + IT E A+ AL Sbjct: 192 IRSAGVMGVEVDENGAMEMARRSRGTPRLANRLLKRVRDFAQIKYDGIITEEAANYALDL 251 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +DK G D +D L + + F GGPVG++T++A + E IED+ EPY+I+ GF+ R Sbjct: 252 LEVDKYGLDHIDRNILLTMIQKFNGGPVGLDTLAASIGEDSGTIEDVYEPYLIKNGFLHR 311 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR++ A+ HLGI Sbjct: 312 TPRGRVVTSFAYHHLGI 328 >gi|89889466|ref|ZP_01200977.1| holliday junction specific DNA helicase, subunit ruvB [Flavobacteria bacterium BBFL7] gi|89517739|gb|EAS20395.1| holliday junction specific DNA helicase, subunit ruvB [Flavobacteria bacterium BBFL7] Length = 342 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 179/319 (56%), Positives = 232/319 (72%), Gaps = 1/319 (0%) Query: 11 NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 + S E+ D+ LRP + ++F GQ + NLK+F+EAA R +ALDH LF GPPGLGKTT Sbjct: 11 HFSHEENDMERALRPLSFDDFAGQDQVLENLKIFVEAANQRDDALDHALFHGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A ELGV + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY AM Sbjct: 71 LAHILANELGVGIKVTSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYSAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D+M+ GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI RL +Y E L Sbjct: 131 EDYKIDIMIETGPNARTVQINLAPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLS 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 TIV R A + + + ++AA EIA RSRGTPRIA LLRRVRDFA++ +I +IA + Sbjct: 191 TIVTRSADILKVPIDEDAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGSIDLKIAKYS 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D G D++D + L I F GGPVG+ TI+ +SE + IE++ EP++IQQGF Sbjct: 251 LKALNVDVNGLDEMDNKILLTIIDKFKGGPVGLTTIATAVSESAETIEEVYEPFLIQQGF 310 Query: 310 IQRTPRGRLLMPIAWQHLG 328 I RTPRGR + +A+QHLG Sbjct: 311 IMRTPRGREVTELAYQHLG 329 >gi|268318193|ref|YP_003291912.1| Holliday junction DNA helicase RuvB [Rhodothermus marinus DSM 4252] gi|262335727|gb|ACY49524.1| Holliday junction DNA helicase RuvB [Rhodothermus marinus DSM 4252] Length = 340 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 179/322 (55%), Positives = 231/322 (71%), Gaps = 1/322 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 ++ED + +L RPR LEEF GQ + NL+VFI AA R E LDHVL GPPGLGKTTLA Sbjct: 14 AEEDYEKAL-RPRRLEEFIGQPKIKDNLRVFITAALQRGETLDHVLLSGPPGLGKTTLAY 72 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+G R+TSGPV+ K D+A LLTNL + DVLFIDEIHRLS +VEE LY AMED+ Sbjct: 73 IIAEEMGARIRTTSGPVLEKPADIAGLLTNLNEGDVLFIDEIHRLSPVVEEYLYSAMEDY 132 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 ++D+++ GP+ARSVK+ L FTLI ATTR GLLT PL+ RFGI R ++Y EDL+ IV Sbjct: 133 RIDILIDSGPNARSVKLRLPPFTLIGATTRKGLLTAPLRARFGIEFRYDYYRTEDLQQIV 192 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A++ G+ + +E A EIA RSRGTPRIA RLLRR RDFAEV ITRE+A AL Sbjct: 193 LRSARILGVEIDEEGAYEIARRSRGTPRIANRLLRRTRDFAEVKGDGRITREVARMALEA 252 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D+ G D++D+R L + FGGGP G+ T++ + E +E++ EPY+IQ+GF++R Sbjct: 253 LDVDEAGLDEMDVRLLRTLIEKFGGGPTGLNTLAVAVGEDPGTLEEVYEPYLIQEGFLER 312 Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334 TPRGR+ A+QH G+ P R Sbjct: 313 TPRGRVATIRAYQHFGLTPPAR 334 >gi|182418590|ref|ZP_02949870.1| holliday junction DNA helicase RuvB [Clostridium butyricum 5521] gi|237668079|ref|ZP_04528063.1| Holliday junction DNA helicase RuvB [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377593|gb|EDT75144.1| holliday junction DNA helicase RuvB [Clostridium butyricum 5521] gi|237656427|gb|EEP53983.1| Holliday junction DNA helicase RuvB [Clostridium butyricum E4 str. BoNT E BL5262] Length = 347 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 177/321 (55%), Positives = 237/321 (73%), Gaps = 3/321 (0%) Query: 11 NVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 N S+ ++D + LRP+ + E+ GQ + L +FI+AAK R EALDHVL GPPGLGK Sbjct: 6 NPSELNSDFNSELSLRPQKINEYIGQEKVKERLDIFIKAAKNRNEALDHVLLYGPPGLGK 65 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A+E+ + + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+ VEEILYP Sbjct: 66 TTLANIIAKEMTGDLKVTSGPAIERAGDLAAILTTLKDYDVLFIDEIHRLNRSVEEILYP 125 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+ LD+++G+G SA+S++I+L +FTLI ATTRVG+LT PL+DRFG+ + +Y ++ Sbjct: 126 AMEDYVLDIVIGKGASAKSIRIDLPKFTLIGATTRVGMLTAPLRDRFGVLCAMEYYTNDE 185 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 LK I+ R A + G ++T+E A EIA RSRGTPRIA RLL+RVRD++EV K I+ + A Sbjct: 186 LKEIIVRSASVFGCSITEEGAIEIARRSRGTPRIANRLLKRVRDYSEVKSNKIISLKEAR 245 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D +GFD++D + L I NF GGPVGIET+S + E IED+ EPY++QQ Sbjct: 246 EALQLLEVDNLGFDRVDNKILEAIIDNFKGGPVGIETLSYFIGEELGTIEDVYEPYLLQQ 305 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 GFI RTPRGR+ A++HLG Sbjct: 306 GFIIRTPRGRIASDKAYEHLG 326 >gi|115379905|ref|ZP_01466964.1| holliday junction DNA helicase RuvB [Stigmatella aurantiaca DW4/3-1] gi|115363081|gb|EAU62257.1| holliday junction DNA helicase RuvB [Stigmatella aurantiaca DW4/3-1] Length = 344 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 174/306 (56%), Positives = 226/306 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRT EE+ GQ LKV++ AA R +ALDH LF GPPGLGKT+LA ++A ELGV Sbjct: 25 LRPRTFEEYVGQDAVVEKLKVYVRAAGQRRDALDHCLFSGPPGLGKTSLAHIIASELGVG 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGP + + GDLA LLTNL +RDVLFIDEIHRL+ VEE LYPAMEDF+LD+ + G Sbjct: 85 IHVTSGPALERKGDLAGLLTNLNERDVLFIDEIHRLNAAVEEYLYPAMEDFRLDITIDTG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR++KI+L FTLI ATTR GLLT+PL+DRF I RL++YE + L+ I+ R A++ G+ Sbjct: 145 PAARAMKIDLPPFTLIGATTRTGLLTSPLRDRFQIQERLDYYEPKYLEMILNRSARILGV 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +A+ EI+ RSRGTPRI+ RLLRR+RDFA+V ITRE+A +L RL +D G D Sbjct: 205 PLERDASKEISTRSRGTPRISNRLLRRLRDFAQVEGEGHITRELARVSLDRLGVDASGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I FGGGPVG+ETI+A + E RD+IED+ EPY++Q+GF+QRTPRGR+ Sbjct: 265 SMDRKILLTIIDKFGGGPVGVETIAASVGEQRDSIEDVYEPYLLQEGFLQRTPRGRMATH 324 Query: 322 IAWQHL 327 A+ + Sbjct: 325 RAYGYF 330 >gi|149183131|ref|ZP_01861581.1| Holliday junction DNA helicase B [Bacillus sp. SG-1] gi|148849163|gb|EDL63363.1| Holliday junction DNA helicase B [Bacillus sp. SG-1] Length = 333 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 177/330 (53%), Positives = 236/330 (71%), Gaps = 1/330 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++S D L LRP+TL ++ GQ + SNL +FIEAA+ R E LDHVL GPP Sbjct: 3 ERVVSSEAETSDHSFELSLRPQTLNQYIGQDKVKSNLGIFIEAARMRQETLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA V+A E+GVN R+TSGP I + GDLAA+LT+LE DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLAAVIANEMGVNLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLPRSIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G GPSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y Sbjct: 123 VLYPAMEDFCLDIVIGNGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLCRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 + L+ IV R +++ G + A+ E+A RSRGTPRIA RLLRRVRDFA+V IT Sbjct: 183 NEDQLREIVIRTSEILGTEIDGLASVELARRSRGTPRIANRLLRRVRDFAQVRGNGEITS 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 ++A AL L +DK+G D +D + L I F GGPVG++TI+A + E IED+ EPY Sbjct: 243 DLASHALELLQVDKLGLDHIDHKLLRGIIERFKGGPVGLDTIAASIGEESHTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++Q GF+QRTPRGR++ + ++H +++P+ Sbjct: 303 LLQIGFLQRTPRGRVVTSLVYEHFDLEVPN 332 >gi|319953595|ref|YP_004164862.1| holliday junction ATP-dependent DNA helicase ruvb [Cellulophaga algicola DSM 14237] gi|319422255|gb|ADV49364.1| Holliday junction ATP-dependent DNA helicase ruvB [Cellulophaga algicola DSM 14237] Length = 340 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 180/321 (56%), Positives = 232/321 (72%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 + N + E+ D LRP + +FTGQ + NLKVF+EAA R EALDH LF GPPGLGK Sbjct: 9 NENFTPEEVDFDKALRPISFSDFTGQEQILENLKVFVEAANLRGEALDHTLFHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A ELGV + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY Sbjct: 69 TTLAHILANELGVGIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+++D+M+ GP+ARSV+INL+ FTLI ATTR GLLT+P++ RFGI RL +Y E Sbjct: 129 AMEDYKIDIMIETGPNARSVQINLNPFTLIGATTRSGLLTSPMRARFGIQSRLQYYSSEL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV R +++ + +T +AA EIA RSRGTPRI LLRRVRDFA++ I EI+ Sbjct: 189 LATIVTRSSEILKMPITADAAIEIAGRSRGTPRICNALLRRVRDFAQIKGNGKIDLEISR 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D G D++D + L + F GGPVGI T++ +SE + IE++ EP++IQ+ Sbjct: 249 FALKALNVDAHGLDEMDNKILLTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQE 308 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 GFI RTPRGR + +A++HLG Sbjct: 309 GFIMRTPRGREVTELAYKHLG 329 >gi|317154313|ref|YP_004122361.1| Holliday junction DNA helicase RuvB [Desulfovibrio aespoeensis Aspo-2] gi|316944564|gb|ADU63615.1| Holliday junction DNA helicase RuvB [Desulfovibrio aespoeensis Aspo-2] Length = 327 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 178/327 (54%), Positives = 238/327 (72%), Gaps = 4/327 (1%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 +++N E++ +RPR L +F GQ E +NL VFI AA R LDH LF G PGLGK Sbjct: 1 MTKNTLPEES----VRPRRLGDFIGQDELRANLDVFIRAATERDRPLDHTLFYGNPGLGK 56 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA+++A ELGVN +TSGPV+ ++GDLAA+LTNL+ D+LFIDEIHR+ VEE+LYP Sbjct: 57 TTLARIMASELGVNMVTTSGPVMERSGDLAAILTNLDRGDILFIDEIHRMPATVEEVLYP 116 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMEDFQ+DL++G GP AR+VK++L FTL+ ATTR+GLLT+PL+DRFG R+ FY E+ Sbjct: 117 AMEDFQIDLIIGSGPGARTVKLDLEPFTLVGATTRLGLLTSPLRDRFGCIFRIEFYSPEE 176 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L IV+R A + G+ V A I R+RGTPRIA RLLRRVRD+A V T+TREIA+ Sbjct: 177 LGRIVERAATIIGVHVDSGGALAIGRRARGTPRIANRLLRRVRDYALVHGDGTVTREIAE 236 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 ++L RL +D+ G D +D + L+++ NF GGPVG++TI+A +E IED+ EPY+IQ Sbjct: 237 SSLERLEVDQHGLDTMDRKILSLMVENFNGGPVGLKTIAAACAEEVRTIEDIYEPYLIQC 296 Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPHR 334 GF++RTPRGR+ A+QHL + + R Sbjct: 297 GFLKRTPRGRVATAKAYQHLKMRMDDR 323 >gi|295107076|emb|CBL04619.1| Holliday junction DNA helicase subunit RuvB [Gordonibacter pamelaeae 7-10-1-b] Length = 355 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 172/311 (55%), Positives = 235/311 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ + +L + IEAA+AR + +DH+LF GPPGLGKTTLA VVA ELG + Sbjct: 43 LRPKRLGDYLGQTKVKESLAILIEAARARGDVVDHILFSGPPGLGKTTLATVVANELGAS 102 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP I + GDLAA+LTNLE+ DVLFIDEIHRL+ +VEE+LYPA+EDF LD++VG+G Sbjct: 103 IRTTSGPAIERTGDLAAILTNLEEGDVLFIDEIHRLNRMVEEVLYPALEDFALDIVVGKG 162 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS++++L FTLI ATTR GLLT PL+DRFG+ RL +Y E+L +IV R A + G+ Sbjct: 163 PAARSIRLDLPHFTLIGATTRTGLLTGPLRDRFGMVFRLAYYTPEELGSIVCRSAAILGV 222 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A EIA RSRGTPR+A RLL+RVRD+A+V TI ++A AL +D +G D Sbjct: 223 DIAEDGALEIARRSRGTPRLANRLLKRVRDWAQVRGDGTIDEDVAAQALSFFEVDALGLD 282 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L ++A FGG PVG+ T+++ LSE D++ED+ EP+++QQG + RTP+GR P Sbjct: 283 AVDNRILELLAVQFGGRPVGLSTLASALSEDPDSLEDVYEPFLMQQGLMVRTPKGRQATP 342 Query: 322 IAWQHLGIDIP 332 A++HLGI +P Sbjct: 343 RAYEHLGIALP 353 >gi|332292205|ref|YP_004430814.1| Holliday junction DNA helicase RuvB [Krokinobacter diaphorus 4H-3-7-5] gi|332170291|gb|AEE19546.1| Holliday junction DNA helicase RuvB [Krokinobacter diaphorus 4H-3-7-5] Length = 340 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 179/317 (56%), Positives = 232/317 (73%), Gaps = 1/317 (0%) Query: 13 SQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 S+ED D+ LRP + ++F GQ + NLK+F++AA R EALDH LF GPPGLGKTTLA Sbjct: 13 SREDVDVEKALRPLSFDDFAGQDQVLENLKIFVQAANLRGEALDHTLFHGPPGLGKTTLA 72 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A EL VN + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY AMED Sbjct: 73 NILANELDVNIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYSAMED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +++D+M+ GP+ARSV+I+L+ FTL+ ATTR GLLT P++ RFGI RL +Y E L TI Sbjct: 133 YRIDIMIETGPNARSVQIDLAPFTLVGATTRSGLLTAPMRARFGISSRLQYYTTELLTTI 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V+R + + G+ ++ EAA EIA RSRGTPRIA LLRRVRDFA++ +I IA +L Sbjct: 193 VERSSSILGVPISMEAAVEIAGRSRGTPRIANALLRRVRDFAQIKGNGSIDIAIAKYSLE 252 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L +D G D++D + L I F GGPVGI T++ +SE + IE++ EP++IQQGFI Sbjct: 253 ALNVDAHGLDEMDNKILATIIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQGFIM 312 Query: 312 RTPRGRLLMPIAWQHLG 328 RTPRGR + A++HLG Sbjct: 313 RTPRGREVTEEAYRHLG 329 >gi|225572216|ref|ZP_03781080.1| hypothetical protein RUMHYD_00510 [Blautia hydrogenotrophica DSM 10507] gi|225040278|gb|EEG50524.1| hypothetical protein RUMHYD_00510 [Blautia hydrogenotrophica DSM 10507] Length = 332 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/309 (54%), Positives = 233/309 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L E+ GQ + LK++IEAA+ R +ALDHVLF GPPGLGKTTLA ++A E+GV+ Sbjct: 23 LRPQSLSEYIGQEKTKKTLKIYIEAARQRGDALDHVLFYGPPGLGKTTLAGIIANEMGVH 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+LYPAMED+ +D+M+G+G Sbjct: 83 MKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVLYPAMEDYAIDIMIGKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SARS++++L +FTL+ ATTR GLLT PL+DRFG+ L FY + +L TI+ R A++ + Sbjct: 143 ASARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVMHHLEFYTVLELTTIILRSAQVLEV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPR+A RLL+RVRDFA+V + IT E+A AL L +D+ G D Sbjct: 203 EIEPKGAQEIAKRSRGTPRLANRLLKRVRDFAQVKYDGKITLEVAQFALDLLEVDQYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D R L + NF GGPVG+ET++A + E +ED+ EPY++Q GF+ RTPRGR+ Sbjct: 263 QVDRRILKTLIINFQGGPVGLETLAASVGEDPGTVEDVYEPYLLQNGFLSRTPRGRIASD 322 Query: 322 IAWQHLGID 330 +A++HLGI+ Sbjct: 323 LAYRHLGIE 331 >gi|294675102|ref|YP_003575718.1| Holliday junction DNA helicase RuvB [Prevotella ruminicola 23] gi|294472981|gb|ADE82370.1| Holliday junction DNA helicase RuvB [Prevotella ruminicola 23] Length = 345 Score = 356 bits (913), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 178/330 (53%), Positives = 237/330 (71%), Gaps = 2/330 (0%) Query: 1 MMDRE-GLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 MMD + + SQ + D + LRP + +F+GQ + NL+VF+EAAK R E LDH L Sbjct: 1 MMDEDFDIREERFSQGEKDFENALRPLSFSDFSGQKKVVENLEVFVEAAKYRGEPLDHTL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS Sbjct: 61 LHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEKNDVLFIDEIHRLS 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + Sbjct: 121 PVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINM 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 L +YE E L+ I++R A + G+ +T++AA EIA RSRGTPRIA LLRRVRDFA+V Sbjct: 181 HLEYYEPETLQAIIERSANILGVPITEDAALEIAGRSRGTPRIANALLRRVRDFAQVKGN 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 TI +I AL L IDK G D++D + L I F GGPVGI TI+ + E +E+ Sbjct: 241 GTIDTKITRVALTALNIDKYGLDEIDNKILLTIIDKFRGGPVGITTIATAIGEDAGTVEE 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 + EP++I +GFI+RTPRGR++ +A++H G Sbjct: 301 VYEPFLIMEGFIKRTPRGRMVTELAYKHFG 330 >gi|300813210|ref|ZP_07093578.1| Holliday junction DNA helicase RuvB [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512663|gb|EFK39795.1| Holliday junction DNA helicase RuvB [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 334 Score = 355 bits (912), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 175/326 (53%), Positives = 233/326 (71%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E ++ N S ED LRP+ L ++ GQ + + LK+FI+AAK R E LDH L GPPG Sbjct: 3 ERIIDANFSVEDKQEINLRPKWLLDYIGQDKVINKLKIFIKAAKNRKEPLDHTLLSGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A E+GVN + TSGP I + GDLA++LTNL++ DVLFIDEIHRL+ VEEI Sbjct: 63 LGKTTLAGIIANEMGVNIKVTSGPAIERQGDLASILTNLKEDDVLFIDEIHRLNKSVEEI 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED+ LD+++G+GPSARS++++L++FTLI ATTR G+LT+PL+DRFG+ + + Y Sbjct: 123 LYPAMEDYALDIIIGKGPSARSIRLDLAKFTLIGATTRSGMLTSPLRDRFGVLLNMELYS 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 I+ L IV R A++ + + E A EIA RSRGTPRIA RLL+RVRD+AEV IT + Sbjct: 183 IDALTKIVIRSAEILNIPIEKEGALEIAKRSRGTPRIANRLLKRVRDYAEVVERGVITEK 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A L L IDK G D +D + + + NF G PVGI+ ISA + E R +ED+ EPY+ Sbjct: 243 VAVKGLNLLEIDKYGLDNIDRKIILTMIENFVGRPVGIDAISASIGEDRITVEDVYEPYL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330 +Q GFI RTPRGRL A+ H G++ Sbjct: 303 MQIGFIVRTPRGRLATKKAYDHFGLE 328 >gi|295132462|ref|YP_003583138.1| Holliday junction DNA helicase B [Zunongwangia profunda SM-A87] gi|294980477|gb|ADF50942.1| Holliday junction DNA helicase B [Zunongwangia profunda SM-A87] Length = 340 Score = 355 bits (912), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 183/319 (57%), Positives = 228/319 (71%), Gaps = 1/319 (0%) Query: 11 NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N S E+ DI LRP + ++F GQ + NLKVF+ AA R+EALDH L GPPGLGKTT Sbjct: 11 NFSPEEFDIERALRPLSFDDFAGQEQVLDNLKVFVAAANLRSEALDHTLLHGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A ELGV + TSGPV+ K GDLA LLTNL++RD+LFIDEIHRLS IVEE LY AM Sbjct: 71 LAHILANELGVGLKITSGPVLDKPGDLAGLLTNLDERDILFIDEIHRLSPIVEEYLYSAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D+M+ GP+ARSV++NLS FTLI ATTR GLLT P++ RFGI RL +Y E L Sbjct: 131 EDYRIDIMIESGPNARSVQLNLSPFTLIGATTRSGLLTAPMRARFGISSRLQYYSTELLS 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IVQR A++ + +T EAA EIA RSRGTPRIA LLRRVRDFA++ I IA Sbjct: 191 DIVQRSAQILKVPITMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGDGKIDIGIAKYG 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D G D++D R L I F GGPVGI T++ +SE + IE++ EP++IQQGF Sbjct: 251 LKALNVDAHGLDEMDNRILETIIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQGF 310 Query: 310 IQRTPRGRLLMPIAWQHLG 328 I RTPRGR + A++HLG Sbjct: 311 IYRTPRGREVTEAAYKHLG 329 >gi|260060661|ref|YP_003193741.1| Holliday junction DNA helicase RuvB [Robiginitalea biformata HTCC2501] gi|88784791|gb|EAR15960.1| Holliday junction DNA helicase RuvB [Robiginitalea biformata HTCC2501] Length = 340 Score = 355 bits (912), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 179/318 (56%), Positives = 230/318 (72%), Gaps = 1/318 (0%) Query: 12 VSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +S E+ DI LRP + ++FTGQ + NL VF++AA R EALDH L GPPGLGKTTL Sbjct: 12 LSPEELDIERALRPVSFDDFTGQAQVLENLTVFVQAANLRQEALDHTLLHGPPGLGKTTL 71 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A ELGV + TSGPV+ K GDLA LLTNLE RDVLFIDEIHRLS +VEE LY AME Sbjct: 72 AHILANELGVGLKVTSGPVLDKPGDLAGLLTNLEPRDVLFIDEIHRLSPVVEEYLYSAME 131 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF++D+M+ GP+ARSV+++L+ FTL+ ATTR GLLT P++ RFGI RL +Y E L T Sbjct: 132 DFKIDIMIETGPNARSVQLHLNPFTLVGATTRSGLLTAPMRARFGISSRLEYYNTELLAT 191 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IVQR A++ + +T++AA EIA RSRGTPRI LLRRVRDFA++ I EI+ L Sbjct: 192 IVQRSAEILKVPITEDAAIEIAGRSRGTPRICNALLRRVRDFAQIKGNGNIDMEISRFGL 251 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L +D G D++D + L I F GGPVG+ T++ +SE + IE++ EP++IQQGFI Sbjct: 252 KALHVDAYGLDEMDNKILATIIDKFKGGPVGLTTLATAVSENAETIEEVYEPFLIQQGFI 311 Query: 311 QRTPRGRLLMPIAWQHLG 328 RTPRGR + +A+QHLG Sbjct: 312 MRTPRGREVTELAYQHLG 329 >gi|162455498|ref|YP_001617865.1| Holliday junction DNA helicase RuvB [Sorangium cellulosum 'So ce 56'] gi|161166080|emb|CAN97385.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56'] Length = 340 Score = 355 bits (911), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 178/312 (57%), Positives = 223/312 (71%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L RP +L E+ GQ + NLKVF+EAA+ R E LDH+LF GPPGLGKTTLA ++ARE+GV Sbjct: 20 LFRPASLAEYVGQAKHTENLKVFVEAARRRREPLDHMLFCGPPGLGKTTLAHIIAREMGV 79 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 TSGP I G LA LLT LE DVLFIDEIHRL+ VEE LYPA+E F +D+M G+ Sbjct: 80 ALHVTSGPAIEHKGALAGLLTKLERNDVLFIDEIHRLTPAVEESLYPAIESFNIDIMTGD 139 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP A ++++ L FTL+ ATTR GLLT PL RFG +RL+FY +E+L+ IVQR A L Sbjct: 140 GPYATTIQLALKPFTLVGATTRTGLLTAPLLSRFGHVVRLDFYPVEELQRIVQRSAGLLD 199 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + + A EIA R+RGTPR+A RLLRRVRDFAEV IT EIA RL ID G Sbjct: 200 VPIDAGGAREIAARARGTPRVANRLLRRVRDFAEVLGDGAITMEIARKTAERLEIDAAGL 259 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D++D R L +I ++ GGPVGI+T++A LSEPRD IED+ EP+++QQGF+ RTPRGR+ Sbjct: 260 DEMDRRLLRVIVDHYDGGPVGIDTLAAALSEPRDTIEDVYEPFLLQQGFVGRTPRGRVAT 319 Query: 321 PIAWQHLGIDIP 332 A++HLG+ P Sbjct: 320 RRAYEHLGLAAP 331 >gi|228474115|ref|ZP_04058856.1| holliday junction DNA helicase RuvB [Capnocytophaga gingivalis ATCC 33624] gi|228274629|gb|EEK13470.1| holliday junction DNA helicase RuvB [Capnocytophaga gingivalis ATCC 33624] Length = 341 Score = 355 bits (911), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 180/319 (56%), Positives = 233/319 (73%), Gaps = 1/319 (0%) Query: 11 NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N+S ++ DI LRP + ++FTGQ NLK+F++AA R EALDH LF GPPGLGKTT Sbjct: 11 NLSPQELDIERALRPLSFDDFTGQEAILENLKIFVKAANLRGEALDHTLFHGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A ELGV + TSGPV+ K GDLA LLTNLE RDVLFIDEIHRLS IVEE LY AM Sbjct: 71 LANILANELGVGIKITSGPVLDKPGDLAGLLTNLEPRDVLFIDEIHRLSPIVEEYLYSAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D+M+ GP+AR+V+I+L+ FTLI ATTR GLLT P++ RFGI RL +Y E L Sbjct: 131 EDYKIDIMIESGPNARTVQISLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYTTELLA 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 I+QR A++ G+ +++EAA E+A RSRGTPRIA LLRRVRDFA++ I EI A Sbjct: 191 NILQRSAQILGVPISEEAAIELAGRSRGTPRIANALLRRVRDFAQIKGNGKIDIEITRFA 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D G D++D + L I F GGPVGI T++ +SE + +E++ EP++IQQGF Sbjct: 251 LKALNVDAHGLDEMDNKILLTIIDKFKGGPVGITTLATAVSENAETLEEVYEPFLIQQGF 310 Query: 310 IQRTPRGRLLMPIAWQHLG 328 I RTPRGR + +A++HLG Sbjct: 311 IIRTPRGREVTDLAYKHLG 329 >gi|317485563|ref|ZP_07944440.1| Holliday junction DNA helicase RuvB [Bilophila wadsworthia 3_1_6] gi|316923243|gb|EFV44452.1| Holliday junction DNA helicase RuvB [Bilophila wadsworthia 3_1_6] Length = 342 Score = 355 bits (910), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 175/325 (53%), Positives = 240/325 (73%), Gaps = 3/325 (0%) Query: 8 LSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 L++ +S D+ S +RP LE+F GQ E +NL+VF+ AA+ R +A+DHVLF G PG Sbjct: 16 LAKELSAPDSGSSGDESIRPSRLEDFIGQEELRANLRVFLNAARERGQAMDHVLFYGNPG 75 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLAQ++A ELGVN TSGPV+ ++GDLAA+LTNL D+LF+DEIHR+ I VEEI Sbjct: 76 LGKTTLAQIMAAELGVNLICTSGPVLERSGDLAAILTNLSRHDILFVDEIHRMPIAVEEI 135 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPA+ED++LDL++G+GP+AR+VKI+L FTL+ ATTR+GLL++PL+DRFGI RL FY Sbjct: 136 LYPALEDYKLDLVIGQGPAARTVKIDLEPFTLVGATTRIGLLSSPLRDRFGIISRLEFYT 195 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 E+L +V R +++ G+ +T+ A EI RSRGTPRIA RLLRRVRDFA V + + E Sbjct: 196 PEELSRVVIRSSRILGVPITEGGALEIGRRSRGTPRIANRLLRRVRDFAAVYGSGVVDEE 255 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 A AL R+ +D+ G DQ+D + L ++ +GGGPVG++T++ SE IED+ EPY+ Sbjct: 256 QASHALRRMDVDENGLDQMDRKLLRVLVDIYGGGPVGVKTLAVACSEEVRTIEDIYEPYL 315 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329 IQ GF++RT RGR+ A++HL + Sbjct: 316 IQCGFLKRTSRGRMATAKAYKHLNM 340 >gi|221632730|ref|YP_002521951.1| Holliday junction DNA helicase RuvB [Thermomicrobium roseum DSM 5159] gi|254767447|sp|B9KZ09|RUVB_THERP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|221155832|gb|ACM04959.1| Holliday junction DNA helicase RuvB [Thermomicrobium roseum DSM 5159] Length = 353 Score = 355 bits (910), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 177/312 (56%), Positives = 231/312 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E+ GQ +L + I AA+ R E LDH+LF GPPGLGKTTLA ++A E+GVN Sbjct: 22 LRPRRLAEYIGQDRVKESLAIAIRAAQERGEPLDHLLFYGPPGLGKTTLAGIIAAEMGVN 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I + GDL ++LTNL DVLFIDEIHRL+ +VEEILYPAMEDF +DL++G+G Sbjct: 82 LRITSGPAIERPGDLVSILTNLRPGDVLFIDEIHRLNRLVEEILYPAMEDFAVDLVIGKG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+I L RFTL+ ATTR+ LLT+PL+DRFG RL+FY+ L+ IV+R A++ + Sbjct: 142 PAARSVRIALPRFTLVGATTRLALLTSPLRDRFGATYRLDFYDTAALRAIVERAARILQV 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T + A EIA R RGTPRIA RLL+RVRD+A+V TITRE+A AL +LA+D++G D Sbjct: 202 PITSDGAEEIARRGRGTPRIAIRLLKRVRDYAQVIGDGTITRELARLALDQLAVDELGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D L + F GGPVGI+T++A SE D IE + EPY++Q GF+QRTPRGR+ Sbjct: 262 EVDRLILRTLVEKFDGGPVGIQTLAAATSEEPDTIESVYEPYLLQLGFLQRTPRGRIATR 321 Query: 322 IAWQHLGIDIPH 333 A++HLG+ P Sbjct: 322 RAYEHLGLTYPE 333 >gi|303328182|ref|ZP_07358620.1| holliday junction DNA helicase RuvB [Desulfovibrio sp. 3_1_syn3] gi|302861512|gb|EFL84448.1| holliday junction DNA helicase RuvB [Desulfovibrio sp. 3_1_syn3] Length = 324 Score = 355 bits (910), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 172/306 (56%), Positives = 234/306 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L++F GQ E +NL+V+++AA+ R +ALDH LF G PGLGKTTLAQ++A ELGVN Sbjct: 14 VRPRSLDDFIGQDELRANLRVYLDAARERGKALDHTLFYGNPGLGKTTLAQIMASELGVN 73 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGPV+ ++GDLAA+LTNL D+LF+DEIHR+ I VEE+LYPAMEDF+LDL++G+G Sbjct: 74 LVCTSGPVLERSGDLAAILTNLGRHDILFVDEIHRMPIAVEEVLYPAMEDFKLDLVIGQG 133 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+VKI+L FTL+ ATTR+GL+++PL+DRFGI RL +Y DL +V+R A++ G+ Sbjct: 134 PAARTVKIDLEPFTLVGATTRMGLISSPLRDRFGIVARLEYYSPTDLARVVRRTARILGV 193 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 VT + A EI RSRGTPRIA RLLRRVRDFA + +T A AAL R+ +D+ G D Sbjct: 194 EVTPDGAEEIGRRSRGTPRIANRLLRRVRDFALIRGNGQVTGGEASAALKRMDVDEHGLD 253 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + L ++ ++ GGPVGI+T++ SE IED+ EPY+IQ GF++RTPRGR+ Sbjct: 254 QMDRKLLEVLITHYDGGPVGIKTLAVACSEEVRTIEDIYEPYLIQCGFLKRTPRGRMATA 313 Query: 322 IAWQHL 327 A++HL Sbjct: 314 RAYKHL 319 >gi|224372722|ref|YP_002607094.1| Holliday junction DNA helicase RuvB [Nautilia profundicola AmH] gi|223589928|gb|ACM93664.1| holliday junction DNA helicase RuvB [Nautilia profundicola AmH] Length = 330 Score = 355 bits (910), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 166/306 (54%), Positives = 231/306 (75%), Gaps = 2/306 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + NLKVFIEAAK R E+LDH+LF GPPGLGKTTLA ++A E+G N Sbjct: 19 LRPQNLDEYIGQEQIKKNLKVFIEAAKKRGESLDHILFFGPPGLGKTTLANIIASEMGSN 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++ S P++ K+GDLAA+LTNLED D+LFIDEIHRL +EE+LY AMEDF+LD+++G G Sbjct: 79 LKTISAPMLEKSGDLAAILTNLEDGDILFIDEIHRLKASIEEVLYSAMEDFRLDIVIGSG 138 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++K++++RFTLI ATTR G+L+NPL+DRFG+ RLNFY E+L I++ A+ Sbjct: 139 PAAQTIKLDVARFTLIGATTRAGMLSNPLRDRFGMSFRLNFYNHEELSEIIRLAAQKLSK 198 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + AA EIA RSRGTPRIA RLL+RVRDFAE+ TIT + AL L I++ GFD Sbjct: 199 EIESNAAVEIAKRSRGTPRIALRLLKRVRDFAEIKDENTITHKTTKYALDELGINEHGFD 258 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD+++LT++A P+G+ TI+A LSE IE++IEP+++ GF+++TP+GR+ Sbjct: 259 ELDIKFLTLLAD--AKKPIGLSTIAAALSEDEGTIEEVIEPFLLANGFVEKTPKGRIATR 316 Query: 322 IAWQHL 327 A++ L Sbjct: 317 KAYEIL 322 >gi|222529108|ref|YP_002572990.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor bescii DSM 6725] gi|254767406|sp|B9MRB3|RUVB_ANATD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|222455955|gb|ACM60217.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor bescii DSM 6725] Length = 338 Score = 355 bits (910), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 171/323 (52%), Positives = 229/323 (70%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E LL S ED LRP+TLEE+ GQ + +K+FIEAAK R E LDHVL GPPG Sbjct: 2 ERLLDNKFSIEDVHEESLRPKTLEEYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+ +EE+ Sbjct: 62 LGKTTLANIIANEMGVDIKITSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED ++D+++G+GPSA+++++ L FTLI ATTR GLL++PL+DRFGI RL++Y Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+L IV R A + + EA EIA RSRGTPR+A RLLRR+RD+A V H +IT E Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A + L +D+ G D +D L I FGGGPVG+ TI+A +SE IED+ EPY+ Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAISEDEGTIEDIYEPYL 301 Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327 IQ+GF+ +T RGR+ A H+ Sbjct: 302 IQEGFLVKTARGRVATQKAISHI 324 >gi|305665240|ref|YP_003861527.1| Holliday junction DNA helicase RuvB [Maribacter sp. HTCC2170] gi|88709993|gb|EAR02225.1| Holliday junction DNA helicase RuvB [Maribacter sp. HTCC2170] Length = 340 Score = 355 bits (910), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 185/321 (57%), Positives = 235/321 (73%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 S N++ E+ DI LRP T ++FTGQ + NLKVF+EAA R EALDH LF GPPGLGK Sbjct: 9 SENLTPEEIDIERALRPITFDDFTGQEQVLENLKVFVEAANQRDEALDHTLFHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A ELGV + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY Sbjct: 69 TTLAHILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPIVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+++D+M+ GP+ARSV+INL+ FTLI ATTR GLLT P++ RFGI RL +Y E Sbjct: 129 AMEDYKIDIMIETGPNARSVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTEL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV+R A++ + + +AA EIA RSRGTPRI LLRRVRDFA++ I EI+ Sbjct: 189 LSTIVERSAEILKVPIAIDAAIEIAGRSRGTPRICNSLLRRVRDFAQIKGNGNIDMEISK 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 +L L +D G D++D + LT I F GGPVGI T++ +SE + IE++ EP++IQQ Sbjct: 249 YSLKALNVDAHGLDEMDNKILTTIIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQ 308 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 GFI RTPRGR + +A++HLG Sbjct: 309 GFIMRTPRGREVTELAYKHLG 329 >gi|290893934|ref|ZP_06556910.1| ruvB protein [Listeria monocytogenes FSL J2-071] gi|290556472|gb|EFD90010.1| ruvB protein [Listeria monocytogenes FSL J2-071] Length = 335 Score = 355 bits (910), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 182/329 (55%), Positives = 233/329 (70%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + S V E+ + LRP+TL ++ GQ + +NL VFIEAAK R EALDHVL Sbjct: 1 MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAAKLRNEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+G ++TSGP I + GDLA +LT+LE DVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+ LD+++G GP+ARSV+++L FTLI ATTR GLL+ PL+DRFG+ L Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E L IV R + + + D A EIA RSRGTPRIA RLL+RVRDFA+V T Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +D G D +D + L I ++F GGPVG++TI+A + E R+ IED+ Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QRTPRGR+ A+ HLGI Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329 >gi|298206841|ref|YP_003715020.1| Holliday junction DNA helicase RuvB [Croceibacter atlanticus HTCC2559] gi|83849475|gb|EAP87343.1| Holliday junction DNA helicase RuvB [Croceibacter atlanticus HTCC2559] Length = 340 Score = 354 bits (909), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 179/319 (56%), Positives = 227/319 (71%), Gaps = 1/319 (0%) Query: 11 NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 + S+E+ DI LRP + +F GQ + NLK+F+EAA R EALDH LF GPPGLGKTT Sbjct: 11 SFSKEEFDIERALRPLSFSDFAGQDQVLENLKIFVEAANQRNEALDHTLFHGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A EL V + TSGPV+ K GDLA LLTNLE RDVLFIDEIHRLS ++EE LY AM Sbjct: 71 LAHILANELNVGIKVTSGPVLDKPGDLAGLLTNLEPRDVLFIDEIHRLSPVIEEYLYSAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D+M+ GP+ARSV+INL+ FTLI ATTR GLLT P++ RFGI RL +Y E L Sbjct: 131 EDYKIDIMIETGPNARSVQINLNPFTLIGATTRSGLLTAPMRARFGISSRLQYYSTELLS 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 TIV+R + + + + EAA EIA RSRGTPRIA LLRRVRDFA++ I I+ Sbjct: 191 TIVERSSSILNVPIDLEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGRIDMSISKFG 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D G D++D R L+ I F GGPVGI T++ +SE + IE++ EP++IQQGF Sbjct: 251 LKALNVDANGLDEMDNRILSTIIEKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQGF 310 Query: 310 IQRTPRGRLLMPIAWQHLG 328 I RTPRGR + A++HLG Sbjct: 311 IMRTPRGREVTEAAYKHLG 329 >gi|156742996|ref|YP_001433125.1| Holliday junction DNA helicase RuvB [Roseiflexus castenholzii DSM 13941] gi|189046043|sp|A7NNH1|RUVB_ROSCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|156234324|gb|ABU59107.1| Holliday junction DNA helicase RuvB [Roseiflexus castenholzii DSM 13941] Length = 347 Score = 354 bits (909), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 182/334 (54%), Positives = 236/334 (70%), Gaps = 1/334 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M E +++ +ED I LRPR L EF GQ + L++ I AAK R E LDH L Sbjct: 1 MSDERVVTPRAGEEDQQIEKSLRPRRLAEFIGQEKVVEQLRIAIAAAKGRGEPLDHTLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT+LA V+A E+ VN + TSGP I +AGDLAALLTNL+ D+LFIDEIHRL+ Sbjct: 61 GPPGLGKTSLAGVLANEMEVNIKLTSGPAIERAGDLAALLTNLQKDDILFIDEIHRLNRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EE+LYPAMEDF LD+MVG+GP ARS+++ L RFT++ ATTR+ LLT+PL+DRFG RL Sbjct: 121 IEEVLYPAMEDFALDIMVGKGPGARSLRLKLPRFTVVGATTRLALLTSPLRDRFGSVHRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY ++ L IV R A++ G+ T E A EIA R+RGTPRI RLLRRVRD+A+V Sbjct: 181 EFYSVDALYEIVMRSARILGVVCTPEGAREIAARARGTPRIVNRLLRRVRDYAQVIGDGI 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT ++A AL +L +D +G D+ D R L I FGGGPVG+ T++A L+E DAIED+ Sbjct: 241 ITLDVARDALAKLEVDHLGLDENDRRLLRAIIDLFGGGPVGLSTLAASLAEEVDAIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EP+++Q GF+QRTPRGR+ A++HLG+ R Sbjct: 301 EPFLLQLGFLQRTPRGRIATRRAYEHLGVPYVER 334 >gi|225410072|ref|ZP_03761261.1| hypothetical protein CLOSTASPAR_05293 [Clostridium asparagiforme DSM 15981] gi|225042420|gb|EEG52666.1| hypothetical protein CLOSTASPAR_05293 [Clostridium asparagiforme DSM 15981] Length = 331 Score = 354 bits (909), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 171/326 (52%), Positives = 238/326 (73%), Gaps = 1/326 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ V+ ED I + LRP+ L+++ GQ S LK++I+AA++R EALDHVLF GPPGL Sbjct: 5 IITTEVTAEDERIETTLRPQHLKDYIGQERLKSTLKIYIDAARSRGEALDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+GV+ + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLAGIIANEMGVSMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+M+G+ SARS++++L FTL+ ATTR GLLT PL+DRFG+ RL FY Sbjct: 125 YPAMEDYAIDIMLGKEASARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVVQRLEFYTP 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+L I+ AK+ G+ + A E+A RSRGTPR+A RLL+RVRDFA+V + ITRE+ Sbjct: 185 EELTVIILNSAKVLGVEIDKSGALELARRSRGTPRLANRLLKRVRDFAQVKYDGVITREV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D AL + +DK+G DQ D L M+ F GGPVG++T++A L E +ED+ EPY++ Sbjct: 245 TDFALDIMDVDKLGLDQNDRNILLMMIEKFSGGPVGLDTLAAALGEDSGTLEDVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331 G I RTPRGR+ A++HLG++I Sbjct: 305 MNGLINRTPRGRMATEAAYRHLGLEI 330 >gi|326336334|ref|ZP_08202505.1| crossover junction ATP-dependent DNA helicase RuvB [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691508|gb|EGD33476.1| crossover junction ATP-dependent DNA helicase RuvB [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 341 Score = 354 bits (909), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 181/321 (56%), Positives = 230/321 (71%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 N+S ++ DI LRP + +FTGQ NLK+F++AA R EALDH LF GPPGLGK Sbjct: 9 KNNLSPQELDIERALRPLSFNDFTGQEAILENLKIFVKAANLRGEALDHTLFHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A ELGV + TSGPV+ K GDLA LLTNLE RDVLFIDEIHRLS IVEE LY Sbjct: 69 TTLANILANELGVGIKITSGPVLDKPGDLAGLLTNLEPRDVLFIDEIHRLSPIVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+++D+M+ GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI RL +Y E Sbjct: 129 AMEDYKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYTTEL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L I+QR A + G+ ++ EAA E+A RSRGTPRIA LLRRVRDFA++ I EI Sbjct: 189 LADIIQRSAHILGVPISMEAAIELAGRSRGTPRIANALLRRVRDFAQIKGNGKIDIEITR 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D G D++D + L I F GGPVGI T++ +SE + +E++ EP++IQQ Sbjct: 249 FALKALNVDAHGLDEMDNKILLTIIDKFKGGPVGITTLATAVSENAETLEEVYEPFLIQQ 308 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 GFI RTPRGR + +A++HLG Sbjct: 309 GFIIRTPRGREVTDLAYKHLG 329 >gi|149195243|ref|ZP_01872332.1| Holliday junction DNA helicase B [Caminibacter mediatlanticus TB-2] gi|149134585|gb|EDM23072.1| Holliday junction DNA helicase B [Caminibacter mediatlanticus TB-2] Length = 330 Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 168/316 (53%), Positives = 236/316 (74%), Gaps = 2/316 (0%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 VS E+ LRP+ L+E+ GQ + NLKVFIEAAK R E+LDH+LF GPPGLGKTTLA Sbjct: 9 VSFEEGYEKSLRPQNLDEYIGQEQIKKNLKVFIEAAKKRNESLDHMLFFGPPGLGKTTLA 68 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A E+ N ++ S P++ K+GDLAA+LTNLE+ D+LFIDEIHRL +EE+LY AMED Sbjct: 69 NIIANEMNANIKTISAPMLEKSGDLAAILTNLEEGDILFIDEIHRLKAAIEEVLYSAMED 128 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F+LD+++G GP+A+++K+++++FTLI ATTR G+L+NPL+DRFG+ RLNFY E+L I Sbjct: 129 FRLDIVIGSGPAAQTIKLDVAKFTLIGATTRAGMLSNPLRDRFGMSFRLNFYNEEELALI 188 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++ +K + D+AA EIA RSRGTPRIA RLL+R+RDFAEV + K I +IA L Sbjct: 189 IKLASKKLNYEIKDDAAKEIAKRSRGTPRIALRLLKRIRDFAEVENKKIIDLKIAKYGLD 248 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L I++ GFD+LD+R+L ++ P+G+ TI+A LSE D IE++IEP++I GFI+ Sbjct: 249 ELGINEYGFDELDIRFLRLLVE--AKKPLGLSTIAAALSEDEDTIEEVIEPFLIANGFIE 306 Query: 312 RTPRGRLLMPIAWQHL 327 +TP+GR+ +++ L Sbjct: 307 KTPKGRIATRKSYEVL 322 >gi|315303292|ref|ZP_07873927.1| holliday junction DNA helicase RuvB [Listeria ivanovii FSL F6-596] gi|313628339|gb|EFR96837.1| holliday junction DNA helicase RuvB [Listeria ivanovii FSL F6-596] Length = 335 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 181/329 (55%), Positives = 234/329 (71%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + S V E+ + LRP+TL ++ GQ + +NL VFIEAA R EALDHVL Sbjct: 1 MDERIISSETVDSEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+G ++TSGP I + GDLA +LT+L+ DVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLDPGDVLFIDEIHRLSRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EE+LYPAMED+ LD+++G GP+ARSV+++L FTLI ATTR GLL+ PL+DRFG+ L Sbjct: 121 IEEVLYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E L IV R A + + D A EIA RSRGTPRIA RLL+RVRDFA+V T Sbjct: 181 EFYTEEQLTEIVLRTANILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +D G D +D + L I ++F GGPVG++TI+A + E R+ IED+ Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QRTPRGR+ IA++HLGI Sbjct: 301 EPYLLQIGFLQRTPRGRIATEIAYKHLGI 329 >gi|297584757|ref|YP_003700537.1| Holliday junction DNA helicase RuvB [Bacillus selenitireducens MLS10] gi|297143214|gb|ADH99971.1| Holliday junction DNA helicase RuvB [Bacillus selenitireducens MLS10] Length = 333 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 173/312 (55%), Positives = 230/312 (73%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ L+++ GQ + NL VFIEAA+ R EALDHVL GPPGLGKTTLA ++A ELGV Sbjct: 22 RPQRLQQYIGQHQVKDNLTVFIEAARMREEALDHVLLYGPPGLGKTTLATIIANELGVQI 81 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142 R+TSGP I + GDLAA+LT LE DVLFIDEIHRL+ VEE+LYPAMEDF LD+++G+GP Sbjct: 82 RTTSGPAIERPGDLAAVLTALEPGDVLFIDEIHRLNRAVEEVLYPAMEDFFLDIVIGKGP 141 Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202 SARSVK++L FTL+ ATTR GLL+ PL+DRFG+ RL +Y DL IVQR A++ + Sbjct: 142 SARSVKLDLPPFTLVGATTRAGLLSAPLRDRFGVLSRLEYYTEADLNEIVQRTAQVLDVE 201 Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262 + ++ E+A RSRGTPR+A R+LRRVRDFA+V IT +A AL L +D +G D Sbjct: 202 MAGTSSVEVARRSRGTPRVANRILRRVRDFAQVRGDGIITDALAKEALDLLQVDPLGLDH 261 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322 +D + L + F GGPVG++TI+A + E D IED+ EPY++Q GF+QRTPRGR++ P+ Sbjct: 262 IDHKLLKNLIHTFRGGPVGLDTIAATVGEEPDTIEDVYEPYLMQIGFLQRTPRGRVVTPL 321 Query: 323 AWQHLGIDIPHR 334 ++H +++P + Sbjct: 322 VYEHFKLEVPKQ 333 >gi|124006089|ref|ZP_01690925.1| holliday junction DNA helicase RuvB [Microscilla marina ATCC 23134] gi|123988266|gb|EAY27919.1| holliday junction DNA helicase RuvB [Microscilla marina ATCC 23134] Length = 345 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 176/313 (56%), Positives = 226/313 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP ++F+GQ + +NLK+F++AAK R EALDHVL GPPGLGKTTL+ ++A ELG Sbjct: 27 LRPLNFDDFSGQGKIVTNLKIFVQAAKQREEALDHVLLHGPPGLGKTTLSNIIANELGTE 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ K DLA LLTNLE DVLFIDEIHRL+ IVEE LY AMED+++D+M+ G Sbjct: 87 IKITSGPVLDKPSDLAGLLTNLETNDVLFIDEIHRLNPIVEEYLYSAMEDYKIDIMLDSG 146 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR+++I L+ FTLI ATTR GLLT+PL+ RFGI RL +Y+ + L TIV+R + G Sbjct: 147 PSARTIQIALNPFTLIGATTRAGLLTSPLRARFGIKARLEYYDADLLSTIVRRSCAILGT 206 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +A+ EIA RSRGTPRIA LLRR RDFA+V TIT EIA AL L +D+ G D Sbjct: 207 PIEHDASYEIAFRSRGTPRIANNLLRRTRDFAQVKGDGTITLEIAKMALDALEVDQKGLD 266 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R LT I F GGPVG+ TI+ E + IE++ EP++I QGFI+RTPRGR Sbjct: 267 EMDNRILTTIIDKFRGGPVGLSTIATACGEEAETIEEVYEPFLIMQGFIKRTPRGREATE 326 Query: 322 IAWQHLGIDIPHR 334 A+QHLG +P++ Sbjct: 327 EAYQHLGKTLPNK 339 >gi|257063441|ref|YP_003143113.1| Holliday junction DNA helicase subunit RuvB [Slackia heliotrinireducens DSM 20476] gi|256791094|gb|ACV21764.1| Holliday junction DNA helicase subunit RuvB [Slackia heliotrinireducens DSM 20476] Length = 346 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 172/308 (55%), Positives = 228/308 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+++ GQ +L + I+AAK R E +DHVLF GPPGLGKTTLA VVA ELG N Sbjct: 36 LRPKHLDDYIGQTRVKDSLSILIQAAKQRGECMDHVLFSGPPGLGKTTLATVVANELGAN 95 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP IA+ GDLAA+LTNLED DVLFIDEIHRL+ VEE+LYPA+ED+ LD++VG+G Sbjct: 96 IRTTSGPAIARTGDLAAILTNLEDGDVLFIDEIHRLNRQVEEVLYPALEDYVLDIVVGKG 155 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS++++L +FTL+ ATTR GLLT PL+DRFGI RL++Y E+L IV+R A + + Sbjct: 156 PAARSIRLDLPKFTLVGATTRTGLLTGPLRDRFGIVFRLDYYTPEELAGIVKRSAGILDV 215 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ +E A EIA RSRGTPR+A R+L+RVRD+A+V I + A AL +D +G D Sbjct: 216 AIDEEGALEIARRSRGTPRLANRMLKRVRDWAQVRGTGDIDEDTAAQALSFFEVDSLGLD 275 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD + L ++ F G PVG+ T+++ LSE D +ED+ EPY+IQQG I RTP+GR Sbjct: 276 ALDNKILELLCVGFDGRPVGLSTLASALSEDPDTVEDVYEPYLIQQGLIMRTPKGRQATD 335 Query: 322 IAWQHLGI 329 A++H+GI Sbjct: 336 RAFEHIGI 343 >gi|154149662|ref|YP_001403280.1| Holliday junction DNA helicase RuvB [Candidatus Methanoregula boonei 6A8] gi|166231501|sp|A7I4H6|RUVB_METB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|153998214|gb|ABS54637.1| Holliday junction DNA helicase RuvB [Methanoregula boonei 6A8] Length = 335 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 184/326 (56%), Positives = 239/326 (73%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E ++S +DAD LRP TLE F GQ A + L++ I AA+ R E +DH+LF GPPG Sbjct: 3 ERVISPEPVPDDADEITLRPSTLEAFVGQEPAKNALRIAIAAARKRGEPIDHILFAGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++ARE+G R+T+GPV+ K GD+AA+ T L++ DVLFIDEIHR++ +VEEI Sbjct: 63 LGKTTLAHIIAREMGAAIRTTTGPVLEKTGDMAAIATALQNGDVLFIDEIHRMNPVVEEI 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF +D+M+GEGPSARS+K+ L RFTLI ATTR GLL++P +DRFG+ IRLN Y Sbjct: 123 LYPAMEDFFIDVMIGEGPSARSIKLTLERFTLIGATTRQGLLSSPFRDRFGLLIRLNLYS 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 EDL+ IV R A++ + +T + A IA RSRGTPRIA RLLRRVRD+A V TIT E Sbjct: 183 PEDLEKIVTRSAEILRIPITPKGAAVIASRSRGTPRIANRLLRRVRDYAVVEGDGTITAE 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 IA A L L ID++G D +D R L++IA +FGGGPVG +TI+ + E IE++ EPY+ Sbjct: 243 IAGAGLALLQIDELGLDDIDRRILSVIAGDFGGGPVGAKTIAISVGEEVRTIEEVYEPYL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330 IQ GF++RTP+GR P A HL ++ Sbjct: 303 IQIGFVKRTPQGRETTPAALAHLKLN 328 >gi|332876892|ref|ZP_08444646.1| Holliday junction DNA helicase RuvB [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685175|gb|EGJ58018.1| Holliday junction DNA helicase RuvB [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 340 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 177/319 (55%), Positives = 229/319 (71%), Gaps = 1/319 (0%) Query: 11 NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N S ++ DI LRP + ++F GQ NLKVF++AA R EALDH LF GPPGLGKTT Sbjct: 11 NYSAQELDIERALRPLSFDDFAGQEAVLENLKVFVKAANMRNEALDHTLFHGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A ELGV + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS +VEE LY AM Sbjct: 71 LAHILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPVVEEYLYSAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D+M+ GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI RL +Y E L Sbjct: 131 EDYKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLA 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 I+QR A + + ++ EAA E+A RSRGTPRIA LLRR+RDFA++ I EI Sbjct: 191 DIIQRSASILKMPISMEAAIELASRSRGTPRIANALLRRIRDFAQIKGNGKIDIEITRFG 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D G D++D R L+ + F GGPVGI T++ +SE + IE++ EP++IQQGF Sbjct: 251 LKALNVDAHGLDEMDNRILSTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQGF 310 Query: 310 IQRTPRGRLLMPIAWQHLG 328 I RTPRGR + +A++HLG Sbjct: 311 IVRTPRGREVTELAYKHLG 329 >gi|225025939|ref|ZP_03715131.1| hypothetical protein EUBHAL_00175 [Eubacterium hallii DSM 3353] gi|224956725|gb|EEG37934.1| hypothetical protein EUBHAL_00175 [Eubacterium hallii DSM 3353] Length = 334 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 175/333 (52%), Positives = 234/333 (70%), Gaps = 3/333 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MDR ++S + +ED + LRP+ L E+ GQ + NL+VFIEAAK R E+LDHVL Sbjct: 1 MDR--MISTELMEEDIAVEGSLRPQNLSEYIGQEKVKKNLRVFIEAAKMRGESLDHVLLY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+ N + TSGP I K G++AA+L L D DVLFIDEIHRL+ Sbjct: 59 GPPGLGKTTLAGIIANEMDSNLKITSGPAIEKPGEIAAVLNGLSDGDVLFIDEIHRLNRQ 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF +D+M+G+G SA+S+++ L FTL+ ATTR G+LT PL+DRFG+ RL Sbjct: 119 VEEVLYPAMEDFSIDIMIGKGASAKSIRLELPHFTLVGATTRAGMLTAPLRDRFGVVNRL 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E+LK IV+R A+L G+ + + A E+ RSRGTPR+A RLL+RVRDFA+V + Sbjct: 179 EFYTDEELKVIVERSAELLGVKIDEAGAMEVGKRSRGTPRLANRLLKRVRDFAQVRYDGM 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT E+A AL L +D MG D D L + F G PVG++T++A + E IED+ Sbjct: 239 ITYEVAQTALNLLEVDSMGLDATDRNLLEAMITKFMGKPVGLDTLAAAIGEDSGTIEDVY 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EP++IQ+G I+RTPRGR L A++H+G +P Sbjct: 299 EPFLIQRGLIKRTPRGRALTAFAYEHMGYPVPE 331 >gi|281422347|ref|ZP_06253346.1| holliday junction DNA helicase RuvB [Prevotella copri DSM 18205] gi|281403578|gb|EFB34258.1| holliday junction DNA helicase RuvB [Prevotella copri DSM 18205] Length = 344 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 173/307 (56%), Positives = 225/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +F+GQ NL+VF+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLKFSDFSGQNGVVENLEVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ L+ I++R A L + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPATLQKIIKRSAMLLKV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEAA EI+ RSRGTPRIA LLRRVRDFA+V TIT IA AL L ID+ G D Sbjct: 203 PIEDEAAVEISRRSRGTPRIANSLLRRVRDFAQVKGNGTITYGIAQMALKALNIDQYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + LT I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR+ P Sbjct: 263 EIDNKILTTIIDKFRGGPVGVSTIATAIGEDGGTVEEVYEPFLIMEGFIKRTPRGRMATP 322 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 323 LAYEHLG 329 >gi|312877190|ref|ZP_07737159.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor lactoaceticus 6A] gi|311795999|gb|EFR12359.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor lactoaceticus 6A] Length = 338 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 170/323 (52%), Positives = 228/323 (70%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E LL S ED LRP+TLE++ GQ + +K+FIEAAK R E LDHVL GPPG Sbjct: 2 ERLLDNKFSVEDVHEESLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+ +EE+ Sbjct: 62 LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED ++D+M+G+GPSA+++++ L FTLI ATTR GLL++PL+DRFGI RL++Y Sbjct: 122 LYPAMEDKKVDIMIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+L IV R A + + EA EIA RSRGTPR+A RLLRR+RD+A V H +IT E Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A + L +D+ G D +D L I FGGGPVG+ TI+A + E IED+ EPY+ Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301 Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327 IQ+GF+ +T RGR+ A H+ Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324 >gi|222474858|ref|YP_002563273.1| Holliday junction DNA helicase (ruvB) [Anaplasma marginale str. Florida] gi|254994713|ref|ZP_05276903.1| Holliday junction DNA helicase RuvB [Anaplasma marginale str. Mississippi] gi|255002827|ref|ZP_05277791.1| Holliday junction DNA helicase RuvB [Anaplasma marginale str. Puerto Rico] gi|255003959|ref|ZP_05278760.1| Holliday junction DNA helicase RuvB [Anaplasma marginale str. Virginia] gi|269959098|ref|YP_003328887.1| Holliday junction DNA helicase B [Anaplasma centrale str. Israel] gi|254767405|sp|B9KHQ5|RUVB_ANAMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|222418994|gb|ACM49017.1| Holliday junction DNA helicase (ruvB) [Anaplasma marginale str. Florida] gi|269848929|gb|ACZ49573.1| Holliday junction DNA helicase B [Anaplasma centrale str. Israel] Length = 331 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 180/327 (55%), Positives = 233/327 (71%), Gaps = 3/327 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M + L ED LRP +EEF GQ E NLKVFI++A R E +DHVL G Sbjct: 1 MSNDTLHKYEALPEDHRNVALRPCLIEEFVGQTEVIKNLKVFIQSAYERREPMDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+ DVLFIDEIHRL+ + Sbjct: 61 PPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQPMDVLFIDEIHRLNRNI 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMED+ LD++VGEG AR++KI++ FTLI ATTR GL++NPL+DRFGIP+ L Sbjct: 121 EEVLYSAMEDYCLDIVVGEGCGARTLKIDIPAFTLIGATTRFGLISNPLRDRFGIPLHLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-T 240 FY +++L +++R A + ++ D A EIA RSRGTPRIA RL RRVRDF E T Sbjct: 181 FYSVDELVLVIKRAAGVICTSIDDSGAREIASRSRGTPRIALRLFRRVRDFLEFERKHGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I A++AL RL ID GFD++DL+YL + GPVGI+TI++ LSE IE+ I Sbjct: 241 IDGNFANSALFRLGIDGAGFDKMDLKYLKFVFE--AKGPVGIDTIASALSEDVGNIEETI 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EPY+I+ FIQRTPRGR+L +++L Sbjct: 299 EPYLIKTCFIQRTPRGRVLTQKGFEYL 325 >gi|148543763|ref|YP_001271133.1| Holliday junction DNA helicase RuvB [Lactobacillus reuteri DSM 20016] gi|184153169|ref|YP_001841510.1| Holliday junction DNA helicase RuvB [Lactobacillus reuteri JCM 1112] gi|227363257|ref|ZP_03847389.1| Holliday junction DNA helicase B [Lactobacillus reuteri MM2-3] gi|325682135|ref|ZP_08161653.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus reuteri MM4-1A] gi|172048235|sp|A5VIX2|RUVB_LACRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|229890172|sp|B2G6E8|RUVB_LACRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|148530797|gb|ABQ82796.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus reuteri DSM 20016] gi|183224513|dbj|BAG25030.1| holliday junction DNA helicase RuvB [Lactobacillus reuteri JCM 1112] gi|227071713|gb|EEI10004.1| Holliday junction DNA helicase B [Lactobacillus reuteri MM2-3] gi|324978779|gb|EGC15728.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus reuteri MM4-1A] Length = 338 Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 174/334 (52%), Positives = 240/334 (71%), Gaps = 2/334 (0%) Query: 1 MMDREGLLSRNVS-QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M + G+LS + S +E++ + + LRP+ L E+ GQ + L+V+I+AA++R EALDHVL Sbjct: 1 MENDHGILSDHPSGEEESQVEITLRPQKLREYIGQPKIKHELEVYIKAAQSREEALDHVL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA V+A E+GVN R+TSGP I K GDL ALL L+ DVLF+DEIHRL Sbjct: 61 LYGPPGLGKTTLAMVIANEMGVNIRTTSGPAIEKPGDLVALLNELKPGDVLFVDEIHRLP 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEE+LY AMED+ +D+++GEGP+A V L FTLI ATTR G+L+ PL+DRFGI Sbjct: 121 KVVEEMLYSAMEDYYIDIVIGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 +N+Y ++L I+ R AK+ ++ DE A E+++RSRGTPRIA RLL+RVRDFA+VA Sbjct: 181 HMNYYTQDELTKIIFRSAKIFHTSIQDEGAHELSLRSRGTPRIANRLLKRVRDFAQVAGK 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 ++I I AL L +D G D++D + L + + GGPVG++TI+A + E + IE+ Sbjct: 241 QSIDSAIVKQALSLLQVDDRGLDEIDRKMLLTMINFYHGGPVGLKTIAANIGEETNTIEE 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 + EPY++Q GFI RTPRGRL+ P A++HLGI+ P Sbjct: 301 MYEPYLLQIGFISRTPRGRLVTPTAYEHLGIEYP 334 >gi|110802636|ref|YP_699224.1| Holliday junction DNA helicase RuvB [Clostridium perfringens SM101] gi|123341652|sp|Q0SRN3|RUVB_CLOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|110683137|gb|ABG86507.1| Holliday junction DNA helicase RuvB [Clostridium perfringens SM101] Length = 346 Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 170/307 (55%), Positives = 227/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + E+ GQ + L +FI+AA+ R EALDHV+ GPPGLGKTTLA ++A E+G N Sbjct: 21 LRPEKINEYIGQDKVKERLNIFIKAAQRRGEALDHVILYGPPGLGKTTLANIIANEMGGN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I +AGDLAA+LT L DVLFIDEIHRL+ VEEILYPAMED+ LD+++G+G Sbjct: 81 LKITSGPAIERAGDLAAILTTLNTNDVLFIDEIHRLNRSVEEILYPAMEDYVLDIIIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +++S++++L +FTLI ATTR+G+L++PL+DRFG+ + +Y E LK I+ R A++ G Sbjct: 141 AASKSIRLDLPKFTLIGATTRIGMLSSPLRDRFGVLCSMEYYTDEQLKEIIIRSAEILGC 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T+E A EIA RSRGTPRIA RLL+RVRDFAEV + IT E A +L L +D GFD Sbjct: 201 HITEEGAFEIAKRSRGTPRIANRLLKRVRDFAEVLYDNEITEEAAKKSLEILEVDGEGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I NF GGPVGIET++ + E D IED+ EPY++Q+GFI RTPRGR+ Sbjct: 261 RIDNKILEAIIDNFNGGPVGIETLAYFVGEELDTIEDVYEPYLLQKGFIVRTPRGRMATD 320 Query: 322 IAWQHLG 328 A++HLG Sbjct: 321 KAYKHLG 327 >gi|198282211|ref|YP_002218532.1| Holliday junction DNA helicase RuvB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666868|ref|YP_002424576.1| Holliday junction DNA helicase RuvB [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246732|gb|ACH82325.1| Holliday junction DNA helicase RuvB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519081|gb|ACK79667.1| Holliday junction DNA helicase RuvB [Acidithiobacillus ferrooxidans ATCC 23270] Length = 340 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 178/331 (53%), Positives = 236/331 (71%), Gaps = 1/331 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MDR G L+ + DA LRPR L E+ GQ + +L ++I+AA+ R+EALDHVL G Sbjct: 1 MDR-GPLNPQEAHNDAVDHALRPRRLAEYLGQAKLRESLGLYIDAARGRSEALDHVLLFG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A+E+G + TSGPV+ K GDLAA+LTNL+ DVLF+DEIHRLS +V Sbjct: 60 PPGLGKTTLAHIIAQEMGAGLKVTSGPVLDKPGDLAAILTNLQPHDVLFVDEIHRLSPVV 119 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPA+ED++LD+++GEGP+ARS+KI+L FTLI ATTR GLLT+PL+DRFGI L Sbjct: 120 EEILYPALEDYELDILIGEGPAARSIKISLPPFTLIGATTRAGLLTSPLRDRFGISFHLE 179 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY +L IV R A++ G E A EIA R+RGTPRIA RLLRRVRD+A+V I Sbjct: 180 FYSDAELTQIVTRSARILGTPQALEGAQEIARRARGTPRIANRLLRRVRDYAQVRGNGEI 239 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 A AAL + +D+ GFD D + L + F GGPVG+E+++A + E R IED++E Sbjct: 240 DMATAQAALTLMEVDRHGFDGQDRKLLQAVISRFAGGPVGVESLAAAIGEERGTIEDVLE 299 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 P++IQ+G++ RTPRGR +++ LG+ P Sbjct: 300 PFLIQRGYLIRTPRGRCATELSYLALGLPAP 330 >gi|327312927|ref|YP_004328364.1| Holliday junction DNA helicase RuvB [Prevotella denticola F0289] gi|326945744|gb|AEA21629.1| Holliday junction DNA helicase RuvB [Prevotella denticola F0289] Length = 344 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 173/307 (56%), Positives = 224/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +F+GQ + NL VF+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLRFSDFSGQQKVVENLSVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E LK I++R A+L + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPETLKRIIKRSAQLLKV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+AA EIA RSRGTPRI LLRRVRDFA+V TIT EIA +L L IDK G D Sbjct: 203 PIVDDAAIEIARRSRGTPRICNSLLRRVRDFAQVKGNGTITLEIASLSLQSLNIDKYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR+ Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVATQ 322 Query: 322 IAWQHLG 328 +A+ HLG Sbjct: 323 LAYSHLG 329 >gi|146299402|ref|YP_001193993.1| Holliday junction DNA helicase B [Flavobacterium johnsoniae UW101] gi|189046032|sp|A5FJE5|RUVB_FLAJO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|146153820|gb|ABQ04674.1| Holliday junction DNA helicase RuvB [Flavobacterium johnsoniae UW101] Length = 340 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 179/321 (55%), Positives = 230/321 (71%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 ++ + E+ D+ LRP + ++F GQ + NLKVF+ AA R EALDH LF GPPGLGK Sbjct: 9 TKGYNSEELDLEKRLRPLSFDDFAGQDQVLENLKVFVAAANQRGEALDHALFHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A EL V + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY Sbjct: 69 TTLANILANELEVGIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMEDF++D+M+ GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI RL +Y E Sbjct: 129 AMEDFKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGISSRLQYYSTEL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV+R A + + + EAA EIA RSRGTPRIA LLRRVRDFA++ TI EI+ Sbjct: 189 LTTIVERSAGILKMPIDLEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGTIDLEISK 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D G D++D + L I F GGPVG+ T++ +SE + IE++ EP++IQ+ Sbjct: 249 YALKALNVDAHGLDEMDNKILLTIINKFKGGPVGLSTLATAVSESSETIEEVYEPFLIQE 308 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 GFI RTPRGR + A++HLG Sbjct: 309 GFIMRTPRGREVTEKAYKHLG 329 >gi|282882987|ref|ZP_06291591.1| holliday junction DNA helicase RuvB [Peptoniphilus lacrimalis 315-B] gi|281297194|gb|EFA89686.1| holliday junction DNA helicase RuvB [Peptoniphilus lacrimalis 315-B] Length = 334 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 174/326 (53%), Positives = 232/326 (71%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E ++ N S ED LRP+ L ++ GQ + + LK+FI+AAK R E LDH L GPPG Sbjct: 3 ERIIDANFSVEDKQEINLRPKWLLDYIGQDKVINKLKIFIKAAKNRKEPLDHTLLSGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A E+GVN + TSGP I + GDLA++LTNL++ DVLFIDEIHRL+ VEEI Sbjct: 63 LGKTTLAGIIANEMGVNIKVTSGPAIERQGDLASILTNLKEDDVLFIDEIHRLNKSVEEI 122 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED+ LD+++G+GPSARS++++L++FTLI ATTR G+LT+PL+DRFG+ + + Y Sbjct: 123 LYPAMEDYALDIIIGKGPSARSIRLDLAKFTLIGATTRSGMLTSPLRDRFGVLLNMELYS 182 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 I+ L IV A++ + + E A EIA RSRGTPRIA RLL+RVRD+AEV IT + Sbjct: 183 IDALTKIVISSAEILNIPIEKEGALEIAKRSRGTPRIANRLLKRVRDYAEVVERGVITEK 242 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A L L IDK G D +D + + + NF G PVGI+ ISA + E R +ED+ EPY+ Sbjct: 243 VAVKGLNLLEIDKYGLDNIDRKIILTMIENFVGRPVGIDAISASIGEDRITVEDVYEPYL 302 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330 +Q GFI RTPRGRL A+ H G++ Sbjct: 303 MQIGFIVRTPRGRLATKKAYDHFGLE 328 >gi|56416489|ref|YP_153563.1| Holliday junction DNA helicase B [Anaplasma marginale str. St. Maries] gi|81821306|sp|Q5PBM1|RUVB_ANAMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|56387721|gb|AAV86308.1| holliday junction DNA helicase [Anaplasma marginale str. St. Maries] Length = 331 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 180/327 (55%), Positives = 233/327 (71%), Gaps = 3/327 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M + L ED LRP +EEF GQ E NLKVFI++A R E +DHVL G Sbjct: 1 MSSDTLHKYEALPEDHRNVALRPCLIEEFVGQTEVIKNLKVFIQSAYERREPMDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+ DVLFIDEIHRL+ + Sbjct: 61 PPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQPMDVLFIDEIHRLNRNI 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMED+ LD++VGEG AR++KI++ FTLI ATTR GL++NPL+DRFGIP+ L Sbjct: 121 EEVLYSAMEDYCLDIVVGEGCGARTLKIDIPAFTLIGATTRFGLISNPLRDRFGIPLHLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-T 240 FY +++L +++R A + ++ D A EIA RSRGTPRIA RL RRVRDF E T Sbjct: 181 FYSVDELVLVIKRAAGVICTSIDDSGAREIASRSRGTPRIALRLFRRVRDFLEFERKHGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I A++AL RL ID GFD++DL+YL + GPVGI+TI++ LSE IE+ I Sbjct: 241 IDGNFANSALFRLGIDGAGFDKMDLKYLKFVFE--AKGPVGIDTIASALSEDVGNIEETI 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EPY+I+ FIQRTPRGR+L +++L Sbjct: 299 EPYLIKTCFIQRTPRGRVLTQKGFEYL 325 >gi|110799933|ref|YP_696627.1| Holliday junction DNA helicase RuvB [Clostridium perfringens ATCC 13124] gi|168204869|ref|ZP_02630874.1| holliday junction DNA helicase RuvB [Clostridium perfringens E str. JGS1987] gi|168208648|ref|ZP_02634273.1| holliday junction DNA helicase RuvB [Clostridium perfringens B str. ATCC 3626] gi|168214132|ref|ZP_02639757.1| holliday junction DNA helicase RuvB [Clostridium perfringens CPE str. F4969] gi|168215573|ref|ZP_02641198.1| holliday junction DNA helicase RuvB [Clostridium perfringens NCTC 8239] gi|169343509|ref|ZP_02864508.1| holliday junction DNA helicase RuvB [Clostridium perfringens C str. JGS1495] gi|182624456|ref|ZP_02952240.1| holliday junction DNA helicase RuvB [Clostridium perfringens D str. JGS1721] gi|123344604|sp|Q0TP13|RUVB_CLOP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|110674580|gb|ABG83567.1| Holliday junction DNA helicase RuvB [Clostridium perfringens ATCC 13124] gi|169298069|gb|EDS80159.1| holliday junction DNA helicase RuvB [Clostridium perfringens C str. JGS1495] gi|170663662|gb|EDT16345.1| holliday junction DNA helicase RuvB [Clostridium perfringens E str. JGS1987] gi|170712997|gb|EDT25179.1| holliday junction DNA helicase RuvB [Clostridium perfringens B str. ATCC 3626] gi|170714356|gb|EDT26538.1| holliday junction DNA helicase RuvB [Clostridium perfringens CPE str. F4969] gi|177910459|gb|EDT72836.1| holliday junction DNA helicase RuvB [Clostridium perfringens D str. JGS1721] gi|182382068|gb|EDT79547.1| holliday junction DNA helicase RuvB [Clostridium perfringens NCTC 8239] Length = 346 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 170/307 (55%), Positives = 227/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + E+ GQ + L +FI+AA+ R EALDHV+ GPPGLGKTTLA ++A E+G N Sbjct: 21 LRPEKINEYIGQDKVKERLNIFIKAAQRREEALDHVILYGPPGLGKTTLANIIANEMGGN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I +AGDLAA+LT L DVLFIDEIHRL+ VEEILYPAMED+ LD+++G+G Sbjct: 81 LKITSGPAIERAGDLAAILTTLNTNDVLFIDEIHRLNRSVEEILYPAMEDYVLDIIIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +++S++++L +FTLI ATTR+G+L++PL+DRFG+ + +Y E LK I+ R A++ G Sbjct: 141 AASKSIRLDLPKFTLIGATTRIGMLSSPLRDRFGVLCSMEYYTDEQLKEIIIRSAEILGC 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T+E A EIA RSRGTPRIA RLL+RVRDFAEV + IT E A +L L +D GFD Sbjct: 201 HITEEGAFEIAKRSRGTPRIANRLLKRVRDFAEVLYDNEITEEAAKKSLEILEVDGEGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I NF GGPVGIET++ + E D IED+ EPY++Q+GFI RTPRGR+ Sbjct: 261 RIDNKILEAIIDNFNGGPVGIETLAYFVGEELDTIEDVYEPYLLQKGFIVRTPRGRMATD 320 Query: 322 IAWQHLG 328 A++HLG Sbjct: 321 KAYKHLG 327 >gi|325859879|ref|ZP_08173009.1| Holliday junction DNA helicase RuvB [Prevotella denticola CRIS 18C-A] gi|325482805|gb|EGC85808.1| Holliday junction DNA helicase RuvB [Prevotella denticola CRIS 18C-A] Length = 344 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 173/307 (56%), Positives = 224/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +F+GQ + NL VF+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLRFSDFSGQQKVVENLSVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E LK I++R A+L + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPETLKRIIKRSAQLLKV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+AA EIA RSRGTPRI LLRRVRDFA+V TIT EIA +L L IDK G D Sbjct: 203 PIVDDAAIEIARRSRGTPRICNSLLRRVRDFAQVKGNGTITPEIASLSLQSLNIDKYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR+ Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVATQ 322 Query: 322 IAWQHLG 328 +A+ HLG Sbjct: 323 LAYSHLG 329 >gi|323342038|ref|ZP_08082271.1| crossover junction ATP-dependent DNA helicase RuvB [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464463|gb|EFY09656.1| crossover junction ATP-dependent DNA helicase RuvB [Erysipelothrix rhusiopathiae ATCC 19414] Length = 336 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 179/334 (53%), Positives = 233/334 (69%), Gaps = 5/334 (1%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 +M E +LS +E LRP+TL + GQ NLK+FIEAAK+R EALDH+LF Sbjct: 5 LMSGEAILSGQDYEES-----LRPQTLSAYVGQEGLKENLKIFIEAAKSRNEALDHLLFY 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTT+A V+A E+ + TSGP I ++GDLAA+L++LE DVLFIDEIHR+ Sbjct: 60 GPPGLGKTTIAHVIANEMQTGIKVTSGPSIERSGDLAAILSSLEPGDVLFIDEIHRMPKA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LDL+VG+ S RS++I+L FTLI ATTR G L++PL+DRFGI +L Sbjct: 120 VEEVLYPAMEDFTLDLVVGKDSSTRSIQIDLPPFTLIGATTRAGDLSSPLRDRFGIISKL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y ++L+TIV R +++ + E EIA RSRGTPRIA RL RRVRDFA+V + Sbjct: 180 EYYSQDELETIVSRTSRVLNTVIDREGVSEIAKRSRGTPRIANRLFRRVRDFAQVLNDNV 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + I AL +L +D +G D +DLRYL I F GGPVGIE I+A +SE +ED+ Sbjct: 240 VDISITKLALDKLKVDHLGLDDVDLRYLRGIIERFDGGPVGIEAIAASISEETMTLEDVY 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY++Q GFI RTPRGR++ A++HL ID+ R Sbjct: 300 EPYLLQLGFINRTPRGRVVTTKAYEHLKIDVNQR 333 >gi|313904086|ref|ZP_07837466.1| Holliday junction DNA helicase RuvB [Eubacterium cellulosolvens 6] gi|313471235|gb|EFR66557.1| Holliday junction DNA helicase RuvB [Eubacterium cellulosolvens 6] Length = 330 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 170/326 (52%), Positives = 236/326 (72%), Gaps = 1/326 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++ V QED + LRP+TL+E+ GQ +A +NL+V+I+AAK R + LDHVLF GPPGL Sbjct: 5 IIQTEVQQEDEPVEKSLRPQTLDEYIGQEKAKNNLRVYIQAAKQRGDVLDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+G + + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLAGIIANEMGTHMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+M+G+G SARS+++ L +FTL+ ATTR GLLT PL+DRFG+ + FY Sbjct: 125 YPAMEDYAIDIMIGKGASARSIRLELPKFTLVGATTRAGLLTAPLRDRFGVIEHMEFYTT 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+L IV+ A++ + + + A E+A RSRGTPR++ RLLRRVRDFA V + ITRE+ Sbjct: 185 EELTEIVEHSARVLDVEIDRDGAVEMARRSRGTPRLSNRLLRRVRDFAMVQYDGRITREV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +DK G DQ D R L I F GGPVG++T++A + + IED+ EPY+I Sbjct: 245 ARTALDLLQVDKFGLDQTDRRILLTIIEKFQGGPVGLDTLAAAIGDDSGTIEDVYEPYLI 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331 + GFI RT GR+ +A++HLG+ + Sbjct: 305 KNGFINRTHSGRVATELAYRHLGLQM 330 >gi|311031508|ref|ZP_07709598.1| Holliday junction DNA helicase RuvB [Bacillus sp. m3-13] Length = 337 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 174/334 (52%), Positives = 244/334 (73%), Gaps = 3/334 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++S++ + E+ + LRP+TL+++ GQ + NL+VFI+AAK R E LDHVL Sbjct: 1 MDDR--MVSQDATLEEHSLEYSLRPQTLQQYIGQDKVKENLEVFIQAAKMRQETLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+GV R+T+GP I + GDLAA+L+ LE DVLFIDEIHRL Sbjct: 59 YGPPGLGKTTLAAIIANEMGVQLRTTAGPAIERPGDLAAILSALEPGDVLFIDEIHRLHR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMED+ LD+++G+GP+++SV+++L FTL+ ATTRVGLLT PL+DRFG+ R Sbjct: 119 SIEEVLYPAMEDYCLDIVIGKGPTSKSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y E L I R A++ + + +AA EI+ R+RGTPRIA RLLRRVRDFA+V Sbjct: 179 LEYYNEEQLTEICLRTAQILEIGLELDAATEISRRARGTPRIANRLLRRVRDFAQVLGKD 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ +A AL RL +DK+G D +D + L I F GGPVG++TI+A + E IED+ Sbjct: 239 TISASLAKEALDRLQVDKLGLDHIDHKLLMGIIEKFRGGPVGVDTIAATIGEESHTIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY++Q GF+QRTPRGR++ + ++H +++P+ Sbjct: 299 YEPYLLQIGFLQRTPRGRVVTDLVYRHFNMEVPN 332 >gi|313677438|ref|YP_004055434.1| holliday junction DNA helicase ruvb [Marivirga tractuosa DSM 4126] gi|312944136|gb|ADR23326.1| Holliday junction DNA helicase RuvB [Marivirga tractuosa DSM 4126] Length = 342 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 177/329 (53%), Positives = 240/329 (72%), Gaps = 4/329 (1%) Query: 4 REGLLS---RNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 RE L+ N++ E+ + LRP + +FTGQ + N++VF++AAK R+E LDHVL Sbjct: 2 REDFLTGDDENLNPEEKEFEKALRPLSFGDFTGQQKTVDNIQVFVQAAKKRSEPLDHVLL 61 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A ELG + + TSGPV+ K GDLA LLTNLE+ DVLFIDEIHRL+ Sbjct: 62 HGPPGLGKTTLSHIIANELGSSLKVTSGPVLDKPGDLAGLLTNLEEGDVLFIDEIHRLNA 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE LY AMEDF++D+M+ GP+ARSV+I+LS FTLI ATTR GLLT+PL+ RFGI R Sbjct: 122 VVEEYLYSAMEDFRIDIMLDSGPNARSVQISLSPFTLIGATTRSGLLTSPLRARFGINAR 181 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y+ E LK I++R A + + ++AA EIA RSRGTPRI+ LLRR RDFAE+ Sbjct: 182 LEYYDAELLKKIIKRSAAILNTPLQEDAAFEIARRSRGTPRISNTLLRRTRDFAEIKGDG 241 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TIT+EIA+ AL L +D+ G D++D R L+ I F GGPVG+ TI+ + E D IE++ Sbjct: 242 TITKEIAEFALNALDVDQHGLDEMDNRILSTIIEKFNGGPVGLGTIATAVGEEADTIEEV 301 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EP++I++G+++RT RGR +A++HLG Sbjct: 302 YEPFLIKEGYLKRTARGRQATELAYKHLG 330 >gi|313608654|gb|EFR84501.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL F2-208] Length = 335 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 181/329 (55%), Positives = 232/329 (70%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + S V E+ + LRP+TL ++ GQ + +NL VFIEAA R EALDHVL Sbjct: 1 MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+G ++TSGP I + GDLA +LT+LE DVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+ LD+++G GP+ARSV+++L FTLI ATTR GLL+ PL+DRFG+ L Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E L IV R + + + D A EIA RSRGTPRIA RLL+RVRDFA+V T Sbjct: 181 EFYTEEQLTEIVLRTSNILNTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +D G D +D + L I ++F GGPVG++TI+A + E R+ IED+ Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QRTPRGR+ A+ HLGI Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329 >gi|288801738|ref|ZP_06407180.1| holliday junction DNA helicase RuvB [Prevotella melaninogenica D18] gi|288335780|gb|EFC74213.1| holliday junction DNA helicase RuvB [Prevotella melaninogenica D18] Length = 344 Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 174/307 (56%), Positives = 223/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +F+GQ + NL VF+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLKFNDFSGQSKVVENLSVFVEAAKFRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E LK I++R A L + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPETLKRIIKRSATLLKV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEAA EIA RSRGTPRI LLRRVRDFA+V TIT EIA +L L IDK G D Sbjct: 203 PIVDEAADEIARRSRGTPRICNALLRRVRDFAQVKGNGTITPEIATMSLQSLNIDKYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR+ Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVATQ 322 Query: 322 IAWQHLG 328 +A+ HLG Sbjct: 323 LAYDHLG 329 >gi|299144016|ref|ZP_07037096.1| holliday junction DNA helicase RuvB [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518501|gb|EFI42240.1| holliday junction DNA helicase RuvB [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 338 Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 171/316 (54%), Positives = 227/316 (71%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 + ++ + LRPR L E+ GQ + LK+FIEAAK R E LDH L GPPGLGKTTL+ ++ Sbjct: 15 DSSNDNTLRPRWLSEYVGQDKVVEKLKIFIEAAKNRHEPLDHCLLNGPPGLGKTTLSYII 74 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+GVN + TSGP I + GDLA++L+NL + DVLFIDEIHR++ VEE+LYPAMED+ L Sbjct: 75 ANEMGVNVKVTSGPAIERPGDLASILSNLNEDDVLFIDEIHRINRSVEEVLYPAMEDYAL 134 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+++G+GPSARS++++L +FTLI ATTR G LT+PL+DRFG+ + L Y+I+ L I+ R Sbjct: 135 DIIIGKGPSARSIRLDLEKFTLIGATTRSGQLTSPLRDRFGVILNLELYDIDSLTEIIMR 194 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + +A+ E A EIA RSRGTPRIA RLL+RVRD+AEV + IT+ +A L L Sbjct: 195 SADILNIAIEKEGAMEIACRSRGTPRIANRLLKRVRDYAEVKESGVITKRVAIKGLNLLD 254 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 IDK G D LD + + + NF G PVGI+ I+A + E R IED EPY++Q GFI RTP Sbjct: 255 IDKFGLDGLDRKIIRTMIENFMGRPVGIDAIAASIGEERVTIEDAYEPYLMQIGFINRTP 314 Query: 315 RGRLLMPIAWQHLGID 330 RGR+ A+ H GI+ Sbjct: 315 RGRVPTKAAYDHFGIE 330 >gi|289434812|ref|YP_003464684.1| holliday junction DNA helicase RuvB [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171056|emb|CBH27598.1| holliday junction DNA helicase RuvB [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633142|gb|EFS00031.1| holliday junction DNA helicase RuvB [Listeria seeligeri FSL N1-067] gi|313637716|gb|EFS03085.1| holliday junction DNA helicase RuvB [Listeria seeligeri FSL S4-171] Length = 335 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 180/329 (54%), Positives = 234/329 (71%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + S V E+ + LRP+TL ++ GQ + +NL VFIEAA R EALDHVL Sbjct: 1 MDERIISSETVDSEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+G ++TSGP I + GDLA +LT+L+ DVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLDPGDVLFIDEIHRLSRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EE+LYPAMED+ LD+++G GP+ARSV+++L FTLI ATTR GLL+ PL+DRFG+ L Sbjct: 121 IEEVLYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E L IV R A + + D A EIA RSRGTPRIA RLL+RVRDFA+V T Sbjct: 181 EFYTEEQLTEIVLRTANILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +D G D +D + L I ++F GGPVG++TI+A + E R+ IED+ Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QR+PRGR+ IA++HLGI Sbjct: 301 EPYLLQIGFLQRSPRGRIATEIAYKHLGI 329 >gi|332830260|gb|EGK02888.1| Holliday junction ATP-dependent DNA helicase ruvB [Dysgonomonas gadei ATCC BAA-286] Length = 340 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 173/307 (56%), Positives = 226/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP T F+GQ + NL+VF+ AAK R E+LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLTFNSFSGQSKVVENLQVFVTAAKMRGESLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA LLT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGLLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y+IE L I+ R A + + Sbjct: 143 PSARSIQIDLNPFTLIGATTRSGLLTSPLRARFGINMHLEYYDIETLTNIILRSANILDV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA EIA RSRGTPRIA LLRRVRDFA+V + I + IA +L L IDK G D Sbjct: 203 PTSKEAAVEIASRSRGTPRIANALLRRVRDFAQVKGSGKIDKAIAAYSLEALNIDKYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L ++ F GGPVGI TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 263 EIDNKILLILIDKFKGGPVGISTIATALGEDGGTIEEVYEPFLIKEGFMKRTPRGREVTE 322 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 323 LAYKHLG 329 >gi|302344853|ref|YP_003813206.1| Holliday junction DNA helicase RuvB [Prevotella melaninogenica ATCC 25845] gi|302149058|gb|ADK95320.1| Holliday junction DNA helicase RuvB [Prevotella melaninogenica ATCC 25845] Length = 344 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 174/307 (56%), Positives = 223/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +F+GQ + NL VF+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLKFNDFSGQSKVVENLSVFVEAAKFRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E LK I++R A L + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPETLKRIIKRSAALLKV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEAA EIA RSRGTPRI LLRRVRDFA+V TIT EIA +L L IDK G D Sbjct: 203 PIVDEAADEIARRSRGTPRICNALLRRVRDFAQVKGNGTITPEIATMSLQSLNIDKYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR+ Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVATQ 322 Query: 322 IAWQHLG 328 +A+ HLG Sbjct: 323 LAYDHLG 329 >gi|225568079|ref|ZP_03777104.1| hypothetical protein CLOHYLEM_04152 [Clostridium hylemonae DSM 15053] gi|225163032|gb|EEG75651.1| hypothetical protein CLOHYLEM_04152 [Clostridium hylemonae DSM 15053] Length = 335 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 173/321 (53%), Positives = 236/321 (73%), Gaps = 1/321 (0%) Query: 14 QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED I + LRP+ L ++ GQ +A LK++IEAAK R EALDHVLF GPPGLGKTTLA Sbjct: 12 EEDIKIENNLRPQLLTDYIGQEKAKETLKIYIEAAKERGEALDHVLFYGPPGLGKTTLAG 71 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+LYPAMEDF Sbjct: 72 IIANEMNVNMKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVLYPAMEDF 131 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+M+G+G +ARS++++L RFTL+ ATTR G+LT PL+DRFG+ RL FY +LKTI+ Sbjct: 132 AIDIMIGKGATARSIRLDLPRFTLVGATTRAGMLTAPLRDRFGVVNRLEFYTAGELKTII 191 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A++ + + + A +A RSRGTPR+A RLL+RVRDFA+V + IT E+A+ AL Sbjct: 192 LRSAQVLEVGIDERGADALARRSRGTPRLANRLLKRVRDFAQVKYDGYITEEVANYALDL 251 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +DK G DQ D L + F GGPVG++T++A + E IED+ EPY+++ GFIQR Sbjct: 252 LDVDKEGLDQTDRGLLLTMIDKFQGGPVGLDTLAAAVGEDAGTIEDVYEPYLLKNGFIQR 311 Query: 313 TPRGRLLMPIAWQHLGIDIPH 333 TPRGR++ A +HLGI + + Sbjct: 312 TPRGRVVTEAACRHLGISMEN 332 >gi|323489998|ref|ZP_08095219.1| Holliday junction DNA helicase RuvB [Planococcus donghaensis MPA1U2] gi|323396294|gb|EGA89119.1| Holliday junction DNA helicase RuvB [Planococcus donghaensis MPA1U2] Length = 332 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 173/311 (55%), Positives = 231/311 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ + NL++FIEAAK R E+LDHVL GPPGLGKTTLA V+A E+ VN Sbjct: 21 LRPQMLSQYIGQHKVKHNLQIFIEAAKMRQESLDHVLLYGPPGLGKTTLAAVIANEMEVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I + GDLAA++++LE DVLFIDEIHRL+ +EE+LYPAMEDF LD++VG+G Sbjct: 81 VKMTSGPAIERPGDLAAIVSSLEPGDVLFIDEIHRLNRAIEEVLYPAMEDFCLDIVVGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+++L FTLI ATTR G L+ PL+DRFG+ RL++Y+ E L IV R +KL Sbjct: 141 PTARSVRLDLPPFTLIGATTRAGALSAPLRDRFGVLSRLDYYDTEALTEIVIRSSKLFEA 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + AA EIA RSRGTPRIA RLL+RVRD+A+V TIT ++A+ AL L +D +G D Sbjct: 201 DINPNAAVEIARRSRGTPRIANRLLKRVRDYAQVRGTGTITMDMAEQALEMLQVDPLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + LT + F GGPVG++TI+A + E IED+ EPY++Q GFIQRTPRGR + Sbjct: 261 HIDHKLLTGMIERFRGGPVGLDTIAASIGEESTTIEDVYEPYLLQIGFIQRTPRGRTVTQ 320 Query: 322 IAWQHLGIDIP 332 +A++H +++P Sbjct: 321 LAYEHFKLEMP 331 >gi|285808236|gb|ADC35770.1| Holliday junction DNA helicase B [uncultured bacterium 293] Length = 341 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 177/306 (57%), Positives = 225/306 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E+ GQ + +NL+V IEAA +R EALDHVL GPPG+GKT+LA V+A ELG Sbjct: 22 LRPRRLTEYVGQAQVVANLRVAIEAANSRGEALDHVLLFGPPGVGKTSLAHVIAAELGAT 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+GP+I +AGDLAALLT LE R+VLF+DEIHRL VEEILYPA+ED+ LDLM+G G Sbjct: 82 IKATAGPIIERAGDLAALLTALEPREVLFVDEIHRLDARVEEILYPALEDYSLDLMIGSG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARS+KI L FTL+ ATTR GLLT PL+ RFGI RL+FY +L+ IV R A++ G+ Sbjct: 142 PGARSMKIPLKPFTLVGATTRAGLLTAPLRARFGIVHRLDFYSQPELEFIVTRSAQILGV 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA R+RGTPRIA RLLRRVRDFA+V IT +A AL L +D+ GFD Sbjct: 202 PIDAAGAAEIARRARGTPRIANRLLRRVRDFAQVRAEGAITLAVAQQALALLEVDESGFD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I FGGGPVG+ ++A +SE DAIE++ EP+++Q GFI RTPRGR+ Sbjct: 262 EVDRKLLLTIIDKFGGGPVGLGALAAAISEDADAIEEMYEPFLLQIGFIDRTPRGRVATR 321 Query: 322 IAWQHL 327 A++HL Sbjct: 322 RAYEHL 327 >gi|225012182|ref|ZP_03702619.1| Holliday junction DNA helicase RuvB [Flavobacteria bacterium MS024-2A] gi|225003737|gb|EEG41710.1| Holliday junction DNA helicase RuvB [Flavobacteria bacterium MS024-2A] Length = 339 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 178/321 (55%), Positives = 230/321 (71%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 + N + E+ DI LRP + +F GQ NLKVF++AAK R EALDH LF GPPGLGK Sbjct: 9 NENFTPEEQDIDRALRPLSFGDFAGQDAILENLKVFVQAAKQRDEALDHTLFHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++A EL V + TSGPV+ K GDLA LLTNL+ RD+LFIDEIHRLS IVEE LY Sbjct: 69 TTLAHILANELQVGIKLTSGPVLDKPGDLAGLLTNLQPRDILFIDEIHRLSPIVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+++D+M+ GP+AR+V+INL FTL+ ATTR GLLT P++ RFGI RL +Y E Sbjct: 129 AMEDYKIDIMIESGPNARTVQINLEPFTLVGATTRSGLLTAPMRARFGISNRLEYYSTEL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV+R +++ + + EAA EIA RSRGTPRI+ LLRRVRDFA++ TI +I Sbjct: 189 LSTIVERSSEILNVPIAQEAAIEIAGRSRGTPRISNALLRRVRDFAQIKGDGTIDMKITQ 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D G D++D + LT + F GGPVGI T++ +SE + IE++ EP++IQQ Sbjct: 249 YALKALQVDTHGLDEMDNKILTTLIDKFKGGPVGITTLATAVSENGETIEEVYEPFLIQQ 308 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 GFI RTPRGR + +A++HLG Sbjct: 309 GFIVRTPRGREVTELAYKHLG 329 >gi|257440215|ref|ZP_05615970.1| holliday junction DNA helicase RuvB [Faecalibacterium prausnitzii A2-165] gi|257197249|gb|EEU95533.1| holliday junction DNA helicase RuvB [Faecalibacterium prausnitzii A2-165] Length = 351 Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 170/327 (51%), Positives = 233/327 (71%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 ++ ++ D + + LRP+ LE++ GQ + NLK+++EAAK R E +DH+L GPPGLG Sbjct: 12 MMQPGLTAADNEENSLRPQHLEDYIGQDKVKQNLKIYLEAAKRRGEPMDHILLYGPPGLG 71 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A E+GV R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS VEE+LY Sbjct: 72 KTTLAGIIANEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLY 131 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PA+ED+ LD+M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L Y + Sbjct: 132 PALEDYALDIMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPD 191 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L I+QR A + +T E A E+A SRGTPR+A R L+RVRDFA V I R+++ Sbjct: 192 ELSRIIQRSAGILDQPITPEGAYELAKCSRGTPRVANRFLKRVRDFATVLGDGIIDRDVS 251 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 +L R+ +D +G D+LD L I + GGPVG+ET++A L E +EDL EPY++Q Sbjct: 252 LMSLKRMDVDALGLDELDRSLLRAIIEMYNGGPVGLETLAAALGEEAVTLEDLCEPYLMQ 311 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 GF+ RTPRGR +A++HLG+ P Sbjct: 312 MGFLTRTPRGRCATRLAYEHLGLKAPE 338 >gi|297529246|ref|YP_003670521.1| Holliday junction DNA helicase RuvB [Geobacillus sp. C56-T3] gi|297252498|gb|ADI25944.1| Holliday junction DNA helicase RuvB [Geobacillus sp. C56-T3] Length = 333 Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 171/313 (54%), Positives = 229/313 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + NLKVFIEAAK R E LDHVL GPPGLGKTTLA ++A E+GV Sbjct: 21 LRPQYLHEYIGQDKIKENLKVFIEAAKLREETLDHVLLYGPPGLGKTTLAVIIANEMGVE 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP + + GDLAALLT+LE DVLFIDEIHRL VEE+LYPAMED+ LD+ +G+G Sbjct: 81 LRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRAVEEVLYPAMEDYCLDIAIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+++++L FTL+ ATTR G L+ PL+DRFG+ RL +Y ++ L I++R A + + Sbjct: 141 PDARTLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYYHVDQLAQIIERAAAILQI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A R+RGTPRIA RLLRRVRDFA+V IT +A AL RL +D++G D Sbjct: 201 GIEREAALELARRARGTPRIANRLLRRVRDFAQVRGEGRITLPLAVEALERLQVDRLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + L+ + F GGPVG+ET++A + E IE++ EPY++Q G +QRTPRGR++ P Sbjct: 261 QIDHKLLSAMIEKFAGGPVGLETLAAVIGEEAQTIEEVYEPYLMQIGLLQRTPRGRVVTP 320 Query: 322 IAWQHLGIDIPHR 334 A+ H +++P R Sbjct: 321 AAYTHFEMEVPKR 333 >gi|331002345|ref|ZP_08325863.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae oral taxon 107 str. F0167] gi|330410161|gb|EGG89595.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae oral taxon 107 str. F0167] Length = 332 Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 170/326 (52%), Positives = 234/326 (71%), Gaps = 1/326 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S +++ED I LRP+ L E+ GQ + +NLK++I+AAK R E+LDHVLF GPPGL Sbjct: 5 IISTEITKEDKQIEKSLRPQFLHEYIGQEKIRNNLKIYIDAAKLRRESLDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL ++A E+G N + TSGP I K GD+AA+L NL + DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLCNIIANEMGTNLKVTSGPAIEKPGDMAAILNNLNEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF +D+++G+ ARS++++L +FTL+ ATTR GLLT PL+DRFG+ +L FY Sbjct: 125 YPAMEDFAIDIVIGKDAGARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVQKLEFYNT 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++LK IV+R + + G+ + D A EIA RSRGTPR+A RLL+RVRDFA+V + I +++ Sbjct: 185 DELKEIVKRSSIVLGVEIDDSGAVEIARRSRGTPRLANRLLKRVRDFAQVKYNGIIDKKV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AD AL L +DK+G D D L I FGGGPVG+ T+SA + E +ED+ EPY++ Sbjct: 245 ADYALDTLDVDKLGLDNNDRIILLTIIEKFGGGPVGLNTLSAAIGEDAGTLEDVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331 G I RTP GR+ A+ HLGI++ Sbjct: 305 MNGLINRTPGGRVATENAYIHLGIEM 330 >gi|302389937|ref|YP_003825758.1| Holliday junction DNA helicase subunit RuvB [Thermosediminibacter oceani DSM 16646] gi|302200565|gb|ADL08135.1| Holliday junction DNA helicase subunit RuvB [Thermosediminibacter oceani DSM 16646] Length = 338 Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 174/309 (56%), Positives = 227/309 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + +++ GQ + +LK+F++AA R E LDHVL GPPGLGKTTLA ++ARELGVN Sbjct: 22 LRPVSFDDYIGQDQVKESLKIFVKAALKRGEPLDHVLLYGPPGLGKTTLAYIIARELGVN 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I + GDLAA+LTNL +RD+LFIDEIHRL VEEILYPAMEDF LD+M+G+G Sbjct: 82 IKITSGPAIERPGDLAAVLTNLGERDLLFIDEIHRLHPAVEEILYPAMEDFALDIMIGKG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARS+++NL FTL+ ATTR G LT+PL+DRFGI L+FY+ EDL I+ R A++ + Sbjct: 142 PGARSIRLNLRPFTLVGATTRAGALTSPLRDRFGIRCHLDFYKKEDLVRILLRSARILNI 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA IA SRGTPRIA RLL+R+RD+A+V IT E+A L L +D G D Sbjct: 202 VLDEKAAERIAACSRGTPRIANRLLKRIRDYAQVKAEGVITEEVAVEGLKLLKVDSCGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q D R L I FGGGPVGI++++A L+E IED+ EPY+IQ+G+I RT RGR+ Sbjct: 262 QDDRRLLETIIEKFGGGPVGIDSLAAALNEEASTIEDIYEPYLIQEGYILRTARGRIASD 321 Query: 322 IAWQHLGID 330 A++HLGI+ Sbjct: 322 KAYEHLGIE 330 >gi|322437278|ref|YP_004219490.1| Holliday junction DNA helicase RuvB [Acidobacterium sp. MP5ACTX9] gi|321165005|gb|ADW70710.1| Holliday junction DNA helicase RuvB [Acidobacterium sp. MP5ACTX9] Length = 339 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 167/313 (53%), Positives = 235/313 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L EF GQ +A L + +EAAK+R EALDHVL GPPGLGKTTLA ++A E+GV Sbjct: 22 LRPTRLAEFIGQSKAKEQLAIALEAAKSRGEALDHVLLFGPPGLGKTTLATIIANEMGVG 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGP + GDL A+L+N++D+ VLF+DE+HRL +++E LY A+ED+ LD+M+G G Sbjct: 82 FQQTSGPALMIQGDLTAILSNIKDKQVLFLDEVHRLQPVLQEKLYTALEDYSLDIMIGSG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+ +++ FT +AATTR GLL++P++ RFGI +RL FY ++L+ IV+R A++ G+ Sbjct: 142 PAARTFVLDIKPFTFVAATTRPGLLSSPMRARFGILLRLEFYTDDELRFIVERSAEVLGV 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIAMRSRGTPRIA RLLRRVRD+A+V A I RE A+AAL L +D GFD Sbjct: 202 PIDRDGAAEIAMRSRGTPRIANRLLRRVRDYAQVRAAGVIDRETANAALEMLEVDAHGFD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD R L I + GGPVG+ T++A L+E +DA+E++ EP++IQ GF+ RTPRGR+ Sbjct: 262 ELDRRLLRTIIEKYDGGPVGLNTLAAALAEEQDALEEVYEPFLIQIGFLDRTPRGRVATR 321 Query: 322 IAWQHLGIDIPHR 334 +A++HLG+++P + Sbjct: 322 LAYEHLGLEMPRK 334 >gi|116872961|ref|YP_849742.1| Holliday junction DNA helicase B [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463789|sp|A0AIY1|RUVB_LISW6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116741839|emb|CAK20963.1| holliday junction DNA helicase RuvB [Listeria welshimeri serovar 6b str. SLCC5334] Length = 335 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 182/329 (55%), Positives = 232/329 (70%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + S V E+ + LRP+TL ++ GQ + +NL VFIEAA R EALDHVL Sbjct: 1 MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+G ++TSGP I + GDLA +LT+LE DVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+ LD+++G GP+ARSV+++L FTLI ATTR GLL+ PL+DRFG+ L Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E L IV R A + + D A EIA RSRGTPRIA RLL+RVRDFA+V T Sbjct: 181 EFYTEEQLTEIVLRTAGILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +D G D +D + L I ++F GGPVG++TI+A + E R+ IED+ Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QRTPRGR+ A+ HLGI Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329 >gi|221194838|ref|ZP_03567895.1| holliday junction DNA helicase RuvB [Atopobium rimae ATCC 49626] gi|221185742|gb|EEE18132.1| holliday junction DNA helicase RuvB [Atopobium rimae ATCC 49626] Length = 357 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 171/313 (54%), Positives = 231/313 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+E+ GQ NL+V I+AAK R E LDHV+F GPPGLGKTTLA V+A E+ Sbjct: 44 LRPKTLDEYLGQSRVKENLRVLIQAAKKRDEPLDHVIFSGPPGLGKTTLAGVLAGEMNSK 103 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +TSGP I + GDLAA+LTNLE+ D+LFIDEIHRL+ VEE+LYPAMEDF LD+++G+G Sbjct: 104 LHTTSGPAIERTGDLAAILTNLEEGDILFIDEIHRLNHQVEEVLYPAMEDFFLDIVIGKG 163 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+++++ RFTL+AATTR GLLT PL+DRFGI RL++Y +E+LKTIV R A + + Sbjct: 164 PAARSIRLDIPRFTLVAATTRTGLLTGPLRDRFGIAYRLDYYSVEELKTIVLRSATILDV 223 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ ++ A EIA RSRGTPR+A RLL+RVRD+A+V IT EIA AL ID++G D Sbjct: 224 SIDEQGALEIASRSRGTPRLANRLLKRVRDYAQVKAGGMITWEIAAQALSFFDIDELGLD 283 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D+ L + + F G PVG+ T+++ +SE +ED+ EP+++QQG I RTP+GR Sbjct: 284 AMDVSVLRALCQTFHGRPVGLTTLASAVSEDPSTLEDVYEPFLLQQGLIIRTPQGRQATQ 343 Query: 322 IAWQHLGIDIPHR 334 A+ HL I P + Sbjct: 344 SAFNHLSIPFPSQ 356 >gi|303237792|ref|ZP_07324350.1| Holliday junction DNA helicase RuvB [Prevotella disiens FB035-09AN] gi|302482017|gb|EFL45054.1| Holliday junction DNA helicase RuvB [Prevotella disiens FB035-09AN] Length = 350 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 175/320 (54%), Positives = 229/320 (71%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 VS E + LRP ++F+GQ + NL+VF+EAAK R E LDH L GPPGLGKTTL+ Sbjct: 22 VSAEKEFENALRPPKFDDFSGQDKVVENLRVFVEAAKYRGEPLDHTLLHGPPGLGKTTLS 81 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED Sbjct: 82 NIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMED 141 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y E L I Sbjct: 142 YRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYAPETLSKI 201 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R A L + + ++AA EIA RSRGTPRI LLRRVRDFA+V TI IA ++L Sbjct: 202 IKRSANLLKVPIYEDAAVEIARRSRGTPRICNSLLRRVRDFAQVKGNGTIDHAIAQSSLQ 261 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L IDK G D++D + L I F GGPVGI TI+ + E +E++ EPY+I +GFI+ Sbjct: 262 ALNIDKYGLDEIDNKILLTIIDKFRGGPVGISTIATAIGEDGGTVEEVYEPYLIMEGFIK 321 Query: 312 RTPRGRLLMPIAWQHLGIDI 331 RTPRGR+ +A++HLG +I Sbjct: 322 RTPRGRMATALAYEHLGKNI 341 >gi|302035799|ref|YP_003796121.1| holliday junction ATP-dependent DNA helicase RuvB [Candidatus Nitrospira defluvii] gi|300603863|emb|CBK40195.1| Holliday junction ATP-dependent DNA helicase RuvB [Candidatus Nitrospira defluvii] Length = 345 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 168/306 (54%), Positives = 226/306 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L+E+ GQ +L++ IEAAK R EALDH +F GPPGLGKTT+A ++ARE+G Sbjct: 21 LRPQSLQEYVGQSRMKDSLEICIEAAKRRGEALDHAIFYGPPGLGKTTIAHIIAREMGSA 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 RSTSG V++ AGDLAA+LTNL++RDVLFIDEIHRL VEE LYPAMED+QLDL+VG+G Sbjct: 81 IRSTSGLVLSHAGDLAAILTNLQERDVLFIDEIHRLPASVEEALYPAMEDYQLDLVVGQG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 S R+VK+ L RFTL+ ATTR G LT+PL+DRFG+ RL FY ++L +IV R A L + Sbjct: 141 ASTRTVKLELPRFTLVGATTRAGALTSPLRDRFGLVHRLEFYSPQELTSIVTRSAGLLNI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRI RL++R+RD+AE+ ITR++A AL+ LA+D G D Sbjct: 201 PIDEAGAAEIARRARGTPRIVNRLIKRIRDYAEIKAGGRITRQVAQDALVWLAVDAAGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L + F GGPVG+++++A + E R +ED+ EPY+IQ GF++RT RGR Sbjct: 261 EMDRRILLTVMEKFNGGPVGVDSLAAAVQEDRGTLEDVYEPYLIQAGFLERTGRGRQATR 320 Query: 322 IAWQHL 327 +A+ H Sbjct: 321 LAFDHF 326 >gi|217964321|ref|YP_002349999.1| holliday junction DNA helicase RuvB [Listeria monocytogenes HCC23] gi|255023715|ref|ZP_05295701.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL J1-208] gi|254767430|sp|B8DHL6|RUVB_LISMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|217333591|gb|ACK39385.1| holliday junction DNA helicase RuvB [Listeria monocytogenes HCC23] gi|307571113|emb|CAR84292.1| holliday junction DNA helicase [Listeria monocytogenes L99] Length = 335 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 181/329 (55%), Positives = 232/329 (70%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + S V E+ + LRP+TL ++ GQ + +NL VFIEAA R EALDHVL Sbjct: 1 MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+G ++TSGP I + GDLA +LT+LE DVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+ LD+++G GP+ARSV+++L FTLI ATTR GLL+ PL+DRFG+ L Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E L IV R + + + D A EIA RSRGTPRIA RLL+RVRDFA+V T Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +D G D +D + L I ++F GGPVG++TI+A + E R+ IED+ Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QRTPRGR+ A+ HLGI Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329 >gi|295102070|emb|CBK99615.1| Holliday junction DNA helicase, RuvB subunit [Faecalibacterium prausnitzii L2-6] Length = 351 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 170/327 (51%), Positives = 233/327 (71%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 ++ ++ D++ + LRP+ LE++ GQ + NLK+++EAAK R E +DH+L GPPGLG Sbjct: 12 MMQPGMTAADSEENNLRPQHLEDYIGQEKVKQNLKIYLEAAKRRGEPMDHILLYGPPGLG 71 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A E+GV R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS VEE+LY Sbjct: 72 KTTLAGIIANEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLY 131 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PA+ED+ LD+M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L Y + Sbjct: 132 PALEDYALDIMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPD 191 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L I+ R A + +T E A E+A SRGTPR+A R L+RVRDFA V I R++A Sbjct: 192 ELSNIIIRSAGILDQPITPEGAYELAKCSRGTPRVANRFLKRVRDFATVLGDGVIDRDVA 251 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 +L R+ +D +G D+LD L I + GGPVG+ET++A L E +EDL EPY++Q Sbjct: 252 LLSLKRMDVDALGLDELDRSLLRAIIEMYNGGPVGLETLAAALGEEAVTLEDLCEPYLMQ 311 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 GF+ RTPRGR +A++HLG+ P Sbjct: 312 MGFLTRTPRGRCATRLAYEHLGLKAPE 338 >gi|251780556|ref|ZP_04823476.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084871|gb|EES50761.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 344 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 173/315 (54%), Positives = 232/315 (73%), Gaps = 1/315 (0%) Query: 15 EDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ED + L LRP+ + E+ GQ + L +FI+AAK R EALDHVL GPPGLGKTTLA + Sbjct: 12 EDGNSELSLRPQKINEYIGQDKVKERLNIFIKAAKNRKEALDHVLLYGPPGLGKTTLANI 71 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A+E+ + + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+ VEEILYPAMED+ Sbjct: 72 IAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEIHRLNRSVEEILYPAMEDYA 131 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G+G +A+S++++L +FTLI ATTR+G+LT+PL+DRFG+ + +Y+ LK IV Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDRFGVLCAMEYYDENQLKEIVI 191 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + G +T+E A EIA RSRGTPRIA RLL+RVRD++EV K I+ + A AL L Sbjct: 192 RSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYSEVKSNKVISLKEAREALELL 251 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD++D + L I NF GGPVGIET+S + E +ED+ EPY++Q+GFI RT Sbjct: 252 EVDNQGFDKVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTVEDVYEPYLLQKGFIVRT 311 Query: 314 PRGRLLMPIAWQHLG 328 PRGR+ A++HLG Sbjct: 312 PRGRIASDKAYKHLG 326 >gi|196233359|ref|ZP_03132203.1| Holliday junction DNA helicase RuvB [Chthoniobacter flavus Ellin428] gi|196222499|gb|EDY17025.1| Holliday junction DNA helicase RuvB [Chthoniobacter flavus Ellin428] Length = 339 Score = 352 bits (903), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 171/317 (53%), Positives = 228/317 (71%), Gaps = 1/317 (0%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 DISL RP EF GQ + C L++ ++AA+ R + L+H+L GPPGLGKTTLA ++A Sbjct: 18 DISL-RPPMFSEFAGQDKVCQRLELMVQAAQQRGDVLEHILLSGPPGLGKTTLAYILAHA 76 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +GVN ++TSGP I KAGDLA LLT LE DVLFIDEIHRL +EE LYPAMED++LD++ Sbjct: 77 MGVNIKNTSGPTIEKAGDLAGLLTTLERGDVLFIDEIHRLQPAIEEYLYPAMEDYKLDII 136 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 + +GP+ARS+ +NL RFTLI ATTR G+L+ PL+ RFG+ RL++Y E+L+ IV R A Sbjct: 137 IDQGPNARSIPLNLPRFTLIGATTRAGMLSAPLRTRFGMTCRLDYYTAEELQKIVLRSAG 196 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 L GL + D A EIA RSRGTPRIA LLR VRDFA+V +TR++AD AL L ID+ Sbjct: 197 LIGLDIDDPGALEIAARSRGTPRIANNLLRWVRDFAQVRAGNRVTRDVADKALEMLDIDR 256 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 GFD++D R L + F GGPVGI +++ + + +ED+ EPY+I QG+I+RTP+GR Sbjct: 257 DGFDEMDKRILEALVHKFNGGPVGINSLAVAIGDDPGTLEDVHEPYLIMQGYIKRTPQGR 316 Query: 318 LLMPIAWQHLGIDIPHR 334 + +P+ ++ LGI P R Sbjct: 317 VALPLCYRKLGISAPRR 333 >gi|194468326|ref|ZP_03074312.1| Holliday junction DNA helicase RuvB [Lactobacillus reuteri 100-23] gi|194453179|gb|EDX42077.1| Holliday junction DNA helicase RuvB [Lactobacillus reuteri 100-23] Length = 338 Score = 352 bits (903), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 172/334 (51%), Positives = 241/334 (72%), Gaps = 2/334 (0%) Query: 1 MMDREGLLSRNVS-QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M + G+LS + S +E++ + + LRP+ L+E+ GQ + L+V+I+AA++R EALDHVL Sbjct: 1 MENDHGILSDHPSGEEESQVEITLRPQKLKEYIGQPKIKHELEVYIKAAQSREEALDHVL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA V+A E+GVN ++TSGP I K GDL ALL L+ DVLF+DEIHRL Sbjct: 61 LYGPPGLGKTTLAMVIANEMGVNIKTTSGPAIEKPGDLVALLNELKPGDVLFVDEIHRLP 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEE+LY AMED+ +D+++GEGP+A V L FTLI ATTR G+L+ PL+DRFGI Sbjct: 121 KVVEEMLYSAMEDYYIDIVIGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 +N+Y ++L I+ R AK+ ++ +E A E+++RSRGTPRIA RLL+RVRDFA+VA Sbjct: 181 HMNYYTQDELTKIIFRSAKIFHTSIQNEGAHELSLRSRGTPRIANRLLKRVRDFAQVAGK 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 ++I I AL L +D G D++D + L + + GGPVG++TI+A + E + IE+ Sbjct: 241 RSIDSAIVKQALSLLQVDDRGLDEIDRKMLLTMINFYHGGPVGLKTIAANIGEETNTIEE 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 + EPY++Q GFI RTPRGRL+ P A++HLGI+ P Sbjct: 301 MYEPYLLQIGFISRTPRGRLVTPTAYEHLGIEYP 334 >gi|262197091|ref|YP_003268300.1| Holliday junction DNA helicase RuvB [Haliangium ochraceum DSM 14365] gi|262080438|gb|ACY16407.1| Holliday junction DNA helicase RuvB [Haliangium ochraceum DSM 14365] Length = 376 Score = 352 bits (903), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 172/313 (54%), Positives = 226/313 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ +++ GQ + +NL+V + AAK ALDH LF GPPGLGKTTLA V+A ELGV Sbjct: 54 LRPQRFDDYVGQPDIIANLRVSVSAAKQNGWALDHFLFAGPPGLGKTTLAHVIANELGVG 113 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGP I G LA+LLT L + DVLFIDEIHRL+ +VEE LYPAMEDF+ DL +G+G Sbjct: 114 VHVTSGPAIDHKGMLASLLTALGEGDVLFIDEIHRLNPVVEENLYPAMEDFKFDLFIGDG 173 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A++V +NL RFTL+ ATTR+GLL++PL DRFG +L +Y++ ++ IV R A++ G+ Sbjct: 174 PHAKAVTMNLPRFTLLGATTRMGLLSSPLLDRFGFHWQLGYYDLSEMAAIVARSAQVLGV 233 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D A EIA RSRGTPRIA RLLRRVRDFA V + I ++A AAL RL++D G D Sbjct: 234 GMEDGGALEIARRSRGTPRIANRLLRRVRDFATVESSGVIGGKLAAAALDRLSVDHAGLD 293 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD YLT++ F GGPVG++ I+A +SE R +ED++EP+++Q GFI RTPRGR+ Sbjct: 294 ALDRAYLTVVVERFDGGPVGVDAIAASMSEERGTLEDVVEPFLLQAGFITRTPRGRMATA 353 Query: 322 IAWQHLGIDIPHR 334 A++HLG+ P R Sbjct: 354 AAFRHLGVRAPGR 366 >gi|302872057|ref|YP_003840693.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor obsidiansis OB47] gi|302574916|gb|ADL42707.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor obsidiansis OB47] Length = 338 Score = 352 bits (902), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 169/323 (52%), Positives = 227/323 (70%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E LL S ED LRP+TLE++ GQ + +K+FIEAAK R E LDHVL GPPG Sbjct: 2 ERLLDNKFSVEDVHEETLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+ +EE+ Sbjct: 62 LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED ++D+++G+GPSA+++++ L FTLI ATTR GLL++PL+DRFGI RL++Y Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+L IV R A + + EA EIA RSRGTPR+A RLLRR+RD+A V H +IT E Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYATVKHTGSITYE 241 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A L +D+ G D +D L I FGGGPVG+ TI+A + E IED+ EPY+ Sbjct: 242 VAKNGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301 Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327 IQ+GF+ +T RGR+ A H+ Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324 >gi|312793295|ref|YP_004026218.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180435|gb|ADQ40605.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor kristjanssonii 177R1B] Length = 338 Score = 352 bits (902), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 169/323 (52%), Positives = 228/323 (70%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E LL S ED LRP+TLE++ GQ + +K+FIEAAK R E LDHVL GPPG Sbjct: 2 ERLLDNKFSVEDVHEESLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+ +EE+ Sbjct: 62 LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED ++D+++G+GPSA+++++ L FTLI ATTR GLL++PL+DRFGI RL++Y Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+L IV R A + + EA EIA RSRGTPR+A RLLRR+RD+A V H +IT E Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A + L +D+ G D +D L I FGGGPVG+ TI+A + E IED+ EPY+ Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301 Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327 IQ+GF+ +T RGR+ A H+ Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324 >gi|146296578|ref|YP_001180349.1| Holliday junction DNA helicase B [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166231474|sp|A4XJS3|RUVB_CALS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|145410154|gb|ABP67158.1| Holliday junction DNA helicase subunit RuvB [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 338 Score = 352 bits (902), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 169/323 (52%), Positives = 228/323 (70%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E LL S ED LRP+TLE++ GQ + +K+FIEAAK R E LDHVL GPPG Sbjct: 2 ERLLDNKFSIEDVHEESLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+ +EE+ Sbjct: 62 LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED ++D+++G+GPSA+++++ L FTLI ATTR GLL++PL+DRFGI RL++Y Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+L IV R A + + EA EIA RSRGTPR+A RLLRR+RD+A V H +IT E Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A + L +D+ G D +D L I FGGGPVG+ TI+A + E IED+ EPY+ Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301 Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327 IQ+GF+ +T RGR+ A H+ Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324 >gi|325290231|ref|YP_004266412.1| Holliday junction DNA helicase subunit RuvB [Syntrophobotulus glycolicus DSM 8271] gi|324965632|gb|ADY56411.1| Holliday junction DNA helicase subunit RuvB [Syntrophobotulus glycolicus DSM 8271] Length = 333 Score = 352 bits (902), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 176/318 (55%), Positives = 230/318 (72%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 + D + LRP E+ GQ + NLK+FIEAA R E+LDHVL GPPGLGKTTLA + Sbjct: 12 EADRGMEELRPSRFREYIGQSKVKENLKIFIEAALKRGESLDHVLLYGPPGLGKTTLAHI 71 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+GVN R+TSGP I + GDLAALLT+LE RDVLFIDEIHRLS EE+LY AMED Sbjct: 72 IASEMGVNIRTTSGPAIERPGDLAALLTSLEPRDVLFIDEIHRLSRTSEEVLYSAMEDSC 131 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G+GP ARS+++ L+ FTLI ATTR G LT+PL+DRFG+ RL FY E+L IV Sbjct: 132 LDIVIGKGPGARSMRLALTPFTLIGATTRAGQLTSPLRDRFGVINRLEFYTQEELVEIVT 191 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + + +TDE A EIA RSRGTPRIA RLL+RVRD+A+V I +A AL L Sbjct: 192 RTAVILDVGLTDEGAEEIAKRSRGTPRIANRLLKRVRDYAQVWENGGIDLALASQALNLL 251 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +G D +D + L I +F GGPVG++T++A + E + IED++EP+++Q+GFIQRT Sbjct: 252 EVDHLGLDNIDKKVLQTIVTSFNGGPVGLDTLAATVGEEAETIEDVVEPFLLQKGFIQRT 311 Query: 314 PRGRLLMPIAWQHLGIDI 331 PRGR + +A +HLG+ + Sbjct: 312 PRGRTVTDLALRHLGLSL 329 >gi|312127828|ref|YP_003992702.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor hydrothermalis 108] gi|311777847|gb|ADQ07333.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor hydrothermalis 108] Length = 338 Score = 352 bits (902), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 169/323 (52%), Positives = 228/323 (70%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E LL S ED LRP+TLE++ GQ + +K+FIEAAK R E LDHVL GPPG Sbjct: 2 ERLLDNKFSIEDVHEESLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+ +EE+ Sbjct: 62 LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED ++D+++G+GPSA+++++ L FTLI ATTR GLL++PL+DRFGI RL++Y Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+L IV R A + + EA EIA RSRGTPR+A RLLRR+RD+A V H +IT E Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A + L +D+ G D +D L I FGGGPVG+ TI+A + E IED+ EPY+ Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301 Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327 IQ+GF+ +T RGR+ A H+ Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324 >gi|28211816|ref|NP_782760.1| Holliday junction DNA helicase RuvB [Clostridium tetani E88] gi|44888476|sp|Q891Z8|RUVB_CLOTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|28204258|gb|AAO36697.1| holliday junction DNA helicase ruvB [Clostridium tetani E88] Length = 345 Score = 352 bits (902), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 173/319 (54%), Positives = 230/319 (72%), Gaps = 1/319 (0%) Query: 14 QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +ED DI LRP LEE+ GQ + L++FI+AAK R E+LDHVL GPPGLGKTTLA Sbjct: 15 EEDIDIEYNLRPTQLEEYIGQSKVREKLRIFIKAAKNRGESLDHVLLYGPPGLGKTTLAN 74 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+E+ N + TSGP I +AGDLAA+LT L + DVLFIDEIHRL+ VEEILYPAMED+ Sbjct: 75 IIAKEMKGNLKITSGPAIERAGDLAAILTTLNEHDVLFIDEIHRLNRAVEEILYPAMEDY 134 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 LD+++G+G +A+S++++L FTLI ATTRVGLLT PL+DRFG+ + FY E+LK I+ Sbjct: 135 ALDIVIGKGAAAKSIRLDLPHFTLIGATTRVGLLTAPLRDRFGVLCPMEFYNEEELKDII 194 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R +K+ + +EAA E+A RSRGTPRIA R+L+RVRD++EV I + + AL Sbjct: 195 VRSSKILNVKTEEEAAYELARRSRGTPRIANRILKRVRDYSEVMGDGIIDLNMTNKALNL 254 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L IDK GFD +D + L I NF GGPVG+ET++ + E D IED+ EPY++Q+GFI R Sbjct: 255 LEIDKEGFDSIDTKILKAILDNFNGGPVGLETLAYFIGEELDTIEDVYEPYLLQKGFIMR 314 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ ++H +I Sbjct: 315 TPRGRVATEKTYKHFKREI 333 >gi|16803572|ref|NP_465057.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes EGD-e] gi|47097029|ref|ZP_00234602.1| holliday junction DNA helicase RuvB [Listeria monocytogenes str. 1/2a F6854] gi|224499807|ref|ZP_03668156.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes Finland 1988] gi|224501528|ref|ZP_03669835.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL R2-561] gi|254829709|ref|ZP_05234364.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes 10403S] gi|254898302|ref|ZP_05258226.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes J0161] gi|254912206|ref|ZP_05262218.1| holliday junction ATP-dependent DNA helicase ruvB [Listeria monocytogenes J2818] gi|254936534|ref|ZP_05268231.1| ruvB [Listeria monocytogenes F6900] gi|255027599|ref|ZP_05299585.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL J2-003] gi|255030239|ref|ZP_05302190.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes LO28] gi|284801922|ref|YP_003413787.1| Holliday junction DNA helicase B [Listeria monocytogenes 08-5578] gi|284995064|ref|YP_003416832.1| Holliday junction DNA helicase B [Listeria monocytogenes 08-5923] gi|20140052|sp|Q8Y6Z8|RUVB_LISMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|16410961|emb|CAC99610.1| ruvB [Listeria monocytogenes EGD-e] gi|47014611|gb|EAL05571.1| holliday junction DNA helicase RuvB [Listeria monocytogenes str. 1/2a F6854] gi|258609128|gb|EEW21736.1| ruvB [Listeria monocytogenes F6900] gi|284057484|gb|ADB68425.1| Holliday junction DNA helicase B [Listeria monocytogenes 08-5578] gi|284060531|gb|ADB71470.1| Holliday junction DNA helicase B [Listeria monocytogenes 08-5923] gi|293590179|gb|EFF98513.1| holliday junction ATP-dependent DNA helicase ruvB [Listeria monocytogenes J2818] Length = 335 Score = 352 bits (902), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 180/329 (54%), Positives = 232/329 (70%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + S V E+ + LRP+ L ++ GQ + +NL VFIEAA R EALDHVL Sbjct: 1 MDERIISSETVDAEEVSFETSLRPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+G ++TSGP I + GDLA +LT+LE DVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+ LD+++G GP+ARSV+++L FTLI ATTR GLL+ PL+DRFG+ L Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E L IV R + + + D A EIA RSRGTPRIA RLL+RVRDFA+V T Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +D G D +D + L I ++F GGPVG++TI+A + E R+ IED+ Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QRTPRGR++ A+ HLGI Sbjct: 301 EPYLLQIGFLQRTPRGRIVTETAYNHLGI 329 >gi|312622644|ref|YP_004024257.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor kronotskyensis 2002] gi|312203111|gb|ADQ46438.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor kronotskyensis 2002] Length = 338 Score = 351 bits (901), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 169/323 (52%), Positives = 227/323 (70%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E LL S ED LRP+ LEE+ GQ + +K+FIEAAK R E LDHVL GPPG Sbjct: 2 ERLLDNKFSVEDVHEESLRPKMLEEYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+ +EE+ Sbjct: 62 LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED ++D+++G+GPSA+++++ L FTLI ATTR GLL++PL+DRFGI RL++Y Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E+L IV R A + + EA EIA RSRGTPR+A RLLRR+RD+A V H +IT E Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A + L +D+ G D +D L I FGGGPVG+ TI+A + E IED+ EPY+ Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301 Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327 IQ+GF+ +T RGR+ A H+ Sbjct: 302 IQEGFLVKTARGRVATQKAISHI 324 >gi|51892299|ref|YP_074990.1| Holliday junction DNA helicase RuvB [Symbiobacterium thermophilum IAM 14863] gi|68715427|sp|Q67Q97|RUVB_SYMTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|51855988|dbj|BAD40146.1| Holliday junction DNA helicase RuvB [Symbiobacterium thermophilum IAM 14863] Length = 347 Score = 351 bits (901), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 175/329 (53%), Positives = 236/329 (71%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M E +S + EDA I LRP+ L ++ GQ L ++I AAK R E LDHVL Sbjct: 1 MSEERFVSGHRRPEDARIEETLRPQRLADYPGQERVKEQLSIYIAAAKKRGEPLDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+GVN R TSGP I+ GDLAA+LT L + DVLF+DEIHRL+ + Sbjct: 61 GPPGLGKTTLAHIIAHEMGVNLRITSGPAISHQGDLAAILTQLSEGDVLFVDEIHRLNRL 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE LYPAMEDF LD+++G+GP+AR+++++L RFTLI ATTR G LT+PL+DRFG+ ++L Sbjct: 121 VEETLYPAMEDFALDIILGKGPAARTLRLDLPRFTLIGATTRYGALTSPLRDRFGVVLQL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E+L I+ R A++ + + A EIA RSRGTPR+A RLLRR+RD+A+V Sbjct: 181 QFYSEEELTRILMRAARILNVPLDPGGAREIARRSRGTPRVANRLLRRLRDYAQVRADGV 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ITR++ADA L + +D MG D +D + L I ++GGGPVG++TI+A SE + IED+ Sbjct: 241 ITRDVADAGLRMMGVDAMGLDTVDHKVLLTIIHHYGGGPVGLDTIAAATSEEPETIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QRTPRGR+ A+++L I Sbjct: 301 EPYLMQIGFLQRTPRGRVATRAAYEYLNI 329 >gi|229543703|ref|ZP_04432763.1| Holliday junction DNA helicase RuvB [Bacillus coagulans 36D1] gi|229328123|gb|EEN93798.1| Holliday junction DNA helicase RuvB [Bacillus coagulans 36D1] Length = 332 Score = 351 bits (901), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 179/333 (53%), Positives = 234/333 (70%), Gaps = 3/333 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++S ++++ + LRP+TL ++ GQ E NL VFIEAAK R E LDHVL Sbjct: 1 MEDR--VVSGEANEQEVSFEMSLRPQTLAQYIGQDEVKHNLAVFIEAAKGRRETLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA V+A E+G N R+TSGP I + GDLA++LT LE +VLFIDEIHRL Sbjct: 59 YGPPGLGKTTLATVIANEMGANIRTTSGPAIERPGDLASVLTALEPGEVLFIDEIHRLPK 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LYPAMEDF LD+++G+G ARS++++L FTLI ATTR G ++ PL+DRFG+ R Sbjct: 119 AIEEVLYPAMEDFCLDIVIGKGSGARSIRLDLPPFTLIGATTRAGSVSAPLRDRFGVISR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y L IV R A + A+ E A EIA RSRGTPRIA RLLRRVRDFA+V Sbjct: 179 LEYYNEAQLAEIVLRTAGILETAIEPEGAAEIARRSRGTPRIANRLLRRVRDFAQVKGDG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 +T EIA+ AL L +DK G D +D + L I F GGPVG++TI+A + E R+ IED+ Sbjct: 239 KVTLEIANYALELLQVDKRGLDHIDHKLLKAIIERFRGGPVGLDTIAASIGEERETIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q GF+QRTPRGR+ P+ + H +++P Sbjct: 299 YEPYLLQIGFLQRTPRGRVATPLCYAHFHMEVP 331 >gi|16800635|ref|NP_470903.1| Holliday junction DNA helicase RuvB [Listeria innocua Clip11262] gi|20140101|sp|Q92BI2|RUVB_LISIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|16414054|emb|CAC96798.1| ruvB [Listeria innocua Clip11262] gi|313618793|gb|EFR90689.1| holliday junction DNA helicase RuvB [Listeria innocua FSL S4-378] Length = 335 Score = 351 bits (901), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 181/329 (55%), Positives = 232/329 (70%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + S V E+ + LRP+TL ++ GQ + +NL VFIEAA R EALDHVL Sbjct: 1 MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+G ++TSGP I + GDLA +LT+LE DVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAMVIASEMGSEIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+ LD+++G GP+ARSV+++L FTLI ATTR GLL+ PL+DRFG+ L Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E L IV R + + + D A EIA RSRGTPRIA RLL+RVRDFA+V T Sbjct: 181 EFYTEEQLTEIVLRTSGILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +D G D +D + L I ++F GGPVG++TI+A + E R+ IED+ Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QRTPRGR+ A+ HLGI Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329 >gi|283796453|ref|ZP_06345606.1| holliday junction DNA helicase RuvB [Clostridium sp. M62/1] gi|291075861|gb|EFE13225.1| holliday junction DNA helicase RuvB [Clostridium sp. M62/1] Length = 340 Score = 351 bits (901), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 172/324 (53%), Positives = 234/324 (72%), Gaps = 1/324 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ +V++ED I + LRP+ L E+ GQ S LK+FI+AAK+R E LDHVLF GPPGL Sbjct: 14 IITTDVTEEDKKIETSLRPQLLSEYIGQERIKSTLKIFIDAAKSRKEPLDHVLFYGPPGL 73 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL ++A E+GVN + TSGP I K G++AA+L L + DVLF+DEIHRL+ VEE+L Sbjct: 74 GKTTLCGIIANEMGVNMKVTSGPAIEKPGEIAAILNGLSEGDVLFVDEIHRLNRQVEEVL 133 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+M+G+ SARS+++ L +FTL+ ATTR GLLT PL+DRFGI +++FY Sbjct: 134 YPAMEDYAIDIMLGKDSSARSIRLELPKFTLVGATTRAGLLTAPLRDRFGIIQKMDFYTP 193 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +LKTIV R A + + + +E A EIA RSRGTPR+A RLL+RVRDFA+V + IT+ + Sbjct: 194 AELKTIVMRSADVMQVKIEEEGAFEIARRSRGTPRLANRLLKRVRDFAQVKYDGVITKAV 253 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AD AL L +DK+G D D L + + F GGPVG+ET++A L E +ED+ EPY++ Sbjct: 254 ADFALDILDVDKLGLDNNDRAILNAMIQKFSGGPVGLETLAACLGEDAGTLEDVYEPYLL 313 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 G I RTPRGR+ A+ HLG+ Sbjct: 314 MNGLINRTPRGRVATEAAYHHLGL 337 >gi|308234390|ref|ZP_07665127.1| Holliday junction DNA helicase RuvB [Atopobium vaginae DSM 15829] gi|328944206|ref|ZP_08241670.1| crossover junction ATP-dependent DNA helicase RuvB [Atopobium vaginae DSM 15829] gi|327491125|gb|EGF22900.1| crossover junction ATP-dependent DNA helicase RuvB [Atopobium vaginae DSM 15829] Length = 368 Score = 351 bits (901), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 167/322 (51%), Positives = 236/322 (73%), Gaps = 1/322 (0%) Query: 12 VSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 ++++D D+ LRP +L ++ GQ NL+V I AAK R E LDHVLF GPPGLGKTTL Sbjct: 45 LTEDDLDVERSLRPESLGDYCGQTRVRENLRVLISAAKDRGETLDHVLFSGPPGLGKTTL 104 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A +VA E+G + ++TSGP IA+ GDLAA+LTNL++ DVLF+DEIHRL+ VEE+LYPAME Sbjct: 105 ASIVAHEMGAHLKTTSGPAIARTGDLAAILTNLQEGDVLFVDEIHRLNHQVEEVLYPAME 164 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF LD+++G+GP+ARS+++++ FTLI ATTR GLLT PL+DRFGI RL++Y +++L Sbjct: 165 DFFLDIVIGKGPAARSIRLDVPHFTLIGATTRTGLLTGPLRDRFGISYRLDYYSVDELAE 224 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV+R A + + + D A EIA RSRGTPR+A RLL+RVRD+A+V I+ ++A AL Sbjct: 225 IVKRSAGILEVGIDDSGAQEIASRSRGTPRLANRLLKRVRDYAQVKAHGEISWDVASQAL 284 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 ID+MG D +D + L+++ + FGG VG+ TI++ + E +ED+ EPY++Q+G + Sbjct: 285 SFFEIDEMGLDWMDKKILSVLTQTFGGRAVGLTTIASAVGEDPATLEDVYEPYLLQRGLL 344 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 RTP+GR +A+ HLG+ P Sbjct: 345 IRTPQGRQATSLAFTHLGLHAP 366 >gi|282858660|ref|ZP_06267818.1| Holliday junction DNA helicase RuvB [Prevotella bivia JCVIHMP010] gi|282588578|gb|EFB93725.1| Holliday junction DNA helicase RuvB [Prevotella bivia JCVIHMP010] Length = 345 Score = 351 bits (901), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 170/307 (55%), Positives = 224/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP ++F+GQ + NL VF+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLKFDDFSGQAKVVENLNVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ ++ I++R A L + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINMHLEYYDTATIQRIIKRSAALLKV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEAA EIA+RSRGTPRI LLRRVRDFA+V TIT EIA +L L ID+ G D Sbjct: 203 PIIDEAAAEIALRSRGTPRICNSLLRRVRDFAQVKGNGTITPEIATMSLQALNIDQYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR+ Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVATQ 322 Query: 322 IAWQHLG 328 +A+ HLG Sbjct: 323 LAYDHLG 329 >gi|53711454|ref|YP_097446.1| Holliday junction DNA helicase RuvB [Bacteroides fragilis YCH46] gi|60679724|ref|YP_209868.1| Holliday junction DNA helicase RuvB [Bacteroides fragilis NCTC 9343] gi|253564484|ref|ZP_04841941.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 3_2_5] gi|265764853|ref|ZP_06093128.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_16] gi|68715391|sp|Q650B4|RUVB_BACFR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|81317203|sp|Q5LIX0|RUVB_BACFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|52214319|dbj|BAD46912.1| Holliday junction DNA helicase RuvB [Bacteroides fragilis YCH46] gi|60491158|emb|CAH05906.1| putative holliday junction DNA helicase [Bacteroides fragilis NCTC 9343] gi|251948260|gb|EES88542.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 3_2_5] gi|263254237|gb|EEZ25671.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_16] gi|301161186|emb|CBW20724.1| putative holliday junction DNA helicase [Bacteroides fragilis 638R] Length = 342 Score = 351 bits (901), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 176/322 (54%), Positives = 235/322 (72%), Gaps = 4/322 (1%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L SR E+A LRP + E+F GQ + NL++F++AA+ RAEALDHVL GPPGLG Sbjct: 12 LTSRERDFENA----LRPLSFEDFNGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLG 67 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY Sbjct: 68 KTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLY 127 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + Sbjct: 128 SAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDD 187 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 L I+ R A + + + +AA EIA RSRGTPRIA LLRRVRDFA+V + +I EIA Sbjct: 188 ILSNIISRSAGILDVPCSSQAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIA 247 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 + AL L IDK G D++D + L I F GGPVG+ TI+ L E IE++ EP++I+ Sbjct: 248 NYALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIK 307 Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328 +GF++RTPRGR + +A++HLG Sbjct: 308 EGFLKRTPRGREVTELAYKHLG 329 >gi|325268269|ref|ZP_08134902.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella multiformis DSM 16608] gi|324989411|gb|EGC21361.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella multiformis DSM 16608] Length = 344 Score = 351 bits (901), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 172/307 (56%), Positives = 224/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +F+GQ + NL VF+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLRFRDFSGQQKVVENLSVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DV+FIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEPNDVIFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E L+ I++R A+L + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPETLQRIIKRSAQLLKV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEAA EIA RSRGTPRI LLRRVRDFA+V TIT EIA +L L IDK G D Sbjct: 203 PIVDEAAAEIARRSRGTPRICNSLLRRVRDFAQVKGNGTITPEIAGLSLQSLNIDKFGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR+ Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVATR 322 Query: 322 IAWQHLG 328 +A+ HLG Sbjct: 323 LAYTHLG 329 >gi|295091402|emb|CBK77509.1| Holliday junction DNA helicase, RuvB subunit [Clostridium cf. saccharolyticum K10] Length = 331 Score = 351 bits (901), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 172/324 (53%), Positives = 234/324 (72%), Gaps = 1/324 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ +V++ED I + LRP+ L E+ GQ S LK+FI+AAK+R E LDHVLF GPPGL Sbjct: 5 IITTDVTEEDKKIETSLRPQLLSEYIGQERIKSTLKIFIDAAKSRKEPLDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL ++A E+GVN + TSGP I K G++AA+L L + DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLCGIIANEMGVNMKVTSGPAIEKPGEIAAILNGLSEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+M+G+ SARS+++ L +FTL+ ATTR GLLT PL+DRFGI +++FY Sbjct: 125 YPAMEDYAIDIMLGKDSSARSIRLELPKFTLVGATTRAGLLTAPLRDRFGIIQKMDFYTP 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +LKTIV R A + + + +E A EIA RSRGTPR+A RLL+RVRDFA+V + IT+ + Sbjct: 185 AELKTIVMRSADVMQVKIEEEGAFEIARRSRGTPRLANRLLKRVRDFAQVKYDGVITKAV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AD AL L +DK+G D D L + + F GGPVG+ET++A L E +ED+ EPY++ Sbjct: 245 ADFALDILDVDKLGLDNNDRAILNAMIQKFSGGPVGLETLAACLGEDAGTLEDVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 G I RTPRGR+ A+ HLG+ Sbjct: 305 MNGLINRTPRGRVATEAAYHHLGL 328 >gi|210635284|ref|ZP_03298480.1| hypothetical protein COLSTE_02411 [Collinsella stercoris DSM 13279] gi|210158445|gb|EEA89416.1| hypothetical protein COLSTE_02411 [Collinsella stercoris DSM 13279] Length = 356 Score = 351 bits (901), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 170/329 (51%), Positives = 240/329 (72%), Gaps = 1/329 (0%) Query: 3 DREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 D E ++ ++ +D D+ LRP+ L+++ GQ +LK+ IEAA++R E+LDHV+F G Sbjct: 24 DNERFVTGELTSDDLDVERSLRPQRLDDYCGQDHIKQSLKILIEAAQSRGESLDHVIFSG 83 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA VVA E+G ++TSGP IA+ GDLAA+LTNL+ DVLFIDEIHRL+ V Sbjct: 84 PPGLGKTTLATVVANEMGAQIKTTSGPAIARTGDLAAILTNLQPGDVLFIDEIHRLNRQV 143 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMEDF LD+++G+GP+ARS+++++ FTL+ ATTR G+LT PL+DRFGI RL+ Sbjct: 144 EEILYPAMEDFSLDIVIGKGPAARSIRLDIPHFTLVGATTRSGMLTGPLRDRFGISFRLD 203 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y IEDL IV R A + G+ + E+A E+A RSRGTPR+A RLL+RVRD+A+V +I Sbjct: 204 YYGIEDLADIVCRSAAILGVEIDRESAKEVASRSRGTPRLANRLLKRVRDYAQVKGEGSI 263 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 IA A+ ID++G D +D+R L + + F G VG+ T+++ E + +ED+ E Sbjct: 264 ELGIAQEAMAFFEIDELGLDWMDIRILETLCKTFRGRAVGLSTLASATGEDANTLEDVYE 323 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 PY++Q G I RTP+GR+ P A++HLG++ Sbjct: 324 PYLLQCGLIVRTPQGRMATPAAFEHLGME 352 >gi|254828234|ref|ZP_05232921.1| ruvB [Listeria monocytogenes FSL N3-165] gi|258600622|gb|EEW13947.1| ruvB [Listeria monocytogenes FSL N3-165] Length = 335 Score = 351 bits (901), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 180/329 (54%), Positives = 232/329 (70%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + S V E+ + LRP+ L ++ GQ + +NL VFIEAA R EALDHVL Sbjct: 1 MDERIISSETVDAEEVSFETSLRPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+G ++TSGP I + GDLA +LT+LE DVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAMVIAAEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+ LD+++G GP+ARSV+++L FTLI ATTR GLL+ PL+DRFG+ L Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E L IV R + + + D A EIA RSRGTPRIA RLL+RVRDFA+V T Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +D G D +D + L I ++F GGPVG++TI+A + E R+ IED+ Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QRTPRGR++ A+ HLGI Sbjct: 301 EPYLLQIGFLQRTPRGRIVTETAYNHLGI 329 >gi|18310929|ref|NP_562863.1| Holliday junction DNA helicase B [Clostridium perfringens str. 13] gi|20140041|sp|Q8XJ14|RUVB_CLOPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|18145611|dbj|BAB81653.1| holliday junction DNA helicase [Clostridium perfringens str. 13] Length = 346 Score = 351 bits (900), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 169/307 (55%), Positives = 226/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + E+ GQ + L +FI+AA+ R EALDHV+ GPPGLGKTTLA ++A E+G N Sbjct: 21 LRPEKINEYIGQDKVKERLNIFIKAAQRREEALDHVILYGPPGLGKTTLANIIANEMGGN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I +AGDLAA+LT L DVLFIDEIHRL+ VEEILYPAMED+ LD+++G+G Sbjct: 81 LKITSGPAIERAGDLAAILTTLNTNDVLFIDEIHRLNRSVEEILYPAMEDYVLDIIIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +++S++++L +FTLI ATTR+G+L++PL+DR G+ + +Y E LK I+ R A++ G Sbjct: 141 AASKSIRLDLPKFTLIGATTRIGMLSSPLRDRLGVLCSMEYYTDEQLKEIIIRSAEILGC 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T+E A EIA RSRGTPRIA RLL+RVRDFAEV + IT E A +L L +D GFD Sbjct: 201 HITEEGAFEIAKRSRGTPRIANRLLKRVRDFAEVLYDNEITEEAAKKSLEILEVDGEGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I NF GGPVGIET++ + E D IED+ EPY++Q+GFI RTPRGR+ Sbjct: 261 RIDNKILEAIIDNFNGGPVGIETLAYFVGEELDTIEDVYEPYLLQKGFIVRTPRGRMATD 320 Query: 322 IAWQHLG 328 A++HLG Sbjct: 321 KAYKHLG 327 >gi|259502858|ref|ZP_05745760.1| crossover junction endoribonuclease subunit B [Lactobacillus antri DSM 16041] gi|259169225|gb|EEW53720.1| crossover junction endoribonuclease subunit B [Lactobacillus antri DSM 16041] Length = 342 Score = 351 bits (900), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 172/333 (51%), Positives = 236/333 (70%), Gaps = 3/333 (0%) Query: 3 DREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 D++ + + SQ++A+ + LRP+TL ++ GQ + L+V+IEAA+ R EALDHVL Sbjct: 5 DKQDNVLSDRSQDEAEEQIELTLRPQTLRDYIGQAQLKDKLRVYIEAAREREEALDHVLL 64 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA V+A E+ VN ++TSGP I K GDL ALL L+ DVLFIDEIHRL Sbjct: 65 YGPPGLGKTTLAMVIAHEMAVNIKTTSGPAIEKPGDLVALLNELQPGDVLFIDEIHRLPK 124 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LY AMED+ +D++VGEGP+A V L FTLI ATTR G+L+ PL+DRFGI Sbjct: 125 VVEEMLYSAMEDYYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVEH 184 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 +N+Y ++LK I+ R A++ + ++ A E+A+RSRGTPRIA RLL+RVRDFA+VAH + Sbjct: 185 MNYYNQDELKQIIFRSARIFATRIEEQGAHELALRSRGTPRIANRLLKRVRDFAQVAHQQ 244 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I I AL L +D G D++D + L + + GGPVG++TI+A + E + IE++ Sbjct: 245 AIGASIVKQALDLLQVDSRGLDEIDRKMLLTMINFYHGGPVGLKTIAANIGEETNTIEEM 304 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQ G+I RTPRGR++ P A+ HLGI+ P Sbjct: 305 YEPYLIQIGYISRTPRGRVVTPAAYDHLGINYP 337 >gi|253682370|ref|ZP_04863167.1| holliday junction DNA helicase RuvB [Clostridium botulinum D str. 1873] gi|253562082|gb|EES91534.1| holliday junction DNA helicase RuvB [Clostridium botulinum D str. 1873] Length = 337 Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 179/335 (53%), Positives = 238/335 (71%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++S + +ED D+ LRP L E+ GQ + L +FIEAAK R E+LDHVL Sbjct: 1 MEDR--IVSASYKREDFDVEHSLRPEKLTEYIGQSKVKEKLSIFIEAAKIRQESLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++ARE+G + TSGP I +AGD+AA+LT+L D DVLFIDEIHRL+ Sbjct: 59 YGPPGLGKTTLANIIAREMGGTLKVTSGPAIERAGDMAAILTSLNDYDVLFIDEIHRLNR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEI+YPAMED LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+ Sbjct: 119 TVEEIMYPAMEDNVLDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVLSA 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + FY ++LK IV R +K+ + T++AA EIA RSRGTPRIA R+L+RVRD+ +V Sbjct: 179 MEFYNEDELKEIVLRSSKILDVVTTEDAAFEIARRSRGTPRIANRILKRVRDYCDVKGNG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I IA +AL L IDK GFD +D R L I NF GGPVG+ET++ + E D I+D+ Sbjct: 239 IIDINIAQSALELLEIDKEGFDNIDNRILEAIIDNFKGGPVGLETLAYFIGEELDTIQDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY++Q+GFI R PRGR A++HL D + Sbjct: 299 YEPYLLQKGFIIRMPRGRKATEKAYKHLKRDFKEQ 333 >gi|295103888|emb|CBL01432.1| Holliday junction DNA helicase, RuvB subunit [Faecalibacterium prausnitzii SL3/3] Length = 351 Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 170/318 (53%), Positives = 228/318 (71%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D + + LRP+ LE++ GQ +A NLK+++EAAK R E +DH+L GPPGLGKTTLA ++A Sbjct: 21 DNEENNLRPQHLEDYIGQEKAKQNLKIYLEAAKRRGEPVDHILLYGPPGLGKTTLAGIIA 80 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 E+GV R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS VEE+LYPA+ED+ LD Sbjct: 81 NEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLYPALEDYALD 140 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L Y ++L I+ R Sbjct: 141 IMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPDELSRIIMRS 200 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A + +T E A E+A SRGTPR+A R L+R+RDFA V I R++A L R+ + Sbjct: 201 AGILDQPITPEGAYELAKCSRGTPRVANRFLKRIRDFATVLGDGIIDRDVALLGLKRMDV 260 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D +G D+LD L I + GGPVG+ET++A L E +EDL EPY++Q GF+ RTPR Sbjct: 261 DALGLDELDRSLLRAIIEMYNGGPVGLETLAAALGEEAVTLEDLCEPYLMQMGFLTRTPR 320 Query: 316 GRLLMPIAWQHLGIDIPH 333 GR +A++HLG+ P Sbjct: 321 GRCATRLAYEHLGMKAPE 338 >gi|300727521|ref|ZP_07060912.1| holliday junction DNA helicase RuvB [Prevotella bryantii B14] gi|299775224|gb|EFI71825.1| holliday junction DNA helicase RuvB [Prevotella bryantii B14] Length = 344 Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 175/324 (54%), Positives = 232/324 (71%), Gaps = 1/324 (0%) Query: 9 SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 + N+S + + + LRP +F+GQ NL+VF+EAAK R E LDH L GPPGLGK Sbjct: 9 NENISPAEKEFENALRPLQFNDFSGQQNVVENLRVFVEAAKYRGEPLDHTLLHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY Sbjct: 69 TTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+++D+M+ +GPSARS++I+L+ FTLI ATTR GLLT PL+ RFGI + L +Y + Sbjct: 129 AMEDYRIDIMIDKGPSARSIQIDLNPFTLIGATTRSGLLTAPLRARFGINLHLQYYNPDT 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L+ I++R + L + + DEAA EI+ RSRGTPRIA LLRRVRDFA+V TIT EIA Sbjct: 189 LQRIIKRSSSLLNVPIEDEAAVEISRRSRGTPRIANALLRRVRDFAQVKGNGTITPEIAK 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L ID+ G D+ D + L I F GGPVG+ TI+ + E +E++ EP++I + Sbjct: 249 FALQALNIDQYGLDETDNKILLAIIDKFRGGPVGLSTIATAIGEDTGTVEEVYEPFLIME 308 Query: 308 GFIQRTPRGRLLMPIAWQHLGIDI 331 GFI+RTPRGR+ +A++HLG +I Sbjct: 309 GFIKRTPRGRMATKLAFEHLGRNI 332 >gi|229814936|ref|ZP_04445274.1| hypothetical protein COLINT_01979 [Collinsella intestinalis DSM 13280] gi|229809423|gb|EEP45187.1| hypothetical protein COLINT_01979 [Collinsella intestinalis DSM 13280] Length = 355 Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 170/327 (51%), Positives = 241/327 (73%), Gaps = 1/327 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++ ++ +D D+ LRP+ LE++ GQ +L++ IEAA++R E+LDHV+F GPP Sbjct: 25 ERFVTGELTSDDLDVERGLRPQRLEDYCGQEHIKQSLRILIEAAQSRGESLDHVIFSGPP 84 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA VVA E+G ++TSGP IA+ GDLAA+LTNL+ DVLFIDEIHRL+ VEE Sbjct: 85 GLGKTTLAAVVANEMGAQIKTTSGPAIARTGDLAAILTNLQPGDVLFIDEIHRLNRQVEE 144 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 ILYPAMEDF LD+++G+GP+ARS+++++ RFTL+ ATTR G+LT PL+DRFGI RL++Y Sbjct: 145 ILYPAMEDFSLDIVIGKGPAARSIRLDIPRFTLVGATTRSGMLTGPLRDRFGISYRLDYY 204 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 IEDL IV R + + G+++ E+A EIA RSRGTPR+A RLL+RVRD+A+V +I Sbjct: 205 GIEDLADIVCRSSSILGVSIDRESAKEIASRSRGTPRLANRLLKRVRDYAQVRGEGSIEL 264 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 IA A+ ID++G D +D+R L + + F G VG+ T+++ E + +ED+ EPY Sbjct: 265 GIAQEAMRFFEIDELGLDWMDIRILETLCKTFRGRAVGLSTLASATGEDANTLEDVYEPY 324 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330 ++Q G I RTP+GR+ P A++HLG++ Sbjct: 325 LLQCGLIVRTPQGRMATPAAFEHLGME 351 >gi|312870459|ref|ZP_07730579.1| Holliday junction DNA helicase RuvB [Lactobacillus oris PB013-T2-3] gi|311094016|gb|EFQ52340.1| Holliday junction DNA helicase RuvB [Lactobacillus oris PB013-T2-3] Length = 340 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 171/335 (51%), Positives = 238/335 (71%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M +++ + + SQ++A+ + LRP+ L+++ GQ + + L+V+I+AAK R EALDHV Sbjct: 1 MNEKQNDVLSDQSQDEAEEQIELTLRPQNLQDYIGQAQLKNKLRVYIKAAKEREEALDHV 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTLA V+A E+ VN ++TSGP I K GDL ALL L+ DVLFIDEIHRL Sbjct: 61 LLYGPPGLGKTTLAMVIAHEMAVNIKTTSGPAIEKPGDLVALLNELQPGDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 +VEE+LY AMED+ +D++VGEGP+A V L FTLI ATTR G+L+ PL+DRFGI Sbjct: 121 PKVVEEMLYSAMEDYYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIV 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 +N+Y ++LK I+ R A++ + ++ A E+A+RSRGTPRIA RLL+RVRDFA+VAH Sbjct: 181 EHMNYYNQDELKQIIFRSARIFDTQIEEQGAHELALRSRGTPRIANRLLKRVRDFAQVAH 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 + I I AL L +D G D++D + L + + GGPVG++TI+A + E + IE Sbjct: 241 RQAIDAAIVKQALDLLQVDSRGLDEIDRKMLLTMINFYQGGPVGLKTIAANIGEETNTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++ EPY+IQ G+I RTPRGR++ P A+ HLGI+ P Sbjct: 301 EMYEPYLIQIGYISRTPRGRVVTPAAYDHLGINYP 335 >gi|255020125|ref|ZP_05292195.1| Holliday junction DNA helicase RuvB [Acidithiobacillus caldus ATCC 51756] gi|254970418|gb|EET27910.1| Holliday junction DNA helicase RuvB [Acidithiobacillus caldus ATCC 51756] Length = 345 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 178/332 (53%), Positives = 235/332 (70%), Gaps = 1/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M++R G LS D LRPR L+E+ GQ +L +FI+AA+ R EALDHVL Sbjct: 1 MVER-GPLSLEEDGSDKLDRALRPRHLQEYLGQARLRDSLALFIDAARGRGEALDHVLLF 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A+E+G + TSGP++ K GDLAA+LTNL+ DVLF+DEIHRLS + Sbjct: 60 GPPGLGKTTLAHIIAQEMGAGLKVTSGPILDKPGDLAAILTNLQPFDVLFVDEIHRLSPV 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPA+ED++LD+++GEGPSARS+KI L FTLI ATTR GLLT+PL+DRFGI L Sbjct: 120 VEEILYPALEDYELDILIGEGPSARSIKIALPPFTLIGATTRAGLLTSPLRDRFGISFHL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +++L IV R A++ A EIA RSRGTPRIA RLLRRVRD+A+V T Sbjct: 180 EFYSVDELAQIVSRSARILQTPFDAAGAREIARRSRGTPRIANRLLRRVRDYAQVRGNGT 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I A AAL + +D+ GFD D + L + + FGGGPVG+E+++A + E R IE+++ Sbjct: 240 IDEATAQAALRLMEVDEYGFDGQDRKLLQAVIQRFGGGPVGVESLAAAIGEERGTIEEVL 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EP++IQ+G++ RTPRGR ++ LG+ P Sbjct: 300 EPFLIQRGYLVRTPRGRCATQQSYLALGLPCP 331 >gi|302386616|ref|YP_003822438.1| Holliday junction DNA helicase RuvB [Clostridium saccharolyticum WM1] gi|302197244|gb|ADL04815.1| Holliday junction DNA helicase RuvB [Clostridium saccharolyticum WM1] Length = 332 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 177/324 (54%), Positives = 243/324 (75%), Gaps = 1/324 (0%) Query: 7 LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ V++ED I LRP+ LEE+ GQ + +NLKV+I+AAKAR E+LDHVLF GPPGL Sbjct: 5 IITTEVTEEDKRIEPNLRPKYLEEYIGQEKIRTNLKVYIDAAKARGESLDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLSAIIANEMGVNMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF +D+M+G+ SARS++++L +FTL+ ATTR GLLT PL+DRFG+ +L FY Sbjct: 125 YPAMEDFAIDIMLGKDSSARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVQKLEFYTP 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++LK IV R A++ + + +E A EIA RSRGTPR+A RLL+RVRDFA++ + TIT+E+ Sbjct: 185 QELKIIVCRSARVLQVEIEEEGAAEIAKRSRGTPRLANRLLKRVRDFAQIKYNGTITKEV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AD AL L +DK+G D D LT + F GGPVG++T++A L E +ED+ EPY++ Sbjct: 245 ADFALDILDVDKLGLDCNDRAILTTMIEKFAGGPVGLDTLAASLGEDAGTLEDVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 GFI RT RGR+ A++HLGI Sbjct: 305 MNGFINRTSRGRVATERAYEHLGI 328 >gi|88607797|ref|YP_504790.1| Holliday junction DNA helicase B [Anaplasma phagocytophilum HZ] gi|123736453|sp|Q2GLG1|RUVB_ANAPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|88598860|gb|ABD44330.1| holliday junction DNA helicase RuvB [Anaplasma phagocytophilum HZ] Length = 329 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 178/313 (56%), Positives = 223/313 (71%), Gaps = 2/313 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED LRP +EEF GQ E NLKVFI++A R LDHVL GPPGLGKTTLA ++ Sbjct: 13 EDERNFALRPSLIEEFVGQSEIIENLKVFIKSAYERRATLDHVLLYGPPGLGKTTLAHII 72 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A+EL V+ RSTSGP+++KAGDLAA+LTNL+ DVLFIDEIHRL +EEILY AMED L Sbjct: 73 AKELKVSLRSTSGPLLSKAGDLAAILTNLQPMDVLFIDEIHRLHRNIEEILYSAMEDCCL 132 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VGEG AR+++I+L FTL+ ATTR GL++NPL+DRFGIP+ L FY +E+L +++R Sbjct: 133 DIVVGEGCGARTLRIDLPAFTLVGATTRFGLISNPLRDRFGIPLHLEFYSVEELMLVIKR 192 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + + D A EIA RSRGTPRIA RL RRVRDF V I AD+AL L Sbjct: 193 AAHVICTDIDDSGAYEIASRSRGTPRIALRLFRRVRDFMVVERQSIIDNHFADSALFNLG 252 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +DK G D++D++YL+ I VGIETI+A LSE IE+ IEPY+++ GFIQRTP Sbjct: 253 VDKSGLDKMDIKYLSFIYE--AKNAVGIETIAAALSEDVGNIEETIEPYLLKIGFIQRTP 310 Query: 315 RGRLLMPIAWQHL 327 RGR+L A +HL Sbjct: 311 RGRILTTKAIEHL 323 >gi|89099001|ref|ZP_01171881.1| Holliday junction DNA helicase B [Bacillus sp. NRRL B-14911] gi|89086405|gb|EAR65526.1| Holliday junction DNA helicase B [Bacillus sp. NRRL B-14911] Length = 333 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 172/311 (55%), Positives = 226/311 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL ++ GQ + NL+VFI+AA+ R E LDHVL GPPGLGKTTLA ++A E+GVN Sbjct: 21 LRPQTLRQYIGQDKVKENLEVFIQAARIRGETLDHVLLYGPPGLGKTTLASIIANEMGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+T+GP I + GDLAA+LT LE DVLFIDEIHRL +EE+LYPAMEDF LD+++G+G Sbjct: 81 LRTTAGPAIERPGDLAAILTALEPGDVLFIDEIHRLPRSIEEVLYPAMEDFCLDIVIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV+++L FTL+ ATTR G ++ PL+DRFG+ RL +Y LK IV R A + Sbjct: 141 PSARSVRLDLPPFTLVGATTRAGSVSAPLRDRFGVLCRLEYYNESQLKNIVSRTADVLET 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D AA EIA RSRGTPRIA RLLRRVRDFA+V +I +A +L L +D++G D Sbjct: 201 GIDDLAASEIARRSRGTPRIANRLLRRVRDFAQVKGDGSIDAALAHDSLELLQVDRLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+ETI+A + E IED+ EPY++Q GF+QRTPRGR++ Sbjct: 261 HIDHKLLRGIIEKFRGGPVGLETIAATIGEESHTIEDVYEPYLLQIGFLQRTPRGRIVTH 320 Query: 322 IAWQHLGIDIP 332 + + HL +++P Sbjct: 321 LVYHHLNLELP 331 >gi|319900509|ref|YP_004160237.1| Holliday junction DNA helicase subunit RuvB [Bacteroides helcogenes P 36-108] gi|319415540|gb|ADV42651.1| Holliday junction DNA helicase subunit RuvB [Bacteroides helcogenes P 36-108] Length = 344 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 178/331 (53%), Positives = 240/331 (72%), Gaps = 4/331 (1%) Query: 2 MDREGLLSRN---VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++E RN +S ++ D + LRP E+F+GQ + NL++F++AA+ R EALDHV Sbjct: 1 MEQEDFDIRNQQQLSSKERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHV 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRL Sbjct: 61 LLHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S IVEE LY AMED+++D+M+ +GPSARS++I+LS FTL+ ATTR GLLT PL+ RFGI Sbjct: 121 SPIVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLSPFTLVGATTRSGLLTAPLRARFGIN 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 + L +Y+ E L I++R + + + + AA EIA RSRGTPRIA LLRRVRDFA+V Sbjct: 181 MHLEYYDDEVLSGIIRRSSGILDVPCSTRAAAEIASRSRGTPRIANALLRRVRDFAQVKG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 + +I EIA+ AL L IDK G D++D + L I F GGPVG+ TI+ L E IE Sbjct: 241 SGSIDTEIANYALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 ++ EP++I++GF++RTPRGR + +A++HLG Sbjct: 301 EVYEPFLIKEGFMKRTPRGREVTELAYKHLG 331 >gi|187933032|ref|YP_001885222.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B str. Eklund 17B] gi|238691635|sp|B2TMZ2|RUVB_CLOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|187721185|gb|ACD22406.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B str. Eklund 17B] Length = 344 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 173/315 (54%), Positives = 232/315 (73%), Gaps = 1/315 (0%) Query: 15 EDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ED + L LRP+ + E+ GQ + L +FI+AA+ R EALDHVL GPPGLGKTTLA + Sbjct: 12 EDGNSELSLRPQKINEYIGQDKVKERLNIFIKAARNRKEALDHVLLYGPPGLGKTTLANI 71 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A+E+ + + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+ VEEILYPAMED+ Sbjct: 72 IAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEIHRLNRSVEEILYPAMEDYA 131 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G+G +A+S++++L +FTLI ATTR+G+LT+PL+DRFG+ + +Y+ LK IV Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDRFGVLCAMEYYDETQLKEIVI 191 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + G +T+E A EIA RSRGTPRIA RLL+RVRD++EV K I+ + A AL L Sbjct: 192 RSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYSEVKSNKVISLKEARDALELL 251 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD++D + L I NF GGPVGIET+S + E IED+ EPY++Q+GFI RT Sbjct: 252 EVDNQGFDKVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTIEDVYEPYLLQKGFIVRT 311 Query: 314 PRGRLLMPIAWQHLG 328 PRGR+ A++HLG Sbjct: 312 PRGRIASDKAYKHLG 326 >gi|328953596|ref|YP_004370930.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfobacca acetoxidans DSM 11109] gi|328453920|gb|AEB09749.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfobacca acetoxidans DSM 11109] Length = 359 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 179/328 (54%), Positives = 237/328 (72%), Gaps = 1/328 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M ++E +S ED + + LRPR+L EF GQ E +L++ I AAK R+EALDH+L Sbjct: 18 MEEQERFVSSRRHPEDLGLEIGLRPRSLREFVGQDEVKRSLELAITAAKGRSEALDHILL 77 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 G PGLGKTTLA ++A+ELG R+TSGPVI + GDLAALLTN + DVLFIDEIHRL Sbjct: 78 HGHPGLGKTTLATIIAQELGAGLRTTSGPVIERPGDLAALLTNQKPGDVLFIDEIHRLPH 137 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED++LDL++G+GP AR++++++ RFTL+ ATTR GLLT L+DRFG+ +R Sbjct: 138 VVEEVLYPAMEDYKLDLIIGQGPGARAIRLDIPRFTLVGATTRAGLLTPALRDRFGLMLR 197 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + FY + L+ IV R A + + A EIA RSRGTPRIA RLL+RVRDFA+V Sbjct: 198 VEFYHPDHLQAIVTRSAGALQIDIEVAGAAEIARRSRGTPRIANRLLKRVRDFAQVHGDG 257 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 ITR+IADAAL L +D GFD++D R L I F GGPVG++T++A L E RD +ED+ Sbjct: 258 RITRQIADAALNLLEVDNRGFDRMDRRILLTIIEKFDGGPVGVDTLAAALCEERDTLEDV 317 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EP++IQ GF+ RTPRGR+ +A ++ Sbjct: 318 YEPFLIQCGFLNRTPRGRVATRLAQEYF 345 >gi|227544209|ref|ZP_03974258.1| crossover junction endoribonuclease subunit B [Lactobacillus reuteri CF48-3A] gi|300908205|ref|ZP_07125671.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus reuteri SD2112] gi|227185802|gb|EEI65873.1| crossover junction endoribonuclease subunit B [Lactobacillus reuteri CF48-3A] gi|300894632|gb|EFK87988.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus reuteri SD2112] Length = 338 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 172/334 (51%), Positives = 239/334 (71%), Gaps = 2/334 (0%) Query: 1 MMDREGLLSRNVS-QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M + G+LS + S +E+ + + LRP+ L E+ GQ + L+V+I+AA++R EALDHVL Sbjct: 1 MENDHGILSDHPSGEEENQVEITLRPQKLREYIGQPKIKHELEVYIKAAQSREEALDHVL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA V+A E+GVN ++TSGP I K GDL ALL L+ DVLF+DEIHRL Sbjct: 61 LYGPPGLGKTTLAMVIANEMGVNIKTTSGPAIEKPGDLVALLNELKPGDVLFVDEIHRLP 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEE+LY AMED+ +D+++GEGP+A V L FTLI ATTR G+L+ PL+DRFGI Sbjct: 121 KVVEEMLYSAMEDYYIDIVIGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 +N+Y ++L I+ R AK+ ++ +E A E+++RSRGTPRIA RLL+RVRDFA+VA Sbjct: 181 HMNYYTQDELTKIIFRSAKIFHTSIQNEGAHELSLRSRGTPRIANRLLKRVRDFAQVAGK 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 ++I I AL L +D G D++D + L + + GGPVG++TI+A + E + IE+ Sbjct: 241 QSIDSAIVKQALSLLQVDDRGLDEIDRKMLLTMINFYHGGPVGLKTIAANIGEETNTIEE 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 + EPY++Q GFI RTPRGRL+ P A++HLGI+ P Sbjct: 301 MYEPYLLQIGFISRTPRGRLVTPTAYEHLGIEYP 334 >gi|299822807|ref|ZP_07054693.1| crossover junction ATP-dependent DNA helicase RuvB [Listeria grayi DSM 20601] gi|299816336|gb|EFI83574.1| crossover junction ATP-dependent DNA helicase RuvB [Listeria grayi DSM 20601] Length = 337 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 182/321 (56%), Positives = 227/321 (70%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S N +E ++SL RP+ L + GQ + NLK+FIEAAK R EALDHVL GPPGLGKT Sbjct: 12 SVNPEEESFEMSL-RPQLLAHYIGQDKVKDNLKIFIEAAKKRNEALDHVLLYGPPGLGKT 70 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA V+A E+G R+TSGP I + GDLA +LT+LE DVLFIDEIHRLS VEEILYPA Sbjct: 71 TLAMVIANEMGAGIRTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRTVEEILYPA 130 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED+ +D+++G GP+A+SV+++L FTLI ATTR G L+ PL+DRFG+ L FY L Sbjct: 131 MEDYFIDIVIGNGPTAKSVRLDLPPFTLIGATTRAGQLSAPLRDRFGVIDHLEFYTEAQL 190 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + I+ R A + V A EIA RSRGTPRIA RLL+RVRDFA+V +T +A Sbjct: 191 EAIITRTASILDTEVDVPGAEEIARRSRGTPRIANRLLKRVRDFADVKADGYVTERLAKE 250 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L +D G D +D R L I +FGGGPVGIETI+A + E R+ IED+ EPY++Q G Sbjct: 251 ALELLRVDPRGLDTIDQRLLQTIIHSFGGGPVGIETIAASIGEERETIEDMQEPYLLQIG 310 Query: 309 FIQRTPRGRLLMPIAWQHLGI 329 F+QRTPRGRL+ A+ HLGI Sbjct: 311 FLQRTPRGRLVTERAYNHLGI 331 >gi|46907760|ref|YP_014149.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes serotype 4b str. F2365] gi|226224133|ref|YP_002758240.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes Clip81459] gi|254824409|ref|ZP_05229410.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL J1-194] gi|254852156|ref|ZP_05241504.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL R2-503] gi|254931467|ref|ZP_05264826.1| ruvB [Listeria monocytogenes HPB2262] gi|254992898|ref|ZP_05275088.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL J2-064] gi|255520700|ref|ZP_05387937.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL J1-175] gi|300764801|ref|ZP_07074791.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL N1-017] gi|68715516|sp|Q71ZD8|RUVB_LISMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|259495672|sp|C1KVH9|RUVB_LISMC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|46881029|gb|AAT04326.1| holliday junction DNA helicase RuvB [Listeria monocytogenes serotype 4b str. F2365] gi|225876595|emb|CAS05304.1| Putative Holliday junction DNA helicase RuvB [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605459|gb|EEW18067.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL R2-503] gi|293583019|gb|EFF95051.1| ruvB [Listeria monocytogenes HPB2262] gi|293593644|gb|EFG01405.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL J1-194] gi|300514477|gb|EFK41534.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL N1-017] gi|328465568|gb|EGF36797.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes 1816] gi|328474892|gb|EGF45692.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes 220] gi|332311974|gb|EGJ25069.1| Holliday junction ATP-dependent DNA helicase ruvB [Listeria monocytogenes str. Scott A] Length = 335 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 180/329 (54%), Positives = 231/329 (70%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + S V E+ + LRP+ L ++ GQ + +NL VFIEAA R EALDHVL Sbjct: 1 MDERIISSETVDAEEVSFETSLRPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+G ++TSGP I + GDLA +LT+LE DVLFIDEIHRLS Sbjct: 61 GPPGLGKTTLAMVIAAEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+ LD+++G GP+ARSV+++L FTLI ATTR GLL+ PL+DRFG+ L Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E L IV R + + + D A EIA RSRGTPRIA RLL+RVRDFA+V T Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +D G D +D + L I ++F GGPVG++TI+A + E R+ IED+ Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QRTPRGR+ A+ HLGI Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329 >gi|218961946|ref|YP_001741721.1| Holliday junction helicase, subunit B [Candidatus Cloacamonas acidaminovorans] gi|167730603|emb|CAO81515.1| Holliday junction helicase, subunit B [Candidatus Cloacamonas acidaminovorans] Length = 338 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 170/322 (52%), Positives = 233/322 (72%), Gaps = 3/322 (0%) Query: 11 NVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 N + + D+ L LRPRTL+EF GQ L + I+AAK R E+LDH+L GPPGLGK Sbjct: 7 NPDKLNEDVELDRALRPRTLKEFIGQTHIKELLDISIKAAKLRGESLDHILLYGPPGLGK 66 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA ++ARE+GVN +SGPVI K DLA +LTNL+ + LFIDEIHRLS I+EE +YP Sbjct: 67 TTLAGIIAREMGVNITVSSGPVIEKPSDLAGILTNLQRHETLFIDEIHRLSHIIEEYIYP 126 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMEDF++++++ GP++R++KI L FTL+ ATTR GLLT PL+DRFGI +RL++Y+ E Sbjct: 127 AMEDFEMEIILDSGPNSRTLKIPLEHFTLVGATTRAGLLTPPLRDRFGIILRLDYYDQES 186 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 + I++R A+L + D+ EIA RSRGTPRIA RLLRRVRD+A++ IT +IA Sbjct: 187 IAQIIRRSARLLNIPTEDDGVQEIARRSRGTPRIANRLLRRVRDYAQIKGEGIITLDIAL 246 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 +AL L +D G D++D R LT I N+ GGPVGI+TI+ + E IE++ EPY++QQ Sbjct: 247 SALQMLQVDNAGLDEMDKRILTTIIENYNGGPVGIKTIATAIGEDSGTIEEIFEPYLVQQ 306 Query: 308 GFIQRTPRGRLLMPIAWQHLGI 329 GF++R+P+GR + A++HLG+ Sbjct: 307 GFLERSPQGRKVTFKAYKHLGL 328 >gi|261878859|ref|ZP_06005286.1| crossover junction endoribonuclease subunit B [Prevotella bergensis DSM 17361] gi|270334538|gb|EFA45324.1| crossover junction endoribonuclease subunit B [Prevotella bergensis DSM 17361] Length = 343 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 174/317 (54%), Positives = 227/317 (71%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 S E + LRP +F GQ + NL+VF+EAAK R E LDH L GPPGLGKTTL+ Sbjct: 13 TSNEKEFENALRPLCFGDFNGQQKVVENLQVFVEAAKYRGEPLDHTLLYGPPGLGKTTLS 72 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRL +VEE LY AMED Sbjct: 73 NIIANELGVGFKITSGPVLDKPGDLAGILTSLEPSDVLFIDEIHRLQPVVEEYLYSAMED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +++D+M+ +GPSARS++I+L+ FTLI ATTR G+LT PL+ RFGI + L +Y+ E L I Sbjct: 133 YRIDIMIDKGPSARSIQIDLNPFTLIGATTRSGMLTAPLRARFGINMHLEYYDPETLTRI 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R A+L + V DEAA EIA RSRGTPR+A LLRRVRDFA+V TIT +IA +L Sbjct: 193 IRRSAQLLKVPVDDEAAMEIARRSRGTPRVANGLLRRVRDFAQVKGNGTITTDIAQLSLQ 252 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L ID+ G D++D + LT I F GGPVG+ TI+ + E +E++ EP++I +GFI+ Sbjct: 253 ALNIDQYGLDEIDNKILTTIIDKFRGGPVGVSTIATAIGEDAGTVEEVYEPFLIMEGFIK 312 Query: 312 RTPRGRLLMPIAWQHLG 328 RTPRGR+ +A+ HLG Sbjct: 313 RTPRGRMATRLAYDHLG 329 >gi|188589876|ref|YP_001920352.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E3 str. Alaska E43] gi|238689662|sp|B2V338|RUVB_CLOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|188500157|gb|ACD53293.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E3 str. Alaska E43] Length = 344 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 172/315 (54%), Positives = 231/315 (73%), Gaps = 1/315 (0%) Query: 15 EDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ED + L LRP+ + E+ GQ + L +FI+AAK R EALDHVL GPPGLGKTTLA + Sbjct: 12 EDGNSELSLRPQKINEYIGQDKVKERLNIFIKAAKNRKEALDHVLLYGPPGLGKTTLANI 71 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A+E+ + + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+ VEEILYPAMED+ Sbjct: 72 IAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEIHRLNRSVEEILYPAMEDYA 131 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G+G +A+S++++L +FTLI ATTR+G+LT+PL+DRFG+ + +Y+ LK IV Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDRFGVLCAMEYYDENQLKEIVI 191 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + G +T+E A EIA RSRGTPRIA RLL+RVRD++EV I+ + A AL L Sbjct: 192 RSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYSEVKSNTVISLKEAREALELL 251 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D GFD++D + L I NF GGPVGIET+S + E +ED+ EPY++Q+GFI RT Sbjct: 252 EVDNQGFDKVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTVEDVYEPYLLQKGFIVRT 311 Query: 314 PRGRLLMPIAWQHLG 328 PRGR+ A++HLG Sbjct: 312 PRGRIASDKAYKHLG 326 >gi|269216142|ref|ZP_06159996.1| holliday junction DNA helicase RuvB [Slackia exigua ATCC 700122] gi|269130401|gb|EEZ61479.1| holliday junction DNA helicase RuvB [Slackia exigua ATCC 700122] Length = 366 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 172/308 (55%), Positives = 227/308 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ +L + I+AA+ R E +DHVLF GPPGLGKTTLA VVA EL N Sbjct: 56 LRPKRLIDYLGQTRIKESLSILIQAARQRGECMDHVLFSGPPGLGKTTLATVVANELDAN 115 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP IA+ GDLAA+LTNLED DVLFIDEIHRL+ VEE+LYPA+ED+ LD++VG+G Sbjct: 116 IRTTSGPAIARPGDLAAILTNLEDGDVLFIDEIHRLNRQVEEVLYPALEDYVLDIVVGKG 175 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS++++L RFTL+ ATTR GLLT PL+DRFGI RLN+Y E+L IV R A + + Sbjct: 176 PAARSIRLDLPRFTLVGATTRTGLLTGPLRDRFGIAFRLNYYTPEELSDIVARSAGILDV 235 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPR+A RLL+RVRD+A+V I ++A AL +D +G D Sbjct: 236 PIDADGAIEIARRSRGTPRLANRLLKRVRDWAQVRGTGIIDEDVAAQALSFFEVDSLGLD 295 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD R L ++ +FGG VG+ T+++ LSE +D +ED+ EP++IQQG I RTP+GRL Sbjct: 296 ALDNRILELLCVSFGGRAVGLSTLASALSEDQDTVEDVYEPFLIQQGLIIRTPKGRLATD 355 Query: 322 IAWQHLGI 329 A++H+GI Sbjct: 356 RAYEHMGI 363 >gi|91216977|ref|ZP_01253940.1| Holliday junction DNA helicase B [Psychroflexus torquis ATCC 700755] gi|91184848|gb|EAS71228.1| Holliday junction DNA helicase B [Psychroflexus torquis ATCC 700755] Length = 340 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 174/319 (54%), Positives = 224/319 (70%), Gaps = 1/319 (0%) Query: 11 NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N +D ++ LRP + ++F GQ NL+VF++AA R EALDH LF GPPGLGKTT Sbjct: 11 NFDNQDHEVDRALRPLSFDDFAGQSHVLENLQVFVKAANLRGEALDHTLFHGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A EL + TSGPVI K GDLA LLTNLE RDVLFIDEIHRLS +VEE LY AM Sbjct: 71 LAHILANELQTGIKITSGPVIDKPGDLAGLLTNLEPRDVLFIDEIHRLSSVVEEYLYSAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 EDF++D+M+ GP+ARSV+INL+ FTL+ ATTR GLLT P++ RFGI RL +Y E L Sbjct: 131 EDFKIDIMIESGPNARSVEINLNPFTLVGATTRSGLLTAPMRARFGISSRLEYYSTELLS 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 I+ R + G+++T ++A EIA RSRGTPRIA LLRRVRDFA++ I EI+ + Sbjct: 191 GIILRSGSILGVSITTDSAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGKIDMEISKYS 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D G D +D + L I F GGPVG+ T++ +SE + IE++ EP++IQQGF Sbjct: 251 LKALNVDAFGLDDMDNKILLTIIDKFKGGPVGLTTLATAVSENAETIEEVYEPFLIQQGF 310 Query: 310 IQRTPRGRLLMPIAWQHLG 328 I RTPRGR + A++HLG Sbjct: 311 INRTPRGREVTDSAYKHLG 329 >gi|237737738|ref|ZP_04568219.1| holliday junction DNA helicase ruvB [Fusobacterium mortiferum ATCC 9817] gi|229419618|gb|EEO34665.1| holliday junction DNA helicase ruvB [Fusobacterium mortiferum ATCC 9817] Length = 333 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 167/306 (54%), Positives = 225/306 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++ E+ GQ + ++IEAAK R ++DH+L GPPGLGKTTLA VVA E+G N Sbjct: 20 LRPKSFREYIGQESLKDKMSIYIEAAKRRGSSVDHILLYGPPGLGKTTLAGVVANEMGAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ +AGDLAA+LT+LE+ D+LFIDEIHRL+ VEEILYPAMED +LD+++G+G Sbjct: 80 LKITSGPVLERAGDLAAILTSLEENDILFIDEIHRLNNTVEEILYPAMEDGELDIIIGKG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I L FTLI ATTR GLL++PL+DRFG+ R+ +Y E+L I+ RG K+ G+ Sbjct: 140 PSARSIRIELPNFTLIGATTRAGLLSSPLRDRFGVTHRMEYYTEEELAQIILRGGKILGV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V E A E+A RSRGTPRIA RLL+RVRD+ E+ IT+EI+ AL L +D +G D Sbjct: 200 KVEREGALELASRSRGTPRIANRLLKRVRDYCEIRGNGVITKEISMKALDILGVDSVGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD + I N+GGGPVGIET+S L E R +E++ EPY+++ G+I+RT RGR++ Sbjct: 260 DLDRDIINAIIDNYGGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGYIKRTNRGRVVTE 319 Query: 322 IAWQHL 327 A++H Sbjct: 320 KAYEHF 325 >gi|239628225|ref|ZP_04671256.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518371|gb|EEQ58237.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 335 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 170/323 (52%), Positives = 236/323 (73%), Gaps = 1/323 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ +V+ ED I + LRP+ L+++ GQ + S LKV+IEAA+ R EALDHVLF GPPGL Sbjct: 5 IITTDVTAEDERIETTLRPQCLKDYVGQEKLKSTLKVYIEAARNRNEALDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+G + + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLAGIIANEMGSSMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF +D+M+G+ +ARS++++L FTL+ ATTR GLLT PL+DRFG+ RL FY Sbjct: 125 YPAMEDFAIDIMLGKDSTARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVVQRLEFYTP 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++L TI+ A++ G+ + + A E+A RSRGTPR+A RLL+RVRDFA+V + ITRE+ Sbjct: 185 KELTTIILHSARVLGVEIEEAGALELARRSRGTPRLANRLLKRVRDFAQVKYDGVITREV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D AL + +DK+G DQ D L MI F GGPVG++T++A L E +E++ EPY++ Sbjct: 245 TDFALDIMDVDKLGLDQNDRNILLMIIEKFSGGPVGLDTLAAALGEDSGTLEEVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328 G I RTPRGR A++HLG Sbjct: 305 MNGLINRTPRGRTATESAYRHLG 327 >gi|260591888|ref|ZP_05857346.1| holliday junction DNA helicase RuvB [Prevotella veroralis F0319] gi|260536172|gb|EEX18789.1| holliday junction DNA helicase RuvB [Prevotella veroralis F0319] Length = 344 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 170/307 (55%), Positives = 225/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP ++F+GQ + NL+VF+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLKFDDFSGQQKVVENLRVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E ++ I++R A L + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPETIQRIIKRSAYLLKV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEAA EI+ RSRGTPRI LLRRVRDFA+V TIT EIA +L L ID+ G D Sbjct: 203 PIVDEAAVEISRRSRGTPRICNSLLRRVRDFAQVKGNGTITPEIAMMSLQSLNIDQYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR+ Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDAGTVEEVYEPFLIMEGFIKRTPRGRVATQ 322 Query: 322 IAWQHLG 328 +A+ HLG Sbjct: 323 LAYDHLG 329 >gi|160942100|ref|ZP_02089415.1| hypothetical protein CLOBOL_06988 [Clostridium bolteae ATCC BAA-613] gi|158434991|gb|EDP12758.1| hypothetical protein CLOBOL_06988 [Clostridium bolteae ATCC BAA-613] Length = 335 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 170/326 (52%), Positives = 234/326 (71%), Gaps = 1/326 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ V+ ED I + LRP+ L ++ GQ + S L ++IEAAK R E LDHVLF GPPGL Sbjct: 5 IITTEVTAEDERIETTLRPQCLRDYVGQEKIKSTLNIYIEAAKTRGEPLDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+G N + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLAGIIANEMGTNMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF +D+M+G+ +ARS++++L FTL+ ATTR GLLT PL+DRFG+ RL FY Sbjct: 125 YPAMEDFAIDIMLGKDSTARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVIQRLEFYTP 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+LK I+ A++ G+ + A E+A RSRGTPR+A RLL+RVRDFA+V + ITRE+ Sbjct: 185 EELKIIILHSARVLGVEIEAGGAMELARRSRGTPRLANRLLKRVRDFAQVKYDGVITREV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D AL + +DK+G DQ D L MI F GGPVG++T++A L E +E++ EPY++ Sbjct: 245 TDFALDIMDVDKLGLDQNDRNILLMIIEKFSGGPVGLDTLAAALGEDSGTLEEVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331 G I RTPRGR+ A +HLG+++ Sbjct: 305 MNGLINRTPRGRMATETACRHLGLEM 330 >gi|332886001|gb|EGK06245.1| Holliday junction ATP-dependent DNA helicase ruvB [Dysgonomonas mossii DSM 22836] Length = 340 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 172/319 (53%), Positives = 233/319 (73%), Gaps = 1/319 (0%) Query: 11 NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N+++ + + + LRP T + F GQ + NL+VF+ AAK R E+LDH L GPPGLGKTT Sbjct: 11 NINENEKEFENALRPLTFQSFRGQSKVVENLQVFVTAAKMRGESLDHTLLHGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 L+ ++A ELGV F+ TSGPV+ K GDLA LLT+LE DVLFIDEIHRLS +VEE LY AM Sbjct: 71 LSNIIANELGVGFKITSGPVLDKPGDLAGLLTSLEPNDVLFIDEIHRLSPVVEEYLYSAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D+M+ +GPSARSV+I L+ FTL+ ATTR GLLT+PL+ RFGI + L +Y+I+ L Sbjct: 131 EDYRIDIMIDKGPSARSVQIELNPFTLVGATTRSGLLTSPLRARFGINMHLEYYDIDTLV 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 I+ R A + + + ++A EIA RSRGTPRIA LLRRVRDFA+V + I ++IA A Sbjct: 191 HIILRSADILNVPASKDSAIEIASRSRGTPRIANALLRRVRDFAQVKGSGKIDKDIASYA 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L IDK G D++D + L ++ F GGPVGI TI+ L E IE++ EP++I++GF Sbjct: 251 LEALNIDKYGLDEIDNKILLILIDKFKGGPVGISTIATALGEDGGTIEEVYEPFLIKEGF 310 Query: 310 IQRTPRGRLLMPIAWQHLG 328 ++RTPRGR + +A++HLG Sbjct: 311 MKRTPRGREVTDLAYKHLG 329 >gi|255010257|ref|ZP_05282383.1| Holliday junction DNA helicase RuvB [Bacteroides fragilis 3_1_12] gi|313148052|ref|ZP_07810245.1| holliday junction DNA helicase ruvB [Bacteroides fragilis 3_1_12] gi|313136819|gb|EFR54179.1| holliday junction DNA helicase ruvB [Bacteroides fragilis 3_1_12] Length = 342 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 176/322 (54%), Positives = 235/322 (72%), Gaps = 4/322 (1%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L SR E+A LRP + E+F GQ + NL++F++AA+ R EALDHVL GPPGLG Sbjct: 12 LTSRERDFENA----LRPLSFEDFNGQDKVVDNLRIFVKAARLRGEALDHVLLHGPPGLG 67 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY Sbjct: 68 KTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLY 127 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMED+++D+M+ +GPSARS++I+LS FTL+ ATTR GLLT PL+ RFGI + L +Y+ + Sbjct: 128 SAMEDYRIDIMIDKGPSARSIQIDLSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDD 187 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 L I++R A + + + +AA EIA RSRGTPRIA LLRRVRDFA+V + +I EIA Sbjct: 188 ILSGIIRRSAGILDVPCSSQAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIA 247 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 + AL L IDK G D++D + L I F GGPVG+ TI+ L E IE++ EP++I+ Sbjct: 248 NYALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIK 307 Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328 +GF++RTPRGR + +A++HLG Sbjct: 308 EGFLKRTPRGREVTELAYKHLG 329 >gi|121998992|ref|YP_001003779.1| Holliday junction DNA helicase RuvB [Halorhodospira halophila SL1] gi|171769516|sp|A1WZ65|RUVB_HALHL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|121590397|gb|ABM62977.1| Holliday junction DNA helicase subunit RuvB [Halorhodospira halophila SL1] Length = 346 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 168/308 (54%), Positives = 226/308 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L+E+ GQ L++FI AA+ R E LDH L GPPGLGKTTLA ++A E+G + Sbjct: 27 LRPVSLDEYVGQTGVREQLEIFIRAARGRDEPLDHTLLFGPPGLGKTTLANIIATEMGAS 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R +SGPV+ + GDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMEDF++D+++GEG Sbjct: 87 LRQSSGPVLDRPGDLAAILTNLEPGDVLFIDEIHRLSSVVEEVLYPAMEDFRIDIVIGEG 146 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL +Y +++L IVQR A G+ Sbjct: 147 PAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLAYYPVDELTRIVQRSAGRLGV 206 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA R+RGTPR+A RLLRRVRDFAEV IT ++A A+ L +D+ G D Sbjct: 207 STEAHGAAEIARRARGTPRVANRLLRRVRDFAEVRADGRITEQVAADAMELLDVDRNGLD 266 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D R L + FGGGPVG++ ++ + E R +ED++EPY+IQ+G++ RTPRGR+ Sbjct: 267 EQDRRLLEAVVHKFGGGPVGLDNLATAIGEERGTLEDVVEPYLIQEGYLMRTPRGRVATE 326 Query: 322 IAWQHLGI 329 A+ LG+ Sbjct: 327 HAYTLLGV 334 >gi|160942947|ref|ZP_02090186.1| hypothetical protein FAEPRAM212_00424 [Faecalibacterium prausnitzii M21/2] gi|158445848|gb|EDP22851.1| hypothetical protein FAEPRAM212_00424 [Faecalibacterium prausnitzii M21/2] Length = 351 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 169/318 (53%), Positives = 228/318 (71%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D + + LRP+ LE++ GQ +A NLK+++EAAK R E +DH+L GPPGLGKTTLA ++A Sbjct: 21 DNEENNLRPQHLEDYIGQEKAKQNLKIYLEAAKRRGEPVDHILLYGPPGLGKTTLAGIIA 80 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 E+GV R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS VEE+LYPA+ED+ LD Sbjct: 81 NEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLYPALEDYALD 140 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L Y ++L I+ R Sbjct: 141 IMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPDELSRIIMRS 200 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A + +T E A E+A SRGTPR+A R L+R+RDFA V I +++A L R+ + Sbjct: 201 AGILDQPITPEGAYELAKCSRGTPRVANRFLKRIRDFATVLGDGIIDQDVALLGLKRMDV 260 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D +G D+LD L I + GGPVG+ET++A L E +EDL EPY++Q GF+ RTPR Sbjct: 261 DALGLDELDRSLLRAIIEMYNGGPVGLETLAAALGEEAVTLEDLCEPYLMQMGFLTRTPR 320 Query: 316 GRLLMPIAWQHLGIDIPH 333 GR +A++HLG+ P Sbjct: 321 GRCATRLAYEHLGMKAPE 338 >gi|315651979|ref|ZP_07904981.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium saburreum DSM 3986] gi|315485808|gb|EFU76188.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium saburreum DSM 3986] Length = 332 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 170/326 (52%), Positives = 232/326 (71%), Gaps = 1/326 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S +++ED I LRP+ L E+ GQ + NLKV+I+AAK R E+LDHVLF GPPGL Sbjct: 5 IISTEITKEDKQIEKSLRPQFLNEYIGQEKIRKNLKVYIDAAKFRNESLDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL ++A E+G N + TSGP I K GD+AA+L NL + DVLF+DEIHRL+ VEE+L Sbjct: 65 GKTTLCNIIANEMGTNLKVTSGPAIEKPGDMAAILNNLNEGDVLFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF +D+++G+ ARS++++L +FTL+ ATTR GLLT PL+DRFG+ +L FY Sbjct: 125 YPAMEDFVIDIVIGKDAGARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVQKLEFYNT 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++LK IV+R A + G+ + + A EIA RSRGTPR+A RLL+RVRDFA+V + I + + Sbjct: 185 DELKEIVRRSATVLGVEIDNNGAIEIARRSRGTPRLANRLLKRVRDFAQVKYNGIIDKGV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AD AL L +DK+G D D L I FGGGPVG+ T+SA + E +E++ EPY++ Sbjct: 245 ADFALDTLDVDKLGLDNNDRMILLTIIEKFGGGPVGLNTLSAAIGEDAGTLEEVYEPYLL 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331 G I RTP GR+ A+ HLGI++ Sbjct: 305 MNGLINRTPGGRVATENAYIHLGIEM 330 >gi|320450980|ref|YP_004203076.1| holliday junction DNA helicase RuvB [Thermus scotoductus SA-01] gi|320151149|gb|ADW22527.1| holliday junction DNA helicase RuvB [Thermus scotoductus SA-01] Length = 323 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 176/312 (56%), Positives = 232/312 (74%), Gaps = 1/312 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL+E+ GQ L+V++EAAKAR E L+H+L GPPGLGKTTLA V+A ELGVN Sbjct: 7 LRPRTLDEYIGQERLKKKLRVYLEAAKARGEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 66 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS EE LYPAMEDF++D+++G+ Sbjct: 67 LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFKMDIVIGQ 126 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR++++ L RFTLI ATTR GL+T PL+ RFGI L +Y +E+L V+R A+L G Sbjct: 127 GPAARTIRLELPRFTLIGATTRPGLITAPLRSRFGIVEHLEYYSLEELAEGVRRDARLLG 186 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 +A+T+EAA EIA RSRGT R+A RL RRVRDFA+VA +TIT+E AL L +D++G Sbjct: 187 VAITEEAALEIAKRSRGTMRVAKRLFRRVRDFAQVAGEETITQERTLEALNALGLDELGL 246 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 ++ D L + FGGGPVG++T++ +SE +E++ EPY+IQQG ++RTPRGR+ Sbjct: 247 EKRDREILETLILRFGGGPVGLQTLATAVSEDPGTLEEVHEPYLIQQGLLKRTPRGRVAT 306 Query: 321 PIAWQHLGIDIP 332 A++HLG P Sbjct: 307 ERAYRHLGYPPP 318 >gi|303233191|ref|ZP_07319864.1| Holliday junction DNA helicase RuvB [Atopobium vaginae PB189-T1-4] gi|302480776|gb|EFL43863.1| Holliday junction DNA helicase RuvB [Atopobium vaginae PB189-T1-4] Length = 369 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 171/330 (51%), Positives = 235/330 (71%), Gaps = 5/330 (1%) Query: 8 LSRNV----SQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 L RNV + ED D+ LRP TL ++ GQ N++V I AAK R E LDHVLF GP Sbjct: 37 LPRNVDPTCTDEDIDVERSLRPETLSDYCGQTRVRENMRVLISAAKERNETLDHVLFSGP 96 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA +VA E+ ++TSGP I + GDLAALLTNLE+ DVLF+DEIHRL+ +E Sbjct: 97 PGLGKTTLASIVAHEMNARLKTTSGPAITRTGDLAALLTNLEEGDVLFVDEIHRLNHQIE 156 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LYPAMEDF LD+++G+GP+ARS++++L FTLI ATTR GLL+ PL+DRFGI +L++ Sbjct: 157 EVLYPAMEDFVLDIVIGKGPAARSIRLDLPHFTLIGATTRTGLLSGPLRDRFGISYQLDY 216 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y +E+L IV R A + + + + A EIA RSRGTPR+A RLL+RVRD+A+V A TI+ Sbjct: 217 YSVEELAAIVTRSAGILQVDIDRQGALEIASRSRGTPRLANRLLKRVRDYAQVRAAGTIS 276 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 ++A AL ID++G D +D + L + + F G PVG+ T+S+ + E +ED+ EP Sbjct: 277 WDVASEALKFFEIDELGLDWMDKKILDALCKTFRGRPVGLTTLSSAVGEDPATLEDVYEP 336 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Y++QQG + RTP+GR +A++H+G+ P Sbjct: 337 YLLQQGLLVRTPQGRQATSMAFEHVGLPAP 366 >gi|255037439|ref|YP_003088060.1| Holliday junction DNA helicase RuvB [Dyadobacter fermentans DSM 18053] gi|254950195|gb|ACT94895.1| Holliday junction DNA helicase RuvB [Dyadobacter fermentans DSM 18053] Length = 341 Score = 349 bits (895), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 175/325 (53%), Positives = 235/325 (72%), Gaps = 1/325 (0%) Query: 11 NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N+S D DI LRP + E+FTGQ + NL++F++AA+ R +ALDHVL GPPGLGKTT Sbjct: 12 NLSNTDKDIERALRPLSFEDFTGQDKILENLRIFVQAARQRGDALDHVLLHGPPGLGKTT 71 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 L+ ++A ELG + TSGPV+ K DLA LLTNL++ DVLFIDEIHRL+ IVEE LY AM Sbjct: 72 LSNIIANELGSGIKITSGPVLDKPSDLAGLLTNLQEHDVLFIDEIHRLNPIVEEYLYSAM 131 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D+M+ GP+ARS++I L+ FTLI ATTR G+LT+PL+ RFGI RL +Y+ + L Sbjct: 132 EDYKIDIMLDSGPNARSIQIGLNPFTLIGATTRAGMLTSPLRARFGINARLEYYDAQLLS 191 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 +I++R A + G + ++AA EIA RSRGTPRIA LLRR RDFA+V IT IA+ A Sbjct: 192 SILKRSASILGTPLEEDAAFEIARRSRGTPRIANNLLRRTRDFAQVKGNGRITVAIAEMA 251 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D+ G D++D R L+ I + F GGPVG+ TI+ E D IE++ EP++IQ+G+ Sbjct: 252 LQALDVDQNGLDEMDNRILSTIIQKFKGGPVGLSTIATACGEEADTIEEVYEPFLIQEGY 311 Query: 310 IQRTPRGRLLMPIAWQHLGIDIPHR 334 I+RT RGR + A++HLGI HR Sbjct: 312 IKRTSRGREVTEKAFRHLGILPRHR 336 >gi|331269239|ref|YP_004395731.1| Holliday junction DNA helicase RuvB [Clostridium botulinum BKT015925] gi|329125789|gb|AEB75734.1| Holliday junction DNA helicase RuvB [Clostridium botulinum BKT015925] Length = 337 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 177/331 (53%), Positives = 237/331 (71%), Gaps = 3/331 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++S + +ED D+ LRP L E+ GQ + L +FIEAAK R EALDHVL Sbjct: 1 MEDR--IVSASYKREDFDVEHSLRPEKLSEYIGQSKVKEKLNIFIEAAKMRQEALDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A+E+G + TSGP I +AGD+AA+LT+L D DVLFIDEIHRL+ Sbjct: 59 YGPPGLGKTTLANIIAKEMGGTLKVTSGPAIERAGDMAAILTSLNDYDVLFIDEIHRLNR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEI+YPAMED LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+ Sbjct: 119 TVEEIMYPAMEDNVLDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVLSA 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + FY ++LK IV R +K+ G+ T++AA EIA RSRGTPRIA R+L+RVRD+ +V Sbjct: 179 MEFYNEDELKEIVLRSSKILGVVTTEDAAFEIARRSRGTPRIANRILKRVRDYCDVKGNG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I IA +AL L ID GFD +D + L I NF GGPVG+ET++ + E D I+D+ Sbjct: 239 IIDINIAQSALELLEIDGEGFDNIDNKILEAIIDNFKGGPVGLETLAYFVGEELDTIQDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY++Q+GF+ R PRGR A++HL D Sbjct: 299 YEPYLLQKGFVIRMPRGRKATEKAYRHLKRD 329 >gi|315223634|ref|ZP_07865488.1| crossover junction ATP-dependent DNA helicase RuvB [Capnocytophaga ochracea F0287] gi|314946415|gb|EFS98410.1| crossover junction ATP-dependent DNA helicase RuvB [Capnocytophaga ochracea F0287] Length = 341 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 177/325 (54%), Positives = 230/325 (70%), Gaps = 1/325 (0%) Query: 11 NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N S ++ DI LRP + ++F GQ NLKVF++AA R EALDH LF GPPGLGKTT Sbjct: 11 NYSAQELDIERALRPLSFDDFAGQEAVLENLKVFVKAANMRHEALDHTLFHGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A ELGV + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS +VEE LY AM Sbjct: 71 LAHILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPVVEEYLYSAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D+M+ GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI RL +Y E L Sbjct: 131 EDYKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLA 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IVQR A + + ++ EAA E+A RSRGTPRIA LLRR+RDFA++ I I Sbjct: 191 DIVQRSASILKVPISMEAAIELASRSRGTPRIANALLRRIRDFAQIKGNGEINIAITRFG 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D G D++D + L+ + F GGPVGI T++ +SE + IE++ EP++IQ+GF Sbjct: 251 LKALNVDAHGLDEMDNKILSTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQEGF 310 Query: 310 IQRTPRGRLLMPIAWQHLGIDIPHR 334 I RTPRGR + +A++HLG P R Sbjct: 311 IVRTPRGREVTDLAYKHLGRVNPTR 335 >gi|120434537|ref|YP_860232.1| Holliday junction DNA helicase RuvB [Gramella forsetii KT0803] gi|171460822|sp|A0LXR1|RUVB_GRAFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|117576687|emb|CAL65156.1| Holliday junction ATP-dependent DNA helicase RuvB [Gramella forsetii KT0803] Length = 343 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 176/319 (55%), Positives = 228/319 (71%), Gaps = 1/319 (0%) Query: 11 NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N S E+ D+ LRP + ++F GQ + NL++F++AA R EALDH LF GPPGLGKTT Sbjct: 12 NFSPEEFDVERALRPLSFDDFAGQEQVLENLQIFVQAANLRGEALDHTLFHGPPGLGKTT 71 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A EL V + TSGPV+ K GDLA LLTNL++RD+LFIDEIHRLS IVEE LY AM Sbjct: 72 LAHILANELNVGIKITSGPVLDKPGDLAGLLTNLDERDILFIDEIHRLSPIVEEYLYSAM 131 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D+M+ GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI RL +Y E L Sbjct: 132 EDYRIDIMIETGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGISSRLQYYSTELLS 191 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IV+R + + + +T +AA EIA RSRGTPRIA LLRRVRDFA++ I EIA Sbjct: 192 GIVERSSDILKVPITQDAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGKIDIEIAKFG 251 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D G D++D + L I F GGPVGI T++ +SE + IE++ EP++IQQGF Sbjct: 252 LKALNVDAHGLDEMDNKILATIIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQGF 311 Query: 310 IQRTPRGRLLMPIAWQHLG 328 I RTPRGR + A++HLG Sbjct: 312 IYRTPRGREVTEHAYRHLG 330 >gi|256545113|ref|ZP_05472479.1| Holliday junction DNA helicase RuvB [Anaerococcus vaginalis ATCC 51170] gi|256399154|gb|EEU12765.1| Holliday junction DNA helicase RuvB [Anaerococcus vaginalis ATCC 51170] Length = 336 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 168/308 (54%), Positives = 226/308 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+++ GQ +A LK+FIE++K R EALDHVL GPPGLGKTTL+ ++A ELGVN Sbjct: 24 IRPKWLKDYIGQDKAKEKLKIFIESSKKRQEALDHVLLQGPPGLGKTTLSNIIANELGVN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I + DLA++LTNL+ DVLFIDEIHR++ VEEILYPAMEDF LD++VG+G Sbjct: 84 IRITSGPAIERPSDLASILTNLDKGDVLFIDEIHRINRSVEEILYPAMEDFALDIIVGKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+S++I+L +FTL+ ATTR G+L+ PL+DRFG+ + LN Y+ +DL IV+R A + + Sbjct: 144 PNAQSIRIDLEKFTLVGATTRAGMLSAPLRDRFGVLLSLNLYDTKDLTKIVKRSADILEI 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+ A EIA RSRGTPRIA RLLRRVRD+A V + I E + L L +D MG D Sbjct: 204 PIEDKGAFEIARRSRGTPRIANRLLRRVRDYAIVKKDEIIDYETSCEGLELLEVDPMGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + + NF GGPVGI+TI+A IED+ EPY++Q GF+ RTPRGR+L Sbjct: 264 NMDKKIVLTMYENFSGGPVGIDTIAASTGIENITIEDVYEPYLLQIGFLTRTPRGRILTR 323 Query: 322 IAWQHLGI 329 A++H G+ Sbjct: 324 KAYEHYGL 331 >gi|154490080|ref|ZP_02030341.1| hypothetical protein PARMER_00309 [Parabacteroides merdae ATCC 43184] gi|154089229|gb|EDN88273.1| hypothetical protein PARMER_00309 [Parabacteroides merdae ATCC 43184] Length = 361 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 173/307 (56%), Positives = 225/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + +F+GQ + NLK+F+ AA+ R EALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 43 LRPLSFHDFSGQAKVVENLKIFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELGVG 102 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS IVEE LY AMED+++D+M+ +G Sbjct: 103 FKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIMIDKG 162 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT+PL+ RFGI + L +YE+E L IV R A + + Sbjct: 163 PSARSIQIDLAPFTLVGATTRSGLLTSPLRARFGINMHLEYYEMETLTKIVLRSADILNV 222 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 AA EIA RSRGTPRIA LLRRVRDFA+V + I + I+ AL L ID+ G D Sbjct: 223 KCELSAAREIASRSRGTPRIANALLRRVRDFAQVKGSGEIDKAISCYALEALNIDRYGLD 282 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + LT I F GGPVG+ TI+ L E +E++ EP++I++GFI+RTPRGR + Sbjct: 283 QIDNKLLTTIIDKFNGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREVTE 342 Query: 322 IAWQHLG 328 +A+ HLG Sbjct: 343 LAYTHLG 349 >gi|297616929|ref|YP_003702088.1| Holliday junction DNA helicase RuvB [Syntrophothermus lipocalidus DSM 12680] gi|297144766|gb|ADI01523.1| Holliday junction DNA helicase RuvB [Syntrophothermus lipocalidus DSM 12680] Length = 346 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 177/323 (54%), Positives = 238/323 (73%), Gaps = 1/323 (0%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 G + + + + +ISL RP L E+ GQ +A N+ VFI++A R E LDHVL GPPGL Sbjct: 8 GRVEEDFIETNIEISL-RPSRLAEYIGQEKAKENIAVFIDSALQRKEPLDHVLLSGPPGL 66 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA V+A E+G R TSGP + + GDLAA+LTNLE +VLFIDEIHRL+ +VEEIL Sbjct: 67 GKTTLASVIANEMGKPIRKTSGPALERPGDLAAILTNLEPGEVLFIDEIHRLNRVVEEIL 126 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF +D+++G+GPSAR+++++L FTLI ATTR GLL++PL+DRFGI RL+FYE Sbjct: 127 YPAMEDFAIDIVIGKGPSARTLRLDLPPFTLIGATTRPGLLSSPLRDRFGILCRLDFYEE 186 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++L I+ R A L G+++ + A EIA R+RGTPRIA RLL+RVRDFA V TI EI Sbjct: 187 DELILIITRSAALLGISIDEGGAREIARRARGTPRIANRLLKRVRDFAVVQSGGTIDAEI 246 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL +L ID+ G D++D L +I F GGPVG++T++A +SE D + D+ EPY++ Sbjct: 247 AAMALSKLEIDERGLDRIDRTILDIIISKFNGGPVGLDTLAAAVSEEPDTLLDVYEPYLL 306 Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328 + GFIQR+PRGR++ P ++HLG Sbjct: 307 KIGFIQRSPRGRMVTPSGYRHLG 329 >gi|262341251|ref|YP_003284106.1| Holliday junction DNA helicase RuvB [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272588|gb|ACY40496.1| Holliday junction DNA helicase RuvB [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 322 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 171/313 (54%), Positives = 228/313 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 L P+T+++F GQ + NLK+FI+AAK R +ALDH+LF GPPGLGKTTLA +VA EL VN Sbjct: 9 LNPKTIQDFVGQNDILENLKIFIQAAKKRKDALDHILFHGPPGLGKTTLAHIVANELHVN 68 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSG V+ K GDLA LL +L+ DV+FIDEIHRLS IVEE LY AME++++D+++ G Sbjct: 69 ITVTSGSVLDKPGDLAGLLIHLKLNDVIFIDEIHRLSPIVEEYLYSAMENYKIDIIIDSG 128 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +A+SV+I+LS FTLI ATTR GLLT P++ RFGI RL++YE + LK IV R AKL + Sbjct: 129 SNAKSVQIDLSPFTLIGATTRSGLLTAPMRSRFGINFRLSYYEKKFLKNIVNRSAKLLNI 188 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T++A+ EIA RSRGTPRIA LLRR+RDFA++ TI I + L L +DK G D Sbjct: 189 PITEKASYEIANRSRGTPRIANALLRRIRDFAQIKGNGTIDLNICNLGLQALNVDKNGLD 248 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L I +F GGPVGI TI+ +SE D IE++ EP++I++G++ RTPRGR Sbjct: 249 EMDNRILLSIIDHFKGGPVGINTIATAVSENSDTIEEVYEPFLIKEGYLIRTPRGRKATK 308 Query: 322 IAWQHLGIDIPHR 334 +A+QHL D+ + Sbjct: 309 LAYQHLKRDLKKK 321 >gi|56963320|ref|YP_175051.1| Holliday junction DNA helicase RuvB [Bacillus clausii KSM-K16] gi|68715275|sp|Q5WHR5|RUVB_BACSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|56909563|dbj|BAD64090.1| holliday junction DNA helicase RuvB [Bacillus clausii KSM-K16] Length = 333 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 172/309 (55%), Positives = 226/309 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ NL VF+EAAK R EALDHVL GPPGLGKTTLA ++A E+G Sbjct: 21 LRPKRLADYIGQETVKHNLAVFMEAAKMREEALDHVLLYGPPGLGKTTLAAIIAAEMGGE 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP I ++GDLAA+LT LE DVLFIDEIHRL+ VEE+LYPAMEDF LD+++G+G Sbjct: 81 LRTTSGPAIERSGDLAAILTALEPGDVLFIDEIHRLNRTVEEVLYPAMEDFCLDIVIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+++L FTL+ ATTR G+L++PL+DRFG+ RL +Y+ E+L IV+R A + Sbjct: 141 PTARSVRLDLPPFTLVGATTRAGMLSSPLRDRFGVMARLEYYKPEELAQIVERSATVFQA 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + AA E+A RSRGTPRIA RLLRRVRDFA+V I+ E A +AL +L +D +G D Sbjct: 201 TLEPSAALELARRSRGTPRIANRLLRRVRDFAQVGGEAAISLERACSALEQLHVDPLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + F GGPVG+ETI+A + E IE++ EPY++Q GFIQRTPRGR+ P Sbjct: 261 HIDDKLLKGMIEKFNGGPVGLETIAATIGEEAATIEEVYEPYLLQIGFIQRTPRGRIATP 320 Query: 322 IAWQHLGID 330 + H G++ Sbjct: 321 ACYAHYGVE 329 >gi|189464949|ref|ZP_03013734.1| hypothetical protein BACINT_01293 [Bacteroides intestinalis DSM 17393] gi|189437223|gb|EDV06208.1| hypothetical protein BACINT_01293 [Bacteroides intestinalis DSM 17393] Length = 343 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 175/322 (54%), Positives = 235/322 (72%), Gaps = 4/322 (1%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L SR E+A LRP + E+F+GQ + NL++F++AA+ R EALDHVL GPPGLG Sbjct: 13 LTSRERDFENA----LRPLSFEDFSGQDKVVDNLRIFVKAARLRGEALDHVLLHGPPGLG 68 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY Sbjct: 69 KTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLY 128 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMED+++D+M+ +GPSARS++I+LS FTL+ ATTR GLLT PL+ RFGI + L +Y+ + Sbjct: 129 SAMEDYRIDIMIDKGPSARSIQIDLSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDD 188 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 L I++R A + + + AA EIA RSRGTPRIA LLRRVRDFA+V + +I EIA Sbjct: 189 VLSGIIRRSAGILNVPCSTRAASEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIA 248 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 + AL L IDK G D++D + L I F GGPVG+ TI+ L E +E++ EP++I+ Sbjct: 249 NFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTVEEVYEPFLIK 308 Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328 +GF++RTPRGR + +A++HLG Sbjct: 309 EGFLKRTPRGREVTELAYKHLG 330 >gi|146317710|ref|YP_001197422.1| Holliday junction DNA helicase RuvB [Streptococcus suis 05ZYH33] gi|146319898|ref|YP_001199609.1| Holliday junction DNA helicase RuvB [Streptococcus suis 98HAH33] gi|253750965|ref|YP_003024106.1| Holliday junction DNA helicase, subunit B [Streptococcus suis SC84] gi|253752865|ref|YP_003026005.1| Holliday junction DNA helicase, subunit B [Streptococcus suis P1/7] gi|253754690|ref|YP_003027830.1| Holliday junction DNA helicase, subunit B [Streptococcus suis BM407] gi|172045570|sp|A4VSD3|RUVB_STRSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|172045585|sp|A4VYM0|RUVB_STRS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|145688516|gb|ABP89022.1| Holliday junction resolvasome, helicase subunit [Streptococcus suis 05ZYH33] gi|145690704|gb|ABP91209.1| Holliday junction resolvasome, helicase subunit [Streptococcus suis 98HAH33] gi|251815254|emb|CAZ50819.1| Holliday junction DNA helicase, subunit B [Streptococcus suis SC84] gi|251817154|emb|CAZ54875.1| Holliday junction DNA helicase, subunit B [Streptococcus suis BM407] gi|251819110|emb|CAR44174.1| Holliday junction DNA helicase, subunit B [Streptococcus suis P1/7] gi|292557509|gb|ADE30510.1| Holliday junction DNA helicase RuvB [Streptococcus suis GZ1] gi|319757217|gb|ADV69159.1| Holliday junction DNA helicase RuvB [Streptococcus suis JS14] Length = 333 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 172/307 (56%), Positives = 220/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 21 LRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL ALL +LE DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G Sbjct: 81 IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTLI ATTR G+L+NPL+ RFGI + +YE+ DL IV+R A + + Sbjct: 141 EASRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDM 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRDFA++ I I D AL L +D+ G D Sbjct: 201 EITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLIDDSITDKALTMLDVDREGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQQGF+ RT GR+ Sbjct: 261 YVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA 320 Query: 322 IAWQHLG 328 A++HLG Sbjct: 321 KAYEHLG 327 >gi|218258529|ref|ZP_03474885.1| hypothetical protein PRABACTJOHN_00540 [Parabacteroides johnsonii DSM 18315] gi|218225405|gb|EEC98055.1| hypothetical protein PRABACTJOHN_00540 [Parabacteroides johnsonii DSM 18315] Length = 361 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 173/307 (56%), Positives = 225/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + +F+GQ + NLK+F+ AA+ R EALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 43 LRPLSFHDFSGQAKVVENLKIFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELGVG 102 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS IVEE LY AMED+++D+M+ +G Sbjct: 103 FKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIMIDKG 162 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT+PL+ RFGI + L +YE+E L IV R A + + Sbjct: 163 PSARSIQIDLAPFTLVGATTRSGLLTSPLRARFGINMHLEYYEMETLTKIVLRSADILNV 222 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 AA EIA RSRGTPRIA LLRRVRDFA+V + I + I+ AL L ID+ G D Sbjct: 223 KCELSAAREIASRSRGTPRIANALLRRVRDFAQVKGSGEIDKAISCYALEALNIDRYGLD 282 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + LT I F GGPVG+ TI+ L E +E++ EP++I++GFI+RTPRGR + Sbjct: 283 QIDNKLLTTIIDKFNGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREVTE 342 Query: 322 IAWQHLG 328 +A+ HLG Sbjct: 343 LAYTHLG 349 >gi|223044105|ref|ZP_03614144.1| holliday junction DNA helicase RuvB [Staphylococcus capitis SK14] gi|222442499|gb|EEE48605.1| holliday junction DNA helicase RuvB [Staphylococcus capitis SK14] Length = 334 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 170/328 (51%), Positives = 230/328 (70%), Gaps = 2/328 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD+ ++ + ED+D L LRP L+++ GQ SNL+VFI+AAK R E LDHVL Sbjct: 1 MDKR-MVDQQFHNEDSDFELSLRPTKLKQYIGQTSIKSNLEVFIKAAKLREEPLDHVLLF 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS + Sbjct: 60 GPPGLGKTTLSNIIANEMEVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +RL Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y DLK I+ R A + G + +E+A E+A RSRGTPR+A RLL+RVRDF +V Sbjct: 180 EYYNENDLKEIITRTADVLGTGIDEESALELARRSRGTPRVANRLLKRVRDFQQVNEDDQ 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I E AL L +DK G D +D + + I + GGPVG++TI+ + E R IED+ Sbjct: 240 IYIETTKRALQLLQVDKEGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERITIEDVY 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EP++IQ+GF++RTPRGR P A++H Sbjct: 300 EPFLIQKGFLERTPRGRKATPFAYEHFN 327 >gi|307564788|ref|ZP_07627316.1| Holliday junction DNA helicase RuvB [Prevotella amnii CRIS 21A-A] gi|307346510|gb|EFN91819.1| Holliday junction DNA helicase RuvB [Prevotella amnii CRIS 21A-A] Length = 345 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 171/307 (55%), Positives = 222/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +F+GQ + NL VF+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLKFSDFSGQDKVVENLSVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I L+ FTLI ATTR GLLT PL+ RFGI + L +Y E ++ I++R A L + Sbjct: 143 PSARSIQIELNPFTLIGATTRSGLLTAPLRARFGINMHLEYYNAETIQRIIKRSAALLKV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEAA EIA+RSRGTPRI LLRRVRDFA+V TIT IA +L L ID+ G D Sbjct: 203 PIIDEAAEEIALRSRGTPRICNSLLRRVRDFAQVKGNGTITPNIATMSLQALNIDQYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I FGGGPVG+ TI+ + E +E++ EP++I +GFI+RT RGR+ Sbjct: 263 EIDNKILLTIIDKFGGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTTRGRVATQ 322 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 323 LAYEHLG 329 >gi|223932360|ref|ZP_03624363.1| Holliday junction DNA helicase RuvB [Streptococcus suis 89/1591] gi|223899041|gb|EEF65399.1| Holliday junction DNA helicase RuvB [Streptococcus suis 89/1591] Length = 333 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 172/307 (56%), Positives = 220/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 21 LRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL ALL +LE DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G Sbjct: 81 IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTLI ATTR G+L+NPL+ RFGI + +YE+ DL IV+R A + + Sbjct: 141 EASRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDM 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRDFA++ I I D AL L +D+ G D Sbjct: 201 EITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLIDDNITDKALTMLDVDREGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQQGF+ RT GR+ Sbjct: 261 YVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA 320 Query: 322 IAWQHLG 328 A++HLG Sbjct: 321 KAYEHLG 327 >gi|160882933|ref|ZP_02063936.1| hypothetical protein BACOVA_00895 [Bacteroides ovatus ATCC 8483] gi|237720595|ref|ZP_04551076.1| holliday junction DNA helicase ruvB [Bacteroides sp. 2_2_4] gi|260172636|ref|ZP_05759048.1| Holliday junction DNA helicase RuvB [Bacteroides sp. D2] gi|293373382|ref|ZP_06619738.1| Holliday junction DNA helicase RuvB [Bacteroides ovatus SD CMC 3f] gi|299145305|ref|ZP_07038373.1| holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_23] gi|315920926|ref|ZP_07917166.1| holliday junction DNA helicase ruvB [Bacteroides sp. D2] gi|156111616|gb|EDO13361.1| hypothetical protein BACOVA_00895 [Bacteroides ovatus ATCC 8483] gi|229450346|gb|EEO56137.1| holliday junction DNA helicase ruvB [Bacteroides sp. 2_2_4] gi|292631668|gb|EFF50290.1| Holliday junction DNA helicase RuvB [Bacteroides ovatus SD CMC 3f] gi|298515796|gb|EFI39677.1| holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_23] gi|313694801|gb|EFS31636.1| holliday junction DNA helicase ruvB [Bacteroides sp. D2] Length = 343 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 171/307 (55%), Positives = 228/307 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + E+F+GQ + NL++F++AA+ R EALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 24 LRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIANELGVG 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 84 FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L I++R A + + Sbjct: 144 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDILSNIIRRSASILDV 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + AA EIA RSRGTPRIA LLRRVRDFA+V + +I EIA AL L IDK G D Sbjct: 204 PCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIAQFALEALNIDKYGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVGI TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 264 EIDNKILCTIIDKFKGGPVGITTIATALGEDAGTIEEVYEPFLIKEGFMKRTPRGREVTE 323 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 324 LAYKHLG 330 >gi|291522296|emb|CBK80589.1| Holliday junction DNA helicase, RuvB subunit [Coprococcus catus GD/7] Length = 333 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 168/324 (51%), Positives = 236/324 (72%), Gaps = 1/324 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +++ ++ED I + LRP+ L+++ GQ + L ++IEAA+ R E LDHVLF GPPGL Sbjct: 5 IITTEFAEEDVKIENHLRPQLLKDYIGQQKVKETLSIYIEAARQREEPLDHVLFYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+GV + TSGP I K G++AA+L NL + DVLFIDEIHRL+ VEE+L Sbjct: 65 GKTTLAGIIANEMGVKMKVTSGPAIEKPGEIAAILNNLSEGDVLFIDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF +D+++G+G +ARS++++L +FTL+ ATTR GLLT PL+DRFG+ RL FY Sbjct: 125 YPAMEDFAIDIVIGKGAAARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVSRLEFYST 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +DL TI++R A++ + + + A E+A RSRGTPR+A RLL+RVRD+A+V H IT ++ Sbjct: 185 QDLMTIIRRSAEVLHVKIDERGAEELARRSRGTPRLANRLLKRVRDYAQVCHDGVITLQV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A+ AL L +DK G DQ D L + F GGPVG++T++A L E +E++ EPY+I Sbjct: 245 ANEALDLLDVDKYGLDQSDRNILLTMMNKFRGGPVGLDTLAAALGEDSGTLEEVYEPYLI 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 + GFIQRTPRGR++ +A H GI Sbjct: 305 KNGFIQRTPRGRVVTELARAHCGI 328 >gi|302023148|ref|ZP_07248359.1| Holliday junction DNA helicase RuvB [Streptococcus suis 05HAS68] Length = 323 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 172/307 (56%), Positives = 220/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 11 LRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL ALL +LE DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G Sbjct: 71 IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTLI ATTR G+L+NPL+ RFGI + +YE+ DL IV+R A + + Sbjct: 131 EASRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDM 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRDFA++ I I D AL L +D+ G D Sbjct: 191 EITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLIDDNITDKALTMLDVDREGLD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQQGF+ RT GR+ Sbjct: 251 YVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA 310 Query: 322 IAWQHLG 328 A++HLG Sbjct: 311 KAYEHLG 317 >gi|323350894|ref|ZP_08086552.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis VMC66] gi|322122876|gb|EFX94582.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis VMC66] gi|324992688|gb|EGC24609.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK405] Length = 332 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 169/309 (54%), Positives = 227/309 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI K+GDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL IV+R A++ + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+T EAA E+A+RSRGTPRIA RLL+RVRD+A++ I +I D AL L +D+ G D Sbjct: 200 AITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|94971570|ref|YP_593618.1| Holliday junction DNA helicase RuvB [Candidatus Koribacter versatilis Ellin345] gi|123381145|sp|Q1IHV6|RUVB_ACIBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|94553620|gb|ABF43544.1| Holliday junction DNA helicase subunit RuvB [Candidatus Koribacter versatilis Ellin345] Length = 360 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 172/332 (51%), Positives = 237/332 (71%), Gaps = 1/332 (0%) Query: 4 REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 RE L+S ++D+ L LRP+ L EF GQ + NL V IEAA++R EALDHVL GP Sbjct: 24 RERLVSAIPVEDDSSFELKLRPQWLREFIGQPKVKENLAVAIEAARSRGEALDHVLLYGP 83 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A E+ F+ TSGP + GDL A+LTN+ D+ VLFIDE+HRL +E Sbjct: 84 PGLGKTTLANIIANEMQAQFQQTSGPTLQIKGDLTAILTNVRDKQVLFIDEVHRLQPALE 143 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY A+ED++LD+++G+GPSAR+ I+++ FTL+AATTR GLL+ PL+ RFGI +RL F Sbjct: 144 ELLYSAVEDYKLDIIIGQGPSARTHTIDVAPFTLVAATTRAGLLSAPLRSRFGIVLRLEF 203 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y EDLK I++R A++ + + + A EIA R RGTPRIA RLLRRVRD+A+V A I Sbjct: 204 YTTEDLKIILKRSAEILNVEIDEGGAAEIATRCRGTPRIANRLLRRVRDYAQVRGAGKID 263 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 RE A AL L +D+ GFD++D R + I + GGPVG+ T++A L+E DAIE++ EP Sbjct: 264 RETAQKALEMLEVDQHGFDEVDRRLMLTIIEKYQGGPVGLNTLAASLAEETDAIEEIYEP 323 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++IQ GF+ RTPRGR+ +A+++ + P + Sbjct: 324 FLIQLGFLDRTPRGRVATHLAYEYFKMKPPKK 355 >gi|213963690|ref|ZP_03391941.1| holliday junction DNA helicase RuvB [Capnocytophaga sputigena Capno] gi|213953685|gb|EEB65016.1| holliday junction DNA helicase RuvB [Capnocytophaga sputigena Capno] Length = 341 Score = 348 bits (894), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 175/319 (54%), Positives = 228/319 (71%), Gaps = 1/319 (0%) Query: 11 NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N S ++ DI LRP + ++F GQ NLKVF++AA R EALDH LF GPPGLGKTT Sbjct: 11 NYSAQELDIERALRPLSFDDFAGQEAVLENLKVFVKAANMRHEALDHTLFHGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A ELGV + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS +VEE LY AM Sbjct: 71 LAHILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPVVEEYLYSAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D+M+ GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI RL +Y E L Sbjct: 131 EDYKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLA 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IVQR A + + ++ EAA E+A RSRGTPRIA LLRR+RDFA++ I I Sbjct: 191 DIVQRSASILKVPISMEAAIELASRSRGTPRIANALLRRIRDFAQIKGNGEIDIAITRFG 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D G D++D + L+ + F GGPVGI T++ +SE + IE++ EP++IQ+GF Sbjct: 251 LKALNVDAHGLDEMDNKILSTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQEGF 310 Query: 310 IQRTPRGRLLMPIAWQHLG 328 I RTPRGR + +A++HLG Sbjct: 311 IVRTPRGREVTELAYKHLG 329 >gi|329576229|gb|EGG57747.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1467] Length = 338 Score = 348 bits (893), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 175/331 (52%), Positives = 226/331 (68%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M + E LLS + +A I LRP+ L ++ GQ + L ++IEAAK+R EALDH L Sbjct: 1 MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKSRNEALDHTLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L LE DVLFIDEIHRL Sbjct: 61 YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LY AMEDF +D+MVG+G +A V L FTL+ ATTR G+L+ PL+DRFGI Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y+ +DLK IV R A + + +E A EIA RSRGTPRIA RLL+RVRDFA+V Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I R IAD AL L +D G D +D + L + +GGGPVG+ T+S + E + +ED+ Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+IQ+GFI+RTPRGR+ P A+ H G D Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYD 331 >gi|325954063|ref|YP_004237723.1| Holliday junction ATP-dependent DNA helicase ruvB [Weeksella virosa DSM 16922] gi|323436681|gb|ADX67145.1| Holliday junction ATP-dependent DNA helicase ruvB [Weeksella virosa DSM 16922] Length = 344 Score = 348 bits (893), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 167/308 (54%), Positives = 225/308 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ ++F GQ NL++F++A+K R EALDHVL GPPGLGKTTLA ++A ELGV Sbjct: 23 VRPQQFDDFAGQAHILENLEIFVKASKLRNEALDHVLLHGPPGLGKTTLANIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ K GDLA LLTNLE DVLFIDEIHR+S ++EE LY AMEDF++D+M+ G Sbjct: 83 IKITSGPVLDKPGDLAGLLTNLEPNDVLFIDEIHRMSPVIEEYLYSAMEDFKIDIMIESG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+I L+ FTLI ATTR GLLT PL+ RFGI R +Y +E L +I++R +++ Sbjct: 143 PNARSVQIGLNPFTLIGATTRSGLLTAPLRARFGINFRFEYYSVELLSSIIERSSRILHT 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +EAA EIA RSRGTPRIA LLRR RDFA++ IT++IA+ +L L +D+ G D Sbjct: 203 PIDEEAAIEIASRSRGTPRIANALLRRTRDFAQIKGDGKITKKIANYSLSALKVDQNGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R LT + + F GGPVGI TI+ + E +E++ EPY+IQ+G++ RT RGR+ Sbjct: 263 EMDNRILTTLIKKFNGGPVGITTIATAVGENGGTLEEVYEPYLIQEGYLMRTARGRVATE 322 Query: 322 IAWQHLGI 329 A++HLGI Sbjct: 323 KAYRHLGI 330 >gi|330831901|ref|YP_004400726.1| Holliday junction DNA helicase subunit B [Streptococcus suis ST3] gi|329306124|gb|AEB80540.1| Holliday junction DNA helicase, subunit B [Streptococcus suis ST3] Length = 333 Score = 348 bits (893), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 172/307 (56%), Positives = 219/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 21 LRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL ALL +LE DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G Sbjct: 81 IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 + RSV + L FTLI ATTR G+L+NPL+ RFGI + +YE+ DL IV+R A + + Sbjct: 141 EAGRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDM 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRDFA++ I I D AL L +D+ G D Sbjct: 201 EITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLIDDNITDKALTMLDVDREGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQQGF+ RT GR+ Sbjct: 261 YVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA 320 Query: 322 IAWQHLG 328 A++HLG Sbjct: 321 KAYEHLG 327 >gi|325299225|ref|YP_004259142.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides salanitronis DSM 18170] gi|324318778|gb|ADY36669.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides salanitronis DSM 18170] Length = 341 Score = 348 bits (893), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 174/307 (56%), Positives = 227/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F+GQ + NL++F++AA+ RAEALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLQFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FRVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + L +YE L I+ R AK+ G+ Sbjct: 143 PSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYEDSTLTKIILRSAKILGV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 EAA EIA RSRGTPRIA LLRRVRDFA+V + I +IA AL L ID+ G D Sbjct: 203 PCDTEAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGRIDLKIAQFALEALNIDRYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + L I F GGPVG+ TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 263 QIDNKLLCTIIDKFRGGPVGLTTIATALGEDPGTIEEVYEPFLIKEGFLKRTPRGREVTE 322 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 323 LAYRHLG 329 >gi|317495144|ref|ZP_07953514.1| Holliday junction DNA helicase RuvB [Gemella moribillum M424] gi|316914566|gb|EFV36042.1| Holliday junction DNA helicase RuvB [Gemella moribillum M424] Length = 333 Score = 348 bits (893), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 168/320 (52%), Positives = 234/320 (73%), Gaps = 1/320 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N +E+ + SL RP+ L ++ GQ + +NLK+FIEAAK RAE LDH L GPPGLGKTTL Sbjct: 11 NDGEENEEQSL-RPKFLNQYIGQEQIKNNLKIFIEAAKLRAEVLDHCLLYGPPGLGKTTL 69 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+GV + TSGP I K+GDLAA+LT+LE DVLFIDEIHR+S +EEILY AME Sbjct: 70 ATIIANEMGVGIKYTSGPAIEKSGDLAAILTSLEPGDVLFIDEIHRISRSIEEILYSAME 129 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF LD+++G+G +R+++I L FTL+ ATTR G LT PL+DRFG+ RL FY +++LK Sbjct: 130 DFYLDIVIGKGDESRNIRIELPPFTLVGATTRAGALTAPLRDRFGVHCRLEFYNVDELKN 189 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 I+ R + + + ++++ EIAMRSRGTPRIA RLL+RVRDFA+V + IT+++A ++L Sbjct: 190 IIDRTSDIFNCEIDEQSSYEIAMRSRGTPRIANRLLKRVRDFAQVKNDGVITQKLATSSL 249 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L +D G D +D + L + + + G VG+ETI+ + E IED+ EPY++++GFI Sbjct: 250 DLLQVDGQGLDSIDYKILECLIKRYDGRAVGLETIAITIGEESITIEDVYEPYLVKEGFI 309 Query: 311 QRTPRGRLLMPIAWQHLGID 330 +RTPRGR P A++HLGI+ Sbjct: 310 ERTPRGRRATPKAYKHLGIE 329 >gi|237716838|ref|ZP_04547319.1| holliday junction DNA helicase ruvB [Bacteroides sp. D1] gi|262405608|ref|ZP_06082158.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_22] gi|294644445|ref|ZP_06722208.1| Holliday junction DNA helicase RuvB [Bacteroides ovatus SD CC 2a] gi|294810440|ref|ZP_06769097.1| Holliday junction DNA helicase RuvB [Bacteroides xylanisolvens SD CC 1b] gi|298483808|ref|ZP_07001980.1| holliday junction DNA helicase RuvB [Bacteroides sp. D22] gi|229442821|gb|EEO48612.1| holliday junction DNA helicase ruvB [Bacteroides sp. D1] gi|262356483|gb|EEZ05573.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_22] gi|292640280|gb|EFF58535.1| Holliday junction DNA helicase RuvB [Bacteroides ovatus SD CC 2a] gi|294442405|gb|EFG11215.1| Holliday junction DNA helicase RuvB [Bacteroides xylanisolvens SD CC 1b] gi|295086060|emb|CBK67583.1| Holliday junction DNA helicase subunit RuvB [Bacteroides xylanisolvens XB1A] gi|298269995|gb|EFI11584.1| holliday junction DNA helicase RuvB [Bacteroides sp. D22] Length = 343 Score = 348 bits (893), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 171/307 (55%), Positives = 227/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + E+F+GQ + NL++F++AA+ R EALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 24 LRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIANELGVG 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 84 FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L I++R A + + Sbjct: 144 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDILSNIIRRSASILDV 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + AA EIA RSRGTPRIA LLRRVRDFA+V +I EIA AL L IDK G D Sbjct: 204 PCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGTGSIDTEIAQFALEALNIDKYGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVGI TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 264 EIDNKILCTIIDKFKGGPVGITTIATALGEDAGTIEEVYEPFLIKEGFMKRTPRGREVTE 323 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 324 LAYKHLG 330 >gi|160915301|ref|ZP_02077514.1| hypothetical protein EUBDOL_01310 [Eubacterium dolichum DSM 3991] gi|158433100|gb|EDP11389.1| hypothetical protein EUBDOL_01310 [Eubacterium dolichum DSM 3991] Length = 336 Score = 348 bits (892), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 170/315 (53%), Positives = 230/315 (73%), Gaps = 1/315 (0%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D + LRP+ L+E+ GQ + NL++FIEAAK R EALDHVL GPPGLGKTTL+ ++A E Sbjct: 14 DEATLRPQHLDEYIGQRQLKENLQIFIEAAKQRNEALDHVLLYGPPGLGKTTLSYILANE 73 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +G N ++TSGP I K+GDLAA+L+ L+ DVLFIDEIHRL VEE+LYPAMED+ +D++ Sbjct: 74 MGGNIKTTSGPSIEKSGDLAAILSTLQPGDVLFIDEIHRLPKQVEEVLYPAMEDYCIDIL 133 Query: 138 VG-EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196 VG + + RS++++L FTL+ ATTR G LT PL+DRFGI +L FYE+E+L+ I+ R A Sbjct: 134 VGKDSTTTRSIRLDLPPFTLVGATTRAGDLTAPLRDRFGIVSQLEFYELEELQQIIARTA 193 Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256 ++ + A EIA+RSRGTPRIA RL RRVRDFA+V + I++EIA AL RL +D Sbjct: 194 RVMNTEIESSAVTEIALRSRGTPRIANRLFRRVRDFAQVMNDGVISKEIAAMALDRLKVD 253 Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316 +G D +D +YL I F GGPVG+E +++ + E +ED+ EPY++Q GFI RTPRG Sbjct: 254 HLGLDNVDHKYLKGIIERFKGGPVGLEALASSIGEETMTLEDVYEPYLLQIGFINRTPRG 313 Query: 317 RLLMPIAWQHLGIDI 331 R++ A+ HLG D+ Sbjct: 314 RIVTEKAYAHLGYDL 328 >gi|218295182|ref|ZP_03496018.1| Holliday junction DNA helicase RuvB [Thermus aquaticus Y51MC23] gi|218244385|gb|EED10910.1| Holliday junction DNA helicase RuvB [Thermus aquaticus Y51MC23] Length = 323 Score = 348 bits (892), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 179/312 (57%), Positives = 230/312 (73%), Gaps = 1/312 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+E+ GQ LKV++EAAKAR E L+H+L GPPGLGKTTLA V+A ELGVN Sbjct: 7 LRPKTLDEYIGQERLKKKLKVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAYELGVN 66 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R+TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS EE LYPAMEDF +D+++G+ Sbjct: 67 IRTTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 126 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR+V++ L RFTLI ATTR GL+T PL+ RFGI L +Y +E+L V+R A+L G Sbjct: 127 GPAARTVRLELPRFTLIGATTRPGLITAPLRSRFGIVEHLEYYTLEELMEGVKRDARLLG 186 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + +T+EAA EIA RSRGT RIA RL RRVRDFA+VA + IT E A AL L +D++G Sbjct: 187 VGITEEAAREIAKRSRGTMRIAKRLFRRVRDFAQVAGEEVITGERAKEALNALGLDELGL 246 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 ++ D L ++ FGGGPVG+ T++ LSE +E++ EPY+IQQG I+RTPRGR+ Sbjct: 247 EKRDREILEVLIGRFGGGPVGLGTLATALSEDPGTLEEVHEPYLIQQGLIKRTPRGRVAT 306 Query: 321 PIAWQHLGIDIP 332 A++HLG P Sbjct: 307 ERAYRHLGYPPP 318 >gi|153807203|ref|ZP_01959871.1| hypothetical protein BACCAC_01481 [Bacteroides caccae ATCC 43185] gi|149130323|gb|EDM21533.1| hypothetical protein BACCAC_01481 [Bacteroides caccae ATCC 43185] Length = 343 Score = 348 bits (892), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 176/322 (54%), Positives = 234/322 (72%), Gaps = 4/322 (1%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L SR E+A LRP + E+F+GQ + NL++F++AA+ R EALDHVL GPPGLG Sbjct: 13 LTSRERDFENA----LRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVLLHGPPGLG 68 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY Sbjct: 69 KTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLY 128 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + Sbjct: 129 SAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDD 188 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 L I++R A + + + AA EIA RSRGTPRIA LLRRVRDFA+V + +I EIA Sbjct: 189 ILSNIIRRSASILDVPCSLRAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIA 248 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 AL L IDK G D++D + L I F GGPVGI TI+ L E IE++ EP++I+ Sbjct: 249 QFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGITTIATALGEDAGTIEEVYEPFLIK 308 Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328 +GF++RTPRGR + +A++HLG Sbjct: 309 EGFMKRTPRGREVTELAYKHLG 330 >gi|29348694|ref|NP_812197.1| Holliday junction DNA helicase RuvB [Bacteroides thetaiotaomicron VPI-5482] gi|253568961|ref|ZP_04846371.1| Holliday junction DNA helicase ruvB [Bacteroides sp. 1_1_6] gi|298387062|ref|ZP_06996616.1| holliday junction DNA helicase RuvB [Bacteroides sp. 1_1_14] gi|44888482|sp|Q8A2M0|RUVB_BACTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|29340599|gb|AAO78391.1| Holliday junction DNA helicase ruvB [Bacteroides thetaiotaomicron VPI-5482] gi|251840980|gb|EES69061.1| Holliday junction DNA helicase ruvB [Bacteroides sp. 1_1_6] gi|298260212|gb|EFI03082.1| holliday junction DNA helicase RuvB [Bacteroides sp. 1_1_14] Length = 343 Score = 348 bits (892), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 175/322 (54%), Positives = 234/322 (72%), Gaps = 4/322 (1%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L SR E+A LRP + E+F+GQ + NL++F++AA+ R EALDHVL GPPGLG Sbjct: 13 LTSRERDFENA----LRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVLLHGPPGLG 68 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY Sbjct: 69 KTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLY 128 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + Sbjct: 129 SAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDD 188 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 L I++R A + + + AA EIA RSRGTPRIA LLRRVRDFA+V + +I EIA Sbjct: 189 ILSNIIRRSASILDVPCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIA 248 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 AL L IDK G D++D + L I F GGPVG+ TI+ L E IE++ EP++I+ Sbjct: 249 QFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIK 308 Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328 +GF++RTPRGR + +A++HLG Sbjct: 309 EGFMKRTPRGREVTELAYKHLG 330 >gi|255690278|ref|ZP_05413953.1| holliday junction DNA helicase RuvB [Bacteroides finegoldii DSM 17565] gi|260624181|gb|EEX47052.1| holliday junction DNA helicase RuvB [Bacteroides finegoldii DSM 17565] Length = 344 Score = 348 bits (892), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 171/307 (55%), Positives = 227/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + E+F+GQ + NL++F++AA+ R EALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 24 LRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIANELGVG 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 84 FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L I++R A + + Sbjct: 144 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDILSNIIRRSASILDV 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + AA EIA RSRGTPRIA LLRRVRDFA+V +I EIA AL L IDK G D Sbjct: 204 PCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGTGSIDTEIAQFALEALNIDKYGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVGI TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 264 EIDNKILCTIIDKFKGGPVGITTIATALGEDAGTIEEVYEPFLIKEGFMKRTPRGREVTE 323 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 324 LAYKHLG 330 >gi|125716944|ref|YP_001034077.1| Holliday junction DNA helicase RuvB [Streptococcus sanguinis SK36] gi|166231561|sp|A3CK22|RUVB_STRSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|125496861|gb|ABN43527.1| Holliday junction DNA helicase ruvB, putative [Streptococcus sanguinis SK36] gi|325695281|gb|EGD37181.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK150] gi|327460091|gb|EGF06430.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK1] gi|327472240|gb|EGF17677.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK408] gi|327488682|gb|EGF20482.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK1058] Length = 332 Score = 348 bits (892), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 169/309 (54%), Positives = 226/309 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI K+GDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL IV+R A++ + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+T EAA E+A+RSRGTPRIA RLL+RVRD+A++ I +I D AL L +D+ G D Sbjct: 200 AITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|167764042|ref|ZP_02436169.1| hypothetical protein BACSTE_02425 [Bacteroides stercoris ATCC 43183] gi|167698158|gb|EDS14737.1| hypothetical protein BACSTE_02425 [Bacteroides stercoris ATCC 43183] Length = 343 Score = 348 bits (892), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 170/307 (55%), Positives = 228/307 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F+GQ + NL++F++AA+ R EALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 24 LRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIANELGVG 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 84 FKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L I++R A + + Sbjct: 144 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLSGIIRRSASILDV 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + AA EIA RSRGTPRIA LLRRVRDFA+V + +I EIA+ AL L IDK G D Sbjct: 204 PCSTRAASEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIANFALEALNIDKYGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 264 EIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFLKRTPRGREVTE 323 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 324 LAYKHLG 330 >gi|288906365|ref|YP_003431587.1| Holliday junction DNA helicase RuvB [Streptococcus gallolyticus UCN34] gi|306832410|ref|ZP_07465563.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979378|ref|YP_004289094.1| Holliday junction DNA helicase RuvB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733091|emb|CBI14672.1| Holliday junction DNA helicase RuvB [Streptococcus gallolyticus UCN34] gi|304425450|gb|EFM28569.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179306|emb|CBZ49350.1| Holliday junction DNA helicase RuvB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 332 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 168/307 (54%), Positives = 224/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + + LK+FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQFLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGNG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y++EDL IV+R A + + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYDVEDLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPRIA RLL+RVRD+A++ IT++I D AL L +D G D Sbjct: 200 EIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIITKDITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATE 319 Query: 322 IAWQHLG 328 A++HLG Sbjct: 320 KAYEHLG 326 >gi|260910790|ref|ZP_05917440.1| crossover junction endoribonuclease subunit B [Prevotella sp. oral taxon 472 str. F0295] gi|260635087|gb|EEX53127.1| crossover junction endoribonuclease subunit B [Prevotella sp. oral taxon 472 str. F0295] Length = 344 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 171/310 (55%), Positives = 227/310 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP ++F+GQ + NL+VF+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPPKFQDFSGQSKVVENLEVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEANDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTLI ATTR GLLT PL+ RFGI + L +Y+ + L I++R A++ + Sbjct: 143 PSARSIQIDLNPFTLIGATTRSGLLTAPLRARFGINLHLEYYDPQTLARIIKRSARILNV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEAA EI+ RSRGTPRIA LLRRVRDFA+V +I IA +L L ID+ G D Sbjct: 203 PIDDEAAMEISRRSRGTPRIANALLRRVRDFAQVKGNGSIDTVIARLSLTALNIDQYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L I F GGPVG+ TI+ + E +E++ EPY+I +GFI+RT RGR++ Sbjct: 263 EIDNRILLTIIDKFQGGPVGVSTIATAIGEDAGTLEEVYEPYLIMEGFIKRTQRGRMVTE 322 Query: 322 IAWQHLGIDI 331 +A+QHLG +I Sbjct: 323 LAYQHLGRNI 332 >gi|328955748|ref|YP_004373081.1| Holliday junction DNA helicase subunit RuvB [Coriobacterium glomerans PW2] gi|328456072|gb|AEB07266.1| Holliday junction DNA helicase subunit RuvB [Coriobacterium glomerans PW2] Length = 367 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 170/327 (51%), Positives = 237/327 (72%), Gaps = 1/327 (0%) Query: 5 EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LL+ ++S +D ++ LRP+ LE++ GQ +L++ IEAA+ R E LDHV+F GPP Sbjct: 30 ERLLTADLSPDDLEVERTLRPQRLEDYCGQSHIKRSLRILIEAARHRGECLDHVMFSGPP 89 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA V+A ELG ++TSGP I + GDLAA+LTNL+ DVLFIDEIHRL+ VEE Sbjct: 90 GLGKTTLATVLANELGAQIKTTSGPAIERTGDLAAILTNLQPGDVLFIDEIHRLNRSVEE 149 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+GP+ARS+++ + RFTL+ ATTR G+LT PL+DRFGI RL++Y Sbjct: 150 VLYPAMEDFALDIVIGKGPAARSIRLEIPRFTLVGATTRSGMLTGPLRDRFGISFRLDYY 209 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 I+DL IV+R A++ G+ + ++A EIA RSRGTPR+A RLL+RVRD+A+V +I Sbjct: 210 AIDDLAAIVERSARILGVDIDADSAHEIASRSRGTPRLANRLLKRVRDYAQVRGGGSIDL 269 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 I+ +L ID++G D +DLR L +AR F G VG+ T+++ + E + D+ EPY Sbjct: 270 SISQESLTFFEIDELGLDWMDLRILETLARTFRGRAVGLSTLASAVGEDPATLADVYEPY 329 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330 ++Q G + RTP+GR P A+ HLG D Sbjct: 330 LLQCGLMVRTPQGRQATPAAFDHLGCD 356 >gi|258424066|ref|ZP_05686948.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9635] gi|257845687|gb|EEV69719.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9635] gi|302333314|gb|ADL23507.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus JKD6159] Length = 334 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 168/324 (51%), Positives = 232/324 (71%), Gaps = 1/324 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++ +++ E+ D L LRP L ++ GQ SNL+VFI+AAK R E LDHVL GPP Sbjct: 3 ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS +VEE Sbjct: 63 GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +RL +Y Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 DLK I+ R A++ G + DE+A E+A RSRGTPR+A RLL+RVRDF +V + I Sbjct: 183 NESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 E AL L +D+ G D +D + + I + + GGPVG++TI+ + E R IED+ EP+ Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327 +IQ+GF++RTPRGR P+A++H Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326 >gi|325697228|gb|EGD39114.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK160] gi|328944788|gb|EGG38949.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK1087] Length = 332 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 169/309 (54%), Positives = 226/309 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L+E+ GQ + + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPRYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI K+GDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL IV+R A++ + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRD+A++ I +I D AL L +D+ G D Sbjct: 200 DITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|227518047|ref|ZP_03948096.1| Holliday junction DNA helicase B [Enterococcus faecalis TX0104] gi|256855045|ref|ZP_05560406.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis T8] gi|307291532|ref|ZP_07571409.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0411] gi|227074483|gb|EEI12446.1| Holliday junction DNA helicase B [Enterococcus faecalis TX0104] gi|256709558|gb|EEU24605.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis T8] gi|306497397|gb|EFM66937.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0411] gi|315026741|gb|EFT38673.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX2137] gi|315028753|gb|EFT40685.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX4000] Length = 338 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 175/331 (52%), Positives = 225/331 (67%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M + E LLS + +A I LRP+ L ++ GQ + L ++IEAAK R EALDH L Sbjct: 1 MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L LE DVLFIDEIHRL Sbjct: 61 YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LY AMEDF +D+MVG+G +A V L FTL+ ATTR G+L+ PL+DRFGI Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y+ +DLK IV R A + + +E A EIA RSRGTPRIA RLL+RVRDFA+V Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I R IAD AL L +D G D +D + L + +GGGPVG+ T+S + E + +ED+ Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+IQ+GFI+RTPRGR+ P A+ H G D Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYD 331 >gi|167755867|ref|ZP_02427994.1| hypothetical protein CLORAM_01384 [Clostridium ramosum DSM 1402] gi|237734835|ref|ZP_04565316.1| holliday junction DNA helicase B [Mollicutes bacterium D7] gi|167704806|gb|EDS19385.1| hypothetical protein CLORAM_01384 [Clostridium ramosum DSM 1402] gi|229382163|gb|EEO32254.1| holliday junction DNA helicase B [Coprobacillus sp. D7] Length = 329 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 172/330 (52%), Positives = 233/330 (70%), Gaps = 3/330 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M R +L NV +D S LRP + +E+ GQ NLKVF+ AAK R E+LDHVL G Sbjct: 1 MTRNEILDANVIDDD---SSLRPSSFDEYVGQTNLKENLKVFVGAAKLRDESLDHVLLYG 57 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTT++ ++A E+G N + T+GP I K GDL A+LT LE DVLFIDEIHRL+ +V Sbjct: 58 PPGLGKTTMSMIIANEMGTNIKITTGPSIEKTGDLVAILTALEPGDVLFIDEIHRLNKVV 117 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMEDF +D+++G+ S RSV+I+L FTL+ ATTR G L+ PL+DRFGI +L Sbjct: 118 EEILYPAMEDFCVDVVIGKEASTRSVRIDLPPFTLVGATTRAGDLSAPLRDRFGIISKLE 177 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y+ DLKTI+ R +++ + + D+A +AMRSRGTPRIA RL RRVRDFA+ + I Sbjct: 178 YYDETDLKTIIDRTSRVYSMPMDDDAKSALAMRSRGTPRIANRLFRRVRDFAQFNGEEII 237 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 ++E AL RL +D++G D +D +YL I F GGPVG+E+++A + E +ED+ E Sbjct: 238 SKERTIEALDRLKVDQLGLDDVDHKYLLGIIHRFKGGPVGLESLAASIGEEPQTLEDVYE 297 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331 PY++Q G I+RTPRGR+ A++HL I+I Sbjct: 298 PYLLQIGLIKRTPRGRVATSEAYKHLNINI 327 >gi|225873676|ref|YP_002755135.1| Holliday junction DNA helicase RuvB [Acidobacterium capsulatum ATCC 51196] gi|225793816|gb|ACO33906.1| Holliday junction DNA helicase RuvB [Acidobacterium capsulatum ATCC 51196] Length = 356 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 174/334 (52%), Positives = 237/334 (70%), Gaps = 1/334 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 +D E L+S + E+ L LRP L EF GQ +A L + +EAA++R EALDHVL Sbjct: 18 LDTERLISAARADEEDSFELKLRPTHLREFIGQNKAKEQLAIALEAARSRGEALDHVLLF 77 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A EL V F+ TSGP + GDL A+LTNL ++ VLF+DEIHRL + Sbjct: 78 GPPGLGKTTLATIIANELSVGFQQTSGPALQIQGDLTAILTNLREKQVLFLDEIHRLQPV 137 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EE LY A+ED++LD+++G+GP+AR+ +++ FT +AATTR GLL++PL+ RFGI +RL Sbjct: 138 LEEKLYTALEDYKLDIIIGQGPAARTHVMDIKPFTFVAATTRPGLLSSPLRSRFGILLRL 197 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +DL+ IVQR A++ + + + A EIAMRSRGTPRIA RLLRRVRDFA+V Sbjct: 198 EFYTDDDLRVIVQRSAEVLHVPIDADGAAEIAMRSRGTPRIANRLLRRVRDFAQVRGTGE 257 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I RE A AL L +D GFD LD R L I + GGPVG+ T++A L+E +DA+E++ Sbjct: 258 INRETAMQALELLEVDAHGFDDLDRRLLLTIIEKYDGGPVGLNTLAATLAEEQDALEEVY 317 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EP++IQ GF+ RTPRGR+ A++H G+ +P + Sbjct: 318 EPFLIQHGFLDRTPRGRVATRAAYEHFGLPLPRK 351 >gi|325689150|gb|EGD31157.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK115] Length = 332 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 169/309 (54%), Positives = 225/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI K+GDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL IV+R A++ + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+AMRSRGTPRIA RLL+RVRD+A++ I +I D AL L +D+ G D Sbjct: 200 DITHEAAKELAMRSRGTPRIANRLLKRVRDYAQIMSNGLIDDKITDQALSMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|296875469|ref|ZP_06899542.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus parasanguinis ATCC 15912] gi|296433536|gb|EFH19310.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus parasanguinis ATCC 15912] Length = 332 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 174/317 (54%), Positives = 227/317 (71%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 + E+A LRP+ L E+ GQ + LK+FIEAAK R EALDHVL GPPGLGKTT+A Sbjct: 10 MGDEEAVERTLRPQYLHEYIGQDKVKDQLKIFIEAAKLRDEALDHVLLFGPPGLGKTTMA 69 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 V+A ELGVN + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMED Sbjct: 70 FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F +D+M+G G S+RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE +DL I Sbjct: 130 FYIDIMIGAGESSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEQDDLTEI 189 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V+R A++ + +T EAA E+++RSRGTPRIA RLL+RVRDFA++ I I D AL Sbjct: 190 VERTAEIFEMEITHEAAEELSLRSRGTPRIANRLLKRVRDFAQIMGDGLIDDSITDKALS 249 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L +D G D +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309 Query: 312 RTPRGRLLMPIAWQHLG 328 RT GR+ A++HLG Sbjct: 310 RTRTGRVATRKAYEHLG 326 >gi|29374723|ref|NP_813875.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis V583] gi|227555749|ref|ZP_03985796.1| Holliday junction DNA helicase B [Enterococcus faecalis HH22] gi|229547069|ref|ZP_04435794.1| Holliday junction DNA helicase B [Enterococcus faecalis TX1322] gi|229550641|ref|ZP_04439366.1| Holliday junction DNA helicase B [Enterococcus faecalis ATCC 29200] gi|257421401|ref|ZP_05598391.1| holliday junction DNA helicase ruvB [Enterococcus faecalis X98] gi|293384505|ref|ZP_06630376.1| holliday junction DNA helicase RuvB [Enterococcus faecalis R712] gi|293389010|ref|ZP_06633492.1| holliday junction DNA helicase RuvB [Enterococcus faecalis S613] gi|294780022|ref|ZP_06745401.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis PC1.1] gi|300862207|ref|ZP_07108287.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TUSoD Ef11] gi|307268983|ref|ZP_07550346.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX4248] gi|307274077|ref|ZP_07555286.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0855] gi|307276310|ref|ZP_07557436.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX2134] gi|307284122|ref|ZP_07564292.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0860] gi|307287113|ref|ZP_07567186.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0109] gi|312901231|ref|ZP_07760514.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0470] gi|312903816|ref|ZP_07762988.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0635] gi|312908742|ref|ZP_07767682.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis DAPTO 512] gi|312952498|ref|ZP_07771366.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0102] gi|312979205|ref|ZP_07790909.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis DAPTO 516] gi|44888455|sp|Q839T5|RUVB_ENTFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|29342181|gb|AAO79947.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis V583] gi|227175104|gb|EEI56076.1| Holliday junction DNA helicase B [Enterococcus faecalis HH22] gi|229304207|gb|EEN70203.1| Holliday junction DNA helicase B [Enterococcus faecalis ATCC 29200] gi|229307798|gb|EEN73785.1| Holliday junction DNA helicase B [Enterococcus faecalis TX1322] gi|257163225|gb|EEU93185.1| holliday junction DNA helicase ruvB [Enterococcus faecalis X98] gi|291078161|gb|EFE15525.1| holliday junction DNA helicase RuvB [Enterococcus faecalis R712] gi|291081629|gb|EFE18592.1| holliday junction DNA helicase RuvB [Enterococcus faecalis S613] gi|294452916|gb|EFG21339.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis PC1.1] gi|295112393|emb|CBL31030.1| Holliday junction DNA helicase, RuvB subunit [Enterococcus sp. 7L76] gi|300848732|gb|EFK76489.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TUSoD Ef11] gi|306501892|gb|EFM71182.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0109] gi|306503493|gb|EFM72742.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0860] gi|306506975|gb|EFM76119.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX2134] gi|306509202|gb|EFM78263.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0855] gi|306514652|gb|EFM83204.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX4248] gi|310625341|gb|EFQ08624.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis DAPTO 512] gi|310629594|gb|EFQ12877.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0102] gi|310632760|gb|EFQ16043.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0635] gi|311287970|gb|EFQ66526.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis DAPTO 516] gi|311291608|gb|EFQ70164.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0470] gi|315033493|gb|EFT45425.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0017] gi|315036484|gb|EFT48416.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0027] gi|315143242|gb|EFT87258.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX2141] gi|315148994|gb|EFT93010.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX4244] gi|315151352|gb|EFT95368.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0012] gi|315153489|gb|EFT97505.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0031] gi|315155060|gb|EFT99076.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0043] gi|315158503|gb|EFU02520.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0312] gi|315165798|gb|EFU09815.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1302] gi|315171309|gb|EFU15326.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1342] gi|315174119|gb|EFU18136.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1346] gi|315573927|gb|EFU86118.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0309B] gi|315579776|gb|EFU91967.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0630] gi|315581879|gb|EFU94070.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0309A] gi|323479299|gb|ADX78738.1| holliday junction DNA helicase RuvB [Enterococcus faecalis 62] gi|327533914|gb|AEA92748.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus faecalis OG1RF] Length = 338 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 175/331 (52%), Positives = 225/331 (67%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M + E LLS + +A I LRP+ L ++ GQ + L ++IEAAK R EALDH L Sbjct: 1 MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L LE DVLFIDEIHRL Sbjct: 61 YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LY AMEDF +D+MVG+G +A V L FTL+ ATTR G+L+ PL+DRFGI Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y+ +DLK IV R A + + +E A EIA RSRGTPRIA RLL+RVRDFA+V Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I R IAD AL L +D G D +D + L + +GGGPVG+ T+S + E + +ED+ Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+IQ+GFI+RTPRGR+ P A+ H G D Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYD 331 >gi|288928677|ref|ZP_06422523.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 317 str. F0108] gi|288329661|gb|EFC68246.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 317 str. F0108] Length = 344 Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 171/310 (55%), Positives = 227/310 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP ++F+GQ + NL+VF+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPPKFQDFSGQSKVVENLEVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEINDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTLI ATTR GLLT PL+ RFGI + L +Y+ + L I++R A++ + Sbjct: 143 PSARSIQIDLNPFTLIGATTRSGLLTAPLRARFGINLHLEYYDPQTLARIIKRSARILNV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEAA EI+ RSRGTPRIA LLRRVRDFA+V +I IA +L L ID+ G D Sbjct: 203 PIDDEAAMEISRRSRGTPRIANALLRRVRDFAQVKGNGSIDTVIARLSLTALNIDQYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L I F GGPVG+ TI+ + E +E++ EPY+I +GFI+RT RGR++ Sbjct: 263 EIDNRILLTIIDKFKGGPVGVSTIATAIGEDAGTLEEVYEPYLIMEGFIKRTQRGRMVTE 322 Query: 322 IAWQHLGIDI 331 +A+QHLG +I Sbjct: 323 LAYQHLGRNI 332 >gi|309775421|ref|ZP_07670424.1| holliday junction DNA helicase RuvB [Erysipelotrichaceae bacterium 3_1_53] gi|308916810|gb|EFP62547.1| holliday junction DNA helicase RuvB [Erysipelotrichaceae bacterium 3_1_53] Length = 337 Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 172/322 (53%), Positives = 233/322 (72%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N SQ + + LRP++L E+ GQ + NL VFIEAAK R EALDHVL GPPGLGKTTL Sbjct: 7 NESQSMDEEASLRPQSLREYIGQRQLKENLSVFIEAAKQRNEALDHVLLYGPPGLGKTTL 66 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + ++A E+G N ++TSGP I K GDLAA+L+ LE DVLFIDEIHRL VEEILYPAME Sbjct: 67 SYILANEMGGNIKTTSGPSIEKGGDLAAILSTLEPGDVLFIDEIHRLPKQVEEILYPAME 126 Query: 131 DFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 D+ +D++VG + + RS+++ L FTL+ ATTR G LT PL+DRFGI +L FYE+++L+ Sbjct: 127 DYCIDIVVGKDSATTRSIRLELPPFTLVGATTRAGDLTAPLRDRFGIVSQLEFYELQELQ 186 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 I+ R +++ + +EA EIA+RSRGTPRIA RL RRVRDFA V + I+++IA+ A Sbjct: 187 QIISRTSRVMDTEIEEEAVLEIALRSRGTPRIANRLFRRVRDFATVMNDGIISKQIAEMA 246 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L +L +D +G D +D +YL I F GGPVG+E +++ + E +ED+ EPY++Q GF Sbjct: 247 LDKLKVDHLGLDNVDHKYLKGIIERFRGGPVGLEALASSIGEETMTLEDVYEPYLLQIGF 306 Query: 310 IQRTPRGRLLMPIAWQHLGIDI 331 I RTPRGR++ A++HLG D+ Sbjct: 307 INRTPRGRVVTEKAYRHLGYDL 328 >gi|262039464|ref|ZP_06012768.1| holliday junction DNA helicase RuvB [Leptotrichia goodfellowii F0264] gi|261746531|gb|EEY34066.1| holliday junction DNA helicase RuvB [Leptotrichia goodfellowii F0264] Length = 353 Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 167/329 (50%), Positives = 234/329 (71%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M+ E +L+ ED LRP+T E+ GQ + + +FI+AAK R EA+DH+L G Sbjct: 1 MENERILASEELGEDNIQKTLRPKTFSEYIGQEDLKEKMNIFIKAAKMRNEAMDHILLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+ V Sbjct: 61 PPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEIHRLNTSV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMED +LD+++G+GPSARS++I L +FTLI ATT+ G L+ PL+DRFG+ R+ Sbjct: 121 EEILYPAMEDGELDILIGKGPSARSIRIELPKFTLIGATTKAGQLSTPLRDRFGVTHRME 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y++E+LK I++RGA + ++ ++ EIA RSRGTPRIA RL +R RDFA V + Sbjct: 181 YYKLEELKEIIRRGANIFQVSYDEDGITEIAKRSRGTPRIANRLFKRARDFALVEGKGIL 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 + D L L +D+ G D+LD L I + GGPVGIET+S L E + IE++ E Sbjct: 241 DKASVDGILKLLGVDESGLDELDRNILKSIINVYNGGPVGIETLSLLLGEDKRTIEEVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 PY+++ G+I+RT RGR++ ++HLG++ Sbjct: 301 PYLVKIGYIKRTQRGRVVTEHGYRHLGLE 329 >gi|269118811|ref|YP_003306988.1| Holliday junction DNA helicase RuvB [Sebaldella termitidis ATCC 33386] gi|268612689|gb|ACZ07057.1| Holliday junction DNA helicase RuvB [Sebaldella termitidis ATCC 33386] Length = 339 Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 170/330 (51%), Positives = 232/330 (70%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M D + +L+ ED LRPRT E+ GQ + +FI AA++R EA+DH+L Sbjct: 1 MEDIDRILTDKELSEDNVQKSLRPRTFNEYIGQKLLKEKMSIFIRAAQSRNEAMDHILLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+ Sbjct: 61 GPPGLGKTTLAGVIANEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEIHRLNTS 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYPAMED +LD+++G+GPSARS++I L +FTLI ATT+ G L+ PL+DRFG+ ++ Sbjct: 121 VEEILYPAMEDGELDILIGKGPSARSIRIELPKFTLIGATTKAGQLSTPLRDRFGVTHKM 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y IE+LK I+ RG + G+ + EIAMRSRGTPRIA RLL+R RD+AE+ Sbjct: 181 EYYNIEELKEILVRGIAILGIKAEENGIEEIAMRSRGTPRIANRLLKRARDYAEIKGTGV 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + ++ L L ID+ G D+LD L I N+ GGPVGIET+S L E + IE++ Sbjct: 241 LNQKSVKGVLDLLGIDEKGLDELDRSILKSIIVNYDGGPVGIETLSLLLGEDKRTIEEVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+++ GFI+RT RGR++ + HLG++ Sbjct: 301 EPYLVKIGFIKRTQRGRVVTNRGYVHLGLE 330 >gi|256820535|ref|YP_003141814.1| Holliday junction DNA helicase RuvB [Capnocytophaga ochracea DSM 7271] gi|256582118|gb|ACU93253.1| Holliday junction DNA helicase RuvB [Capnocytophaga ochracea DSM 7271] Length = 355 Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 176/325 (54%), Positives = 230/325 (70%), Gaps = 1/325 (0%) Query: 11 NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N S ++ DI LRP + ++F GQ NLKVF++AA R EALDH LF GPPGLGKTT Sbjct: 25 NYSAQELDIERALRPLSFDDFAGQEAVLENLKVFVKAANMRHEALDHTLFHGPPGLGKTT 84 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A ELGV + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS +VEE LY AM Sbjct: 85 LAHILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPVVEEYLYSAM 144 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D+M+ GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI RL +Y E L Sbjct: 145 EDYKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLA 204 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IV+R A + + ++ EAA E+A RSRGTPRIA LLRR+RDFA++ I I Sbjct: 205 DIVRRSASILKVPISMEAAIELASRSRGTPRIANALLRRIRDFAQIKGNGEINIAITRFG 264 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D G D++D + L+ + F GGPVGI T++ +SE + IE++ EP++IQ+GF Sbjct: 265 LKALNVDAHGLDEMDNKILSTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQEGF 324 Query: 310 IQRTPRGRLLMPIAWQHLGIDIPHR 334 I RTPRGR + +A++HLG P R Sbjct: 325 IVRTPRGREVTDLAYKHLGRVNPAR 349 >gi|227499580|ref|ZP_03929687.1| crossover junction endoribonuclease subunit B [Anaerococcus tetradius ATCC 35098] gi|227218339|gb|EEI83593.1| crossover junction endoribonuclease subunit B [Anaerococcus tetradius ATCC 35098] Length = 335 Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 169/310 (54%), Positives = 226/310 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+++ GQ + L +FI+++ +R E LDHVL GPPGLGKTTL+ ++A ELGVN Sbjct: 24 IRPKWLKDYIGQDKVKEKLDIFIKSSLSRNEPLDHVLLQGPPGLGKTTLSTIIANELGVN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I + DLA++LTNL D DVLFIDEIHR++ VEEILY AMEDF LD++VG+G Sbjct: 84 LRVTSGPAIERPSDLASILTNLSDGDVLFIDEIHRINRSVEEILYSAMEDFVLDIIVGKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+S++I+L RFTLI ATTR G+L+ PL+DRFG+ + LN Y+ +DL TIV+R A++ G+ Sbjct: 144 PNAQSIRIDLDRFTLIGATTRAGMLSAPLRDRFGVLLALNLYDTKDLTTIVKRSAQILGI 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ ++ A EIA RSRGTPRIA RLL+RVRDFA V I E + L L ID MG D Sbjct: 204 AIDEKGAVEIARRSRGTPRIANRLLKRVRDFAIVRANDQIDYETSKKGLELLEIDPMGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + + NF GGPVG++TI+A IED+ EPY++Q GFI RTPRGR+L Sbjct: 264 TMDKKIIMTMYDNFAGGPVGVDTIAASTGIENVTIEDVYEPYLLQIGFISRTPRGRVLTR 323 Query: 322 IAWQHLGIDI 331 A++H G+ I Sbjct: 324 KAYEHYGLKI 333 >gi|262068258|ref|ZP_06027870.1| holliday junction DNA helicase RuvB [Fusobacterium periodonticum ATCC 33693] gi|291377996|gb|EFE85514.1| holliday junction DNA helicase RuvB [Fusobacterium periodonticum ATCC 33693] Length = 338 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 163/309 (52%), Positives = 225/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++ +E+ GQ + + I+AA+ R +DH+L GPPGLGKTTLA V+A E+ N Sbjct: 20 LRPKSFDEYIGQENLKEKMNISIKAAQKRNMTVDHILLYGPPGLGKTTLAGVIANEMQAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+ VEEILYPAMED +LD+++G+G Sbjct: 80 LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNNTVEEILYPAMEDGELDIIIGKG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSA+S++I L FTLI ATTR GLL+ PL+DRFG+ ++ +Y I+++K I+ RGAK+ G+ Sbjct: 140 PSAKSIRIELPAFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNIDEIKAIIIRGAKILGV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++DE A EI+ RSRGTPRIA RLL+RVRD+ E+ TI A AL L +D G D Sbjct: 200 KISDEGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDMMSAKNALDMLGVDSSGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD + I N+ GGPVGIET+S L E R +E++ EPY+++ GF++RT RGR++ P Sbjct: 260 ELDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRVVTP 319 Query: 322 IAWQHLGID 330 A+QH D Sbjct: 320 KAYQHFKKD 328 >gi|224536855|ref|ZP_03677394.1| hypothetical protein BACCELL_01731 [Bacteroides cellulosilyticus DSM 14838] gi|224521521|gb|EEF90626.1| hypothetical protein BACCELL_01731 [Bacteroides cellulosilyticus DSM 14838] Length = 343 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 173/322 (53%), Positives = 235/322 (72%), Gaps = 4/322 (1%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L SR E+A LRP + E+F+GQ + NL++F++AA+ R EALDHVL GPPGLG Sbjct: 13 LTSRERDFENA----LRPLSFEDFSGQDKVVDNLRIFVKAARLRGEALDHVLLHGPPGLG 68 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY Sbjct: 69 KTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLY 128 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMED+++D+M+ +GPSARS++I+L+ FT++ ATTR GLLT PL+ RFGI + L +Y+ + Sbjct: 129 SAMEDYRIDIMIDKGPSARSIQIDLNPFTMVGATTRSGLLTAPLRARFGINLHLEYYDDD 188 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 L I++R A + + + AA EIA RSRGTPRIA LLRRVRDFA+V + +I EIA Sbjct: 189 VLSGIIRRSAGILNVPCSTRAASEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIA 248 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 + AL L IDK G D++D + L I F GGPVG+ TI+ L E +E++ EP++I+ Sbjct: 249 NFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTLEEVYEPFLIK 308 Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328 +GF++RTPRGR + +A++HLG Sbjct: 309 EGFLKRTPRGREVTELAYKHLG 330 >gi|313204404|ref|YP_004043061.1| holliday junction DNA helicase subunit ruvb [Paludibacter propionicigenes WB4] gi|312443720|gb|ADQ80076.1| Holliday junction DNA helicase subunit RuvB [Paludibacter propionicigenes WB4] Length = 338 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 171/307 (55%), Positives = 225/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP T +F+GQ + NLK+F++AA+ R E+LDHVL GPPGLGKTTL+ ++A EL V Sbjct: 21 LRPLTFSDFSGQNKIVENLKIFVQAARMRTESLDHVLLHGPPGLGKTTLSNIIANELNVG 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA LLT+LE DVLFIDEIHRLS IVEE LY AMED+++D+M+ +G Sbjct: 81 FKITSGPVLDKPGDLAGLLTSLEVNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIMIDKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS+++ L+ FTLI ATTR GLLT PL+ RFGI +Y+IE + I++R ++L + Sbjct: 141 PSARSIQLELNPFTLIGATTRSGLLTAPLRARFGINCHFEYYDIEVITEIIKRSSRLLNV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EIA RSRGTPRIA LLRRVRDFA+V +I EIA AL L IDK G D Sbjct: 201 EIGHKAAVEIAGRSRGTPRIANALLRRVRDFAQVKGNGSIDVEIACYALEALNIDKYGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 261 EIDNKILNTIIDKFSGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFMKRTPRGREVTE 320 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 321 LAYKHLG 327 >gi|94984512|ref|YP_603876.1| Holliday junction DNA helicase B [Deinococcus geothermalis DSM 11300] gi|123079970|sp|Q1J1C7|RUVB_DEIGD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|94554793|gb|ABF44707.1| Holliday junction DNA helicase RuvB [Deinococcus geothermalis DSM 11300] Length = 331 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 174/311 (55%), Positives = 226/311 (72%), Gaps = 1/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L E+ GQ L V+++AAK R EALDH L GPPGLGKTTLA ++A ELGVN Sbjct: 9 LRPKSLAEYVGQARLKEKLGVYLQAAKGRKEALDHTLLFGPPGLGKTTLAHIIAAELGVN 68 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL + EE LYPAMEDF+LD+++G+ Sbjct: 69 IRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKLDIVLGQ 128 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR++++ L RFTL+ ATTR GL+T P++ RFGI L +Y E++ T + R A+L G Sbjct: 129 GPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTPEEIGTNLLRDARLLG 188 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 +T+EAA EI RSRGT RIA RLLRRVRD+A+VA KTI E A AL +L +D G Sbjct: 189 FGLTEEAAIEIGARSRGTMRIAKRLLRRVRDYADVAGEKTIELERAQDALDKLGLDTAGL 248 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D+ D +YL + F GGPVG++T++ +SE +ED+ EPY+IQ GFI+RTPRGR+ Sbjct: 249 DERDKKYLETLIHRFAGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRTPRGRVAT 308 Query: 321 PIAWQHLGIDI 331 A+ HLG+ + Sbjct: 309 AHAYDHLGLPV 319 >gi|152993673|ref|YP_001359394.1| Holliday junction DNA helicase RuvB [Sulfurovum sp. NBC37-1] gi|166231562|sp|A6QC28|RUVB_SULNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|151425534|dbj|BAF73037.1| holliday junction DNA helicase RuvB [Sulfurovum sp. NBC37-1] Length = 337 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 171/310 (55%), Positives = 229/310 (73%), Gaps = 5/310 (1%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + +E+ GQ + NLKVFIEA+K R EALDH+LF GPPGLGKTTLA ++A E+ N Sbjct: 20 LRPSSWDEYIGQEKIKKNLKVFIEASKRREEALDHILFFGPPGLGKTTLANIIASEMHTN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+ P+I KAGDLAALLTN+E+ D+LFIDEIHR+S +EEILYPAMEDF+LD+++G G Sbjct: 80 IKTTAAPMIEKAGDLAALLTNIEEGDILFIDEIHRMSPAIEEILYPAMEDFRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A++VKI+L RFTLI ATTR G+L+NPL++RFG+ R+ FY E+L IV + + Sbjct: 140 PAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQFYTPEELAKIVSQASHKLEK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 EAA EIA RSRGTPRIA RLL+RVRDF+EVA+ +T E A AL L ++ +GFD Sbjct: 200 PSKAEAAHEIARRSRGTPRIALRLLKRVRDFSEVANENEVTLERARYALDELGVNDLGFD 259 Query: 262 QLDLRYLTMI--ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 + D+R L ++ A+N P+G+ TI A LSE IED++EPY+I G+I+RT RGR+ Sbjct: 260 EQDIRLLELLVSAKN---KPMGLSTIGAALSEDEGTIEDVLEPYLIANGYIERTARGRIA 316 Query: 320 MPIAWQHLGI 329 P ++H + Sbjct: 317 TPKCYEHFKL 326 >gi|330683934|gb|EGG95701.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis VCU121] Length = 334 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 168/325 (51%), Positives = 230/325 (70%), Gaps = 1/325 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++ ++ E++D L LRP L+++ GQ SNL+VFI+AAK R E LDHVL GPP Sbjct: 3 ERMVDQSAHNEESDFELSLRPTKLKQYIGQSSIKSNLEVFIKAAKLREEPLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS +VEE Sbjct: 63 GLGKTTLSNIIANEMDVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +RL +Y Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 DLK I+ R A++ G + +E+A E+A RSRGTPR+A RLL+RVRDF +V I Sbjct: 183 NEADLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDDQIYI 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 E AL L +D G D +D + + I + GGPVG++TI+ + E R IED+ EP+ Sbjct: 243 ETTKRALKLLQVDDYGLDYIDHKMMNCILNQYKGGPVGLDTIAVSIGEERVTIEDVYEPF 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328 +IQ+GF++RTPRGR P+A +H G Sbjct: 303 LIQKGFLERTPRGRKATPLAHEHFG 327 >gi|329769668|ref|ZP_08261072.1| Holliday junction ATP-dependent DNA helicase ruvB [Gemella sanguinis M325] gi|328838423|gb|EGF88032.1| Holliday junction ATP-dependent DNA helicase ruvB [Gemella sanguinis M325] Length = 333 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 171/328 (52%), Positives = 230/328 (70%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD + + E+ + LRP+ L ++ GQ + +NLKVFIEAAK R+E LDH L G Sbjct: 1 MDERMVSANQNDGEEREEQSLRPKLLSQYIGQEQIKNNLKVFIEAAKIRSEVLDHCLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+ V + TSGP I K+GDLAA+LT+LE DVLFIDEIHR+S + Sbjct: 61 PPGLGKTTLATIIANEMEVGIKYTSGPAIEKSGDLAAILTSLEPGDVLFIDEIHRISRSI 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILY AMEDF LD+++G+G +RS++I L FTL+ ATTR G LT PL+DRFG+ RL Sbjct: 121 EEILYSAMEDFYLDIVIGKGDESRSIRIELPPFTLVGATTRAGALTAPLRDRFGVHCRLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY I +L+ I+ R A + G + E++ EIAMRSRGTPRIA RLL+RVRDFA+V + I Sbjct: 181 FYNIGELQNIINRTADIFGCEIDTESSYEIAMRSRGTPRIANRLLKRVRDFAQVKNNGII 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T+ +A +L L +D G D +D + L + + + G VG+ETI+ + E IED+ E Sbjct: 241 TQSLAKDSLDLLQVDSKGLDNIDYKILECLIKRYDGRAVGLETIAITIGEESITIEDVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 PY++++GFI+RTPRGR P A+QHLG+ Sbjct: 301 PYLVKEGFIERTPRGRRATPKAYQHLGL 328 >gi|315168285|gb|EFU12302.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1341] Length = 338 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 175/331 (52%), Positives = 225/331 (67%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M + E LLS + +A I LRP+ L ++ GQ + L ++IEAAK R EALDH L Sbjct: 1 MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L LE DVLFIDEIHRL Sbjct: 61 YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LY AMEDF +D+MVG+G +A V L FTL+ ATTR G+L+ PL+DRFGI Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y+ +DLK IV R A + + +E A EIA RSRGTPRIA RLL+RVRDFA+V Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I R IAD AL L +D G D +D + L + +GGGPVG+ T+S + E + +ED+ Sbjct: 241 KIDRVIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+IQ+GFI+RTPRGR+ P A+ H G D Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYD 331 >gi|298373909|ref|ZP_06983867.1| holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_19] gi|298268277|gb|EFI09932.1| holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_19] Length = 345 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 174/309 (56%), Positives = 227/309 (73%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 ++LRP +L +F+GQ + NLKVF+ AA+ R EALDHVL GPPGLGKTTL+ ++A ELG Sbjct: 25 NVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG 84 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 V F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS IVEE LY AMED+++D+++ Sbjct: 85 VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVID 144 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y++E L IV R A + Sbjct: 145 KGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANIL 204 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 + AA EIA RSRGTPRIA LLRRVRDFA+V I + IA +L L ID+ G Sbjct: 205 NVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNGDIDKAIACFSLEALNIDRYG 264 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 DQ+D + LT I F GGPVG+ TI+ L E +E++ EP++I++GFI+RTPRGR + Sbjct: 265 LDQIDNKLLTTIIDKFKGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV 324 Query: 320 MPIAWQHLG 328 +A+ HLG Sbjct: 325 TDLAYTHLG 333 >gi|322390585|ref|ZP_08064100.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus parasanguinis ATCC 903] gi|321142664|gb|EFX38127.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus parasanguinis ATCC 903] Length = 345 Score = 346 bits (888), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 174/317 (54%), Positives = 227/317 (71%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 + E+A LRP+ L E+ GQ + LK+FIEAAK R EALDHVL GPPGLGKTT+A Sbjct: 23 MGDEEAVERTLRPQYLHEYIGQDKVKDQLKIFIEAAKLRDEALDHVLLFGPPGLGKTTMA 82 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 V+A ELGVN + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMED Sbjct: 83 FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 142 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F +D+M+G G S+RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE +DL I Sbjct: 143 FYIDIMIGAGESSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEQDDLTEI 202 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V+R A++ + +T EAA E+++RSRGTPRIA RLL+RVRDFA++ I I D AL Sbjct: 203 VERTAEIFEMEITHEAAEELSLRSRGTPRIANRLLKRVRDFAQIMGDGLIDDTITDKALS 262 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L +D G D +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI Sbjct: 263 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 322 Query: 312 RTPRGRLLMPIAWQHLG 328 RT GR+ A++HLG Sbjct: 323 RTRTGRVATRKAYEHLG 339 >gi|227539702|ref|ZP_03969751.1| crossover junction endodeoxyribonuclease [Sphingobacterium spiritivorum ATCC 33300] gi|300773845|ref|ZP_07083714.1| crossover junction ATP-dependent DNA helicase RuvB [Sphingobacterium spiritivorum ATCC 33861] gi|227240344|gb|EEI90359.1| crossover junction endodeoxyribonuclease [Sphingobacterium spiritivorum ATCC 33300] gi|300760016|gb|EFK56843.1| crossover junction ATP-dependent DNA helicase RuvB [Sphingobacterium spiritivorum ATCC 33861] Length = 340 Score = 346 bits (888), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 173/308 (56%), Positives = 224/308 (72%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +LRP+T E+FTGQ + NL +F+ AAK R EALDHVL GPPGLGKTTL+ ++A E+GV Sbjct: 22 VLRPQTFEDFTGQEKILENLSIFVRAAKLRGEALDHVLLHGPPGLGKTTLSNIIANEMGV 81 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 + TSGPV+ K GDLA LLTNLE+ D+LFIDEIHRLS +VEE LY AMEDF++D+M+ Sbjct: 82 GIKITSGPVLDKPGDLAGLLTNLEEGDILFIDEIHRLSPLVEEYLYSAMEDFKIDIMLET 141 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+ARSV+I+L+ FTL+ ATTR GLLT PL+ RFGI RL +Y+ + L TIV R A + Sbjct: 142 GPNARSVQISLNPFTLVGATTRSGLLTAPLRARFGINSRLQYYDAKLLTTIVLRSATILN 201 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 ++DE A EIA RSRGTPRIA LLRR RDFA++ +I R IA AL L +D+ G Sbjct: 202 TPISDEGAYEIARRSRGTPRIANALLRRTRDFAQIKGNGSIDRAIAQYALNALNVDENGL 261 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D++D R LT I F GGPVG++TI+ + E IE++ EP++IQ+G++ RT RGR Sbjct: 262 DEMDNRILTTIIDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQEGYLMRTSRGRECT 321 Query: 321 PIAWQHLG 328 A++HLG Sbjct: 322 EAAFKHLG 329 >gi|332365355|gb|EGJ43118.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK1059] Length = 332 Score = 346 bits (888), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 168/309 (54%), Positives = 226/309 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI K+GDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE +DL IV+R A++ + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEADDLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRD+A++ I +I D AL L +D+ G D Sbjct: 200 DITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YVDQKILRTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|301311707|ref|ZP_07217632.1| holliday junction DNA helicase RuvB [Bacteroides sp. 20_3] gi|300830267|gb|EFK60912.1| holliday junction DNA helicase RuvB [Bacteroides sp. 20_3] Length = 341 Score = 346 bits (888), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 174/309 (56%), Positives = 227/309 (73%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 ++LRP +L +F+GQ + NLKVF+ AA+ R EALDHVL GPPGLGKTTL+ ++A ELG Sbjct: 21 NVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG 80 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 V F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS IVEE LY AMED+++D+++ Sbjct: 81 VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVID 140 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y++E L IV R A + Sbjct: 141 KGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANIL 200 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 + AA EIA RSRGTPRIA LLRRVRDFA+V I + IA +L L ID+ G Sbjct: 201 NVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNGDIDKAIACFSLEALNIDRYG 260 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 DQ+D + LT I F GGPVG+ TI+ L E +E++ EP++I++GFI+RTPRGR + Sbjct: 261 LDQIDNKLLTTIIDKFQGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV 320 Query: 320 MPIAWQHLG 328 +A+ HLG Sbjct: 321 TDLAYTHLG 329 >gi|329956350|ref|ZP_08296947.1| Holliday junction DNA helicase RuvB [Bacteroides clarus YIT 12056] gi|328524247|gb|EGF51317.1| Holliday junction DNA helicase RuvB [Bacteroides clarus YIT 12056] Length = 344 Score = 346 bits (888), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 170/307 (55%), Positives = 228/307 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F+GQ + NL++F++AA+ R EALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 24 LRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIANELGVG 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 84 FKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L I++R A + + Sbjct: 144 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLGGIIRRSANILDV 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + AA EIA RSRGTPRIA LLRRVRDFA+V + +I EIA+ AL L IDK G D Sbjct: 204 PCSTRAASEIAGRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIANFALEALNIDKYGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 264 EIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFLKRTPRGREVTE 323 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 324 LAYKHLG 330 >gi|218131744|ref|ZP_03460548.1| hypothetical protein BACEGG_03365 [Bacteroides eggerthii DSM 20697] gi|317474640|ref|ZP_07933914.1| Holliday junction DNA helicase RuvB [Bacteroides eggerthii 1_2_48FAA] gi|217986047|gb|EEC52386.1| hypothetical protein BACEGG_03365 [Bacteroides eggerthii DSM 20697] gi|316909321|gb|EFV31001.1| Holliday junction DNA helicase RuvB [Bacteroides eggerthii 1_2_48FAA] Length = 343 Score = 346 bits (888), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 169/307 (55%), Positives = 229/307 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F+GQ + NL++F++AA+ R EALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 24 LRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIANELGVG 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 84 FKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L I++R A + + Sbjct: 144 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLSGIIRRSASILDV 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EIA RSRGTPRIA LLRRVRDFA+V + +I +IA+ AL L IDK G D Sbjct: 204 PCSTKAASEIAGRSRGTPRIANALLRRVRDFAQVKGSGSIDTQIANFALEALNIDKYGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 264 EIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFLKRTPRGREVTE 323 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 324 LAYKHLG 330 >gi|256618466|ref|ZP_05475312.1| holliday junction DNA helicase RuvB [Enterococcus faecalis ATCC 4200] gi|256597993|gb|EEU17169.1| holliday junction DNA helicase RuvB [Enterococcus faecalis ATCC 4200] Length = 338 Score = 346 bits (888), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 174/331 (52%), Positives = 224/331 (67%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M + E LS + +A I LRP+ L ++ GQ + L ++IEAAK R EALDH L Sbjct: 1 MTEEERFLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L LE DVLFIDEIHRL Sbjct: 61 YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LY AMEDF +D+MVG+G +A V L FTL+ ATTR G+L+ PL+DRFGI Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y+ +DLK IV R A + + +E A EIA RSRGTPRIA RLL+RVRDFA+V Sbjct: 181 MEYYQEQDLKKIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I R IAD AL L +D G D +D + L + +GGGPVG+ T+S + E + +ED+ Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+IQ+GFI+RTPRGR+ P A+ H G D Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYD 331 >gi|262383193|ref|ZP_06076330.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_33B] gi|262296071|gb|EEY84002.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_33B] Length = 345 Score = 346 bits (888), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 174/309 (56%), Positives = 227/309 (73%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 ++LRP +L +F+GQ + NLKVF+ AA+ R EALDHVL GPPGLGKTTL+ ++A ELG Sbjct: 25 NVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG 84 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 V F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS IVEE LY AMED+++D+++ Sbjct: 85 VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVID 144 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y++E L IV R A + Sbjct: 145 KGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANIL 204 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 + AA EIA RSRGTPRIA LLRRVRDFA+V I + IA +L L ID+ G Sbjct: 205 NVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNGDIDKAIACFSLEALNIDRYG 264 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 DQ+D + LT I F GGPVG+ TI+ L E +E++ EP++I++GFI+RTPRGR + Sbjct: 265 LDQIDNKLLTTIIDKFQGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV 324 Query: 320 MPIAWQHLG 328 +A+ HLG Sbjct: 325 TDLAYTHLG 333 >gi|319945933|ref|ZP_08020183.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus australis ATCC 700641] gi|319747998|gb|EFW00242.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus australis ATCC 700641] Length = 354 Score = 346 bits (888), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 173/317 (54%), Positives = 227/317 (71%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 + E+A LRP+ L E+ GQ + LK+FIEAAK R EALDHVL GPPGLGKTT+A Sbjct: 32 MGDEEAVERTLRPQYLHEYIGQDKVKDQLKIFIEAAKLRDEALDHVLLFGPPGLGKTTMA 91 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 V+A ELGVN + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMED Sbjct: 92 FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 151 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F +D+M+G G ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE +DL I Sbjct: 152 FYIDIMIGAGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEQDDLTEI 211 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V+R A++ + +T EAA E+++RSRGTPRIA RLL+RVRDFA++ I I D AL Sbjct: 212 VERTAEIFEMEITHEAAEELSLRSRGTPRIANRLLKRVRDFAQIMGDGLIDDTITDKALS 271 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L +D G D +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI Sbjct: 272 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 331 Query: 312 RTPRGRLLMPIAWQHLG 328 RT GR+ A++HLG Sbjct: 332 RTRTGRVATRKAYEHLG 348 >gi|118444048|ref|YP_877906.1| Holliday junction DNA helicase RuvB [Clostridium novyi NT] gi|166231486|sp|A0PZV4|RUVB_CLONN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|118134504|gb|ABK61548.1| Holliday junction DNA helicase RuvB [Clostridium novyi NT] Length = 337 Score = 346 bits (888), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 176/328 (53%), Positives = 233/328 (71%), Gaps = 3/328 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++S + ED D+ LRP L E+ GQ + L +F +AAK R EALDHVL Sbjct: 1 MEDR--MVSASYKNEDFDVEHSLRPEKLSEYIGQDKVKEKLSIFTKAAKMRNEALDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++ARE+G + TSGP I + GD+AA+LT+L D DVLFIDEIHRL+ Sbjct: 59 YGPPGLGKTTLANIIAREMGGTLKVTSGPAIERPGDMAAILTSLNDYDVLFIDEIHRLNR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEI+YPAMED LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+ Sbjct: 119 TVEEIMYPAMEDNVLDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVLSA 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + FY ++LK I+ R +K+ G+ T+EAA EIA RSRGTPRIA RLL+RVRD+ +V Sbjct: 179 MEFYNEDELKEIILRSSKILGVVTTEEAAFEIARRSRGTPRIANRLLKRVRDYCDVKGDG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I IA AL L ID GFD++D + L I NF GGPVG+ET++ + E D I+D+ Sbjct: 239 VIDINIAKNALSLLEIDGEGFDKIDNKILEAIIDNFKGGPVGLETLAYFIGEELDTIQDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EPY++Q+GFI R PRGR A++HL Sbjct: 299 YEPYLLQKGFIVRMPRGRKATEKAYRHL 326 >gi|150009504|ref|YP_001304247.1| Holliday junction DNA helicase RuvB [Parabacteroides distasonis ATCC 8503] gi|166231508|sp|A6LG11|RUVB_PARD8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|149937928|gb|ABR44625.1| Holliday junction DNA helicase RuvB [Parabacteroides distasonis ATCC 8503] Length = 341 Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 174/309 (56%), Positives = 227/309 (73%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 ++LRP +L +F+GQ + NLKVF+ AA+ R EALDHVL GPPGLGKTTL+ ++A ELG Sbjct: 21 NVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG 80 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 V F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS IVEE LY AMED+++D+++ Sbjct: 81 VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVID 140 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y++E L IV R A + Sbjct: 141 KGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANIL 200 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 + AA EIA RSRGTPRIA LLRRVRDFA+V I + IA +L L ID+ G Sbjct: 201 NVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNGDIDKAIACFSLEALNIDRYG 260 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 DQ+D + LT I F GGPVG+ TI+ L E +E++ EP++I++GFI+RTPRGR + Sbjct: 261 LDQIDNKLLTTIIDKFKGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV 320 Query: 320 MPIAWQHLG 328 +A+ HLG Sbjct: 321 TDLAYTHLG 329 >gi|306834524|ref|ZP_07467637.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus bovis ATCC 700338] gi|304423326|gb|EFM26479.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus bovis ATCC 700338] Length = 332 Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 167/307 (54%), Positives = 223/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + + LK+FIEAAK R E+LDHVL GPPGLGKTT+A V+ ELGVN Sbjct: 20 LRPQFLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVITNELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGNG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y++EDL IV+R A + + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYDVEDLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPRIA RLL+RVRD+A++ IT++I D AL L +D G D Sbjct: 200 EIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIITKDITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATE 319 Query: 322 IAWQHLG 328 A++HLG Sbjct: 320 KAYEHLG 326 >gi|327403171|ref|YP_004344009.1| Holliday junction ATP-dependent DNA helicase ruvB [Fluviicola taffensis DSM 16823] gi|327318679|gb|AEA43171.1| Holliday junction ATP-dependent DNA helicase ruvB [Fluviicola taffensis DSM 16823] Length = 340 Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 171/312 (54%), Positives = 228/312 (73%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +LRP+ L++F GQ +A NL++F++AA R+E LDHVL GPPGLGKTTLA +++ EL Sbjct: 21 KVLRPKLLDDFAGQPQAVENLEIFVKAAIQRSEPLDHVLLHGPPGLGKTTLAHIISNELN 80 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 V F+ TSGPV+ K GDLA LLTNL DVLFIDEIHRLS +VEE LY AMED+ +D+++ Sbjct: 81 VGFKVTSGPVLDKPGDLAGLLTNLGHGDVLFIDEIHRLSPVVEEYLYSAMEDYCIDILID 140 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 G +ARSV+I+L+ FTLI ATTR GLLT PL+ RFGI +RLN+Y++E L +I++R A+L Sbjct: 141 SGANARSVQISLNPFTLIGATTRSGLLTAPLRARFGINLRLNYYDVETLASIIERSAELL 200 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 + + ++AA EI+ RSRGTPRIA +LRRVRDFA+V TIT EI AL L +DK G Sbjct: 201 NIPIQEQAAFEISRRSRGTPRIANAILRRVRDFAQVKGDGTITLEITKHALDALNVDKYG 260 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D++D R L + F GGPVG+ TI+ + E +E++ EP++IQ+GF+ RTPRGR Sbjct: 261 LDEMDNRILKTLIDKFKGGPVGLTTIATAIGENAGTLEEVYEPFLIQEGFLMRTPRGRKA 320 Query: 320 MPIAWQHLGIDI 331 A+ HLG D+ Sbjct: 321 TEKAFIHLGFDM 332 >gi|82751239|ref|YP_416980.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus RF122] gi|97190337|sp|Q2YT89|RUVB_STAAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|82656770|emb|CAI81199.1| Holliday junction DNA helicase [Staphylococcus aureus RF122] Length = 334 Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 168/324 (51%), Positives = 231/324 (71%), Gaps = 1/324 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++ +++ E+ D L LRP L ++ GQ SNL+VFI+AAK R E LDHVL GPP Sbjct: 3 ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS +VEE Sbjct: 63 GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +RL +Y Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 DLK I+ R A++ G + DE+A E+A RSRGTPR+A RLL+RVRDF +V + I Sbjct: 183 NESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 E AL L +D+ G D +D + + I + + GGPVG++TI+ + E R IED+ EP+ Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327 +IQ+GF++RTPRGR P+A+ H Sbjct: 303 LIQKGFLERTPRGRKATPLAYGHF 326 >gi|312866997|ref|ZP_07727208.1| Holliday junction DNA helicase RuvB [Streptococcus parasanguinis F0405] gi|311097479|gb|EFQ55712.1| Holliday junction DNA helicase RuvB [Streptococcus parasanguinis F0405] Length = 332 Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 173/317 (54%), Positives = 227/317 (71%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 + E+A LRP+ L E+ GQ + LK+FIEAAK R EALDHVL GPPGLGKTT+A Sbjct: 10 MGDEEAVERTLRPQYLHEYIGQDKVKDQLKIFIEAAKLRDEALDHVLLFGPPGLGKTTMA 69 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 V+A ELGVN + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMED Sbjct: 70 FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F +D+M+G G ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE +DL I Sbjct: 130 FYIDIMIGAGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEQDDLTEI 189 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V+R A++ + +T EAA E+++RSRGTPRIA RLL+RVRDFA++ I I D AL Sbjct: 190 VERTAEIFEMEITHEAAEELSLRSRGTPRIANRLLKRVRDFAQIMGNGLIDDTITDKALS 249 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 L +D G D +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309 Query: 312 RTPRGRLLMPIAWQHLG 328 RT GR+ A++HLG Sbjct: 310 RTRTGRVATRKAYEHLG 326 >gi|310829218|ref|YP_003961575.1| Holliday junction DNA helicase RuvB [Eubacterium limosum KIST612] gi|308740952|gb|ADO38612.1| Holliday junction DNA helicase RuvB [Eubacterium limosum KIST612] Length = 342 Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 170/331 (51%), Positives = 238/331 (71%), Gaps = 3/331 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR +++ ++ D DI LRP+ LE++ GQ + +FI+AA+ R E LDHVL Sbjct: 1 MKDR--IVTSGFTETDIDIERSLRPQRLEDYIGQDRVKRQMAIFIQAAQKRNEPLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A+E+G N ++TSGP I K GDLAA+LT+L++ DVLFIDEIHRL Sbjct: 59 YGPPGLGKTTLANIIAQEMGTNIKTTSGPAIEKPGDLAAILTSLKEGDVLFIDEIHRLQR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMEDF LD+++G+GPSA+S++++L +FTL+ ATTR GLLT PL+DRFG+ R Sbjct: 119 SVEEVLYPAMEDFVLDIIIGKGPSAKSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVQR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L Y +L TI+ R A++ + + ++ A E+++RSRGTPRIA RLL+RVRDFAE+ Sbjct: 179 LELYNQVELATIISRSAEILSVNLDEKGAEELSVRSRGTPRIANRLLKRVRDFAEIEGKG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I E A AL +D G D++D LT I F GGPVGI+T++A + E R+ IE++ Sbjct: 239 VIDLETARTALELFEVDAKGLDEIDRIMLTTIVEKFDGGPVGIDTLAAAIGEERNTIEEV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+IQ G++ RTPRGR++ ++HLG++ Sbjct: 299 YEPYLIQLGYLARTPRGRVITSGGYRHLGLE 329 >gi|300856545|ref|YP_003781529.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528] gi|300436660|gb|ADK16427.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528] Length = 348 Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 169/318 (53%), Positives = 228/318 (71%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N+ ++ + LRP+ L E+ GQ + LK+FIEAA+ R EALDHVL GPPGLGKTTL Sbjct: 10 NIKEDTENEYSLRPKRLNEYIGQKKVKDKLKIFIEAARNRKEALDHVLLYGPPGLGKTTL 69 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+G N + TSGP I +AGDLAA+LT+L D DVLFIDEIHRL+ VEEILYPAME Sbjct: 70 ANIIAVEMGGNLKITSGPAIERAGDLAAILTSLNDMDVLFIDEIHRLNRSVEEILYPAME 129 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+ LD+++G+G +A+S++++L +FTLI ATTRVGLLT PL+DRFG+ + FY ++L Sbjct: 130 DYALDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTAPLRDRFGVLCPMEFYREDELSE 189 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 I+ R A + + + +AA EI RSRGTPRIA RLL+RVRD++EV I + + AAL Sbjct: 190 IIVRSADILKVKIETDAAFEIGKRSRGTPRIANRLLKRVRDYSEVKGNGIIDVKTSQAAL 249 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 + +D GFD +D + L I NF GGPVGIET++ + E D I+D+ EPY++Q+GFI Sbjct: 250 ELMEVDNEGFDSIDNKILKAIIDNFNGGPVGIETLAYFIGEELDTIQDVYEPYLLQKGFI 309 Query: 311 QRTPRGRLLMPIAWQHLG 328 RTPRGR+ A++H Sbjct: 310 IRTPRGRVASDSAYRHFN 327 >gi|256838236|ref|ZP_05543746.1| Holliday junction DNA helicase RuvB [Parabacteroides sp. D13] gi|256739155|gb|EEU52479.1| Holliday junction DNA helicase RuvB [Parabacteroides sp. D13] Length = 345 Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 174/309 (56%), Positives = 227/309 (73%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 ++LRP +L +F+GQ + NLKVF+ AA+ R EALDHVL GPPGLGKTTL+ ++A ELG Sbjct: 25 NVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG 84 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 V F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS IVEE LY AMED+++D+++ Sbjct: 85 VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVID 144 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y++E L IV R A + Sbjct: 145 KGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANIL 204 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 + AA EIA RSRGTPRIA LLRRVRDFA+V I + IA +L L ID+ G Sbjct: 205 NVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNGDIDKAIACFSLEALNIDRYG 264 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 DQ+D + LT I F GGPVG+ TI+ L E +E++ EP++I++GFI+RTPRGR + Sbjct: 265 LDQIDNKLLTTIIDKFQGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV 324 Query: 320 MPIAWQHLG 328 +A+ HLG Sbjct: 325 TDLAYTHLG 333 >gi|255013205|ref|ZP_05285331.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_7] Length = 341 Score = 346 bits (887), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 174/309 (56%), Positives = 227/309 (73%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 ++LRP +L +F+GQ + NLKVF+ AA+ R EALDHVL GPPGLGKTTL+ ++A ELG Sbjct: 21 NVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG 80 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 V F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS IVEE LY AMED+++D+++ Sbjct: 81 VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVID 140 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y++E L IV R A + Sbjct: 141 KGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANIL 200 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 + AA EIA RSRGTPRIA LLRRVRDFA+V I + IA +L L ID+ G Sbjct: 201 NVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNGDIDKAIACFSLEALNIDRYG 260 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 DQ+D + LT I F GGPVG+ TI+ L E +E++ EP++I++GFI+RTPRGR + Sbjct: 261 LDQIDNKLLTTIIDKFQGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV 320 Query: 320 MPIAWQHLG 328 +A+ HLG Sbjct: 321 TDLAYTHLG 329 >gi|49483885|ref|YP_041109.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus MRSA252] gi|57650522|ref|YP_186535.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp. aureus COL] gi|87160402|ref|YP_494292.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195452|ref|YP_500256.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221755|ref|YP_001332577.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus str. Newman] gi|161509867|ref|YP_001575526.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141090|ref|ZP_03565583.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732297|ref|ZP_04866462.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733108|ref|ZP_04867273.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp. aureus TCH130] gi|257428425|ref|ZP_05604823.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus 65-1322] gi|257431063|ref|ZP_05607442.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus subsp. aureus 68-397] gi|257433749|ref|ZP_05610107.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus E1410] gi|257436664|ref|ZP_05612708.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus M876] gi|258450533|ref|ZP_05698595.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A5948] gi|262048630|ref|ZP_06021513.1| holliday junction DNA helicase [Staphylococcus aureus D30] gi|262051291|ref|ZP_06023515.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3] gi|282904221|ref|ZP_06312109.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus C160] gi|282906047|ref|ZP_06313902.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus Btn1260] gi|282908960|ref|ZP_06316778.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911277|ref|ZP_06319079.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914446|ref|ZP_06322232.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus M899] gi|282916909|ref|ZP_06324667.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus D139] gi|282919415|ref|ZP_06327150.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus C427] gi|282920190|ref|ZP_06327915.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9765] gi|282924792|ref|ZP_06332458.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus C101] gi|283770715|ref|ZP_06343607.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus H19] gi|283958401|ref|ZP_06375852.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus A017934/97] gi|284024697|ref|ZP_06379095.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus 132] gi|293503519|ref|ZP_06667366.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus 58-424] gi|293510538|ref|ZP_06669243.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus M809] gi|293537081|ref|ZP_06671761.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus M1015] gi|294848670|ref|ZP_06789416.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9754] gi|295428216|ref|ZP_06820848.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590816|ref|ZP_06949454.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus aureus subsp. aureus MN8] gi|304380762|ref|ZP_07363430.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56749558|sp|Q6GG63|RUVB_STAAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|71153737|sp|Q5HFC2|RUVB_STAAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|97190331|sp|Q2FG86|RUVB_STAA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|123407042|sp|Q2FXT4|RUVB_STAA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|172048927|sp|A6QHI3|RUVB_STAAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189046054|sp|A8Z2G9|RUVB_STAAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|49242014|emb|CAG40712.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|57284708|gb|AAW36802.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus COL] gi|87126376|gb|ABD20890.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203010|gb|ABD30820.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374555|dbj|BAF67815.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus str. Newman] gi|160368676|gb|ABX29647.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724086|gb|EES92815.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728864|gb|EES97593.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp. aureus TCH130] gi|257275266|gb|EEV06753.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus 65-1322] gi|257278266|gb|EEV08908.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus subsp. aureus 68-397] gi|257281842|gb|EEV11979.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus E1410] gi|257284015|gb|EEV14138.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus M876] gi|257861691|gb|EEV84490.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A5948] gi|259160928|gb|EEW45948.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3] gi|259163277|gb|EEW47836.1| holliday junction DNA helicase [Staphylococcus aureus D30] gi|269941126|emb|CBI49512.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus TW20] gi|282313158|gb|EFB43554.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus C101] gi|282317225|gb|EFB47599.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus C427] gi|282319396|gb|EFB49748.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus D139] gi|282321627|gb|EFB51952.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus M899] gi|282324972|gb|EFB55282.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327224|gb|EFB57519.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331339|gb|EFB60853.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus Btn1260] gi|282594538|gb|EFB99523.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9765] gi|282595839|gb|EFC00803.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus C160] gi|283460862|gb|EFC07952.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus H19] gi|283790550|gb|EFC29367.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus A017934/97] gi|290919926|gb|EFD96994.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus M1015] gi|291095185|gb|EFE25450.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus 58-424] gi|291466429|gb|EFF08950.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus M809] gi|294824696|gb|EFG41119.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9754] gi|295128574|gb|EFG58208.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575702|gb|EFH94418.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus aureus subsp. aureus MN8] gi|298694920|gb|ADI98142.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus ED133] gi|302751469|gb|ADL65646.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340699|gb|EFM06631.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437892|gb|ADQ76963.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus aureus subsp. aureus TCH60] gi|315195544|gb|EFU25931.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp. aureus CGS00] gi|315198658|gb|EFU28986.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp. aureus CGS01] gi|320140472|gb|EFW32326.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus MRSA131] gi|320144011|gb|EFW35780.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus MRSA177] gi|323440806|gb|EGA98515.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus O11] gi|323442845|gb|EGB00470.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus O46] gi|329314315|gb|AEB88728.1| Holliday junction ATP-dependent DNA helicase ruvB [Staphylococcus aureus subsp. aureus T0131] gi|329728400|gb|EGG64837.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus 21189] Length = 334 Score = 346 bits (887), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 167/324 (51%), Positives = 232/324 (71%), Gaps = 1/324 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++ +++ E+ D L LRP L ++ GQ SNL+VFI+AAK R E LDHVL GPP Sbjct: 3 ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS +VEE Sbjct: 63 GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +RL +Y Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 DLK I+ R A++ G + +E+A E+A RSRGTPR+A RLL+RVRDF +V + I Sbjct: 183 NESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 E AL L +D+ G D +D + + I + + GGPVG++TI+ + E R IED+ EP+ Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327 +IQ+GF++RTPRGR P+A++H Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326 >gi|15924631|ref|NP_372165.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus Mu50] gi|15927221|ref|NP_374754.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus N315] gi|21283320|ref|NP_646408.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus MW2] gi|49486474|ref|YP_043695.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus MSSA476] gi|148268121|ref|YP_001247064.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus JH9] gi|150394189|ref|YP_001316864.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus JH1] gi|156979959|ref|YP_001442218.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus Mu3] gi|253317208|ref|ZP_04840421.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006426|ref|ZP_05145027.2| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793714|ref|ZP_05642693.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9781] gi|258410987|ref|ZP_05681267.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9763] gi|258420212|ref|ZP_05683167.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9719] gi|258438214|ref|ZP_05689498.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9299] gi|258443677|ref|ZP_05692016.1| Holliday junction DNA helicase B [Staphylococcus aureus A8115] gi|258446884|ref|ZP_05695038.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A6300] gi|258448798|ref|ZP_05696910.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus A6224] gi|258453754|ref|ZP_05701729.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A5937] gi|269203266|ref|YP_003282535.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus ED98] gi|282893145|ref|ZP_06301379.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8117] gi|282928276|ref|ZP_06335881.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A10102] gi|295406762|ref|ZP_06816567.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8819] gi|296275926|ref|ZP_06858433.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus MR1] gi|297207638|ref|ZP_06924073.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911721|ref|ZP_07129164.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus aureus subsp. aureus TCH70] gi|54039579|sp|P66758|RUVB_STAAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|54039580|sp|P66759|RUVB_STAAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|54042207|sp|P66757|RUVB_STAAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|56749511|sp|Q6G8S8|RUVB_STAAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231559|sp|A7X357|RUVB_STAA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189046052|sp|A6U2A9|RUVB_STAA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189046053|sp|A5ITG5|RUVB_STAA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|13701439|dbj|BAB42733.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus N315] gi|14247413|dbj|BAB57803.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|21204760|dbj|BAB95456.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus MW2] gi|49244917|emb|CAG43378.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus MSSA476] gi|147741190|gb|ABQ49488.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus subsp. aureus JH9] gi|149946641|gb|ABR52577.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus JH1] gi|156722094|dbj|BAF78511.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|257787686|gb|EEV26026.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9781] gi|257840137|gb|EEV64601.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9763] gi|257843923|gb|EEV68317.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9719] gi|257848258|gb|EEV72249.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9299] gi|257851083|gb|EEV75026.1| Holliday junction DNA helicase B [Staphylococcus aureus A8115] gi|257854459|gb|EEV77408.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A6300] gi|257858076|gb|EEV80965.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus A6224] gi|257864074|gb|EEV86827.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A5937] gi|262075556|gb|ACY11529.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus ED98] gi|282590083|gb|EFB95165.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A10102] gi|282764463|gb|EFC04589.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8117] gi|285817323|gb|ADC37810.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus 04-02981] gi|294968509|gb|EFG44533.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8819] gi|296887655|gb|EFH26553.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885967|gb|EFK81169.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus aureus subsp. aureus TCH70] gi|312830027|emb|CBX34869.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129926|gb|EFT85916.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp. aureus CGS03] gi|329727375|gb|EGG63831.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus 21172] gi|329733177|gb|EGG69514.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus 21193] Length = 334 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 167/324 (51%), Positives = 232/324 (71%), Gaps = 1/324 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++ +++ E+ D L LRP L ++ GQ SNL+VFI+AAK R E LDHVL GPP Sbjct: 3 ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS +VEE Sbjct: 63 GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +RL +Y Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 DLK I+ R A++ G + +E+A E+A RSRGTPR+A RLL+RVRDF +V + I Sbjct: 183 NESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 E AL L +D+ G D +D + + I + + GGPVG++TI+ + E R IED+ EP+ Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327 +IQ+GF++RTPRGR P+A++H Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326 >gi|332360215|gb|EGJ38029.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK1056] Length = 332 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 168/309 (54%), Positives = 226/309 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI K+GDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL IV+R A++ + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRD+A++ I +I D AL L +D+ G D Sbjct: 200 DITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSINIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|199598073|ref|ZP_03211496.1| Holliday junction DNA helicase B [Lactobacillus rhamnosus HN001] gi|229553781|ref|ZP_04442506.1| crossover junction endoribonuclease subunit B [Lactobacillus rhamnosus LMS2-1] gi|258507748|ref|YP_003170499.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus GG] gi|258538938|ref|YP_003173437.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus Lc 705] gi|199590999|gb|EDY99082.1| Holliday junction DNA helicase B [Lactobacillus rhamnosus HN001] gi|229312855|gb|EEN78828.1| crossover junction endoribonuclease subunit B [Lactobacillus rhamnosus LMS2-1] gi|257147675|emb|CAR86648.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus GG] gi|257150614|emb|CAR89586.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus Lc 705] gi|259649096|dbj|BAI41258.1| holliday junction DNA helicase RuvB [Lactobacillus rhamnosus GG] Length = 348 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 168/312 (53%), Positives = 219/312 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L ++ GQ L V+I AAK R E+LDHVL GPPGLGKTTLA V+A E+GVN Sbjct: 26 LRPRRLAQYIGQDRVKHQLTVYITAAKQREESLDHVLLYGPPGLGKTTLALVIANEMGVN 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP I K GDL ALL L DVLF+DEIHRL IVEE+LY AMEDF +D++VG+G Sbjct: 86 IRTTSGPAIEKPGDLVALLNELRPGDVLFVDEIHRLPKIVEEMLYSAMEDFYIDIVVGQG 145 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A V L FTLI ATTR G+L+ PL+DRFGI + +Y +DL IV+R A + + Sbjct: 146 PTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGISEHMAYYSPDDLSEIVKRSANVFNM 205 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ E A EIA RSRGTPR+A RLL+R+RDFAEVA + + D AL +L +D G D Sbjct: 206 AIDAEGAYEIARRSRGTPRVANRLLKRIRDFAEVAGKSPVDLAMVDHALDQLQVDAQGLD 265 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + LT + R++ GGPVG+ TI+A + E IE++ EPY++Q GF++RTPRGR++ P Sbjct: 266 QIDRKLLTFMIRDYQGGPVGLSTIAANIGEEMATIEEMYEPYLLQIGFLKRTPRGRMVTP 325 Query: 322 IAWQHLGIDIPH 333 + H+G+ +P Sbjct: 326 AGFAHMGMTMPQ 337 >gi|270290976|ref|ZP_06197199.1| Holliday junction DNA helicase RuvB [Pediococcus acidilactici 7_4] gi|270280372|gb|EFA26207.1| Holliday junction DNA helicase RuvB [Pediococcus acidilactici 7_4] Length = 337 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 174/331 (52%), Positives = 229/331 (69%), Gaps = 2/331 (0%) Query: 2 MDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 MD E + S V +QE+A+ LRP+ L ++ GQ + L V+IEAAK R EALDHVL Sbjct: 1 MDDERITSSAVQGAQEEANEQSLRPQNLRQYIGQAQIKHELSVYIEAAKKREEALDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA V+A E+ V R+TSGP I K GDL ALL L+ D+LFIDEIHRL Sbjct: 61 YGPPGLGKTTLAMVIANEMAVQIRTTSGPAIEKPGDLVALLNELQPGDILFIDEIHRLPK 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LY AMEDF +D++VG+GP+A + L FTLI ATTR GLL+ PL+DRFGI Sbjct: 121 VVEEMLYSAMEDFFVDIVVGQGPTAHPIHFPLPPFTLIGATTRAGLLSAPLRDRFGIVEH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 +N+Y +DL IV+R A++ + D+ A EIA RSRGTPRI+ RLL+RVRDFAEV + Sbjct: 181 MNYYTEDDLANIVKRSAEIFKTNIDDQGAHEIARRSRGTPRISNRLLKRVRDFAEVENDA 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I R + +L L +D G DQ D + LT + +GGGPVG+ TI+A + E D I ++ Sbjct: 241 HIDRTLVQTSLKLLQVDDRGLDQTDKKVLTTMIELYGGGPVGLTTIAANIGEEPDTISEM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY++Q GF++RTPRGR++ A+ HLG++ Sbjct: 301 YEPYLLQIGFLKRTPRGRMVTERAYAHLGLE 331 >gi|314933805|ref|ZP_07841170.1| holliday junction DNA helicase RuvB [Staphylococcus caprae C87] gi|313653955|gb|EFS17712.1| holliday junction DNA helicase RuvB [Staphylococcus caprae C87] Length = 334 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 170/328 (51%), Positives = 228/328 (69%), Gaps = 2/328 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD+ ++ + ED+D L LRP L+++ GQ SNL+VFI+AAK R E LDHVL Sbjct: 1 MDKR-MVDQQFHNEDSDFELSLRPTKLKQYIGQTSIKSNLEVFIKAAKLREEPLDHVLLF 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS Sbjct: 60 GPPGLGKTTLSNIIANEMEVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSA 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +RL Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y DLK I+ R A + G + +E+A E+A RSRGTPR+A RLL+RVRDF +V Sbjct: 180 EYYNENDLKEIITRTADVLGTGIDEESALELARRSRGTPRVANRLLKRVRDFQQVNEDDQ 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I E AL L +DK G D +D + + I + GGPVG++TI+ + E R IED+ Sbjct: 240 IYIETTKRALQLLQVDKEGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERITIEDVY 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EP++IQ+GF++RTPRGR P A+ H Sbjct: 300 EPFLIQKGFLERTPRGRKATPFAYVHFN 327 >gi|324990050|gb|EGC21991.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK353] gi|324995783|gb|EGC27694.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK678] gi|325686360|gb|EGD28390.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK72] gi|332363661|gb|EGJ41441.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK49] Length = 332 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 168/309 (54%), Positives = 225/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI K+GDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL IV+R A++ + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRD+A++ I +I D AL L +D+ G D Sbjct: 200 DITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|313897405|ref|ZP_07830948.1| Holliday junction DNA helicase RuvB [Clostridium sp. HGF2] gi|312957775|gb|EFR39400.1| Holliday junction DNA helicase RuvB [Clostridium sp. HGF2] Length = 337 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 172/322 (53%), Positives = 232/322 (72%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N SQ + + LRP++L E+ GQ + NL VFIEAAK R EALDHVL GPPGLGKTTL Sbjct: 7 NESQSMDEEASLRPQSLREYIGQRQLKENLSVFIEAAKQRNEALDHVLLYGPPGLGKTTL 66 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + ++A E+G + ++TSGP I K GDLAA+L+ LE DVLFIDEIHRL VEEILYPAME Sbjct: 67 SYILANEMGGSIKTTSGPSIEKGGDLAAILSTLEPGDVLFIDEIHRLPKQVEEILYPAME 126 Query: 131 DFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 D+ +D++VG + + RS+++ L FTL+ ATTR G LT PL+DRFGI +L FYE+ +L+ Sbjct: 127 DYCIDIVVGKDSATTRSIRLELPPFTLVGATTRAGDLTAPLRDRFGIVSQLEFYELAELQ 186 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 I+ R +++ + +EA EIA+RSRGTPRIA RL RRVRDFA V + I+++IA+ A Sbjct: 187 QIISRTSRVMDTEIEEEAVLEIALRSRGTPRIANRLFRRVRDFATVMNDGIISKQIAEMA 246 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L +L +D +G D +D +YL I F GGPVG+E +S+ + E +ED+ EPY++Q GF Sbjct: 247 LDKLKVDHLGLDNVDHKYLKGIIERFKGGPVGLEALSSSIGEETMTLEDVYEPYLLQIGF 306 Query: 310 IQRTPRGRLLMPIAWQHLGIDI 331 I RTPRGR++ A++HLG D+ Sbjct: 307 INRTPRGRVVTEKAYRHLGYDL 328 >gi|329960656|ref|ZP_08298999.1| Holliday junction DNA helicase RuvB [Bacteroides fluxus YIT 12057] gi|328532529|gb|EGF59323.1| Holliday junction DNA helicase RuvB [Bacteroides fluxus YIT 12057] Length = 345 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 170/307 (55%), Positives = 227/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F+GQ + NL++F++AA+ R EALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 25 LRPLNFEDFSGQDKVVDNLRIFVKAARLREEALDHVLLHGPPGLGKTTLSNIIANELGVG 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 85 FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L I++R A + + Sbjct: 145 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLSGIIRRSASILDV 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + AA EIA RSRGTPRIA LLRRVRDFA+V + +I EIA AL L IDK G D Sbjct: 205 PCSARAAAEIAGRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIAQFALEALNIDKYGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 265 EIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFLKRTPRGREVTE 324 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 325 LAYKHLG 331 >gi|312892031|ref|ZP_07751532.1| Holliday junction DNA helicase RuvB [Mucilaginibacter paludis DSM 18603] gi|311295528|gb|EFQ72696.1| Holliday junction DNA helicase RuvB [Mucilaginibacter paludis DSM 18603] Length = 340 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 177/319 (55%), Positives = 228/319 (71%), Gaps = 1/319 (0%) Query: 11 NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N+S + DI +LRP+ E+FTGQ + +NLK+F++AAK R EALDHVL GPPGLGKTT Sbjct: 11 NLSPAERDIEKVLRPQAFEDFTGQHKILANLKIFVQAAKLRGEALDHVLLHGPPGLGKTT 70 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 L+ ++A E+G + TSGPV+ K GDLA LLTNLE D+LFIDEIHRLS +VEE LY AM Sbjct: 71 LSHIIANEMGSGIKITSGPVLDKPGDLAGLLTNLESGDILFIDEIHRLSPLVEEYLYSAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 EDF++D+M+ GP+ARSV+I+L+ FTL+ ATTR GLLT PL+ RFGI RL +Y+ + L Sbjct: 131 EDFKIDIMLESGPNARSVQISLNPFTLVGATTRSGLLTAPLRARFGINSRLEYYDAKLLT 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 TIV R A + + DEAA EIA RSRGTPRIA LLRR RDFA+V I EIA A Sbjct: 191 TIVLRSASILKTPIRDEAAYEIARRSRGTPRIANSLLRRTRDFAQVKGNGQIDTEIARYA 250 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L +D+ G D++D + L I F GGPVG++TI+ + E IE++ EP++IQ+GF Sbjct: 251 LNALNVDEHGLDEMDNKILLTIIDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQEGF 310 Query: 310 IQRTPRGRLLMPIAWQHLG 328 + RT RGR A++HLG Sbjct: 311 LMRTSRGREATDNAYKHLG 329 >gi|168187974|ref|ZP_02622609.1| holliday junction DNA helicase RuvB [Clostridium botulinum C str. Eklund] gi|169294185|gb|EDS76318.1| holliday junction DNA helicase RuvB [Clostridium botulinum C str. Eklund] Length = 337 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 172/324 (53%), Positives = 233/324 (71%), Gaps = 1/324 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++S + +ED D+ LRP L E+ GQ + L +F +AAK R EALDHVL GPP Sbjct: 3 ERMISASYKKEDFDVEHSLRPEKLSEYIGQDKVKEKLSIFTKAAKMRKEALDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++ARE+G + TSGP I + GD+AA+LT+L D DVLFIDEIHRL+ VEE Sbjct: 63 GLGKTTLANIIAREMGGTLKVTSGPAIERPGDMAAILTSLNDYDVLFIDEIHRLNRTVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 I+YPAMED LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+ + FY Sbjct: 123 IMYPAMEDNVLDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVLSAMEFY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++LK I+ R +K+ G+ T++AA EIA RSRGTPRIA RLL+RVRD+ +V I Sbjct: 183 NEDELKEIILRSSKILGVVTTEDAAFEIARRSRGTPRIANRLLKRVRDYCDVKGDGVIDI 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 I+ AL L ID+ GFD++D + L I NF GGPVG+ET++ + E D I+D+ EPY Sbjct: 243 NISKNALNLLEIDEEGFDRIDNKILEAIIDNFKGGPVGLETLAYFIGEELDTIQDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327 ++Q+GFI R PRGR A++HL Sbjct: 303 LLQKGFIVRMPRGRKATEKAYRHL 326 >gi|312134959|ref|YP_004002297.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor owensensis OL] gi|311775010|gb|ADQ04497.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor owensensis OL] Length = 338 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 166/321 (51%), Positives = 225/321 (70%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 LL S ED LRP+TLE++ GQ + +K+FIEAAK R E LDHVL GPPGLG Sbjct: 4 LLDNKFSVEDVHEESLRPKTLEDYIGQQKVKEKVKIFIEAAKKRKEPLDHVLLYGPPGLG 63 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+ +EE+LY Sbjct: 64 KTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEVLY 123 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 PAMED ++D+++G+GPSA+++++ L FTLI ATTR GLL++PL+DRFGI RL++Y +E Sbjct: 124 PAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYTVE 183 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L IV R A + + EA EIA RSRGTPR+A RLLRR+RD+A V + +IT E+A Sbjct: 184 ELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKYTGSITYEVA 243 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 L +D+ G D +D L I F GGPVG+ TI+A + E IED+ EPY+IQ Sbjct: 244 KNGLEMFEVDEYGLDLVDRNILEAIVYKFSGGPVGLSTIAAAIGEDEGTIEDIYEPYLIQ 303 Query: 307 QGFIQRTPRGRLLMPIAWQHL 327 +GF+ +T RGR+ A H+ Sbjct: 304 EGFLVKTARGRVATQKAINHI 324 >gi|320108574|ref|YP_004184164.1| Holliday junction DNA helicase RuvB [Terriglobus saanensis SP1PR4] gi|319927095|gb|ADV84170.1| Holliday junction DNA helicase RuvB [Terriglobus saanensis SP1PR4] Length = 355 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 180/329 (54%), Positives = 241/329 (73%), Gaps = 1/329 (0%) Query: 7 LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S + + +DA L LRP L EF GQ +A L + +EAAKAR EALDHVL GPPGL Sbjct: 23 IVSASTTDDDAAFELKLRPHHLREFIGQEKAKEQLAIALEAAKARGEALDHVLLFGPPGL 82 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A ELGV ++ TSGP + GDL A+LTNL +R VLF+DEIHRL ++EE L Sbjct: 83 GKTTLATIIANELGVGYQQTSGPALQIQGDLTAILTNLRERQVLFLDEIHRLQPVLEEKL 142 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y A+ED+QLD+++G+GPSAR+ + + FT +AATTR GLL++PL+ RFGI +RL FY Sbjct: 143 YTALEDYQLDIIIGQGPSARTHVMEIRPFTFVAATTRPGLLSSPLRSRFGILLRLEFYTD 202 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++L+ IV+R A++ G+ + + A EIAMRSRGTPRIA RLLRRVRDFAEV TI RE Sbjct: 203 DELRYIVERSAEVIGVTIDQDGAAEIAMRSRGTPRIANRLLRRVRDFAEVRANGTIDRET 262 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +D GFD+LD R L I + GGPVG+ T++A L+E DA+E++ EP++I Sbjct: 263 AQKALAMLEVDAHGFDELDRRLLRTIIEKYDGGPVGLNTLAAALAEEEDALEEVYEPFLI 322 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 Q GF+ RTPRGR+ +A++HLGI++P + Sbjct: 323 QIGFLDRTPRGRVATRLAYEHLGIEMPRK 351 >gi|329767085|ref|ZP_08258613.1| Holliday junction ATP-dependent DNA helicase ruvB [Gemella haemolysans M341] gi|328837810|gb|EGF87435.1| Holliday junction ATP-dependent DNA helicase ruvB [Gemella haemolysans M341] Length = 333 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 172/329 (52%), Positives = 232/329 (70%), Gaps = 1/329 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR S+N +E + SL RP+ L ++ GQ + NLK+FIEAAK R E LDH L Sbjct: 1 MEDRMVSTSQNFGEEREEQSL-RPKFLSQYIGQEQIKRNLKIFIEAAKLRGEVLDHCLLY 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+ V + TSGP I K+GDLAA+LT+LE DVLFIDEIHR+S Sbjct: 60 GPPGLGKTTLATIIANEMEVGIKYTSGPAIEKSGDLAAILTSLEPGDVLFIDEIHRISRS 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILY AMEDF LD+++G+G +RS++I L FTL+ ATTR G LT PL+DRFG+ RL Sbjct: 120 IEEILYSAMEDFYLDIVIGKGEESRSIRIELPPFTLVGATTRAGALTAPLRDRFGVHCRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY I +L+ I++R + + + +E++ EIAMRSRGTPRIA RLL+RVRDFA+V + Sbjct: 180 EFYTISELQNIIERTSDIFECDIDEESSYEIAMRSRGTPRIANRLLKRVRDFAQVKNDGV 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +++A +L L +D G D +D + L + + + G VG+ETI+ + E IED+ Sbjct: 240 IAKDLAVESLDLLQVDAKGLDNIDYKILECLIKRYDGRAVGLETIAVTIGEESITIEDVY 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++++GFI+RTPRGR P A+QHLGI Sbjct: 300 EPYLVKEGFIERTPRGRRATPKAYQHLGI 328 >gi|188995346|ref|YP_001929598.1| Holliday junction DNA helicase RuvB [Porphyromonas gingivalis ATCC 33277] gi|188595026|dbj|BAG34001.1| holliday junction DNA helicase RuvB [Porphyromonas gingivalis ATCC 33277] Length = 364 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 172/314 (54%), Positives = 227/314 (72%), Gaps = 1/314 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP T + F+GQ + NL +F+ AA+ R EALDH L GPPGLGKTTL+ ++A ELGV Sbjct: 46 LRPLTFDSFSGQDKVVENLSIFVAAARLRGEALDHTLLHGPPGLGKTTLSNIIANELGVG 105 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ K GDLA LLT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 106 LKITSGPVLDKPGDLAGLLTSLESNDVLFIDEIHRLSPLVEEYLYSAMEDYRIDIMLDKG 165 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++INLS FTL+ ATTR GLLT PL+ RFGI + L +Y++ + IV+R A++ + Sbjct: 166 PSARSIQINLSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDVHTITGIVERSARILEV 225 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + +AA EIA RSRGTPRIA LLRRVRDFA+V + I + IA AL L ID+ G D Sbjct: 226 SCSHDAAIEIAGRSRGTPRIANALLRRVRDFAQVKGSGAIDKPIACYALEALNIDRYGLD 285 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+ TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 286 NVDHKLLATIIDKFAGGPVGLSTIATALGEDPGTIEEVYEPFLIKEGFLKRTPRGREVTE 345 Query: 322 IAWQHLGIDI-PHR 334 +A+ HLG + PHR Sbjct: 346 LAYTHLGRNPRPHR 359 >gi|297245655|ref|ZP_06929520.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8796] gi|297177306|gb|EFH36558.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8796] Length = 334 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 167/324 (51%), Positives = 232/324 (71%), Gaps = 1/324 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++ +++ E+ D L LRP L ++ GQ SNL+VFI+AAK R E LDHVL GPP Sbjct: 3 ERMVDQSMHSEEIDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS +VEE Sbjct: 63 GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +RL +Y Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 DLK I+ R A++ G + +E+A E+A RSRGTPR+A RLL+RVRDF +V + I Sbjct: 183 NESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 E AL L +D+ G D +D + + I + + GGPVG++TI+ + E R IED+ EP+ Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327 +IQ+GF++RTPRGR P+A++H Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326 >gi|78777875|ref|YP_394190.1| Holliday junction DNA helicase B [Sulfurimonas denitrificans DSM 1251] gi|97190419|sp|Q30PX6|RUVB_SULDN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|78498415|gb|ABB44955.1| Holliday junction DNA helicase subunit RuvB [Sulfurimonas denitrificans DSM 1251] Length = 337 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 172/331 (51%), Positives = 234/331 (70%), Gaps = 2/331 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M R + R S+E +++L RP E+ GQ + NL VFIEA+K RAEALDHVLF G Sbjct: 1 MQRLVEIERFDSEESVEVTL-RPSAWNEYIGQEQIKKNLGVFIEASKKRAEALDHVLFYG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+ N + T+ P+I K+GDLAA+LTNLE+ DVLFIDEIHRLS V Sbjct: 60 PPGLGKTTLALIIANEMNANIKVTAAPMIEKSGDLAAILTNLEEGDVLFIDEIHRLSPAV 119 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILY +MEDF++D+++G GP+A+++KI+L RFTLI ATTR G+L+NPL+DRFG+ R+ Sbjct: 120 EEILYSSMEDFRIDIIIGSGPAAQTLKIDLPRFTLIGATTRAGMLSNPLRDRFGMNFRMQ 179 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY E+L I+ + + + DEA EIA RSRGTPRIA RLLRRVRDFA+VA+ K I Sbjct: 180 FYSPEELSKIISQASNKLNKKIADEACSEIAKRSRGTPRIALRLLRRVRDFADVANEKDI 239 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 A AL L I+ GFD++D++ L ++ G +G+ TI+A LSE +ED++E Sbjct: 240 LHSRAQYALDELGINSYGFDEMDIKLLNLLV-GANGRAMGLSTIAAALSEDEGTVEDVLE 298 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY+I G+++RT +GR P ++ L + +P Sbjct: 299 PYLIANGYLERTAKGRKATPSTYKILNVTMP 329 >gi|300087843|ref|YP_003758365.1| Holliday junction DNA helicase RuvB [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527576|gb|ADJ26044.1| Holliday junction DNA helicase RuvB [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 346 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 167/328 (50%), Positives = 235/328 (71%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M+ + S++V++E+ + LRP++L++F GQ NL + +EAA+ R EALDHVL G Sbjct: 6 MNERIISSQSVNEEEGAENSLRPKSLDDFIGQERLRDNLGITMEAARGRGEALDHVLLYG 65 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++AR++GVN R T+GP + + GDLAA+LT+L+ DVLFIDEIHRL V Sbjct: 66 PPGLGKTTLAHIIARDMGVNIRITAGPAVERPGDLAAILTSLQSNDVLFIDEIHRLGRTV 125 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMEDF LD+++G+GP A++++I L FTLI ATTR +L++PL+DRFG RL Sbjct: 126 EEILYPAMEDFALDIVIGKGPGAKNLRIKLPHFTLIGATTRYAMLSSPLRDRFGSVYRLE 185 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y ++++I++R A++ + D EIA R+RGTPR+A RLL+RVRD+A+V +I Sbjct: 186 YYNDSEIESIIRRSARILDVKADDAGLREIACRARGTPRVANRLLKRVRDYAQVKENGSI 245 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 +IA AAL RL +D +G D +D L I F GGPVG+ET++A +SE D I D+ E Sbjct: 246 DADIAGAALGRLEVDGVGLDSIDHHLLRTIIEKFSGGPVGLETLAAAISEDSDTIMDIYE 305 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 PY++Q GF++RT RGR+ A+ HL I Sbjct: 306 PYLMQLGFLERTARGRVATRAAYDHLQI 333 >gi|239637554|ref|ZP_04678526.1| holliday junction DNA helicase RuvB [Staphylococcus warneri L37603] gi|239596772|gb|EEQ79297.1| holliday junction DNA helicase RuvB [Staphylococcus warneri L37603] Length = 334 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 168/325 (51%), Positives = 230/325 (70%), Gaps = 1/325 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++ ++ E++D L LRP L+++ GQ SNL+VFI+AAK R E LDHVL GPP Sbjct: 3 ERMVDQSAHNEESDFELSLRPTKLKQYIGQSSIKSNLEVFIKAAKLREEPLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS +VEE Sbjct: 63 GLGKTTLSNIIANEMDVNIRTVSGPSLERPGDLAAILSGLKPGDVLFIDEIHRLSSVVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +RL +Y Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 DLK I+ R A++ G + +E+A E+A RSRGTPR+A RLL+RVRDF +V I Sbjct: 183 NEADLKEIIIRTAEVLGTDIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDDQIYI 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 E AL L +D G D +D + + I + GGPVG++TI+ + E R IED+ EP+ Sbjct: 243 ETTKRALKLLQVDDYGLDYIDHKMMNCILNQYKGGPVGLDTIAVSIGEERITIEDVYEPF 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328 +IQ+GF++RTPRGR P+A +H G Sbjct: 303 LIQKGFLERTPRGRKATPLAHEHFG 327 >gi|332364921|gb|EGJ42689.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK355] Length = 332 Score = 345 bits (885), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 167/309 (54%), Positives = 226/309 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI K+GDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL IV+R A++ + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA ++A+RSRGTPRIA RLL+RVRD+A++ I +I D AL L +D+ G D Sbjct: 200 DITHEAAKDLALRSRGTPRIANRLLKRVRDYAQIVGNGLIDDKITDQALSMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|157150805|ref|YP_001449430.1| Holliday junction DNA helicase RuvB [Streptococcus gordonii str. Challis substr. CH1] gi|262281747|ref|ZP_06059516.1| Holliday junction DNA helicase RuvB [Streptococcus sp. 2_1_36FAA] gi|189046055|sp|A8AUH0|RUVB_STRGC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157075599|gb|ABV10282.1| Holliday junction DNA helicase RuvB [Streptococcus gordonii str. Challis substr. CH1] gi|262262201|gb|EEY80898.1| Holliday junction DNA helicase RuvB [Streptococcus sp. 2_1_36FAA] Length = 332 Score = 345 bits (885), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 223/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHALLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 IKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 + RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL IV+R A++ + Sbjct: 140 DANRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEEADLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRD+A++ I I D AL L +D G D Sbjct: 200 DITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDETITDQALSMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|282878862|ref|ZP_06287629.1| Holliday junction DNA helicase RuvB [Prevotella buccalis ATCC 35310] gi|281299070|gb|EFA91472.1| Holliday junction DNA helicase RuvB [Prevotella buccalis ATCC 35310] Length = 344 Score = 345 bits (885), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 168/310 (54%), Positives = 225/310 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +F+GQ + NL++F+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLKFNDFSGQPKVVENLQIFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKLTSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y E L+ I++R A + + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINMHLEYYAPETLQKIIRRSANILNV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA EIA RSRGTPRIA LLRRVRDFA+V +I IA AL L ID+ G D Sbjct: 203 PIDEDAAYEIARRSRGTPRIANALLRRVRDFAQVKGNGSINTRIAQFALQALNIDQYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR+ Sbjct: 263 EIDNKILLTIIDKFRGGPVGLSTIATAIGEDTGTVEEVYEPFLIMEGFIKRTPRGRMATH 322 Query: 322 IAWQHLGIDI 331 +A++HLG D+ Sbjct: 323 LAYEHLGRDL 332 >gi|282852796|ref|ZP_06262138.1| Holliday junction DNA helicase RuvB [Lactobacillus gasseri 224-1] gi|282556538|gb|EFB62158.1| Holliday junction DNA helicase RuvB [Lactobacillus gasseri 224-1] Length = 336 Score = 345 bits (885), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 175/329 (53%), Positives = 230/329 (69%), Gaps = 1/329 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M D E ++ ++ED I L LRP+ L ++ GQ + S +K++I+AAK R EALDHVL Sbjct: 1 MNDEERIIGAESNEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKQRDEALDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L DVLFIDEIHRL+ Sbjct: 61 YGPPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAK 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LY AMEDF +D++VGEG + +V + L FTLI ATTR G L+ PL+DRFGI Sbjct: 121 PVEEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y I+DL+ I+QR + + + EAA E+A RSRGTPR+A RLL+RVRDFAEV + Sbjct: 181 MQYYSIDDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEE 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ +L L +D G DQ D + L M+ N+GGGPVGI+TI+A + E D IE++ Sbjct: 241 AISLATTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EPY++Q+GFI RTPRGR + A+ LG Sbjct: 301 YEPYLLQKGFITRTPRGRSVTQKAYLQLG 329 >gi|319651694|ref|ZP_08005821.1| Holliday junction DNA helicase B [Bacillus sp. 2_A_57_CT2] gi|317396761|gb|EFV77472.1| Holliday junction DNA helicase B [Bacillus sp. 2_A_57_CT2] Length = 333 Score = 345 bits (884), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 169/311 (54%), Positives = 227/311 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+++ GQ + NL++FI+AA+ R E LDHVL GPPGLGKTTLA ++A E+GVN Sbjct: 21 LRPQTLKQYIGQDKVKQNLEIFIKAARIREETLDHVLLYGPPGLGKTTLAAIIANEMGVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+T+GP I + GDLAA+LT LE DVLFIDEIHRL +EE+LYPAMEDF LD+++G+G Sbjct: 81 IRTTAGPAIERPGDLAAILTALEPGDVLFIDEIHRLPRSIEEVLYPAMEDFCLDIVIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV+++L FTL+ ATTR G L+ PL+DRFG+ RL +Y E L IV R A++ Sbjct: 141 PSARSVRLDLPPFTLVGATTRAGSLSAPLRDRFGVLSRLEYYSEEQLTDIVVRTAEVLDT 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA E+A RSRGTPRIA RLLRRVRDFA+V + +A AL L +D++G D Sbjct: 201 GIDLKAANEVARRSRGTPRIANRLLRRVRDFAQVKSDGQVEETLAKEALELLQVDRLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+ETI+A + E IED+ EPY++Q GF+QRTPRGR++ Sbjct: 261 HIDHKLLRGIIEKFRGGPVGLETIAATIGEEAHTIEDVYEPYLLQIGFLQRTPRGRIVTD 320 Query: 322 IAWQHLGIDIP 332 + ++H +++P Sbjct: 321 LVYRHFQMEVP 331 >gi|332668034|ref|YP_004450822.1| Holliday junction ATP-dependent DNA helicase ruvB [Haliscomenobacter hydrossis DSM 1100] gi|332336848|gb|AEE53949.1| Holliday junction ATP-dependent DNA helicase ruvB [Haliscomenobacter hydrossis DSM 1100] Length = 342 Score = 345 bits (884), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 171/311 (54%), Positives = 221/311 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEEF+GQ NLKVFI AAK R +ALDHVL GPPGLGKTTL+ ++A EL Sbjct: 24 LRPKALEEFSGQPRIVDNLKVFITAAKQRGDALDHVLLHGPPGLGKTTLSHIIALELETG 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + +SGPV+ K GDLA LLTNL DVLFIDEIHRL+ +VEE LY AMED+++D+M+ G Sbjct: 84 LKMSSGPVLEKPGDLAGLLTNLNSGDVLFIDEIHRLNTVVEEYLYSAMEDYRIDIMIDSG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS++I L+ FTL+ ATTR+GLLT P++ RFGI L++Y++ LK I+ R A + GL Sbjct: 144 PNARSIQITLNPFTLVGATTRMGLLTAPMRARFGINCHLDYYDVLTLKKIIHRSADILGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E A EIA RSRGTPRIA LLRRVRDFA+V I IA AL L +D+ G D Sbjct: 204 EIFEEGASEIARRSRGTPRIANALLRRVRDFAQVKGDGRIDEAIAKYALEALNVDEYGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L+ I F GGPVGI TI+ + E IE++ EP++I +GF+QRTPRGR Sbjct: 264 EMDNKILSTIIHKFKGGPVGISTIATAIGEEAGTIEEVHEPFLIMEGFLQRTPRGREATE 323 Query: 322 IAWQHLGIDIP 332 A++HLG+ P Sbjct: 324 KAYRHLGVVPP 334 >gi|319892694|ref|YP_004149569.1| Holliday junction DNA helicase RuvB [Staphylococcus pseudintermedius HKU10-03] gi|317162390|gb|ADV05933.1| Holliday junction DNA helicase RuvB [Staphylococcus pseudintermedius HKU10-03] gi|323464268|gb|ADX76421.1| Holliday junction DNA helicase RuvB [Staphylococcus pseudintermedius ED99] Length = 332 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 172/332 (51%), Positives = 230/332 (69%), Gaps = 1/332 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MDR+ ++ + ++ L LRP L ++ GQ SNL VFI+AAK R E LDHVL Sbjct: 1 MDRDRMMDGHEQVDEHTFELSLRPERLRQYIGQSTIKSNLDVFIQAAKIREEPLDHVLLF 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ ++A E+ VN R+ SGP I + GDLAA+LT L+ DVLFIDEIHRLS + Sbjct: 61 GPPGLGKTTLSHIIANEMDVNLRTVSGPSIERPGDLAAILTALQPGDVLFIDEIHRLSSV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD++VG+G ARS++I+L FTL+ ATTR G LT+PL+DRFG+ +RL Sbjct: 121 VEEVLYPAMEDFFLDIIVGKGDEARSIRIDLPPFTLVGATTRAGSLTSPLRDRFGVHLRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y E+L I+ R A++ G A+ +E+A EIA RSRGTPRIA RLL+R+RDF +V Sbjct: 181 EYYTEEELTQIIIRTAEVLGTAIDEESAFEIAKRSRGTPRIANRLLKRIRDFQQVKQDDM 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I E AL L +D G D +D + + I + GGPVG++TI+ + E R IED+ Sbjct: 241 IYIETTKHALKLLQVDDEGLDYIDHKMMACIIEQYRGGPVGLDTIAVSIGEERVTIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EP++IQ+GF++RTPRGR P A++H P Sbjct: 301 EPFLIQKGFLERTPRGRKATPYAYEHFKYTSP 332 >gi|295398600|ref|ZP_06808632.1| crossover junction ATP-dependent DNA helicase RuvB [Aerococcus viridans ATCC 11563] gi|294973201|gb|EFG48996.1| crossover junction ATP-dependent DNA helicase RuvB [Aerococcus viridans ATCC 11563] Length = 353 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 173/309 (55%), Positives = 220/309 (71%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ E L ++I+AA+ R EALDHVL GPPGLGKTTLA ++A E+GVN Sbjct: 39 LRPKFLREYIGQAELKEELAIYIQAAENRDEALDHVLLYGPPGLGKTTLANIIANEMGVN 98 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I K GDL LL L DVLFIDEIHRL +VEE+LY AMED+Q+D++VG+ Sbjct: 99 IQTTSGPAIEKTGDLLVLLNELSAGDVLFIDEIHRLPRVVEEMLYSAMEDYQVDIIVGQD 158 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A V L FTLI ATTR G L++PL+ RFGI L +Y +++L TIV+R A+L + Sbjct: 159 EGAHPVHFPLPPFTLIGATTRPGALSSPLRHRFGIVQHLRYYTVDELATIVERTARLFEV 218 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADAALLRLAIDKMGF 260 + D+AA EI MRSRGTPRIA RLL+RVRDFA+V H I I D AL L +D+ G Sbjct: 219 PIKDQAAKEIGMRSRGTPRIANRLLKRVRDFAQVYHEDGLIDDPITDKALSILKVDQAGL 278 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D+ D + L +I R +GGGPVG+ TI+A +SE IED+ EP++IQ GF+QRTPRGRL+ Sbjct: 279 DETDRKILDVIIRYYGGGPVGLSTIAANISEEATTIEDMYEPFLIQNGFLQRTPRGRLVT 338 Query: 321 PIAWQHLGI 329 P A+ HLGI Sbjct: 339 PKAYDHLGI 347 >gi|268318975|ref|YP_003292631.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus johnsonii FI9785] gi|262397350|emb|CAX66364.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus johnsonii FI9785] Length = 336 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 175/329 (53%), Positives = 230/329 (69%), Gaps = 1/329 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M + E ++ S+ED I L LRP+ L ++ GQ + S +K++I+AAK R EALDHVL Sbjct: 1 MNEEERIIGAESSEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKQRDEALDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L DVLFIDEIHRL+ Sbjct: 61 YGPPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAK 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LY AMEDF +D++VGEG + +V + L FTLI ATTR G L+ PL+DRFGI Sbjct: 121 PVEEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y +EDL+ I+QR + + + EAA E+A RSRGTPR+A RLL+RVRDFAEV + Sbjct: 181 MQYYSVEDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEE 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ +L L +D G DQ D + L M+ N+GGGPVGI+TI+A + E D IE++ Sbjct: 241 AISLVTTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EPY++Q+GFI RTPRGR + A+ LG Sbjct: 301 YEPYLLQKGFITRTPRGRSVTQKAYLQLG 329 >gi|319400967|gb|EFV89186.1| holliday junction DNA helicase RuvB [Staphylococcus epidermidis FRI909] Length = 334 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 169/328 (51%), Positives = 230/328 (70%), Gaps = 2/328 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD+ ++ + ED D+ L LRP L+++ GQ SNL+VFI+AAK R E LDHVL Sbjct: 1 MDKR-MVDQEFHNEDTDLELSLRPTQLKQYIGQSSIKSNLEVFIKAAKLRQEPLDHVLLF 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS + Sbjct: 60 GPPGLGKTTLSNIIANEMNVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +RL Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y DLK I+ R A++ G + E+A E+A RSRGTPRIA RLL+RVRDF +V Sbjct: 180 EYYNENDLKEIITRTAEVLGTDIDKESALELARRSRGTPRIANRLLKRVRDFQQVNEDDQ 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I E AL L +D+ G D +D + + I + GGPVG++TI+ + E R IED+ Sbjct: 240 IYIETTKRALQLLQVDQQGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERVTIEDVY 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EP++IQ+GF++RTPRGR +A++H Sbjct: 300 EPFLIQKGFLERTPRGRKATALAFEHFN 327 >gi|171778365|ref|ZP_02919544.1| hypothetical protein STRINF_00395 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282896|gb|EDT48320.1| hypothetical protein STRINF_00395 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 332 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 167/307 (54%), Positives = 222/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + + LK+FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGNG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y ++DL IV+R A + + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAVDDLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPRIA RLL+RVRD+A++ IT++I D AL L +D G D Sbjct: 200 EIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIITKDITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATA 319 Query: 322 IAWQHLG 328 A+ HLG Sbjct: 320 KAYDHLG 326 >gi|34540304|ref|NP_904783.1| Holliday junction DNA helicase RuvB [Porphyromonas gingivalis W83] gi|44888376|sp|Q7MWU9|RUVB_PORGI RecName: Full=Holliday junction DNA helicase ruvB gi|34396616|gb|AAQ65682.1| Holliday junction DNA helicase RuvB [Porphyromonas gingivalis W83] Length = 343 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 171/314 (54%), Positives = 227/314 (72%), Gaps = 1/314 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP T + F+GQ + NL +F+ AA+ R EALDH L GPPGLGKTTL+ ++A ELGV Sbjct: 25 LRPLTFDSFSGQDKVVENLSIFVAAARLRGEALDHTLLHGPPGLGKTTLSNIIANELGVG 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ K GDLA LL++LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 85 LKITSGPVLDKPGDLAGLLSSLESNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMLDKG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++INLS FTL+ ATTR GLLT PL+ RFGI + L +Y++ + IV+R A++ + Sbjct: 145 PSARSIQINLSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDVHTITGIVERSARILEV 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + +AA EIA RSRGTPRIA LLRRVRDFA+V + I + IA AL L ID+ G D Sbjct: 205 SCSHDAAVEIAGRSRGTPRIANALLRRVRDFAQVKGSGAIDKPIACYALEALNIDRYGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I F GGPVG+ TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 265 NVDHKLLATIIDKFAGGPVGLSTIATALGEDPGTIEEVYEPFLIKEGFLKRTPRGREVTE 324 Query: 322 IAWQHLGIDI-PHR 334 +A+ HLG + PHR Sbjct: 325 LAYTHLGRNPRPHR 338 >gi|304385247|ref|ZP_07367592.1| crossover junction ATP-dependent DNA helicase RuvB [Pediococcus acidilactici DSM 20284] gi|304328454|gb|EFL95675.1| crossover junction ATP-dependent DNA helicase RuvB [Pediococcus acidilactici DSM 20284] Length = 337 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 174/331 (52%), Positives = 229/331 (69%), Gaps = 2/331 (0%) Query: 2 MDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 MD E + S V +QE+A+ LRP+ L ++ GQ + L V+IEAAK R EALDHVL Sbjct: 1 MDDERITSSAVQGAQEEANEQSLRPQNLRQYIGQAQIKHELSVYIEAAKKREEALDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA V+A E+ V R+TSGP I K GDL ALL L+ D+LFIDEIHRL Sbjct: 61 YGPPGLGKTTLAMVIANEMAVQIRTTSGPAIEKPGDLVALLNELQPGDILFIDEIHRLPK 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LY AMEDF +D++VG+GP+A + L FTLI ATTR GLL+ PL+DRFGI Sbjct: 121 VVEEMLYSAMEDFFVDIVVGQGPTAHPIHFPLPPFTLIGATTRAGLLSAPLRDRFGIVEH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 +N+Y +DL IV+R A++ + D+ A EIA RSRGTPRI+ RLL+RVRDFAEV + Sbjct: 181 MNYYTEDDLANIVKRSAEIFKTNIDDQGAHEIARRSRGTPRISNRLLKRVRDFAEVENDA 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I R + +L L +D G DQ D + LT + +GGGPVG+ TI+A + E D I ++ Sbjct: 241 HIDRTLVRTSLKLLQVDDRGLDQTDKKVLTTMIELYGGGPVGLTTIAANIGEEPDTISEM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY++Q GF++RTPRGR++ A+ HLG++ Sbjct: 301 YEPYLLQIGFLKRTPRGRMVTERAYAHLGLE 331 >gi|306828820|ref|ZP_07462012.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus mitis ATCC 6249] gi|304428998|gb|EFM32086.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus mitis ATCC 6249] Length = 332 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 171/313 (54%), Positives = 221/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDDVITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG D + Sbjct: 320 KAYEHLGYDYSEK 332 >gi|241889923|ref|ZP_04777221.1| holliday junction DNA helicase RuvB [Gemella haemolysans ATCC 10379] gi|241863545|gb|EER67929.1| holliday junction DNA helicase RuvB [Gemella haemolysans ATCC 10379] Length = 333 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 172/329 (52%), Positives = 232/329 (70%), Gaps = 1/329 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M DR S+N +E + SL RP+ L ++ GQ + SNLK+FIEAAK R E LDH L Sbjct: 1 MEDRMVSASQNFGEEREEQSL-RPKFLSQYIGQEQIKSNLKIFIEAAKLRGEVLDHCLLY 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+ V + TSGP I K+GDLAA+LT+LE DVLFIDEIHR+S Sbjct: 60 GPPGLGKTTLATIIANEMEVGIKYTSGPAIEKSGDLAAILTSLEPGDVLFIDEIHRISRS 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILY AMEDF LD+++G+G +RS++I L FTL+ ATTR G LT PL+DRFG+ RL Sbjct: 120 IEEILYSAMEDFYLDIVIGKGEESRSIRIELPPFTLVGATTRAGALTAPLRDRFGVHCRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY I +L+ I++R + + + ++++ EIAMRSRGTPRIA RLL+RVRDFA+V + Sbjct: 180 EFYTISELQNIIERTSDIFECDIDEQSSYEIAMRSRGTPRIANRLLKRVRDFAQVKNDGV 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +E+A +L L +D G D +D + L + + + G VG+ETI+ + E IED+ Sbjct: 240 IAKELAVESLDLLQVDAKGLDNIDYKILECLIKRYEGRAVGLETIAVTIGEESITIEDVY 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++++GFI+RTPRGR A+QHLGI Sbjct: 300 EPYLVKEGFIERTPRGRRATSKAYQHLGI 328 >gi|319956008|ref|YP_004167271.1| holliday junction DNA helicase ruvb [Nitratifractor salsuginis DSM 16511] gi|319418412|gb|ADV45522.1| Holliday junction DNA helicase RuvB [Nitratifractor salsuginis DSM 16511] Length = 337 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 167/306 (54%), Positives = 233/306 (76%), Gaps = 5/306 (1%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + +E+ GQ + NL+VFI+A+ RAEALDH+LF GPPGLGKTTLA ++A E+G N Sbjct: 20 LRPSSWDEYVGQEKIKKNLQVFIQASLKRAEALDHILFFGPPGLGKTTLANIIASEMGAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+ P+I K+GDLAALLTN+E+ D+LFIDEIHR+S +EEILYPAMED++LD+++G G Sbjct: 80 IKTTAAPMIEKSGDLAALLTNIEEGDILFIDEIHRMSPAIEEILYPAMEDYRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A++VKI+L RFTL+ ATTR G+L+NPL++RFG+ R+ FY E+L I+++ A G+ Sbjct: 140 PAAQAVKIDLPRFTLVGATTRAGMLSNPLRERFGMHFRMEFYTPEELAKIIEQAADKLGI 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EIA RSRGTPRIA RLLRRVRDFAEVA I+ E A L +L ++ +GFD Sbjct: 200 GIDKDAALEIARRSRGTPRIALRLLRRVRDFAEVAEEACISLETARYGLDQLGVNHIGFD 259 Query: 262 QLDLRYLTMI--ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 + DL+ L ++ AR G P+G+ TI+A LSE IE+++EPY+I G+I+RT RGR+ Sbjct: 260 EQDLKLLELLISAR---GRPMGLSTIAAALSEDEGTIEEVLEPYLIANGYIERTARGRIA 316 Query: 320 MPIAWQ 325 P +++ Sbjct: 317 TPKSYE 322 >gi|118474580|ref|YP_891667.1| Holliday junction DNA helicase RuvB [Campylobacter fetus subsp. fetus 82-40] gi|166231477|sp|A0RN84|RUVB_CAMFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|28974219|gb|AAO64220.1| putative Holliday junction DNA helicase [Campylobacter fetus] gi|118413806|gb|ABK82226.1| holliday junction DNA helicase RuvB [Campylobacter fetus subsp. fetus 82-40] Length = 343 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 166/311 (53%), Positives = 231/311 (74%), Gaps = 2/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP T EE+ GQ + SNLKVFI+AAK R E+LDHVLF GPPGLGKTTLA ++A E+G N Sbjct: 20 LRPLTFEEYIGQEKIKSNLKVFIKAAKKRLESLDHVLFYGPPGLGKTTLAHIIANEMGAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + +S P+I K+GDLAA+LTNLE+ DVLFIDEIHRLS +EE+LY AMEDF+LD+++G G Sbjct: 80 IKISSAPMIEKSGDLAAILTNLEEGDVLFIDEIHRLSPAIEEVLYSAMEDFRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI++ +FTLI ATTR G+++ PL+DRFG+ RL FY +L I+ A G Sbjct: 140 PAAQTIKIDIPKFTLIGATTRAGMISAPLRDRFGMQFRLQFYTDNELARIISIAASKLGK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 T EA+ EIA RSRGTPRIA RLL+R+RDFAEV+ +I+++ A ++L L ++ +GFD Sbjct: 200 NSTKEASLEIAKRSRGTPRIALRLLKRIRDFAEVSDENSISKDRAKSSLDSLGVNDLGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++DL+YL ++ + +G+ TI+A LSE +ED+IEPY++ G+I+RT +GR+L Sbjct: 260 EMDLKYLDILVGS--KRALGLSTIAAALSEDEGTVEDVIEPYLLSNGYIERTAKGRILSF 317 Query: 322 IAWQHLGIDIP 332 ++ GI P Sbjct: 318 KSYSVFGITPP 328 >gi|331267094|ref|YP_004326724.1| holliday junction DNA helicase RuvB [Streptococcus oralis Uo5] gi|326683766|emb|CBZ01384.1| holliday junction DNA helicase RuvB [Streptococcus oralis Uo5] Length = 332 Score = 345 bits (884), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 220/309 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPKYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHNDLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|315221657|ref|ZP_07863574.1| Holliday junction DNA helicase RuvB [Streptococcus anginosus F0211] gi|315189233|gb|EFU22931.1| Holliday junction DNA helicase RuvB [Streptococcus anginosus F0211] Length = 332 Score = 345 bits (884), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 169/309 (54%), Positives = 225/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGTG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL IV+R A++ + Sbjct: 140 EASRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEETDLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I +I D AL L +D+ G D Sbjct: 200 EITHEAAEELALRSRGTPRIANRLLKRVRDFAQIMGNGLIDDQITDQALTMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E ++ +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEEQETVEDMYEPYLIQKGFVMRTRTGRVATR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|160888649|ref|ZP_02069652.1| hypothetical protein BACUNI_01066 [Bacteroides uniformis ATCC 8492] gi|317477987|ref|ZP_07937170.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 4_1_36] gi|156861963|gb|EDO55394.1| hypothetical protein BACUNI_01066 [Bacteroides uniformis ATCC 8492] gi|316905901|gb|EFV27672.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 4_1_36] Length = 392 Score = 345 bits (884), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 175/331 (52%), Positives = 238/331 (71%), Gaps = 4/331 (1%) Query: 2 MDREGLLSRN---VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++E RN V+ + D + LRP E+F+GQ + NL++F++AA+ R EALDHV Sbjct: 48 MEQEDFDIRNQQPVTSRERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHV 107 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRL Sbjct: 108 LLHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRL 167 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI Sbjct: 168 SPVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGIN 227 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 + L +Y+ + L I++R + + + + AA EIA RSRGTPRIA LLRRVRDFA+V Sbjct: 228 LHLEYYDDDVLSGIIRRSSGILDVPCSVRAAAEIASRSRGTPRIANALLRRVRDFAQVKG 287 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 + +I EIA AL L IDK G D++D + L I F GGPVG+ TI+ L E IE Sbjct: 288 SGSIDTEIAQFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIE 347 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 ++ EP++I++GF++RTPRGR + +A++HLG Sbjct: 348 EVYEPFLIKEGFLKRTPRGREVTELAYKHLG 378 >gi|333029484|ref|ZP_08457545.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides coprosuis DSM 18011] gi|332740081|gb|EGJ70563.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides coprosuis DSM 18011] Length = 363 Score = 345 bits (884), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 169/307 (55%), Positives = 225/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + +F GQ + NL +F++AA+ RAEALDHVL GPPGLGKTTL+ ++A EL V Sbjct: 46 LRPLSFSDFNGQDKVVENLTIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELEVG 105 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 106 FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 165 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS+++ L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L TI++R A + + Sbjct: 166 PSARSIQLELNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLTTIIKRSAAILDV 225 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 D+AA EIA RSRGTPRI LLRRVRDFA+V +I +IA AL L IDK G D Sbjct: 226 PCDDQAAAEIASRSRGTPRICNALLRRVRDFAQVKGDGSIDIKIAQYALEALNIDKYGLD 285 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L + F GGPVG+ TI+ L E IE++ EP++I++GFI+RTPRGR + P Sbjct: 286 EIDNKILCTVIDKFDGGPVGLTTIATALGEDPGTIEEVYEPFLIKEGFIKRTPRGREVTP 345 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 346 LAYKHLG 352 >gi|322392598|ref|ZP_08066058.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus peroris ATCC 700780] gi|321144590|gb|EFX39991.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus peroris ATCC 700780] Length = 332 Score = 345 bits (884), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 222/309 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y +DL IV+R A + + Sbjct: 140 EASRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYTHDDLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDDVITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|239907718|ref|YP_002954459.1| holliday junction DNA helicase RuvB [Desulfovibrio magneticus RS-1] gi|239797584|dbj|BAH76573.1| holliday junction DNA helicase RuvB [Desulfovibrio magneticus RS-1] Length = 333 Score = 344 bits (883), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 175/323 (54%), Positives = 231/323 (71%), Gaps = 4/323 (1%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 EGL+ S +D +RP L +F GQ + +NLKVF+ AA + LDH L GPPG Sbjct: 10 EGLIPAAPSPDDT----IRPSRLADFIGQDDLRANLKVFLRAALEQGRTLDHSLLYGPPG 65 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLAQ++A ELGVN T+GPV+ + GDLAA++TNL D+LFIDEIHR+ VEEI Sbjct: 66 LGKTTLAQIMASELGVNLVQTTGPVLERCGDLAAIVTNLRRGDILFIDEIHRMPAAVEEI 125 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF+LDL++G+GP AR+V+I+L FTL+ ATTR+GLLT+PL+DRFG+ RL FY Sbjct: 126 LYPAMEDFKLDLIIGQGPGARTVRIDLEPFTLVGATTRLGLLTSPLRDRFGVIFRLEFYG 185 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 ++L IV R A + G+A+T + A I RSRGTPRIAGRLLRRVRDFA VA A+T+ E Sbjct: 186 PDELARIVTRAAGILGIAITPDGALAIGQRSRGTPRIAGRLLRRVRDFAVVAGAQTLDGE 245 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A AL RL +D G D +D + L + ++ GGPVG++T++ LSE +E++ EPY+ Sbjct: 246 LAAKALARLDVDPHGLDMMDRKILETLIHHYEGGPVGVKTLAVALSEEVRTLEEIYEPYL 305 Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327 IQ G I+RTPRGR+ A+ H+ Sbjct: 306 IQCGLIKRTPRGRVATAKAYAHI 328 >gi|257066398|ref|YP_003152654.1| Holliday junction DNA helicase RuvB [Anaerococcus prevotii DSM 20548] gi|256798278|gb|ACV28933.1| Holliday junction DNA helicase RuvB [Anaerococcus prevotii DSM 20548] Length = 335 Score = 344 bits (883), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 173/330 (52%), Positives = 236/330 (71%), Gaps = 1/330 (0%) Query: 3 DREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 + E ++ N ED + S +RPR L+++ GQ + L +FI+++ +R E LDHVL G Sbjct: 4 ENERIVGSNEQIEDLQEESCIRPRWLKDYIGQDKVKEKLDIFIQSSLSRNEPLDHVLLQG 63 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTL+ ++A ELGVN R TSGP I + DLA++LTNL + DVLFIDEIHR++ V Sbjct: 64 PPGLGKTTLSTIIANELGVNLRVTSGPAIERPSDLASILTNLAEGDVLFIDEIHRINRSV 123 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILY AMEDF LD++VG+GP+A+S++I+L++FTLI ATTR G+L+ PL+DRFG+ + LN Sbjct: 124 EEILYSAMEDFVLDIIVGKGPNAQSIRIDLAKFTLIGATTRAGMLSAPLRDRFGVLLALN 183 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 Y+ +DL TIV+R A++ + + D+ A EIA RSRGTPRIA RLL+RVRDFA V + I Sbjct: 184 LYDTKDLTTIVKRSAQILDIPIDDKGALEIARRSRGTPRIANRLLKRVRDFAIVKADEKI 243 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 E + L L ID MG D +D + + + NFGGGPVG++TI+A IED+ E Sbjct: 244 DFETSKRGLELLEIDPMGLDTMDKKIIMTMYDNFGGGPVGVDTIAASTGIENVTIEDVYE 303 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331 PY++Q GFI RTPRGR+L A++H G+ I Sbjct: 304 PYLLQIGFISRTPRGRVLTRKAYEHYGLKI 333 >gi|327467985|gb|EGF13475.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK330] Length = 332 Score = 344 bits (883), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 168/309 (54%), Positives = 225/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI K+GDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL IV+R A++ + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRD+A++ I +I D AL L +D+ G D Sbjct: 200 DITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVIRTRTGRVATR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|270295000|ref|ZP_06201201.1| Holliday junction DNA helicase RuvB [Bacteroides sp. D20] gi|270274247|gb|EFA20108.1| Holliday junction DNA helicase RuvB [Bacteroides sp. D20] Length = 349 Score = 344 bits (883), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 175/331 (52%), Positives = 238/331 (71%), Gaps = 4/331 (1%) Query: 2 MDREGLLSRN---VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M++E RN V+ + D + LRP E+F+GQ + NL++F++AA+ R EALDHV Sbjct: 5 MEQEDFDIRNQQPVTSRERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHV 64 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRL Sbjct: 65 LLHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRL 124 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI Sbjct: 125 SPVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGIN 184 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 + L +Y+ + L I++R + + + + AA EIA RSRGTPRIA LLRRVRDFA+V Sbjct: 185 LHLEYYDDDVLSGIIRRSSGILDVPCSVRAAAEIASRSRGTPRIANALLRRVRDFAQVKG 244 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 + +I EIA AL L IDK G D++D + L I F GGPVG+ TI+ L E IE Sbjct: 245 SGSIDTEIAQFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIE 304 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 ++ EP++I++GF++RTPRGR + +A++HLG Sbjct: 305 EVYEPFLIKEGFLKRTPRGREVTELAYKHLG 335 >gi|315606858|ref|ZP_07881867.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella buccae ATCC 33574] gi|315251523|gb|EFU31503.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella buccae ATCC 33574] Length = 345 Score = 344 bits (883), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 169/307 (55%), Positives = 222/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP ++F GQ + NL++F+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPVHFQDFNGQQKVVENLEIFVEAAKFRGEPLDHTLLYGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR G+LT PL+ RFGI + L +Y E L I++R A L + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGMLTAPLRARFGINMHLEYYAPETLMRIIKRSAYLLRV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEAA EI+ RSRGTPRIA LLRRVRDFA+V TI IA AL L ID+ G D Sbjct: 203 PIDDEAAIEISRRSRGTPRIANSLLRRVRDFAQVKGNGTIDTVIAKMALQALNIDQYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR+ Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRMATR 322 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 323 LAYEHLG 329 >gi|223986043|ref|ZP_03636072.1| hypothetical protein HOLDEFILI_03378 [Holdemania filiformis DSM 12042] gi|223961993|gb|EEF66476.1| hypothetical protein HOLDEFILI_03378 [Holdemania filiformis DSM 12042] Length = 336 Score = 344 bits (883), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 177/328 (53%), Positives = 232/328 (70%), Gaps = 1/328 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD E LLS + + D S LRP+ L ++ GQ + NLKVFI+AA R E LDHVL G Sbjct: 1 MDEERLLS-ALPEAGDDESSLRPQRLTDYIGQTQLKENLKVFIQAALQRNETLDHVLLYG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+G R+ SGP I ++GDLAA+L+ LE DVLFIDEIHRL +V Sbjct: 60 PPGLGKTTLAYILANEMGGKVRTASGPSIERSGDLAAILSTLEPGDVLFIDEIHRLPKMV 119 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF +D++VG+ RS++++L FTL+ ATTR G LT PL+DRFGI +L Sbjct: 120 EEVLYPAMEDFCIDIVVGKDSGVRSIRLDLPPFTLVGATTRAGDLTAPLRDRFGIVNKLE 179 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y+ + L IV R +++ +A EA EIA RSRGTPRIA RLLRRVRDFA+V + I Sbjct: 180 YYDEDQLSQIVSRTSRVLNVAAAPEAVREIAKRSRGTPRIANRLLRRVRDFAQVLNGGVI 239 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 + ++A AL RL +D +G D +D+RYL I F GGPVG+E +++ +SE +ED+ E Sbjct: 240 SLDVAQTALDRLRVDSLGLDDVDIRYLRGIIERFRGGPVGLEALASSISEEPMTLEDVYE 299 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 PY+IQ GFI RTPRGR+ P A++HL I Sbjct: 300 PYLIQIGFINRTPRGRVATPKAYEHLKI 327 >gi|325104948|ref|YP_004274602.1| Holliday junction DNA helicase RuvB [Pedobacter saltans DSM 12145] gi|324973796|gb|ADY52780.1| Holliday junction DNA helicase RuvB [Pedobacter saltans DSM 12145] Length = 337 Score = 344 bits (883), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 175/321 (54%), Positives = 228/321 (71%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 S +S D +I +LRP+ ++FTGQ + NLK+F++AAK R E LDHVL GPPGLGK Sbjct: 9 SEKLSFTDKEIEKVLRPQEFDDFTGQEKILENLKIFVKAAKLRGEPLDHVLLHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTL+ ++A E+GV + TSGPV+ K GDLA LLTNL+ D+LFIDEIHRLS +VEE LY Sbjct: 69 TTLSHIIANEMGVGIKITSGPVLDKPGDLAGLLTNLDAGDILFIDEIHRLSPLVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMEDF++D+M+ GP+ARSV+I+LS FTL+ ATTR GLLT PL+ RFGI RL +Y+ + Sbjct: 129 AMEDFKIDIMLETGPNARSVQISLSPFTLVGATTRSGLLTAPLRARFGINSRLQYYDAKL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV R A + +T+ A EIA RSRGTPRIA LLRR RDFA++ I EIA Sbjct: 189 LTTIVIRSAYILKTPITETGAYEIARRSRGTPRIANALLRRTRDFAQIKGNGEIDTEIAK 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D+ G D++D R L+ I F GGPVG++TI+ + E IE++ EP++IQ+ Sbjct: 249 YALNALNVDEHGLDEMDNRILSTIVDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQE 308 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 G++ RT RGR P A+QHLG Sbjct: 309 GYLMRTSRGREATPAAYQHLG 329 >gi|300362257|ref|ZP_07058433.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus gasseri JV-V03] gi|300353248|gb|EFJ69120.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus gasseri JV-V03] Length = 339 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 174/327 (53%), Positives = 229/327 (70%), Gaps = 1/327 (0%) Query: 3 DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 D E ++ S+ED I L LRP+ L ++ GQ + S +K++I+AAK R EALDHVL G Sbjct: 6 DEERIIGAESSEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKKRDEALDHVLLYG 65 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L DVLFIDEIHRL+ V Sbjct: 66 PPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAKPV 125 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF +D++VGEG + +V + L FTLI ATTR G L+ PL+DRFGI + Sbjct: 126 EEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEHMQ 185 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y ++DL+ I+QR + + + EAA E+A RSRGTPR+A RLL+RVRDFAEV + I Sbjct: 186 YYSVDDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEEAI 245 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 + +L L +D G DQ D + L M+ N+GGGPVGI+TI+A + E D IE++ E Sbjct: 246 SLATTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEVYE 305 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328 PY++Q+GFI RTPRGR + A+ LG Sbjct: 306 PYLLQKGFITRTPRGRSVTQKAYLQLG 332 >gi|239629699|ref|ZP_04672730.1| holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065825|ref|YP_003787848.1| holliday junction resolvasome, helicase subunit [Lactobacillus casei str. Zhang] gi|239528385|gb|EEQ67386.1| holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438232|gb|ADK17998.1| Holliday junction resolvasome, helicase subunit [Lactobacillus casei str. Zhang] Length = 338 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 173/329 (52%), Positives = 229/329 (69%), Gaps = 2/329 (0%) Query: 3 DREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 D++ L+S +V S E LRPR L ++ GQ L+V+I AAK R E+LDHVL Sbjct: 5 DKDRLVSGDVDDSNEAQIEKSLRPRMLAQYIGQDRVKHQLEVYITAAKQREESLDHVLLY 64 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A ELGVN R+TSGP I K GDL ALL L DVLFIDEIHRL I Sbjct: 65 GPPGLGKTTLALVIANELGVNIRTTSGPAIEKPGDLVALLNELHPGDVLFIDEIHRLPKI 124 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LY AMEDF +D++VG+GP+A V L FTLI ATTR G+L+ PL+DRFGI + Sbjct: 125 VEEMLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGISEHM 184 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y +DL IV+R A + +A+ E A EIA RSRGTPR+A RLL+R+RDFAEVA Sbjct: 185 AYYSADDLSEIVKRSATIFDMAIDAEGAHEIARRSRGTPRVANRLLKRIRDFAEVAGQSP 244 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + ++ D AL +L +D+ G DQ+D + L + R++ GGPVG+ TI+A + E IE++ Sbjct: 245 VDIQMVDHALDQLQVDQQGLDQIDRKLLMFMIRDYEGGPVGLSTIAANIGEEMATIEEMY 304 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q G+++RTPRGR++ P + H+G+ Sbjct: 305 EPYLLQIGYLKRTPRGRMVTPAGFAHMGL 333 >gi|116494313|ref|YP_806047.1| Holliday junction DNA helicase RuvB [Lactobacillus casei ATCC 334] gi|191637649|ref|YP_001986815.1| Holliday junction DNA helicase RuvB [Lactobacillus casei BL23] gi|227534465|ref|ZP_03964514.1| Holliday junction DNA helicase B [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|122264258|sp|Q03B17|RUVB_LACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238693019|sp|B3WC56|RUVB_LACCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116104463|gb|ABJ69605.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus casei ATCC 334] gi|190711951|emb|CAQ65957.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus casei BL23] gi|227187864|gb|EEI67931.1| Holliday junction DNA helicase B [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327381704|gb|AEA53180.1| Holliday junction DNA helicase RuvA [Lactobacillus casei LC2W] gi|327384870|gb|AEA56344.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BD-II] Length = 338 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 173/329 (52%), Positives = 229/329 (69%), Gaps = 2/329 (0%) Query: 3 DREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 D++ L+S +V S E LRPR L ++ GQ L+V+I AAK R E+LDHVL Sbjct: 5 DKDRLVSGDVDDSNEAQIEKSLRPRMLAQYIGQDRVKHQLEVYITAAKQREESLDHVLLY 64 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A ELGVN R+TSGP I K GDL ALL L DVLFIDEIHRL I Sbjct: 65 GPPGLGKTTLALVIANELGVNIRTTSGPAIEKPGDLVALLNELHPGDVLFIDEIHRLPKI 124 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LY AMEDF +D++VG+GP+A V L FTLI ATTR G+L+ PL+DRFGI + Sbjct: 125 VEEMLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGISEHM 184 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y +DL IV+R A + +A+ E A EIA RSRGTPR+A RLL+R+RDFAEVA Sbjct: 185 AYYSADDLSEIVKRSATIFDMAIDAEGAHEIARRSRGTPRVANRLLKRIRDFAEVAGQSP 244 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + ++ D AL +L +D+ G DQ+D + L + R++ GGPVG+ TI+A + E IE++ Sbjct: 245 VDIQMVDHALDQLQVDQQGLDQIDRKLLMFMIRDYEGGPVGLSTIAANIGEEMATIEEMY 304 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q G+++RTPRGR++ P + H+G+ Sbjct: 305 EPYLLQIGYLKRTPRGRMVTPAGFAHMGM 333 >gi|315160795|gb|EFU04812.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0645] Length = 338 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 174/331 (52%), Positives = 224/331 (67%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M + E LLS + +A I LRP+ L ++ GQ + L ++IEAAK R EALDH L Sbjct: 1 MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L LE DVLFIDEIHRL Sbjct: 61 YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LY AMEDF +D+MVG+G +A V L FTL+ ATTR G+L+ PL+DRFGI Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y+ +DLK IV R A + + +E A EIA RSRGTPRIA RLL+RVRDFA+V Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I R IAD AL L +D G D +D + L + +GGGP G+ T+S + E + +ED+ Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPGGLSTLSVNIGEETETVEDM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+IQ+GFI+RTPRGR+ P A+ H G D Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYD 331 >gi|320548063|ref|ZP_08042343.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus equinus ATCC 9812] gi|320447305|gb|EFW88068.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus equinus ATCC 9812] Length = 332 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 168/307 (54%), Positives = 221/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + + LK+FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGNG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y +EDL IV+R A + + Sbjct: 140 ETSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAVEDLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPRIA RLL+RVRD+A++ IT+ I D AL L +D G D Sbjct: 200 EIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIITKGITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATA 319 Query: 322 IAWQHLG 328 A++HLG Sbjct: 320 KAYEHLG 326 >gi|319940375|ref|ZP_08014725.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptococcus anginosus 1_2_62CV] gi|319810431|gb|EFW06773.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptococcus anginosus 1_2_62CV] Length = 332 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 169/309 (54%), Positives = 224/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A++ + Sbjct: 140 ETSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAEADLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D+ G D Sbjct: 200 DITHEAAEELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDAHITDQALSMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GF+ RT GR++ Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVVTR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|27468242|ref|NP_764879.1| Holliday junction DNA helicase B [Staphylococcus epidermidis ATCC 12228] gi|57867144|ref|YP_188780.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis RP62A] gi|251811046|ref|ZP_04825519.1| Holliday junction DNA helicase B [Staphylococcus epidermidis BCM-HMP0060] gi|282875934|ref|ZP_06284801.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis SK135] gi|293366402|ref|ZP_06613081.1| crossover junction endoribonuclease subunit B [Staphylococcus epidermidis M23864:W2(grey)] gi|33301649|sp|Q8CS91|RUVB_STAES RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|71153738|sp|Q5HNR0|RUVB_STAEQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|27315788|gb|AAO04923.1|AE016748_157 holliday junction DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|57637802|gb|AAW54590.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis RP62A] gi|251805422|gb|EES58079.1| Holliday junction DNA helicase B [Staphylococcus epidermidis BCM-HMP0060] gi|281294959|gb|EFA87486.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis SK135] gi|291319527|gb|EFE59894.1| crossover junction endoribonuclease subunit B [Staphylococcus epidermidis M23864:W2(grey)] gi|329724653|gb|EGG61159.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis VCU144] gi|329733790|gb|EGG70116.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis VCU045] gi|329737203|gb|EGG73457.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis VCU028] Length = 334 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 169/328 (51%), Positives = 230/328 (70%), Gaps = 2/328 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD+ ++ + ED D+ L LRP L+++ GQ SNL+VFI+AAK R E LDHVL Sbjct: 1 MDKR-MVDQEFHNEDTDLELSLRPTQLKQYIGQSSIKSNLEVFIKAAKLRQEPLDHVLLF 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS + Sbjct: 60 GPPGLGKTTLSNIIANEMEVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +RL Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y DLK I+ R A++ G + E+A E+A RSRGTPRIA RLL+RVRDF +V Sbjct: 180 EYYNENDLKEIITRTAEVLGTDIDKESALELARRSRGTPRIANRLLKRVRDFQQVNEDDQ 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I E AL L +D+ G D +D + + I + GGPVG++TI+ + E R IED+ Sbjct: 240 IYIETTKRALQLLQVDQHGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERVTIEDVY 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EP++IQ+GF++RTPRGR +A++H Sbjct: 300 EPFLIQRGFLERTPRGRKATALAYEHFN 327 >gi|323143602|ref|ZP_08078279.1| Holliday junction DNA helicase RuvB [Succinatimonas hippei YIT 12066] gi|322416665|gb|EFY07322.1| Holliday junction DNA helicase RuvB [Succinatimonas hippei YIT 12066] Length = 379 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 171/308 (55%), Positives = 223/308 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+++ GQ + S L++ + AAK R EALDHVL GPPGLGKTTL+ ++A ELGV+ Sbjct: 55 LRPKTLKDYIGQEDVKSQLEIALAAAKKRGEALDHVLIFGPPGLGKTTLSNIIANELGVH 114 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGP + K GD AALLTNL+ RDV+FIDEIHRLS ++EE +YPAMED+Q+D+M GEG Sbjct: 115 LSQTSGPALEKKGDAAALLTNLQPRDVIFIDEIHRLSPVIEEFMYPAMEDYQVDIMTGEG 174 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS+KI LS FTLI ATT+ G LT+PL+ RFGI ++L++Y +L I++ AK + Sbjct: 175 PSARSIKIGLSPFTLIGATTKAGTLTSPLRARFGIILQLSYYTPSELFLIIKASAKKLKI 234 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRIA RLL+RVRD+AEV I EIA AAL ID GFD Sbjct: 235 KIDKDGAMEIAKRSRGTPRIANRLLKRVRDYAEVRGNGEINVEIAKAALDLQKIDPDGFD 294 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D +YL + +F GGPVG+E+++A L R+ +E ++EPY+IQQGFIQRT GR+ Sbjct: 295 DFDRQYLRSVILDFNGGPVGVESLAASLGHDRETLESVVEPYLIQQGFIQRTRSGRVATK 354 Query: 322 IAWQHLGI 329 A+ G+ Sbjct: 355 KAYDKFGL 362 >gi|330998026|ref|ZP_08321857.1| Holliday junction DNA helicase RuvB [Paraprevotella xylaniphila YIT 11841] gi|329569327|gb|EGG51107.1| Holliday junction DNA helicase RuvB [Paraprevotella xylaniphila YIT 11841] Length = 344 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 173/320 (54%), Positives = 228/320 (71%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S N S E + LRP +F+GQ++ NLKVF+EAAK R E LDH L GPPGLGKT Sbjct: 10 SSNSSAEREFENALRPLQFGDFSGQLKVVENLKVFVEAAKYRGEPLDHTLLHGPPGLGKT 69 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY A Sbjct: 70 TLSNIIANELGVGFKVTSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSA 129 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED+++D+M+ +GPSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E L Sbjct: 130 MEDYRIDIMIDKGPSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDAEVL 189 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 IV+R A + + + +AA EIA RSRGTPRIA LLRRVRDFA+V + IA Sbjct: 190 SRIVERSAHILSVPIEHDAAMEIAGRSRGTPRIANALLRRVRDFAQVRGTGRVDMAIARY 249 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L ID+ G D++D + L I F GGPVGI TI+ + E +E++ EP++I++G Sbjct: 250 ALEALNIDRYGLDEIDNKILLTIIDKFKGGPVGITTIATAIGEDAGTVEEVYEPFLIKEG 309 Query: 309 FIQRTPRGRLLMPIAWQHLG 328 FI+RTPRGR + +A++HLG Sbjct: 310 FIKRTPRGREVTDMAYKHLG 329 >gi|332881690|ref|ZP_08449338.1| Holliday junction DNA helicase RuvB [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680329|gb|EGJ53278.1| Holliday junction DNA helicase RuvB [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 344 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 173/320 (54%), Positives = 228/320 (71%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S N S E + LRP +F+GQ++ NLKVF+EAAK R E LDH L GPPGLGKT Sbjct: 10 SSNSSAEREFENALRPLQFGDFSGQLKVVENLKVFVEAAKYRGEPLDHTLLHGPPGLGKT 69 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY A Sbjct: 70 TLSNIIANELGVGFKVTSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSA 129 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED+++D+M+ +GPSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E L Sbjct: 130 MEDYRIDIMIDKGPSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDAEVL 189 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 IV+R A + + + +AA EIA RSRGTPRIA LLRRVRDFA+V + IA Sbjct: 190 SRIVERSAHILSVPIEHDAAMEIAGRSRGTPRIANALLRRVRDFAQVRGTGRVDMAIARY 249 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L ID+ G D++D + L I F GGPVGI TI+ + E +E++ EP++I++G Sbjct: 250 ALEALNIDRYGLDEIDNKILLTIIDKFKGGPVGITTIATAIGEDAGTVEEVYEPFLIKEG 309 Query: 309 FIQRTPRGRLLMPIAWQHLG 328 FI+RTPRGR + +A++HLG Sbjct: 310 FIKRTPRGREVTDMAYKHLG 329 >gi|169831521|ref|YP_001717503.1| Holliday junction DNA helicase RuvB [Candidatus Desulforudis audaxviator MP104C] gi|169638365|gb|ACA59871.1| Holliday junction DNA helicase RuvB [Candidatus Desulforudis audaxviator MP104C] Length = 344 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 176/332 (53%), Positives = 229/332 (68%), Gaps = 1/332 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+D+ +++ + ED D LRPR L+EF GQ L + IEAA+ R EALDHVL Sbjct: 5 MLDQR-IVAPGLKVEDVDEVTLRPRYLDEFIGQARVRETLALCIEAARRRGEALDHVLLY 63 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARE+G N R TSGP I + GDLAA+LTNL D+LFIDE+HRLS Sbjct: 64 GPPGLGKTTLAHIIAREMGGNIRVTSGPAIERPGDLAAILTNLGPGDILFIDEVHRLSRT 123 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILYP MEDF LD+++G+GP ARS+++NL RFTL+ ATTR G LT+PL+DRFG+ RL Sbjct: 124 VEEILYPGMEDFALDIVIGKGPGARSLRLNLPRFTLVGATTRAGHLTSPLRDRFGVVSRL 183 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY EDL IV RGA + + + A IA R+RGTPR+A RLL+RVRD+ +V Sbjct: 184 EFYSPEDLLAIVIRGAGIIRVDIEPAGAALIARRARGTPRVANRLLKRVRDYVQVRAQGV 243 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT + A AL L ID++G D D L ++ FGGGPVG++T++A E +ED+ Sbjct: 244 ITADNAVEALEFLGIDELGLDNTDRHLLAVLIEKFGGGPVGLDTLAAATGEEAANLEDVY 303 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q G I RT RGR+ P+A++H+G P Sbjct: 304 EPYLLQSGLITRTSRGRVATPLAYRHMGSPQP 335 >gi|315658089|ref|ZP_07910961.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus lugdunensis M23590] gi|315496418|gb|EFU84741.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus lugdunensis M23590] Length = 334 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 170/328 (51%), Positives = 230/328 (70%), Gaps = 3/328 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++ ++ QED+ LRP L+++ GQ SNL+VFI+AAK R E LDHVL Sbjct: 1 MDDR--MVDQSFHQEDSAFEYSLRPTYLKQYIGQTSIKSNLEVFIQAAKLREEPLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS Sbjct: 59 FGPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSS 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMEDF LD+++G+G ARS++I+L FTLI ATTR G LT PL+DRFG+ +R Sbjct: 119 VVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLIGATTRAGSLTGPLRDRFGVHLR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y +LK I+ R A + G ++ DE+A E+A RSRGTPR+A RLL+RVRDF +V Sbjct: 179 LEYYNEHELKEIIIRTADVLGTSIDDESAVELAKRSRGTPRVANRLLKRVRDFQQVNGDD 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I E AL L +D+ G D +D + + I + GGPVG++TI+ + E R IED+ Sbjct: 239 QIYIETTKKALKLLQVDEQGLDYIDHKMMNCIINQYQGGPVGLDTIAVSIGEERVTIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EP++IQ+GFI+RTPRGR A++H Sbjct: 299 YEPFLIQKGFIERTPRGRKATAFAYEHF 326 >gi|229829131|ref|ZP_04455200.1| hypothetical protein GCWU000342_01216 [Shuttleworthia satelles DSM 14600] gi|229792294|gb|EEP28408.1| hypothetical protein GCWU000342_01216 [Shuttleworthia satelles DSM 14600] Length = 334 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 168/323 (52%), Positives = 229/323 (70%), Gaps = 1/323 (0%) Query: 7 LLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S + +ED A LRPR L E+ GQ +A +L ++IEAAK R E+LDHVL GPPGL Sbjct: 5 IISTEIQEEDQAQEFSLRPRKLSEYIGQEKAKQSLGIYIEAAKNRGESLDHVLLYGPPGL 64 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA +++ E+GVN + TSGP IAK G++AA+L+ L + D+LF+DEIHRL+ VEE+L Sbjct: 65 GKTTLAGIISNEMGVNVKITSGPAIAKPGEMAAILSGLGEGDILFVDEIHRLNRQVEEVL 124 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED+ +D+M+G+G SARS++++L FTL+ ATTR GLL+ PL+DRFGI L FY Sbjct: 125 YPAMEDYAIDIMIGKGQSARSIRLDLPHFTLVGATTRAGLLSAPLRDRFGIIHHLEFYTP 184 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++L I++ A G+ + E A E+A RSRGTPR+A RLL+RVRD+AEV + ITRE+ Sbjct: 185 QELSVIIRHSADKLGVTIDREGAYEMARRSRGTPRLANRLLKRVRDYAEVEYEGKITREV 244 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +DKMG D D L I F GGPVG++T+SA + E IE++ EPY++ Sbjct: 245 AGEALDLLEVDKMGLDSNDRLILMTIIEKFDGGPVGLDTLSAAIGEDAGTIEEVYEPYLV 304 Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328 + G I RTP+GR+ A+ H G Sbjct: 305 KNGLINRTPKGRVATDQAYHHFG 327 >gi|291459000|ref|ZP_06598390.1| holliday junction DNA helicase RuvB [Oribacterium sp. oral taxon 078 str. F0262] gi|291418254|gb|EFE91973.1| holliday junction DNA helicase RuvB [Oribacterium sp. oral taxon 078 str. F0262] Length = 336 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 173/333 (51%), Positives = 233/333 (69%), Gaps = 2/333 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M+R + + S++ + +RP+ L ++ GQ + L V+I AAK RA++LDH LF G Sbjct: 1 MERRIINTEESSEDRSFEPAIRPQLLSDYIGQRKLKEMLSVYIRAAKNRAQSLDHCLFYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTT+A ++A ELGVN + TSGP I K G++AALL NL + DVLF+DEIHRL+ V Sbjct: 61 PPGLGKTTIANIIAHELGVNIKVTSGPAIEKPGEMAALLNNLSEGDVLFVDEIHRLNRQV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF +D+M+G+ S+RS+++ L FTLI ATTR GLL+ PL+DRFGI +L Sbjct: 121 EEVLYPAMEDFAIDIMLGKDASSRSIRLELPHFTLIGATTRAGLLSAPLRDRFGIIAKLE 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FYE +L+ IV R A++ + + E A IA+RSRGTPR+A RLLRR RDFA++ + I Sbjct: 181 FYETAELEEIVLRSARVLKVEIEPEGARRIALRSRGTPRLANRLLRRTRDFADIRYEGRI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T E AD AL L +D++G DQ D YL I F GGPVG+ET++A L E IED+ E Sbjct: 241 TAEAADYALDILDVDRLGLDQNDRSYLLTIMEKFSGGPVGLETLAASLGEDSGTIEDVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 PY++ G I RTPRGR+ A++HLG +PH+ Sbjct: 301 PYLLMNGLIMRTPRGRVATERAYRHLG--LPHQ 331 >gi|283470917|emb|CAQ50128.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus ST398] Length = 334 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 166/324 (51%), Positives = 231/324 (71%), Gaps = 1/324 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++ +++ E+ D L LRP L ++ GQ SNL+VFI+AAK R E LDHVL GPP Sbjct: 3 ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS +VEE Sbjct: 63 GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +RL +Y Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 DLK I+ R A++ G + +E+A E+A RSRGTPR+A RLL+RVRDF +V + I Sbjct: 183 NESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 E AL L +D+ G D +D + + I + + GGPVG++ I+ + E R IED+ EP+ Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDAIAVTIGEERITIEDVYEPF 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327 +IQ+GF++RTPRGR P+A++H Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326 >gi|270292038|ref|ZP_06198253.1| holliday junction DNA helicase RuvB [Streptococcus sp. M143] gi|270279566|gb|EFA25408.1| holliday junction DNA helicase RuvB [Streptococcus sp. M143] Length = 332 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 170/313 (54%), Positives = 221/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 320 KAYEHLGYEYSEK 332 >gi|327463406|gb|EGF09725.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis SK1057] Length = 332 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 167/309 (54%), Positives = 225/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI K+GDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL IV+R A++ + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T +AA E+A+RSRGTPRIA RLL+RVRD+A++ I +I D AL L +D+ G D Sbjct: 200 DITHKAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|218281324|ref|ZP_03487812.1| hypothetical protein EUBIFOR_00377 [Eubacterium biforme DSM 3989] gi|218217509|gb|EEC91047.1| hypothetical protein EUBIFOR_00377 [Eubacterium biforme DSM 3989] Length = 336 Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 172/320 (53%), Positives = 226/320 (70%), Gaps = 1/320 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N+ + D LRP++L E+ GQ E NL VFI AA++R EALDHVLF GPPGLGKTTL Sbjct: 8 NLQECDNFEKTLRPQSLNEYIGQSELKENLNVFIHAARSRNEALDHVLFYGPPGLGKTTL 67 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+ N ++ SGP I K+GDLAA+LT LE DVLFIDEIHRL VEE+LYPAME Sbjct: 68 AYILANEMHGNLKTASGPSIEKSGDLAAILTTLEPGDVLFIDEIHRLPKQVEEVLYPAME 127 Query: 131 DFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 D+ LD++VG + + +++INL FTL+ ATTR G L+ PL+DRFGI +L +Y ++DL+ Sbjct: 128 DYCLDIVVGKDSATVHNIRINLPPFTLVGATTRAGDLSAPLRDRFGIISQLEYYNLQDLE 187 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IV R + + + A EIA+RSRGTPRIA RL RRVRDFA+V + I+ EIA A Sbjct: 188 KIVYRTSCVMNTEIDKNAVAEIALRSRGTPRIANRLFRRVRDFAQVYNEGVISSEIAKTA 247 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L RL +D +G D +D +YL I F GGPVG+E I++ + E +ED+ EPY++Q GF Sbjct: 248 LDRLRVDHLGLDAVDHKYLKGIIERFKGGPVGLEAIASSIGEEPMTLEDVYEPYLLQIGF 307 Query: 310 IQRTPRGRLLMPIAWQHLGI 329 I RTPRGR++ P A++HL I Sbjct: 308 INRTPRGRIVTPKAYEHLQI 327 >gi|289550594|ref|YP_003471498.1| Holliday junction DNA helicase RuvB [Staphylococcus lugdunensis HKU09-01] gi|289180126|gb|ADC87371.1| Holliday junction DNA helicase RuvB [Staphylococcus lugdunensis HKU09-01] Length = 334 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 170/328 (51%), Positives = 230/328 (70%), Gaps = 3/328 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++ ++ QED+ LRP L+++ GQ SNL+VFI+AAK R E LDHVL Sbjct: 1 MDDR--MVDQSFHQEDSAFEYSLRPTYLKQYIGQTTIKSNLEVFIQAAKLREEPLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS Sbjct: 59 FGPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSS 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMEDF LD+++G+G ARS++I+L FTLI ATTR G LT PL+DRFG+ +R Sbjct: 119 VVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLIGATTRAGSLTGPLRDRFGVHLR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y +LK I+ R A + G ++ DE+A E+A RSRGTPR+A RLL+RVRDF +V Sbjct: 179 LEYYNEHELKEIIIRTADVLGTSIDDESAVELAKRSRGTPRVANRLLKRVRDFQQVNGDD 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I E AL L +D+ G D +D + + I + GGPVG++TI+ + E R IED+ Sbjct: 239 QIYIETTKKALKLLQVDEQGLDYIDHKMMNCIINQYQGGPVGLDTIAVSIGEERVTIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EP++IQ+GFI+RTPRGR A++H Sbjct: 299 YEPFLIQKGFIERTPRGRKATAFAYEHF 326 >gi|322388648|ref|ZP_08062248.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus infantis ATCC 700779] gi|321140568|gb|EFX36073.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus infantis ATCC 700779] Length = 332 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 170/313 (54%), Positives = 222/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EASRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYTHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDDVITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 320 KAYEHLGYEYSEK 332 >gi|288925421|ref|ZP_06419355.1| holliday junction DNA helicase RuvB [Prevotella buccae D17] gi|288337892|gb|EFC76244.1| holliday junction DNA helicase RuvB [Prevotella buccae D17] Length = 345 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 169/307 (55%), Positives = 222/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP ++F GQ + NL++F+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPVHFQDFNGQQKVVENLEIFVEAAKFRGEPLDHTLLYGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR G+LT PL+ RFGI + L +Y E L I++R A L + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGMLTAPLRARFGINMHLEYYAPEILMRIIKRSAYLLRV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEAA EI+ RSRGTPRIA LLRRVRDFA+V TI IA AL L ID+ G D Sbjct: 203 PIDDEAAIEISRRSRGTPRIANSLLRRVRDFAQVKGNGTIDTVIAKMALQALNIDQYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR+ Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRMATR 322 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 323 LAYEHLG 329 >gi|306825930|ref|ZP_07459268.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431862|gb|EFM34840.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 332 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 170/313 (54%), Positives = 221/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 KITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGNGLIDDVITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILHTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 320 KAYEHLGYEYSEK 332 >gi|307709955|ref|ZP_07646402.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK564] gi|307619326|gb|EFN98455.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK564] Length = 323 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 171/313 (54%), Positives = 220/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 11 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 71 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ TI I D AL L +D G D Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGTIDDLITDKALTMLDVDHEGLD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 251 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310 Query: 322 IAWQHLGIDIPHR 334 A+ HLG + + Sbjct: 311 KAYDHLGYEYNEK 323 >gi|224541318|ref|ZP_03681857.1| hypothetical protein CATMIT_00478 [Catenibacterium mitsuokai DSM 15897] gi|224525755|gb|EEF94860.1| hypothetical protein CATMIT_00478 [Catenibacterium mitsuokai DSM 15897] Length = 330 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 170/328 (51%), Positives = 236/328 (71%), Gaps = 2/328 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MDR+ +L N ED + SL RP + +E+ GQ + NL+VF+ AAK R E LDHVLF G Sbjct: 1 MDRD-VLDTNEHIEDEESSL-RPASFDEYVGQHDLKENLRVFVGAAKMRDETLDHVLFYG 58 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTT++ ++A E+G + + T+GP I K GDL ALLT+LE DVLFIDEIHRL+ +V Sbjct: 59 PPGLGKTTMSMIIANEMGTHIKITTGPSIEKTGDLVALLTSLEPGDVLFIDEIHRLNKVV 118 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMEDF +D+M+G+ + RSV+I+L FTL+ ATTR G ++ PL+DRFGI +L+ Sbjct: 119 EEILYPAMEDFCVDVMIGKDATTRSVRIDLPPFTLVGATTRAGDISAPLRDRFGIVAKLD 178 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y+ E+L+ I+ R +K+ G+ + +EA E+A RSRGTPRIA RL RRVRDFA+ + I Sbjct: 179 YYKDEELRDIISRTSKVYGMTMEEEAKMELARRSRGTPRIANRLFRRVRDFAQFYGDEII 238 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T++ AL RL +D +G D +D +YL I F GGPVG+E ++A + E R +ED+ E Sbjct: 239 TKDRTMQALDRLKVDNLGLDDVDHKYLLGIINRFQGGPVGLEALAASIGEERMTLEDVYE 298 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 PY++Q+G I+RT RGR+ +A++H I Sbjct: 299 PYLLQKGLIKRTSRGRIATNLAYRHFHI 326 >gi|293364311|ref|ZP_06611037.1| crossover junction endoribonuclease subunit B [Streptococcus oralis ATCC 35037] gi|307702723|ref|ZP_07639675.1| holliday junction DNA helicase RuvB [Streptococcus oralis ATCC 35037] gi|291317157|gb|EFE57584.1| crossover junction endoribonuclease subunit B [Streptococcus oralis ATCC 35037] gi|307623839|gb|EFO02824.1| holliday junction DNA helicase RuvB [Streptococcus oralis ATCC 35037] Length = 332 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 170/313 (54%), Positives = 222/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D+ G D Sbjct: 200 EITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDDVITDKALTMLDVDREGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 320 KAYEHLGYEYSEK 332 >gi|255971608|ref|ZP_05422194.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T1] gi|255974580|ref|ZP_05425166.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T2] gi|256761915|ref|ZP_05502495.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T3] gi|256956954|ref|ZP_05561125.1| holliday junction DNA helicase RuvB [Enterococcus faecalis DS5] gi|256960753|ref|ZP_05564924.1| holliday junction DNA helicase RuvB [Enterococcus faecalis Merz96] gi|256964043|ref|ZP_05568214.1| holliday junction DNA helicase RuvB [Enterococcus faecalis HIP11704] gi|257078630|ref|ZP_05572991.1| holliday junction DNA helicase RuvB [Enterococcus faecalis JH1] gi|257081406|ref|ZP_05575767.1| holliday junction DNA helicase RuvB [Enterococcus faecalis E1Sol] gi|257084065|ref|ZP_05578426.1| holliday junction DNA helicase RuvB [Enterococcus faecalis Fly1] gi|257088549|ref|ZP_05582910.1| holliday junction DNA helicase ruvB [Enterococcus faecalis CH188] gi|257417485|ref|ZP_05594479.1| holliday junction DNA helicase RuvB [Enterococcus faecalis AR01/DG] gi|257418784|ref|ZP_05595778.1| holliday junction DNA helicase ruvB [Enterococcus faecalis T11] gi|255962626|gb|EET95102.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T1] gi|255967452|gb|EET98074.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T2] gi|256683166|gb|EEU22861.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T3] gi|256947450|gb|EEU64082.1| holliday junction DNA helicase RuvB [Enterococcus faecalis DS5] gi|256951249|gb|EEU67881.1| holliday junction DNA helicase RuvB [Enterococcus faecalis Merz96] gi|256954539|gb|EEU71171.1| holliday junction DNA helicase RuvB [Enterococcus faecalis HIP11704] gi|256986660|gb|EEU73962.1| holliday junction DNA helicase RuvB [Enterococcus faecalis JH1] gi|256989436|gb|EEU76738.1| holliday junction DNA helicase RuvB [Enterococcus faecalis E1Sol] gi|256992095|gb|EEU79397.1| holliday junction DNA helicase RuvB [Enterococcus faecalis Fly1] gi|256997361|gb|EEU83881.1| holliday junction DNA helicase ruvB [Enterococcus faecalis CH188] gi|257159313|gb|EEU89273.1| holliday junction DNA helicase RuvB [Enterococcus faecalis ARO1/DG] gi|257160612|gb|EEU90572.1| holliday junction DNA helicase ruvB [Enterococcus faecalis T11] Length = 332 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 172/325 (52%), Positives = 222/325 (68%), Gaps = 1/325 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS + +A I LRP+ L ++ GQ + L ++IEAAK R EALDH L GPPGL Sbjct: 1 MLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLLYGPPGL 60 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTT+A V+A E+ VN R+TSGP I +AGDL A+L LE DVLFIDEIHRL +VEE+L Sbjct: 61 GKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPRVVEEML 120 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF +D+MVG+G +A V L FTL+ ATTR G+L+ PL+DRFGI + +Y+ Sbjct: 121 YSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMEYYQE 180 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +DLK IV R A + + +E A EIA RSRGTPRIA RLL+RVRDFA+V I R I Sbjct: 181 QDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDGKIDRAI 240 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AD AL L +D G D +D + L + +GGGPVG+ T+S + E + +ED+ EPY+I Sbjct: 241 ADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDMYEPYLI 300 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330 Q+GFI+RTPRGR+ P A+ H G D Sbjct: 301 QKGFIKRTPRGRIATPFAYAHFGYD 325 >gi|242242913|ref|ZP_04797358.1| Holliday junction DNA helicase B [Staphylococcus epidermidis W23144] gi|242233628|gb|EES35940.1| Holliday junction DNA helicase B [Staphylococcus epidermidis W23144] Length = 334 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 168/328 (51%), Positives = 230/328 (70%), Gaps = 2/328 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD+ ++ + ED D+ L LRP L+++ GQ SNL+VFI+AAK R E LDHVL Sbjct: 1 MDKR-MVDQEFHNEDTDLELSLRPTQLKQYIGQSSIKSNLEVFIKAAKLRQEPLDHVLLF 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS + Sbjct: 60 GPPGLGKTTLSNIIANEMDVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD+++G+G ARS++++L FTL+ ATTR G LT PL+DRFG+ +RL Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRLDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y DLK I+ R A++ G + E+A E+A RSRGTPRIA RLL+RVRDF +V Sbjct: 180 EYYNENDLKEIITRTAEVLGTDIDKESALELARRSRGTPRIANRLLKRVRDFQQVNEDDQ 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I E AL L +D+ G D +D + + I + GGPVG++TI+ + E R IED+ Sbjct: 240 IYIETTKRALQLLQVDQQGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERVTIEDVY 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EP++IQ+GF++RTPRGR +A++H Sbjct: 300 EPFLIQKGFLERTPRGRKATALAFEHFN 327 >gi|116629086|ref|YP_814258.1| Holliday junction DNA helicase B [Lactobacillus gasseri ATCC 33323] gi|238853829|ref|ZP_04644194.1| holliday junction DNA helicase RuvB [Lactobacillus gasseri 202-4] gi|122273916|sp|Q045Q2|RUVB_LACGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116094668|gb|ABJ59820.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus gasseri ATCC 33323] gi|238833524|gb|EEQ25796.1| holliday junction DNA helicase RuvB [Lactobacillus gasseri 202-4] Length = 339 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 174/327 (53%), Positives = 229/327 (70%), Gaps = 1/327 (0%) Query: 3 DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 D E ++ ++ED I L LRP+ L ++ GQ + S +K++I+AAK R EALDHVL G Sbjct: 6 DEERIIGAESNEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKQRDEALDHVLLYG 65 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L DVLFIDEIHRL+ V Sbjct: 66 PPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAKPV 125 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF +D++VGEG + +V + L FTLI ATTR G L+ PL+DRFGI + Sbjct: 126 EEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEHMQ 185 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y I+DL+ I+QR + + + EAA E+A RSRGTPR+A RLL+RVRDFAEV + I Sbjct: 186 YYSIDDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEEAI 245 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 + +L L +D G DQ D + L M+ N+GGGPVGI+TI+A + E D IE++ E Sbjct: 246 SLATTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEVYE 305 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328 PY++Q+GFI RTPRGR + A+ LG Sbjct: 306 PYLLQKGFITRTPRGRSVTQKAYLQLG 332 >gi|42518564|ref|NP_964494.1| Holliday junction DNA helicase B [Lactobacillus johnsonii NCC 533] gi|227888711|ref|ZP_04006516.1| Holliday junction DNA helicase B [Lactobacillus johnsonii ATCC 33200] gi|47606086|sp|P61533|RUVB_LACJO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|41582849|gb|AAS08460.1| Holliday junction DNA helicase RuvB [Lactobacillus johnsonii NCC 533] gi|227850738|gb|EEJ60824.1| Holliday junction DNA helicase B [Lactobacillus johnsonii ATCC 33200] gi|329666840|gb|AEB92788.1| Holliday junction DNA helicase RuvB [Lactobacillus johnsonii DPC 6026] Length = 339 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 174/327 (53%), Positives = 229/327 (70%), Gaps = 1/327 (0%) Query: 3 DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 + E ++ S+ED I L LRP+ L ++ GQ + S +K++I+AAK R EALDHVL G Sbjct: 6 EEERIIGAESSEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKQRDEALDHVLLYG 65 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L DVLFIDEIHRL+ V Sbjct: 66 PPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAKPV 125 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF +D++VGEG + +V + L FTLI ATTR G L+ PL+DRFGI + Sbjct: 126 EEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEHMQ 185 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y +EDL+ I+QR + + + EAA E+A RSRGTPR+A RLL+RVRDFAEV + I Sbjct: 186 YYSVEDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEEAI 245 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 + +L L +D G DQ D + L M+ N+GGGPVGI+TI+A + E D IE++ E Sbjct: 246 SLVTTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEVYE 305 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328 PY++Q+GFI RTPRGR + A+ LG Sbjct: 306 PYLLQKGFITRTPRGRSVTQKAYLQLG 332 >gi|315612425|ref|ZP_07887338.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis ATCC 49296] gi|315315406|gb|EFU63445.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus sanguinis ATCC 49296] Length = 332 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 170/313 (54%), Positives = 221/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYARADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 320 KAYEHLGYEYNEK 332 >gi|292670919|ref|ZP_06604345.1| crossover junction endoribonuclease subunit B [Selenomonas noxia ATCC 43541] gi|292647540|gb|EFF65512.1| crossover junction endoribonuclease subunit B [Selenomonas noxia ATCC 43541] Length = 345 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 172/333 (51%), Positives = 232/333 (69%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 + + E L+S D LRPR L E+ GQ + SNL FI+AA +R EALDHVL Sbjct: 4 LYEDEELISFEEQAADGWQYSLRPRRLNEYIGQDKVKSNLSKFIQAALSRGEALDHVLLY 63 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL+ D+LFIDEIHRLS Sbjct: 64 GPPGLGKTTLAAIIANEMGANFRQTSAPAIERQGDLASLLTNLQTNDILFIDEIHRLSHH 123 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILY AMED +D+++G+GPSARS++++L+ FTLI ATT+ G L+ PL+DRFGI RL Sbjct: 124 VEEILYSAMEDHAIDIIIGKGPSARSLRLDLAPFTLIGATTKTGALSAPLRDRFGIQSRL 183 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y E L I++R A++ + + E A EIA RSRGTPR+A R+L+RVRD A+VA + Sbjct: 184 EYYTSEALLLIIERTAEILSVHIEREGALEIARRSRGTPRVANRILKRVRDIAQVAGEQM 243 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +++ + AL L +D+ G + D L ++ R F GGPVG++T++A LSE + IED+ Sbjct: 244 VSKAVTIEALEALEVDEKGLENKDRHMLEVMIRKFSGGPVGLKTLAAALSEMVETIEDVY 303 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EPY+IQ GFI RT RGR++ ++H+GI P Sbjct: 304 EPYLIQLGFIARTARGRIVTRGGYEHMGIPFPQ 336 >gi|182683239|ref|YP_001834986.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae CGSP14] gi|303255046|ref|ZP_07341122.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae BS455] gi|303259368|ref|ZP_07345345.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP-BS293] gi|303261123|ref|ZP_07347072.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP14-BS292] gi|303263451|ref|ZP_07349374.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae BS397] gi|303265743|ref|ZP_07351641.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae BS457] gi|303267826|ref|ZP_07353628.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae BS458] gi|238691188|sp|B2ISI4|RUVB_STRPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|182628573|gb|ACB89521.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae CGSP14] gi|302597876|gb|EFL64946.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae BS455] gi|302637960|gb|EFL68446.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP14-BS292] gi|302639302|gb|EFL69760.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP-BS293] gi|302642522|gb|EFL72867.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae BS458] gi|302644651|gb|EFL74900.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae BS457] gi|302647224|gb|EFL77448.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae BS397] Length = 332 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 218/309 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIVGNGVIDDVITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRMATA 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|257087894|ref|ZP_05582255.1| holliday junction DNA helicase RuvB [Enterococcus faecalis D6] gi|256995924|gb|EEU83226.1| holliday junction DNA helicase RuvB [Enterococcus faecalis D6] Length = 332 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 172/325 (52%), Positives = 222/325 (68%), Gaps = 1/325 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +LS + +A I LRP+ L ++ GQ + L ++IEAAK R EALDH L GPPGL Sbjct: 1 MLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLLYGPPGL 60 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTT+A V+A E+ VN R+TSGP I +AGDL A+L LE DVLFIDEIHRL +VEE+L Sbjct: 61 GKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPRVVEEML 120 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF +D+MVG+G +A V L FTL+ ATTR G+L+ PL+DRFGI + +Y+ Sbjct: 121 YSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMEYYQE 180 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +DLK IV R A + + +E A EIA RSRGTPRIA RLL+RVRDFA+V I R I Sbjct: 181 QDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDGKIDRAI 240 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AD AL L +D G D +D + L + +GGGPVG+ T+S + E + +ED+ EPY+I Sbjct: 241 ADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDMYEPYLI 300 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330 Q+GFI+RTPRGR+ P A+ H G D Sbjct: 301 QKGFIKRTPRGRIATPFAYAHFGYD 325 >gi|169350137|ref|ZP_02867075.1| hypothetical protein CLOSPI_00879 [Clostridium spiroforme DSM 1552] gi|169292920|gb|EDS75053.1| hypothetical protein CLOSPI_00879 [Clostridium spiroforme DSM 1552] Length = 330 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 170/330 (51%), Positives = 232/330 (70%), Gaps = 2/330 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M R +L N+S+ED S LRP + +E+ GQ NLKVF+ AAK R E LDHVL G Sbjct: 1 MTRNEVLDANISEEDE--SGLRPSSFDEYVGQTSLKENLKVFVGAAKLRDEPLDHVLLYG 58 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTT++ ++A E+G N + T+GP I K GDL A+LT LE DVLFIDEIHRL+ +V Sbjct: 59 PPGLGKTTMSMIIANEMGTNIKITTGPSIEKTGDLVAILTALEPGDVLFIDEIHRLNKVV 118 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILYPAMEDF +D+++G+ S RSV+I+L FTL+ ATTR G L+ PL+DRFGI +L Sbjct: 119 EEILYPAMEDFCVDVVIGKEASTRSVRIDLPPFTLVGATTRAGDLSAPLRDRFGIVSKLE 178 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y ++LK I+ R +++ + + D+A +AMRSRGTPRIA RL RRVRDFA+ + I Sbjct: 179 YYSEDELKVIIDRTSRVYQMPMDDDAKTALAMRSRGTPRIANRLFRRVRDFAQFNGEEII 238 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T+E AL RL +D++G D++D +YL I F GGPVG+E+++ + E +ED+ E Sbjct: 239 TKERTVEALDRLKVDRLGLDEVDHKYLLGIIHRFKGGPVGLESLAVSIGEEPRTLEDVYE 298 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331 PY++Q G I+RTPRGR+ A++HL I+ Sbjct: 299 PYLLQIGLIKRTPRGRIATYEAYKHLNIEF 328 >gi|322377193|ref|ZP_08051685.1| holliday junction DNA helicase RuvB [Streptococcus sp. M334] gi|321281906|gb|EFX58914.1| holliday junction DNA helicase RuvB [Streptococcus sp. M334] Length = 332 Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 219/309 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|212696228|ref|ZP_03304356.1| hypothetical protein ANHYDRO_00764 [Anaerococcus hydrogenalis DSM 7454] gi|212676857|gb|EEB36464.1| hypothetical protein ANHYDRO_00764 [Anaerococcus hydrogenalis DSM 7454] Length = 337 Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 164/308 (53%), Positives = 224/308 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ +A LK+FIE++ R EALDHVL GPPGLGKTTL+ ++A ELGVN Sbjct: 24 IRPKWLNDYIGQDKAKEKLKIFIESSLKREEALDHVLLQGPPGLGKTTLSNIIANELGVN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I + DLA++LTNL+ DVLFIDEIHR++ VEEILYPAMEDF LD++VG+G Sbjct: 84 IRITSGPAIERPSDLASILTNLDKGDVLFIDEIHRINRSVEEILYPAMEDFALDIIVGKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+S++I+L +FTL+ ATTR G+L+ PL+DRFG+ + LN Y+ +DL IV+R A + + Sbjct: 144 PNAQSIRIDLEKFTLVGATTRAGMLSAPLRDRFGVLLSLNLYDTKDLTKIVKRSADILDI 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A EIA RSRGTPRIA RLL+RVRD+A V + I E + L L +D MG D Sbjct: 204 PIDEKGAFEIARRSRGTPRIANRLLKRVRDYAIVKKDEIIDYETSCEGLELLEVDPMGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + + NF GGPVG++TI+A IED+ EPY++Q GF+ RTPRGR+L Sbjct: 264 NMDKKIVLTMHENFDGGPVGVDTIAASTGIENVTIEDVYEPYLLQIGFLTRTPRGRILTK 323 Query: 322 IAWQHLGI 329 A++H G+ Sbjct: 324 KAYEHYGL 331 >gi|260424675|ref|ZP_05732906.2| holliday junction DNA helicase RuvB [Dialister invisus DSM 15470] gi|260402788|gb|EEW96335.1| holliday junction DNA helicase RuvB [Dialister invisus DSM 15470] Length = 361 Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 171/316 (54%), Positives = 224/316 (70%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S+ D +RP+ L ++ GQ NL V+I AA++R EALDHVL GPPGLGKTT+A+ Sbjct: 30 SRRDEWQQTIRPQRLSDYIGQSTFKENLHVYISAARSRKEALDHVLLYGPPGLGKTTMAK 89 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +++ ELGV F+ TSGP I + GDLAA+L+ L++ DVLFIDEIHRL+ VEEILYPAMEDF Sbjct: 90 IISNELGVQFKVTSGPAIGRPGDLAAILSTLQEHDVLFIDEIHRLNRSVEEILYPAMEDF 149 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 LD+++G+G A S++I L FTLI ATTR G L+ PL+DRFGI + FY ++LK I+ Sbjct: 150 ALDIVMGKGAGANSIRIELPPFTLIGATTRAGALSAPLRDRFGIINHMQFYTADELKHIL 209 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A + + + + A EIA RSRGTPRIA RLL+R+RDFA+V I++EIA +L Sbjct: 210 IRAAGILNIKIEETGAEEIARRSRGTPRIANRLLKRIRDFAQVKGEGVISQEIAADSLSA 269 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +G D +D L I + F GGPVGI+TISA +SE R IED+ EPY++Q GFI R Sbjct: 270 LYVDDIGLDLIDREVLKAIIQKFNGGPVGIDTISASISEERATIEDICEPYLMQIGFISR 329 Query: 313 TPRGRLLMPIAWQHLG 328 TPRGR+ A+ HLG Sbjct: 330 TPRGRIATKAAYDHLG 345 >gi|332701177|ref|ZP_08421265.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfovibrio africanus str. Walvis Bay] gi|332551326|gb|EGJ48370.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfovibrio africanus str. Walvis Bay] Length = 322 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 168/306 (54%), Positives = 222/306 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L++F GQ + +NL V++ AA+ A+DH LF G PGLGKTTLAQ++A E+GVN Sbjct: 13 IRPRSLDDFVGQDDLRANLSVYLSAAREGRRAIDHTLFYGNPGLGKTTLAQIMASEMGVN 72 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 STSGPV+ ++GDLAA+LTNL D LFIDEIHR+ VEE+LYPAMEDF++DL++G+G Sbjct: 73 LVSTSGPVLERSGDLAAILTNLGRHDFLFIDEIHRMPANVEEVLYPAMEDFKIDLIIGQG 132 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+VKI L FTL+ ATTR+GLLT+PL+DRFG RL FY E L TI++R A + G Sbjct: 133 PGARTVKIELEPFTLVGATTRLGLLTSPLRDRFGCIFRLEFYSPEQLATIIRRAAGILGT 192 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 AV+D A I RSRGTPRIA RLLRRVRDFA + I E+A AL R+ +D G D Sbjct: 193 AVSDAGAMTIGRRSRGTPRIANRLLRRVRDFAVFQGKQIIDEELASQALDRMDVDDSGLD 252 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L+++ ++ GGPVG++T++ SE IED+ EPY+IQ GF++RT RGR+ Sbjct: 253 YMDRKILSVVINHYQGGPVGLKTLAVACSEEVRTIEDIYEPYLIQCGFLKRTSRGRVATA 312 Query: 322 IAWQHL 327 A+ HL Sbjct: 313 KAYAHL 318 >gi|326799875|ref|YP_004317694.1| Holliday junction ATP-dependent DNA helicase ruvB [Sphingobacterium sp. 21] gi|326550639|gb|ADZ79024.1| Holliday junction ATP-dependent DNA helicase ruvB [Sphingobacterium sp. 21] Length = 340 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 172/321 (53%), Positives = 231/321 (71%), Gaps = 1/321 (0%) Query: 9 SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 + ++S+ + ++ +LRP+ E+FTGQ + NL++F++AAK R EALDHVL GPPGLGK Sbjct: 9 AEHLSKTEKEVEKVLRPQAFEDFTGQHKILENLRIFVQAAKLRGEALDHVLLHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTL+ ++A E+GV + TSGPV+ K GDLA LLTNLE D+LFIDEIHRLS +VEE LY Sbjct: 69 TTLSHIIANEMGVGIKITSGPVLDKPGDLAGLLTNLEVGDILFIDEIHRLSPLVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMEDF++D+M+ GP+ARSV+++LS FTL+ ATTR GLLT PL+ RFGI RL +Y+ + Sbjct: 129 AMEDFKIDIMLETGPNARSVQLSLSPFTLVGATTRSGLLTAPLRARFGINARLQYYDAKL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV R A + +++E A EIA RSRGTPRIA LLRR RDFA++ I EIA Sbjct: 189 LTTIVLRSAGILRTPISEEGAYEIARRSRGTPRIANALLRRTRDFAQIKGNGNIDTEIAQ 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D+ G D++D R L I F GGPVG++TI+ + E IE++ EP++IQ+ Sbjct: 249 YALNALNVDEHGLDEMDNRILLTIIDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQE 308 Query: 308 GFIQRTPRGRLLMPIAWQHLG 328 G+I RT RGR +A++HLG Sbjct: 309 GYIMRTSRGRECTELAYKHLG 329 >gi|237740314|ref|ZP_04570795.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 2_1_31] gi|229422331|gb|EEO37378.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 2_1_31] Length = 338 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 162/309 (52%), Positives = 225/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++ +E+ GQ + + I+AA+ R +DH+L GPPGLGKTTLA V+A E+ N Sbjct: 20 LRPKSFDEYIGQENLKEKMSISIKAAQKRNMTVDHILLYGPPGLGKTTLAGVIANEMQAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+ VEEILYPAMED +LD+++G+G Sbjct: 80 LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNNTVEEILYPAMEDGELDIIIGKG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSA+S++I L FTLI ATTR GLL+ PL+DRFG+ ++ +Y I+++K I+ RGAK+ G+ Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNIDEIKAIIIRGAKILGV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +++E A EI+ RSRGTPRIA RLL+RVRD+ E+ TI A AL L +D G D Sbjct: 200 KISEEGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDVLSAKNALDMLGVDSSGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD + I N+ GGPVGIET+S L E R +E++ EPY+++ GF++RT RGR++ P Sbjct: 260 ELDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRVVTP 319 Query: 322 IAWQHLGID 330 A+QH D Sbjct: 320 KAYQHFKKD 328 >gi|323343744|ref|ZP_08083971.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella oralis ATCC 33269] gi|323095563|gb|EFZ38137.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella oralis ATCC 33269] Length = 344 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 169/307 (55%), Positives = 223/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +F+GQ NL+VF+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLKFTDFSGQKNVVENLEVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +YE + L I++R A + + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYEPDTLTKILKRSAGILKV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+AA EI+ RSRGTPRIA LLRRVRDFA+V + I +IA AL L ID+ G D Sbjct: 203 PIDDDAAIEISRRSRGTPRIANALLRRVRDFAQVKGSGRINTDIARFALKALNIDRYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVGI TI+ + E +E++ EP++I +GFI+RTPRGR+ Sbjct: 263 EIDNKILLTIIDKFRGGPVGISTIATAIGEDTGTVEEVYEPFLIMEGFIKRTPRGRMATA 322 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 323 LAFEHLG 329 >gi|307708099|ref|ZP_07644567.1| holliday junction DNA helicase RuvB [Streptococcus mitis NCTC 12261] gi|307615884|gb|EFN95089.1| holliday junction DNA helicase RuvB [Streptococcus mitis NCTC 12261] Length = 332 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 170/313 (54%), Positives = 220/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDLITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 320 KAYEHLGYEYSEK 332 >gi|212704639|ref|ZP_03312767.1| hypothetical protein DESPIG_02702 [Desulfovibrio piger ATCC 29098] gi|212672038|gb|EEB32521.1| hypothetical protein DESPIG_02702 [Desulfovibrio piger ATCC 29098] Length = 377 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 169/308 (54%), Positives = 231/308 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L++F GQ E +NL+V++ AA+ R ALDH LF G PGLGKTTLAQ++A ELGVN Sbjct: 67 VRPRSLDDFIGQEELRANLRVYLGAARERGGALDHTLFYGNPGLGKTTLAQIMAAELGVN 126 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGPV+ ++GDLAA+LTNL D+LF+DEIHR+ I VEE+LYPAMEDF+LDL++G+G Sbjct: 127 LVCTSGPVLERSGDLAAILTNLSRNDILFVDEIHRMPIAVEEVLYPAMEDFKLDLVIGQG 186 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+VKI+L FTL+ ATTR+GL++ PL+ RFGI +L FY +L +V R A + G+ Sbjct: 187 PAARTVKIDLEPFTLVGATTRMGLISAPLRGRFGILSQLEFYTPAELARVVLRTAHILGI 246 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 AVT + A EI RSRGTPRIA RLLRRVRDFA + IT E A AL R+ +D++G D Sbjct: 247 AVTPDGAEEIGRRSRGTPRIANRLLRRVRDFAMMGGHDVITAEQAAEALRRMDVDEIGLD 306 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L ++ ++ GGPVG++T++ SE IE++ EPY+IQ G ++RTPRGR++ Sbjct: 307 RMDRRLLEVMITHYDGGPVGLKTLAVACSEEVRTIEEIYEPYLIQCGLLKRTPRGRMVTA 366 Query: 322 IAWQHLGI 329 A++HL + Sbjct: 367 KAYRHLNL 374 >gi|261749237|ref|YP_003256922.1| Holliday junction DNA helicase RuvB [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497329|gb|ACX83779.1| Holliday junction DNA helicase RuvB [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 321 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 172/306 (56%), Positives = 219/306 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 L P+ ++F GQ + NLK+FI+AAK R E+LDH+LF GPPGLGKTTLA +VA ELGV Sbjct: 9 LNPKKFQDFVGQQDILDNLKIFIQAAKKRKESLDHILFHGPPGLGKTTLAHIVANELGVK 68 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSG V+ K GDLA LL +L DVLFIDEIHRLS IVEE LY AME++++D+++ G Sbjct: 69 ITVTSGSVLDKPGDLAGLLIHLNSNDVLFIDEIHRLSPIVEEYLYSAMENYKIDIIIDSG 128 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +ARSV+I+LS FTLI ATTR GLLT P++ RFGI RL +Y E LK IV R AK + Sbjct: 129 SNARSVQIDLSPFTLIGATTRSGLLTAPMRSRFGINGRLTYYRKELLKNIVTRRAKTLNI 188 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T+EA+ EIA RSRGTPRIA LLRRVRDFA++ TI I D L L +DK G D Sbjct: 189 PITEEASYEIANRSRGTPRIANALLRRVRDFAQIKGNGTIDIHICDLGLQALNVDKHGLD 248 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L I +F GGPVGI TI+ ++E D IE++ EP++IQ+G++ RTPRGR Sbjct: 249 EMDNRILASIIDHFKGGPVGINTIATAVNENPDTIEEVYEPFLIQEGYLVRTPRGRKATL 308 Query: 322 IAWQHL 327 +A++HL Sbjct: 309 LAYKHL 314 >gi|332077561|gb|EGI88022.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae GA41301] Length = 332 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 170/313 (54%), Positives = 219/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 320 KAYEHLGYEYSEK 332 >gi|332204266|gb|EGJ18331.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae GA47901] Length = 323 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 218/309 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 11 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 71 LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 251 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRMATA 310 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 311 KAYEHLGYE 319 >gi|222152256|ref|YP_002561431.1| Holliday junction DNA helicase RuvB [Streptococcus uberis 0140J] gi|254767443|sp|B9DSU1|RUVB_STRU0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|222113067|emb|CAR40423.1| Holliday junction DNA helicase, subunit B [Streptococcus uberis 0140J] Length = 334 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 165/306 (53%), Positives = 222/306 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + + L +FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLKEYIGQDKVKNQLSIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y+++DL IV+R + + + Sbjct: 140 DTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQVDDLTEIVERTSDIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ EAA E+A RSRGTPRIA RLL+RVRD+A++ IT+E+ D AL L +D G D Sbjct: 200 AIVHEAALELAKRSRGTPRIANRLLKRVRDYAQIMGDGVITKEMTDKALEMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATE 319 Query: 322 IAWQHL 327 A++HL Sbjct: 320 KAYRHL 325 >gi|322386388|ref|ZP_08060018.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus cristatus ATCC 51100] gi|321269612|gb|EFX52542.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus cristatus ATCC 51100] Length = 332 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 167/309 (54%), Positives = 223/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + LK+F EAAK R EALDH L GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLQEYIGQDKVKEQLKIFTEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI K+GDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGTG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTLI ATTR G+L+NPL+ RFGI + +YE DL IV+R A++ + Sbjct: 140 ETSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEASDLTEIVERTAEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRD+A++ I +I D AL L +D+ G D Sbjct: 200 DITHEAARELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YVDQKILRTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|254518552|ref|ZP_05130608.1| holliday junction DNA helicase RuvB [Clostridium sp. 7_2_43FAA] gi|226912301|gb|EEH97502.1| holliday junction DNA helicase RuvB [Clostridium sp. 7_2_43FAA] Length = 341 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 170/314 (54%), Positives = 227/314 (72%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED LRP++L E+ GQ + L +FI+AA+ R EALDHVL GPPGLGKTTLA ++ Sbjct: 12 EDGSSLSLRPQSLNEYIGQDKVKERLNIFIKAAQNRDEALDHVLLYGPPGLGKTTLANII 71 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A+E+ + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+ VEEILYPAMED+ L Sbjct: 72 AKEMDGELKITSGPAIERAGDLAAILTTLKDNDVLFIDEIHRLNRNVEEILYPAMEDYVL 131 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+++G+G +A+S++++L +FTLI ATTR+G+LT+PL+DRFG+ + +Y E LK I+ R Sbjct: 132 DIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDRFGVLCDMQYYTEEQLKEIIVR 191 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + +T+E A E+A RSRGTPRIA RLL+RVRD+A+V I+ + A AAL L Sbjct: 192 SAFVLECNITEEGAYELARRSRGTPRIANRLLKRVRDYAQVYSDSLISYKEAKAALELLE 251 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD++D + L I NF GGPVGIET+S + E IED+ EPY++Q GFI RT Sbjct: 252 VDSKGFDRVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTIEDVYEPYLLQTGFIVRTS 311 Query: 315 RGRLLMPIAWQHLG 328 RGR+ A++HLG Sbjct: 312 RGRVATDKAYEHLG 325 >gi|288800395|ref|ZP_06405853.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 299 str. F0039] gi|288332608|gb|EFC71088.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 299 str. F0039] Length = 345 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 165/307 (53%), Positives = 223/307 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +F+GQ + NL++F+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPPKFADFSGQQKVVDNLQIFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSAVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + + I++R A + + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDNDTIARIIKRSASIIRV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+AA EIA RSRGTPRIA LLRRVRDFA+V + I +IA AL L ID+ G D Sbjct: 203 PIDDDAAAEIAGRSRGTPRIANALLRRVRDFAQVKGSGRINIDIAQYALSALNIDQYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR+ Sbjct: 263 EIDNKILLTIIDKFKGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRMATE 322 Query: 322 IAWQHLG 328 +A++H G Sbjct: 323 LAYRHFG 329 >gi|149011129|ref|ZP_01832434.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP19-BS75] gi|147764765|gb|EDK71695.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP19-BS75] Length = 332 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 219/309 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDLITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATT 319 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 320 KAYEHLGYE 328 >gi|294782592|ref|ZP_06747918.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 1_1_41FAA] gi|294481233|gb|EFG29008.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 1_1_41FAA] Length = 338 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 161/309 (52%), Positives = 225/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++ +E+ GQ + + I+AA+ R +DH+L GPPGLGKTTLA V+A E+ N Sbjct: 20 LRPKSFDEYIGQENLKEKMNISIKAAQKRNMTVDHILLYGPPGLGKTTLAGVIANEMQAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+ VEEILYPAMED +LD+++G+G Sbjct: 80 LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNNTVEEILYPAMEDGELDIIIGKG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSA+S++I L FTLI ATTR GLL+ PL+DRFG+ ++ +Y I++++ I+ RGAK+ G+ Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNIDEIRAIIIRGAKILGV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +++E A EI+ RSRGTPRIA RLL+RVRD+ E+ TI A AL L +D G D Sbjct: 200 KISEEGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDVVSAKNALDMLGVDSSGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD + I N+ GGPVGIET+S L E R +E++ EPY+++ GF++RT RGR++ P Sbjct: 260 ELDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRVVTP 319 Query: 322 IAWQHLGID 330 A+QH D Sbjct: 320 KAYQHFKKD 328 >gi|212550683|ref|YP_002309000.1| Holliday junction DNA helicase RuvB [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548921|dbj|BAG83589.1| Holliday junction DNA helicase RuvB [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 339 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 171/334 (51%), Positives = 232/334 (69%), Gaps = 1/334 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + S +S+ + + ++LRP ++F GQ + NLK+F++AA+ R +ALDHVL Sbjct: 1 MDNYNIRSNQLSENEKEFENVLRPLFFKDFGGQDKIIENLKIFVQAARLRGDALDHVLLH 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ ++A EL V F+ TSGPV+ K GDLA +LT+L DVLFIDEIHRLS + Sbjct: 61 GPPGLGKTTLSSIIANELNVGFKVTSGPVLDKPGDLAGILTSLGKNDVLFIDEIHRLSPL 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EE LY AMED+++D+M+ G SARS++I + FTL+ ATTR GLLT+PL+ RFGI + L Sbjct: 121 IEEYLYSAMEDYRIDIMIDRGASARSIQIEIEPFTLVGATTRSGLLTSPLRTRFGINLHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y++E L +IV+R A + + D AA EIA RSRGTPRI LLRRVRDFA+V Sbjct: 181 EYYDVEALTSIVKRSATILNVLCDDSAAFEIASRSRGTPRICNALLRRVRDFAQVKGNGK 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I + IA AL L IDK G D++D + L I F GGPVG+ TIS L E IE++ Sbjct: 241 IEKSIACFALEALNIDKYGLDEIDNKILLTIMDKFNGGPVGLTTISIALGEDPGTIEEVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EP+++++GFI+RTPRGR + P+A+ H G I + Sbjct: 301 EPFLVKEGFIKRTPRGREVTPLAYMHFGRPISEK 334 >gi|332685821|ref|YP_004455595.1| holliday junction DNA helicase RuvB [Melissococcus plutonius ATCC 35311] gi|332369830|dbj|BAK20786.1| holliday junction DNA helicase RuvB [Melissococcus plutonius ATCC 35311] Length = 337 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 169/329 (51%), Positives = 224/329 (68%), Gaps = 1/329 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M + E L++ +Q+D + LRP+ L ++ GQ + L ++I+AA R E LDH L Sbjct: 1 MSEEERLMTAKSNQQDEILEKSLRPKFLTQYIGQEKVKQELTIYIKAACNRKEVLDHTLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA V A E+ V R+TSGP I + GDL A+L L DVLFIDEIHRL Sbjct: 61 YGPPGLGKTTLAMVTANEMDVGMRTTSGPAIERPGDLVAILNELTPGDVLFIDEIHRLPR 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LY AMEDF +D+MVG+G +A V +L FTLI ATTR G+L+ PL+DRFGI Sbjct: 121 TVEEMLYSAMEDFYVDIMVGQGTTAHPVHFSLPPFTLIGATTRAGMLSAPLRDRFGIISH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y +EDLK IV R + + + DE ACEIA RSRGTPRIA RLL+RVRDFA+V Sbjct: 181 MEYYTVEDLKEIVIRSSDIFQTEIMDEGACEIARRSRGTPRIANRLLKRVRDFAQVQSNG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 +T++IAD AL L +D G D +D + L + +GGGPVG+ TIS + E + +ED+ Sbjct: 241 VVTKDIADKALTLLQVDHQGLDYIDQKLLKTMIELYGGGPVGLSTISVNIGEETETVEDM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EP++IQ+GFI+RTPRGR+ +A++HLG Sbjct: 301 YEPFLIQKGFIKRTPRGRIATTLAYEHLG 329 >gi|313623658|gb|EFR93814.1| holliday junction DNA helicase RuvB [Listeria innocua FSL J1-023] Length = 335 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 178/329 (54%), Positives = 229/329 (69%), Gaps = 1/329 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + S V E+ + LRP+TL ++ GQ + +NL VFIEAA R EALDHVL Sbjct: 1 MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+G ++TSGP I + GDLA +LT+LE DVLFIDEI S Sbjct: 61 GPPGLGKTTLAMVIASEMGSEIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIXXXSRA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+ LD+++G GP+ARSV+++L FTLI ATTR GLL+ PL+DRFG+ L Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E L IV R + + + D A EIA RSRGTPRIA RLL+RVRDFA+V T Sbjct: 181 EFYTEEQLTEIVLRTSGILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +D G D +D + L I ++F GGPVG++TI+A + E R+ IED+ Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QRTPRGR+ A+ HLGI Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329 >gi|307704114|ref|ZP_07641042.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK597] gi|307622336|gb|EFO01345.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK597] Length = 323 Score = 342 bits (878), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 219/309 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 11 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 71 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDLITDKALTMLDVDHEGLD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 251 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 311 KAYEHLGYE 319 >gi|150003857|ref|YP_001298601.1| Holliday junction DNA helicase RuvB [Bacteroides vulgatus ATCC 8482] gi|254880917|ref|ZP_05253627.1| holliday junction DNA helicase RuvB [Bacteroides sp. 4_3_47FAA] gi|294775013|ref|ZP_06740542.1| Holliday junction DNA helicase RuvB [Bacteroides vulgatus PC510] gi|319639926|ref|ZP_07994654.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides sp. 3_1_40A] gi|166231464|sp|A6KZW5|RUVB_BACV8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|149932281|gb|ABR38979.1| Holliday junction DNA helicase RuvB [Bacteroides vulgatus ATCC 8482] gi|254833710|gb|EET14019.1| holliday junction DNA helicase RuvB [Bacteroides sp. 4_3_47FAA] gi|294451057|gb|EFG19528.1| Holliday junction DNA helicase RuvB [Bacteroides vulgatus PC510] gi|317388465|gb|EFV69316.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides sp. 3_1_40A] Length = 342 Score = 342 bits (878), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 170/307 (55%), Positives = 226/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F+GQ + NL++F++AA+ RAEALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLNFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS+++ LS FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L +I++R A + + Sbjct: 143 PSARSIQLELSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLTSIIRRSATILNV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +AA EIA RSRGTPRIA LLRRVRDFA+V + I EIA AL L ID+ G D Sbjct: 203 PCDVKAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGRIDVEIARFALEALNIDRYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 263 EIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFLKRTPRGREVTE 322 Query: 322 IAWQHLG 328 +A+ HLG Sbjct: 323 LAYMHLG 329 >gi|227550816|ref|ZP_03980865.1| crossover junction endoribonuclease subunit B [Enterococcus faecium TX1330] gi|257887928|ref|ZP_05667581.1| holliday junction DNA helicase RuvB [Enterococcus faecium 1,141,733] gi|257893271|ref|ZP_05672924.1| holliday junction DNA helicase RuvB [Enterococcus faecium 1,231,408] gi|257896454|ref|ZP_05676107.1| holliday junction DNA helicase RuvB [Enterococcus faecium Com12] gi|293377529|ref|ZP_06623724.1| Holliday junction DNA helicase RuvB [Enterococcus faecium PC4.1] gi|227180053|gb|EEI61025.1| crossover junction endoribonuclease subunit B [Enterococcus faecium TX1330] gi|257823982|gb|EEV50914.1| holliday junction DNA helicase RuvB [Enterococcus faecium 1,141,733] gi|257829650|gb|EEV56257.1| holliday junction DNA helicase RuvB [Enterococcus faecium 1,231,408] gi|257833019|gb|EEV59440.1| holliday junction DNA helicase RuvB [Enterococcus faecium Com12] gi|292643844|gb|EFF61959.1| Holliday junction DNA helicase RuvB [Enterococcus faecium PC4.1] Length = 333 Score = 342 bits (878), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 170/330 (51%), Positives = 226/330 (68%), Gaps = 1/330 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M E LLS + + + LRP+ L ++ GQ + L+++IEAA+ R E LDHVL Sbjct: 1 MTDEYLLSPETGENELSLEKSLRPQLLSQYIGQRKVKQELQIYIEAARNREEPLDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTT+A V+A E+ VN R+TSGP I + GDL A+L LE DVLFIDEIHRL + Sbjct: 61 GPPGLGKTTMAMVIANEMNVNIRTTSGPAIERPGDLVAILNELEAGDVLFIDEIHRLPRV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LY AMEDF +D+MVG+GP+A V L FTLI ATTR G+L+ PL+DRFGI + Sbjct: 121 VEEMLYSAMEDFYVDIMVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIISHM 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y+ +DL+ IV R + + + +E A EIA RSRGTPRIA RLL+RVRDFA+V Sbjct: 181 EYYDEQDLQEIVLRSSDIFQTEIIEEGALEIARRSRGTPRIANRLLKRVRDFAQVQGDGK 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R IAD AL L +D+ G D +D + L + +GGGPVG+ T+S + E R+ +ED+ Sbjct: 241 IDRPIADQALTLLQVDQAGLDYVDQKLLRTMIELYGGGPVGLSTLSVNIGEERETVEDMY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+IQ+GF++RTPRGR+ A++H G D Sbjct: 301 EPYLIQKGFLKRTPRGRMATAYAYEHFGYD 330 >gi|193213723|ref|YP_001994922.1| Holliday junction DNA helicase RuvB [Chloroherpeton thalassium ATCC 35110] gi|193087200|gb|ACF12475.1| Holliday junction DNA helicase RuvB [Chloroherpeton thalassium ATCC 35110] Length = 342 Score = 342 bits (877), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 223/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +F GQ + NLK+FI AA+ R +ALDHVL GPPGLGKTTLA +VA E+GV Sbjct: 22 IRPARFGDFAGQKKIVENLKIFIAAARERDDALDHVLLSGPPGLGKTTLAYIVAHEMGVG 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGPVI K G+LA LLT+LE DVLFIDEIHRL+ VEE LY AMEDF+LD+M+ G Sbjct: 82 IKATSGPVIDKPGNLAGLLTSLEKGDVLFIDEIHRLNPAVEEYLYSAMEDFKLDIMLDSG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV+I + FTL+ ATTR GLLT PL+ RFGI +RL++Y E L+ IVQR +++ G+ Sbjct: 142 PSARSVQIAIPPFTLVGATTRAGLLTAPLRARFGINLRLDYYSAELLEKIVQRASRIFGV 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRIA RLLRR RDFA+V I++ IA L L ID+ G D Sbjct: 202 EIEKDGAFEIARRSRGTPRIANRLLRRARDFAQVNGDLHISKNIAKRTLEALEIDEYGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R ++ + + GGPVG+ T++ + E D IE++ EPY+IQ+G+I RTPRGR+ Sbjct: 262 EMDKRLISALIEKYRGGPVGVATLAMAVGEEPDTIEEVYEPYLIQEGYIMRTPRGRVATD 321 Query: 322 IAWQHLGID 330 +A++ GID Sbjct: 322 LAYERFGID 330 >gi|299535651|ref|ZP_07048972.1| Holliday junction DNA helicase RuvB [Lysinibacillus fusiformis ZC1] gi|298728851|gb|EFI69405.1| Holliday junction DNA helicase RuvB [Lysinibacillus fusiformis ZC1] Length = 334 Score = 342 bits (877), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 173/331 (52%), Positives = 230/331 (69%), Gaps = 1/331 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E +++ D L LRP+ L ++ GQ + NL++FIEAAK R E+LDHVL GPP Sbjct: 3 ERMMASEAGSYDEQFELSLRPQKLAQYIGQHKVKENLQIFIEAAKLRQESLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA V+A E+ VN R TSGP I + GDLAA+L++LE DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLAAVIANEMNVNVRMTSGPAIERPGDLAAILSSLEPGDVLFIDEIHRLPRAIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD++VG+GP ARSV+++L FTL+ ATTR G L+ PL+DRFG+ +RL +Y Sbjct: 123 VLYPAMEDFCLDIVVGKGPEARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLLRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 + L IV R A L + + AA E+A RSRGTPRIA RLL+RVRD+A+V IT Sbjct: 183 DDRSLAEIVVRSAHLFEVEIEQVAAMEMARRSRGTPRIANRLLKRVRDYAQVLGDGMITE 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +A AL L +D G D +D + +T + F GGPVG++T++A + E R IED+ EPY Sbjct: 243 GLAQQALELLQVDPRGLDHIDHKLVTNMIERFRGGPVGLDTLAASIGEERVTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++Q G IQRTPRGR+ +A++H G + P + Sbjct: 303 LMQIGLIQRTPRGRVATHLAYEHFGYEYPQQ 333 >gi|224476738|ref|YP_002634344.1| Holliday junction DNA helicase RuvB [Staphylococcus carnosus subsp. carnosus TM300] gi|254767440|sp|B9DNE4|RUVB_STACT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|222421345|emb|CAL28159.1| holliday junction DNA helicase [Staphylococcus carnosus subsp. carnosus TM300] Length = 338 Score = 342 bits (877), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 166/328 (50%), Positives = 233/328 (71%), Gaps = 3/328 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++ ++ ++++ L LRP L+++ GQ SNL+VFI+AAK R E LDHVL Sbjct: 1 MDDR--MVDQSQHEDESSFELSLRPHFLKQYIGQASIKSNLEVFIKAAKLREEPLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A E+ VN R+ +GP I + GDLAA+L+ L+ DVLFIDEIHRLS Sbjct: 59 FGPPGLGKTTLSNIIANEMNVNIRTVTGPAIERPGDLAAILSGLQPGDVLFIDEIHRLSS 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +R Sbjct: 119 VVEEVLYPAMEDFYLDIVIGKGEEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y+ +LK I+ R A++ + +E+A E+A RSRGTPRIA RLL+RVRDF +V Sbjct: 179 LEYYKESELKDIIIRTAEVLNTEIDEESAVELAKRSRGTPRIANRLLKRVRDFQQVNEDD 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I E AL L +D G D +D + ++ I + GGPVG++TI+ + E R IED+ Sbjct: 239 MIYIETTKRALQLLQVDDYGLDYIDHKMMSCIINQYNGGPVGLDTIAVSIGEERITIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EP++IQ+GF++RTPRGR P+A++H Sbjct: 299 YEPFLIQKGFLERTPRGRKATPLAYEHF 326 >gi|322375001|ref|ZP_08049515.1| holliday junction DNA helicase RuvB [Streptococcus sp. C300] gi|321280501|gb|EFX57540.1| holliday junction DNA helicase RuvB [Streptococcus sp. C300] Length = 332 Score = 342 bits (877), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 169/313 (53%), Positives = 221/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I + AL L +D G D Sbjct: 200 EITHEAATELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITNKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 320 KAYEHLGYEYSEK 332 >gi|256847965|ref|ZP_05553409.1| Holliday junction DNA helicase RuvB [Lactobacillus coleohominis 101-4-CHN] gi|256715025|gb|EEU30002.1| Holliday junction DNA helicase RuvB [Lactobacillus coleohominis 101-4-CHN] Length = 337 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 169/330 (51%), Positives = 230/330 (69%), Gaps = 2/330 (0%) Query: 3 DREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 D E ++S + E+ + LRP+TL+++ GQ + LKV+I AAK+R+EALDHVL Sbjct: 4 DAENIMSNQATNENESVIEKSLRPQTLDDYIGQRKIKKELKVYITAAKSRSEALDHVLLY 63 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA VVA E+GV ++TSGP I K GDL ALL L+ D+LFIDEIHRL + Sbjct: 64 GPPGLGKTTLAMVVAHEMGVQIKTTSGPAIEKPGDLVALLNELQAGDILFIDEIHRLPKV 123 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LY AMEDF +D++VGEGP+A V L FTLI ATTR G L+ PL+DRFGI + Sbjct: 124 VEEMLYSAMEDFYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGALSAPLRDRFGIVEHM 183 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y+ +L+ I+ R A + +++ A E+A+RSRGTPRIA RLL+RVRDFA+VA Sbjct: 184 AYYDSAELQQIILRSAGIFKISIEQTGAHELALRSRGTPRIANRLLKRVRDFAQVAKKPA 243 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I EI AL L +D G D++D + L + + GGPVG++TI+A + E D IE++ Sbjct: 244 IDHEIVVKALHLLQVDGKGLDEVDRKVLLTMINLYHGGPVGVKTIAANIGEEVDTIEEMY 303 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY++Q GF+ RT RGR++ P A++HLG++ Sbjct: 304 EPYLLQIGFLSRTSRGRVVTPAAYEHLGLN 333 >gi|228478116|ref|ZP_04062727.1| holliday junction DNA helicase RuvB [Streptococcus salivarius SK126] gi|228250296|gb|EEK09549.1| holliday junction DNA helicase RuvB [Streptococcus salivarius SK126] Length = 334 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 163/309 (52%), Positives = 223/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ +E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A E+GVN Sbjct: 20 LRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE D+LFIDEIHR+ + VEE+LY AMED+ +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTL+ ATTR G+L+NPL+ RFGI + +YE+ DLK I++R +++ + Sbjct: 140 ETSRSVHLELPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLKEIIERTSEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRD+A++ I +IAD AL L +D G D Sbjct: 200 TITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIIDDKIADKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATA 319 Query: 322 IAWQHLGID 330 A++H+G D Sbjct: 320 KAYEHMGYD 328 >gi|298244052|ref|ZP_06967859.1| Holliday junction DNA helicase RuvB [Ktedonobacter racemifer DSM 44963] gi|297557106|gb|EFH90970.1| Holliday junction DNA helicase RuvB [Ktedonobacter racemifer DSM 44963] Length = 344 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 174/333 (52%), Positives = 237/333 (71%), Gaps = 3/333 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR L+S N+S E+ + LRPR L E+ GQ + NL + +EAA+ R E +DHVL Sbjct: 1 MSDR--LVSPNISDEEQILEGSLRPRRLAEYIGQEKIKENLGILLEAARRRNEPVDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL ++A E+GVN ++T+GP I AGDLA++LT+L+ +VLFIDE+HRL+ Sbjct: 59 YGPPGLGKTTLCNIIAAEMGVNLKTTAGPAIEHAGDLASILTSLQPGEVLFIDEVHRLAR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE LY AMEDF LD+++G+GPSARS++++L FT++ ATTRVG LT PL+DRFG R Sbjct: 119 AVEERLYSAMEDFALDVVIGKGPSARSLRLSLPPFTVVGATTRVGSLTAPLRDRFGAIYR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y+I L+ IV R A + + + EIA R+RGTPRI RLL+RVRD+A+V Sbjct: 179 MEYYDITSLEMIVHRSAGILKVPADEGGIKEIAGRARGTPRIVNRLLKRVRDYAQVRADG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 ITRE+A+ AL L +D++G DQ D LT I + F GGPVG++T++A SE + IED+ Sbjct: 239 VITREVANRALDALEVDEIGLDQTDRNMLTTIIQKFNGGPVGLDTLAASTSEDSETIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q GFI RTPRGR+ M A++HLG+ P Sbjct: 299 YEPYLLQLGFIARTPRGRVAMRAAYEHLGLTPP 331 >gi|302874956|ref|YP_003843589.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans 743B] gi|307690426|ref|ZP_07632872.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans 743B] gi|302577813|gb|ADL51825.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans 743B] Length = 342 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 169/313 (53%), Positives = 222/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + L +FIEAA+ R E LDHVL GPPGLGKTTLA ++A E+G Sbjct: 21 LRPQNLKEYIGQYKVKEKLSIFIEAAQRRHEPLDHVLLYGPPGLGKTTLATIIANEMGGT 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I +AGDLAA+LT L+D DVLFIDEIHR++ VEEILYPAMED+ LD+++G+G Sbjct: 81 LKITSGPAIERAGDLAAILTGLKDNDVLFIDEIHRMNRAVEEILYPAMEDYALDIVIGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SA+S++I+L +FTLI ATTR+GLLT PL+DRFG+ + +Y+ DLK I+ R + + L Sbjct: 141 ASAKSIRIDLPKFTLIGATTRIGLLTAPLRDRFGVMCPMEYYDESDLKEIISRSSSILDL 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +EAA E+A RSRGTPRIA RLL+RVRD+ +V AL L ID GFD Sbjct: 201 PIDEEAAMELAKRSRGTPRIANRLLKRVRDYCDVKSNGIANLSSTREALKLLDIDTEGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L+ I NF GGPVGIET+S + E +ED+ EPY++Q+GFI RTPRGR Sbjct: 261 TIDNKILSAIIINFKGGPVGIETLSYFIGEELGTLEDVYEPYLLQKGFILRTPRGRTATE 320 Query: 322 IAWQHLGIDIPHR 334 A++HL I I + Sbjct: 321 KAYRHLNIPINEK 333 >gi|315637758|ref|ZP_07892960.1| crossover junction ATP-dependent DNA helicase RuvB [Arcobacter butzleri JV22] gi|315477979|gb|EFU68710.1| crossover junction ATP-dependent DNA helicase RuvB [Arcobacter butzleri JV22] Length = 345 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 166/319 (52%), Positives = 231/319 (72%), Gaps = 1/319 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +ED + LRP +++ GQ + NL+VFI+A+K R EALDH+LF GPPGLGKTTL+ + Sbjct: 13 EEDNNEISLRPSNWDDYIGQEKIKKNLRVFIDASKKRKEALDHILFYGPPGLGKTTLSYL 72 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++ E+ N + T+GP+I K+GDLAA+LTNLE+ D+LFIDEIHRLS VEEILYPAMED++ Sbjct: 73 ISNEMNTNIKVTAGPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEILYPAMEDYR 132 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G GP+A++VKI+L RFTLI ATTR G+L+NPL++RFG+ R+ FY E+L I+Q Sbjct: 133 LDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQFYTHEELAKIIQ 192 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 + A G D+AA EI+ RSRGTPR+A RLLRRVRDF+EV + K I + AL L Sbjct: 193 KAAIKLGKNCEDDAALEISKRSRGTPRVALRLLRRVRDFSEVENEKYIHIKRCKYALDEL 252 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +++ GFD++D+ L ++ N G P+G+ TI+A LSE IED IEPY++ G+I+RT Sbjct: 253 GVNESGFDEMDINLLELLISN-RGKPMGLSTIAAALSEDEGTIEDAIEPYLLANGYIERT 311 Query: 314 PRGRLLMPIAWQHLGIDIP 332 RGR+ ++ + P Sbjct: 312 ARGRVASVKTYEMFRLSYP 330 >gi|224436522|ref|ZP_03657531.1| Holliday junction DNA helicase RuvB [Helicobacter cinaedi CCUG 18818] Length = 350 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 168/309 (54%), Positives = 229/309 (74%), Gaps = 2/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP EE+ GQ + NLKVFIEA+K R E LDH+LF GPPGLGKTTL+ ++A E+ N Sbjct: 34 LRPSVWEEYVGQEKIKKNLKVFIEASKRRNECLDHILFFGPPGLGKTTLSHIIAYEMDCN 93 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + ++ P+I K+GDLAA+LTNL + D+LFIDEIHRLS +EEILYPAMEDF+LD+++G G Sbjct: 94 IKVSAAPMIEKSGDLAAILTNLNEGDILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 153 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L+ FTLI ATTR G+L+NPL+DRFG+ RL FYE ++L IVQ AK Sbjct: 154 PAAQTLKIDLAPFTLIGATTRAGMLSNPLRDRFGMSFRLQFYEPKELALIVQTAAKKLSK 213 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADAALLRLAIDKMGF 260 +++ E A EIA RSRGTPRIA RLLRRVRDFA+V +++ I E AL L ++++GF Sbjct: 214 SLSQEGANEIARRSRGTPRIALRLLRRVRDFADVRDSQSEIDIECVHYALNELGVNELGF 273 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D+LDL YL ++A + G +G+ TI+A +SE IED+IEPY++ G+ +RT +GR+ Sbjct: 274 DELDLHYLAILAESRGRA-IGLNTIAAAMSEDEATIEDVIEPYLLANGYFERTAKGRIAT 332 Query: 321 PIAWQHLGI 329 P ++ L I Sbjct: 333 PKTYELLKI 341 >gi|260893477|ref|YP_003239574.1| Holliday junction DNA helicase RuvB [Ammonifex degensii KC4] gi|260865618|gb|ACX52724.1| Holliday junction DNA helicase RuvB [Ammonifex degensii KC4] Length = 347 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 175/327 (53%), Positives = 230/327 (70%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L++ +E+ L LRPR LEEF GQ + L++ EAA+ R E LDHVL GPPGL Sbjct: 7 LVAAEAGEEERQFELSLRPRRLEEFVGQEKVKEALRIACEAARRRREPLDHVLLSGPPGL 66 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA+++A E+GVN R TSGP I + GDLAA+LT+L DVLFIDEIHRL VEEIL Sbjct: 67 GKTTLARIIAAEMGVNVRVTSGPAIERPGDLAAILTSLSPGDVLFIDEIHRLHRAVEEIL 126 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED LDL++G+GP AR+V+++L FTL+ ATTR+GLL++PL+DRFG+ L +Y Sbjct: 127 YPAMEDRALDLVIGKGPGARAVRLSLPPFTLVGATTRMGLLSSPLRDRFGLAFHLEYYSP 186 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+ I++R A + G+ + E A IA R+RGTPR+A RLLRRVRD+ EV IT E Sbjct: 187 AELERILERTADILGIKLLPEGAAVIARRARGTPRVAIRLLRRVRDYVEVKAEGIITEEA 246 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL LA+D++G D +D RYL + FGGGP G+E ++A E +E+++EPY++ Sbjct: 247 AVEALDFLAVDELGLDPVDRRYLRCLIERFGGGPAGVEALAASTGEEVSTLEEVVEPYLL 306 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Q G I RTPRGRL P A++HLGI P Sbjct: 307 QVGLIVRTPRGRLATPEAYRHLGIKPP 333 >gi|303249146|ref|ZP_07335386.1| Holliday junction DNA helicase RuvB [Desulfovibrio fructosovorans JJ] gi|302489471|gb|EFL49418.1| Holliday junction DNA helicase RuvB [Desulfovibrio fructosovorans JJ] Length = 341 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 171/306 (55%), Positives = 222/306 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L EF GQ + +NL+VF+ AA + ALDH L GPPGLGKTTLAQ++A ELGVN Sbjct: 30 IRPSKLAEFIGQDDLRANLRVFLHAAMEQGRALDHSLLYGPPGLGKTTLAQIMASELGVN 89 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +T+GPV+ + GDLAA++TNL D+LFIDEIHR+ VEEILYPAMEDF+LDL++G+G Sbjct: 90 LVTTTGPVLERCGDLAAIVTNLRRGDILFIDEIHRMPPAVEEILYPAMEDFKLDLIIGQG 149 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+V+I+L FTL+ ATTR+GLLT+PL+DRFG+ RL FY E+L IV R A + G+ Sbjct: 150 PGARTVRIDLEPFTLVGATTRLGLLTSPLRDRFGVIFRLEFYSPEELARIVTRSAGILGI 209 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 VT A + RSRGTPRIA RLLRR+RDFA VA A T+ +A AL RL +D G D Sbjct: 210 GVTPGGALVVGQRSRGTPRIANRLLRRLRDFAVVAGASTLDETLAGEALARLDVDPHGLD 269 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + L I R++ GGPVG++T++ LSE IE++ EPY+IQ G I+RT RGR+ Sbjct: 270 QMDRKILETIIRHYEGGPVGVKTLAVALSEEVRTIEEIYEPYLIQCGLIKRTARGRVATA 329 Query: 322 IAWQHL 327 A+ H+ Sbjct: 330 KAYAHV 335 >gi|153003865|ref|YP_001378190.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter sp. Fw109-5] gi|171769468|sp|A7H910|RUVB_ANADF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|152027438|gb|ABS25206.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter sp. Fw109-5] Length = 342 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 168/312 (53%), Positives = 222/312 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP T EE+ GQ + N +V+ +AA+AR EALDHVL GPPGLGKT+LA ++ARELGV Sbjct: 24 LRPATFEEYVGQEKLVENFRVYAKAARARGEALDHVLLSGPPGLGKTSLAHILARELGVA 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGP + K GDLA LLT L RD+LFIDEIHRLS VEE LYPAMED++ D+++G G Sbjct: 84 LHVTSGPALVKKGDLAGLLTALAPRDILFIDEIHRLSPAVEEALYPAMEDYRFDVVLGAG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A+++++ L RFTL+ ATTR GLL +PL+DRF I RL +YE +L+ I R A+ L Sbjct: 144 LGAQTMEMKLERFTLVGATTRTGLLASPLRDRFPIQERLGYYEPTELREIAVRAARKLAL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V A E+A R+RGTPRIA RLL+R RDFA+V T+TREI + L RL +D G D Sbjct: 204 PVDPAGAEELARRARGTPRIAIRLLQRARDFAQVEGDGTLTREIVETTLERLEVDGRGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L ++ FGGGPVGI+ ++A + E RD +ED+ EP+++++GF+ RTPRGR+ +P Sbjct: 264 AMDRRILAVVLDTFGGGPVGIDAVAAAVGEERDTLEDVYEPFLVREGFLARTPRGRVALP 323 Query: 322 IAWQHLGIDIPH 333 A+ HLG + P Sbjct: 324 PAYAHLGRERPQ 335 >gi|229496853|ref|ZP_04390562.1| holliday junction DNA helicase RuvB [Porphyromonas endodontalis ATCC 35406] gi|229316264|gb|EEN82188.1| holliday junction DNA helicase RuvB [Porphyromonas endodontalis ATCC 35406] Length = 344 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 173/307 (56%), Positives = 221/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + F GQ NL VF++AA R ++LDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 24 LRPISFRSFRGQDTVVENLSVFVQAAAMRGDSLDHVLLHGPPGLGKTTLSNIIAAELGVG 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ K GDLA LLT+LE R VLFIDEIHRLS IVEE LY AMED+++D+M+ +G Sbjct: 84 IKITSGPVLDKPGDLAGLLTSLEPRGVLFIDEIHRLSPIVEEYLYSAMEDYRIDIMIDKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + + IV R A + G+ Sbjct: 144 PGARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDTKTIAGIVLRSAGILGV 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A ++EAA EIA RSRGTPRIA LLRRVRDFA+V TI EIA +L L ID G D Sbjct: 204 ACSEEAAAEIARRSRGTPRIANALLRRVRDFAQVRGNGTIDSEIAVFSLEALNIDSCGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + LT I FGGGPVG+ TI+ +SE IE++ EP++I++GFI+RTPRGR Sbjct: 264 NIDHKLLTTIIDKFGGGPVGVSTIATAMSEDVGTIEEVYEPFLIKEGFIKRTPRGREATA 323 Query: 322 IAWQHLG 328 A++HLG Sbjct: 324 HAYEHLG 330 >gi|212692652|ref|ZP_03300780.1| hypothetical protein BACDOR_02149 [Bacteroides dorei DSM 17855] gi|237709370|ref|ZP_04539851.1| holliday junction DNA helicase RuvB [Bacteroides sp. 9_1_42FAA] gi|237725064|ref|ZP_04555545.1| holliday junction DNA helicase RuvB [Bacteroides sp. D4] gi|265754553|ref|ZP_06089605.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_33FAA] gi|212664730|gb|EEB25302.1| hypothetical protein BACDOR_02149 [Bacteroides dorei DSM 17855] gi|229436802|gb|EEO46879.1| holliday junction DNA helicase RuvB [Bacteroides dorei 5_1_36/D4] gi|229456426|gb|EEO62147.1| holliday junction DNA helicase RuvB [Bacteroides sp. 9_1_42FAA] gi|263234667|gb|EEZ20235.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_33FAA] Length = 342 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 170/307 (55%), Positives = 226/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F+GQ + NL++F++AA+ RAEALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLNFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS+++ LS FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L +I++R A + + Sbjct: 143 PSARSIQLELSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLTSIIRRSANILNV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +AA EIA RSRGTPRIA LLRRVRDFA+V + I EIA AL L ID+ G D Sbjct: 203 PCDMKAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGRIDVEIARFALEALNIDRYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ L E IE++ EP++I++GF++RTPRGR + Sbjct: 263 EIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFLKRTPRGREVTE 322 Query: 322 IAWQHLG 328 +A+ HLG Sbjct: 323 LAYIHLG 329 >gi|313143025|ref|ZP_07805218.1| holliday junction ATP-dependent DNA helicase ruvB [Helicobacter cinaedi CCUG 18818] gi|313128056|gb|EFR45673.1| holliday junction ATP-dependent DNA helicase ruvB [Helicobacter cinaedi CCUG 18818] Length = 332 Score = 342 bits (876), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 168/309 (54%), Positives = 229/309 (74%), Gaps = 2/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP EE+ GQ + NLKVFIEA+K R E LDH+LF GPPGLGKTTL+ ++A E+ N Sbjct: 16 LRPSVWEEYVGQEKIKKNLKVFIEASKRRNECLDHILFFGPPGLGKTTLSHIIAYEMDCN 75 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + ++ P+I K+GDLAA+LTNL + D+LFIDEIHRLS +EEILYPAMEDF+LD+++G G Sbjct: 76 IKVSAAPMIEKSGDLAAILTNLNEGDILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 135 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L+ FTLI ATTR G+L+NPL+DRFG+ RL FYE ++L IVQ AK Sbjct: 136 PAAQTLKIDLAPFTLIGATTRAGMLSNPLRDRFGMSFRLQFYEPKELALIVQTAAKKLSK 195 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADAALLRLAIDKMGF 260 +++ E A EIA RSRGTPRIA RLLRRVRDFA+V +++ I E AL L ++++GF Sbjct: 196 SLSQEGANEIARRSRGTPRIALRLLRRVRDFADVRDSQSEIDIECVHYALNELGVNELGF 255 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D+LDL YL ++A + G +G+ TI+A +SE IED+IEPY++ G+ +RT +GR+ Sbjct: 256 DELDLHYLAILAESRGRA-IGLNTIAAAMSEDEATIEDVIEPYLLANGYFERTAKGRIAT 314 Query: 321 PIAWQHLGI 329 P ++ L I Sbjct: 315 PKTYELLKI 323 >gi|307721656|ref|YP_003892796.1| Holliday junction DNA helicase RuvB [Sulfurimonas autotrophica DSM 16294] gi|306979749|gb|ADN09784.1| Holliday junction DNA helicase RuvB [Sulfurimonas autotrophica DSM 16294] Length = 337 Score = 342 bits (876), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 168/319 (52%), Positives = 233/319 (73%), Gaps = 2/319 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 ++ +E+++++L RP E+ GQ + NL VFIEA+K R EALDHVLF GPPGLGKTTL Sbjct: 11 SLEEENSEVTL-RPDAWSEYIGQEQIKKNLSVFIEASKKREEALDHVLFYGPPGLGKTTL 69 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+ N + T+ P+I K+GDLAA+LTNLE+ D+LFIDEIHRLS VEEILY +ME Sbjct: 70 ALIIANEMNANIKVTAAPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEILYSSME 129 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+++D+++G GP+A++VKI+L RFTLI ATTR G+L+NPL+DRFG+ R+NFY ++L Sbjct: 130 DYRIDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRDRFGMSFRMNFYTHDELAK 189 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 I+ + + + EAA EIA RSRGTPRIA RLLRRVRDFAEVA+ + I + AL Sbjct: 190 IILQASNKLEREIIHEAAVEIAKRSRGTPRIALRLLRRVRDFAEVANEEHINHKRTQYAL 249 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L I+ GFD++DLR LT++A + G +G+ TI+A LSE +ED++EPY+I G++ Sbjct: 250 DELGINSHGFDEMDLRLLTLLASS-KGRAMGLSTIAAALSEDEGTVEDVLEPYLIANGYL 308 Query: 311 QRTPRGRLLMPIAWQHLGI 329 +RT +GR P + L + Sbjct: 309 ERTAKGRRATPATYDVLNM 327 >gi|322374043|ref|ZP_08048577.1| holliday junction DNA helicase RuvB [Streptococcus sp. C150] gi|321277009|gb|EFX54080.1| holliday junction DNA helicase RuvB [Streptococcus sp. C150] Length = 334 Score = 342 bits (876), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 163/309 (52%), Positives = 223/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ +E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A E+GVN Sbjct: 20 LRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE D+LFIDEIHR+ + VEE+LY AMED+ +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTL+ ATTR G+L+NPL+ RFGI + +YE+ DL IV+R +++ + Sbjct: 140 ETSRSVHLELPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRD+A++ I +IAD AL L +D+ G D Sbjct: 200 TITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGNGIIDDKIADKALTMLDVDREGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATA 319 Query: 322 IAWQHLGID 330 A++H+G D Sbjct: 320 KAYEHMGYD 328 >gi|126654018|ref|ZP_01725851.1| Holliday junction DNA helicase B [Bacillus sp. B14905] gi|126589492|gb|EAZ83636.1| Holliday junction DNA helicase B [Bacillus sp. B14905] Length = 334 Score = 342 bits (876), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 174/331 (52%), Positives = 231/331 (69%), Gaps = 1/331 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E +++ S D L LRP+ L ++ GQ + NL++FIEAAK R E+LDHVL GPP Sbjct: 3 ERMMASEASGYDEQFELSLRPQRLAQYIGQHKVKENLQIFIEAAKLRQESLDHVLLYGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA V+A E+ VN R TSGP I + GDLAA+L++LE DVLFIDEIHRL +EE Sbjct: 63 GLGKTTLAAVIANEMSVNVRMTSGPAIERPGDLAAILSSLEPGDVLFIDEIHRLPRAIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMEDF LD++VG+GP ARSV+++L FTL+ ATTR G L+ PL+DRFG+ +RL +Y Sbjct: 123 VLYPAMEDFCLDIVVGKGPEARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLLRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 + L IV R A L + + AA E+A RSRGTPRIA RLL+RVRD+A+V IT Sbjct: 183 DDISLAEIVARSAHLFEVEIEQIAAMEMARRSRGTPRIANRLLKRVRDYAQVLGDGMITE 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +A AL L +D G D +D + +T + F GGPVG++T++A + E R IED+ EPY Sbjct: 243 GLAKQALELLQVDPRGLDHIDHKLVTNMIERFRGGPVGLDTLAASIGEERVTIEDVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++Q G IQRTPRGR+ +A++H G + P + Sbjct: 303 LMQIGLIQRTPRGRVATHLAYEHFGYEYPQQ 333 >gi|291515131|emb|CBK64341.1| Holliday junction DNA helicase subunit RuvB [Alistipes shahii WAL 8301] Length = 335 Score = 342 bits (876), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 171/311 (54%), Positives = 222/311 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ LE F+GQ + NL +FI+AA R ++LDHVL GPPGLGKTTLA ++A E+G Sbjct: 17 IRPQELETFSGQDKIVENLHIFIKAALMRGDSLDHVLLHGPPGLGKTTLANIIANEMGAQ 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ K GDLA LLTNL DVLFIDEIHRLS IVEE LY AMED+++D+++ +G Sbjct: 77 LRVTSGPVLDKPGDLAGLLTNLNPGDVLFIDEIHRLSPIVEEYLYSAMEDYKIDIVLDKG 136 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I L+ FTLI ATTR GLLT+PL+ RFGI L +Y+ L IV+R A++ + Sbjct: 137 PSARSIQIELAPFTLIGATTRSGLLTSPLRARFGIQCHLEYYDAPVLAGIVRRSARILDV 196 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ D+AA E+A+RSRGTPRIA LLRRVRDFA V I EI AL L ID G D Sbjct: 197 SIDDDAAHEVALRSRGTPRIANALLRRVRDFAMVKGEGHIDLEITRIALAALNIDSRGLD 256 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + L I F GGPVG+ T++ + E IE++ EP++I++GF++RTPRGR P Sbjct: 257 QMDNKILGTIIEKFNGGPVGLNTVATAVGEEAGTIEEVYEPFLIKEGFLKRTPRGREATP 316 Query: 322 IAWQHLGIDIP 332 +A+QHLG P Sbjct: 317 LAYQHLGFTHP 327 >gi|73662427|ref|YP_301208.1| Holliday junction DNA helicase RuvB [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|97190353|sp|Q49Y79|RUVB_STAS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|72494942|dbj|BAE18263.1| Holliday junction DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 334 Score = 341 bits (875), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 170/329 (51%), Positives = 234/329 (71%), Gaps = 3/329 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++ +++ E++ L LRP L ++ GQ SNL+VFI+AAK R E LDHVL Sbjct: 1 MDDR--MVDQSMHDEESSFELSLRPTKLRQYIGQSTIKSNLEVFIKAAKMRQEPLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A E+ VN R SGP I + GDLAA+L++L+ DVLFIDEIHRLS Sbjct: 59 FGPPGLGKTTLSNIIANEMEVNIRIISGPSIERPGDLAAILSSLQPGDVLFIDEIHRLSS 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMEDF LD+++G+G ARS++I+L FTLI ATTR G LT PL+DRFG+ +R Sbjct: 119 VVEEVLYPAMEDFFLDIVIGKGEEARSIRIDLPPFTLIGATTRAGSLTAPLRDRFGVHLR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y+ +LK I+ R A++ G ++ DE+A E+A RSRGTPR+A RLL+RVRDF +V + Sbjct: 179 LEYYQELELKEIIVRTAEVLGTSIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDE 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I+ A+L L +D G D +D + + I + GGPVG++TI+ + E R IED+ Sbjct: 239 LISIATTRASLQLLQVDDEGLDYIDHKMMNCILEQYKGGPVGLDTIAVSIGEERVTIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EP++IQ+GFI+RTPRGR P A++H Sbjct: 299 YEPFLIQKGFIERTPRGRKATPYAFEHFS 327 >gi|289168690|ref|YP_003446959.1| holliday junction DNA helicase RuvB [Streptococcus mitis B6] gi|288908257|emb|CBJ23099.1| holliday junction DNA helicase RuvB [Streptococcus mitis B6] Length = 323 Score = 341 bits (875), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 169/309 (54%), Positives = 220/309 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 11 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +L+ DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 71 LKQTSGPVIEKAGDLVAILNDLDPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y+ DL IV+R A + + Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYDHADLTEIVERTADIFEM 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDLITDKALTMLDVDHEGLD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 251 YVDQKILRTMIEIYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310 Query: 322 IAWQHLGID 330 A++HLG + Sbjct: 311 KAYEHLGYE 319 >gi|55821907|ref|YP_140349.1| Holliday junction DNA helicase RuvB [Streptococcus thermophilus LMG 18311] gi|55823823|ref|YP_142264.1| Holliday junction DNA helicase RuvB [Streptococcus thermophilus CNRZ1066] gi|81820217|sp|Q5LXQ9|RUVB_STRT1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|81820382|sp|Q5M2B1|RUVB_STRT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|172045696|sp|Q03IE9|RUVB_STRTD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|55737892|gb|AAV61534.1| Holliday junction DNA helicase, subunit B [Streptococcus thermophilus LMG 18311] gi|55739808|gb|AAV63449.1| Holliday junction DNA helicase, subunit B [Streptococcus thermophilus CNRZ1066] Length = 333 Score = 341 bits (875), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 163/309 (52%), Positives = 223/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ +E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A E+GVN Sbjct: 20 LRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE D+LFIDEIHR+ + VEE+LY AMED+ +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTL+ ATTR G+L+NPL+ RFGI + +YE+ DL IV+R +++ + Sbjct: 140 ETSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRD+A++ I +IAD AL L +D G D Sbjct: 200 TITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGVIDDKIADQALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATA 319 Query: 322 IAWQHLGID 330 A++H+G D Sbjct: 320 KAYEHMGYD 328 >gi|282880544|ref|ZP_06289251.1| Holliday junction DNA helicase RuvB [Prevotella timonensis CRIS 5C-B1] gi|281305647|gb|EFA97700.1| Holliday junction DNA helicase RuvB [Prevotella timonensis CRIS 5C-B1] Length = 344 Score = 341 bits (875), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 170/313 (54%), Positives = 224/313 (71%), Gaps = 1/313 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +F+GQ + NL++F+EAAK R E LDH L GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLKFNDFSGQPKVVENLEIFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKLTSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +YE L I+ R A + + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINMHLEYYEPPTLVRIITRSATILKV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +EAA EIA RSRGTPRIA LLRRVRDFA+V I IA AL L ID+ G D Sbjct: 203 PIDEEAAYEIARRSRGTPRIANALLRRVRDFAQVKGNGGINTAIAKYALQALNIDQYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR+ Sbjct: 263 EIDNKILLTIIDKFRGGPVGLSTIATAIGEDTGTVEEVYEPFLIMEGFIKRTPRGRMATH 322 Query: 322 IAWQHLGIDIPHR 334 +A++HLG D P++ Sbjct: 323 LAYEHLGRD-PYK 334 >gi|15900193|ref|NP_344797.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae TIGR4] gi|111658327|ref|ZP_01409016.1| hypothetical protein SpneT_02000517 [Streptococcus pneumoniae TIGR4] gi|20140174|sp|Q97SR6|RUVB_STRPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|14971729|gb|AAK74437.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae TIGR4] Length = 332 Score = 341 bits (875), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 169/313 (53%), Positives = 219/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 320 KAYEHLGYEYSEK 332 >gi|57168275|ref|ZP_00367414.1| Holliday junction DNA helicase RuvB [Campylobacter coli RM2228] gi|57020649|gb|EAL57318.1| Holliday junction DNA helicase RuvB [Campylobacter coli RM2228] Length = 336 Score = 341 bits (875), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 163/309 (52%), Positives = 227/309 (73%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + + GQ NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E+G N Sbjct: 20 LRPSNFDGYIGQENIKKNLNVFISAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+ P+I K+GDLAA+LTNL + DVLFIDEIHRLS +EE+LYPAMED++LD+++G G Sbjct: 80 IKTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+ RL FY+ E+L I+Q+ A Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDEELAIILQKAALKLNK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +EAA EIA RSR TPRIA RLL+RVRDFA+V +TIT+E A AL L ++++GFD Sbjct: 200 SCENEAALEIAKRSRSTPRIALRLLKRVRDFADVNDEETITKERAKEALNSLGVNELGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +DLRYL ++ P+G+ +I+A LSE + IED+IEPY++ G+I+RT +GR+ Sbjct: 260 AMDLRYLELLTEA-KRKPIGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIAST 318 Query: 322 IAWQHLGID 330 ++ L ++ Sbjct: 319 KSFSVLKLN 327 >gi|284040070|ref|YP_003390000.1| Holliday junction DNA helicase RuvB [Spirosoma linguale DSM 74] gi|283819363|gb|ADB41201.1| Holliday junction DNA helicase RuvB [Spirosoma linguale DSM 74] Length = 342 Score = 341 bits (875), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 171/313 (54%), Positives = 221/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + E+FTGQ +A NL+VF++AA R EALDHVL GPPGLGKTTL+ ++A EL Sbjct: 24 LRPLSFEDFTGQAKALENLEVFVKAAMQRGEALDHVLLHGPPGLGKTTLSHIIANELSAG 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ K DLA LLTNL+ DVLFIDEIHRL+ IVEE LY AMED+++D+M+ G Sbjct: 84 IKMTSGPVLDKPSDLAGLLTNLQPNDVLFIDEIHRLNPIVEEYLYSAMEDYKIDIMLDSG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V+I L+ FTLI ATTR G+LT PL+ RFGI RL +Y+ + L TIVQR A + G Sbjct: 144 PNARTVQIKLNPFTLIGATTRAGMLTAPLRARFGISSRLEYYDAQLLTTIVQRSAAILGT 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRIA LLRR RDFA+V I +IA+ AL L +D+ G D Sbjct: 204 PIDETGAYEIARRSRGTPRIANNLLRRTRDFAQVKGNGYINVDIAEIALSALEVDQNGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L I F GGPVG+ TI+ E + IE++ EP++IQ+GF++RT RGR Sbjct: 264 EMDNRILLTIIEKFKGGPVGLSTIATACGEESETIEEVYEPFLIQEGFLKRTSRGREATE 323 Query: 322 IAWQHLGIDIPHR 334 A+ HLGI P++ Sbjct: 324 RAYIHLGIVPPYK 336 >gi|116628600|ref|YP_821219.1| Holliday junction DNA helicase RuvB [Streptococcus thermophilus LMD-9] gi|116101877|gb|ABJ67023.1| Holliday junction DNA helicase subunit RuvB [Streptococcus thermophilus LMD-9] gi|312279261|gb|ADQ63918.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptococcus thermophilus ND03] Length = 318 Score = 341 bits (875), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 163/309 (52%), Positives = 223/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ +E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A E+GVN Sbjct: 5 LRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVN 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE D+LFIDEIHR+ + VEE+LY AMED+ +D+M+G G Sbjct: 65 LKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAG 124 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTL+ ATTR G+L+NPL+ RFGI + +YE+ DL IV+R +++ + Sbjct: 125 ETSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEM 184 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRD+A++ I +IAD AL L +D G D Sbjct: 185 TITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGVIDDKIADQALTMLDVDHEGLD 244 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 245 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATA 304 Query: 322 IAWQHLGID 330 A++H+G D Sbjct: 305 KAYEHMGYD 313 >gi|330719271|ref|ZP_08313871.1| Holliday junction DNA helicase RuvB [Leuconostoc fallax KCTC 3537] Length = 351 Score = 341 bits (875), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 166/308 (53%), Positives = 218/308 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ L+V+I AAK R EALDHVL GPPGLGKTTLA ++A E+ V+ Sbjct: 38 LRPQLLNDYIGQSALKEELRVYITAAKQREEALDHVLLFGPPGLGKTTLAMIIANEMAVH 97 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I K GDL A+L LE D+LFIDEIHRL+ VEEILY AMEDF +D+MVG+G Sbjct: 98 IKTTSGPAIEKPGDLVAVLNELEPGDILFIDEIHRLATNVEEILYSAMEDFYVDIMVGQG 157 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V L FTLI ATTR G+L+ PL+DRFGI + +Y ++L+ IV R A + Sbjct: 158 PTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINSMQYYNADELQQIVTRSADIFAA 217 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A IA+RSRGTPRIA RLL+RVRDFA+V K I + I D AL +L +D G D Sbjct: 218 PIRSEGALAIALRSRGTPRIANRLLKRVRDFAQVQGKKAIDKMIVDVALKKLRVDDKGLD 277 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D ++L + + GGPVG+ TISA + E + +E ++EPY++Q GF+QRTPRGR++ Sbjct: 278 ETDHKFLQTMIDFYNGGPVGLNTISANIGEESETLETMVEPYLLQIGFLQRTPRGRVVTE 337 Query: 322 IAWQHLGI 329 A+QHLGI Sbjct: 338 QAYQHLGI 345 >gi|322410848|gb|EFY01756.1| Holliday junction DNA helicase RuvB [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 332 Score = 341 bits (875), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 166/311 (53%), Positives = 221/311 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L +FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPKYLREYIGQDKVKEQLNIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y+ DL I++R A + + Sbjct: 140 DTSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEADLTEIIERTANIFDM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPRIA RLL+RVRD+A++ IT +I D AL L +D+ G D Sbjct: 200 EIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVITAQITDKALTMLDVDREGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GF+ RT GR++ Sbjct: 260 YVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVVTE 319 Query: 322 IAWQHLGIDIP 332 A++HLG P Sbjct: 320 KAYRHLGYPYP 330 >gi|307299319|ref|ZP_07579120.1| Holliday junction DNA helicase RuvB [Thermotogales bacterium mesG1.Ag.4.2] gi|306915115|gb|EFN45501.1| Holliday junction DNA helicase RuvB [Thermotogales bacterium mesG1.Ag.4.2] Length = 349 Score = 341 bits (875), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 173/333 (51%), Positives = 230/333 (69%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M E L+ QED I LRP+TL+E+ GQ + L+V IEAAK R EALDH L G Sbjct: 1 MREERFLTPGEVQEDNSIKSLRPKTLQEYIGQNQIRQRLRVAIEAAKVRREALDHTLLAG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A ELG TSGPVI K GDLAA+LT LE DVLFIDEIHRL+ V Sbjct: 61 PPGLGKTTLAHIIANELGSEIYVTSGPVIEKQGDLAAILTGLERDDVLFIDEIHRLNRSV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EEILY AMEDFQLD+M+G+GPSARS++++L+ FTL+ ATTR G + PL++RFG+ + + Sbjct: 121 EEILYSAMEDFQLDIMIGKGPSARSIRLDLNPFTLVGATTRSGFIGAPLRNRFGMILEME 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY DLK I+ R A L G ++ D+AA +A RSRGTPRIA RLLRRVRD V I Sbjct: 181 FYPDRDLKQIILRSATLLGTSIRDDAALLLARRSRGTPRIANRLLRRVRDIVTVEGESEI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T E ++A+ L+ID G D +D + L+++ ++ GGP G++ I+A L + I ++ E Sbjct: 241 TMETVESAMTLLSIDSEGLDSMDKKLLSILIESYNGGPAGVKAIAASLGIEPETISEVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 P+++Q GF+ RT RGR++ A++HLG+ + R Sbjct: 301 PFLLQSGFLVRTSRGRMVTEKAYRHLGLPLEGR 333 >gi|300775969|ref|ZP_07085828.1| crossover junction ATP-dependent DNA helicase RuvB [Chryseobacterium gleum ATCC 35910] gi|300505102|gb|EFK36241.1| crossover junction ATP-dependent DNA helicase RuvB [Chryseobacterium gleum ATCC 35910] Length = 340 Score = 341 bits (874), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 172/330 (52%), Positives = 231/330 (70%), Gaps = 4/330 (1%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 D+E + QE+ +RP++ ++F GQ + NL+VF+ AAK R ALDHVL GP Sbjct: 8 DKENYSREELMQEEQ----IRPQSFKDFAGQRKTLENLEVFVTAAKRRGGALDHVLLHGP 63 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A ELGVN + TSGPV+ K G LA LLTNLE+ DVLFIDEIHRLS +VE Sbjct: 64 PGLGKTTLANIIANELGVNCKITSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVE 123 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E LY AMED+++D+M+ GP+ARSV+I L+ FTL+ ATTR G+LT P+ RFGI RL + Sbjct: 124 EYLYSAMEDYKIDIMLETGPNARSVQIGLNPFTLVGATTRSGMLTKPMLARFGIQSRLEY 183 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y IE L I+QR A++ G+ + ++AA EIA RSRGTPRIA LLRRVRDFAE+ I Sbjct: 184 YSIELLSMIIQRSARVLGVIIYEDAAIEIARRSRGTPRIANALLRRVRDFAEIKGNGEIE 243 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 +I AL L +D+ G D++D + + ++ NF G PVGI ++ + E + +E++ EP Sbjct: 244 IKITKYALDSLNVDEFGLDEMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEP 303 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++IQ+GFI RTPRGR + A++HL I P Sbjct: 304 FLIQEGFIIRTPRGREVTDKAYRHLNITRP 333 >gi|224023566|ref|ZP_03641932.1| hypothetical protein BACCOPRO_00269 [Bacteroides coprophilus DSM 18228] gi|224016788|gb|EEF74800.1| hypothetical protein BACCOPRO_00269 [Bacteroides coprophilus DSM 18228] Length = 341 Score = 341 bits (874), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 170/307 (55%), Positives = 226/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F+GQ + NL++F++AA+ RAEALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLQFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ L I+ R A + G+ Sbjct: 143 PSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDTILSRIILRSAGILGV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +AA EIA RSRGTPRIA LLRRVRDFA+V + I EIA AL L ID+ G D Sbjct: 203 PCDVDAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGRIDVEIARYALEALNIDRYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + L I F GGPVG+ TI+ L E +E++ EP++I++GF++RTPRGR + Sbjct: 263 QIDNKLLCTIIDKFKGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFLKRTPRGREVTE 322 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 323 LAYKHLG 329 >gi|312862354|ref|ZP_07722597.1| Holliday junction DNA helicase RuvB [Streptococcus vestibularis F0396] gi|311101997|gb|EFQ60197.1| Holliday junction DNA helicase RuvB [Streptococcus vestibularis F0396] Length = 333 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 163/309 (52%), Positives = 223/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ +E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A E+GVN Sbjct: 20 LRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE D+LFIDEIHR+ + VEE+LY AMED+ +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTL+ ATTR G+L+NPL+ RFGI + +YE+ DL IV+R +++ + Sbjct: 140 ETSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRD+A++ I +IAD AL L +D G D Sbjct: 200 TITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIIDDKIADKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATV 319 Query: 322 IAWQHLGID 330 A++H+G D Sbjct: 320 KAYEHMGYD 328 >gi|257453133|ref|ZP_05618432.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_5R] gi|257467391|ref|ZP_05631702.1| Holliday junction DNA helicase RuvB [Fusobacterium gonidiaformans ATCC 25563] gi|315918521|ref|ZP_07914761.1| holliday junction DNA helicase ruvB [Fusobacterium gonidiaformans ATCC 25563] gi|317059668|ref|ZP_07924153.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 3_1_5R] gi|313685344|gb|EFS22179.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 3_1_5R] gi|313692396|gb|EFS29231.1| holliday junction DNA helicase ruvB [Fusobacterium gonidiaformans ATCC 25563] Length = 334 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 222/309 (71%), Gaps = 3/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++ E+ GQ + + I+AAK R +DHVL GPPGLGKTTLA V+A E+G N Sbjct: 20 LRPKSFREYIGQESLKEKIFISIQAAKRRGSVIDHVLLYGPPGLGKTTLAGVIANEMGAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ KAGDLAA+LT+LE+ DVLFIDEIHRL+ VEEILYPAMED +LD+++G+G Sbjct: 80 LKITSGPVLEKAGDLAAILTSLEENDVLFIDEIHRLNTAVEEILYPAMEDKELDIIIGKG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS++I L FTLI ATTR GLL+ PL+DRFGI ++ +Y E++K I+ RG K+ + Sbjct: 140 PAARSIRIELPNFTLIGATTRAGLLSAPLRDRFGISHKMEYYTEEEVKEIILRGGKILEI 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V E A E+A RSRGTPRIA RLL+RVRD+AE+ IT+EIA AL L +D G D Sbjct: 200 EVEGEGAEELAKRSRGTPRIANRLLKRVRDYAEIRGKGIITQEIAIQALNLLGVDMEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD L + N+GGGPVGIET+S L E R +E++ EPY+IQ+GF++RT RGR+ Sbjct: 260 DLDRNILQAMFENYGGGPVGIETLSLLLGEDRRTLEEVYEPYLIQKGFLKRTNRGRIATS 319 Query: 322 IA---WQHL 327 A W+ + Sbjct: 320 KAIAYWEKM 328 >gi|307711004|ref|ZP_07647426.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK321] gi|307616966|gb|EFN96144.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK321] Length = 323 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 169/309 (54%), Positives = 218/309 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 11 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 71 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGVIDDVITDKALTMLDVDHEGLD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 251 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310 Query: 322 IAWQHLGID 330 ++HLG + Sbjct: 311 KTYEHLGYE 319 >gi|69250108|ref|ZP_00605100.1| Holliday junction DNA helicase RuvB [Enterococcus faecium DO] gi|257878808|ref|ZP_05658461.1| holliday junction DNA helicase RuvB [Enterococcus faecium 1,230,933] gi|257881446|ref|ZP_05661099.1| holliday junction DNA helicase RuvB [Enterococcus faecium 1,231,502] gi|257885717|ref|ZP_05665370.1| holliday junction DNA helicase RuvB [Enterococcus faecium 1,231,501] gi|257890667|ref|ZP_05670320.1| holliday junction DNA helicase RuvB [Enterococcus faecium 1,231,410] gi|258615121|ref|ZP_05712891.1| Holliday junction DNA helicase RuvB [Enterococcus faecium DO] gi|260558374|ref|ZP_05830570.1| Holliday junction DNA helicase RuvB [Enterococcus faecium C68] gi|261207081|ref|ZP_05921770.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TC 6] gi|289565917|ref|ZP_06446357.1| Holliday junction DNA helicase RuvB [Enterococcus faecium D344SRF] gi|293556857|ref|ZP_06675418.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1039] gi|293563769|ref|ZP_06678208.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1162] gi|293567840|ref|ZP_06679181.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1071] gi|294614615|ref|ZP_06694519.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1636] gi|294618497|ref|ZP_06698061.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1679] gi|294621206|ref|ZP_06700391.1| holliday junction DNA helicase RuvB [Enterococcus faecium U0317] gi|314938832|ref|ZP_07846103.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133a04] gi|314943638|ref|ZP_07850392.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133C] gi|314948717|ref|ZP_07852090.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0082] gi|314952167|ref|ZP_07855185.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133A] gi|314991859|ref|ZP_07857316.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133B] gi|314996572|ref|ZP_07861607.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133a01] gi|68194010|gb|EAN08567.1| Holliday junction DNA helicase RuvB [Enterococcus faecium DO] gi|257813036|gb|EEV41794.1| holliday junction DNA helicase RuvB [Enterococcus faecium 1,230,933] gi|257817104|gb|EEV44432.1| holliday junction DNA helicase RuvB [Enterococcus faecium 1,231,502] gi|257821573|gb|EEV48703.1| holliday junction DNA helicase RuvB [Enterococcus faecium 1,231,501] gi|257827027|gb|EEV53653.1| holliday junction DNA helicase RuvB [Enterococcus faecium 1,231,410] gi|260075548|gb|EEW63854.1| Holliday junction DNA helicase RuvB [Enterococcus faecium C68] gi|260078709|gb|EEW66411.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TC 6] gi|289162290|gb|EFD10150.1| Holliday junction DNA helicase RuvB [Enterococcus faecium D344SRF] gi|291589425|gb|EFF21232.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1071] gi|291592517|gb|EFF24122.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1636] gi|291595254|gb|EFF26583.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1679] gi|291599202|gb|EFF30234.1| holliday junction DNA helicase RuvB [Enterococcus faecium U0317] gi|291600941|gb|EFF31232.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1039] gi|291604250|gb|EFF33745.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1162] gi|313589261|gb|EFR68106.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133a01] gi|313593564|gb|EFR72409.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133B] gi|313595699|gb|EFR74544.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133A] gi|313597675|gb|EFR76520.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133C] gi|313641843|gb|EFS06423.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133a04] gi|313644889|gb|EFS09469.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0082] Length = 333 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 170/330 (51%), Positives = 226/330 (68%), Gaps = 1/330 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M E LLS + + + LRP+ L ++ GQ + L+++IEAA+ R E LDHVL Sbjct: 1 MTDEYLLSPESGENELSLEKSLRPQLLSQYIGQRKVKQELQIYIEAARNREEPLDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTT+A V+A E+ VN R+TSGP I + GDL A+L LE DVLFIDEIHRL + Sbjct: 61 GPPGLGKTTMAMVIANEMTVNIRTTSGPAIERPGDLVAILNELEAGDVLFIDEIHRLPRV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LY AMEDF +D+MVG+GP+A V L FTLI ATTR G+L+ PL+DRFGI + Sbjct: 121 VEEMLYSAMEDFYVDIMVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIISHM 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y+ +DL+ IV R + + + +E A EIA RSRGTPRIA RLL+RVRDFA+V Sbjct: 181 EYYDEQDLQEIVLRSSDIFQTEIIEEGALEIARRSRGTPRIANRLLKRVRDFAQVQGDGK 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R IAD AL L +D+ G D +D + L + +GGGPVG+ T+S + E R+ +ED+ Sbjct: 241 IDRPIADQALTLLQVDQAGLDYVDQKLLRTMIELYGGGPVGLSTLSVNIGEERETVEDMY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+IQ+GF++RTPRGR+ A++H G D Sbjct: 301 EPYLIQKGFLKRTPRGRIATAYAYEHFGYD 330 >gi|328950019|ref|YP_004367354.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinithermus hydrothermalis DSM 14884] gi|328450343|gb|AEB11244.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinithermus hydrothermalis DSM 14884] Length = 325 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 176/312 (56%), Positives = 225/312 (72%), Gaps = 1/312 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+E+ GQ L+V+++AAKAR E LDH+L GPPGLGKTTLA V+A ELGVN Sbjct: 6 LRPQTLDEYVGQTRLKEKLRVYLQAAKARGEPLDHMLLFGPPGLGKTTLAHVIANELGVN 65 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R TSGP I K GDLAA+LTN LE+ D+LFIDEIHRLS EE LYPAMEDF++D+++G+ Sbjct: 66 IRVTSGPAIEKPGDLAAILTNSLEEGDILFIDEIHRLSRTAEEHLYPAMEDFKIDIVLGQ 125 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR++++ L RFTLI ATTR GL+++PL+ RFGI L FY E+L V R A+L G Sbjct: 126 GPAARTLRLELPRFTLIGATTRPGLISSPLRSRFGIIEHLEFYTPEELAEGVARDARLLG 185 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 L + EAA EI R+RGT RIA RL RRVRDFAEVA +T E A AL L +D +G Sbjct: 186 LEIEHEAALEIGRRARGTMRIAKRLFRRVRDFAEVAGDPRVTLERAREALDALGLDALGL 245 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D D + L I F GGPVG+ET++ LSE +E++ EP++IQ G I+RTPRGR+ Sbjct: 246 DARDRKILETILTRFAGGPVGLETLATALSEDPQTLEEVHEPFLIQLGLIKRTPRGRVAT 305 Query: 321 PIAWQHLGIDIP 332 A++HLG+ +P Sbjct: 306 ERAYRHLGLPVP 317 >gi|312866523|ref|ZP_07726740.1| Holliday junction DNA helicase RuvB [Streptococcus downei F0415] gi|311097954|gb|EFQ56181.1| Holliday junction DNA helicase RuvB [Streptococcus downei F0415] Length = 332 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 167/309 (54%), Positives = 224/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+T +E+ GQ + L +FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQTFKEYIGQDKVKDQLAIFIEAAKLRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL IV+R A++ Sbjct: 140 EASRSVHLDLPPFTLIGATTRAGMLSNPLRARFGINGHMEYYEEVDLTEIVERTAEIFEA 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA ++A RSRGTPRIA RLL+RVRD+A++ I +IAD AL L +D+ G D Sbjct: 200 EITHEAAIQLAKRSRGTPRIANRLLKRVRDYAQIIGDGLIDNKIADKALTLLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YIDQKILRTMIEMYGGGPVGLGTLSINIAEERETVEDMYEPYLIQKGFMMRTRSGRVATA 319 Query: 322 IAWQHLGID 330 A++HLG++ Sbjct: 320 KAYEHLGLE 328 >gi|22299796|ref|NP_683043.1| Holliday junction DNA helicase B [Thermosynechococcus elongatus BP-1] gi|32130027|sp|Q8DGR1|RUVB_THEEB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|22295980|dbj|BAC09805.1| Holliday junction DNA helicase [Thermosynechococcus elongatus BP-1] Length = 363 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 171/311 (54%), Positives = 220/311 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L+++ GQ E L + I+AAKAR E LDH+L GPPGLGKTT+A ++A E+GVN Sbjct: 38 LRPHSLQDYIGQQELKEVLHIAIQAAKARQEPLDHLLLYGPPGLGKTTIALILAAEMGVN 97 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P + + D+ LL NL+ D+LFIDEIHRLS + EE+LYPAMEDF LDL VG+ Sbjct: 98 CKVTSAPALERPRDIVGLLVNLQAGDILFIDEIHRLSRMTEELLYPAMEDFYLDLTVGKQ 157 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR ++ L+RFTL+ ATTR G LT+PL+DRFG+ RL FY E+L+ IVQRGA L Sbjct: 158 QTARPRRLKLNRFTLVGATTRAGALTSPLRDRFGLVQRLRFYHPEELQQIVQRGAALLQT 217 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA EI RSRGTPRIA RLL+RVRD+A V H IT ++A AAL L +D G D Sbjct: 218 PITPEAALEIGRRSRGTPRIALRLLKRVRDYAAVKHDGRITLDVARAALELLHVDPAGLD 277 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L ++ ++ GGPVGIET++A E IE++ EPY++Q G++QRTPRGR+ P Sbjct: 278 GSDRRLLRVMIESYQGGPVGIETLAAATGEDVQTIEEVYEPYLLQMGYLQRTPRGRVATP 337 Query: 322 IAWQHLGIDIP 332 AWQHLG P Sbjct: 338 RAWQHLGYTAP 348 >gi|332202173|gb|EGJ16242.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae GA41317] Length = 323 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 169/313 (53%), Positives = 219/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 11 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 71 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 251 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 311 KAYEHLGYEYSEK 323 >gi|228475179|ref|ZP_04059905.1| holliday junction DNA helicase RuvB [Staphylococcus hominis SK119] gi|228270790|gb|EEK12192.1| holliday junction DNA helicase RuvB [Staphylococcus hominis SK119] Length = 331 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 166/328 (50%), Positives = 230/328 (70%), Gaps = 3/328 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++ +++ E++ LRP L+++ GQ +NL++FI+AAK R E LDHVL Sbjct: 1 MDDR--MVDQSLHNEESSFEFSLRPTKLKQYIGQSSIKNNLEIFIKAAKLRDEPLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS Sbjct: 59 FGPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSS 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LY AMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +R Sbjct: 119 VVEEVLYSAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y DLK I+ R A++ G + DE+A E+A RSRGTPR+A RLL+RVRDF +V + Sbjct: 179 LEYYSESDLKEIIIRTAEVLGTKIDDESAVELAKRSRGTPRVANRLLKRVRDFQQVNEDE 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I E AL L +D G D +D + + I + GGPVG++TI+ + E R IED+ Sbjct: 239 QIYIETTKQALNLLQVDDEGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERITIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EP++IQ+GFI+RTPRGR P A++H Sbjct: 299 YEPFLIQKGFIERTPRGRKATPFAYEHF 326 >gi|148996682|ref|ZP_01824400.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP11-BS70] gi|168576313|ref|ZP_02722196.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae MLV-016] gi|194397680|ref|YP_002036959.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae G54] gi|307066936|ref|YP_003875902.1| Holliday junction resolvasome helicase subunit [Streptococcus pneumoniae AP200] gi|226698785|sp|B5E6T3|RUVB_STRP4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|147757257|gb|EDK64296.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP11-BS70] gi|183577783|gb|EDT98311.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae MLV-016] gi|194357347|gb|ACF55795.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae G54] gi|306408473|gb|ADM83900.1| Holliday junction resolvasome, helicase subunit [Streptococcus pneumoniae AP200] Length = 332 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 169/313 (53%), Positives = 218/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 320 KAYEHLGYEYSEK 332 >gi|325479576|gb|EGC82672.1| Holliday junction DNA helicase RuvB [Anaerococcus prevotii ACS-065-V-Col13] Length = 335 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 165/310 (53%), Positives = 225/310 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+++ GQ + L +FI+++ +R E LDHVL GPPGLGKTTL+ ++A ELGVN Sbjct: 24 IRPKWLKDYIGQDKVKEKLDIFIKSSLSRNEPLDHVLLQGPPGLGKTTLSTIIANELGVN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I + DLA++LTNL DVLFIDEIHR++ VEEILY AMEDF LD++VG+G Sbjct: 84 LRVTSGPAIERPSDLASILTNLSSGDVLFIDEIHRINRSVEEILYSAMEDFVLDIIVGKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+S++I+L +FTLI ATTR G+L+ PL+DRFG+ + LN Y+ +DL TIV+R A++ + Sbjct: 144 PNAQSIRIDLEKFTLIGATTRAGMLSAPLRDRFGVLLALNLYDTKDLTTIVKRSAQILDI 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A EIA RSRGTPRIA RLL+RVRDFA V + I + + L L ID MG D Sbjct: 204 PIDEKGAIEIARRSRGTPRIANRLLKRVRDFAIVKADEKIDYDTSKKGLELLEIDPMGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + + NFGGGPVG++TI+A IED+ EPY++Q GFI RTPRGR+L Sbjct: 264 TMDKKIILTMYDNFGGGPVGVDTIAASTGIENVTIEDVYEPYLLQIGFISRTPRGRVLTR 323 Query: 322 IAWQHLGIDI 331 A++H G+ I Sbjct: 324 KAYEHYGLKI 333 >gi|328957016|ref|YP_004374402.1| Holliday junction ATP-dependent DNA helicase RuvB [Carnobacterium sp. 17-4] gi|328673340|gb|AEB29386.1| Holliday junction ATP-dependent DNA helicase RuvB [Carnobacterium sp. 17-4] Length = 337 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 169/319 (52%), Positives = 222/319 (69%), Gaps = 3/319 (0%) Query: 13 SQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 S +ISL LRP L E+ GQ + L ++IEAAK R EALDHVL GPPGLGKTT Sbjct: 12 SSTTEEISLEKSLRPHYLAEYIGQEKVKRELSIYIEAAKNREEALDHVLLYGPPGLGKTT 71 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 +A V++ E+GV R+TSGP I KAGDL ALL LE DVLFIDEIHR+ +VEE+LY AM Sbjct: 72 MAMVISNEMGVAIRTTSGPAIEKAGDLVALLNELEAGDVLFIDEIHRMPRLVEEMLYSAM 131 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+ +D++VG+GP+A V L FTL+ ATTR GLL+ PL+DRFGI + +Y +E+L Sbjct: 132 EDYFVDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRDRFGIVSHMEYYTVEELS 191 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IV R A + + + A EIA RSRGTPR+A RLL+RVRD+A+V I ++IAD A Sbjct: 192 DIVLRSADIFNTEIIESGAIEIARRSRGTPRVANRLLKRVRDYAQVESNGVIKKQIADEA 251 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L L ID+ G D +D + L + N+ GGPVG+ TI+A + E + IED++EPY++Q GF Sbjct: 252 LAMLRIDQEGLDFVDQKLLKTMIENYHGGPVGLSTIAANIGEEIETIEDMVEPYLLQAGF 311 Query: 310 IQRTPRGRLLMPIAWQHLG 328 +QRTPRGR++ + + HLG Sbjct: 312 LQRTPRGRIVTHMGYTHLG 330 >gi|238926807|ref|ZP_04658567.1| crossover junction endoribonuclease subunit B [Selenomonas flueggei ATCC 43531] gi|238885339|gb|EEQ48977.1| crossover junction endoribonuclease subunit B [Selenomonas flueggei ATCC 43531] Length = 345 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 170/332 (51%), Positives = 231/332 (69%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M + E ++S D LRPR L E+ GQ SNL FI+AA +R EALDHVL Sbjct: 4 MGEDEEIISYEEQSTDGWQYSLRPRRLSEYIGQDRVKSNLSKFIQAALSRGEALDHVLLY 63 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL++ DVLFIDEIHRLS Sbjct: 64 GPPGLGKTTLAAIIANEMGANFRQTSAPAIERQGDLASLLTNLQEHDVLFIDEIHRLSHH 123 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILY AMED +D+++G+GPSARS++++L+ FTL+ ATT+ G L+ PL+DRFGI RL Sbjct: 124 VEEILYSAMEDHAIDIIIGKGPSARSIRLDLAPFTLVGATTKTGSLSAPLRDRFGIQARL 183 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y + L I++R A++ + + + A EIA RSRGTPR+A R+L+RVRD A+VA + Sbjct: 184 EYYTTDALLLIIERTAEILSVHIERDGALEIARRSRGTPRVANRILKRVRDIAQVAGEEI 243 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I+R + AL L +D+ G + D L ++ + F GGPVG++T++A LSE + IED+ Sbjct: 244 ISRSVTIDALDTLEVDECGLESKDRYMLEVMIQKFSGGPVGLKTLAAALSEMTETIEDVY 303 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQ GFI RT RGR++ ++H+G P Sbjct: 304 EPYLIQLGFIARTARGRVVTQGGYEHIGAPYP 335 >gi|15902282|ref|NP_357832.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae R6] gi|116515806|ref|YP_815759.1| Holliday junction DNA helicase B [Streptococcus pneumoniae D39] gi|148987999|ref|ZP_01819462.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP6-BS73] gi|149001627|ref|ZP_01826600.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP14-BS69] gi|149006013|ref|ZP_01829742.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP18-BS74] gi|149017952|ref|ZP_01834411.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP23-BS72] gi|168484641|ref|ZP_02709593.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae CDC1873-00] gi|168492214|ref|ZP_02716357.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae CDC0288-04] gi|169834021|ref|YP_001693787.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae Hungary19A-6] gi|225856017|ref|YP_002737528.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae P1031] gi|225858109|ref|YP_002739619.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae 70585] gi|225860297|ref|YP_002741806.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae Taiwan19F-14] gi|237649671|ref|ZP_04523923.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae CCRI 1974] gi|237821371|ref|ZP_04597216.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae CCRI 1974M2] gi|298229421|ref|ZP_06963102.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae str. Canada MDR_19F] gi|298256040|ref|ZP_06979626.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502076|ref|YP_003724016.1| Holliday junction DNA helicase B [Streptococcus pneumoniae TCH8431/19A] gi|32171626|sp|Q8CWU7|RUVB_STRR6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|122279355|sp|Q04MI9|RUVB_STRP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238688308|sp|B1I8Y6|RUVB_STRPI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767442|sp|C1CB34|RUVB_STRP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767445|sp|C1CIE0|RUVB_STRZP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767446|sp|C1CPD4|RUVB_STRZT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|15457786|gb|AAK99042.1| Branch migration of Holliday structures [Streptococcus pneumoniae R6] gi|116076382|gb|ABJ54102.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae D39] gi|147760085|gb|EDK67074.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP14-BS69] gi|147762369|gb|EDK69330.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP18-BS74] gi|147926463|gb|EDK77536.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP6-BS73] gi|147931516|gb|EDK82494.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP23-BS72] gi|168996523|gb|ACA37135.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae Hungary19A-6] gi|172042151|gb|EDT50197.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae CDC1873-00] gi|183573573|gb|EDT94101.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae CDC0288-04] gi|225721600|gb|ACO17454.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae 70585] gi|225726046|gb|ACO21898.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae P1031] gi|225726645|gb|ACO22496.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae Taiwan19F-14] gi|298237671|gb|ADI68802.1| Holliday junction DNA helicase B [Streptococcus pneumoniae TCH8431/19A] Length = 332 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 169/313 (53%), Positives = 218/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 320 KAYEHLGYEYSEK 332 >gi|253583196|ref|ZP_04860394.1| holliday junction DNA helicase ruvB [Fusobacterium varium ATCC 27725] gi|251833768|gb|EES62331.1| holliday junction DNA helicase ruvB [Fusobacterium varium ATCC 27725] Length = 340 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 165/319 (51%), Positives = 228/319 (71%), Gaps = 3/319 (0%) Query: 12 VSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+ + DI + LRPR +++ GQV + + IEAAK R ++DH+L GPPGLGKT Sbjct: 7 TSEMENDIEIQKTLRPRCFKDYIGQVSLKEKMSISIEAAKKRGGSIDHILLYGPPGLGKT 66 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA V+A E+G N + TSGPV+ +AGDLAA+LT+LE+ D+LFIDEIHRL+ VEEILYPA Sbjct: 67 TLAGVIATEMGANLKITSGPVLERAGDLAAILTSLEENDILFIDEIHRLNNTVEEILYPA 126 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED +LD+++G+GPSARS++I L FTLI ATTR GLL++PL+DRFG+ R+ +Y E++ Sbjct: 127 MEDKELDIIIGKGPSARSIRIELPSFTLIGATTRAGLLSSPLRDRFGVTHRMEYYSEEEI 186 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 I+ RG + G+ + + A E+A RSRGTPRIA RLL+RVRDF E+ I REI+ Sbjct: 187 TDIILRGGNILGVKIEIDGAKELASRSRGTPRIANRLLKRVRDFCEIRGNGVIDREISLK 246 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L ID G D LD + I N+GGGPVGI+T+S L E + +E++ EPY+++ G Sbjct: 247 ALEILGIDSAGLDDLDRDIVNAIIDNYGGGPVGIDTLSLMLGEDKRTLEEVYEPYLVKIG 306 Query: 309 FIQRTPRGRLLMPIAWQHL 327 +++RT RGR++ A++H Sbjct: 307 YLKRTNRGRMVTEKAYEHF 325 >gi|313887103|ref|ZP_07820799.1| Holliday junction DNA helicase RuvB [Porphyromonas asaccharolytica PR426713P-I] gi|332300438|ref|YP_004442359.1| Holliday junction ATP-dependent DNA helicase ruvB [Porphyromonas asaccharolytica DSM 20707] gi|312923332|gb|EFR34145.1| Holliday junction DNA helicase RuvB [Porphyromonas asaccharolytica PR426713P-I] gi|332177501|gb|AEE13191.1| Holliday junction ATP-dependent DNA helicase ruvB [Porphyromonas asaccharolytica DSM 20707] Length = 348 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 173/307 (56%), Positives = 217/307 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + F GQ NLKVF+EAA+ R EALDHVL GPPGLGKTTL+ +++ ELGV Sbjct: 27 LRPSYFDSFRGQGHVVDNLKVFVEAARRRDEALDHVLLYGPPGLGKTTLSHIISHELGVG 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ KAGDLA LLT+LE RDVLFIDEIHRLS VEE LY AMEDF++DLM+ +G Sbjct: 87 MKITSGPVLEKAGDLAGLLTSLEPRDVLFIDEIHRLSHTVEEYLYSAMEDFRIDLMIDKG 146 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARS++I+L+ FTL+ ATTR GLLT PL+DRFGI + L +Y+++ L IV R A++ + Sbjct: 147 PGARSIQIDLNPFTLVGATTRSGLLTAPLRDRFGINLHLEYYDVDTLTDIVLRSARILEV 206 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +EAA IA+RSRGTPRIA LL+RVRDFA+V I +I AL L IDK G D Sbjct: 207 PCEEEAARGIALRSRGTPRIANALLKRVRDFAQVKGNGVIDSDITTVALEALHIDKHGLD 266 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D + L I F GGPVG+ TI+ + E IE++ EP++IQ+GFIQRT GR Sbjct: 267 HTDHKLLKTIIDKFDGGPVGLTTIATAMGEDPGTIEEVYEPFLIQEGFIQRTRTGRQATR 326 Query: 322 IAWQHLG 328 +A+ HLG Sbjct: 327 LAYAHLG 333 >gi|325281458|ref|YP_004254000.1| Holliday junction ATP-dependent DNA helicase ruvB [Odoribacter splanchnicus DSM 20712] gi|324313267|gb|ADY33820.1| Holliday junction ATP-dependent DNA helicase ruvB [Odoribacter splanchnicus DSM 20712] Length = 342 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 168/307 (54%), Positives = 221/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +F GQ + NL++F+ AAK R E+LDHV+ GPPGLGKTTL+ ++A ELGV Sbjct: 22 LRPLNFGDFQGQKKIVENLEIFVRAAKMRGESLDHVILHGPPGLGKTTLSAIIANELGVG 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ K GDLA LLTNLE+ DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 82 IKITSGPVLDKPGDLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+I ++ FTLI ATTR GLLT PL+ RFGI L +Y+ + L I+ R A + + Sbjct: 142 PAARSVQIQINPFTLIGATTRSGLLTAPLRARFGINCHLEYYDTDILSGIISRSAAILNV 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T +AA EIA RSRGTPRIA LLRRVRDFA V +I R+I AL L IDK G D Sbjct: 202 GITGQAAMEIASRSRGTPRIANALLRRVRDFAMVKGNGSIDRDITRYALEALNIDKYGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I++GFI+RTPRGR + Sbjct: 262 EMDNKILLTIIEKFKGGPVGLTTIATAVGEDAGTLEEVYEPFLIKEGFIKRTPRGREVTD 321 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 322 LAYKHLG 328 >gi|305431583|ref|ZP_07400757.1| crossover junction ATP-dependent DNA helicase RuvB [Campylobacter coli JV20] gi|304445390|gb|EFM38029.1| crossover junction ATP-dependent DNA helicase RuvB [Campylobacter coli JV20] Length = 336 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 162/309 (52%), Positives = 227/309 (73%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + + GQ NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E+G N Sbjct: 20 LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS +EE+LYPAMED++LD+++G G Sbjct: 80 IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+ RL FY+ E+L I+Q+ A Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDEELAIILQKAALKLNK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +EAA EIA RSR TPRIA RLL+RVRDFA+V +TIT+E A AL L ++++GFD Sbjct: 200 SCENEAALEIAKRSRSTPRIALRLLKRVRDFADVNDEETITKERAKEALNSLGVNELGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +DLRYL ++ P+G+ +I+A LSE + IED+IEPY++ G+I+RT +GR+ Sbjct: 260 AMDLRYLELLTEA-KRKPIGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIAST 318 Query: 322 IAWQHLGID 330 ++ L ++ Sbjct: 319 KSFSVLKLN 327 >gi|88602183|ref|YP_502361.1| Holliday junction DNA helicase RuvB [Methanospirillum hungatei JF-1] gi|97190136|sp|Q2FPZ8|RUVB_METHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|88187645|gb|ABD40642.1| Holliday junction DNA helicase subunit RuvB [Methanospirillum hungatei JF-1] Length = 337 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 170/314 (54%), Positives = 226/314 (71%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E+ D +RP L +F GQ L V I +A+ R + LDH+LF GPPGLGKTTLA ++ Sbjct: 13 EEQDEPSVRPGLLADFIGQDSIKDALTVAITSARKRNKPLDHILFSGPPGLGKTTLAHII 72 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A+E+ + +TSGPV+ + GDLAALLT L+DRD LFIDEIHRLS ++EEILYPAMED+ + Sbjct: 73 AQEMNSHIETTSGPVLDRPGDLAALLTPLKDRDFLFIDEIHRLSPVIEEILYPAMEDYTI 132 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 DL++GEGPSAR++++ L RFTLI ATTR+GLL +P +DRFGI +RL+ Y+ +L IV R Sbjct: 133 DLLIGEGPSARTIQLPLERFTLIGATTRLGLLGSPFRDRFGIILRLDLYDPSELTVIVTR 192 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ +T E A EIA RSRGTPRIA RLL+R D+A V +I + IA+ AL L Sbjct: 193 SAGILGIPITPEGAAEIAGRSRGTPRIANRLLKRAYDYAIVRGTGSIDQNIANTALFALG 252 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D+ G D LD R L +IA +F GGPVG++TIS + E IED+ EPY+I+ GF++RTP Sbjct: 253 VDQKGLDILDRRILEVIANDFDGGPVGLKTISISVGEEPRTIEDVYEPYLIRIGFLKRTP 312 Query: 315 RGRLLMPIAWQHLG 328 +GR++ A HLG Sbjct: 313 QGRMITSAARDHLG 326 >gi|293400499|ref|ZP_06644644.1| holliday junction DNA helicase RuvB [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305525|gb|EFE46769.1| holliday junction DNA helicase RuvB [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 335 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 169/323 (52%), Positives = 232/323 (71%), Gaps = 5/323 (1%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 + V +ED LRP TL+E+ GQ + NL VFI+AAK R EALDHVL GPPGLGKTT Sbjct: 10 QGVEEEDT----LRPSTLKEYIGQAQLKENLAVFIQAAKQRNEALDHVLLYGPPGLGKTT 65 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 L+ ++A E+G + ++TSGP I K+GDLAA+L+ LE DVLFIDEIHRL VEE+LYPAM Sbjct: 66 LSYILANEMGGHIKTTSGPSIEKSGDLAAILSTLEAGDVLFIDEIHRLPKQVEEVLYPAM 125 Query: 130 EDFQLDLMVGEGPSA-RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 ED+ +D++VG+ S RS++++L FTL+ ATTR G LT PL+DRFGI +L FY +++L Sbjct: 126 EDYCIDIVVGKDSSTTRSIRLDLPPFTLVGATTRAGDLTAPLRDRFGIVSQLEFYSLDEL 185 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + I+ R +++ + +EA EIA+RSRGTPRIA RL RRVRDFA+V + I + +A Sbjct: 186 QQIIWRTSRVMDTEIEEEAVLEIALRSRGTPRIANRLFRRVRDFAQVMNDGIIDKAVAAM 245 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL +L +D +G D +D +YL I F GGPVG+E +++ + E +ED+ EPY++Q G Sbjct: 246 ALDKLKVDHLGLDNVDHKYLKGIIERFKGGPVGLEALASSIGEEAMTLEDVYEPYLLQIG 305 Query: 309 FIQRTPRGRLLMPIAWQHLGIDI 331 FI RTPRGR++ A++HLG D+ Sbjct: 306 FINRTPRGRIVTDKAYRHLGYDM 328 >gi|34763187|ref|ZP_00144153.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887156|gb|EAA24261.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 338 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 159/306 (51%), Positives = 222/306 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++ +E+ GQ + + I+AA+ R +DH+L GPPGLGKTTLA V+A E+ N Sbjct: 20 LRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPPGLGKTTLAGVIANEMKAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+ VEEILYPAMED +LD+++G+G Sbjct: 80 LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEEILYPAMEDGELDIIIGKG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSA+S++I L FTLI ATTR GLL+ PL+DRFG+ ++ +Y ++K+I+ RGAK+ G+ Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNENEIKSIIIRGAKILGV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+ TI + A AL L +D G D Sbjct: 200 KINEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDKLSAKNALDMLGVDSNGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD + I N+ GGPVGIET+S L E R +E++ EPY+++ GF++RT RGR++ P Sbjct: 260 DLDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRIVTP 319 Query: 322 IAWQHL 327 A+QH Sbjct: 320 KAYQHF 325 >gi|322515865|ref|ZP_08068807.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus vestibularis ATCC 49124] gi|322125652|gb|EFX96979.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus vestibularis ATCC 49124] Length = 333 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 163/309 (52%), Positives = 223/309 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ +E+ GQ + LK+FIEAAK R EALDH L GPPGLGKTT+A V+A E+GVN Sbjct: 20 LRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE D+LFIDEIHR+ + VEE+LY AMED+ +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTL+ ATTR G+L+NPL+ RFGI + +YE+ DL IV+R +++ + Sbjct: 140 ETSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRD+A++ I +IAD AL L +D G D Sbjct: 200 TITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIIDDKIADKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + +GGGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEIYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATV 319 Query: 322 IAWQHLGID 330 A++H+G D Sbjct: 320 KAYEHMGYD 328 >gi|228470154|ref|ZP_04055063.1| holliday junction DNA helicase RuvB [Porphyromonas uenonis 60-3] gi|228308292|gb|EEK17147.1| holliday junction DNA helicase RuvB [Porphyromonas uenonis 60-3] Length = 348 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 173/307 (56%), Positives = 216/307 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + F GQ NLKVF+EAA+ R EALDHVL GPPGLGKTTL+ +++ ELGV Sbjct: 27 LRPSYFDSFRGQGHVVDNLKVFVEAARRRDEALDHVLLYGPPGLGKTTLSHIISHELGVG 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ KAGDLA LLT+LE RDVLFIDEIHRLS VEE LY AMEDF++DLM+ +G Sbjct: 87 MKITSGPVLEKAGDLAGLLTSLEPRDVLFIDEIHRLSHTVEEYLYSAMEDFRIDLMIDKG 146 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARS++I+L+ FTL+ ATTR GLLT PL+DRFGI + L +Y+++ L IV R A++ + Sbjct: 147 PGARSIQIDLNPFTLVGATTRSGLLTAPLRDRFGINLHLEYYDVDTLTDIVLRSARILEV 206 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +EAA IA+RSRGTPRIA LL+RVRDFA+V I I AL L IDK G D Sbjct: 207 PCEEEAARGIALRSRGTPRIANALLKRVRDFAQVKGNGVIDSNITTVALEALHIDKHGLD 266 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D + L I F GGPVG+ TI+ + E IE++ EP++IQ+GFIQRT GR Sbjct: 267 HTDHKLLKTIIDKFDGGPVGLSTIATAMGEDPGTIEEVYEPFLIQEGFIQRTRTGRQATR 326 Query: 322 IAWQHLG 328 +A+ HLG Sbjct: 327 LAYAHLG 333 >gi|169333982|ref|ZP_02861175.1| hypothetical protein ANASTE_00374 [Anaerofustis stercorihominis DSM 17244] gi|169258699|gb|EDS72665.1| hypothetical protein ANASTE_00374 [Anaerofustis stercorihominis DSM 17244] Length = 347 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 165/308 (53%), Positives = 223/308 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP TL E+ GQ ++VFI AAK R EALDHVL GPPGLGKTTL+ ++A ELGV+ Sbjct: 21 LRPSTLGEYIGQETVKERMRVFISAAKQRGEALDHVLLYGPPGLGKTTLSNIIANELGVS 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K GDLAA+L+ L+ DVLFIDEIHRL+ +EE+LYPAMED+ D+++G+G Sbjct: 81 IKVTSGPAIEKPGDLAAILSGLKKNDVLFIDEIHRLNRTIEEVLYPAMEDYAFDIVMGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+SV+I ++ FTLI ATTR GLL++PL+DRFG+ +L Y+IE+L I++R + + + Sbjct: 141 PNAKSVRIPIAPFTLIGATTRTGLLSSPLRDRFGVLNKLEMYKIEELMEIIKRSSGILDI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DE A EIA+RSR TPRIA R L+RVRD+A+V ++ I +IA AL L +D+ G D Sbjct: 201 DIDDEGAKEIAIRSRQTPRIANRFLKRVRDYAQVKNSDMINGKIAVEALKLLDVDENGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D+ L I F GGPVG+ T+SA + E D I D+ EPY++Q GFI RTPRGR+ Sbjct: 261 SSDIGILDAIINKFDGGPVGLNTLSAIIGEEEDTILDVYEPYLLQLGFINRTPRGRVATK 320 Query: 322 IAWQHLGI 329 +A+ +LG+ Sbjct: 321 LAYDYLGV 328 >gi|257899428|ref|ZP_05679081.1| holliday junction DNA helicase RuvB [Enterococcus faecium Com15] gi|293570774|ref|ZP_06681824.1| holliday junction DNA helicase RuvB [Enterococcus faecium E980] gi|257837340|gb|EEV62414.1| holliday junction DNA helicase RuvB [Enterococcus faecium Com15] gi|291609246|gb|EFF38518.1| holliday junction DNA helicase RuvB [Enterococcus faecium E980] Length = 333 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 169/330 (51%), Positives = 226/330 (68%), Gaps = 1/330 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M E LLS + + + LRP+ L ++ GQ + L+++IEAA+ R E LDHVL Sbjct: 1 MTDEYLLSPETGENELSLEKSLRPQLLSQYIGQRKVKQELQIYIEAARNREEPLDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTT+A V+A E+ VN R+TSGP I + GDL A+L LE DVLFIDEIHRL + Sbjct: 61 GPPGLGKTTMAMVIANEMTVNIRTTSGPAIERPGDLVAILNELEAGDVLFIDEIHRLPRV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LY AMEDF +D+MVG+GP+A V L FTLI ATTR G+L+ PL+DRFGI + Sbjct: 121 VEEMLYSAMEDFYVDIMVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIISHM 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y+ ++L+ IV R + + + +E A EIA RSRGTPRIA RLL+RVRDFA+V Sbjct: 181 EYYDEQELQEIVLRSSDIFQTEIIEEGALEIARRSRGTPRIANRLLKRVRDFAQVQGDGK 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I R IAD AL L +D+ G D +D + L + +GGGPVG+ T+S + E R+ +ED+ Sbjct: 241 IDRPIADQALTLLQVDQAGLDYVDQKLLRTMIELYGGGPVGLSTLSVNIGEERETVEDMY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+IQ+GF++RTPRGR+ A++H G D Sbjct: 301 EPYLIQKGFLKRTPRGRMATAYAYEHFGYD 330 >gi|315023979|gb|EFT36981.1| Holliday junction DNA helicase RuvB [Riemerella anatipestifer RA-YM] Length = 340 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 166/308 (53%), Positives = 221/308 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++ ++F GQ NL+VF+ AAK R ALDH L GPPGLGKTTLA ++A ELGV Sbjct: 23 IRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K G LA LLTNLE+ DVLFIDEIHRLS +VEE LY AMED+++D+M+ G Sbjct: 83 FKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+INL+ FTL+ ATTR G+LT P+ RFGI RL +Y +E L I++R A++ G+ Sbjct: 143 PNARSVQINLNPFTLVGATTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA EIA RSRGTPRIA LLRRVRDFAE+ I +I AL L +D+ G D Sbjct: 203 PIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNGEIEIKITKFALDSLNVDEFGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + ++ NF G PVGI ++ + E + +E++ EP++IQ+GFI RTPRGR + Sbjct: 263 DMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREVTD 322 Query: 322 IAWQHLGI 329 A+QHL I Sbjct: 323 KAYQHLNI 330 >gi|160902803|ref|YP_001568384.1| Holliday junction DNA helicase B [Petrotoga mobilis SJ95] gi|160360447|gb|ABX32061.1| Holliday junction DNA helicase RuvB [Petrotoga mobilis SJ95] Length = 351 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 169/314 (53%), Positives = 222/314 (70%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED LRP L EF GQ LKV IEAAK R EA+DHV+ GPPGLGKTTLA V+ Sbjct: 20 EDTGSKKLRPNYLNEFIGQDNIKKKLKVAIEAAKIRKEAMDHVVLAGPPGLGKTTLAYVI 79 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 + ELG N + TSGPVI KAGDLAA+LTNLE+ DVLFIDEIHRL+ VEEILY AMEDFQL Sbjct: 80 SNELGANLQITSGPVIEKAGDLAAILTNLENGDVLFIDEIHRLNRTVEEILYSAMEDFQL 139 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+++G+GPSARS++I+L FTL+ ATTR+GL+ PL+ RFGI + ++FY +DL I++R Sbjct: 140 DIVIGKGPSARSIRIDLQPFTLVGATTRLGLIAPPLRSRFGIILEVDFYSPKDLNLIIKR 199 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + + + ++A+ +A RSRGTPRIA RLLRRVRDF +V+ I E D + L Sbjct: 200 SADILNIKIKEDASLILAQRSRGTPRIANRLLRRVRDFVQVSGKNIIEAEDVDNTMKLLE 259 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D+ G D++D + L I N+ GGPVGI +++ + D+I ++ EP+++Q GFI RTP Sbjct: 260 MDEDGLDKMDRKILKTIIENYEGGPVGINALASSIGIEPDSISEVYEPFLLQAGFIIRTP 319 Query: 315 RGRLLMPIAWQHLG 328 RGR+ A+Q L Sbjct: 320 RGRVATEKAYQKLN 333 >gi|195977191|ref|YP_002122435.1| Holliday junction DNA helicase RuvB [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|238689839|sp|B4U5F8|RUVB_STREM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|195973896|gb|ACG61422.1| Holliday junction DNA helicase RuvB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 333 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 167/307 (54%), Positives = 218/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ L +FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGV+ Sbjct: 20 LRPQYLREYIGQDRVKDQLMIFIEAAKRREESLDHVLLFGPPGLGKTTMAFVIANELGVH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMTVEEILYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y+ DL IV+R A + + Sbjct: 140 DTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQTADLTEIVERTADIFDM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPRIA RLL+RVRD+A++ IT +I D AL L +D+ G D Sbjct: 200 TIKHEAAYELARRSRGTPRIANRLLKRVRDYAQIMGDGMITTQITDKALTMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR++ Sbjct: 260 YVDQKILRTMIEVYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVVTE 319 Query: 322 IAWQHLG 328 A+QHLG Sbjct: 320 KAYQHLG 326 >gi|251781504|ref|YP_002995805.1| Holliday junction DNA helicase RuvB [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390132|dbj|BAH80591.1| Holliday junction DNA helicase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 338 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 167/313 (53%), Positives = 221/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L +FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 26 LRPQYLREYIGQDKVKEQLTIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 86 LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAG 145 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y+ DL IV+R A + + Sbjct: 146 DTSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFDM 205 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPRIA RLL+RVRD+A++ IT +I D AL L +D+ G D Sbjct: 206 EIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVITAQITDKALTMLDVDREGLD 265 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 266 YVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVATE 325 Query: 322 IAWQHLGIDIPHR 334 A++HLG P + Sbjct: 326 KAYRHLGYPCPSK 338 >gi|110636796|ref|YP_677003.1| Holliday junction DNA helicase RuvB [Cytophaga hutchinsonii ATCC 33406] gi|123354819|sp|Q11Y53|RUVB_CYTH3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|110279477|gb|ABG57663.1| Holliday junction DNA helicase [Cytophaga hutchinsonii ATCC 33406] Length = 342 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 168/306 (54%), Positives = 220/306 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + ++F GQ + NLK+F+ AAK R E LDHVL GPPGLGKTTL+ +++ EL N Sbjct: 24 LRPLSFDDFAGQDKILENLKIFVGAAKQRGEPLDHVLLHGPPGLGKTTLSNIISNELNSN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ K GDLA LLTNL+ DVLFIDEIHRL+ +VEE LY AMED+++D+M+ G Sbjct: 84 IKITSGPVLEKPGDLAGLLTNLQTNDVLFIDEIHRLNSVVEEYLYSAMEDYKIDIMLDSG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +ARS++I L+ FTLI ATTR GLLT+PL+ RFGI RL +Y+ + L IVQR + L Sbjct: 144 ANARSIQIGLNPFTLIGATTRAGLLTSPLRARFGINARLEYYDAKLLTRIVQRSSDLLNT 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + AA EIA RSRGTPRIA LLRR RDFA++ TIT EIA AL L +D G D Sbjct: 204 PILETAAFEIARRSRGTPRIANNLLRRTRDFAQIKGDGTITLEIARIALQALNVDHNGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R LT I F GGPVG+ TI+ +SE + IE++ EP++IQ+G+++RT RGR + P Sbjct: 264 DMDNRILTTIIDKFKGGPVGLSTIATAVSEEAETIEEVYEPFLIQEGYLKRTSRGREVTP 323 Query: 322 IAWQHL 327 +A++HL Sbjct: 324 LAYKHL 329 >gi|148994600|ref|ZP_01823742.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP9-BS68] gi|168489735|ref|ZP_02713934.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP195] gi|147927130|gb|EDK78168.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP9-BS68] gi|183571836|gb|EDT92364.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP195] Length = 332 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 169/313 (53%), Positives = 218/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 320 KAYEHLGYEYSEK 332 >gi|304436497|ref|ZP_07396471.1| crossover junction ATP-dependent DNA helicase RuvB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370543|gb|EFM24194.1| crossover junction ATP-dependent DNA helicase RuvB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 345 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 170/332 (51%), Positives = 231/332 (69%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M + E ++S D LRPR L E+ GQ SNL FI+AA +R EALDHVL Sbjct: 4 MGEDEEIISYEEQSTDGWQYSLRPRRLSEYIGQDRVKSNLSKFIQAALSRGEALDHVLLC 63 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL++ DVLFIDEIHRLS Sbjct: 64 GPPGLGKTTLAAIIANEMGANFRQTSAPAIERQGDLASLLTNLQEHDVLFIDEIHRLSHH 123 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILY AMED +D+++G+GPSARS++++L+ FTL+ ATT+ G L+ PL+DRFGI RL Sbjct: 124 VEEILYSAMEDHAIDIIIGKGPSARSIRLDLAPFTLVGATTKTGSLSAPLRDRFGIQARL 183 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y + L I++R A++ + + + A EIA RSRGTPR+A R+L+RVRD A+VA + Sbjct: 184 EYYTTDALLLIIERTAEILSVHIERDGALEIARRSRGTPRVANRILKRVRDIAQVAGEEI 243 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I+R + AL L +D+ G + D L ++ + F GGPVG++T++A LSE + IED+ Sbjct: 244 ISRSVTIDALDALEVDECGLENKDRYMLEVMIQKFSGGPVGLKTLAAALSEMTETIEDVY 303 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQ GFI RT RGR++ ++H+G P Sbjct: 304 EPYLIQLGFIARTARGRVVTQGGYEHIGAPYP 335 >gi|241895533|ref|ZP_04782829.1| Holliday junction DNA helicase B [Weissella paramesenteroides ATCC 33313] gi|241871111|gb|EER74862.1| Holliday junction DNA helicase B [Weissella paramesenteroides ATCC 33313] Length = 336 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 169/313 (53%), Positives = 219/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP TL+++ GQ + L V+IEAAK R+E LDH+L GPPGLGKTTLA VVA E+GV Sbjct: 22 LRPSTLQQYIGQEDLKQRLHVYIEAAKQRSEPLDHILLYGPPGLGKTTLAMVVAHEMGVG 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP I K+GDL ALL L DVLFIDEIHRL VEE+LY AMEDF +D++ GEG Sbjct: 82 LRTTSGPAIEKSGDLLALLNELAPGDVLFIDEIHRLPKQVEEMLYSAMEDFYVDIIAGEG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A + L FTL+ ATTR G+L+ PL+DRFGI + +Y +L I+QR A + + Sbjct: 142 PTAHPIHFPLPPFTLVGATTRAGMLSQPLRDRFGIVEHMAYYTPGELSKIIQRSADIFNI 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V DE A E+A RSRGTPRIA RLLRRVRDF V KTIT E+ + +L L ID MG D Sbjct: 202 EVADEGAYELARRSRGTPRIANRLLRRVRDFTTVKGLKTITDEMVNFSLALLQIDGMGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L + + + GGPVG+ TI+A + E D IE + EPY++Q GF+QRTPRGR++ Sbjct: 262 EVDHKILETMIKFYQGGPVGVGTIAANIGEEVDTIESVYEPYLLQIGFLQRTPRGRVVTL 321 Query: 322 IAWQHLGIDIPHR 334 A++HL + +P + Sbjct: 322 AAYEHLHLPLPDK 334 >gi|183603173|ref|ZP_02710483.2| holliday junction DNA helicase RuvB [Streptococcus pneumoniae CDC1087-00] gi|183603560|ref|ZP_02718099.2| holliday junction DNA helicase RuvB [Streptococcus pneumoniae CDC3059-06] gi|307126476|ref|YP_003878507.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae 670-6B] gi|183570868|gb|EDT91396.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae CDC1087-00] gi|183576055|gb|EDT96583.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae CDC3059-06] gi|301793527|emb|CBW35902.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae INV104] gi|301799403|emb|CBW31939.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae OXC141] gi|301801200|emb|CBW33874.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae INV200] gi|306483538|gb|ADM90407.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae 670-6B] gi|327390676|gb|EGE89016.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae GA04375] gi|332075924|gb|EGI86391.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae GA17570] gi|332076706|gb|EGI87168.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae GA17545] gi|332203425|gb|EGJ17492.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae GA47368] Length = 323 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 169/313 (53%), Positives = 218/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 11 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 71 LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALTMLDVDHEGLD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 251 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 311 KAYEHLGYEYSEK 323 >gi|184154992|ref|YP_001843332.1| Holliday junction DNA helicase RuvB [Lactobacillus fermentum IFO 3956] gi|227514530|ref|ZP_03944579.1| crossover junction endoribonuclease subunit B [Lactobacillus fermentum ATCC 14931] gi|183226336|dbj|BAG26852.1| holliday junction DNA helicase RuvB [Lactobacillus fermentum IFO 3956] gi|227087087|gb|EEI22399.1| crossover junction endoribonuclease subunit B [Lactobacillus fermentum ATCC 14931] Length = 339 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 173/329 (52%), Positives = 226/329 (68%), Gaps = 2/329 (0%) Query: 3 DREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 D + +LS V+ QE D LRP+TL + GQ L V+I+AAK+R EALDHVL Sbjct: 4 DFDDVLSNEVTDDQEGRDEVSLRPQTLATYIGQARIKHELAVYIQAAKSRGEALDHVLLY 63 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+ V ++TSGP I K GDL ALL +L+ DVLFIDEIHRL + Sbjct: 64 GPPGLGKTTLAMVIANEMQVAIKTTSGPAIEKPGDLVALLNDLKPGDVLFIDEIHRLPKV 123 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LY AMEDF +D++VGEGP+A V L FTLI ATTR GLL PL+DRFGI R+ Sbjct: 124 VEEMLYSAMEDFYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGLLAAPLRDRFGIVARM 183 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 ++Y +L I+ R A + + ++ A E+A+RSRGTPRIA RLL+RVRDFA+V Sbjct: 184 DYYTTTELSQIIDRSATIFNTKIQEDGAHELALRSRGTPRIANRLLKRVRDFAQVGGQAA 243 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I D AL LA+D G D++D + LT + ++ GGPVGI TI+A + E + IE++ Sbjct: 244 IDPATVDRALDLLAVDDQGLDEIDRKLLTTMIEHYHGGPVGIRTIAANIGEEVNTIEEMY 303 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+ RTPRGR++ P A++HL I Sbjct: 304 EPYLLQIGFLMRTPRGRVVTPAAYEHLKI 332 >gi|15805623|ref|NP_294319.1| Holliday junction DNA helicase RuvB [Deinococcus radiodurans R1] gi|7388247|sp|Q9X719|RUVB_DEIRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|6458295|gb|AAF10176.1|AE001918_1 Holliday junction DNA helicase [Deinococcus radiodurans R1] Length = 333 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 171/309 (55%), Positives = 223/309 (72%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL E+ GQ + L V+++AA+ R EALDH L GPPGLGKTTLA ++A ELGVN Sbjct: 11 LRPKTLTEYVGQEKLKDKLGVYLQAARGRREALDHTLLFGPPGLGKTTLAHIIAYELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL + EE LYPAMEDF+LD+++G+ Sbjct: 71 IRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKLDIVLGQ 130 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR++++ L RFTL+ ATTR GL+T P++ RFGI L +Y E++ T + R A+L G Sbjct: 131 GPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTAEEIATNLLRDARLLG 190 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + +EA EI RSRGT RIA RLLRRVRD+A+VA TI E A +AL +L +D G Sbjct: 191 FGLDEEAGLEIGARSRGTMRIAKRLLRRVRDYADVAGETTIGLERAQSALDKLGLDSAGL 250 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D D +YL + F GGPVG++T++ +SE +ED+ EPY+IQ GFI+RTPRGR+ Sbjct: 251 DDRDKKYLETLIHRFAGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRTPRGRVAT 310 Query: 321 PIAWQHLGI 329 A+ HLG+ Sbjct: 311 AHAYDHLGL 319 >gi|314936246|ref|ZP_07843593.1| holliday junction DNA helicase RuvB [Staphylococcus hominis subsp. hominis C80] gi|313654865|gb|EFS18610.1| holliday junction DNA helicase RuvB [Staphylococcus hominis subsp. hominis C80] Length = 331 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 165/328 (50%), Positives = 230/328 (70%), Gaps = 3/328 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++ +++ E++ LRP L+++ GQ +NL++FI+AAK R E LDHVL Sbjct: 1 MDDR--MVDQSLHNEESSFEFSLRPTKLKQYIGQSSIKNNLEIFIKAAKLRDEPLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS Sbjct: 59 FGPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSS 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LY AMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +R Sbjct: 119 VVEEVLYSAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y DLK I+ R A++ G + DE+A E+A RSRGTPR+A RLL+RVRDF +V + Sbjct: 179 LEYYSESDLKEIIIRTAEVLGTKIDDESAVELAKRSRGTPRVANRLLKRVRDFQQVNEDE 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I E AL L +D G D +D + + I + GGPVG++T++ + E R IED+ Sbjct: 239 QIYIETTKQALNLLQVDDEGLDYIDHKMMNCIINQYNGGPVGLDTLAVSIGEERITIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EP++IQ+GFI+RTPRGR P A++H Sbjct: 299 YEPFLIQKGFIERTPRGRKATPFAYEHF 326 >gi|237744244|ref|ZP_04574725.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 7_1] gi|256027908|ref|ZP_05441742.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. D11] gi|260494172|ref|ZP_05814303.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_33] gi|289765857|ref|ZP_06525235.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D11] gi|229431473|gb|EEO41685.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 7_1] gi|260198318|gb|EEW95834.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_33] gi|289717412|gb|EFD81424.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D11] Length = 332 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 159/306 (51%), Positives = 223/306 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++ +E+ GQ + + I+AA+ R +DH+L GPPGLGKTTLA V+A E+ N Sbjct: 20 LRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPPGLGKTTLAGVIANEMKAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+ VEEILYPAMED +LD+++G+G Sbjct: 80 LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEEILYPAMEDGELDIIIGKG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSA+S++I L FTLI ATTR GLL+ PL+DRFG+ ++ +Y ++K+I+ RGAK+ G+ Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNENEIKSIIIRGAKILGV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+ TI + A +AL L +D G D Sbjct: 200 KIDEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDKLSAKSALDMLGVDSNGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD + I N+ GGPVGIET+S L E R +E++ EPY+++ GF++RT RGR++ P Sbjct: 260 DLDRNIVNSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRVVTP 319 Query: 322 IAWQHL 327 A+QH Sbjct: 320 KAYQHF 325 >gi|255531791|ref|YP_003092163.1| Holliday junction DNA helicase RuvB [Pedobacter heparinus DSM 2366] gi|255344775|gb|ACU04101.1| Holliday junction DNA helicase RuvB [Pedobacter heparinus DSM 2366] Length = 340 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 173/325 (53%), Positives = 231/325 (71%), Gaps = 1/325 (0%) Query: 9 SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 S ++S + DI +LRP+ ++FTGQ + NLK+F++AAK R E LDHVL GPPGLGK Sbjct: 9 SESLSPVERDIEKVLRPQAFDDFTGQEKVMENLKIFVKAAKLRGEPLDHVLLHGPPGLGK 68 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTL+ ++A E+GV + TSGPV+ K GDLA LLT L++ D+LFIDEIHRLS +VEE LY Sbjct: 69 TTLSLIIANEMGVGIKVTSGPVLDKPGDLAGLLTGLDEGDILFIDEIHRLSPLVEEYLYS 128 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMEDF++D+M+ GP+ARSV+I+L+ FTL+ ATTR GLLT PL+ RFGI RL +Y+ + Sbjct: 129 AMEDFKIDIMLESGPNARSVQISLNPFTLVGATTRSGLLTAPLRARFGINSRLAYYDAKL 188 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV R +++ +TDE A EIA RSRGTPRIA LLRR RDFA++ I EIA Sbjct: 189 LTTIVLRSSEILKTPITDEGAYEIARRSRGTPRIANALLRRTRDFAQIKGTGEIDTEIAR 248 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D+ G D++D + LT I F GGPVG++TI+ + E IE++ EP++IQ+ Sbjct: 249 YALKALNVDEHGLDEMDNKILTTIIDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQE 308 Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332 GF+ RT RGR A++HL + P Sbjct: 309 GFLMRTSRGREATEAAYKHLQRNFP 333 >gi|257467707|ref|ZP_05631803.1| Holliday junction DNA helicase RuvB [Fusobacterium ulcerans ATCC 49185] gi|317062000|ref|ZP_07926485.1| holliday junction DNA helicase B [Fusobacterium ulcerans ATCC 49185] gi|313687676|gb|EFS24511.1| holliday junction DNA helicase B [Fusobacterium ulcerans ATCC 49185] Length = 340 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 165/319 (51%), Positives = 228/319 (71%), Gaps = 3/319 (0%) Query: 12 VSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+ + DI + LRPR +E+ GQV + + IEAAK R ++DH+L GPPGLGKT Sbjct: 7 TSEMENDIEIQRTLRPRCFKEYIGQVSLKEKMSISIEAAKKRGGSIDHILLYGPPGLGKT 66 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA V+A E+G N + TSGPV+ +AGDLAA+LT+LE+ D+LFIDEIHRL+ VEEILYPA Sbjct: 67 TLAGVIATEMGANLKITSGPVLERAGDLAAILTSLEENDILFIDEIHRLNNTVEEILYPA 126 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED +LD+++G+GPSARS++I L FTLI ATTR GLL++PL+DRFG+ R+ +Y E++ Sbjct: 127 MEDKELDIIIGKGPSARSIRIELPSFTLIGATTRAGLLSSPLRDRFGVTHRMEYYSEEEI 186 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 I+ RG + G+ + + A E+A RSRGTPRIA RLL+RVRDF E+ I R+I+ Sbjct: 187 TDIILRGGNILGVKIELDGAKELASRSRGTPRIANRLLKRVRDFCEIRGNGIIDRDISLK 246 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L ID G D LD + I N+GGGPVGI+T+S L E + +E++ EPY+++ G Sbjct: 247 ALDILGIDSAGLDDLDRDIVNAIIDNYGGGPVGIDTLSLMLGEDKRTLEEVYEPYLVKIG 306 Query: 309 FIQRTPRGRLLMPIAWQHL 327 +++RT RGR++ A++H Sbjct: 307 YLKRTNRGRMVTEKAYEHF 325 >gi|163790794|ref|ZP_02185220.1| Holliday junction DNA helicase RuvB [Carnobacterium sp. AT7] gi|159873974|gb|EDP68052.1| Holliday junction DNA helicase RuvB [Carnobacterium sp. AT7] Length = 337 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 171/335 (51%), Positives = 227/335 (67%), Gaps = 3/335 (0%) Query: 2 MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 MD E + S +ISL LRP + E+ GQ + L ++IEAAK R EALDHVL Sbjct: 1 MDPEERIISGDSSTTEEISLEKSLRPHYMAEYIGQEKVKRELAIYIEAAKNREEALDHVL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTT+A V++ E+ V R+TSGP I KAGDL ALL LE DVLFIDEIHR+ Sbjct: 61 LYGPPGLGKTTMAMVISNEMNVAIRTTSGPAIEKAGDLVALLNELEAGDVLFIDEIHRMP 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEE+LY AMED+ +D++VG+GP+A V L FTL+ ATTR GLL+ PL+DRFGI Sbjct: 121 RLVEEMLYSAMEDYFVDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRDRFGIVS 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 + +Y +E+L IV R A + + + A EIA RSRGTPR+A RLL+RVRD+A+V Sbjct: 181 HMEYYTVEELSDIVLRSADIFNTEIIESGAIEIARRSRGTPRVANRLLKRVRDYAQVQSN 240 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 I +EIAD AL L ID+ G D +D + L + N+ GGPVG+ TI+A + E + IED Sbjct: 241 GVIKKEIADEALAMLRIDQEGLDFVDQKLLKTMIENYNGGPVGLSTIAANIGEEIETIED 300 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++EP+++Q GF+QRTPRGR++ + + HLG I + Sbjct: 301 MVEPFLLQAGFLQRTPRGRIVTHLGYTHLGYPITY 335 >gi|313683108|ref|YP_004060846.1| holliday junction DNA helicase subunit ruvb [Sulfuricurvum kujiense DSM 16994] gi|313155968|gb|ADR34646.1| Holliday junction DNA helicase subunit RuvB [Sulfuricurvum kujiense DSM 16994] Length = 335 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 169/321 (52%), Positives = 231/321 (71%), Gaps = 1/321 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + E+ + LRP ++ GQ + NL VFIEA+ R EALDHVLF GPPGLGKTTLA Sbjct: 11 NAEEVTETSLRPSAWNDYIGQEQIKKNLGVFIEASSKRGEALDHVLFYGPPGLGKTTLAL 70 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+G N + T+ P+I K+GDLAA+LTNLE+ D+LFIDEIHRLS VEEILYP+MEDF Sbjct: 71 IIANEMGSNIKVTAAPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEILYPSMEDF 130 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+++G GP+A++VKI+L RFTLI ATTR G+L+NPL+DRFG+ R+ FY ++L +I+ Sbjct: 131 RLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRDRFGMNFRMQFYTPDELCSII 190 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 + A G + +AA EIA RSRGTPRIA RLL+RVRDFA+VA+ TI E + AL + Sbjct: 191 TQAAIKLGKNIDKDAANEIAKRSRGTPRIALRLLKRVRDFADVANESTILHERSRYALDQ 250 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L I+ GFD++D+R L ++ G +G+ TI+A LSE IED++EPY++ G+++R Sbjct: 251 LGINANGFDEMDIRLLKLLMEA-KGRAMGLSTIAAALSEDEGTIEDVLEPYLLANGYLER 309 Query: 313 TPRGRLLMPIAWQHLGIDIPH 333 T RGR+ P ++ L P Sbjct: 310 TARGRVATPKTYELLKFGTPQ 330 >gi|77411220|ref|ZP_00787571.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae CJB111] gi|77413884|ref|ZP_00790061.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae 515] gi|77160067|gb|EAO71201.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae 515] gi|77162743|gb|EAO73703.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae CJB111] Length = 318 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 166/307 (54%), Positives = 218/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + LK+FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 6 LRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K+GDL A+L +LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 66 LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 125 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL I++R A + + Sbjct: 126 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEM 185 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRD+A++ I I D AL L +D G D Sbjct: 186 KITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVDHEGLD 245 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR+ Sbjct: 246 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATD 305 Query: 322 IAWQHLG 328 A++HLG Sbjct: 306 KAYEHLG 312 >gi|77409490|ref|ZP_00786180.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae COH1] gi|77171893|gb|EAO75072.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae COH1] Length = 318 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 166/307 (54%), Positives = 218/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + LK+FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 6 LRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K+GDL A+L +LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 66 LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 125 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL I++R A + + Sbjct: 126 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEM 185 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRD+A++ I I D AL L +D G D Sbjct: 186 KITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVDHEGLD 245 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR+ Sbjct: 246 YVDQKILRTMIEMYNGGPVGLGTLSVNITEERDTVEDMYEPYLIQKGFIMRTRTGRVATD 305 Query: 322 IAWQHLG 328 A++HLG Sbjct: 306 KAYEHLG 312 >gi|320161389|ref|YP_004174613.1| Holliday junction ATP-dependent DNA helicase RuvB [Anaerolinea thermophila UNI-1] gi|319995242|dbj|BAJ64013.1| Holliday junction ATP-dependent DNA helicase RuvB [Anaerolinea thermophila UNI-1] Length = 344 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 165/312 (52%), Positives = 225/312 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L++F GQ + NL + I AA+ R E L+HVLF GPPGLGKTTLA V+A E+GVN Sbjct: 23 LRPVRLKDFIGQDQIRENLSILITAARQRNEPLEHVLFYGPPGLGKTTLAHVLANEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+GP I KAGDLAA+LTNL+ D+LFIDEIHRL +EE+LYPAMEDF LD+M+G+G Sbjct: 83 IKITAGPAIEKAGDLAAILTNLKGGDILFIDEIHRLGKAIEEVLYPAMEDFALDIMIGKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+++ L RFT+I ATTR+ L++ PL+ RFG RL++Y++ ++ I++R A + Sbjct: 143 PAARSIRLKLPRFTVIGATTRLALISAPLRARFGAVYRLDYYDVNAIEAILKRAASRLQM 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V E EIA R+RGTPR+A RLLRRVRDFA+V H +T+ +A AL L +D +G D Sbjct: 203 TVEPEGFREIAHRARGTPRVALRLLRRVRDFAQVRHQGLVTQAVAAEALNLLNVDPLGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L+ I + GGPVG+ TI+A + E D I D++EPY++Q GF+ RTP+GR+ Sbjct: 263 EVDRRVLSTIILKYNGGPVGLNTIAASIGEEPDTIMDVVEPYLLQLGFLDRTPQGRVATQ 322 Query: 322 IAWQHLGIDIPH 333 A++HL I P Sbjct: 323 RAYEHLSIPYPQ 334 >gi|323126299|gb|ADX23596.1| Holliday junction DNA helicase RuvB [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 332 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 166/313 (53%), Positives = 221/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L +FIEAAK R E+LDHV+ GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKEQLTIFIEAAKLRDESLDHVMLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y+ DL IV+R A + + Sbjct: 140 DTSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFDM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPRIA RLL+RVRD+A++ IT +I D AL L +D+ G D Sbjct: 200 EIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVITAQITDKALTMLDVDREGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GF+ RT GR+ Sbjct: 260 YVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVATE 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG P + Sbjct: 320 KAYRHLGYPYPSK 332 >gi|297566961|ref|YP_003685933.1| Holliday junction DNA helicase RuvB [Meiothermus silvanus DSM 9946] gi|296851410|gb|ADH64425.1| Holliday junction DNA helicase RuvB [Meiothermus silvanus DSM 9946] Length = 326 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 174/312 (55%), Positives = 226/312 (72%), Gaps = 1/312 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LE++ GQ L V+++AAK R E LDH+L GPPGLGKTTLA V+A ELGVN Sbjct: 7 LRPKRLEDYVGQRRLKEKLAVYLQAAKNRGEPLDHMLLFGPPGLGKTTLAHVIANELGVN 66 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R TSGP I K GDLAA++TN +E+ D+LFIDEIHRLS EE LYPAMEDF++D+++G+ Sbjct: 67 IRVTSGPAIEKPGDLAAIVTNSIEEGDILFIDEIHRLSRAAEEHLYPAMEDFKIDIVIGQ 126 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR+++++L RFTLI ATTR GL++ PL+ RFGI L FY E+L V R A L G Sbjct: 127 GPAARTLRLDLPRFTLIGATTRPGLISGPLRSRFGIIEHLEFYTEEELAQGVMRDAALIG 186 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 LA+T+EAA EI RSRGT RIA RL RRVRD+AEVA T+T E A AL L +D MG Sbjct: 187 LAITEEAAHEIGRRSRGTMRIAKRLFRRVRDYAEVAGEDTVTLERAREALDALGLDSMGL 246 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 ++ D L + + FGGGPVG++T++ LSE +E++ EP++IQ GF++RTPRGR+ Sbjct: 247 ERRDRVILETLLQRFGGGPVGLDTLATALSEDPATLEEVHEPFLIQLGFLKRTPRGRVAT 306 Query: 321 PIAWQHLGIDIP 332 A+ HLG +P Sbjct: 307 ERAYHHLGYPLP 318 >gi|226226035|ref|YP_002760141.1| Holliday junction DNA helicase RuvB [Gemmatimonas aurantiaca T-27] gi|259495667|sp|C1A611|RUVB_GEMAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226089226|dbj|BAH37671.1| Holliday junction DNA helicase RuvB [Gemmatimonas aurantiaca T-27] Length = 342 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 173/332 (52%), Positives = 233/332 (70%), Gaps = 1/332 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M R + + V ED + L LRP+ L EF GQ +L + ++AA+AR E +DH+LF Sbjct: 1 MSRAEITTPEVLTEDTAVELSLRPQRLAEFIGQSRVKESLTIALDAARARKEPVDHLLFF 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++ARELGVN TSGP + K GDL A LT+L + DVLFIDEIHRL + Sbjct: 61 GPPGLGKTTLADLIARELGVNLTVTSGPALEKPGDLVAPLTSLREGDVLFIDEIHRLRPV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EE LY AMED+++D+ + +GP+AR+V +N+ RFTL+ ATTR+G+LT PL+ RFGI +L Sbjct: 121 IEEFLYSAMEDYRIDIRLADGPNARTVPMNIERFTLVGATTRLGMLTAPLRARFGIVHQL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +EDL+ IV+R ++ + + + A EIA RSRGTPR+A RLLRRVRD+AEV Sbjct: 181 GFYPVEDLEVIVRRTGEVLRVEMDADGAHEIARRSRGTPRVANRLLRRVRDYAEVRANGR 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ITRE+A+AAL L +D G D +D R L I F GGPVG+ T++A + E IE++ Sbjct: 241 ITREVAEAALALLDVDHFGLDDMDGRLLRAIIEKFEGGPVGLSTMAAAIGEDPGTIEEVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EP+++Q GF+QRTPRGR+ A++HLG P Sbjct: 301 EPFLVQHGFLQRTPRGRVATARAYRHLGFVPP 332 >gi|315640090|ref|ZP_07895214.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus italicus DSM 15952] gi|315484153|gb|EFU74625.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus italicus DSM 15952] Length = 332 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 171/328 (52%), Positives = 224/328 (68%), Gaps = 3/328 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MDR ++S S ED LRP+ L ++ GQ + L ++IEAAK R E+LDHVL Sbjct: 1 MDR--MISPEPSNEDLSFEKSLRPQYLSQYIGQEKVKHELAIYIEAAKKREESLDHVLLY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTT+A V+A E+ VN R+TSGP I K GDL ALL LE DVLFIDEIHRL + Sbjct: 59 GPPGLGKTTMAMVIANEMAVNIRTTSGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPRV 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF +D+MVG+GP+A V L FTLI ATTR G+L+ PL+DRFGI + Sbjct: 119 AEEMLYSAMEDFFVDIMVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVSHM 178 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y +L IVQR A++ + ++ A EIA RSRGTPRIA RLL+RVRDFA+V H + Sbjct: 179 EYYLDSELTEIVQRSAEVFSTVIQEQGAIEIARRSRGTPRIANRLLKRVRDFAQVQHDGS 238 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT+ +AD AL L +D G D +D + L + + GGPVG+ TI+ + E + +ED+ Sbjct: 239 ITKSVADQALDVLQVDHEGLDYIDQKLLRTMIELYHGGPVGLTTIAVNIGEETETVEDMY 298 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EP++IQ+GFIQRT RGR+ +A++H G Sbjct: 299 EPFLIQKGFIQRTARGRVATELAYRHFG 326 >gi|32266005|ref|NP_860037.1| Holliday junction DNA helicase RuvB [Helicobacter hepaticus ATCC 51449] gi|44888425|sp|Q7VIU8|RUVB_HELHP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|32262054|gb|AAP77103.1| holliday junction DNA helicase RuvB [Helicobacter hepaticus ATCC 51449] Length = 336 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 167/315 (53%), Positives = 229/315 (72%), Gaps = 8/315 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP EE+ GQ + NLKVFIEA+K R E LDH+LF GPPGLGKTTL+ ++A E+G N Sbjct: 14 LRPNVWEEYIGQEKIKKNLKVFIEASKKRKECLDHILFFGPPGLGKTTLSHIIAHEMGCN 73 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + ++ P+I K+GDLAA+LTNL + D+LFIDEIHRLS +EEILYPAMEDF+LD+++G G Sbjct: 74 IKVSAAPMIEKSGDLAAILTNLNEGDILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 133 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L+ FTLI ATTR G+L+NPL+DRFG+ RL FYE ++L IV + G Sbjct: 134 PAAQTLKIDLAPFTLIGATTRAGMLSNPLRDRFGMSFRLQFYEPKELSAIVICASSKLGR 193 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-------HAKTITREIADAALLRLA 254 +++ A EIA RSRGTPRIA RLLRRVRDFA+V + I+ E AL L Sbjct: 194 SLSKSGADEIARRSRGTPRIALRLLRRVRDFADVGEYAQDMRNQSEISLECVRYALNELG 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 ++++GFD+LDLRYL ++A + G +G+ TI+A +SE IED+IEPY++ G+++RT Sbjct: 254 VNELGFDELDLRYLAILAESRGKA-IGLNTIAAAMSEDEATIEDVIEPYLLANGYLERTA 312 Query: 315 RGRLLMPIAWQHLGI 329 +GR+ P ++ L I Sbjct: 313 KGRVASPKTYELLHI 327 >gi|25010124|ref|NP_734519.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae NEM316] gi|76787346|ref|YP_328775.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae A909] gi|77405263|ref|ZP_00782360.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae H36B] gi|44888495|sp|Q8E7U6|RUVB_STRA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|97190359|sp|Q3K3X8|RUVB_STRA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|23094475|emb|CAD45694.1| unknown [Streptococcus agalactiae NEM316] gi|76562403|gb|ABA44987.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae A909] gi|77176159|gb|EAO78931.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae H36B] gi|319744005|gb|EFV96385.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus agalactiae ATCC 13813] Length = 332 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 166/307 (54%), Positives = 218/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + LK+FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K+GDL A+L +LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL I++R A + + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRD+A++ I I D AL L +D G D Sbjct: 200 KITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATD 319 Query: 322 IAWQHLG 328 A++HLG Sbjct: 320 KAYEHLG 326 >gi|313206903|ref|YP_004046080.1| holliday junction DNA helicase ruvb [Riemerella anatipestifer DSM 15868] gi|312446219|gb|ADQ82574.1| Holliday junction DNA helicase RuvB [Riemerella anatipestifer DSM 15868] gi|325335660|gb|ADZ11934.1| Holliday junction resolvasome, helicase subunit [Riemerella anatipestifer RA-GD] Length = 340 Score = 339 bits (869), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 165/309 (53%), Positives = 222/309 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++ ++F GQ NL+VF+ AAK R ALDH L GPPGLGKTTLA ++A ELGV Sbjct: 23 IRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K G LA LLTNLE+ DVLFIDEIHRLS +VEE LY AMED+++D+M+ G Sbjct: 83 FKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+INL+ FTL+ ATTR G+LT P+ RFGI RL +Y +E L I++R A++ G+ Sbjct: 143 PNARSVQINLNPFTLVGATTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGI 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA EIA RSRGTPRIA LLRRVRDFAE+ I +I AL L +D+ G D Sbjct: 203 PIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNGEIEIKITKFALDSLNVDEFGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + ++ NF G PVGI ++ + E + +E++ EP++IQ+GFI RTPRGR + Sbjct: 263 DMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREVTD 322 Query: 322 IAWQHLGID 330 A++HL I+ Sbjct: 323 KAYKHLNIN 331 >gi|139438978|ref|ZP_01772438.1| Hypothetical protein COLAER_01444 [Collinsella aerofaciens ATCC 25986] gi|133775689|gb|EBA39509.1| Hypothetical protein COLAER_01444 [Collinsella aerofaciens ATCC 25986] Length = 355 Score = 339 bits (869), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 167/331 (50%), Positives = 236/331 (71%), Gaps = 1/331 (0%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M E ++ ++ ED D+ LRP+ L+++ GQ +L+V IEAA++R E LDHV+F Sbjct: 22 MAHGERMVGSELTPEDLDVDRTLRPQRLDDYCGQEHIKQSLRVLIEAAQSRGETLDHVIF 81 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA V+A ELG ++TSGP IA+ GDLAA+LTNL+ DVLFIDEIHRL+ Sbjct: 82 SGPPGLGKTTLATVIANELGAQIKTTSGPAIARTGDLAAILTNLQPGDVLFIDEIHRLNR 141 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMEDF LD+++G+GP+ARS+++++ +FTL+AATTR G+LT PL+DRFGI R Sbjct: 142 SVEEVLYPAMEDFALDIVIGKGPAARSIRLDIPKFTLVAATTRSGMLTGPLRDRFGISYR 201 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L++Y +E+L IV R A + G+ + +A EI RSRGTPR+A RLL+RVRD+A+V Sbjct: 202 LDYYTVEELAQIVTRSATILGVTIDHPSALEIGSRSRGTPRLANRLLKRVRDYAQVRGNG 261 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I +I AL ID++G D +D+R L +A+ F G VG+ T+++ + E +ED+ Sbjct: 262 PIELDICRQALEFFEIDELGLDWMDIRILETLAKTFSGRAVGLTTLASAVGEDPGTLEDV 321 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY++Q G + RTP+GR ++HLGI+ Sbjct: 322 YEPYLLQCGLMIRTPQGRQATLRTFEHLGIE 352 >gi|225867655|ref|YP_002743603.1| Holliday junction DNA helicase, subunit B [Streptococcus equi subsp. zooepidemicus] gi|259495678|sp|C0MC84|RUVB_STRS7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|225700931|emb|CAW97625.1| Holliday junction DNA helicase, subunit B [Streptococcus equi subsp. zooepidemicus] Length = 335 Score = 339 bits (869), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 167/307 (54%), Positives = 218/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ L +FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGV+ Sbjct: 20 LRPQYLREYIGQDRVKDQLMIFIEAAKRREESLDHVLLFGPPGLGKTTMAFVIANELGVH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y+ DL IV+R A + + Sbjct: 140 DTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQTADLTEIVERTADIFDM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPRIA RLL+RVRD+A++ IT +I D AL L +D+ G D Sbjct: 200 EIKHEAAYELARRSRGTPRIANRLLKRVRDYAQIMGDGMITTQITDKALTMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR++ Sbjct: 260 YVDQKILRTMIEVYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVVTE 319 Query: 322 IAWQHLG 328 A+QHLG Sbjct: 320 KAYQHLG 326 >gi|22536234|ref|NP_687085.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae 2603V/R] gi|44888492|sp|Q8E2D9|RUVB_STRA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|22533054|gb|AAM98957.1|AE014194_2 Holliday junction DNA helicase RuvB [Streptococcus agalactiae 2603V/R] Length = 332 Score = 339 bits (869), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 166/307 (54%), Positives = 218/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + LK+FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K+GDL A+L +LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL I++R A + + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRD+A++ I I D AL L +D G D Sbjct: 200 KITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATV 319 Query: 322 IAWQHLG 328 A++HLG Sbjct: 320 KAYEHLG 326 >gi|301301361|ref|ZP_07207503.1| Holliday junction DNA helicase RuvB [Lactobacillus salivarius ACS-116-V-Col5a] gi|300214786|gb|ADJ79202.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus salivarius CECT 5713] gi|300851021|gb|EFK78763.1| Holliday junction DNA helicase RuvB [Lactobacillus salivarius ACS-116-V-Col5a] Length = 336 Score = 339 bits (869), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 173/330 (52%), Positives = 226/330 (68%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M D E ++S + + ED + LRP+T +++ GQ + V+I+AAK R E+LDHVL Sbjct: 1 MYDEERIVSGDSFEGEDLNEQSLRPQTFDQYIGQKLLKDEISVYIQAAKQREESLDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA V+A E+GV ++T+GP I K GDL ALL LE DVLFIDEIHRL Sbjct: 61 YGPPGLGKTTLATVIANEMGVKIKTTTGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPK 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEILY AMED+ +D++VG+GP+A V L FTL+ ATTR GLL+ PL+ RFGI Sbjct: 121 NVEEILYSAMEDYFIDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRARFGIVGH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y DL I++R A++ + DE A EIA RSRGTPR+A RLL+RVRDFAEV H Sbjct: 181 MEYYNEVDLSQIIKRSAQILSTGIDDEGAHEIARRSRGTPRVANRLLKRVRDFAEVKHKD 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I EI AL L +DK+G D+ D + L + + GGPVG+ TI+A + E D I D+ Sbjct: 241 KIDTEIVQFALDLLRVDKVGLDRTDRKLLKAMIELYDGGPVGLNTIAANIGEESDTIADM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 IEPY++Q GFI+RTPRGR++ A++HLGI Sbjct: 301 IEPYLMQIGFIKRTPRGRMVTLAAYEHLGI 330 >gi|227891122|ref|ZP_04008927.1| Holliday junction DNA helicase B [Lactobacillus salivarius ATCC 11741] gi|227866996|gb|EEJ74417.1| Holliday junction DNA helicase B [Lactobacillus salivarius ATCC 11741] Length = 336 Score = 339 bits (869), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 173/330 (52%), Positives = 226/330 (68%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M D E ++S + + ED + LRP+T +++ GQ + V+I+AAK R E+LDHVL Sbjct: 1 MYDEERIVSGDSFEGEDLNEQSLRPQTFDQYIGQKLLKDEISVYIQAAKQREESLDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA V+A E+GV ++T+GP I K GDL ALL LE DVLFIDEIHRL Sbjct: 61 YGPPGLGKTTLATVIANEMGVKIKTTTGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPK 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEILY AMED+ +D++VG+GP+A V L FTL+ ATTR GLL+ PL+ RFGI Sbjct: 121 NVEEILYSAMEDYFIDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRARFGIVGH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y DL I++R A++ + DE A EIA RSRGTPR+A RLL+RVRDFAEV H Sbjct: 181 MEYYNEVDLSQIIKRSAQILSTGIDDEGAHEIARRSRGTPRVANRLLKRVRDFAEVKHKD 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I EI AL L +DK+G D+ D + L + + GGPVG+ TI+A + E D I D+ Sbjct: 241 KIDTEIVQFALDLLRVDKVGLDRTDRKLLKAMIELYDGGPVGLNTIAANIGEESDTIADM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 IEPY++Q GFI+RTPRGR++ A++HLGI Sbjct: 301 IEPYLMQIGFIKRTPRGRIVTLAAYEHLGI 330 >gi|76798796|ref|ZP_00781010.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae 18RS21] gi|76585858|gb|EAO62402.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae 18RS21] Length = 318 Score = 338 bits (868), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 166/307 (54%), Positives = 218/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + LK+FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 6 LRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K+GDL A+L +LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 66 LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 125 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +YE DL I++R A + + Sbjct: 126 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEM 185 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A RSRGTPRIA RLL+RVRD+A++ I I D AL L +D G D Sbjct: 186 KITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVDHEGLD 245 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR+ Sbjct: 246 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATV 305 Query: 322 IAWQHLG 328 A++HLG Sbjct: 306 KAYEHLG 312 >gi|283853684|ref|ZP_06370915.1| Holliday junction DNA helicase RuvB [Desulfovibrio sp. FW1012B] gi|283570925|gb|EFC18954.1| Holliday junction DNA helicase RuvB [Desulfovibrio sp. FW1012B] Length = 335 Score = 338 bits (868), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 167/306 (54%), Positives = 224/306 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+EF GQ E +NL+VF+ AA + ALDH L GPPGLGKTTLAQ++A ELGVN Sbjct: 24 IRPSKLDEFIGQDELRANLRVFLRAAMEQGRALDHSLLYGPPGLGKTTLAQIMASELGVN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +T+GPV+ + GDLAA++TNL D+LFIDEIHR+ VEEILYPAMED++LDL++G+G Sbjct: 84 LVTTTGPVLERCGDLAAIVTNLRRGDILFIDEIHRMPPAVEEILYPAMEDYKLDLIIGQG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+V+I+L FTL+ ATTR+GLLT+PL+DRFG+ RL FY ++L IV R A + G+ Sbjct: 144 PGARTVRIDLEPFTLVGATTRLGLLTSPLRDRFGVIFRLEFYNPDELARIVTRAAAILGI 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 VT A + RSRGTPRIA RLLRR+RDFA VA A T+ +A AL RL +D G D Sbjct: 204 GVTPAGARVVGERSRGTPRIANRLLRRLRDFAVVAGAATLDEGLAKEALARLDVDPQGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + L ++ ++ GGPVG++T++ +SE +E++ EPY+IQ G I+RTPRGR+ Sbjct: 264 QMDRKILEVLIGHYEGGPVGVKTLAVAISEEVRTLEEIYEPYLIQCGLIKRTPRGRVATA 323 Query: 322 IAWQHL 327 A+ H+ Sbjct: 324 KAYAHI 329 >gi|329117410|ref|ZP_08246127.1| Holliday junction DNA helicase RuvB [Streptococcus parauberis NCFD 2020] gi|326907815|gb|EGE54729.1| Holliday junction DNA helicase RuvB [Streptococcus parauberis NCFD 2020] Length = 332 Score = 338 bits (868), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 165/307 (53%), Positives = 219/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L +FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLTIFIEAAKMRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHR+ ++VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRMPMVVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y+++DL IV+R A + + Sbjct: 140 DTSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQVDDLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPRIA RLL+RVRD+A++ IT I D AL L +D G D Sbjct: 200 EIVHEAAHELARRSRGTPRIANRLLKRVRDYAQIMGDGVITDTITDKALDMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATE 319 Query: 322 IAWQHLG 328 A++HL Sbjct: 320 KAYRHLN 326 >gi|254302939|ref|ZP_04970297.1| crossover junction DNA helicase RuvB [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323131|gb|EDK88381.1| crossover junction DNA helicase RuvB [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 338 Score = 338 bits (868), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 159/309 (51%), Positives = 222/309 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++ +E+ GQ + + I+AA+ R +DH+L GPPGLGKTTLA V+A E+ N Sbjct: 20 LRPKSFDEYIGQENLKEKMNISIKAAQKRNMVVDHILLYGPPGLGKTTLAGVIANEMKAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+ VEEILYPAMED +LD+++G+G Sbjct: 80 LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEEILYPAMEDGELDIIIGKG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSA+S++I L FTLI ATTR GLL+ PL+DRFG+ ++ +Y ++K+I+ RGAK+ G+ Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNENEIKSIIIRGAKILGV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+ I + A AL L +D G D Sbjct: 200 KINEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGVIDKLSAKNALDMLGVDSNGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD + I N+ GGPVGIET+S L E R +E++ EPY+++ GF++RT RGR++ P Sbjct: 260 DLDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRVVTP 319 Query: 322 IAWQHLGID 330 A+QH D Sbjct: 320 KAYQHFKKD 328 >gi|198274019|ref|ZP_03206551.1| hypothetical protein BACPLE_00156 [Bacteroides plebeius DSM 17135] gi|198273097|gb|EDY97366.1| hypothetical protein BACPLE_00156 [Bacteroides plebeius DSM 17135] Length = 341 Score = 338 bits (868), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 169/307 (55%), Positives = 225/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F+GQ + NL++F++AA+ RAEALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLQFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ L I+ R A + + Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDSVLSRIILRSAHILDV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +AA EIA RSRGTPRIA LLRRVRDFA+V + I EIA AL L ID+ G D Sbjct: 203 PCDADAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGRIDLEIARFALEALNIDQYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ L E +E++ EP++I++GF++RTPRGR + Sbjct: 263 EIDNKILCTIIDKFKGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFLKRTPRGREVTE 322 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 323 LAYKHLG 329 >gi|313889567|ref|ZP_07823212.1| Holliday junction DNA helicase RuvB [Streptococcus pseudoporcinus SPIN 20026] gi|313122076|gb|EFR45170.1| Holliday junction DNA helicase RuvB [Streptococcus pseudoporcinus SPIN 20026] Length = 332 Score = 338 bits (868), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 163/306 (53%), Positives = 220/306 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L +FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQFLREYIGQDKVKDQLNIFIEAAKMRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K+GDL A+L +LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRIPMAVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y+++DL I++R + + + Sbjct: 140 DTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQVDDLTEIIERTSDIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPRIA RLL+RVRD+A++ IT++I D AL L +D+ G D Sbjct: 200 EIVQEAAHELARRSRGTPRIANRLLKRVRDYAQIMGNGVITKDITDKALEMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEIYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIVRTRTGRVATQ 319 Query: 322 IAWQHL 327 A+QHL Sbjct: 320 KAYQHL 325 >gi|313124266|ref|YP_004034525.1| holliday junction ATP-dependent DNA helicase ruvb [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280829|gb|ADQ61548.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 336 Score = 338 bits (868), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 166/311 (53%), Positives = 223/311 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ +++V+I+AA+ R EALDHVL GPPGLGKTTLA V+A ELGVN Sbjct: 22 LRPQLLSQYIGQGHVKKDMEVYIQAARQRDEALDHVLLYGPPGLGKTTLAFVIANELGVN 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGP I +AGDL ALLT+LE DVLFIDEIHRL+ VEE+LY AMEDF +D+MVGEG Sbjct: 82 LKSTSGPAIERAGDLVALLTDLEPGDVLFIDEIHRLAKPVEEVLYSAMEDFYIDIMVGEG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 + ++ + L FTLI ATT G L+ PL+DRFGI + +Y++EDL+ I+ R +++ Sbjct: 142 QTTHAIHLPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYQVEDLEKIILRSSEVFHT 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ +AA E+A RSRGTPR+A RLL+RVRDFAEV K I+ E AL +L +D G D Sbjct: 202 KISTQAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKEISLETTAMALKQLQVDSAGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q D + L + ++GGGPVGI T+++ + E R+ IE L EPY++Q GFI TPRGR++ Sbjct: 262 QTDRKLLRTMILSYGGGPVGIRTLASNIGEDRETIESLYEPYLLQNGFIVMTPRGRVVTQ 321 Query: 322 IAWQHLGIDIP 332 A+Q L + +P Sbjct: 322 KAYQQLNLPLP 332 >gi|223935333|ref|ZP_03627251.1| Holliday junction DNA helicase RuvB [bacterium Ellin514] gi|223896217|gb|EEF62660.1| Holliday junction DNA helicase RuvB [bacterium Ellin514] Length = 339 Score = 338 bits (868), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 166/326 (50%), Positives = 232/326 (71%), Gaps = 1/326 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++S +++ DA + + LRP +FTGQ + L++ + AAK R EALDH+L GPP Sbjct: 3 ERIISDVLTKPDAALEMTLRPSLFSDFTGQPKVKERLEITVAAAKQRNEALDHILLSGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A+ +G +F+STSGP I KA DLA LLTNLE DVLFIDEIHR+ +EE Sbjct: 63 GLGKTTLASILAKAMGASFKSTSGPTIEKAADLAGLLTNLEAGDVLFIDEIHRMQPAIEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 LYPAMEDF+LD+++ +GP+ARSV++NL RFTL+ ATTR GLL+ PL RF + RL++Y Sbjct: 123 YLYPAMEDFKLDIIIDQGPNARSVRLNLPRFTLVGATTRSGLLSAPLLTRFPVRERLDYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 + E L+ IV R A+L + + A EIA RSRGTPRI LLRRVRDFA+V IT+ Sbjct: 183 QAEQLEKIVLRSARLLNVEIEPSGAHEIARRSRGTPRITNNLLRRVRDFAQVRSDGNITK 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +IAD AL L ID+ G D++D R L + F GGPVG+ +++ + E D +E++ EPY Sbjct: 243 DIADKALAMLEIDENGLDEMDKRILEAVIVKFSGGPVGVSSLAVTVGEEPDTLEEVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329 +I +G+++RTP+GR+ ++++ LG+ Sbjct: 303 LIMEGYLKRTPQGRVATELSYKKLGL 328 >gi|332523602|ref|ZP_08399854.1| Holliday junction DNA helicase RuvB [Streptococcus porcinus str. Jelinkova 176] gi|332314866|gb|EGJ27851.1| Holliday junction DNA helicase RuvB [Streptococcus porcinus str. Jelinkova 176] Length = 332 Score = 338 bits (868), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 163/306 (53%), Positives = 219/306 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L +FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQFLREYIGQDKVKDQLNIFIEAAKMRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K+GDL A+L +LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRIPMAVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y+++DL I++R + + + Sbjct: 140 DTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQVDDLTEIIERTSDIFDM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPRIA RLL+RVRD+A++ IT++I D AL L +D G D Sbjct: 200 EIVQEAAHELARRSRGTPRIANRLLKRVRDYAQIMGNGIITKDITDKALEMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIVRTRTGRVATQ 319 Query: 322 IAWQHL 327 A+QHL Sbjct: 320 KAYQHL 325 >gi|157738008|ref|YP_001490692.1| Holliday junction DNA helicase RuvB [Arcobacter butzleri RM4018] gi|167012666|sp|A8EVP9|RUVB_ARCB4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157699862|gb|ABV68022.1| holliday junction DNA helicase RuvB [Arcobacter butzleri RM4018] Length = 345 Score = 338 bits (867), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 163/319 (51%), Positives = 231/319 (72%), Gaps = 1/319 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +ED + LRP +++ GQ + NL+VFI+A+K R EALDH+LF GPPGLGKTTL+ + Sbjct: 13 EEDNNEISLRPSNWDDYIGQEKIKKNLRVFIDASKKRKEALDHILFYGPPGLGKTTLSYL 72 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++ E+ N + T+GP+I K+GDLAA+LTNLE+ D+LFIDEIHRLS VEEILYPAMED++ Sbjct: 73 ISNEMNTNIKVTAGPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEILYPAMEDYR 132 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G GP+A++VKI+L RFTLI ATTR G+L+NPL++RFG+ R+ FY +L I+Q Sbjct: 133 LDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQFYTEIELAKIIQ 192 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 + + G D+A+ EI+ RSRGTPR+A RLLRRVRDF+EV + K+I + AL L Sbjct: 193 KASLKLGKNCEDDASLEISKRSRGTPRVALRLLRRVRDFSEVENEKSIHLQRCKYALDEL 252 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +++ GFD++D+ L ++ N G P+G+ TI+A LSE IED IEPY++ G+I+RT Sbjct: 253 GVNESGFDEMDINLLELLISN-RGKPMGLSTIAAALSEDEGTIEDAIEPYLLANGYIERT 311 Query: 314 PRGRLLMPIAWQHLGIDIP 332 RGR+ ++ + P Sbjct: 312 ARGRVASVKTYEMFRLSYP 330 >gi|116493019|ref|YP_804754.1| Holliday junction DNA helicase RuvB [Pediococcus pentosaceus ATCC 25745] gi|122265517|sp|Q03ER0|RUVB_PEDPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116103169|gb|ABJ68312.1| Holliday junction DNA helicase subunit RuvB [Pediococcus pentosaceus ATCC 25745] Length = 337 Score = 338 bits (867), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 168/316 (53%), Positives = 223/316 (70%), Gaps = 1/316 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ ++SL RP+TL ++ GQ + L+V+I AAK R EALDHVL GPPGLGKTTLA V Sbjct: 16 EENEELSL-RPQTLHQYIGQDQIKHELEVYIAAAKNREEALDHVLLYGPPGLGKTTLAMV 74 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+ V R+TSGP I K GDL ALL L+ DVLFIDEIHRL +VEE+LY AMEDF Sbjct: 75 IANEMNVQIRTTSGPAIEKPGDLVALLNELQPGDVLFIDEIHRLPKVVEEMLYSAMEDFF 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D++VG+GP+A + L FTLI ATTR GLL+ PL+DRFGI +N+Y DL IV+ Sbjct: 135 VDIVVGQGPTAHPIHFPLPPFTLIGATTRAGLLSAPLRDRFGIVEHMNYYNEADLANIVR 194 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + + D+ A EIA RSRGTPRI+ RLL+R+RDFAEV + I R++ +L L Sbjct: 195 RSAGIFNSHIDDQGAYEIASRSRGTPRISNRLLKRIRDFAEVENDGQIDRQLVSQSLKLL 254 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D G D+ D + LT + +GGGPVGI TI+A + E D I ++ EPY++Q GF++RT Sbjct: 255 QVDNRGLDRTDKKVLTTMIELYGGGPVGISTIAANIGEEPDTISEMYEPYLLQIGFLKRT 314 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR++ A++HLG+ Sbjct: 315 PRGRMVTERAYEHLGL 330 >gi|260772520|ref|ZP_05881436.1| holliday junction DNA helicase RuvB [Vibrio metschnikovii CIP 69.14] gi|260611659|gb|EEX36862.1| holliday junction DNA helicase RuvB [Vibrio metschnikovii CIP 69.14] Length = 355 Score = 338 bits (867), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 162/282 (57%), Positives = 214/282 (75%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ +++FI+AA+ R+E LDH+L GPPGLGKTTLA +VA E+ VN Sbjct: 25 IRPKKLADYQGQDHVRDQMEIFIQAAQKRSEPLDHLLIFGPPGLGKTTLANIVANEMDVN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAALLTNL++ DVLFIDEIHRLS ++EE+LYPAMED+QLD+M+GEG Sbjct: 85 IRTTSGPVLEKAGDLAALLTNLDENDVLFIDEIHRLSPMIEEVLYPAMEDYQLDIMIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y + DL+ IVQR A+ GL Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYNVADLQNIVQRSAQCLGL 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ + A E+A R+RGTPRIA RLLRRVRD+AEV I + A AL L +D +GFD Sbjct: 205 SMDADGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICLDTAGKALDMLDVDHLGFD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +D + L I F GGPVG++ ++A + E +D IED++EP+ Sbjct: 265 YMDRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIEDVLEPF 306 >gi|90962100|ref|YP_536016.1| Holliday junction DNA helicase RuvB [Lactobacillus salivarius UCC118] gi|123086776|sp|Q1WT18|RUVB_LACS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|90821294|gb|ABD99933.1| Holliday junction DNA helicase [Lactobacillus salivarius UCC118] Length = 336 Score = 338 bits (867), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 173/330 (52%), Positives = 226/330 (68%), Gaps = 1/330 (0%) Query: 1 MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M D E ++S + + ED + LRP+T +++ GQ + V+I+AAK R E+LDHVL Sbjct: 1 MYDEERIVSGDSFEGEDLNEQSLRPQTFDQYIGQKLLKDEISVYIQAAKQREESLDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA V+A E+GV ++T+GP I K GDL ALL LE DVLFIDEIHRL Sbjct: 61 YGPPGLGKTTLAIVIANEMGVKIKTTTGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPK 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEEILY AMED+ +D++VG+GP+A V L FTL+ ATTR GLL+ PL+ RFGI Sbjct: 121 NVEEILYSAMEDYFIDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRARFGIVGH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y DL I++R A++ + DE A EIA RSRGTPR+A RLL+RVRDFAEV H Sbjct: 181 MEYYNEVDLSQIIKRSAQILSTGIDDEGAHEIARRSRGTPRVANRLLKRVRDFAEVKHKD 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I EI AL L +DK+G D+ D + L + + GGPVG+ TI+A + E D I D+ Sbjct: 241 KIDTEIVQFALDLLRVDKVGLDRTDRKLLKAMIELYDGGPVGLNTIAANIGEESDTIADM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 IEPY++Q GFI+RTPRGR++ A++HLGI Sbjct: 301 IEPYLMQIGFIKRTPRGRMVTLAAYEHLGI 330 >gi|167753239|ref|ZP_02425366.1| hypothetical protein ALIPUT_01510 [Alistipes putredinis DSM 17216] gi|167659170|gb|EDS03300.1| hypothetical protein ALIPUT_01510 [Alistipes putredinis DSM 17216] Length = 338 Score = 338 bits (866), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 170/323 (52%), Positives = 227/323 (70%), Gaps = 3/323 (0%) Query: 10 RNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 +N+ ++D+ +RPR L+ F GQ + NL++FI+AA R ++LDHVL GPPGLG Sbjct: 5 KNIRNIESDLEFENQIRPRELDNFAGQEKIVDNLRIFIQAALMRGDSLDHVLLHGPPGLG 64 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A E+ + TSGPV+ K GDLA LLTNL DVLFIDEIHRLS +VEE LY Sbjct: 65 KTTLANIIANEMHAQLKVTSGPVLDKPGDLAGLLTNLNPGDVLFIDEIHRLSPLVEEYLY 124 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMED+++D+++ +GPSARS++I L+ FTLI ATTR GLLT+PL+ RFGI L +Y+ Sbjct: 125 SAMEDYKIDIVLDKGPSARSIQIELAPFTLIGATTRSGLLTSPLRARFGIQCHLEYYDSS 184 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 LK IV R A++ +++ +AA EIA+RSRGTPRIA LLRRVRDFA V I +I Sbjct: 185 VLKGIVNRSARILDVSIDSDAALEIALRSRGTPRIANALLRRVRDFAMVKGEGHIDLDIT 244 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 AL L ID G DQ+D + L+ I FGGGPVG+ TI+ +SE IE++ EP++I+ Sbjct: 245 RFALTALNIDSRGLDQMDNKILSTIIEKFGGGPVGLNTIATAVSEDAGTIEEVYEPFLIK 304 Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329 +GF++RTPRGR +A+ HLG Sbjct: 305 EGFLKRTPRGREATEMAYAHLGF 327 >gi|257462825|ref|ZP_05627231.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. D12] gi|317060454|ref|ZP_07924939.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D12] gi|313686130|gb|EFS22965.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D12] Length = 334 Score = 338 bits (866), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 221/309 (71%), Gaps = 3/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRT +E+ GQ + + I+AAK R +DHVL GPPGLGKTTLA V+A E+G N Sbjct: 20 LRPRTFQEYIGQESLKEKIFISIQAAKRRGTVIDHVLLYGPPGLGKTTLAGVIANEMGSN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ KAGDLAA+LT+LE+ DVLFIDEIHRL+ VEEILYPAMED +LD+++G+G Sbjct: 80 LKITSGPVLEKAGDLAAILTSLEENDVLFIDEIHRLNTAVEEILYPAMEDRELDIIIGKG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS++I L FTLI ATTR GLL+ PL+DRFGI ++ +Y ++K I+ RG K+ + Sbjct: 140 PAARSIRIELPNFTLIGATTRAGLLSAPLRDRFGISHKMEYYTEREVKEIILRGGKILEV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V A E+A RSRGTPRIA RLL+RVRD+AE+ IT+ IA AL L +D G D Sbjct: 200 EVEQAGAEELAKRSRGTPRIANRLLKRVRDYAEIRGEGIITKNIAIQALNLLGVDVEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L I N+GGGPVGIET+S L E R +E++ EPY+IQ+GF++RT RGR+ Sbjct: 260 ELDRNILHAIFENYGGGPVGIETLSLLLGEDRRTLEEVYEPYLIQKGFLKRTTRGRVATS 319 Query: 322 IA---WQHL 327 A W+ + Sbjct: 320 KATVYWKKM 328 >gi|260663387|ref|ZP_05864278.1| Holliday junction DNA helicase RuvB [Lactobacillus fermentum 28-3-CHN] gi|260552239|gb|EEX25291.1| Holliday junction DNA helicase RuvB [Lactobacillus fermentum 28-3-CHN] Length = 339 Score = 338 bits (866), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 172/329 (52%), Positives = 226/329 (68%), Gaps = 2/329 (0%) Query: 3 DREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 D + +LS V+ QE D LRP+TL + GQ L V+I+AAK+R EALDHVL Sbjct: 4 DFDDVLSNEVTDDQEGRDEVSLRPQTLATYIGQARIKHELAVYIQAAKSRGEALDHVLLY 63 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA V+A E+ V ++TSGP I K GDL ALL +L+ +VLFIDEIHRL + Sbjct: 64 GPPGLGKTTLAMVIANEMQVAIKTTSGPAIEKPGDLVALLNDLKPGNVLFIDEIHRLPKV 123 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LY AMEDF +D++VGEGP+A V L FTLI ATTR GLL PL+DRFGI R+ Sbjct: 124 VEEMLYSAMEDFYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGLLAAPLRDRFGIVARM 183 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 ++Y +L I+ R A + + ++ A E+A+RSRGTPRIA RLL+RVRDFA+V Sbjct: 184 DYYTTTELSQIIDRSATIFNTKIQEDGAHELALRSRGTPRIANRLLKRVRDFAQVGGQAA 243 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I D AL LA+D G D++D + LT + ++ GGPVGI TI+A + E + IE++ Sbjct: 244 IDPATVDRALDLLAVDDQGLDEIDRKLLTTMIEHYHGGPVGIRTIAANIGEEVNTIEEMY 303 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+ RTPRGR++ P A++HL I Sbjct: 304 EPYLLQIGFLMRTPRGRVVTPAAYEHLKI 332 >gi|149276279|ref|ZP_01882423.1| Holliday junction DNA helicase B [Pedobacter sp. BAL39] gi|149232799|gb|EDM38174.1| Holliday junction DNA helicase B [Pedobacter sp. BAL39] Length = 362 Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 172/325 (52%), Positives = 229/325 (70%), Gaps = 1/325 (0%) Query: 9 SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 S N+S + DI +LRP+ E+FTGQ + NLK+F++AAK R E LDHVL GPPGLGK Sbjct: 31 SENLSPVERDIEKVLRPQAFEDFTGQDKIMENLKIFVKAAKLRGEPLDHVLLHGPPGLGK 90 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTL+ ++A E+ V + TSGPV+ K GDLA LLT L+ D+LFIDEIHRLS +VEE LY Sbjct: 91 TTLSYIIANEMSVGIKVTSGPVLDKPGDLAGLLTGLDTGDILFIDEIHRLSPLVEEYLYS 150 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMEDF++D+M+ GP+ARSV+I+L+ FTL+ ATTR GLLT PL+ RFGI RL +Y+ + Sbjct: 151 AMEDFKIDIMLESGPNARSVQISLNPFTLVGATTRSGLLTAPLRARFGINSRLAYYDAKL 210 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L TIV R +++ +T+E A EIA RSRGTPRIA LLRR RDFA++ TI EI+ Sbjct: 211 LTTIVLRSSQILKTPITEEGAYEIARRSRGTPRIANALLRRTRDFAQIKGDGTINTEISR 270 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L +D+ G D++D + L I F GGPVG++TI+ + E IE++ EP++IQ+ Sbjct: 271 YALKALNVDEHGLDEMDNKILVTIIDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQE 330 Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332 GF+ RT RGR A++HL + P Sbjct: 331 GFLMRTSRGREATEAAYKHLQKNFP 355 >gi|227484943|ref|ZP_03915259.1| crossover junction endoribonuclease subunit B [Anaerococcus lactolyticus ATCC 51172] gi|227237098|gb|EEI87113.1| crossover junction endoribonuclease subunit B [Anaerococcus lactolyticus ATCC 51172] Length = 335 Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 165/308 (53%), Positives = 219/308 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ + L +FI+++ +R E LDHVL GPPGLGKTTL+ ++A ELGVN Sbjct: 24 IRPKWLRDYIGQDKVKEKLDIFIKSSLSREEPLDHVLLQGPPGLGKTTLSTIIANELGVN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I K DLA++LTNL + DVLFIDEIHR++ VEEILY AMEDF LD++VG+G Sbjct: 84 LRVTSGPAIEKPSDLASILTNLAEGDVLFIDEIHRINRSVEEILYSAMEDFVLDIIVGKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+S++I+L +FTLI ATTR G+L+ PL+DRFG+ + LN Y DL TIV+R A + + Sbjct: 144 PNAQSIRIDLEKFTLIGATTRAGMLSAPLRDRFGVLLSLNLYNSNDLTTIVKRSANILDI 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+ A EIA RSRGTPRIA RLL+RVRD+A V I E + L L ID MG D Sbjct: 204 PIDDKGAIEIAKRSRGTPRIANRLLKRVRDYAIVKADDKIDYETSRKGLELLEIDPMGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + + NF GGPVG++TI+A IED+ EPY++Q GFI RTPRGR+L Sbjct: 264 TMDKKIILTMYENFAGGPVGVDTIAASTGIENVTIEDVYEPYLLQIGFISRTPRGRVLTR 323 Query: 322 IAWQHLGI 329 A++H G+ Sbjct: 324 KAYEHYGL 331 >gi|255536338|ref|YP_003096709.1| Holliday junction DNA helicase RuvB [Flavobacteriaceae bacterium 3519-10] gi|255342534|gb|ACU08647.1| Holliday junction DNA helicase RuvB [Flavobacteriaceae bacterium 3519-10] Length = 346 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 170/332 (51%), Positives = 230/332 (69%), Gaps = 4/332 (1%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 D++ + QE+ +RP++ ++F GQ + NL+VF+ AAK R ALDHVL GP Sbjct: 14 DKDNFTDDELLQEEK----IRPQSFQDFAGQRKTLDNLEVFVAAAKNRGGALDHVLLHGP 69 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A ELGV + TSGPV+ K G LA LLTNLE+ DVLFIDEIHRLS IVE Sbjct: 70 PGLGKTTLAHIIANELGVGCKITSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPIVE 129 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E LY AMED+++D+M+ GP+ARSV+I L+ FTL+ ATTR G+LT P+ RFGI RL + Sbjct: 130 EYLYSAMEDYKIDIMLESGPNARSVQIGLNPFTLVGATTRSGMLTKPMLARFGIQSRLEY 189 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y IE L I++R A++ G+ + ++AA EIA RSRGTPRIA LLRRVRDFAE+ I Sbjct: 190 YTIELLGMIIERSARVLGVKIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNGEIE 249 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 I AL L +D+ G D +D + + ++ NF G PVGI ++ + E + +E++ EP Sbjct: 250 IGITKFALNSLNVDEFGLDDMDNKIMRVMIENFRGKPVGISALATSIGENPETLEEVYEP 309 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++IQ+GF+ RTPRGR + A++HL I +P R Sbjct: 310 FLIQEGFMIRTPRGREVTEKAYKHLNISLPRR 341 >gi|226356836|ref|YP_002786576.1| Holliday junction DNA helicase RuvB [Deinococcus deserti VCD115] gi|226318826|gb|ACO46822.1| putative Holliday junction ATP-dependent DNA helicase ruvB [Deinococcus deserti VCD115] Length = 334 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 170/311 (54%), Positives = 223/311 (71%), Gaps = 1/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL E+ GQ + L V+++AAK R EALDH L GPPGLGKTTLA ++A ELGVN Sbjct: 12 LRPKTLTEYVGQEKLKDKLGVYLQAAKGRREALDHTLLFGPPGLGKTTLAHIIAAELGVN 71 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL + EE LYPAMEDF+LD+++G+ Sbjct: 72 IRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKLDIVLGQ 131 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR++++ L RFTL+ ATTR GL+T P++ RFGI L +Y E++ T + R A+L G Sbjct: 132 GPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTAEEIGTNLLRDARLLG 191 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + ++AA EI RSRGT RIA RLLRRVRD+A+VA I+ E A AL + +D G Sbjct: 192 FGLEEDAALEIGARSRGTMRIAKRLLRRVRDYADVAGETVISLERAHDALDKQGLDAAGL 251 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D D +YL + F GGPVG++T++ +SE +ED+ EPY+IQ GFI+RTPRGR+ Sbjct: 252 DDRDKKYLETLIHRFAGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRTPRGRVAT 311 Query: 321 PIAWQHLGIDI 331 A+ HLG+ + Sbjct: 312 AHAYDHLGLPV 322 >gi|189460625|ref|ZP_03009410.1| hypothetical protein BACCOP_01266 [Bacteroides coprocola DSM 17136] gi|189432584|gb|EDV01569.1| hypothetical protein BACCOP_01266 [Bacteroides coprocola DSM 17136] Length = 342 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 168/307 (54%), Positives = 225/307 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +F+GQ + NL++F++AA+ RAEALDHVL GPPGLGKTTL+ ++A ELGV Sbjct: 23 LRPLQFGDFSGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELGVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 83 FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ L I+ R A + G+ Sbjct: 143 PSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDAVLSRIILRSASILGI 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +AA EIA RSRGTPRIA LLRRVRDFA+V + I EIA AL L ID+ G D Sbjct: 203 PCDVDAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGRIDVEIARYALEALNIDRYGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ L E +E++ EP++I++GF++RTPRGR + Sbjct: 263 EIDNKILCTIIDKFKGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFLKRTPRGREVTE 322 Query: 322 IAWQHLG 328 +A++HLG Sbjct: 323 LAYKHLG 329 >gi|258648908|ref|ZP_05736377.1| holliday junction DNA helicase RuvB [Prevotella tannerae ATCC 51259] gi|260850940|gb|EEX70809.1| holliday junction DNA helicase RuvB [Prevotella tannerae ATCC 51259] Length = 346 Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 171/311 (54%), Positives = 223/311 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP ++F+GQ + NL+VF+EAAK R E LDH L GPPGLGKTTLA ++A ELGV Sbjct: 26 LRPLRFDDFSGQQKVVDNLRVFVEAAKYRGEPLDHTLLHGPPGLGKTTLANIIANELGVG 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSGPV+ K GDLA LLT+LE DVLFIDEIHRL +VEE LY AMED+++D+M+ G Sbjct: 86 FKLTSGPVLDKPGDLAGLLTSLEPHDVLFIDEIHRLQPVVEEYLYSAMEDYRIDIMIDRG 145 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS++++L+ FTLI ATTR GLLT PL+ RFGI + L +Y+ + +I+ R A + G+ Sbjct: 146 PAARSIQLDLNPFTLIGATTRSGLLTAPLRARFGINLHLEYYDALTIGSILTRSAGILGV 205 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEA EIA RSRGTPRIA LLRRVRDFA+V TI EIA+ AL L ID+ G D Sbjct: 206 PLKDEARKEIAGRSRGTPRIANALLRRVRDFAQVKGTGTIDPEIANFALEALNIDRYGLD 265 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D + L I F GGPVGI TI+ + E +E++ EP++I++GFI+RTPRGR + Sbjct: 266 DTDNKILLTIIDKFKGGPVGIGTIATAIGEDPGTLEEVYEPFLIKEGFIRRTPRGREVTE 325 Query: 322 IAWQHLGIDIP 332 +A++HL +P Sbjct: 326 LAFKHLNRPLP 336 >gi|225853859|ref|YP_002735371.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae JJA] gi|254767444|sp|C1CC50|RUVB_STRZJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|225723832|gb|ACO19685.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae JJA] Length = 332 Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 168/313 (53%), Positives = 217/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y L IV+R A + + Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHAGLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 320 KAYEHLGYEYSEK 332 >gi|222151526|ref|YP_002560682.1| holliday junction DNA helicase RuvB [Macrococcus caseolyticus JCSC5402] gi|254767431|sp|B9E718|RUVB_MACCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|222120651|dbj|BAH17986.1| holliday junction DNA helicase RuvB [Macrococcus caseolyticus JCSC5402] Length = 337 Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 164/308 (53%), Positives = 224/308 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L ++ GQ + NL VFI+AAK R EALDHVL GPPGLGKTTLA ++A EL VN Sbjct: 22 LRPERLSQYIGQHKIKENLDVFIQAAKLRNEALDHVLLYGPPGLGKTTLANIIAHELDVN 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I + GDLAA+L++L DVLFIDEIHR+S +VEE+LYPAMEDF LD++VG+G Sbjct: 82 IKITSGPSIERPGDLAAILSSLNAGDVLFIDEIHRISRVVEEVLYPAMEDFCLDIVVGKG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ARS++I+L FTL+ ATTR G L+ PL+DRFG+ +RL++Y+++DL IV R A + + Sbjct: 142 EEARSIRIDLPPFTLVGATTRAGSLSAPLRDRFGVHLRLDYYDMKDLSHIVSRTADVFEV 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ ++ EIA+RSRGTPRIA RLL+RVRDFA+V + I E+ AL L +D+ G D Sbjct: 202 SIDAQSVQEIALRSRGTPRIANRLLKRVRDFAQVRNNGLIDIEMTTQALNLLQVDRYGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I + GGPVG++TI+ + E R +ED+ EPY+IQ+G ++RT RGR+ Sbjct: 262 HIDHKILRAIIERYNGGPVGLDTIAVSIGEERITLEDVYEPYLIQKGLLERTARGRVATI 321 Query: 322 IAWQHLGI 329 A++HL + Sbjct: 322 HAYEHLNV 329 >gi|237742214|ref|ZP_04572695.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 4_1_13] gi|256845487|ref|ZP_05550945.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_36A2] gi|294785207|ref|ZP_06750495.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_27] gi|229429862|gb|EEO40074.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 4_1_13] gi|256719046|gb|EEU32601.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_36A2] gi|294486921|gb|EFG34283.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_27] Length = 338 Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 158/306 (51%), Positives = 221/306 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++ +E+ GQ + + I+AA+ R +DH+L GPPGLGKTTLA V+A E+ N Sbjct: 20 LRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPPGLGKTTLAGVIANEMKAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+ VEEILYPAMED +LD+++G+G Sbjct: 80 LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEEILYPAMEDGELDIIIGKG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSA+S++I L FTLI ATTR GLL+ PL+DRFG+ ++ +Y ++K+I+ RGAK+ G+ Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNENEIKSIIIRGAKILGV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+ TI + A AL L +D G D Sbjct: 200 KINEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDKLSAKNALDMLGVDSNGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD + I N+ GGPVGIET+S L E R +E++ EPY+++ GF++RT RGR++ Sbjct: 260 DLDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRIVTS 319 Query: 322 IAWQHL 327 A+QH Sbjct: 320 KAYQHF 325 >gi|320528953|ref|ZP_08030045.1| Holliday junction DNA helicase RuvB [Selenomonas artemidis F0399] gi|320138583|gb|EFW30473.1| Holliday junction DNA helicase RuvB [Selenomonas artemidis F0399] Length = 344 Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 171/330 (51%), Positives = 227/330 (68%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 + E L+S D LRPR L E+ GQ + NL FI+AA +R EALDHVL GP Sbjct: 5 NEEELVSFEEQSTDGWQYSLRPRRLSEYIGQDKIKDNLSKFIQAALSRGEALDHVLLYGP 64 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL+D DVLFIDEIHRLS VE Sbjct: 65 PGLGKTTLAGIIANEMGANFRQTSAPAIERQGDLASLLTNLQDHDVLFIDEIHRLSHHVE 124 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 EILY AMED +D+++G+GPSARS++++L+ FTL+ ATT+ G L+ PL+DRFGI RL + Sbjct: 125 EILYSAMEDHAIDIIIGKGPSARSIRLDLAPFTLVGATTKTGALSAPLRDRFGIQTRLEY 184 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y E L I++R A++ + + E A EIA RSRGTPR+A R+L+RVRD A+VA I+ Sbjct: 185 YTPEALLLIIERTAEILSVTIEHEGALEIARRSRGTPRVANRILKRVRDIAQVAGEDIIS 244 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 + AAL L +D+ G + D L ++ F G PVG++T++A LSE + IED+ EP Sbjct: 245 HKTTLAALTALEVDEQGLENKDRTMLEVMITKFSGRPVGLKTLAAALSEMPETIEDVYEP 304 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Y+IQ GFI RT RGR++ ++H+ I P Sbjct: 305 YLIQLGFIARTARGRIVTRGGYEHMKIAYP 334 >gi|187250916|ref|YP_001875398.1| Holliday junction resolvasome helicase subunit [Elusimicrobium minutum Pei191] gi|186971076|gb|ACC98061.1| Holliday junction resolvasome, helicase subunit [Elusimicrobium minutum Pei191] Length = 340 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 172/336 (51%), Positives = 225/336 (66%), Gaps = 3/336 (0%) Query: 1 MMDREGLLSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M +L N S E+ + + LRP +L EF GQ NL VF+ AAK R EALDH L Sbjct: 1 MSSYNEVLDLNPSSEEKNGLDAALRPSSLREFVGQASLKENLHVFLTAAKKRGEALDHTL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRL 117 F PPGLGKTTLA ++A+E+GVN ++TSGPV+++ GDLAA+LT + + D+LF+DEIHRL Sbjct: 61 FYSPPGLGKTTLANILAKEMGVNIKTTSGPVLSRPGDLAAMLTTEISEGDILFVDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 + VEE LYPAMEDF + G+G + ++K+++ +FTL+ ATTR GLLT PL+DRFGI Sbjct: 121 NPAVEEALYPAMEDFNFFINTGKGAGSTTLKLSVPKFTLVGATTRSGLLTGPLRDRFGIV 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 LNFYEI ++ I++R AKL + +A RSRGTPRIA RLLRR RDFA+V Sbjct: 181 FNLNFYEITEIADILERSAKLLNIEADRRGLEALAARSRGTPRIANRLLRRARDFAQVKG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 IT +IAD A+ L ID G D +D R L + FGGGPVG+E ++ +SE D + Sbjct: 241 DGVITCDIADIAMQSLDIDAEGLDTMDKRILEALIEKFGGGPVGVENLAIAVSESIDTLT 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 D+IEPY+I+ GFI RTPRGR+ A+ HLG P Sbjct: 301 DVIEPYLIKAGFIARTPRGRVATKKAYDHLGRKSPE 336 >gi|114566955|ref|YP_754109.1| Holliday junction DNA helicase RuvB [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318041|sp|Q0AX16|RUVB_SYNWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|114337890|gb|ABI68738.1| Holliday junction DNA helicase subunit RuvB [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 344 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 170/328 (51%), Positives = 233/328 (71%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+D + S + ++D + + +RP L E+ GQ + N++VFI AA+ R E+LDHVL Sbjct: 1 MLDERLISSHLLDEDDNNENSIRPGRLSEYIGQEKVKENVEVFITAARERKESLDHVLLS 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+G R TSGP I + GDLAA+LTNLE +VLFIDEIHRL+ Sbjct: 61 GPPGLGKTTLASIIANEVGKPIRKTSGPAIERPGDLAAILTNLEPGEVLFIDEIHRLNRN 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEI+YPAMED+ +D+++G+GP+AR+++++L FTLI ATTR GLL++PL+DRFGI RL Sbjct: 121 VEEIMYPAMEDYVIDIIIGKGPAARTLRLDLPPFTLIGATTRPGLLSSPLRDRFGISCRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FY +L I+ R A++ +++ E A EIA RSRGTPR+A RLLRRVRD+A V Sbjct: 181 DFYTPLELSEIILRAARILEISLDKEGATEIAGRSRGTPRVANRLLRRVRDYALVKGNGN 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +A AL L ID+ G D +D L I F GGPVG++T++A +SE D I D+ Sbjct: 241 IDFSLAKWALEMLEIDECGLDVMDRMILEAIIGKFSGGPVGLDTLAASVSEESDTISDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EPY+++ GFIQ+TPRGR+ A++HLG Sbjct: 301 EPYLLKLGFIQKTPRGRMATEHAYRHLG 328 >gi|313895524|ref|ZP_07829080.1| Holliday junction DNA helicase RuvB [Selenomonas sp. oral taxon 137 str. F0430] gi|312975650|gb|EFR41109.1| Holliday junction DNA helicase RuvB [Selenomonas sp. oral taxon 137 str. F0430] Length = 344 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 171/330 (51%), Positives = 227/330 (68%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 + E L+S D LRPR L E+ GQ + NL FI+AA +R EALDHVL GP Sbjct: 5 NEEELVSFEEQSTDGWQYSLRPRRLSEYIGQDKIKDNLSKFIQAALSRGEALDHVLLYGP 64 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL+D DVLFIDEIHRLS VE Sbjct: 65 PGLGKTTLAGIIANEMGANFRQTSAPAIERQGDLASLLTNLQDHDVLFIDEIHRLSHHVE 124 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 EILY AMED +D+++G+GPSARS++++L+ FTL+ ATT+ G L+ PL+DRFGI RL + Sbjct: 125 EILYSAMEDHAIDIIIGKGPSARSIRLDLAPFTLVGATTKTGALSAPLRDRFGIQARLEY 184 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y E L I++R A++ + + E A EIA RSRGTPR+A R+L+RVRD A+VA I+ Sbjct: 185 YTPEALLLIIERTAEILSVTIEHEGALEIARRSRGTPRVANRILKRVRDIAQVAGEDIIS 244 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 + AAL L +D+ G + D L ++ F G PVG++T++A LSE + IED+ EP Sbjct: 245 HKTTLAALTALEVDEQGLENKDRTMLEVMITKFSGRPVGLKTLAAALSEMPETIEDVYEP 304 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Y+IQ GFI RT RGR++ ++H+ I P Sbjct: 305 YLIQLGFIARTARGRIVTRGGYEHMKIAYP 334 >gi|19704552|ref|NP_604114.1| Holliday junction DNA helicase RuvB [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328431|ref|ZP_06870957.1| crossover junction ATP-dependent DNA helicase RuvB [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|22001977|sp|Q8RE97|RUVB_FUSNN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|19714838|gb|AAL95413.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154505|gb|EFG95297.1| crossover junction ATP-dependent DNA helicase RuvB [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 332 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 158/306 (51%), Positives = 221/306 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++ +E+ GQ + + I+AA+ R +DH+L GPPGLGKTTLA V+A E+ N Sbjct: 20 LRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPPGLGKTTLAGVIANEMKAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+ VEEILYPAMED +LD+++G+G Sbjct: 80 LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEEILYPAMEDGELDIIIGKG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSA+S++I L FTLI ATTR GLL+ PL+DRFG+ ++ +Y ++K+I+ RGAK+ G+ Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNENEIKSIIIRGAKILGV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+ TI + A AL L +D G D Sbjct: 200 KINEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDKLSAKNALDMLGVDSNGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LD + I N+ GGPVGIET+S L E R +E++ EPY+++ GF++RT RGR++ Sbjct: 260 DLDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRVVTS 319 Query: 322 IAWQHL 327 A+QH Sbjct: 320 KAYQHF 325 >gi|148243842|ref|YP_001220081.1| Holliday junction DNA helicase B [Acidiphilium cryptum JF-5] gi|146400405|gb|ABQ28939.1| Holliday junction DNA helicase subunit RuvB [Acidiphilium cryptum JF-5] Length = 312 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 171/304 (56%), Positives = 213/304 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L +F GQ + NL FI AA R +LDHVL GPPGLGKTT+AQ++A E+ N Sbjct: 5 LRPQGLADFVGQADTMRNLATFIRAALIRGVSLDHVLLNGPPGLGKTTIAQIIAHEMNCN 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++ GP + +A DLAA+LT ++ +VLFIDEIHR+ EILY AMEDF LD+++GEG Sbjct: 65 LKTIIGPAVQRAADLAAVLTTMQPNEVLFIDEIHRVQPAAAEILYGAMEDFTLDILIGEG 124 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARSV+I+L RFTLI ATTR G L PL+DRFGI + L FY EDL IV R A + G+ Sbjct: 125 PQARSVRIDLPRFTLIGATTRSGSLPAPLRDRFGIHLGLEFYSPEDLVRIVTRSAGMLGI 184 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A EIA RSRGTPRIA RLLRRV DFA VA IT IAD AL LA+D+ G D Sbjct: 185 GMMPEGAMEIARRSRGTPRIANRLLRRVHDFAVVAGVVAITDTIADMALSSLAVDRRGLD 244 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD RY+ I GGGPVGI+T++ GL E R+ IED+IEP+++ G I RT RGR+L P Sbjct: 245 KLDRRYIDWIDTVHGGGPVGIDTLATGLGEARETIEDVIEPFLVASGIITRTSRGRVLTP 304 Query: 322 IAWQ 325 A++ Sbjct: 305 KAYE 308 >gi|221231160|ref|YP_002510312.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae ATCC 700669] gi|220673620|emb|CAR68107.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae ATCC 700669] Length = 323 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 168/313 (53%), Positives = 217/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 11 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 71 LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y L IV+R A + + Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHAGLTEIVERTADIFEM 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ I I D AL L +D G D Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALTMLDVDHEGLD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 251 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310 Query: 322 IAWQHLGIDIPHR 334 A++HLG + + Sbjct: 311 KAYEHLGYEYSEK 323 >gi|83815259|ref|YP_445272.1| Holliday junction DNA helicase B [Salinibacter ruber DSM 13855] gi|97190287|sp|Q2S3F9|RUVB_SALRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|83756653|gb|ABC44766.1| Holliday junction DNA helicase RuvB [Salinibacter ruber DSM 13855] Length = 344 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 165/330 (50%), Positives = 228/330 (69%), Gaps = 1/330 (0%) Query: 4 REGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 R L + D D+ LLRP++L+EF GQ + NL VF++AA R E LDHVL GP Sbjct: 5 RSDALKAEADRSDNDVEKLLRPQSLDEFVGQEKIKENLNVFMKAALQRGETLDHVLLSGP 64 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A E+G R++SGPV+ K D+A +LTNLE+ D+LFIDEIHRLS +VE Sbjct: 65 PGLGKTTLAHIIANEMGARIRTSSGPVLEKPADIAGVLTNLEEGDLLFIDEIHRLSSVVE 124 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E LY AMED+++D+++ +GP+AR+V+I+L FT++ ATTR GLLT PL+ RFGI R ++ Sbjct: 125 EYLYSAMEDYRIDIVIDQGPNARTVQIDLPPFTMVGATTRKGLLTAPLRARFGIDFRYDY 184 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y + L+ I QR A++ + T + A EIA RSRGTPR+A RLLRR RDFAEV IT Sbjct: 185 YTADLLQEITQRSARILDVETTPDGAYEIARRSRGTPRVANRLLRRTRDFAEVEGDGEIT 244 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 + IAD AL L +D+ G D +D R L + NF GGP G++ ++ + E +E++ EP Sbjct: 245 KAIADRALNALDVDEEGLDDMDARILLTLIDNFDGGPTGLKNLAVSVGEESGTLEEVYEP 304 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Y+IQ+GF++RTP+GR+ + A+ H P Sbjct: 305 YLIQEGFMERTPQGRVALQRAYDHFDRSSP 334 >gi|154148614|ref|YP_001406316.1| Holliday junction DNA helicase B [Campylobacter hominis ATCC BAA-381] gi|166231478|sp|A7I1C5|RUVB_CAMHC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|153804623|gb|ABS51630.1| holliday junction DNA helicase RuvB [Campylobacter hominis ATCC BAA-381] Length = 340 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 169/328 (51%), Positives = 235/328 (71%), Gaps = 2/328 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MDR + + +E+ + SL RP + +++ GQ + NLKVFI AAK RAE LDHVLF G Sbjct: 1 MDRIVEIEKADFEEEIETSL-RPTSFDDYIGQSKIKENLKVFIAAAKKRAECLDHVLFYG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+GV+ + T+ P+I K+GDLAA+LTNLE+ DVLFIDEIHRLS + Sbjct: 60 PPGLGKTTLAHIIANEMGVSIKITAAPMIEKSGDLAAILTNLEENDVLFIDEIHRLSSAI 119 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF+LD+++G GP+A+++KI++ +FTLI ATTR G+++ PL+DRFG+ RLN Sbjct: 120 EEVLYSAMEDFRLDIIIGSGPAAQTIKIDIPKFTLIGATTRAGMISAPLRDRFGMQFRLN 179 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY ++L IVQ A AA +IA RSRGTPRIA RLL+R+RDFAEV + I Sbjct: 180 FYTSDELAKIVQIAAVKLNKECEKNAALQIAKRSRGTPRIALRLLKRIRDFAEVNNENII 239 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 A ++L L ++ +GFD++DL+YL ++ +G+ TISA LSE IED+IE Sbjct: 240 NENRAKSSLDALGVNDLGFDEMDLKYLEILGST-KNRALGLSTISAALSEDEGTIEDVIE 298 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 PY++ G+I+RT +GR++ + + LGI Sbjct: 299 PYLLANGYIERTAKGRIITAKSCEILGI 326 >gi|311745415|ref|ZP_07719200.1| holliday junction DNA helicase RuvB [Algoriphagus sp. PR1] gi|126577964|gb|EAZ82184.1| holliday junction DNA helicase RuvB [Algoriphagus sp. PR1] Length = 344 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 177/327 (54%), Positives = 228/327 (69%), Gaps = 4/327 (1%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 D E L S++ E A LRP + E+FTGQ + NL+VF+ AAK R+E LDHVL GP Sbjct: 9 DDEHLSSKDKEYEKA----LRPLSFEDFTGQFKIIENLRVFVLAAKKRSEPLDHVLLHGP 64 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTL+ ++A EL + TSGPV+ K DLA LLTNLE+ DVLFIDEIHRL+ IVE Sbjct: 65 PGLGKTTLSHIIANELQSGIKITSGPVLDKPSDLAGLLTNLEEGDVLFIDEIHRLNPIVE 124 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E LY AMEDF++D+M+ GP+ARSV+I+LS FTLI ATTR GLLT+PL+ RFGI RL + Sbjct: 125 EYLYSAMEDFRIDIMLDSGPNARSVQISLSPFTLIGATTRSGLLTSPLRARFGINSRLEY 184 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y+ + L IV R A + + + AA EIA RSRGTPRI+ LLRR RDFAEV T+T Sbjct: 185 YDAKLLTDIVCRSAGILQTPIEEVAAYEIARRSRGTPRISNMLLRRTRDFAEVKGDGTVT 244 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA AL L +D+ G D++D R L I F GGPVG+ TI+ E + IE++ EP Sbjct: 245 LAIAKMALDALDVDEHGLDEMDNRILLTIIDKFKGGPVGLSTIATACGEEAETIEEVYEP 304 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329 ++IQ+G+++RT RGR+ +A++HL I Sbjct: 305 FLIQEGYLKRTARGRMATEMAYKHLNI 331 >gi|225869523|ref|YP_002745470.1| Holliday junction DNA helicase, subunit B [Streptococcus equi subsp. equi 4047] gi|254767441|sp|C0M7R2|RUVB_STRE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|225698927|emb|CAW91941.1| Holliday junction DNA helicase, subunit B [Streptococcus equi subsp. equi 4047] Length = 335 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 166/307 (54%), Positives = 217/307 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ L +FIEAAK R E+LDHVL G PGLGKTT+A V+A ELGV+ Sbjct: 20 LRPQYLREYIGQDRVKDQLMIFIEAAKRREESLDHVLLFGSPGLGKTTMAFVIANELGVH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV + L FTLI ATTR G+L+NPL+ RFGI + +Y+ DL IV+R A + + Sbjct: 140 DTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQTADLTEIVERTADIFDM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPRIA RLL+RVRD+A++ IT +I D AL L +D+ G D Sbjct: 200 TIKHEAAYELARRSRGTPRIANRLLKRVRDYAQIMGDGMITTQITDKALTMLDVDQEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E RD +ED+ EPY+IQ+GFI RT GR++ Sbjct: 260 YVDQKILRTMIEVYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVVTE 319 Query: 322 IAWQHLG 328 A+QHLG Sbjct: 320 KAYQHLG 326 >gi|242373941|ref|ZP_04819515.1| Holliday junction DNA helicase B [Staphylococcus epidermidis M23864:W1] gi|242348295|gb|EES39897.1| Holliday junction DNA helicase B [Staphylococcus epidermidis M23864:W1] Length = 339 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 165/327 (50%), Positives = 228/327 (69%), Gaps = 2/327 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD+ ++ + ED+ L LRP L+++ GQ SNL+VFI+AAK R E LDHVL Sbjct: 6 MDKR-MVDQEFHDEDSAFELSLRPTKLKQYIGQSSIKSNLEVFIKAAKLREEPLDHVLLF 64 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS + Sbjct: 65 GPPGLGKTTLSNIIANEMEVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 124 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +RL Sbjct: 125 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 184 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y +LK I+ R A++ + +E+A E+A RSRGTPR+A RLL+RVRDF +V Sbjct: 185 EYYNENELKEIITRTAEVLDTGIDEESALELARRSRGTPRVANRLLKRVRDFQQVNEDDQ 244 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I E AL L +D+ G D +D + + I + GGPVG++TI+ + E R IED+ Sbjct: 245 IYIETTKRALQLLQVDQEGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERITIEDVY 304 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EP++IQ+GF++RTPRGR A++H Sbjct: 305 EPFLIQKGFLERTPRGRKATAFAYEHF 331 >gi|327439541|dbj|BAK15906.1| holliday junction resolvasome, helicase subunit [Solibacillus silvestris StLB046] Length = 334 Score = 336 bits (862), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 172/329 (52%), Positives = 229/329 (69%), Gaps = 3/329 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR +LS + + L LRP+ L ++ GQ + NLK+FIEAAK R E+LDHVL Sbjct: 1 MSDR--VLSGEATDAEQQFELSLRPQRLAQYIGQDKVKENLKIFIEAAKLRQESLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA V+A E+ VN + TSGP I + GDLAA+L++LE DVLFIDEIHRL Sbjct: 59 YGPPGLGKTTLAIVIANEMDVNVKMTSGPAIERPGDLAAILSSLEAGDVLFIDEIHRLPR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +EE+LY AMEDF LD++VG+GP ARS+++ L FTL+ ATTR G L+ PL+DRFG+ R Sbjct: 119 AIEEVLYSAMEDFCLDIVVGKGPEARSIRLELPPFTLVGATTRAGALSAPLRDRFGVLSR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y+ + L IV R +L G+A+ AA EIA RSRGTPRIA RLL+RVRD+A+V Sbjct: 179 LEYYDEQSLAEIVIRSGELFGVALDKHAAFEIARRSRGTPRIANRLLKRVRDYAQVLADG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 ++ +A+ AL L +D G D +D + + + FGGGPVG++ ++A + E R IED+ Sbjct: 239 IVSTSLAEQALELLQVDPRGLDHIDHKLMQSMIERFGGGPVGLDALAASIGEERITIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EPY++Q GFIQRTPRGR+ + + H G Sbjct: 299 YEPYLLQIGFIQRTPRGRIATNLCYDHFG 327 >gi|269792532|ref|YP_003317436.1| Holliday junction DNA helicase RuvB [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100167|gb|ACZ19154.1| Holliday junction DNA helicase RuvB [Thermanaerovibrio acidaminovorans DSM 6589] Length = 347 Score = 336 bits (862), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 169/332 (50%), Positives = 231/332 (69%), Gaps = 3/332 (0%) Query: 1 MMDREGLLSRNVSQEDADI---SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M E L+ R ++D D+ LRP +L+ F GQ L++FI A+K R E LDH Sbjct: 1 MGSDEKLMHRLREEDDGDVVAGRALRPESLDSFVGQEALKEKLRIFIAASKGRGEPLDHC 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 LF GPPGLGKTT+A ++ARE+G + R T+GP I +AGDLAA+L+NL +DVLFIDEIHRL Sbjct: 61 LFYGPPGLGKTTMANIIAREMGGDLRVTTGPAIERAGDLAAILSNLRPKDVLFIDEIHRL 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 +VEE+LY AMEDF L++++G+GP ARS+K+ L FTL+ ATTR+GLLT+PL+ RFGI Sbjct: 121 PSVVEEVLYSAMEDFCLNIVIGKGPMARSIKLQLPPFTLVGATTRLGLLTSPLRARFGIV 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 ++ Y E+L IV+RGA++ G+++ DEA+ EI RSRGTPR+A RLLRRVRD A V+ Sbjct: 181 EQMELYTPEELTAIVRRGAEILGMSIEDEASYEIGRRSRGTPRVALRLLRRVRDVASVSG 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 I + A AL L +DK G D D ++L + F GGPVG+ T++A L+E IE Sbjct: 241 VAVIDIKTAKGALDMLGVDKEGLDDGDRKFLRALVELFDGGPVGLSTLAAALNEDPQTIE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 D+ EP++IQ+G ++RTPRGR + +LG+ Sbjct: 301 DIYEPFLIQKGLLERTPRGRKATRGTYSYLGV 332 >gi|81427981|ref|YP_394980.1| Holliday junction DNA helicase B [Lactobacillus sakei subsp. sakei 23K] gi|97190125|sp|Q38YQ9|RUVB_LACSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|78609622|emb|CAI54668.1| Holliday junction DNA helicase RuvB [Lactobacillus sakei subsp. sakei 23K] Length = 335 Score = 336 bits (861), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 172/331 (51%), Positives = 226/331 (68%), Gaps = 6/331 (1%) Query: 10 RNVSQEDADIS------LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 R VS E+ D + LRP+ L ++ GQ + L V+IEAAK R E+LDHVL GPP Sbjct: 5 RIVSAENDDFAEASIEKTLRPQVLAQYIGQDRVKNELAVYIEAAKKREESLDHVLLYGPP 64 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA V+A EL V R+TSGP I + GDL ALL L+ DVLFIDEIHRL +VEE Sbjct: 65 GLGKTTLAMVIANELQVQIRTTSGPAIERPGDLVALLNELQPGDVLFIDEIHRLPKMVEE 124 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LY AMEDF +D++VG+GP+A V L FTLI ATTR GLL+ PL+DRFGI + +Y Sbjct: 125 LLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGLLSAPLRDRFGIVEHMAYY 184 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 DL IVQR A + +++ + A EIA RSRGTPRIA RLL+R RD+A+VA TI + Sbjct: 185 TEADLMDIVQRSAGVFNMSIVPDGALEIARRSRGTPRIANRLLKRTRDYAQVADQNTIDQ 244 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 IAD AL +L +D G D +D + L M+ + GGPVG++TI+A + E + IE++ EPY Sbjct: 245 AIADHALSQLQVDIRGLDGVDRKILQMMIDYYQGGPVGLKTIAANIGEENETIEEVYEPY 304 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++Q GF++RT RGR++ P + HLG+ P + Sbjct: 305 LLQIGFLKRTQRGRMVTPAGYAHLGMPYPEK 335 >gi|104774419|ref|YP_619399.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514517|ref|YP_813423.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274751|sp|Q048Y7|RUVB_LACDB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|123378384|sp|Q1G941|RUVB_LACDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|103423500|emb|CAI98402.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093832|gb|ABJ58985.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126229|gb|ADY85559.1| Helicase Holliday junction [Lactobacillus delbrueckii subsp. bulgaricus 2038] gi|325685739|gb|EGD27817.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 336 Score = 336 bits (861), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 165/311 (53%), Positives = 223/311 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ +++V+I+AA+ R EALDHVL GPPGLGKTTLA V+A ELGVN Sbjct: 22 LRPQLLSQYIGQGHVKKDMEVYIQAARQRDEALDHVLLYGPPGLGKTTLAFVIANELGVN 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGP I +AGDL ALLT+LE DVLFIDEIHRL+ VEE+LY AMEDF +D++VGEG Sbjct: 82 LKSTSGPAIERAGDLVALLTDLEPGDVLFIDEIHRLAKPVEEVLYSAMEDFYIDIVVGEG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 + ++ + L FTLI ATT G L+ PL+DRFGI + +Y++EDL+ I+ R +++ Sbjct: 142 QTTHAIHLPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYQVEDLEKIILRSSEVFHT 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ +AA E+A RSRGTPR+A RLL+RVRDFAEV K I+ E AL +L +D G D Sbjct: 202 KISPQAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKEISLETTAMALKQLQVDSAGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q D + L + ++GGGPVGI T+++ + E R+ IE L EPY++Q GFI TPRGR++ Sbjct: 262 QTDRKLLRTMILSYGGGPVGIRTLASNIGEDRETIESLYEPYLLQNGFIVMTPRGRVVTQ 321 Query: 322 IAWQHLGIDIP 332 A+Q L + +P Sbjct: 322 KAYQQLNLPLP 332 >gi|197121427|ref|YP_002133378.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter sp. K] gi|220916124|ref|YP_002491428.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter dehalogenans 2CP-1] gi|238689870|sp|B4UFY1|RUVB_ANASK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767404|sp|B8JF05|RUVB_ANAD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|196171276|gb|ACG72249.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter sp. K] gi|219953978|gb|ACL64362.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter dehalogenans 2CP-1] Length = 342 Score = 336 bits (861), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 164/311 (52%), Positives = 220/311 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP T +++ GQV+ N+KV+ AA+ R E+LDHVL GPPGLGKT+LA ++ARELGV Sbjct: 24 LRPATFDDYVGQVKIVDNVKVYAAAARQRGESLDHVLLSGPPGLGKTSLAHILARELGVT 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGP + K GDLA LLT L RD+LFIDEIHRLS VEE LYPAMED++ D+++G G Sbjct: 84 LHVTSGPALVKKGDLAGLLTALAPRDILFIDEIHRLSPAVEEALYPAMEDYRFDVVLGAG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A+++++ L RFTL+ ATTR GLL +PL+DRF I RL +Y +LK I R A+ GL Sbjct: 144 LGAQTMEMKLERFTLVGATTRTGLLASPLRDRFPIQERLEYYGPAELKEIAVRAARKLGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V ++ A E+A R+RGTPRIA RLL+R RDFA+V +TRE+ D L RL +D G D Sbjct: 204 PVDEDGAEELARRARGTPRIAIRLLQRARDFAQVEGDGRLTREVVDRTLRRLEVDARGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L + FGGGPVGI+ ++A + E +ED+ EP+++++G++ RTPRGR+ +P Sbjct: 264 AMDRRILAAVIDTFGGGPVGIDAVAAAVGEESGTLEDVYEPFLVREGYLARTPRGRVALP 323 Query: 322 IAWQHLGIDIP 332 A+ HLG D P Sbjct: 324 AAYAHLGRDRP 334 >gi|320333569|ref|YP_004170280.1| Holliday junction ATP-dependent DNA helicase ruvB [Deinococcus maricopensis DSM 21211] gi|319754858|gb|ADV66615.1| Holliday junction ATP-dependent DNA helicase ruvB [Deinococcus maricopensis DSM 21211] Length = 334 Score = 336 bits (861), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 168/310 (54%), Positives = 223/310 (71%), Gaps = 1/310 (0%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ LE++ GQ L V+++AAKAR EALDH L GPPGLGKTTL+ ++A ELGVN Sbjct: 13 RPKRLEDYVGQARLKEKLSVYLQAAKARREALDHTLLFGPPGLGKTTLSHIIAYELGVNI 72 Query: 83 RSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL + EE LYPAMEDF+LD+++G+G Sbjct: 73 KVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKLDIVLGQG 132 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR++++ L RFTL+ ATTR GL+T P++ RFGI L +Y E++ + R A L Sbjct: 133 PAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTPEEIALGLMRDATTLDL 192 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA E+ RSRGT RIA RLLRRVRD+AEVA + IT+E A+ AL +L +D G D Sbjct: 193 GLELDAAMEVGARSRGTMRIAKRLLRRVRDYAEVAGERRITKERAEDALDKLGLDTAGLD 252 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D +YL + F GGPVG++T++ +SE +ED+ EPY+IQ GFI+RTPRGR+ Sbjct: 253 DRDKKYLETLIHRFDGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRTPRGRVATA 312 Query: 322 IAWQHLGIDI 331 A+ HLG+D+ Sbjct: 313 AAYDHLGLDV 322 >gi|153874903|ref|ZP_02002938.1| Holliday junction ATP-dependent DNA helicase ruvB [Beggiatoa sp. PS] gi|152068634|gb|EDN67063.1| Holliday junction ATP-dependent DNA helicase ruvB [Beggiatoa sp. PS] Length = 289 Score = 336 bits (861), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 166/272 (61%), Positives = 205/272 (75%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 + GPPGLGKTTL+ +VA E+ VN R TSGPV+ +AGDLAALLTNLE RDVLFIDEIHRL Sbjct: 1 MIFGPPGLGKTTLSHIVANEMEVNIRQTSGPVLERAGDLAALLTNLEARDVLFIDEIHRL 60 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 S +VEE+LYPAMEDFQLD+M+GEGPSARS+K++L FTLI ATTR GLLT+PL+DRFGI Sbjct: 61 SPVVEEMLYPAMEDFQLDIMIGEGPSARSIKLDLPPFTLIGATTRAGLLTSPLRDRFGIT 120 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 RL FY EDL I+ R A + +++ E A E+A RSRGTPRIA RLLRRVRD+A+V Sbjct: 121 QRLEFYSHEDLAKIITRSASILNVSIDTEGAMELACRSRGTPRIANRLLRRVRDYAQVRA 180 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 IT EIA AL L +D G D +D + L I F GGPVG+ET++A + E R IE Sbjct: 181 DGQITCEIAKKALDLLNVDTYGLDIMDRKLLLAIMEKFDGGPVGVETLAAIVGEERGTIE 240 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 ++IEP+++QQG + RTPRGR+ +AWQH + Sbjct: 241 EVIEPFLLQQGLLMRTPRGRVATRLAWQHFNL 272 >gi|262041977|ref|ZP_06015159.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040675|gb|EEW41764.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 304 Score = 336 bits (861), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 172/285 (60%), Positives = 215/285 (75%), Gaps = 1/285 (0%) Query: 1 MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + S E+A +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLVSADSSGFEEAADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+G N R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGGNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY+I DL+ IV R A+ GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQIPDLQHIVSRSARHMGLEMSDEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284 TI+ +IA AL L +D GFD +D + L + F GGPVG T Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGWTT 285 >gi|224418229|ref|ZP_03656235.1| Holliday junction DNA helicase RuvB [Helicobacter canadensis MIT 98-5491] gi|313141762|ref|ZP_07803955.1| holliday junction DNA helicase [Helicobacter canadensis MIT 98-5491] gi|313130793|gb|EFR48410.1| holliday junction DNA helicase [Helicobacter canadensis MIT 98-5491] Length = 333 Score = 336 bits (861), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 164/297 (55%), Positives = 222/297 (74%), Gaps = 1/297 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +++ GQ + NLKVFIEAAK R + LDH+L GPPGLGKTTLA +++ E+ Sbjct: 20 LRPSDWDDYIGQEKLKRNLKVFIEAAKKRGDVLDHLLLFGPPGLGKTTLAHIISGEMNAP 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I KAGDLAA+LTNL + ++LFIDEIHRLS +EEILYPAMEDF+LD+++G G Sbjct: 80 IKVTAAPMIEKAGDLAAILTNLSEGEILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A++VKI+L RFTLI ATTR G+++NPL+DRFG+ R+ FYE E+L IVQ + Sbjct: 140 PAAQTVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQFYEKEELARIVQIASIKLQK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++E A EIA RSRGTPRIA RLL+RVRDFAEVA + IT+E AL L +++ GFD Sbjct: 200 ECSNEGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEEIITKERTQYALNELGVNEYGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318 +LDLR+L +I + G P+G+ T++A +SE +ED+IEPY++ GF++RT RGR+ Sbjct: 260 ELDLRFLKIICES-RGRPIGLSTLAAAMSEDEGTVEDVIEPYLLVNGFLERTARGRI 315 >gi|253827554|ref|ZP_04870439.1| Holliday junction DNA helicase RuvB [Helicobacter canadensis MIT 98-5491] gi|253510960|gb|EES89619.1| Holliday junction DNA helicase RuvB [Helicobacter canadensis MIT 98-5491] Length = 324 Score = 335 bits (860), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 164/297 (55%), Positives = 222/297 (74%), Gaps = 1/297 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +++ GQ + NLKVFIEAAK R + LDH+L GPPGLGKTTLA +++ E+ Sbjct: 11 LRPSDWDDYIGQEKLKRNLKVFIEAAKKRGDVLDHLLLFGPPGLGKTTLAHIISGEMNAP 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I KAGDLAA+LTNL + ++LFIDEIHRLS +EEILYPAMEDF+LD+++G G Sbjct: 71 IKVTAAPMIEKAGDLAAILTNLSEGEILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A++VKI+L RFTLI ATTR G+++NPL+DRFG+ R+ FYE E+L IVQ + Sbjct: 131 PAAQTVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQFYEKEELARIVQIASIKLQK 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++E A EIA RSRGTPRIA RLL+RVRDFAEVA + IT+E AL L +++ GFD Sbjct: 191 ECSNEGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEEIITKERTQYALNELGVNEYGFD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318 +LDLR+L +I + G P+G+ T++A +SE +ED+IEPY++ GF++RT RGR+ Sbjct: 251 ELDLRFLKIICES-RGRPIGLSTLAAAMSEDEGTVEDVIEPYLLVNGFLERTARGRI 306 >gi|290579578|ref|YP_003483970.1| Holliday junction DNA helicase [Streptococcus mutans NN2025] gi|254996477|dbj|BAH87078.1| Holliday junction DNA helicase [Streptococcus mutans NN2025] Length = 331 Score = 335 bits (860), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 166/307 (54%), Positives = 219/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + LK+FI+AAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLQEYIGQDKVKDQLKIFIKAAKQRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYTDIDLTEIVERTADIFEM 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T +AA E+A RSRGTPRIA RLL+RVRD+A++ I +I D AL L +D G D Sbjct: 200 TITHQAALELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDKITDKALTMLDVDHEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 260 YVDQKILKTMIEMYHGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIIRTRSGRVATA 319 Query: 322 IAWQHLG 328 A++HLG Sbjct: 320 KAYEHLG 326 >gi|118586982|ref|ZP_01544414.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163] gi|118432604|gb|EAV39338.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163] Length = 338 Score = 335 bits (860), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 160/308 (51%), Positives = 214/308 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ E L V+++AAK R EALDHVL GPPGLGKTTLA V+A E+G Sbjct: 24 LRPKYLREYIGQKEIKDQLSVYLKAAKQRDEALDHVLLFGPPGLGKTTLAIVIANEMGAK 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I K GDL ALL L D+LFIDEIHRL VEE+LY AMEDF +D++VG+G Sbjct: 84 IKTTSGPAIEKTGDLVALLNELTAGDILFIDEIHRLPKSVEEVLYSAMEDFYVDIVVGQG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +A ++ L FTLI ATTR G+L+ PL+DRFGI + FY + DLK I +R A++ Sbjct: 144 ETAHAIHFPLPPFTLIGATTRAGMLSAPLRDRFGIVAHMQFYPVSDLKLIAKRTAEIFDT 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ A E+A+RSRGTPRI RLL+RVRDFA+VA TI +I D+AL +L +D G D Sbjct: 204 SIAGSGAAELALRSRGTPRIVNRLLKRVRDFAQVAGKDTIDEQIVDSALNKLHVDARGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL+YL + + GGP G+ +++ + E + +E+++EPY++Q GFIQRTPRGR Sbjct: 264 ETDLKYLNTLIHQYKGGPAGVNALASNIGEDSETVEEMVEPYLLQIGFIQRTPRGRQATQ 323 Query: 322 IAWQHLGI 329 A++HL I Sbjct: 324 AAYEHLQI 331 >gi|326803734|ref|YP_004321552.1| Holliday junction DNA helicase RuvB [Aerococcus urinae ACS-120-V-Col10a] gi|326650029|gb|AEA00212.1| Holliday junction DNA helicase RuvB [Aerococcus urinae ACS-120-V-Col10a] Length = 345 Score = 335 bits (860), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 167/310 (53%), Positives = 222/310 (71%), Gaps = 1/310 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+++ GQ E L V+I AA+ R E+LDHVL GPPGLGKTTLA V++ E+ VN Sbjct: 23 LRPQLLKDYIGQEETKHELSVYIHAARQRTESLDHVLLYGPPGLGKTTLANVISNEMQVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +++SGP I K GDL LL L DVLFIDEIH L VEE+LY AMEDF++D++VG+ Sbjct: 83 MQTSSGPAIEKTGDLLILLNELAPGDVLFIDEIHCLPRNVEEMLYSAMEDFRVDIIVGQE 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SA +V+ +L FTL+ ATTR G L+ PL+DRFGI + +Y++++L+ IV+R +++ + Sbjct: 143 SSAHAVQFDLPPFTLVGATTRAGSLSAPLRDRFGIIQHMRYYKVDELQEIVKRSSQIFEV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR-EIADAALLRLAIDKMGF 260 + DEA+ EIA+RSRGTPRIA RLL+RVRDFA++ + I I + AL L IDK G Sbjct: 203 TIEDEASYEIALRSRGTPRIANRLLKRVRDFAQIYNTNAIIDLAITERALSILKIDKAGL 262 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D LD R L I + GGPVG+ TI+A LSE ++ IED+ EPY+IQ GF+QRTPRGR+ Sbjct: 263 DDLDRRILETIIFYYQGGPVGLSTIAANLSEEKETIEDMYEPYLIQMGFLQRTPRGRMAT 322 Query: 321 PIAWQHLGID 330 A+QHLGID Sbjct: 323 AKAYQHLGID 332 >gi|312131534|ref|YP_003998874.1| holliday junction DNA helicase ruvb [Leadbetterella byssophila DSM 17132] gi|311908080|gb|ADQ18521.1| Holliday junction DNA helicase RuvB [Leadbetterella byssophila DSM 17132] Length = 339 Score = 335 bits (860), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 170/313 (54%), Positives = 222/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + ++F GQ + NLKVF+ AAK R+EALDHVL GPPGLGKTTL+ ++A ELG N Sbjct: 22 LRPLSFDDFAGQDKILENLKVFVLAAKMRSEALDHVLLHGPPGLGKTTLSHIIANELGAN 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ K DLA LLT+LE DVLFIDEIHRL+ IVEE LY AMED+++D+M+ G Sbjct: 82 LKITSGPVLDKPSDLAGLLTSLEQNDVLFIDEIHRLNPIVEEYLYSAMEDYKIDIMLDSG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+I L+ FTLI ATTR GLLT+PL+ RFGI RL +Y+ + L I+ R A + Sbjct: 142 PNARSVQIGLNPFTLIGATTRSGLLTSPLRARFGINSRLEYYDAQLLSKILVRSASILQT 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A EIA RSRGTPRIA LLRR RDFA+V IT EIA AL L +D+ G D Sbjct: 202 PIDEDGAYEIARRSRGTPRIANNLLRRTRDFAQVKGEGVITVEIAKMALAALDVDQDGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L+ I F GGPVG+ TI+ + E + IE++ EP++IQ+GF++RT RGR Sbjct: 262 EMDNRILSTIIEKFKGGPVGLGTIATAVGEEAETIEEVYEPFLIQEGFLKRTARGREATE 321 Query: 322 IAWQHLGIDIPHR 334 A++HL + +R Sbjct: 322 KAYKHLNLVPKYR 334 >gi|254457038|ref|ZP_05070466.1| Holliday junction DNA helicase RuvB [Campylobacterales bacterium GD 1] gi|207085830|gb|EDZ63114.1| Holliday junction DNA helicase RuvB [Campylobacterales bacterium GD 1] Length = 337 Score = 335 bits (859), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 173/325 (53%), Positives = 232/325 (71%), Gaps = 6/325 (1%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 + +E A+++L RP E+ GQ + NL VFIEA+K R EALDHVLF GPPGLGKTTL Sbjct: 11 STEEESAEVTL-RPDAWGEYIGQEQIKKNLGVFIEASKKRDEALDHVLFYGPPGLGKTTL 69 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+ N + T+ P+I K+GDLAA+LTNLE+ D+LFIDEIHRLS VEEILY +ME Sbjct: 70 ALIIANEMSANIKVTAAPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEILYSSME 129 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-K 189 DF++D+++G GP+A++VKI+L RFTLI ATTR G+L+NPL+DRFG+ R+ FY ++L K Sbjct: 130 DFRIDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSSDELAK 189 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IVQ KL + EA+ EIA RSRGTPRIA RLLRRVRDFAEVA +I A Sbjct: 190 IIVQASVKLDK-EIIHEASVEIAKRSRGTPRIALRLLRRVRDFAEVAEEMSINHSRTQYA 248 Query: 250 LLRLAIDKMGFDQLDLRYLT-MIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 L +L I+ GFD++D+R L ++A N G +G+ TI+A LSE +ED++EPY+I G Sbjct: 249 LDQLGINSHGFDEMDIRLLNLLVAAN--GRAMGLSTIAAALSEDEGTVEDVLEPYLIANG 306 Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333 +++RT +GR ++ L I + H Sbjct: 307 YLERTAKGRKATRSTYEVLNISMTH 331 >gi|116490642|ref|YP_810186.1| Holliday junction DNA helicase B [Oenococcus oeni PSU-1] gi|290890056|ref|ZP_06553139.1| hypothetical protein AWRIB429_0529 [Oenococcus oeni AWRIB429] gi|122277174|sp|Q04GA1|RUVB_OENOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116091367|gb|ABJ56521.1| Holliday junction DNA helicase subunit RuvB [Oenococcus oeni PSU-1] gi|290480247|gb|EFD88888.1| hypothetical protein AWRIB429_0529 [Oenococcus oeni AWRIB429] Length = 338 Score = 335 bits (859), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 164/328 (50%), Positives = 227/328 (69%), Gaps = 2/328 (0%) Query: 3 DREGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 D++ L ++ ++ E D++++L RP+ L E+ GQ E L V+++AAK R EALDHVL G Sbjct: 5 DQKILDAKPIADEIDSELTL-RPKYLREYIGQKEIKDQLSVYLKAAKQRDEALDHVLLFG 63 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA V+A E+G ++TSGP I K GDL ALL L D+LFIDEIHRL V Sbjct: 64 PPGLGKTTLAIVIANEMGAKIKTTSGPAIEKTGDLVALLNELTAGDILFIDEIHRLPKSV 123 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF +D++VG+G +A ++ L FTLI ATTR G+L+ PL+DRFGI + Sbjct: 124 EEVLYSAMEDFYVDIVVGQGETAHAIHFPLPPFTLIGATTRAGMLSAPLRDRFGIVAHMQ 183 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY + DLK I +R A++ ++ A E+A+RSRGTPRI RLL+RVRDFA+VA TI Sbjct: 184 FYPVSDLKLIAKRTAEIFDTSIAGSGAAELALRSRGTPRIVNRLLKRVRDFAQVAGKDTI 243 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 +I D AL +L +D G D+ DL+YL + + GGP G+ +++ + E + +E+++E Sbjct: 244 DEQIVDNALNKLHVDARGLDETDLKYLNTLIHQYKGGPAGVNALASNIGEDSETVEEMVE 303 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 PY++Q GFIQRTPRGR A++HL I Sbjct: 304 PYLLQIGFIQRTPRGRQATQAAYEHLQI 331 >gi|320528323|ref|ZP_08029485.1| Holliday junction DNA helicase RuvB [Solobacterium moorei F0204] gi|320131237|gb|EFW23805.1| Holliday junction DNA helicase RuvB [Solobacterium moorei F0204] Length = 337 Score = 335 bits (859), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 174/331 (52%), Positives = 231/331 (69%), Gaps = 3/331 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M + + LLS N D + SL RP+TL+E+ GQ N++++I+AA R E+LDHVL Sbjct: 1 MEESDRLLSANAEMGDDEESL-RPQTLDEYIGQDTLKENIRIYIQAALQRNESLDHVLLY 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ ++A E+ R SGP I KAGDLAA+L+ LE DVLFIDEIHRL Sbjct: 60 GPPGLGKTTLSFILANEMHSKVRVASGPSITKAGDLAAILSVLEPGDVLFIDEIHRLPKQ 119 Query: 121 VEEILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 VEE+LYPAMEDF+LD+M+G G RSV+++L FTL+ ATTR G L+ PL+DRFGI Sbjct: 120 VEEVLYPAMEDFELDIMIGGENGAGGRSVRLDLPPFTLVGATTRAGDLSAPLRDRFGIVA 179 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 +L +Y E L +IV R A++ + A EIA RSRGTPRIA RLLRR+RDFA+V + Sbjct: 180 KLEYYNQEQLCSIVSRTARVLNAPIHTAAVDEIARRSRGTPRIANRLLRRIRDFAQVLND 239 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 I++EIA AL RL +D +G D++D+RYL I F GGPVG+E+++ +SE +ED Sbjct: 240 GHISKEIAQTALDRLKVDSLGLDEVDIRYLRGIIERFHGGPVGLESLANAISEETTTLED 299 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 + EPY+IQ GF+ RT RGR++ A++HL I Sbjct: 300 VYEPYLIQIGFVNRTSRGRVVTEKAYEHLHI 330 >gi|24378590|ref|NP_720545.1| Holliday junction DNA helicase RuvB [Streptococcus mutans UA159] gi|44888489|sp|Q8DWI4|RUVB_STRMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|24376443|gb|AAN57851.1|AE014858_3 Holliday junction DNA helicase RuvB [Streptococcus mutans UA159] Length = 344 Score = 335 bits (859), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 166/307 (54%), Positives = 219/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ + LK+FI+AAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 33 LRPQYLQEYIGQDKVKDQLKIFIKAAKQRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 92 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP I KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 93 LKQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAG 152 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RSV ++L FTLI ATTR G+L+NPL+ RFGI + +Y DL IV+R A + + Sbjct: 153 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYTDIDLTEIVERTADIFEM 212 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T +AA E+A RSRGTPRIA RLL+RVRD+A++ I +I D AL L +D G D Sbjct: 213 TITHQAALELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDKITDKALTMLDVDHEGLD 272 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI RT GR+ Sbjct: 273 YVDQKILKTMIEMYHGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIIRTRSGRVATA 332 Query: 322 IAWQHLG 328 A++HLG Sbjct: 333 KAYEHLG 339 >gi|257870593|ref|ZP_05650246.1| holliday junction DNA helicase RuvB [Enterococcus gallinarum EG2] gi|257804757|gb|EEV33579.1| holliday junction DNA helicase RuvB [Enterococcus gallinarum EG2] Length = 336 Score = 335 bits (858), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 163/309 (52%), Positives = 216/309 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ + L ++I+AAK R EALDHVL GPPGLGKTT+A V+A E+ VN Sbjct: 22 LRPQFLAQYIGQNKVKEELSIYIQAAKNREEALDHVLLYGPPGLGKTTMAMVIANEMAVN 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I K GDL A+L L+ DVLFIDEIHRL + EE+LY AMEDF +D+MVG+G Sbjct: 82 IKTTSGPAIEKPGDLIAILNELQPGDVLFIDEIHRLPRVAEEMLYSAMEDFFVDIMVGQG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +A V L FTL+ ATTR G+L+ PL+DRFGI + +YE +DLK IV R A + Sbjct: 142 TTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMEYYEDQDLKEIVLRSADIFQT 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E A EIA RSRGTPRIA RLL+RVRDFA+V I R+IAD ALL L +D G D Sbjct: 202 EIVEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQANGIIDRQIADKALLLLQVDHAGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + + +GGGPVG+ T+S + E + +ED+ EPY+IQ+GF++RTPRGR+ Sbjct: 262 YVDQKLIRTMIELYGGGPVGLSTLSVNIGEETETVEDMYEPYLIQRGFLKRTPRGRIATT 321 Query: 322 IAWQHLGID 330 +A+ H G + Sbjct: 322 LAYTHFGYE 330 >gi|237750468|ref|ZP_04580948.1| holliday junction DNA helicase B [Helicobacter bilis ATCC 43879] gi|229373998|gb|EEO24389.1| holliday junction DNA helicase B [Helicobacter bilis ATCC 43879] Length = 347 Score = 335 bits (858), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 158/303 (52%), Positives = 223/303 (73%), Gaps = 1/303 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + E + GQ + NL+VFIEA+K R E LDH+LF GPPGLGKTT++ ++A E+G N Sbjct: 31 LRPISWENYIGQDKIKKNLQVFIEASKKRNECLDHILFFGPPGLGKTTISHIIAHEMGAN 90 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + ++ P+I KAGDLAA++TNL D+LFIDEIHRLS +EEILYPAMEDF+LD+++G+G Sbjct: 91 IKVSAAPMIEKAGDLAAIMTNLSHGDILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGQG 150 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +A+++KI+L+ FTLI ATTR G+L+NPL+DRFGI +L FY ++L I+ + + Sbjct: 151 AAAQTIKIDLAPFTLIGATTRAGMLSNPLRDRFGISAKLEFYNEDELALIITKASLKLNT 210 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + +A EIA RSRGTPRIA RLL+RVRDFAEV I IA AL L ++++GFD Sbjct: 211 KINEMSAKEIAKRSRGTPRIALRLLKRVRDFAEVQDKNMIDEVIAKHALNELGVNELGFD 270 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++DL YL ++++ G P+G+ TI+A +SE IED+IEPY++ G+I+RT +GR+ P Sbjct: 271 EMDLGYLKILSQ-ANGRPIGLNTIAAAMSEDEGTIEDVIEPYLLANGYIERTAKGRIATP 329 Query: 322 IAW 324 + Sbjct: 330 KTY 332 >gi|288574885|ref|ZP_06393242.1| Holliday junction DNA helicase RuvB [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570626|gb|EFC92183.1| Holliday junction DNA helicase RuvB [Dethiosulfovibrio peptidovorans DSM 11002] Length = 344 Score = 335 bits (858), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 167/318 (52%), Positives = 231/318 (72%), Gaps = 1/318 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +VS++D D+SL RP +LE+FTGQ + L ++++AA+ R E LDH LF GPPGLGKTTL Sbjct: 10 DVSEKDDDLSL-RPLSLEDFTGQESIKNKLGIYVKAARQRGEPLDHSLFYGPPGLGKTTL 68 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++ARE+G + R T+GP + K GDLAA+L+NL+D DVLFIDEIHR++ +EE+LY AME Sbjct: 69 AGIIAREMGGDLRITTGPALEKTGDLAAILSNLQDNDVLFIDEIHRMNSSIEEVLYSAME 128 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF L ++VG+GP AR++ ++L +FTL+ ATTR+GLLT+PL+ RFGI +L+ Y E+L + Sbjct: 129 DFSLHIIVGKGPLARNICLSLPKFTLVGATTRLGLLTSPLRARFGIVEQLSLYSTEELAS 188 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 I+ RGA + +++ EAA IA RSRGTPRIA R+LRRVRD AEVA IT IA+ A+ Sbjct: 189 IISRGAGVLNVSIEGEAALLIAGRSRGTPRIALRILRRVRDVAEVAGDGVITPAIAERAM 248 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L +D G D D R L + F GGPVG+ T++A L+E +ED+ EPY++Q G + Sbjct: 249 SMLGLDGFGLDDGDRRILEALVDLFSGGPVGLSTVAASLNEESQTVEDIYEPYLLQLGLL 308 Query: 311 QRTPRGRLLMPIAWQHLG 328 +RTPRGR +++LG Sbjct: 309 ERTPRGRKATARTYEYLG 326 >gi|320537238|ref|ZP_08037200.1| Holliday junction DNA helicase RuvB [Treponema phagedenis F0421] gi|320145913|gb|EFW37567.1| Holliday junction DNA helicase RuvB [Treponema phagedenis F0421] Length = 342 Score = 335 bits (858), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 162/333 (48%), Positives = 223/333 (66%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M+ G + + D LRPR L +F GQ + NL VFI+AA+ R+E+LDH+ +G Sbjct: 3 MEEFGTVHPELQSGDDKDPALRPRLLRDFQGQEKIKQNLHVFIQAARERSESLDHLFLIG 62 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLAQ+ A ELGV F+ T P + K DLA +LT L +R V FIDEIHRL + Sbjct: 63 PPGLGKTTLAQITANELGVEFKVTGAPALDKPKDLAGILTTLTERSVFFIDEIHRLKPAI 122 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMED++LD ++G+GP AR+V+I + FTL+ ATTR G++++PL RFGI R Sbjct: 123 EEMLYIAMEDYELDWIIGQGPGARTVRIPIPPFTLVGATTRAGMVSSPLISRFGIVQRFE 182 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY E+L +I++R AK+ + + AA +A RGTPR+A RLLRR+RDFA+VA ++ Sbjct: 183 FYTDEELASIIERSAKILQIRIEPSAALTLAKSCRGTPRVANRLLRRMRDFAQVAGKSSV 242 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T E+ L RL ID +G + D + L I N+GGGPVG ET++ + E +D +ED E Sbjct: 243 TEEVIAVGLKRLNIDSLGLENHDRQILRSIIENYGGGPVGAETLAISIGESQDTLEDYYE 302 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 PY+IQ G IQRTPRGR++ +HLG+ +P + Sbjct: 303 PYLIQSGLIQRTPRGRMITEKGCRHLGMSVPEQ 335 >gi|291295268|ref|YP_003506666.1| Holliday junction DNA helicase RuvB [Meiothermus ruber DSM 1279] gi|290470227|gb|ADD27646.1| Holliday junction DNA helicase RuvB [Meiothermus ruber DSM 1279] Length = 329 Score = 334 bits (857), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 174/320 (54%), Positives = 228/320 (71%), Gaps = 2/320 (0%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 +AD++L RP+ L+++ GQ + L+V++EAAK R EALDH+L GPPGLGKTTLA VVA Sbjct: 6 EADLTL-RPKRLDDYVGQAKLKKKLRVYLEAAKNRGEALDHLLLFGPPGLGKTTLAHVVA 64 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ELGVN R TSGP I K GDLAA+LTN LE+ D+LFIDEIHRLS EE LYPA+EDF++ Sbjct: 65 YELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDILFIDEIHRLSKAAEEHLYPALEDFKI 124 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+++G GP+AR+++++L RFTLI ATTR GL++ PL+ RFGI L FY +L V R Sbjct: 125 DIVIGAGPAARTLRLDLPRFTLIGATTRPGLISGPLRSRFGIIEHLEFYTETELAQGVTR 184 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A+L GLA+ EAA EI RSRGT RIA RL RRVRDFAEVA + + E A AL L Sbjct: 185 DAQLMGLAIEPEAALEIGRRSRGTMRIAKRLFRRVRDFAEVAGEQVVGLERARQALDALG 244 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D D + + + F GGPVG+ET++ LSE + +E++ EP++IQ G ++RTP Sbjct: 245 LDALGLDARDRQIIQTVIERFAGGPVGLETLATALSEDPETLEEVHEPFLIQLGLLKRTP 304 Query: 315 RGRLLMPIAWQHLGIDIPHR 334 RGR A+ HLG +P + Sbjct: 305 RGRQATERAYAHLGYPLPEQ 324 >gi|148927931|ref|ZP_01811337.1| Holliday junction DNA helicase RuvB [candidate division TM7 genomosp. GTL1] gi|147886720|gb|EDK72284.1| Holliday junction DNA helicase RuvB [candidate division TM7 genomosp. GTL1] Length = 343 Score = 334 bits (857), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 165/307 (53%), Positives = 218/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR +E+ GQ + L++ I AAK R E +DHVL GPPGLGKTT+A V+A E+G N Sbjct: 25 LRPRRFDEYIGQDRLKATLRLAITAAKKRGEPIDHVLLYGPPGLGKTTMATVIANEMGAN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R T+GP I +AGDLA++LTNL + DVLFIDEIHRLS VEE+LY AMEDF+LD+++G+G Sbjct: 85 IRVTAGPAIERAGDLASILTNLAEGDVLFIDEIHRLSRAVEEVLYGAMEDFKLDIVIGKG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+++L +FTLI ATTR G L PL+DRFG+ RL FY+ ++K I++R A + G Sbjct: 145 PAARSVRLDLPKFTLIGATTRTGALAAPLRDRFGLLHRLEFYQPHEVKQIIERAADILGA 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA +A R+R TPR+A RLL+RVRD+A+V I + AL L ID++G D Sbjct: 205 TIHSKAAANLATRARLTPRVANRLLKRVRDYADVNGDGIIDEATSHKALNLLEIDELGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D L I N+ GGPVG+ET++A + R IED EPY++Q GF++RTPRGR L P Sbjct: 265 AADRSLLKAIVENYKGGPVGVETLAALTGDERSTIEDFYEPYLLQIGFLERTPRGRKLTP 324 Query: 322 IAWQHLG 328 A QHLG Sbjct: 325 RALQHLG 331 >gi|86157380|ref|YP_464165.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter dehalogenans 2CP-C] gi|97189892|sp|Q2IPJ5|RUVB_ANADE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|85773891|gb|ABC80728.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter dehalogenans 2CP-C] Length = 342 Score = 334 bits (857), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 163/309 (52%), Positives = 219/309 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP T +++ GQV+ N+KV+ AA+ R E+LDHVL GPPGLGKT+LA ++ARELGV Sbjct: 24 LRPATFDDYVGQVKIVDNVKVYAAAARQRGESLDHVLLSGPPGLGKTSLAHILARELGVT 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGP + K GDLA LLT L RD+LFIDEIHRLS VEE LYPAMED++ D+++G G Sbjct: 84 LHVTSGPALVKKGDLAGLLTALAPRDILFIDEIHRLSPAVEEALYPAMEDYRFDVVLGAG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A+++++ L RFTL+ ATTR GLL +PL+DRF I RL +Y +LK I R A+ GL Sbjct: 144 LGAQTMEMKLERFTLVGATTRTGLLASPLRDRFPIQERLEYYGPAELKEIAVRAARKLGL 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V ++ A E+A R+RGTPRIA RLL+R RDFA+V +TRE+ D L RL +D G D Sbjct: 204 PVDEDGAEELARRARGTPRIAIRLLQRARDFAQVEGDGRLTREVVDRTLRRLEVDARGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L + FGGGPVGI+ ++A + E +ED+ EP+++++G++ RTPRGR+ +P Sbjct: 264 AMDRRILAAVIDTFGGGPVGIDAVAAAVGEESGTLEDVYEPFLVREGYLARTPRGRVALP 323 Query: 322 IAWQHLGID 330 A+ HLG D Sbjct: 324 AAYAHLGRD 332 >gi|157165204|ref|YP_001467229.1| Holliday junction DNA helicase B [Campylobacter concisus 13826] gi|166231475|sp|A7ZEM1|RUVB_CAMC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|112801915|gb|EAT99259.1| holliday junction DNA helicase RuvB [Campylobacter concisus 13826] Length = 336 Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 169/332 (50%), Positives = 232/332 (69%), Gaps = 6/332 (1%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MDR + + + D ++SL RP E++ GQ + NL VFI+AAK R E LDHVLF G Sbjct: 1 MDRIVEIEKVSFENDFEVSL-RPSKFEDYIGQEKIKQNLDVFIKAAKKRNECLDHVLFYG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+GV+ + T+ P+I K+GDLAA+LTNL++ DVLFIDEIHRLS + Sbjct: 60 PPGLGKTTLAHIIANEMGVSIKMTAAPMIEKSGDLAAILTNLQEGDVLFIDEIHRLSPAI 119 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+++ PL+DRFG+ RL Sbjct: 120 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMISAPLRDRFGMDFRLQ 179 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY +L IVQ + G A+ EIA RSR TPRIA RLL+R+RDFAEV + I Sbjct: 180 FYTSSELSRIVQIASAKLGKECDKNASLEIAKRSRATPRIALRLLKRIRDFAEVNDEQII 239 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLT--MIARNFGGGPVGIETISAGLSEPRDAIEDL 299 + E A L L ++ +GFD++D+RYL M AR P+G+ TI+A LSE +ED+ Sbjct: 240 SHERAKEGLNALGVNSLGFDEMDIRYLEILMQARR---RPMGLSTIAAALSEDEGTVEDV 296 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331 IEPY++ GFI+RT +GR+ ++ + I Sbjct: 297 IEPYLLANGFIERTAKGRIASAKCFETFNVKI 328 >gi|158337867|ref|YP_001519043.1| Holliday junction DNA helicase RuvB [Acaryochloris marina MBIC11017] gi|189045778|sp|B0C2D5|RUVB_ACAM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|158308108|gb|ABW29725.1| holliday junction DNA helicase RuvB [Acaryochloris marina MBIC11017] Length = 375 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 164/311 (52%), Positives = 216/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ +E+ GQ E L + I+A K+R EALDH+L GPPGLGKTT++ ++A ELGVN Sbjct: 57 LRPQRFDEYIGQRELKEVLDIAIQATKSRQEALDHLLLYGPPGLGKTTISLILAAELGVN 116 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P + + D+ LL NL+ RD+LFIDEIHRLS + EE+LYPAMEDF+LD+ +G+G Sbjct: 117 CKVTSAPALERPRDIVGLLVNLQPRDILFIDEIHRLSRMTEELLYPAMEDFRLDITIGKG 176 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SAR + L FTL+ ATTRVG LT+PL+DRFG RL FYE ++L IV R A + Sbjct: 177 QSARIRSLPLKPFTLVGATTRVGALTSPLRDRFGFVQRLRFYEADELGQIVLRTADILKA 236 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T +AA E+A RSRGTPRIA RLL+RVRD+AEV H+ IT+ IA AL +D G D Sbjct: 237 KITSDAAEEVARRSRGTPRIANRLLKRVRDYAEVKHSGEITQTIAQEALELFNVDPCGLD 296 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R LT++ + GGPVG++T++A E IE++ EPY++Q G++ RTPRGR+ P Sbjct: 297 WTDRRLLTVMIEQYNGGPVGVDTLAAATGEDSQTIEEVYEPYLMQIGYLNRTPRGRVATP 356 Query: 322 IAWQHLGIDIP 332 AW HLG P Sbjct: 357 AAWTHLGYQPP 367 >gi|296170844|ref|ZP_06852405.1| crossover junction ATP-dependent DNA helicase RuvB [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894500|gb|EFG74241.1| crossover junction ATP-dependent DNA helicase RuvB [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 347 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 170/335 (50%), Positives = 232/335 (69%), Gaps = 4/335 (1%) Query: 1 MMD---REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 MMD RE + V + D D+SL RPR+L EF GQ L++ IE AK R DH+ Sbjct: 1 MMDDAERELSPALAVGEGDIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHI 59 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR+ Sbjct: 60 LLSGPPGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRI 119 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 + EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG Sbjct: 120 ARPAEEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFT 179 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 ++FYE +L+ ++ R A + G+ + EAA EIA RSRGTPRIA RLLRRVRDFAEV Sbjct: 180 AHMDFYEPAELELVLARSAGILGIELGAEAAEEIARRSRGTPRIANRLLRRVRDFAEVRA 239 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 ITR++A +AL +D++G D+LD LT + R+FGGGPVG+ T++ + E +E Sbjct: 240 DGVITRDVAKSALAVYDVDELGLDRLDRAVLTALTRSFGGGPVGVSTLAVAVGEEATTVE 299 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++ EP++++ G + RTPRGR+ AW HLG+ P Sbjct: 300 EVCEPFLVRAGMVARTPRGRVATAQAWTHLGMSPP 334 >gi|300934558|ref|ZP_07149814.1| Holliday junction DNA helicase RuvB [Corynebacterium resistens DSM 45100] Length = 362 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 162/319 (50%), Positives = 226/319 (70%), Gaps = 1/319 (0%) Query: 16 DADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 D+D+ S LRP++L EF GQ + + L + + A+ R DHVL GPPGLGKTT+A ++ Sbjct: 39 DSDVESSLRPKSLSEFIGQPKVRTQLDLVLGGARTRGVVPDHVLLAGPPGLGKTTMAMII 98 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF++ Sbjct: 99 AQELGSSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFRI 158 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A S+ I ++ FTL+ ATTR G+LT PL+DRFG ++ FY++EDL +V R Sbjct: 159 DVIVGKGPGATSIPIEVAPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDVEDLTRVVTR 218 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ V +AA EIA RSRGTPRIA RLLRRVRDFA+V +T E+A AALL Sbjct: 219 AAGILGVHVDSDAASEIASRSRGTPRIANRLLRRVRDFADVNADGRVTLEVAKAALLVFD 278 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D+ G D+LD L + R GGGPVG+ T++ + E +E++ EPY+++ G + RTP Sbjct: 279 VDESGLDRLDRAVLDALVRGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVRAGMLARTP 338 Query: 315 RGRLLMPIAWQHLGIDIPH 333 RGR+ AW+H+G++ P Sbjct: 339 RGRVATAAAWRHVGLEPPE 357 >gi|325283973|ref|YP_004256514.1| Holliday junction ATP-dependent DNA helicase ruvB [Deinococcus proteolyticus MRP] gi|324315782|gb|ADY26897.1| Holliday junction ATP-dependent DNA helicase ruvB [Deinococcus proteolyticus MRP] Length = 330 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 169/319 (52%), Positives = 226/319 (70%), Gaps = 1/319 (0%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 ++ +++ + LRPR+L E+ GQ + L V+++AA+ R EALDH L GPPGLGKTTLA Sbjct: 1 MTGTESNDAALRPRSLTEYVGQAKLKDKLGVYLQAARGRGEALDHTLLFGPPGLGKTTLA 60 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAME 130 ++A ELGVN R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL + EE LYPAME Sbjct: 61 HIIAYELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAME 120 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF+LD+++G+GP+AR++++ L RFTL+ ATTR GL+T P++ RFGI L +Y E++ Sbjct: 121 DFKLDIVLGQGPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTAEEIAQ 180 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 + R A+L G + + AA EI RSRGT RIA RLLRRVRDF EVA I+ E A AL Sbjct: 181 NLLRDARLLGFDLDEAAALEIGGRSRGTMRIAKRLLRRVRDFTEVAGEPCISLERAHDAL 240 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +L +D G D D +YL + F GGPVG++T++ +SE +ED+ EP++IQ GFI Sbjct: 241 DKLGLDSAGLDDRDKKYLETLIHRFAGGPVGLDTLATAISEDALTLEDVYEPFLIQLGFI 300 Query: 311 QRTPRGRLLMPIAWQHLGI 329 +RTPRGR+ A+ HLG+ Sbjct: 301 KRTPRGRVATAHAYDHLGL 319 >gi|332298113|ref|YP_004440035.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema brennaborense DSM 12168] gi|332181216|gb|AEE16904.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema brennaborense DSM 12168] Length = 339 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 165/329 (50%), Positives = 230/329 (69%), Gaps = 2/329 (0%) Query: 7 LLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +L NV +D + LRP+ L +F GQ NL VFIEAA+ R E+LDH+ +GPPGL Sbjct: 4 ILHANVPFDDDTQDTTLRPQLLRDFLGQTSVKENLSVFIEAARTRRESLDHLFLIGPPGL 63 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLAQ+ A ELG +F+ TS P + K DLA +L+ + +R V FIDEIHRL +EE+L Sbjct: 64 GKTTLAQITAHELGADFKVTSAPALDKPKDLAGILSTITERTVFFIDEIHRLKPAIEEML 123 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMED++LD ++G+G +AR+V+I + FTL+ ATT+ G++++PL RFGI R +FY+ Sbjct: 124 YIAMEDYELDWVIGQGAAARTVRIPVPHFTLVGATTKAGMVSSPLISRFGIVQRFSFYDA 183 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E+L +I++R A + + V D+AA +A +RGTPR+A R+LRR+RDFA+V TITR++ Sbjct: 184 EELASIIRRSAGILNVTVADDAARLMAECARGTPRVANRVLRRMRDFAQVMGDGTITRQV 243 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A A L RL ID +G ++ D L I NFGGGPVG ET++ + E D +ED EPY+I Sbjct: 244 AAAGLTRLEIDSLGLEKYDREILLSIIENFGGGPVGAETLAISIGESIDTLEDYYEPYLI 303 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID-IPH 333 Q G IQRTPRGR++ A++HLG++ PH Sbjct: 304 QCGLIQRTPRGRVVTEKAYKHLGLEGRPH 332 >gi|68536131|ref|YP_250836.1| Holliday junction DNA helicase B [Corynebacterium jeikeium K411] gi|260578826|ref|ZP_05846733.1| Holliday junction DNA helicase RuvB [Corynebacterium jeikeium ATCC 43734] gi|97190006|sp|Q4JVD9|RUVB_CORJK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|68263730|emb|CAI37218.1| holliday junction DNA helicase [Corynebacterium jeikeium K411] gi|258603124|gb|EEW16394.1| Holliday junction DNA helicase RuvB [Corynebacterium jeikeium ATCC 43734] Length = 354 Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 161/319 (50%), Positives = 228/319 (71%), Gaps = 1/319 (0%) Query: 16 DADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 D+DI + LRP++L+EF GQ + + L + + A++R A DHVL GPPGLGKTT+A ++ Sbjct: 31 DSDIDTSLRPKSLDEFIGQPKVRTQLDLVLGGARSRGVAPDHVLLAGPPGLGKTTMAMII 90 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF++ Sbjct: 91 AQELGSSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMAMEDFRI 150 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A S+ I ++ FTL+ ATTR G+LT PL+DRFG ++ FY+ DL +V R Sbjct: 151 DVIVGKGPGATSIPIEIAPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDTADLTRVVTR 210 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ +T +AA EIA RSRGTPRIA RLLRRVRDFA+V IT E+A AALL Sbjct: 211 AAGILGVDITGDAAAEIASRSRGTPRIANRLLRRVRDFADVNADGKITVEVARAALLVFD 270 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D+ G D+LD + + + GGGPVG+ T++ + E +E++ EPY+++ G + RTP Sbjct: 271 VDESGLDRLDRAVIEALVKGHGGGPVGVNTLALAVGEEPSTVEEVCEPYLVRAGMVSRTP 330 Query: 315 RGRLLMPIAWQHLGIDIPH 333 RGR+ AW+H+G++ P Sbjct: 331 RGRVATAAAWRHIGLEPPE 349 >gi|171910892|ref|ZP_02926362.1| Holliday junction DNA helicase B [Verrucomicrobium spinosum DSM 4136] Length = 344 Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 159/312 (50%), Positives = 223/312 (71%), Gaps = 1/312 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP EFTGQ L + +EAA+ R + LDHVL GPPGLGKTTLA +VA +G Sbjct: 21 LRPPDFSEFTGQERVKERLVLMVEAARQRGDTLDHVLLCGPPGLGKTTLANIVATAVGSK 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 STSGP I +AGDLA +LTNL++RD+LFIDEIHRL +EE LYPAMEDF+LD+++ +G Sbjct: 81 LHSTSGPQIERAGDLAGILTNLQERDILFIDEIHRLHPSIEEYLYPAMEDFRLDIIIDQG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+++I+L FTL+ ATTR G+LT P++ RFGIP RL++Y +++L+ I+ R A L + Sbjct: 141 PKARTIRIDLPPFTLVGATTRAGMLTAPMRGRFGIPNRLDYYTVDELQKILLRSAGLIQV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRLAIDKMGF 260 + + A E+A RSRGTPR+A LLR VRD+A+V A + ++ ++A AAL L ID+ G Sbjct: 201 QMESDGAREVAKRSRGTPRVANHLLRWVRDYAQVRAANQAVSGQVAAAALSMLDIDEDGL 260 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D++D R L + F GGPVG+ +I+ + E +ED+ EPY++ QG+++RTPRGR+ M Sbjct: 261 DEMDKRILDALINKFAGGPVGLNSIAVAVHEDASTLEDVHEPYLVMQGYVKRTPRGRVAM 320 Query: 321 PIAWQHLGIDIP 332 P A++ LG+ +P Sbjct: 321 PSAYKKLGLPVP 332 >gi|315037645|ref|YP_004031213.1| Holliday junction DNA helicase RuvB [Lactobacillus amylovorus GRL 1112] gi|312275778|gb|ADQ58418.1| Holliday junction DNA helicase RuvB [Lactobacillus amylovorus GRL 1112] Length = 338 Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 168/320 (52%), Positives = 225/320 (70%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S+E+A LRP+TL+++ GQ + ++I+AAK R EALDHVL GPPGLGKTTLA Sbjct: 16 SEEEAMELSLRPQTLDQYLGQERVKKEMSIYIKAAKKRDEALDHVLLYGPPGLGKTTLAF 75 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 V+A ELGV+ +STSGP I KAGDL ALL++L+ DVLFIDEIHRL+ VEEILY AMED+ Sbjct: 76 VIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEILYSAMEDY 135 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+++GEG + +V + L FTLI ATT G L+ PL+DRFGI + +Y +++L+ IV Sbjct: 136 YIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTVDELEKIV 195 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR + + ++ EAA E+A RSRGTPR+A RLL+RVRDFAEV KTI+ + AL + Sbjct: 196 QRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLATTENALKQ 255 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G DQ D + L + + GGPVGI T++A + E + IE L EPY++Q GFI Sbjct: 256 LQVDDEGLDQTDRKLLRTMIEGYNGGPVGIRTLAANIGEDMETIESLYEPYLLQHGFILL 315 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR++ A+ LG+ IP Sbjct: 316 TPRGRMVTDKAYLQLGLPIP 335 >gi|319937622|ref|ZP_08012026.1| Holliday junction DNA helicase B [Coprobacillus sp. 29_1] gi|319807264|gb|EFW03876.1| Holliday junction DNA helicase B [Coprobacillus sp. 29_1] Length = 334 Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 160/317 (50%), Positives = 225/317 (70%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S + + + LRP++ +E+ GQ SNLKVF+ AAK R E LDHVL GPPGLGKTT++ Sbjct: 12 SHNEDEENQLRPQSFDEYVGQSHLKSNLKVFVGAAKLRDETLDHVLLYGPPGLGKTTMSM 71 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+G + ++T+GP I K GDL A+LT+LE DVLFIDEIHRL+ +VEEILYPAMEDF Sbjct: 72 IIANEMGTHLKTTTGPSIEKTGDLVAILTSLEPGDVLFIDEIHRLNKVVEEILYPAMEDF 131 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+++G+ S RS++I+L FTL+ ATTR G L+ PL+DRFGI +L +Y ++L I+ Sbjct: 132 CVDVVIGKEASTRSIRIDLPPFTLVGATTRAGDLSAPLRDRFGIVSKLEYYNEDELTQII 191 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R +++ + + EA E+A RSRGTPRIA RL RRVRDFA+ IT+ AL R Sbjct: 192 NRTSRVYHMDMDLEAQSELAKRSRGTPRIANRLFRRVRDFAQYNGDDIITKARTVEALQR 251 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D++G D +D +Y+ I F GGPVG+E+++A + E +ED+ EPY++Q G I+R Sbjct: 252 LKVDELGLDDVDHKYILGIIHRFRGGPVGLESVAASIGEEPMTLEDVYEPYLLQTGLIKR 311 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR++ +A+QH I Sbjct: 312 TPRGRVVTELAYQHFHI 328 >gi|282889611|ref|ZP_06298152.1| hypothetical protein pah_c002o062 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500534|gb|EFB42812.1| hypothetical protein pah_c002o062 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 337 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 163/328 (49%), Positives = 230/328 (70%), Gaps = 1/328 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M + + + QED + LRP+ L++F GQ L+V I AAK R EAL H LF Sbjct: 1 MTTKNYIESSFCQEDTTFEVPLRPQALDDFAGQDSIRERLEVLIGAAKQRGEALGHCLFS 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A+ +G N TSGP+I KAGDLA +LTNL++ D+LFIDE+HRL Sbjct: 61 GPPGLGKTTLANILAKAMGTNIVVTSGPLIEKAGDLAGVLTNLKEGDILFIDELHRLQPA 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EE LYP MEDF LDLM+ +GP+ARS++I L RFTL+ ATTRVGLLT+P++ RF RL Sbjct: 121 IEEYLYPPMEDFVLDLMIDKGPNARSIQIKLPRFTLVGATTRVGLLTSPMRSRFAFSCRL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 ++YE + L+ I+ R A++ + + + EIA R+RGTPRIA LLR VRD+A++ Sbjct: 181 DYYEPKVLEQILGRTAQILHMTIDQKGLAEIAQRARGTPRIANHLLRWVRDYAQMRANNI 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT+ I AL LAID++GFD++D + L ++ ++ GGPVG+ T++ + E ++ IE++ Sbjct: 241 ITQPIVIKALEMLAIDQIGFDEMDKKILEVLIDDYNGGPVGLNTLAVAIGEEKNTIEEVH 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EPY+I +GFI+RTP+GR+ A++HLG Sbjct: 301 EPYLIMKGFIKRTPKGRVATESAYKHLG 328 >gi|237752769|ref|ZP_04583249.1| holliday junction DNA helicase B [Helicobacter winghamensis ATCC BAA-430] gi|229376258|gb|EEO26349.1| holliday junction DNA helicase B [Helicobacter winghamensis ATCC BAA-430] Length = 333 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 163/297 (54%), Positives = 219/297 (73%), Gaps = 1/297 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +++ GQ + NL+VFIEAAK R + LDH+L GPPGLGKTTLA +++ E+ + Sbjct: 20 LRPSCWDDYIGQEKLKKNLQVFIEAAKKRGDVLDHLLLFGPPGLGKTTLAHIISTEMQTS 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I KAGDLAA+LTNL + ++LFIDEIHRLS +EEILYPAMEDF+LD+++G G Sbjct: 80 IKVTAAPMIEKAGDLAAILTNLNEGEILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+SVKI+L RFTLI ATTR G+++NPL+DRFG+ R+ FYE ++L IV + Sbjct: 140 PAAQSVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQFYENDELAKIVTLASIKLQK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 E A EIA RSRGTPRIA RLL+RVRDFAEVA IT+E AL L +++ GFD Sbjct: 200 ECKKEGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEAMITKERTQYALNELGVNEHGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318 +LDLR+L +I + G P+G+ T++A +SE IED+IEPY++ GF++RT RGR+ Sbjct: 260 ELDLRFLKIICES-RGRPIGLSTLAAAMSEDEGTIEDVIEPYLLVNGFLERTARGRI 315 >gi|239616615|ref|YP_002939937.1| Holliday junction DNA helicase RuvB [Kosmotoga olearia TBF 19.5.1] gi|259495671|sp|C5CIU4|RUVB_KOSOT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|239505446|gb|ACR78933.1| Holliday junction DNA helicase RuvB [Kosmotoga olearia TBF 19.5.1] Length = 342 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 166/308 (53%), Positives = 220/308 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ LK+ IEAAK R EALDHVL GPPGLGKTTLA ++A E+G N Sbjct: 20 LRPQRLDEYIGQRNVKQRLKISIEAAKVRNEALDHVLLAGPPGLGKTTLAHIIANEMGTN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGPVI K GDLAA+LT+LE+ DVLFIDEIHRL +EEILY AMEDF+LD+M+G+G Sbjct: 80 IYVTSGPVIEKQGDLAAILTSLEEGDVLFIDEIHRLGRAIEEILYSAMEDFKLDIMIGKG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++++L+ FTL+ ATTR GL+ PL++RFG+ + L FY ++LK I++R A+L + Sbjct: 140 PSARSIRLDLAPFTLVGATTRSGLIGAPLRNRFGMVLELEFYTPDELKQIIKRSARLLEV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEAA +A RSRGTPRIA RLLRRVRD A V I + + A+ + ID G D Sbjct: 200 KIDDEAAELLASRSRGTPRIANRLLRRVRDLATVDGTGKILSKTVEDAMKIMGIDAEGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L ++ N+ GGP G++ I+A + D I ++ EPY++Q GFI RT RGR+ Sbjct: 260 DMDRKILRVLIENYEGGPAGLKAIAASVGIEADTISEVYEPYLLQSGFIVRTNRGRMATK 319 Query: 322 IAWQHLGI 329 A++HLGI Sbjct: 320 KAYRHLGI 327 >gi|313158960|gb|EFR58337.1| Holliday junction DNA helicase RuvB [Alistipes sp. HGB5] Length = 335 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 166/311 (53%), Positives = 221/311 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ LE F+GQ + NL++FI+AA R ++LDHVL GPPGLGKTTLA +++ E+ Sbjct: 17 IRPQELETFSGQDKIVDNLRIFIKAALMRGDSLDHVLLHGPPGLGKTTLANIISNEMNAQ 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ K GDLA LLT+L DVLFIDEIHRLS IVEE LY AMED+++D+++ +G Sbjct: 77 LRVTSGPVLDKPGDLAGLLTSLNPGDVLFIDEIHRLSPIVEEYLYSAMEDYKIDIVLDKG 136 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I L+ FTLI ATTR GLLT+PL+ RFGI L +Y+ L IV+R A++ + Sbjct: 137 PSARSIQIELAPFTLIGATTRSGLLTSPLRARFGIQCHLEYYDAPVLAGIVKRSARILDV 196 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ D+AA E+A+RSRGTPRIA LLRRVRDFA V I EI L L ID G D Sbjct: 197 SIDDDAAHEVALRSRGTPRIANALLRRVRDFAMVKGEGHIDLEITQIGLAALNIDSRGLD 256 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + L I FGGGPVG+ TI+ + E IE++ EP++I++GF++RTPRGR Sbjct: 257 QMDNKILGTIIEKFGGGPVGLNTIATAVGEDAGTIEEVYEPFLIKEGFLKRTPRGREATE 316 Query: 322 IAWQHLGIDIP 332 +A++H+G P Sbjct: 317 LAYRHMGFTPP 327 >gi|283769123|ref|ZP_06342028.1| Holliday junction DNA helicase RuvB [Bulleidia extructa W1219] gi|283104309|gb|EFC05687.1| Holliday junction DNA helicase RuvB [Bulleidia extructa W1219] Length = 337 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 165/309 (53%), Positives = 225/309 (72%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L+E+ GQ NL+++I+AA AR E+LDHVL GPPGLGKTTLA ++A E+ Sbjct: 20 LRPISLQEYIGQDRLKENLRIYIQAALAREESLDHVLLYGPPGLGKTTLAHILANEMNSK 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-E 140 + TSGP IAKAGDLA++L+ LE DVLFIDEIHRL +VEE+LYPAMEDF LD+ +G + Sbjct: 80 IKVTSGPSIAKAGDLASILSVLEPGDVLFIDEIHRLPKVVEEVLYPAMEDFVLDVTIGGD 139 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 S RS++++L FTL+ ATTR G L++PL+DRFGI +L +Y E L IV R A++ Sbjct: 140 SGSVRSLRLDLPPFTLVGATTRAGDLSSPLRDRFGITSKLEYYTQEQLAKIVARTARVLD 199 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + ++A EIA RSRGTPRIA RLLRR+RDFA+V + ++ EIA AL RL +D++G Sbjct: 200 TPIEEKAVIEIAKRSRGTPRIANRLLRRIRDFAQVLNHGYLSYEIARDALQRLHVDELGL 259 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D++D+RYL I F GGPVG+++++ +SE +ED+ EPY+IQ GF+ RT RGR++ Sbjct: 260 DEVDIRYLKGIIERFHGGPVGLDSLANAISEETTTLEDVYEPYLIQIGFVNRTSRGRVVT 319 Query: 321 PIAWQHLGI 329 A++HL I Sbjct: 320 EKAYEHLHI 328 >gi|118473727|ref|YP_887264.1| Holliday junction DNA helicase RuvB [Mycobacterium smegmatis str. MC2 155] gi|171472979|sp|A0QWH6|RUVB_MYCS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|118175014|gb|ABK75910.1| holliday junction DNA helicase RuvB [Mycobacterium smegmatis str. MC2 155] Length = 351 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 167/330 (50%), Positives = 229/330 (69%), Gaps = 1/330 (0%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 DRE + V + D D SL RPR+L EF GQ L++ +E AK R DH+L GP Sbjct: 12 DREVSPALTVGEGDIDASL-RPRSLGEFIGQPRVREQLQLVLEGAKKRGGTPDHILLSGP 70 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ E Sbjct: 71 PGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 130 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++F Sbjct: 131 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 190 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE +L+ ++ R A + G+ + EA EIA RSRGTPRIA RLLRRVRDFAEV IT Sbjct: 191 YEPVELERVLARSAGILGIELGAEAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGIIT 250 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 R+IA +AL +D++G D+LD L+ + R+F GGPVG+ T++ + E +E++ EP Sbjct: 251 RDIAKSALEVYDVDELGLDRLDRAVLSALTRSFNGGPVGVSTLAVAVGEEATTVEEVCEP 310 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++ G I RTPRGR+ P+AW HLG+ P Sbjct: 311 FLVRAGMIARTPRGRVATPLAWTHLGLQPP 340 >gi|30022495|ref|NP_834126.1| Holliday junction DNA helicase B [Bacillus cereus ATCC 14579] gi|29898053|gb|AAP11327.1| Holliday junction DNA helicase ruvB [Bacillus cereus ATCC 14579] Length = 286 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 161/283 (56%), Positives = 212/283 (74%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL 109 R E LDHVL GPPGLGKTTLA ++A E+GVN ++TSGP I + GDLAA+LT L+ DVL Sbjct: 2 REETLDHVLLYGPPGLGKTTLANIIANEMGVNVKTTSGPAIGRPGDLAAVLTALQPGDVL 61 Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169 FIDEIHRL +EE+LYPAMEDF LD+++G+GPSARSV+++L FTL+ ATTR G L+ P Sbjct: 62 FIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAP 121 Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 L+DRFG+ R+ +Y ++ L IV+R A++ + + AA EIA R+RGTPRIA RLLRRV Sbjct: 122 LRDRFGVLSRVEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRV 181 Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289 RDFA+V T+T EI AL L +DK+G D +D + L I F GGPVG+ET+SA + Sbjct: 182 RDFAQVRGNGTVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSAPI 241 Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 E IED+ EPY++Q GF+QRTPRGR++ P+A++H G++IP Sbjct: 242 GEESHTIEDVYEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEIP 284 >gi|284044635|ref|YP_003394975.1| Holliday junction DNA helicase RuvB [Conexibacter woesei DSM 14684] gi|283948856|gb|ADB51600.1| Holliday junction DNA helicase RuvB [Conexibacter woesei DSM 14684] Length = 338 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 171/311 (54%), Positives = 213/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L+EF GQ L V IEAA AR +ALDHVL GPPGLGKT+LAQ+VA ELGV Sbjct: 21 LRPRRLDEFVGQEAVREQLSVSIEAASARGDALDHVLLAGPPGLGKTSLAQIVAEELGVQ 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F T+GP + + GD+AA LT LE R V F+DEIHRL +EE YPAMED QL + VG+G Sbjct: 81 FIQTAGPALERKGDVAAFLTALEPRAVFFVDEIHRLPRALEETFYPAMEDGQLPITVGQG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A+ V ++L FTL+ ATTR GLLT PL+DRFGI RL Y +DL IV+R A L G+ Sbjct: 141 AGAKVVTLDLPPFTLVGATTRAGLLTTPLRDRFGIQHRLEHYGPDDLGRIVRRSAALLGI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V A IA RSRGTPR+A RLL+RVRD+AEV +T ++A AL L +D MG D Sbjct: 201 EVEQAGARAIAARSRGTPRVANRLLKRVRDYAEVRGDGIVTEQVAAHALDLLQVDAMGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L I F GGPVG+ T++ + E +D IED+ EPY++Q+G I+RTPRGR+ Sbjct: 261 RLDREVLRAICEMFSGGPVGLSTLAVAVGEEQDTIEDVYEPYLLQRGLIERTPRGRVATV 320 Query: 322 IAWQHLGIDIP 332 AW+HLG++ P Sbjct: 321 RAWRHLGLEPP 331 >gi|15609729|ref|NP_217108.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis H37Rv] gi|15842132|ref|NP_337169.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis CDC1551] gi|31793776|ref|NP_856269.1| Holliday junction DNA helicase RuvB [Mycobacterium bovis AF2122/97] gi|121638477|ref|YP_978701.1| Holliday junction DNA helicase RuvB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662431|ref|YP_001283954.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis H37Ra] gi|148823787|ref|YP_001288541.1| Holliday junction DNA helicase B [Mycobacterium tuberculosis F11] gi|215404542|ref|ZP_03416723.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis 02_1987] gi|215412368|ref|ZP_03421128.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis 94_M4241A] gi|215427995|ref|ZP_03425914.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis T92] gi|215431547|ref|ZP_03429466.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis EAS054] gi|215446843|ref|ZP_03433595.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis T85] gi|218754330|ref|ZP_03533126.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis GM 1503] gi|219558596|ref|ZP_03537672.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis T17] gi|224990971|ref|YP_002645658.1| Holliday junction DNA helicase B [Mycobacterium bovis BCG str. Tokyo 172] gi|253798326|ref|YP_003031327.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN 1435] gi|254232710|ref|ZP_04926037.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis C] gi|254365261|ref|ZP_04981306.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis str. Haarlem] gi|254551643|ref|ZP_05142090.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187605|ref|ZP_05765079.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis CPHL_A] gi|260201720|ref|ZP_05769211.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis T46] gi|260205914|ref|ZP_05773405.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis K85] gi|289444131|ref|ZP_06433875.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis T46] gi|289448242|ref|ZP_06437986.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis CPHL_A] gi|289553619|ref|ZP_06442829.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN 605] gi|289570763|ref|ZP_06450990.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis T17] gi|289575302|ref|ZP_06455529.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis K85] gi|289746385|ref|ZP_06505763.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis 02_1987] gi|289751216|ref|ZP_06510594.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis T92] gi|289754711|ref|ZP_06514089.1| holliday junction DNA helicase B [Mycobacterium tuberculosis EAS054] gi|289758723|ref|ZP_06518101.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis T85] gi|289762765|ref|ZP_06522143.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis GM 1503] gi|294994299|ref|ZP_06799990.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis 210] gi|297635202|ref|ZP_06952982.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis KZN 4207] gi|297732195|ref|ZP_06961313.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis KZN R506] gi|298526067|ref|ZP_07013476.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis 94_M4241A] gi|306776866|ref|ZP_07415203.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu001] gi|306972981|ref|ZP_07485642.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu010] gi|307080691|ref|ZP_07489861.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu011] gi|307085280|ref|ZP_07494393.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu012] gi|313659530|ref|ZP_07816410.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis KZN V2475] gi|54039577|sp|P66754|RUVB_MYCBO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|54042205|sp|P66753|RUVB_MYCTU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231503|sp|A1KLU0|RUVB_MYCBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231504|sp|A5U5U2|RUVB_MYCTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767433|sp|C1AF61|RUVB_MYCBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|3261621|emb|CAB01285.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVB [Mycobacterium tuberculosis H37Rv] gi|13882416|gb|AAK46983.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis CDC1551] gi|31619370|emb|CAD94808.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVB [Mycobacterium bovis AF2122/97] gi|121494125|emb|CAL72603.1| Probable holliday junction DNA helicase ruvB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601769|gb|EAY60779.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis C] gi|134150774|gb|EBA42819.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis str. Haarlem] gi|148506583|gb|ABQ74392.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis H37Ra] gi|148722314|gb|ABR06939.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis F11] gi|224774084|dbj|BAH26890.1| Holliday junction DNA helicase B [Mycobacterium bovis BCG str. Tokyo 172] gi|253319829|gb|ACT24432.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN 1435] gi|289417050|gb|EFD14290.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis T46] gi|289421200|gb|EFD18401.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis CPHL_A] gi|289438251|gb|EFD20744.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN 605] gi|289539733|gb|EFD44311.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis K85] gi|289544517|gb|EFD48165.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis T17] gi|289686913|gb|EFD54401.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis 02_1987] gi|289691803|gb|EFD59232.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis T92] gi|289695298|gb|EFD62727.1| holliday junction DNA helicase B [Mycobacterium tuberculosis EAS054] gi|289710271|gb|EFD74287.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis GM 1503] gi|289714287|gb|EFD78299.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis T85] gi|298495861|gb|EFI31155.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis 94_M4241A] gi|308214721|gb|EFO74120.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu001] gi|308357597|gb|EFP46448.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu010] gi|308361539|gb|EFP50390.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu011] gi|308365150|gb|EFP54001.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu012] gi|323718788|gb|EGB27945.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis CDC1551A] gi|326904205|gb|EGE51138.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis W-148] gi|328458096|gb|AEB03519.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN 4207] Length = 344 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 165/330 (50%), Positives = 230/330 (69%), Gaps = 1/330 (0%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 DR+ + V + D D+SL RPR+L EF GQ L++ IE AK R DH+L GP Sbjct: 6 DRDVSPALTVGEGDIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILLSGP 64 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ E Sbjct: 65 PGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 124 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++F Sbjct: 125 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 184 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE +L+ ++ R A + G+ + +A EIA RSRGTPRIA RLLRRVRDFAEV IT Sbjct: 185 YEPAELERVLARSAGILGIELGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVIT 244 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 R++A AAL +D++G D+LD L+ + R+FGGGPVG+ T++ + E +E++ EP Sbjct: 245 RDVAKAALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEAATVEEVCEP 304 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++ G + RTPRGR+ +AW HLG+ P Sbjct: 305 FLVRAGMVARTPRGRVATALAWTHLGMTPP 334 >gi|325956130|ref|YP_004286740.1| Holliday junction DNA helicase RuvB [Lactobacillus acidophilus 30SC] gi|325332695|gb|ADZ06603.1| Holliday junction DNA helicase RuvB [Lactobacillus acidophilus 30SC] gi|327182938|gb|AEA31385.1| Holliday junction DNA helicase RuvB [Lactobacillus amylovorus GRL 1118] Length = 338 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 167/320 (52%), Positives = 225/320 (70%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S+E+A LRP+TL+++ GQ + ++I+AAK R EALDHVL GPPGLGKTTLA Sbjct: 16 SEEEAMELSLRPQTLDQYLGQERVKKEMSIYIKAAKQRDEALDHVLLYGPPGLGKTTLAF 75 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 V+A ELGV+ +STSGP I KAGDL ALL++L+ DVLFIDEIHRL+ VEE+LY AMED+ Sbjct: 76 VIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAMEDY 135 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+++GEG + +V + L FTLI ATT G L+ PL+DRFGI + +Y +++L+ IV Sbjct: 136 YIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTVDELEKIV 195 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR + + ++ EAA E+A RSRGTPR+A RLL+RVRDFAEV KTI+ + AL + Sbjct: 196 QRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLATTENALKQ 255 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G DQ D + L + + GGPVGI T++A + E + IE L EPY++Q GFI Sbjct: 256 LQVDDEGLDQTDRKLLRTMIEGYNGGPVGIRTLAANIGEDMETIESLYEPYLLQHGFILL 315 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR++ A+ LG+ IP Sbjct: 316 TPRGRMVTDKAYLQLGLPIP 335 >gi|304383686|ref|ZP_07366145.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella marshii DSM 16973] gi|304335210|gb|EFM01481.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella marshii DSM 16973] Length = 360 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 166/313 (53%), Positives = 223/313 (71%), Gaps = 1/313 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + +F+GQ + +NL+VF+EAAK R E LDH L GPPGLGKTTL+ ++A ELG Sbjct: 38 LRPLSFGDFSGQQKVVNNLEVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGSG 97 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPV+ K GDLA +LT+LE DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G Sbjct: 98 LKITSGPVLDKPGDLAGILTSLEKNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 157 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARS++I+L+ FTL+ ATTR GLLT PL+ RF I + L +Y+ + L I+ R A + G+ Sbjct: 158 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFTINLHLEYYDADTLTQIILRSAGILGV 217 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EIA RSRGTPRIA LLRRVRDFA+V I I AL L ID+ G D Sbjct: 218 PIAPDAAVEIAGRSRGTPRIANGLLRRVRDFAQVKGDGRIDIGITRLALSALNIDQYGLD 277 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+ TI+ + E +E++ EP++I +GFI+RTPRGR++ Sbjct: 278 EIDNKILLTIIDKFKGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVVTE 337 Query: 322 IAWQHLGIDIPHR 334 +A++H G D P+R Sbjct: 338 LAYRHFGRD-PYR 349 >gi|291276417|ref|YP_003516189.1| Holliday junction DNA helicase [Helicobacter mustelae 12198] gi|290963611|emb|CBG39443.1| holliday junction DNA helicase [Helicobacter mustelae 12198] Length = 331 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 164/322 (50%), Positives = 229/322 (71%), Gaps = 6/322 (1%) Query: 2 MDREGLLSRNVSQEDADI-----SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56 M+R L SR V+ E D + LRP E++ GQ NL VFI A+ R E LDH Sbjct: 1 MERHSLDSRLVNVERIDFEKKEENSLRPSAWEDYIGQERIKKNLDVFIRASLKRGECLDH 60 Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116 +LF GPPGLGKTTL+ ++A ++G + T+ P+I K+GDLAA++TNL + ++LFIDEIHR Sbjct: 61 ILFFGPPGLGKTTLSHIIANQMGSMIKVTAAPMIEKSGDLAAIMTNLREGEILFIDEIHR 120 Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176 LS +EEILYPAMEDF+LD+++G GP+A+++KI+L RFTLI ATTR G+L+NPL+DRFG+ Sbjct: 121 LSPAIEEILYPAMEDFRLDIIIGSGPAAQTIKIDLPRFTLIGATTRAGMLSNPLRDRFGM 180 Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236 R+ FY I++L I++R AK + +A EIA RSRGTPRIA RLL+RVRDF+E+ Sbjct: 181 SFRMEFYSIQELSLIIERAAKRLDKRIEKNSADEIAKRSRGTPRIALRLLKRVRDFSEIK 240 Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296 + + I+ AL L I+ +GFD LDLRYL ++ R+ G P+G+ TI+A +SE I Sbjct: 241 NEECISHATTIYALNELGINTLGFDALDLRYLDIL-RSAKGKPIGLSTIAAAMSEDEGTI 299 Query: 297 EDLIEPYMIQQGFIQRTPRGRL 318 E+ IEPY++ G++++T RGR+ Sbjct: 300 EEAIEPYLLANGYLEKTARGRI 321 >gi|283956748|ref|ZP_06374224.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni 1336] gi|283791723|gb|EFC30516.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni 1336] Length = 335 Score = 332 bits (852), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 158/309 (51%), Positives = 224/309 (72%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + + GQ NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E+G N Sbjct: 20 LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS +EE+LYPAMED++LD+++G G Sbjct: 80 IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+ RL FY+ +L I+Q+ A Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++AA EIA RSR TPRIA RLL+RVRDFA+V + IT + A+ AL L ++++GFD Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +DLRYL ++ P+G+ +I+A LSE + IED+IEPY++ G+I+RT +GR+ Sbjct: 260 AMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIAST 318 Query: 322 IAWQHLGID 330 ++ L ++ Sbjct: 319 KSYSALKLN 327 >gi|157415600|ref|YP_001482856.1| Holliday junction DNA helicase B [Campylobacter jejuni subsp. jejuni 81116] gi|172047177|sp|A8FN42|RUVB_CAMJ8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157386564|gb|ABV52879.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni 81116] gi|307748243|gb|ADN91513.1| Holliday junction ATP-dependent DNA helicase ruvB [Campylobacter jejuni subsp. jejuni M1] gi|315931420|gb|EFV10388.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni 327] Length = 335 Score = 332 bits (852), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 158/309 (51%), Positives = 224/309 (72%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + + GQ NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E+G N Sbjct: 20 LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS +EE+LYPAMED++LD+++G G Sbjct: 80 IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+ RL FY+ +L I+Q+ A Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++AA EIA RSR TPRIA RLL+RVRDFA+V + IT + A+ AL L ++++GFD Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +DLRYL ++ P+G+ +I+A LSE + IED+IEPY++ G+I+RT +GR+ Sbjct: 260 AMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASA 318 Query: 322 IAWQHLGID 330 ++ L ++ Sbjct: 319 KSYSALKLN 327 >gi|315638163|ref|ZP_07893345.1| crossover junction ATP-dependent DNA helicase RuvB [Campylobacter upsaliensis JV21] gi|315481699|gb|EFU72321.1| crossover junction ATP-dependent DNA helicase RuvB [Campylobacter upsaliensis JV21] Length = 350 Score = 332 bits (852), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 165/330 (50%), Positives = 234/330 (70%), Gaps = 2/330 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 +MDR + + S E + SL RP + + GQ NL +FI AAK R E LDH+LF Sbjct: 15 IMDRIVEIEKFSSDETYESSL-RPSNFDGYIGQDNIKKNLHIFINAAKKRGECLDHILFS 73 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GP GLGKTTLA ++A E+G N ++T+ P+I K+GDLAA+LTNL + DVLFIDEIHRLS Sbjct: 74 GPAGLGKTTLANIIATEMGANIKTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPA 133 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+ RL Sbjct: 134 IEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRL 193 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY+ E+L I+Q+ A ++AA EIA RSR TPRIA RLL+RVRDFA+V + Sbjct: 194 EFYKNEELALILQKAALKLNKNCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEN 253 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I+ A AL L ++++GFD +DLRYL ++ + G +G+ +I+A LSE + +ED+I Sbjct: 254 ISLVRAYEALNSLGVNELGFDSMDLRYLELLT-SAKGKAMGLASIAAALSEDENTVEDVI 312 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY++ G+I+RT +GR+ ++ L ++ Sbjct: 313 EPYLLANGYIERTAKGRIASIKSYHTLKLN 342 >gi|194333365|ref|YP_002015225.1| Holliday junction DNA helicase RuvB [Prosthecochloris aestuarii DSM 271] gi|238693320|sp|B4S5I1|RUVB_PROA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|194311183|gb|ACF45578.1| Holliday junction DNA helicase RuvB [Prosthecochloris aestuarii DSM 271] Length = 343 Score = 332 bits (852), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 167/309 (54%), Positives = 222/309 (71%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE+F+GQ NL++FI AA+ R EALDHVLF GPPGLGKTTLA ++A ELG Sbjct: 21 IRPSRLEDFSGQQRLTDNLRIFIAAARQRGEALDHVLFSGPPGLGKTTLAHIIASELGGG 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP++ K G+LA LLT+L+ DVLFIDEIHRL+ VEE LY AMEDF++D+++ G Sbjct: 81 LKITSGPLLDKPGNLAGLLTSLQKGDVLFIDEIHRLTPAVEEYLYSAMEDFRIDILLDSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSARSV++ L FTL+ ATTR GLLT+PL+ RFGI RL++Y E L+ I+ R A + G+ Sbjct: 141 PSARSVQLRLEPFTLVGATTRAGLLTSPLRARFGISNRLDYYSAELLQRIIIRTATILGI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ +AA EIA RSRGTPRIA RLL+R RDF +VA + I+ E+A L L ID+ G D Sbjct: 201 AIDQQAADEIARRSRGTPRIANRLLKRARDFTQVAQSSVISLELARKTLAALEIDEDGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + + + F GGPVGI +++ + E D IE++ EPY+IQ GFI RTPRGR+ Sbjct: 261 DMDKKIILSLLQKFDGGPVGISSLAVSVGEEHDTIEEVYEPYLIQTGFIARTPRGRVATK 320 Query: 322 IAW-QHLGI 329 A+ + LG+ Sbjct: 321 NAYRKFLGV 329 >gi|257866611|ref|ZP_05646264.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus EC30] gi|257872873|ref|ZP_05652526.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus EC10] gi|257876216|ref|ZP_05655869.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus EC20] gi|257800569|gb|EEV29597.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus EC30] gi|257807037|gb|EEV35859.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus EC10] gi|257810382|gb|EEV39202.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus EC20] Length = 333 Score = 332 bits (852), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 164/327 (50%), Positives = 220/327 (67%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD + + QE+ LRP+TL ++ GQ + L ++I+AAK R EALDHVL G Sbjct: 1 MDERIVSPESTEQEEIIEKSLRPQTLAQYIGQDKVKQELSIYIQAAKNREEALDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTT+A V+A E+ V ++TSGP I K GDL A+L L+ DVLFIDEIHRL + Sbjct: 61 PPGLGKTTMAMVIANEMQVQIKTTSGPAIEKPGDLIAILNELQPGDVLFIDEIHRLPRVA 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF +D+MVG+G +A V L FTL+ ATTR G+L+ PL+DRFGI + Sbjct: 121 EEMLYSAMEDFYVDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMQ 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +YE DLK IVQR A + + +E A EIA RSRGTPRIA RLL+RVRD+A+V I Sbjct: 181 YYEDHDLKEIVQRTASIFETDIVEEGAIEIARRSRGTPRIANRLLKRVRDYAQVQADGLI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 R +AD AL LA+D G D +D + + + + GGPVG+ TI+ + E + +ED+ E Sbjct: 241 DRTVADQALALLAVDHAGLDYIDQKLIRTMIELYQGGPVGLSTIAVNIGEETETVEDMYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328 P++IQ+GF++RT RGR+ P+A+ H G Sbjct: 301 PFLIQKGFLKRTSRGRIATPLAYDHFG 327 >gi|323341473|ref|ZP_08081714.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus ruminis ATCC 25644] gi|323091084|gb|EFZ33715.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus ruminis ATCC 25644] Length = 335 Score = 332 bits (852), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 167/319 (52%), Positives = 224/319 (70%), Gaps = 1/319 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + E AD++L RP+TL+ + GQ + L V+I AAK R E+LDHVL GPPGLGKTTLA Sbjct: 15 ASEQADLTL-RPKTLKTYIGQEKIKRELSVYIAAAKQREESLDHVLLYGPPGLGKTTLAC 73 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+ V ++T+GP I K GDL ALL LE DVLFIDEIHRL VEEILY AMEDF Sbjct: 74 IIANEMQVGIKTTTGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPKNVEEILYSAMEDF 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D++VG+ +A V+ L FTL+ ATTR G+L+ PL+ RFGI +N+YE ++L IV Sbjct: 134 YIDIIVGQDSAAHPVRFPLPPFTLVGATTRAGMLSAPLRARFGIVGHMNYYEDDELTRIV 193 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR A + ++ + A EIA RSRGTPR+A RLL+RVRDFAEVAH I +I AL Sbjct: 194 QRSAAVFAAQISADGAFEIARRSRGTPRVANRLLKRVRDFAEVAHKDEIDTQIVCYALDL 253 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D+ G D D R L + +GGGPVG+ T++A + E + + D+IEPY++Q+GFI+R Sbjct: 254 LRVDQCGLDDTDRRLLRTMIELYGGGPVGLATLAANIGEETETVADMIEPYLMQRGFIKR 313 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR++ P+A++HL + I Sbjct: 314 TPRGRMVTPLAYKHLNLKI 332 >gi|319442164|ref|ZP_07991320.1| Holliday junction DNA helicase RuvB [Corynebacterium variabile DSM 44702] Length = 365 Score = 332 bits (852), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 162/320 (50%), Positives = 225/320 (70%), Gaps = 1/320 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +D+++SL RPR+L EF GQ + L + + A+AR DHVL GPPGLGKTT+A + Sbjct: 46 DDDSELSL-RPRSLTEFIGQPKVRGQLDLVLGGARARGVVPDHVLLAGPPGLGKTTMAMI 104 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A+EL + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF+ Sbjct: 105 IAQELSTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMAMEDFR 164 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D++VG+GP A S+ I L FTL+ ATTR G+LT PL+DRFG ++ FY+ DL +V Sbjct: 165 IDVIVGKGPGATSIPIELPPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDTADLTAVVT 224 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + G+ +T +AA EIA RSRGTPRIA RLLRRVRD+A+V IT ++A AALL Sbjct: 225 RAASILGVDITGDAAAEIASRSRGTPRIANRLLRRVRDYADVRADGAITVDVARAALLVF 284 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D++G D+LD L + + GGGPVG+ T++ + E +E++ EPY+++ G I RT Sbjct: 285 DVDELGLDRLDRAVLGSLVKTHGGGPVGVNTLAVAVGEESTTVEEVCEPYLVRAGMIART 344 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 RGR+ P AW+HLG++ P Sbjct: 345 SRGRVATPSAWRHLGLEPPE 364 >gi|331701281|ref|YP_004398240.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus buchneri NRRL B-30929] gi|329128624|gb|AEB73177.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus buchneri NRRL B-30929] Length = 342 Score = 332 bits (852), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 161/311 (51%), Positives = 217/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E+ GQ + + L+V+I+AAK R E+LDHVL GPPGLGKTTLA V+A E+GVN Sbjct: 26 LRPRVLSEYIGQDDVKNELRVYIKAAKQREESLDHVLLYGPPGLGKTTLAMVIANEMGVN 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP I K GDL +LL L+ DVLFIDEIHRL +VEE+LY AMEDF +D++VG+G Sbjct: 86 IRTTSGPAIDKPGDLLSLLNELQPGDVLFIDEIHRLPKVVEEMLYSAMEDFFVDIIVGQG 145 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A + L FTLI ATT+ G+L+ PL+DRFGI +N+Y DL+ IV+R A + + Sbjct: 146 SGAHPIHFPLPPFTLIGATTQAGMLSAPLRDRFGIVEHMNYYNATDLEDIVRRTADIFQI 205 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D A EIA+RSRGTPR+A RLL+RVRDFA+V+ + I AL +L +D +G D Sbjct: 206 DIEDSGAHEIALRSRGTPRVANRLLKRVRDFAQVSDKDQVDLSIVRYALAKLKVDDLGLD 265 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 DL+ LT + + + GGPVG+ T++A + E D I ++ EPY++Q G I+RT RGR++ P Sbjct: 266 ATDLKLLTTMIKYYDGGPVGLNTLAANIGEETDTIAEMYEPYLLQIGLIKRTARGRIVTP 325 Query: 322 IAWQHLGIDIP 332 + HL +P Sbjct: 326 KGYAHLSYPMP 336 >gi|70726281|ref|YP_253195.1| Holliday junction DNA helicase RuvB [Staphylococcus haemolyticus JCSC1435] gi|97190346|sp|Q4L6Y6|RUVB_STAHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|68447005|dbj|BAE04589.1| holliday junction DNA helicase [Staphylococcus haemolyticus JCSC1435] Length = 331 Score = 332 bits (852), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 165/328 (50%), Positives = 226/328 (68%), Gaps = 3/328 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR ++ + + E+ L LRP L+++ GQ +NL+VFI+AAK R E LDHVL Sbjct: 1 MDDR--MVDQALHSEETSFELSLRPTMLKQYIGQSSIKNNLEVFIKAAKLREEPLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS Sbjct: 59 FGPPGLGKTTLSNIIANEMNVNIRTVSGPSLDRPGDLAAILSGLQPGDVLFIDEIHRLSS 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LY AMEDF +D+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ +R Sbjct: 119 TVEEVLYSAMEDFFIDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L +Y DLK I+ R A++ + DE+A E+A RSRGTPR+A RLL+RVRDF +V + Sbjct: 179 LEYYNENDLKEIIIRTAEVLNTKIDDESATELAKRSRGTPRVANRLLKRVRDFQQVNEDE 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I E AL L +D G D +D + + I + GGPVG++TI+ + E R IED+ Sbjct: 239 QIYIETTKQALQLLQVDAEGLDYIDHKMMRCIINQYDGGPVGLDTIAVSIGEERITIEDV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EP++IQ+GFI+RTPRGR A++H Sbjct: 299 YEPFLIQKGFIERTPRGRKATAFAYEHF 326 >gi|306785394|ref|ZP_07423716.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu003] gi|306789994|ref|ZP_07428316.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu004] gi|306794075|ref|ZP_07432377.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu005] gi|306798489|ref|ZP_07436791.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu006] gi|306804352|ref|ZP_07441020.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu008] gi|306807608|ref|ZP_07444276.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu007] gi|306969810|ref|ZP_07482471.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu009] gi|308329913|gb|EFP18764.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu003] gi|308333528|gb|EFP22379.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu004] gi|308337555|gb|EFP26406.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu005] gi|308341222|gb|EFP30073.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu006] gi|308346004|gb|EFP34855.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu007] gi|308349029|gb|EFP37880.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu008] gi|308352727|gb|EFP41578.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis SUMu009] Length = 344 Score = 332 bits (851), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 165/330 (50%), Positives = 229/330 (69%), Gaps = 1/330 (0%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 DR + V + D D+SL RPR+L EF GQ L++ IE AK R DH+L GP Sbjct: 6 DRNVSPALTVGEGDIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILLSGP 64 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ E Sbjct: 65 PGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 124 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++F Sbjct: 125 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 184 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE +L+ ++ R A + G+ + +A EIA RSRGTPRIA RLLRRVRDFAEV IT Sbjct: 185 YEPAELERVLARSAGILGIELGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVIT 244 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 R++A AAL +D++G D+LD L+ + R+FGGGPVG+ T++ + E +E++ EP Sbjct: 245 RDVAKAALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEAATVEEVCEP 304 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++ G + RTPRGR+ +AW HLG+ P Sbjct: 305 FLVRAGMVARTPRGRVATALAWTHLGMTPP 334 >gi|227877606|ref|ZP_03995660.1| crossover junction endoribonuclease subunit B [Lactobacillus crispatus JV-V01] gi|256849060|ref|ZP_05554493.1| Holliday junction DNA helicase B [Lactobacillus crispatus MV-1A-US] gi|262047542|ref|ZP_06020497.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus MV-3A-US] gi|227862800|gb|EEJ70265.1| crossover junction endoribonuclease subunit B [Lactobacillus crispatus JV-V01] gi|256713836|gb|EEU28824.1| Holliday junction DNA helicase B [Lactobacillus crispatus MV-1A-US] gi|260572118|gb|EEX28683.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus MV-3A-US] Length = 339 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 167/322 (51%), Positives = 226/322 (70%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N ++ ++SL RP+TL+++ GQ + ++I+AA+ R EALDHVL GPPGLGKTTL Sbjct: 16 NPEEQQMELSL-RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 74 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A V+A ELGV+ +STSGP I KAGDL ALL++L+ DVLFIDEIHRL+ VEE+LY AME Sbjct: 75 AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 134 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+ +D+++GEG + +V + L FTLI ATT G L+ PL+DRFGI + +Y I++L+ Sbjct: 135 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEQ 194 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R + + ++ EAA E+A RSRGTPR+A RLL+RVRDFAEV KTI+ E + AL Sbjct: 195 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 254 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +L +D G DQ D R L + + GGPVGI T++A + E + IE L EPY++Q GFI Sbjct: 255 KQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFI 314 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 TPRGR++ A+ LG+ IP Sbjct: 315 LLTPRGRMVTDKAYLQLGLPIP 336 >gi|57238406|ref|YP_179537.1| Holliday junction DNA helicase B [Campylobacter jejuni RM1221] gi|148926717|ref|ZP_01810397.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8486] gi|205356192|ref|ZP_03222959.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8421] gi|73621849|sp|Q5HT48|RUVB_CAMJR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|57167210|gb|AAW35989.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni RM1221] gi|145845081|gb|EDK22177.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8486] gi|205346035|gb|EDZ32671.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8421] gi|315058836|gb|ADT73165.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni S3] Length = 335 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 157/309 (50%), Positives = 224/309 (72%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + + GQ NL +FI AAK R E LDH+LF GP GLGKTTLA +++ E+G N Sbjct: 20 LRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS +EE+LYPAMED++LD+++G G Sbjct: 80 IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+ RL FY+ +L I+Q+ A Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++AA EIA RSR TPRIA RLL+RVRDFA+V + IT + A+ AL L ++++GFD Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +DLRYL ++ P+G+ +I+A LSE + IED+IEPY++ G+I+RT +GR+ Sbjct: 260 AMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASA 318 Query: 322 IAWQHLGID 330 ++ L ++ Sbjct: 319 KSYSALKLN 327 >gi|220907910|ref|YP_002483221.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7425] gi|254767423|sp|B8HY57|RUVB_CYAP4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|219864521|gb|ACL44860.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7425] Length = 370 Score = 332 bits (851), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 171/330 (51%), Positives = 228/330 (69%), Gaps = 2/330 (0%) Query: 5 EGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 +GLL+ VS E+ + +RP+ L ++ GQ E L++ I+AA++R E LDH+L GP Sbjct: 34 QGLLTAEVSPEERLSRTDDIRPQRLADYVGQKELKEVLQIAIQAAQSRREPLDHLLLYGP 93 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTT++ ++A E+GV+ + TS P + + D+ LL NL+ DVLFIDEIHRL+ + E Sbjct: 94 PGLGKTTISLILAAEMGVSCKVTSAPALERPRDIVGLLVNLKPGDVLFIDEIHRLARMTE 153 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LYPAMEDF+LD+ +G+G SAR+ + L FTL+ ATTRVG LT+PL+DRFG+ RL F Sbjct: 154 ELLYPAMEDFRLDITIGKGQSARTRSLPLPPFTLVGATTRVGSLTSPLRDRFGLIQRLRF 213 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE E+L I+ R A L +T AA EIA RSRGTPRIA RLL+RVRDFAEV A TIT Sbjct: 214 YEPEELSQIILRTASLLKTELTPSAALEIARRSRGTPRIANRLLKRVRDFAEVKAAGTIT 273 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA AL +D G D D R LT++ ++GGGPVG+ETI+A E IE++ EP Sbjct: 274 ETIASEALQLFNVDPCGLDWTDRRLLTVMIEHYGGGPVGLETIAAATGEEAQTIEEVYEP 333 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Y++Q G++ RTPRGR+ AW+HLG P Sbjct: 334 YLLQIGYLNRTPRGRVATLAAWKHLGYTPP 363 >gi|170017581|ref|YP_001728500.1| Holliday junction DNA helicase RuvB [Leuconostoc citreum KM20] gi|169804438|gb|ACA83056.1| Holliday junction DNA helicase RuvB [Leuconostoc citreum KM20] Length = 352 Score = 332 bits (850), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 166/319 (52%), Positives = 222/319 (69%), Gaps = 1/319 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N +++ ++SL RP+ L E+ GQ L V+I AAK R EALDHVL GPPGLGKTTL Sbjct: 29 NEAEQHDELSL-RPQFLREYIGQAALKEELSVYISAAKQREEALDHVLLFGPPGLGKTTL 87 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+GV+ ++TSGP I K GDL ALL LE D+LFIDEIHRL VEEI+Y AME Sbjct: 88 AMIIANEMGVHIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTNVEEIMYSAME 147 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+ +D+MVG+GP+AR+V L FTLI ATTR G+L+ PL+DRFGI +++Y E+L+ Sbjct: 148 DYFVDIMVGQGPTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIMSAMSYYTPEELQE 207 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R + + + E A EIA+RSRGTPRIA RLL+RVRDFA+V I R I D AL Sbjct: 208 IVVRSSDIFKAPIKPEGAYEIALRSRGTPRIANRLLKRVRDFAQVQGKAAIDRVIVDIAL 267 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +L +D G D+ D + L + + GGPVG+ T++A + E + +E ++EPY++Q GF+ Sbjct: 268 DKLRVDNRGLDETDHKLLDTMITYYQGGPVGLNTLAANIGEEAETLESMVEPYLLQIGFL 327 Query: 311 QRTPRGRLLMPIAWQHLGI 329 QRTPRGR++ A+ HL I Sbjct: 328 QRTPRGRVVTEAAYAHLNI 346 >gi|325567286|ref|ZP_08143953.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus casseliflavus ATCC 12755] gi|325158719|gb|EGC70865.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus casseliflavus ATCC 12755] Length = 333 Score = 332 bits (850), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 163/327 (49%), Positives = 220/327 (67%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD + + QE+ LRP+TL ++ GQ + L ++I+AAK R EALDHVL G Sbjct: 1 MDERIVSPESTEQEEIIEKSLRPQTLAQYIGQDKVKQELSIYIQAAKNREEALDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTT+A V+A E+ V ++TSGP + K GDL A+L L+ DVLFIDEIHRL + Sbjct: 61 PPGLGKTTMAMVIANEMQVQIKTTSGPAVEKPGDLIAILNELQPGDVLFIDEIHRLPRVA 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF +D+MVG+G +A V L FTL+ ATTR G+L+ PL+DRFGI + Sbjct: 121 EEMLYSAMEDFYVDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMQ 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +YE DLK IVQR A + + +E A EIA RSRGTPRIA RLL+RVRD+A+V I Sbjct: 181 YYEDHDLKEIVQRTASIFETDIVEEGAIEIARRSRGTPRIANRLLKRVRDYAQVQADGLI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 R +AD AL LA+D G D +D + + + + GGPVG+ TI+ + E + +ED+ E Sbjct: 241 DRTVADQALALLAVDHAGLDYIDQKLIRTMIELYQGGPVGLSTIAVNIGEETETVEDMYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328 P++IQ+GF++RT RGR+ P+A+ H G Sbjct: 301 PFLIQKGFLKRTSRGRIATPLAYDHFG 327 >gi|296111817|ref|YP_003622199.1| holliday junction DNA helicase RuvB [Leuconostoc kimchii IMSNU 11154] gi|295833349|gb|ADG41230.1| holliday junction DNA helicase RuvB [Leuconostoc kimchii IMSNU 11154] Length = 352 Score = 332 bits (850), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 161/308 (52%), Positives = 216/308 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ L V+I AAK R EALDHVL GPPGLGKTTLA ++A E+ V+ Sbjct: 39 LRPQFLREYIGQSALKEELDVYISAAKQREEALDHVLLFGPPGLGKTTLAMIIANEMAVH 98 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I K GDL ALL LE D+LFIDEIHRL +EEI+Y AMED+ +D+MVG+G Sbjct: 99 IKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTNIEEIMYSAMEDYFVDIMVGQG 158 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+V L FTLI ATTR G+L+ PL+DRFGI + +Y E+L+ IV R A + Sbjct: 159 PTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINSMAYYTPEELQEIVVRSADIFHA 218 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A E+A+RSRGTPRIA RLL+RVRDFA+V I + I D AL +L +D G D Sbjct: 219 PIKPQGAYEVALRSRGTPRIANRLLKRVRDFAQVQGKDAIDKGIVDIALNKLRVDNRGLD 278 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D ++L + + GGPVG+ TI+A + E + +E ++EPY++Q GF+QRTPRGR++ Sbjct: 279 ETDHKFLGTMIDYYNGGPVGLNTIAANIGEEAETLESMVEPYLLQIGFLQRTPRGRVVTE 338 Query: 322 IAWQHLGI 329 +A+QHL + Sbjct: 339 VAYQHLKV 346 >gi|293381580|ref|ZP_06627567.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus 214-1] gi|290921850|gb|EFD98865.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus 214-1] Length = 336 Score = 332 bits (850), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 167/322 (51%), Positives = 226/322 (70%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N ++ ++SL RP+TL+++ GQ + ++I+AA+ R EALDHVL GPPGLGKTTL Sbjct: 13 NPKEQQMELSL-RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 71 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A V+A ELGV+ +STSGP I KAGDL ALL++L+ DVLFIDEIHRL+ VEE+LY AME Sbjct: 72 AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 131 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+ +D+++GEG + +V + L FTLI ATT G L+ PL+DRFGI + +Y I++L+ Sbjct: 132 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEQ 191 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R + + ++ EAA E+A RSRGTPR+A RLL+RVRDFAEV KTI+ E + AL Sbjct: 192 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 251 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +L +D G DQ D R L + + GGPVGI T++A + E + IE L EPY++Q GFI Sbjct: 252 KQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFI 311 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 TPRGR++ A+ LG+ IP Sbjct: 312 LLTPRGRMVTDKAYLQLGLPIP 333 >gi|41407136|ref|NP_959972.1| Holliday junction DNA helicase B [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464703|ref|YP_882655.1| Holliday junction DNA helicase RuvB [Mycobacterium avium 104] gi|254775921|ref|ZP_05217437.1| Holliday junction DNA helicase RuvB [Mycobacterium avium subsp. avium ATCC 25291] gi|47606088|sp|P61535|RUVB_MYCPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231502|sp|A0QIB7|RUVB_MYCA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|41395487|gb|AAS03355.1| RuvB [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165990|gb|ABK66887.1| holliday junction DNA helicase RuvB [Mycobacterium avium 104] Length = 351 Score = 332 bits (850), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 165/320 (51%), Positives = 225/320 (70%), Gaps = 1/320 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + D D+SL RPR+L EF GQ L++ IE AK R DH+L GPPGLGKT+LA Sbjct: 20 GEGDIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILLSGPPGLGKTSLAM 78 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF Sbjct: 79 IIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAEEMLYLAMEDF 138 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 ++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++FYE +L+ ++ Sbjct: 139 RVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFYEPAELQQVL 198 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A + G+ + EAA EIA RSRGTPRIA RLLRRVRDFAEV ITR++A AAL Sbjct: 199 ARSAGILGIELGAEAAEEIARRSRGTPRIANRLLRRVRDFAEVRADGVITRDVAKAALAV 258 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 +D++G D+LD LT + R+FGGGPVG+ T++ + E +E++ EP++++ G + R Sbjct: 259 YDVDELGLDRLDRAVLTALTRSFGGGPVGVSTLAVAVGEEAATVEEVCEPFLVRAGMVAR 318 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ AW HLG+ P Sbjct: 319 TPRGRVATAQAWTHLGMVPP 338 >gi|302190966|ref|ZP_07267220.1| Holliday junction DNA helicase RuvB [Lactobacillus iners AB-1] gi|309805312|ref|ZP_07699363.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV 09V1-c] gi|309805989|ref|ZP_07700015.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV 03V1-b] gi|309809682|ref|ZP_07703538.1| Holliday junction DNA helicase RuvB [Lactobacillus iners SPIN 2503V10-D] gi|312870741|ref|ZP_07730848.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF 3008A-a] gi|312875204|ref|ZP_07735217.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF 2053A-b] gi|329919592|ref|ZP_08276581.1| Holliday junction DNA helicase RuvB [Lactobacillus iners SPIN 1401G] gi|308165388|gb|EFO67620.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV 09V1-c] gi|308167592|gb|EFO69745.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV 03V1-b] gi|308170042|gb|EFO72079.1| Holliday junction DNA helicase RuvB [Lactobacillus iners SPIN 2503V10-D] gi|311089311|gb|EFQ47742.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF 2053A-b] gi|311093753|gb|EFQ52090.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF 3008A-a] gi|328937397|gb|EGG33819.1| Holliday junction DNA helicase RuvB [Lactobacillus iners SPIN 1401G] Length = 334 Score = 332 bits (850), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%) Query: 2 MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ L S + E A LRP L ++ GQ + S + ++I+AAK R E+LDHVL Sbjct: 1 MTKDNLFSSESTPMEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTT+A V+A ELGV +STSGP I KAGDL ALL+ L+ DVLFIDEIHRL+ Sbjct: 61 GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI + Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y ++L+ I++R +++ + EAA E+A RSRGTPR+A RLL+R+RDFAEV + Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I+ AL +L +D G DQ+D + L ++ + GGPVGI+T++A + E + I ++ Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY++Q+GFI RTPRGR+ A+ LGI + R Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334 >gi|58336748|ref|YP_193333.1| Holliday junction DNA helicase RuvB [Lactobacillus acidophilus NCFM] gi|227903309|ref|ZP_04021114.1| Holliday junction DNA helicase B [Lactobacillus acidophilus ATCC 4796] gi|81311520|sp|Q5FLX2|RUVB_LACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|58254065|gb|AAV42302.1| helicase Holliday junction [Lactobacillus acidophilus NCFM] gi|227868938|gb|EEJ76359.1| Holliday junction DNA helicase B [Lactobacillus acidophilus ATCC 4796] Length = 349 Score = 331 bits (849), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 166/323 (51%), Positives = 226/323 (69%), Gaps = 1/323 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N +E ++SL RP+TL+++ GQ + ++I+AA+ R EALDHVL GPPGLGKTTL Sbjct: 26 NPEEEQMELSL-RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 84 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A V+A ELGV+ +STSGP I KAGDL ALL++L+ DVLFIDEIHRL+ VEE+LY AME Sbjct: 85 AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 144 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+ +D+++GEG + +V + L FTLI ATT G L+ PL+DRFGI + +Y +++L+ Sbjct: 145 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTVDELEK 204 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IVQR + + ++ EAA E+A RSRGTPR+A RLL+RVRDFAEV KTI+ AL Sbjct: 205 IVQRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLATTSDAL 264 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +L +D G DQ D + L + + GGPVGI T++A + E + IE L EPY++Q GFI Sbjct: 265 KQLQVDSEGLDQTDRKLLRTMIEGYNGGPVGIRTLAANIGEDMETIESLYEPYLLQNGFI 324 Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333 TPRGR++ A+ LG+ IP+ Sbjct: 325 LLTPRGRMVTDKAYLQLGLPIPN 347 >gi|182412102|ref|YP_001817168.1| Holliday junction DNA helicase RuvB [Opitutus terrae PB90-1] gi|177839316|gb|ACB73568.1| Holliday junction DNA helicase RuvB [Opitutus terrae PB90-1] Length = 345 Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 167/312 (53%), Positives = 221/312 (70%), Gaps = 1/312 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP T +FTGQ + L+V + AAK R EAL+H+L GPPGLGKTTLA ++ ELG N Sbjct: 27 LRPLTFADFTGQPKTVERLQVMVGAAKQRGEALNHILLSGPPGLGKTTLAFILGHELGKN 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ KAGDLA LLTNLE+ D+LFIDEIHR+ VEE LY AMEDF+LD+M+ +G Sbjct: 87 VRVTSGPVVEKAGDLAGLLTNLEEGDILFIDEIHRIPKTVEEYLYSAMEDFRLDIMIDQG 146 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+++L RFTL+ ATTR GLLT PL+ RF + RL++Y+ L++IV+R L + Sbjct: 147 PNARSVRLSLPRFTLVGATTRAGLLTAPLRSRFTLQTRLDYYDHATLESIVRRSCGLLKV 206 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V A EIA RSRGTPR+A L+ VRDFA+ IT+ +A AAL L ID G D Sbjct: 207 PVDQGGAHEIATRSRGTPRVANNLINFVRDFAQQRANGKITQPVAAAALELLEIDAAGLD 266 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L ++A N+GG PVGI TI+ + E + +E++ EP++IQ+G+IQRT GR+L P Sbjct: 267 EMDKRMLRVMAENYGGRPVGISTIAVAVGEESETLEEVHEPFLIQEGYIQRTREGRMLTP 326 Query: 322 IAWQHLGIDIPH 333 +Q +G+ PH Sbjct: 327 KGYQAVGLK-PH 337 >gi|300811582|ref|ZP_07092066.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497442|gb|EFK32480.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 336 Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 163/311 (52%), Positives = 222/311 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ +++V+I+AA+ R EALDHVL GPPGLGKTTLA V+A E GV+ Sbjct: 22 LRPQLLSQYIGQGHVKKDMEVYIQAARQRDEALDHVLLYGPPGLGKTTLAFVIANESGVS 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGP I +AGDL ALLT+LE DVLFIDEIHRL+ VEE+LY AMEDF +D++VGEG Sbjct: 82 LKSTSGPAIERAGDLVALLTDLEPGDVLFIDEIHRLAKPVEEVLYSAMEDFYIDIVVGEG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 + ++ + L FTLI ATT G L+ PL+DRFGI + +Y++EDL+ I+ R +++ Sbjct: 142 QTTHAIHLPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYQVEDLEKIILRSSEVFHT 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ +AA E+A RSRGTPR+A RLL+RVRDFAEV K I+ E AL +L +D G D Sbjct: 202 KISPQAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKEISLETTAMALKQLQVDSAGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q D + L + ++GGGPVGI T+++ + E R+ IE L EPY++Q GFI TPRGR++ Sbjct: 262 QTDRKLLRTMILSYGGGPVGIRTLASNIGEDRETIESLYEPYLLQNGFIVMTPRGRVVTQ 321 Query: 322 IAWQHLGIDIP 332 A+Q L + +P Sbjct: 322 KAYQQLNLPLP 332 >gi|256844551|ref|ZP_05550037.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus 125-2-CHN] gi|256613629|gb|EEU18832.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus 125-2-CHN] Length = 339 Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 167/322 (51%), Positives = 226/322 (70%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N ++ ++SL RP+TL+++ GQ + ++I+AA+ R EALDHVL GPPGLGKTTL Sbjct: 16 NPEEQQMELSL-RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 74 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A V+A ELGV+ +STSGP I KAGDL ALL++L+ DVLFIDEIHRL+ VEE+LY AME Sbjct: 75 AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 134 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+ +D+++GEG + +V + L FTLI ATT G L+ PL+DRFGI + +Y I++L+ Sbjct: 135 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGELSAPLRDRFGIVEHMQYYTIDELEQ 194 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R + + ++ EAA E+A RSRGTPR+A RLL+RVRDFAEV KTI+ E + AL Sbjct: 195 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 254 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +L +D G DQ D R L + + GGPVGI T++A + E + IE L EPY++Q GFI Sbjct: 255 KQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFI 314 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 TPRGR++ A+ LG+ IP Sbjct: 315 LLTPRGRMVTDKAYLQLGLPIP 336 >gi|297170678|gb|ADI21702.1| holliday junction resolvasome, helicase subunit [uncultured Verrucomicrobiales bacterium HF0130_14P10] Length = 347 Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 168/323 (52%), Positives = 223/323 (69%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 LS ++ ++D + LRP T E+FTGQ + LKV + AA R + L HVL GPPGLG Sbjct: 11 FLSESLERKDDADAALRPPTFEDFTGQAKTIERLKVIVGAASDREDPLKHVLLCGPPGLG 70 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A+EL R TSGPVI K GDLA LLTNL++ DVLFIDEIHRL VEE LY Sbjct: 71 KTTLAYIIAKELNREIRITSGPVIDKPGDLAGLLTNLQEGDVLFIDEIHRLPKTVEEYLY 130 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMEDF++D+M+ +GP+ARSV++ + RFTLI ATTRVGLLT P++ RF + RL++Y + Sbjct: 131 SAMEDFRIDIMIDQGPNARSVRLEIPRFTLIGATTRVGLLTAPMRSRFTLQTRLDYYGRD 190 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 DL TIV+R KL ++ A EIA R+RGTPRIA L+ RDFAE IT E+A Sbjct: 191 DLATIVKRSCKLLETPFDEDGAKEIAGRARGTPRIANNLIHFARDFAEQRSEGKITSEVA 250 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 AL L ID G D++D R L ++A N+ GGPVG+ T++ ++E +E++ EP++IQ Sbjct: 251 AQALELLEIDNNGLDEMDKRILRLMADNYRGGPVGLGTVAVAVNEEEHTLEEVHEPFLIQ 310 Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329 +G+IQRTP+GR L WQ +G+ Sbjct: 311 EGYIQRTPQGRALTAKGWQVIGL 333 >gi|309803616|ref|ZP_07697708.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV 11V1-d] gi|315653061|ref|ZP_07905989.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus iners ATCC 55195] gi|308164364|gb|EFO66619.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV 11V1-d] gi|315489596|gb|EFU79230.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus iners ATCC 55195] Length = 334 Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%) Query: 2 MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ L S + E A LRP L ++ GQ + S + ++I+AAK R E+LDHVL Sbjct: 1 MTKDNLFSGESTPMEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTT+A V+A ELGV +STSGP I KAGDL ALL+ L+ DVLFIDEIHRL+ Sbjct: 61 GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI + Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y ++L+ I++R +++ + EAA E+A RSRGTPR+A RLL+R+RDFAEV + Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I+ AL +L +D G DQ+D + L ++ + GGPVGI+T++A + E + I ++ Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY++Q+GFI RTPRGR+ A+ LGI + R Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334 >gi|309807402|ref|ZP_07701365.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV 01V1-a] gi|325913779|ref|ZP_08176140.1| Holliday junction DNA helicase RuvB [Lactobacillus iners UPII 60-B] gi|308169324|gb|EFO71379.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV 01V1-a] gi|325476979|gb|EGC80130.1| Holliday junction DNA helicase RuvB [Lactobacillus iners UPII 60-B] Length = 334 Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%) Query: 2 MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ L S + E A LRP L ++ GQ + S + ++I+AAK R E+LDHVL Sbjct: 1 MTKDNLFSSESTPMEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTT+A V+A ELGV +STSGP I KAGDL ALL+ L+ DVLFIDEIHRL+ Sbjct: 61 GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI + Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIIEHM 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y ++L+ I++R +++ + EAA E+A RSRGTPR+A RLL+R+RDFAEV + Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I+ AL +L +D G DQ+D + L ++ + GGPVGI+T++A + E + I ++ Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY++Q+GFI RTPRGR+ A+ LGI + R Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334 >gi|242310432|ref|ZP_04809587.1| holliday junction DNA helicase B [Helicobacter pullorum MIT 98-5489] gi|239522830|gb|EEQ62696.1| holliday junction DNA helicase B [Helicobacter pullorum MIT 98-5489] Length = 333 Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 163/297 (54%), Positives = 218/297 (73%), Gaps = 1/297 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP ++ GQ + NL+VFI AAK R + LDH+L GPPGLGKTTLA +++ E+ Sbjct: 20 LRPNNWSDYIGQEKLKKNLQVFINAAKKRNDTLDHILLFGPPGLGKTTLAHIISGEMNAP 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I KAGDLAA+LTNL + ++LFIDEIHRLS +EEILYPAMEDF+LD+++G G Sbjct: 80 IKVTAAPMIEKAGDLAAILTNLSEGEILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A++VKI+L RFTLI ATTR G+++NPL+DRFG+ R+ FYE E+L IVQ A Sbjct: 140 PAAQTVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQFYEKEELARIVQIAAIKLQK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRIA RLL+RVRDFAEVA IT+E AL L +++ GFD Sbjct: 200 ECSSDGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEGIITKERTQYALNELGVNEYGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318 +LDLR+L +I + G P+G+ T++A +SE IED+IEPY++ GF++RT RGR+ Sbjct: 260 ELDLRFLKIICES-RGRPIGLSTLAAAMSEDEGTIEDVIEPYLLINGFLERTARGRI 315 >gi|119356405|ref|YP_911049.1| Holliday junction DNA helicase RuvB [Chlorobium phaeobacteroides DSM 266] gi|166231481|sp|A1BDZ8|RUVB_CHLPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|119353754|gb|ABL64625.1| Holliday junction DNA helicase RuvB [Chlorobium phaeobacteroides DSM 266] Length = 346 Score = 331 bits (849), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 164/306 (53%), Positives = 217/306 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++FTGQ NL+VFI AAK R +ALDHVL GPPGLGKTTLA ++A E+G N Sbjct: 21 IRPLKMDDFTGQQRLTDNLRVFISAAKIRGDALDHVLLSGPPGLGKTTLANIIASEMGGN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP++ KAG+LA LLT+L DVLFIDEIHRL VEE LY AMEDF++D+M+ G Sbjct: 81 IKVTSGPMLDKAGNLAGLLTSLRKGDVLFIDEIHRLPAAVEEYLYSAMEDFRIDIMLDSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR+V++ + FTL+ ATTR GLLT+PL+ RFGI R ++Y E L+ I+ R + + G+ Sbjct: 141 PSARAVQLRIEPFTLVGATTRSGLLTSPLRARFGISSRFDYYPPELLERIILRASGILGI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 VT EAA EIA RSRGTPRIA RLLRR RDFA+VA + I +IA L L ID+ G D Sbjct: 201 GVTTEAAGEIAGRSRGTPRIANRLLRRARDFAQVADSFVINHDIAMTTLASLEIDEEGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + I F GGPVG+ +++ + E +D IE++ EPY+IQ G++ RTPRGR+ Sbjct: 261 DMDKKIMDTIVNKFNGGPVGVASLAVSVGEEQDTIEEVYEPYLIQAGYLARTPRGRVATR 320 Query: 322 IAWQHL 327 +A + Sbjct: 321 LALKRF 326 >gi|312880161|ref|ZP_07739961.1| Holliday junction DNA helicase subunit RuvB [Aminomonas paucivorans DSM 12260] gi|310783452|gb|EFQ23850.1| Holliday junction DNA helicase subunit RuvB [Aminomonas paucivorans DSM 12260] Length = 353 Score = 331 bits (849), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 166/321 (51%), Positives = 226/321 (70%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +++ D LRP TL+ F GQ L++F+ A++ R E LDH LF GPPGLGKTTLA + Sbjct: 21 KDEEDHLSLRPETLDSFIGQDSLKEKLRIFVAASRQRGEPLDHTLFYGPPGLGKTTLASI 80 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARE+G R T+GP + +AGDLAA+L+NL+ DVLFIDEIHRL + VEEILYPAMED+ Sbjct: 81 IAREMGGQLRITTGPALERAGDLAAILSNLQPHDVLFIDEIHRLPVTVEEILYPAMEDYN 140 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L ++VG+GP ARSV++ L RFTL+ ATTR+GL+T+PL+ RFGI +L+ Y+ DL IV Sbjct: 141 LCIVVGKGPLARSVRLQLPRFTLVGATTRLGLMTSPLRARFGIVEQLDLYDPRDLTKIVT 200 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 RGA++ G+ + ++A+ EI RSRGTPR+A RLLRRVRD A V+ I R +A +AL L Sbjct: 201 RGAEVLGVQIEEDASLEIGRRSRGTPRVALRLLRRVRDVAAVSGEAGIRRTVACSALDML 260 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D G D D + L + F GGPVG+ T++A L+E IED+ EP++IQ+GF++RT Sbjct: 261 GVDPEGLDDGDRKLLRAVVELFDGGPVGLSTLAAALNEDAQTIEDIYEPFLIQKGFLERT 320 Query: 314 PRGRLLMPIAWQHLGIDIPHR 334 PRGR + +LG + R Sbjct: 321 PRGRKATRGTFAYLGFEPSSR 341 >gi|217077920|ref|YP_002335638.1| Holliday junction DNA helicase RuvB [Thermosipho africanus TCF52B] gi|217037775|gb|ACJ76297.1| holliday junction DNA helicase RuvB [Thermosipho africanus TCF52B] Length = 336 Score = 331 bits (848), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 226/311 (72%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D+ +RP+ LEE+ GQ LK+ I A+K R EALDHVL VGPPGLGKTTLA +++ E Sbjct: 16 DVLTIRPQKLEEYIGQENIKKRLKLAINASKIRKEALDHVLLVGPPGLGKTTLAHIISNE 75 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +G N TSGP++ K GD+AA+L+NLE D+LFIDEIHR++ VEEILY AMEDFQ+D++ Sbjct: 76 MGTNIHITSGPILEKQGDVAAILSNLEYGDILFIDEIHRMNKSVEEILYTAMEDFQIDIL 135 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 +G+GPSARS++I+L FTL+ ATTR GLL++PL++RFG+ + L+FY +E+L I++R + Sbjct: 136 IGKGPSARSIRIDLQPFTLVGATTRSGLLSSPLRNRFGLIMELDFYTVEELSLIIKRAST 195 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 + + + ++AA +A RSRGTPRIA RLLRRVRD + V K I + + + L ID Sbjct: 196 VLNVEIDEDAAQLLAKRSRGTPRIALRLLRRVRDMSTVTEKKKIDVMMVEEIMELLGIDN 255 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G D++D + LT I + GGPVG+++++A + D+I ++ EPY++Q GF+ RT RGR Sbjct: 256 EGLDEVDRKILTTIIEVYQGGPVGLKSLAASVGLSEDSISEVYEPYLLQSGFLARTHRGR 315 Query: 318 LLMPIAWQHLG 328 ++ A++HLG Sbjct: 316 VVTSKAYKHLG 326 >gi|323465933|gb|ADX69620.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus helveticus H10] Length = 341 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 166/320 (51%), Positives = 223/320 (69%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S+E+A LRP+TL+++ GQ + ++I+AAK R EALDHVL GPPGLGKTTLA Sbjct: 19 SEEEAMELSLRPQTLDQYLGQKRVKKEMSIYIKAAKQRDEALDHVLLYGPPGLGKTTLAF 78 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 V+A ELGV+ +STSGP I KAGDL ALL++L+ DVLFIDEIHRL+ VEE+LY AMED+ Sbjct: 79 VIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAMEDY 138 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+++GEG + +V + L FTLI ATT L+ PL+DRFGI + +Y I++L+ IV Sbjct: 139 YIDIVIGEGQTTHAVHVPLPPFTLIGATTLAAQLSAPLRDRFGIVEHMQYYTIDELEKIV 198 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR + + ++ EAA E+A RSRGTPR+A R L+RVRDFAEV KTI+ + AL + Sbjct: 199 QRSSDVFHTSIAPEAAHELARRSRGTPRVANRFLKRVRDFAEVKGEKTISLATTEGALKQ 258 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G DQ D R L + + GGPVGI T++A + E + IE L EPY++Q GFI Sbjct: 259 LQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFILL 318 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR++ A+ LG+ +P Sbjct: 319 TPRGRMVTDKAYLQLGLPVP 338 >gi|161506975|ref|YP_001576929.1| Holliday junction DNA helicase RuvB [Lactobacillus helveticus DPC 4571] gi|172048185|sp|A8YTI2|RUVB_LACH4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|160347964|gb|ABX26638.1| Holliday junction DNA helicase [Lactobacillus helveticus DPC 4571] Length = 347 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 166/320 (51%), Positives = 223/320 (69%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S+E+A LRP+TL+++ GQ + ++I+AAK R EALDHVL GPPGLGKTTLA Sbjct: 25 SEEEAMELSLRPQTLDQYLGQKRVKKEMSIYIKAAKQRDEALDHVLLYGPPGLGKTTLAF 84 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 V+A ELGV+ +STSGP I KAGDL ALL++L+ DVLFIDEIHRL+ VEE+LY AMED+ Sbjct: 85 VIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAMEDY 144 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+++GEG + +V + L FTLI ATT G L+ PL+DRFGI + +Y I++L+ IV Sbjct: 145 YIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEKIV 204 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR + + ++ EAA E+A RSRGTPR+A R L+RVRDFAEV KTI+ + AL + Sbjct: 205 QRSSDVFHTSIAPEAAHELARRSRGTPRVANRFLKRVRDFAEVKGEKTISLATTEGALKQ 264 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G DQ D R L + + GGPVGI T++A + E + IE L EPY++Q GFI Sbjct: 265 LQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFILL 324 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 PRGR++ A+ LG+ +P Sbjct: 325 GPRGRMVTDKAYLQLGLPVP 344 >gi|75907231|ref|YP_321527.1| Holliday junction DNA helicase RuvB [Anabaena variabilis ATCC 29413] gi|97189907|sp|Q3MEF4|RUVB_ANAVT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|75700956|gb|ABA20632.1| Holliday junction DNA helicase subunit RuvB [Anabaena variabilis ATCC 29413] Length = 366 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 161/312 (51%), Positives = 218/312 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ ++ GQ + L + I+AAK+R E LDH+L GPPGLGKTT+A ++A E+GVN Sbjct: 49 IRPQKFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASEMGVN 108 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++ TS P + + D+ LL NL+ D+LFIDEIHRLS + EEILYPAMED++LD+ VG+G Sbjct: 109 YKITSAPALERPRDIVGLLVNLKPGDILFIDEIHRLSRMTEEILYPAMEDYRLDITVGKG 168 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SAR I LS+FTL+ ATTRVG LT+PL+DRFG+ +L FYE+++L IV R A+L Sbjct: 169 SSARIRSIPLSKFTLVGATTRVGALTSPLRDRFGLIQKLRFYEVDELSQIVLRSAQLLQT 228 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 VTD+ A EIA RSRGTPRIA RLL+RVRD+A+V +++ IA AL +D G D Sbjct: 229 QVTDDGATEIARRSRGTPRIANRLLKRVRDYAQVKSCTEVSQNIAAEALQLFQVDPCGLD 288 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L++I F GGPVG+ETI+A E IE++ EPY++Q G++ RTPRGR Sbjct: 289 WTDRRMLSVIIEQFNGGPVGLETIAAATGEDTQTIEEVYEPYLMQIGYLSRTPRGRTATK 348 Query: 322 IAWQHLGIDIPH 333 A++H+G P+ Sbjct: 349 AAYKHMGFTPPN 360 >gi|325911944|ref|ZP_08174347.1| Holliday junction DNA helicase RuvB [Lactobacillus iners UPII 143-D] gi|325476246|gb|EGC79409.1| Holliday junction DNA helicase RuvB [Lactobacillus iners UPII 143-D] Length = 334 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%) Query: 2 MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ L S + E A LRP L ++ GQ + S + ++I+AAK R E+LDHVL Sbjct: 1 MTKDNLFSGESTPMEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTT+A V+A ELGV +STSGP I KAGDL ALL+ L+ DVLFIDEIHRL+ Sbjct: 61 GPPGLGKTTMAFVIANELGVTVKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI + Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y ++L+ I++R +++ + EAA E+A RSRGTPR+A RLL+R+RDFAEV + Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I+ AL +L +D G DQ+D + L ++ + GGPVGI+T++A + E + I ++ Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY++Q+GFI RTPRGR+ A+ LGI + R Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334 >gi|259046889|ref|ZP_05737290.1| Holliday junction DNA helicase RuvB [Granulicatella adiacens ATCC 49175] gi|259036512|gb|EEW37767.1| Holliday junction DNA helicase RuvB [Granulicatella adiacens ATCC 49175] Length = 335 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 164/307 (53%), Positives = 218/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+++ GQ + L ++I+AA++R+EALDHVL GPPGLGKTTLA V+A EL V Sbjct: 23 LRPQTLQQYIGQQKVKEELAIYIQAARSRSEALDHVLLYGPPGLGKTTLAMVIANELEVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I + GDL ALL +LE DVLFIDEIHRL +VEE+LY AMEDF +D++VG+G Sbjct: 83 IKTTSGPAIERPGDLVALLNDLEAGDVLFIDEIHRLPRVVEEMLYSAMEDFFVDIVVGQG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A V L FTLI ATTR G L+ PL+DRFGI + +Y+ L IV+R A + Sbjct: 143 PTAHPVHFPLPPFTLIGATTRAGALSAPLRDRFGIVEHMEYYDEASLSEIVKRSANVFDS 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEAA EIA+RSRGTPRIA RLL+RVRDF++V I++EI AL L +D G D Sbjct: 203 EIKDEAALEIALRSRGTPRIANRLLKRVRDFSQVYEEGMISKEITQQALKVLRVDAKGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + LT + + GGPVG+ I+A +SE + IED+ EPY++Q GF++RT RGR++ P Sbjct: 263 HIDRKLLTAMIDLYDGGPVGLGAIAANISEDAETIEDMYEPYLLQIGFLKRTSRGRVVTP 322 Query: 322 IAWQHLG 328 + HLG Sbjct: 323 EGYAHLG 329 >gi|119716614|ref|YP_923579.1| Holliday junction DNA helicase RuvB [Nocardioides sp. JS614] gi|171704606|sp|A1SJA7|RUVB_NOCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|119537275|gb|ABL81892.1| Holliday junction DNA helicase subunit RuvB [Nocardioides sp. JS614] Length = 360 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 162/311 (52%), Positives = 217/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL+E GQV L + +EAA+ R A DHVL GPPGLGKTTLA ++A E+G Sbjct: 35 LRPRTLDEVVGQVRVRDQLGLVLEAARRRGRAPDHVLLSGPPGLGKTTLAMIIASEMGAP 94 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L+ + + DVLF+DEIHR+S EE+LY AMEDF++D+++G+G Sbjct: 95 LRLTSGPAITHAGDLAAILSGMNEGDVLFVDEIHRMSRPAEEMLYMAMEDFRVDVVIGKG 154 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + + FTL+ ATTR GLL PL+DRFG L FYE ++L IVQR A+L + Sbjct: 155 PGATAIPLEIPPFTLVGATTRAGLLPGPLRDRFGFTAHLEFYEPDELDLIVQRSARLLDV 214 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V + EIA RSRGTPRIA RLLRRVRDFA+V +T +A AL +D++G D Sbjct: 215 HVLPDGTAEIASRSRGTPRIANRLLRRVRDFAQVRADGVVTLPVAQDALDLYEVDQLGLD 274 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L ++ R FGGGPVGI T++ + E R+ +E++ EP++++ GF+ RTPRGR+ P Sbjct: 275 RLDRGVLDVLCRRFGGGPVGISTLAVAVGEERETVEEVAEPFLVRNGFLARTPRGRVATP 334 Query: 322 IAWQHLGIDIP 332 AW+HLG+ P Sbjct: 335 AAWEHLGLTAP 345 >gi|34558125|ref|NP_907940.1| Holliday junction DNA helicase RuvB [Wolinella succinogenes DSM 1740] gi|44888364|sp|Q7M879|RUVB_WOLSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|34483843|emb|CAE10840.1| HOLLIDAY JUNCTION DNA HELICASE [Wolinella succinogenes] Length = 335 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 164/297 (55%), Positives = 219/297 (73%), Gaps = 1/297 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +++ GQ + NL VFIEAAK R E LDH+LF GPPGLGKTTLA +++ E+G N Sbjct: 20 LRPSGWDDYIGQEKIKRNLGVFIEAAKRRGEGLDHILFFGPPGLGKTTLAHIISHEMGAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I KAGDLAA+LTNL + D+LFIDEIHRLS +EEILYPAMEDF+LD+++G G Sbjct: 80 IKVTTAPMIEKAGDLAAILTNLSEGDILFIDEIHRLSASIEEILYPAMEDFRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A++VKI+L RFTLI ATTR G+++ PL++RFG+ + FY IE+L I+ + Sbjct: 140 PAAQTVKIDLPRFTLIGATTRAGMISKPLRERFGMNFWMQFYNIEELSQIITLASIKLKK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 E+A EIA RSRGTPR+A RLLRRVRDFAEVA+ + I E A AL L ++ GFD Sbjct: 200 RCLLESAKEIARRSRGTPRVALRLLRRVRDFAEVANEEEIKIEQARYALHELGVNDHGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318 LDLRYL ++ ++ G PVG+ TI+A +SE IED++EPY++ G+++RT RGR+ Sbjct: 260 DLDLRYLRILVQS-KGRPVGLGTIAAAMSEDEGTIEDVVEPYLLAHGYLERTARGRV 315 >gi|295692270|ref|YP_003600880.1| holliday junction ATP-dependent DNA helicase ruvb [Lactobacillus crispatus ST1] gi|295030376|emb|CBL49855.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus crispatus ST1] Length = 339 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 166/322 (51%), Positives = 226/322 (70%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N ++ ++SL RP+TL+++ GQ + ++I+AA+ R EALDHVL GPPGLGKTTL Sbjct: 16 NPEEQQMELSL-RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 74 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A V+A ELGV+ +STSGP I K+GDL ALL++L+ DVLFIDEIHRL+ VEE+LY AME Sbjct: 75 AFVIANELGVHLKSTSGPAIEKSGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 134 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+ +D+++GEG + +V + L FTLI ATT G L+ PL+DRFGI + +Y I++L+ Sbjct: 135 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEQ 194 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R + + ++ EAA E+A RSRGTPR+A RLL+RVRDFAEV KTI+ E + AL Sbjct: 195 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 254 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +L +D G DQ D R L + + GGPVGI T++A + E + IE L EPY++Q GFI Sbjct: 255 KQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFI 314 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 TPRGR++ A+ LG+ IP Sbjct: 315 LLTPRGRMVTDKAYLQLGLPIP 336 >gi|227510190|ref|ZP_03940239.1| Holliday junction DNA helicase B [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190395|gb|EEI70462.1| Holliday junction DNA helicase B [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 339 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 164/318 (51%), Positives = 223/318 (70%), Gaps = 1/318 (0%) Query: 11 NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 NV+ ++ +I LRP+TL ++ GQ + + LKV+I+AAK R E+LDHVL GPPGLGKTT Sbjct: 12 NVNGDENNIEKTLRPQTLGDYIGQTDVKNELKVYIKAAKQREESLDHVLLYGPPGLGKTT 71 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA V+A E+GVN R+T+GP I K GDL +LL L DVLFIDEIHRL +VEE+LY AM Sbjct: 72 LAMVIANEMGVNIRTTTGPAIDKPGDLLSLLNELNPGDVLFIDEIHRLPKVVEEMLYSAM 131 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 EDF +D++VG+G A V L FTLI ATTR G+L+ PL+DRFGI +N+YE+ DL+ Sbjct: 132 EDFFVDIIVGQGSGAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVEHMNYYEVSDLE 191 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IVQR A + + + A EIA+RSRGTPR+A RLL+R+RDFA+V +I EI A Sbjct: 192 EIVQRTAGIFQIPILKSGAHEIALRSRGTPRVANRLLKRIRDFAQVFDKDSIDLEIVRYA 251 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L +L +D +G D D++ L + + GGPVG++T++A + E D I ++ EPY++Q G Sbjct: 252 LEKLKVDDLGLDATDIKLLRTMIDYYDGGPVGLKTLAANIGEETDTIAEMYEPYLLQIGL 311 Query: 310 IQRTPRGRLLMPIAWQHL 327 I+RT RGR + P ++HL Sbjct: 312 IKRTARGRRVTPKGYEHL 329 >gi|237785620|ref|YP_002906325.1| Holliday junction DNA helicase RuvB [Corynebacterium kroppenstedtii DSM 44385] gi|237758532|gb|ACR17782.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM 44385] Length = 374 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 164/324 (50%), Positives = 222/324 (68%), Gaps = 1/324 (0%) Query: 11 NVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 +DAD L LRPR+L+EF GQ + L++ + AKAR DH+L GPPGLGKTT Sbjct: 44 TAQSDDADAELSLRPRSLDEFIGQSKVREQLELVLSGAKARRVVPDHILLAGPPGLGKTT 103 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 +A ++A+E+G + R TSGP + K GDLAA+L+NL + DVLFIDEIHR++ EE+LY AM Sbjct: 104 MAMIIAQEMGTSLRMTSGPALEKTGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMAM 163 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 EDF++D++VG+GP A S+ ++L FTL+ ATTR G+LT PL+DRFG ++ FY DL Sbjct: 164 EDFRIDVIVGKGPGATSIPLDLPPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYSAADLT 223 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 +V R A+L + + +AA EIA RSRGTPRIA RLLRRVRD+A+V IT E A AA Sbjct: 224 KVVTRAARLLDIDIKADAAKEIASRSRGTPRIANRLLRRVRDYADVHSGGVITVEAAKAA 283 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 LL +D+ G D+LD L + R GGGPVG+ T++ + E +E++ EPY+I+ G Sbjct: 284 LLVFDVDEKGLDRLDRAVLDALVRGHGGGPVGVSTLALAVGEEPTTVEEVCEPYLIRAGM 343 Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333 I RTPRGR+ AW+H G++ P Sbjct: 344 IARTPRGRVATAEAWKHQGLEPPE 367 >gi|262202232|ref|YP_003273440.1| Holliday junction DNA helicase RuvB [Gordonia bronchialis DSM 43247] gi|262085579|gb|ACY21547.1| Holliday junction DNA helicase RuvB [Gordonia bronchialis DSM 43247] Length = 363 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 166/335 (49%), Positives = 228/335 (68%), Gaps = 5/335 (1%) Query: 3 DREGLLSRNVS----QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 DRE R VS + D D+ LRPR+L EF GQ C L++ + AK R DH+ Sbjct: 5 DREFTEDREVSALPVRSDGDLDAGLRPRSLAEFIGQPRVCEQLELVLHGAKGRGGTPDHI 64 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKT+LA ++A E+G R TSGP + +AGDLAA+L+NL + DVLFIDEIHR+ Sbjct: 65 LLSGPPGLGKTSLAMIIAAEMGAAIRVTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRI 124 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 + EE+LY AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG Sbjct: 125 ARPAEEMLYLAMEDFRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGSLTGPLRDRFGFT 184 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 + FY+ +L +++R A + G+ + D+AA EIA RSRGTPRIA RLLRRVRD+AEV Sbjct: 185 AHMEFYDTTELVHVLRRSAGILGIVLGDDAASEIASRSRGTPRIANRLLRRVRDYAEVRG 244 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 TIT + A AAL +D++GFD+LD L + R FGGGPVG+ T++ + E +E Sbjct: 245 DGTITVDTARAALAVYDVDELGFDRLDRAVLNALIRAFGGGPVGVSTLAVAVGEEPATVE 304 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++ EP++++ G + RTPRGR+ AW HLG+ P Sbjct: 305 EVCEPFLVRAGMVARTPRGRVATAAAWHHLGLTPP 339 >gi|260102900|ref|ZP_05753137.1| crossover junction endoribonuclease subunit B [Lactobacillus helveticus DSM 20075] gi|260083289|gb|EEW67409.1| crossover junction endoribonuclease subunit B [Lactobacillus helveticus DSM 20075] gi|328462818|gb|EGF34685.1| Holliday junction DNA helicase RuvB [Lactobacillus helveticus MTCC 5463] Length = 338 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 166/320 (51%), Positives = 223/320 (69%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S+E+A LRP+TL+++ GQ + ++I+AAK R EALDHVL GPPGLGKTTLA Sbjct: 16 SEEEAMELSLRPQTLDQYLGQKRVKKEMSIYIKAAKQRDEALDHVLLYGPPGLGKTTLAF 75 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 V+A ELGV+ +STSGP I KAGDL ALL++L+ DVLFIDEIHRL+ VEE+LY AMED+ Sbjct: 76 VIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAMEDY 135 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +D+++GEG + +V + L FTLI ATT G L+ PL+DRFGI + +Y I++L+ IV Sbjct: 136 YIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEKIV 195 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 QR + + ++ EAA E+A RSRGTPR+A R L+RVRDFAEV KTI+ + AL + Sbjct: 196 QRSSDVFHTSIAPEAAHELARRSRGTPRVANRFLKRVRDFAEVKGEKTISLATTEGALKQ 255 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G DQ D R L + + GGPVGI T++A + E + IE L EPY++Q GFI Sbjct: 256 LQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFILL 315 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 PRGR++ A+ LG+ +P Sbjct: 316 GPRGRMVTDKAYLQLGLPVP 335 >gi|225851290|ref|YP_002731524.1| holliday junction DNA helicase RuvB [Persephonella marina EX-H1] gi|225646422|gb|ACO04608.1| holliday junction DNA helicase RuvB [Persephonella marina EX-H1] Length = 321 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 162/304 (53%), Positives = 222/304 (73%), Gaps = 1/304 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E DI L RP++++++ GQ E +K+F++A+K + LDH+L GPPGLGKT+LAQV Sbjct: 6 EESFDIDL-RPKSIDDYIGQDEVKKQIKIFVDASKKTGKTLDHILIGGPPGLGKTSLAQV 64 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +ARELG N TSGPV+ K GD+A +L++LE+ D+LFIDEIHRL+ VEE LYPAMEDF Sbjct: 65 IARELGKNIVFTSGPVLEKKGDIAGILSSLEEGDILFIDEIHRLNPSVEEALYPAMEDFC 124 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD+++G+G S+RSV+I++ FTLI ATTR G+LT+PL RFGI + +++Y+ + L IV Sbjct: 125 LDIIIGKGSSSRSVRIDIPPFTLIGATTRSGMLTSPLISRFGIILHIDYYDTDSLTRIVL 184 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R AK+ G+ +T+ A EIA RSRGTPRIA R L+RV DFA V T+T + A AL L Sbjct: 185 RSAKILGIKITENGAREIARRSRGTPRIANRFLKRVYDFAVVKKDGTVTEDTAREALDFL 244 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 ID G D D +YL +I F G PVG+ T+S+ LSE R IE++IEP++++ GFI+RT Sbjct: 245 GIDSYGLDSRDRKYLQIIIEKFNGKPVGLNTLSSALSEDRYTIEEIIEPFLLRSGFIERT 304 Query: 314 PRGR 317 P+GR Sbjct: 305 PKGR 308 >gi|312872871|ref|ZP_07732933.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF 2062A-h1] gi|312873748|ref|ZP_07733793.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF 2052A-d] gi|311090746|gb|EFQ49145.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF 2052A-d] gi|311091605|gb|EFQ49987.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF 2062A-h1] Length = 334 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%) Query: 2 MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M ++ L S + E A LRP L ++ GQ + S + ++I+AAK R E+LDHVL Sbjct: 1 MTKDNLFSGESTPVEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTT+A V+A ELGV +STSGP I KAGDL ALL+ L+ DVLFIDEIHRL+ Sbjct: 61 GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI + Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y ++L+ I++R +++ + EAA E+A RSRGTPR+A RLL+R+RDFAEV + Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I+ AL +L +D G DQ+D + L ++ + GGPVGI+T++A + E + I ++ Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 EPY++Q+GFI RTPRGR+ A+ LGI + R Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334 >gi|81299645|ref|YP_399853.1| Holliday junction DNA helicase RuvB [Synechococcus elongatus PCC 7942] gi|97190395|sp|Q31Q03|RUVB_SYNE7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|81168526|gb|ABB56866.1| Holliday junction DNA helicase subunit RuvB [Synechococcus elongatus PCC 7942] Length = 375 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 166/312 (53%), Positives = 214/312 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ E L + I AAK+R E+LDH+L GPPGLGKTT+A V+A E+GV Sbjct: 48 IRPQRLADYIGQPELKDVLGIAIAAAKSRQESLDHLLLYGPPGLGKTTMALVLATEMGVQ 107 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R T+ P + + D+ LL NL+ DVLFIDEIHRL + EEILYPAMEDF+LD+ +G+G Sbjct: 108 CRITTAPALERPRDIVGLLVNLQPGDVLFIDEIHRLPKVTEEILYPAMEDFRLDITIGKG 167 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SAR+ I L FTL+ ATT++G LT+PL+DRFG+ RL FYE+E L IVQR A+L Sbjct: 168 QSARTRSITLQPFTLVGATTQIGALTSPLRDRFGLVQRLRFYEVEALTDIVQRTARLLNT 227 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA RSRGTPRIA RLLRRVRD+A V IT IA AL +D G D Sbjct: 228 PLDQAGAEEIAKRSRGTPRIANRLLRRVRDYAAVKAPGPITGAIAATALELYNVDPCGLD 287 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L+ + NFGGGPVG+ET++A E +E++ EPY++Q G++QRTPRGR+ P Sbjct: 288 WTDRRLLSHLIENFGGGPVGLETLAAATGEDAQTVEEVYEPYLLQIGYLQRTPRGRVATP 347 Query: 322 IAWQHLGIDIPH 333 AW+HLG + P Sbjct: 348 AAWRHLGYEPPQ 359 >gi|17230386|ref|NP_486934.1| Holliday junction DNA helicase RuvB [Nostoc sp. PCC 7120] gi|20140065|sp|Q8YT32|RUVB_ANASP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|17131988|dbj|BAB74593.1| Holliday junction DNA helicase [Nostoc sp. PCC 7120] Length = 366 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 161/312 (51%), Positives = 218/312 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ ++ GQ + L + I+AAK+R E LDH+L GPPGLGKTT+A ++A E+GVN Sbjct: 49 IRPQRFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASEMGVN 108 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++ TS P + + D+ LL NL+ D+LFIDEIHRLS + EEILYPAMED++LD+ VG+G Sbjct: 109 YKITSAPALERPRDIVGLLVNLKPGDILFIDEIHRLSRMTEEILYPAMEDYRLDITVGKG 168 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SAR I LS+FTL+ ATTRVG LT+PL+DRFG+ +L FYE+++L IV R A+L Sbjct: 169 SSARIRSIPLSKFTLVGATTRVGALTSPLRDRFGLIQKLRFYEVDELSQIVLRSAQLLQT 228 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 VTD+ A EIA RSRGTPRIA RLL+RVRD+A+V +++ IA AL +D G D Sbjct: 229 QVTDDGATEIARRSRGTPRIANRLLKRVRDYAQVKSCAEVSQNIAAEALQLFQVDPCGLD 288 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L++I F GGPVG+ETI+A E IE++ EPY++Q G++ RTPRGR Sbjct: 289 WTDRRMLSVIIEQFNGGPVGLETIAAATGEDTQTIEEVYEPYLMQIGYLSRTPRGRTATK 348 Query: 322 IAWQHLGIDIPH 333 A++H+G P+ Sbjct: 349 AAYKHMGFTPPN 360 >gi|86150115|ref|ZP_01068343.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152906|ref|ZP_01071111.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni HB93-13] gi|88596151|ref|ZP_01099388.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni 84-25] gi|121612638|ref|YP_001001020.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni 81-176] gi|167005923|ref|ZP_02271681.1| Holliday junction DNA helicase B [Campylobacter jejuni subsp. jejuni 81-176] gi|218562971|ref|YP_002344750.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|20140318|sp|Q9PMT7|RUVB_CAMJE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231480|sp|A1W0X9|RUVB_CAMJJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|85839561|gb|EAQ56822.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni CF93-6] gi|85843791|gb|EAQ61001.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249952|gb|EAQ72911.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni 81-176] gi|88190992|gb|EAQ94964.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni 84-25] gi|112360677|emb|CAL35474.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926582|gb|ADC28934.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni IA3902] gi|315928097|gb|EFV07416.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 335 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 157/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + + GQ NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E+ N Sbjct: 20 LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS +EE+LYPAMED++LD+++G G Sbjct: 80 IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+ RL FY+ +L I+Q+ A Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++AA EIA RSR TPRIA RLL+RVRDFA+V + IT + A+ AL L ++++GFD Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +DLRYL ++ P+G+ +I+A LSE + IED+IEPY++ G+I+RT +GR+ Sbjct: 260 AMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASA 318 Query: 322 IAWQHLGID 330 ++ L ++ Sbjct: 319 KSYSALKLN 327 >gi|15644476|ref|NP_229528.1| Holliday junction DNA helicase RuvB [Thermotoga maritima MSB8] gi|2498878|sp|Q56313|RUVB_THEMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|15825804|pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch Migration Motor gi|4982307|gb|AAD36795.1|AE001812_5 Holliday junction DNA helicase [Thermotoga maritima MSB8] gi|1063668|gb|AAB03727.1| RuvB protein [Thermotoga maritima] Length = 334 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 161/318 (50%), Positives = 220/318 (69%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D+ + LRP++L+EF GQ L + +EAAK R E LDHVL GPPGLGKTTLA ++A Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 EL N TSGPV+ K GD+AA+LT+LE DVLFIDEIHRL+ VEE+LY A+EDFQ+D Sbjct: 73 SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +M+G+GPSA+S++I++ FTL+ ATTR GLL++PL+ RFGI + L+FY +++LK I++R Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRA 192 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A L + + D AA IA RSRGTPRIA RL +RVRD V A I +I + L I Sbjct: 193 ASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D G D+ D + L I + GGPVG+ ++A L D + ++ EPY++Q GF+ RTPR Sbjct: 253 DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312 Query: 316 GRLLMPIAWQHLGIDIPH 333 GR++ A++HL ++P Sbjct: 313 GRIVTEKAYKHLKYEVPE 330 >gi|46198346|ref|YP_004013.1| Holliday junction DNA helicase B [Thermus thermophilus HB27] gi|47606090|sp|P61537|RUVB_THET2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|46195968|gb|AAS80386.1| holliday junction DNA helicase ruvB [Thermus thermophilus HB27] Length = 336 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 179/332 (53%), Positives = 234/332 (70%), Gaps = 4/332 (1%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M R G+ +S D LRP+TL+E+ GQ L+V++EAAKAR E L+H+L G Sbjct: 1 MRRTGI---RLSWRSVDDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFG 57 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSII 120 PPGLGKTTLA V+A ELGVN R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS Sbjct: 58 PPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQ 117 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE LYPAMEDF +D+++G+GP+AR++++ L RFTLI ATTR GL+T PL RFGI L Sbjct: 118 AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHL 177 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y E+L V R A+L G+ +T+EAA EI RSRGT R+A RL RRVRDFA+VA + Sbjct: 178 EYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEV 237 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ITRE A AL L +D++G ++ D L ++ FGGGPVG+ T++ LSE +E++ Sbjct: 238 ITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVH 297 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+I+QG ++RTPRGR+ +A++HLG P Sbjct: 298 EPYLIRQGLLKRTPRGRVATELAYRHLGYPPP 329 >gi|116513151|ref|YP_812058.1| Holliday junction DNA helicase B [Lactococcus lactis subsp. cremoris SK11] gi|123025084|sp|Q02VS7|RUVB_LACLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116108805|gb|ABJ73945.1| Holliday junction DNA helicase subunit RuvB [Lactococcus lactis subsp. cremoris SK11] Length = 333 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 163/323 (50%), Positives = 224/323 (69%), Gaps = 1/323 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +L++ +ED I LRP+ ++ GQ + L++FI+AAK R E LDHVL GPPGL Sbjct: 4 ILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGL 63 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTT+A V+A ELGVN + T+GP I K GDL A+L LE DVLFIDEIHR+ + VEE+L Sbjct: 64 GKTTMAFVIANELGVNIKQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVL 123 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF +D+M+G G +RSV ++L FTL+ ATTR G+L+NPL+ RFGI + +Y+ Sbjct: 124 YSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGISSHMEYYQE 183 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 DL+ IV+R A + + V D AA EIA+RSRGTPRIA RLL+RVRDFA++ + + I Sbjct: 184 RDLEEIVKRTADIFEVEVIDNAAIEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVDKAI 243 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D AL L +D G D +D + L + + GGPVGI T++ ++E R+ +ED+ EPY+I Sbjct: 244 TDKALTILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLI 303 Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328 Q+GF+ RT +GR + A++HLG Sbjct: 304 QKGFLMRTKQGRKVTQRAYEHLG 326 >gi|42523917|ref|NP_969297.1| Holliday junction DNA helicase B [Bdellovibrio bacteriovorus HD100] gi|47606082|sp|P61529|RUVB_BDEBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|39576124|emb|CAE80290.1| Holliday junction DNA helicase RuvB [Bdellovibrio bacteriovorus HD100] Length = 329 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 160/302 (52%), Positives = 219/302 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ E+F GQ + LKVF+ AAK R E+LDHVL GPPGLGKTTL++++A ++G Sbjct: 20 LRPQKFEDFPGQDDVKEKLKVFVAAAKHRGESLDHVLLCGPPGLGKTTLSKIIANDMGAE 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P I K GDLAA+LT+L+ VLFIDEIHRLS VEE LY AMED+ +D++ GEG Sbjct: 80 IKMTSAPAIDKKGDLAAILTSLKPHSVLFIDEIHRLSRHVEEYLYTAMEDYYIDIVTGEG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ARS+K L+ FTL+ ATTR GLL P +DRFGI RL FY+ + L+ I+ R A++ + Sbjct: 140 LGARSMKFTLAPFTLVGATTRAGLLNPPFRDRFGIVERLQFYDKDALRQILMRSAEILKV 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E A E+A RSRGTPR+A RLL+RVRD+A+V ++++IA AL +L +D+ G D Sbjct: 200 EIDEEGAEEVARRSRGTPRVANRLLKRVRDYAQVKGNGVVSKDIAVYALNQLGVDQYGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D R L++I + GGPVGI+TI+A LSE RD +E++ EP++IQ+GFIQ+T RGR++ Sbjct: 260 LMDRRILSLIQDKYAGGPVGIDTIAAALSEERDTLEEVYEPFLIQEGFIQKTQRGRVITE 319 Query: 322 IA 323 A Sbjct: 320 FA 321 >gi|326329830|ref|ZP_08196150.1| holliday junction DNA helicase RuvB [Nocardioidaceae bacterium Broad-1] gi|325952416|gb|EGD44436.1| holliday junction DNA helicase RuvB [Nocardioidaceae bacterium Broad-1] Length = 360 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 163/328 (49%), Positives = 226/328 (68%), Gaps = 4/328 (1%) Query: 9 SRNVSQEDADI----SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 S +++ D D + LRP++L+E GQ L + +EAA+ R A DHVL GPPG Sbjct: 16 SLTIAEADGDDRAVEAALRPKSLDELIGQQRVREQLSLVLEAARQRERAPDHVLLSGPPG 75 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A E+ R TSGP I AGDLAA+L+ L + +VLF+DEIHR+S EE+ Sbjct: 76 LGKTTLAMIIAAEMSAPLRITSGPAITHAGDLAAILSGLNEGEVLFVDEIHRMSRPAEEM 135 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LY AMEDF++D+++G+GP A ++ I+L FTL+ ATTR GLL PL+DRFG L Y+ Sbjct: 136 LYLAMEDFRVDVVIGKGPGATAIPIDLPPFTLVGATTRAGLLPGPLRDRFGFTGHLELYD 195 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 DL+ IV+R A L + + D+ A EIA RSRGTPRIA RLLRRVRD+A+V T+T++ Sbjct: 196 PADLELIVRRSAGLLEVTLRDDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGTVTQQ 255 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A AL +D +G D+LDL L + R FGGGPVGI T++ + E R+ +E++ EP++ Sbjct: 256 VAQKALDLYEVDPLGLDRLDLAVLDALCRRFGGGPVGISTLAVAVGEERETVEEVAEPFL 315 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++ GF+ RTPRGR+ P AW+HLG+ +P Sbjct: 316 VRSGFLARTPRGRVATPAAWEHLGLPVP 343 >gi|259501310|ref|ZP_05744212.1| crossover junction endoribonuclease subunit B [Lactobacillus iners DSM 13335] gi|259167280|gb|EEW51775.1| crossover junction endoribonuclease subunit B [Lactobacillus iners DSM 13335] Length = 321 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 163/313 (52%), Positives = 221/313 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L ++ GQ + S + ++I+AAK R E+LDHVL GPPGLGKTT+A V+A ELGV Sbjct: 9 LRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLYGPPGLGKTTMAFVIANELGVT 68 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGP I KAGDL ALL+ L+ DVLFIDEIHRL+ VEEILY AMEDF +D+MVGEG Sbjct: 69 LKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKTVEEILYSAMEDFYVDIMVGEG 128 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +A +V + LS FTLI ATTR G L+ PL+DRFGI + +Y ++L+ I++R +++ Sbjct: 129 SAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHMQYYSEDELQQIIERSSRVLET 188 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPR+A RLL+R+RDFAEV +I+ AL +L +D G D Sbjct: 189 GINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETSISLLTTKHALAKLEVDDEGLD 248 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q+D + L ++ + GGPVGI+T++A + E + I ++ EPY++Q+GFI RTPRGR+ Sbjct: 249 QIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVYEPYLLQKGFISRTPRGRVANA 308 Query: 322 IAWQHLGIDIPHR 334 A+ LGI + R Sbjct: 309 KAYVQLGISLDTR 321 >gi|254557083|ref|YP_003063500.1| Holliday junction DNA helicase B [Lactobacillus plantarum JDM1] gi|300768016|ref|ZP_07077922.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181077|ref|YP_003925205.1| Holliday junction DNA helicase B [Lactobacillus plantarum subsp. plantarum ST-III] gi|254046010|gb|ACT62803.1| Holliday junction DNA helicase B [Lactobacillus plantarum JDM1] gi|300494365|gb|EFK29527.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046568|gb|ADN99111.1| Holliday junction DNA helicase B [Lactobacillus plantarum subsp. plantarum ST-III] Length = 336 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 172/334 (51%), Positives = 225/334 (67%), Gaps = 4/334 (1%) Query: 2 MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 MD + LLS + + +D + SL LRP+TL ++ GQ L V+IEAA+ R E+LDHVL Sbjct: 1 MDDDKLLSGDKA-DDEEASLEKSLRPQTLAQYIGQARVKHELGVYIEAARKREESLDHVL 59 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA V+A E+ VN R+TSGP I K GDL ALL LE D+LFIDEIHRL Sbjct: 60 LYGPPGLGKTTLAMVIANEMQVNIRTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLP 119 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 IVEE+LY AMEDF +D++VG+GP+A V L FTLI ATTR G+L+ PL+DRFGI Sbjct: 120 KIVEEMLYSAMEDFFVDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 179 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 + +YE+ DL+ IV+R A + ++ A EIA RSRGTPRIA RL +R+RDFAEVA Sbjct: 180 HMAYYEVADLEDIVKRTADIFQTSIKPSGAHEIARRSRGTPRIANRLFKRIRDFAEVADQ 239 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 I I +L L +D G D+ D + L + + GGPVG+ TI+A + E D I + Sbjct: 240 DAIDEAIVARSLTYLRVDDAGLDETDNKLLRTMLEYYDGGPVGLATIAANIGEETDTIAE 299 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++EPY++Q GF++RT RGR++ +QHLG P Sbjct: 300 VVEPYLLQIGFLKRTQRGRVVTIKGYQHLGFPYP 333 >gi|183982125|ref|YP_001850416.1| Holliday junction DNA helicase RuvB [Mycobacterium marinum M] gi|238690933|sp|B2HN63|RUVB_MYCMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|183175451|gb|ACC40561.1| Holliday junction DNA helicase RuvB [Mycobacterium marinum M] Length = 345 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 163/330 (49%), Positives = 229/330 (69%), Gaps = 1/330 (0%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 +RE + V D D+SL RPR+L EF GQ L++ I+ AK R DH+L GP Sbjct: 7 EREVSPALTVGDGDVDVSL-RPRSLREFIGQPRVREQLQLVIQGAKNRGGTPDHILLSGP 65 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ E Sbjct: 66 PGLGKTSLAMIIAAELGSSLRMTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 125 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG ++F Sbjct: 126 EMLYLAMEDFRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 185 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE +L+ ++ R A + G+ + +A EIA RSRGTPRIA RLLRRVRDFAEV IT Sbjct: 186 YEPAELERVLVRSAGILGIQLGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVIT 245 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 R++A AAL +D++G D+LD L+ + R+F GGPVG+ T++ + E +E++ EP Sbjct: 246 RDVAKAALAVYDVDELGLDRLDRAVLSALTRSFSGGPVGVSTLAVAVGEEASTVEEVCEP 305 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++ G + RTPRGR+ +AW HLG+ P Sbjct: 306 FLVRAGMVARTPRGRVATALAWTHLGMTPP 335 >gi|24987363|pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii Length = 318 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 174/312 (55%), Positives = 227/312 (72%), Gaps = 1/312 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+E+ GQ L+V++EAAKAR E L+H+L GPPGLGKTTLA V+A ELGVN Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS EE LYPAMEDF +D+++G+ Sbjct: 66 LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 125 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR++++ L RFTLI ATTR GL+T PL RFGI L +Y E+L V R A+L G Sbjct: 126 GPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG 185 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + +T+EAA EI RSRGT R+A RL RRVRDFA+VA + ITRE A AL L +D++G Sbjct: 186 VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGL 245 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 ++ D L ++ FGGGPVG+ T++ LSE +E++ EPY+I+QG ++RTPRGR+ Sbjct: 246 EKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVAT 305 Query: 321 PIAWQHLGIDIP 332 +A++HLG P Sbjct: 306 ELAYRHLGYPPP 317 >gi|28378878|ref|NP_785770.1| Holliday junction DNA helicase B [Lactobacillus plantarum WCFS1] gi|38258512|sp|Q88V03|RUVB_LACPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|28271715|emb|CAD64621.1| holliday junction DNA helicase RuvB [Lactobacillus plantarum WCFS1] Length = 336 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 172/334 (51%), Positives = 225/334 (67%), Gaps = 4/334 (1%) Query: 2 MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 MD + LLS + + +D + SL LRP+TL ++ GQ L V+IEAA+ R E+LDHVL Sbjct: 1 MDDDKLLSGDKA-DDEEASLEKSLRPQTLAQYIGQARVKHELGVYIEAARKREESLDHVL 59 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA V+A E+ VN R+TSGP I K GDL ALL LE D+LFIDEIHRL Sbjct: 60 LYGPPGLGKTTLAMVIANEMQVNIRTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLP 119 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 IVEE+LY AMEDF +D++VG+GP+A V L FTLI ATTR G+L+ PL+DRFGI Sbjct: 120 KIVEEMLYSAMEDFFVDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 179 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 + +YE+ DL+ IV+R A + ++ A EIA RSRGTPRIA RL +R+RDFAEVA Sbjct: 180 HMAYYEVADLEDIVKRTADIFQTSIKPSGAHEIARRSRGTPRIANRLFKRIRDFAEVADQ 239 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 I I +L L +D G D+ D + L + + GGPVG+ TI+A + E D I + Sbjct: 240 DAIDEPIVARSLTYLRVDDAGLDETDNKLLRTMLEYYDGGPVGLATIAANIGEETDTIAE 299 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++EPY++Q GF++RT RGR++ +QHLG P Sbjct: 300 VVEPYLLQIGFLKRTQRGRVVTIKGYQHLGFPYP 333 >gi|148270159|ref|YP_001244619.1| Holliday junction DNA helicase RuvB [Thermotoga petrophila RKU-1] gi|170288886|ref|YP_001739124.1| Holliday junction DNA helicase RuvB [Thermotoga sp. RQ2] gi|281412499|ref|YP_003346578.1| Holliday junction DNA helicase RuvB [Thermotoga naphthophila RKU-10] gi|166231566|sp|A5ILH0|RUVB_THEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238688750|sp|B1LAU3|RUVB_THESQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|147735703|gb|ABQ47043.1| Holliday junction DNA helicase subunit RuvB [Thermotoga petrophila RKU-1] gi|170176389|gb|ACB09441.1| Holliday junction DNA helicase RuvB [Thermotoga sp. RQ2] gi|281373602|gb|ADA67164.1| Holliday junction DNA helicase RuvB [Thermotoga naphthophila RKU-10] Length = 334 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 161/318 (50%), Positives = 219/318 (68%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D+ + LRP++L+EF GQ L + +EAAK R E LDHVL GPPGLGKTTLA ++A Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 EL N TSGPV+ K GD+AA+LT+LE DVLFIDEIHRL+ VEE+LY A+EDFQ+D Sbjct: 73 SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +M+G+GPSA+S++I++ FTL+ ATTR GLL++PL+ RFGI + L+FY +++LK I++R Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRA 192 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A L + + D AA IA RSRGTPRIA RL +RVRD V A I +I + L I Sbjct: 193 ASLMDVEIEDSAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D G D+ D + L I + GGPVG+ ++A L D + ++ EPY++Q GF+ RTPR Sbjct: 253 DAEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312 Query: 316 GRLLMPIAWQHLGIDIPH 333 GR+ A++HL ++P Sbjct: 313 GRVATEKAYKHLKYEVPE 330 >gi|227894653|ref|ZP_04012458.1| Holliday junction DNA helicase B [Lactobacillus ultunensis DSM 16047] gi|227863548|gb|EEJ70969.1| Holliday junction DNA helicase B [Lactobacillus ultunensis DSM 16047] Length = 341 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 162/311 (52%), Positives = 219/311 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL ++ GQ + ++I+AAK R EALDHVL GPPGLGKTTLA V+A ELGV+ Sbjct: 28 LRPQTLSQYLGQERVKKEMSIYIKAAKQRDEALDHVLLYGPPGLGKTTLAFVIANELGVH 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGP I KAGDL ALL++L+ DVLFIDEIHRL+ VEE+LY AMED+ +D+++GEG Sbjct: 88 LKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAMEDYYIDIVIGEG 147 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 + +V + L FTLI ATT G L+ PL+DRFGI + +Y +++L+ IVQR + + Sbjct: 148 QTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYNVDELEKIVQRSSDVFHT 207 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ EAA E+A RSRGTPR+A RLL+RVRDFAEV +TI+ + AL +L +D G D Sbjct: 208 SIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGERTISLATTENALKQLQVDDEGLD 267 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q D + L + + GGPVGI T++A + E + IE L EPY++Q GFI TPRGR++ Sbjct: 268 QTDRKLLRTMIEGYNGGPVGIRTLAANIGEDMETIESLYEPYLLQHGFILLTPRGRMVTD 327 Query: 322 IAWQHLGIDIP 332 A+ LG+ +P Sbjct: 328 KAYLQLGLPVP 338 >gi|154248851|ref|YP_001409676.1| Holliday junction DNA helicase RuvB [Fervidobacterium nodosum Rt17-B1] gi|171769318|sp|A7HJD6|RUVB_FERNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|154152787|gb|ABS60019.1| Holliday junction DNA helicase RuvB [Fervidobacterium nodosum Rt17-B1] Length = 347 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 160/309 (51%), Positives = 219/309 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ LK+ I+A+K R E LDH+L GPPGLGKTTLA ++A EL N Sbjct: 25 LRPKFLSEYIGQENIKERLKLAIQASKMRGEQLDHILLAGPPGLGKTTLATIIANELNAN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGP++ K GDLAA+LTNLE DVLFIDEIHR++ VEEILY AMEDFQ+D+M+G+G Sbjct: 85 IHVTSGPILEKQGDLAAILTNLEAGDVLFIDEIHRMNRNVEEILYSAMEDFQVDIMIGKG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+++ L FTLI ATTR GLLT+PL++RFG+ +NFY E+LK I+ R A++ G Sbjct: 145 PAARSIRVELQPFTLIGATTRSGLLTSPLRNRFGMIFEMNFYTQEELKMIITRAAEVMGT 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+AA IA RSRGTPRIA RLL+RVRD + V ++ IT I + + L +D+ G D Sbjct: 205 LIDDDAALSIAKRSRGTPRIAIRLLKRVRDLSTVRGSENITLNIVEEVMRLLGVDEFGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I + GGPVG+++++A L D I ++ EP+++Q GFI R RGR+ Sbjct: 265 EMDRKILKTIIEIYKGGPVGLKSLAASLGITEDTISEVYEPFLVQSGFIARGARGRIATE 324 Query: 322 IAWQHLGID 330 A+++LG + Sbjct: 325 KAYKYLGYN 333 >gi|284032304|ref|YP_003382235.1| Holliday junction DNA helicase RuvB [Kribbella flavida DSM 17836] gi|283811597|gb|ADB33436.1| Holliday junction DNA helicase RuvB [Kribbella flavida DSM 17836] Length = 350 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 163/313 (52%), Positives = 217/313 (69%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRPRTL EF GQ L++ + AA+ R A DHVL GPPGLGKTTLA ++A EL Sbjct: 23 SALRPRTLAEFGGQRRVSEQLELVLHAARGRRRAPDHVLLSGPPGLGKTTLAMIIAAELS 82 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 R TSGP I AGDLAA+L+ L + +VLF+DEIHR+S EE+LY AMEDF++D++VG Sbjct: 83 APLRVTSGPAIQHAGDLAAILSGLSEGEVLFLDEIHRMSRPAEELLYMAMEDFRVDVIVG 142 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GP A ++ + + FTL+ ATTR GLL PL+DRFG L FY +L+ IV R A L Sbjct: 143 KGPGATAIPLEIPPFTLVGATTRAGLLPGPLRDRFGFTGHLEFYAAAELEKIVNRSAALL 202 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 + +T EAA EIA RSRGTPRIA RLLRRVRD+AEV +T ++ AAL +D+MG Sbjct: 203 DVDITPEAATEIASRSRGTPRIANRLLRRVRDYAEVRADGIVTIALSKAALDLYEVDRMG 262 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D+LD L + R FGGGPVG+ T++ + E R+ +E++ EP++++ G++ RTPRGR+ Sbjct: 263 LDRLDRAVLDALCRRFGGGPVGLSTLAVAVGEERETVEEVAEPFLVRSGYLARTPRGRVA 322 Query: 320 MPIAWQHLGIDIP 332 P AW+HLG+ +P Sbjct: 323 TPAAWRHLGLTVP 335 >gi|15825805|pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant Length = 334 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 160/318 (50%), Positives = 220/318 (69%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D+ + LRP++L+EF GQ L + +EAAK R E LDHVL GPPGLGKTTLA ++A Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 EL N TSGPV+ K GD+AA+LT+LE DVLFIDEIHRL+ VEE+LY A+EDFQ+D Sbjct: 73 SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +M+G+GPSA+S++I++ FTL+ +TTR GLL++PL+ RFGI + L+FY +++LK I++R Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGSTTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRA 192 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A L + + D AA IA RSRGTPRIA RL +RVRD V A I +I + L I Sbjct: 193 ASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D G D+ D + L I + GGPVG+ ++A L D + ++ EPY++Q GF+ RTPR Sbjct: 253 DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312 Query: 316 GRLLMPIAWQHLGIDIPH 333 GR++ A++HL ++P Sbjct: 313 GRIVTEKAYKHLKYEVPE 330 >gi|281492889|ref|YP_003354869.1| Holliday junction DNA helicase RuvB [Lactococcus lactis subsp. lactis KF147] gi|38258953|sp|Q9CDL3|RUVB_LACLA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|281376541|gb|ADA66027.1| Holliday junction DNA helicase RuvB [Lactococcus lactis subsp. lactis KF147] gi|326407800|gb|ADZ64871.1| holliday junction DNA helicase RuvB [Lactococcus lactis subsp. lactis CV56] Length = 333 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 163/323 (50%), Positives = 224/323 (69%), Gaps = 1/323 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +L++ +ED I LRP+ ++ GQ + L++FI+AAK R E LDHVL GPPGL Sbjct: 4 ILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGL 63 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTT+A V+A ELGVN + T+GP I K GDL A+L LE DVLFIDEIHR+ + VEE+L Sbjct: 64 GKTTMAFVIANELGVNIKQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVL 123 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF +D+M+G G +RSV ++L FTL+ ATTR G+L+NPL+ RFGI + +Y+ Sbjct: 124 YSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGISSHMEYYQE 183 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 DL+ IV+R A + + V D AA EIA+RSRGTPRIA RLL+RVRDFA++ + + I Sbjct: 184 RDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVDKAI 243 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D AL L +D G D +D + L + + GGPVGI T++ ++E R+ +ED+ EPY+I Sbjct: 244 TDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLI 303 Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328 Q+GF+ RT +GR + A++HLG Sbjct: 304 QKGFLMRTKQGRKVTQRAYEHLG 326 >gi|125625243|ref|YP_001033726.1| Holliday junction DNA helicase B [Lactococcus lactis subsp. cremoris MG1363] gi|166231499|sp|A2RP06|RUVB_LACLM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|124494051|emb|CAL99051.1| holliday junction DNA helicase ruvB [Lactococcus lactis subsp. cremoris MG1363] gi|300072053|gb|ADJ61453.1| Holliday junction DNA helicase RuvB [Lactococcus lactis subsp. cremoris NZ9000] Length = 333 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 163/323 (50%), Positives = 224/323 (69%), Gaps = 1/323 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +L++ +ED I LRP+ ++ GQ + L++FI+AAK R E LDHVL GPPGL Sbjct: 4 ILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGL 63 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTT+A V+A ELGVN + T+GP I K GDL A+L LE DVLFIDEIHR+ + VEE+L Sbjct: 64 GKTTMAFVIANELGVNIKQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVL 123 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF +D+M+G G +RSV ++L FTL+ ATTR G+L+NPL+ RFGI + +Y+ Sbjct: 124 YSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGISSHMEYYQE 183 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 DL+ IV+R A + + V D AA EIA+RSRGTPRIA RLL+RVRDFA++ + + I Sbjct: 184 RDLEEIVKRTADIFEVEVIDNAAMEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVDKAI 243 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D AL L +D G D +D + L + + GGPVGI T++ ++E R+ +ED+ EPY+I Sbjct: 244 TDKALTILDVDAAGLDYIDQKILRTMIEIYHGGPVGIGTLAVNIAEDRETVEDMYEPYLI 303 Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328 Q+GF+ RT +GR + A++HLG Sbjct: 304 QKGFLMRTKQGRKVTQRAYEHLG 326 >gi|325473682|gb|EGC76871.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema denticola F0402] Length = 343 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 217/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L +F GQ +A NL VFI+AA+ R E+LDH+ +GPPGLGKTTLAQ+ A ELGV+ Sbjct: 22 LRPRSLVDFQGQTKAKENLSVFIKAARERGESLDHLFLIGPPGLGKTTLAQITANELGVD 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ T P + K DLA +LT L +R V FIDEIHRL +EE+LY AMED++LD ++G+G Sbjct: 82 FKVTGAPALDKPKDLAGILTTLTERSVFFIDEIHRLKPAIEEMLYIAMEDYELDWIIGQG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+V+I + FTL+ ATTR G++++PL RFGI R FY E+L +I+ R A + + Sbjct: 142 PGARTVRIPIPPFTLVGATTRAGMVSSPLISRFGIVQRFEFYSHEELASIISRSASILEI 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA +A SRGTPR+A RLLRR+RDFA+VA +I A L +L ID +G + Sbjct: 202 EIEKKAAIALARCSRGTPRVANRLLRRMRDFAQVAGKSSIDEMTVAAGLKQLNIDGLGLE 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D + L I N+ GGPVG ET++ + E +D +ED EPY+IQ G +QRTPRGR++ Sbjct: 262 TYDRQILRSIIENYSGGPVGAETLAISIGESQDTLEDYYEPYLIQSGLLQRTPRGRMVTL 321 Query: 322 IAWQHLGIDIP 332 A++HLG++ P Sbjct: 322 KAYEHLGLNPP 332 >gi|55980375|ref|YP_143672.1| Holliday junction DNA helicase RuvB [Thermus thermophilus HB8] gi|62287409|sp|Q5SL87|RUVB_THET8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|20330535|dbj|BAA76480.2| RuvB [Thermus thermophilus] gi|55771788|dbj|BAD70229.1| RuvB, Holliday junciton DNA helicase [Thermus thermophilus HB8] Length = 324 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 174/312 (55%), Positives = 227/312 (72%), Gaps = 1/312 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+E+ GQ L+V++EAAKAR E L+H+L GPPGLGKTTLA V+A ELGVN Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS EE LYPAMEDF +D+++G+ Sbjct: 66 LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 125 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR++++ L RFTLI ATTR GL+T PL RFGI L +Y E+L V R A+L G Sbjct: 126 GPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG 185 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + +T+EAA EI RSRGT R+A RL RRVRDFA+VA + ITRE A AL L +D++G Sbjct: 186 VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGL 245 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 ++ D L ++ FGGGPVG+ T++ LSE +E++ EPY+I+QG ++RTPRGR+ Sbjct: 246 EKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVAT 305 Query: 321 PIAWQHLGIDIP 332 +A++HLG P Sbjct: 306 ELAYRHLGYPPP 317 >gi|57242121|ref|ZP_00370061.1| Holliday junction DNA helicase RuvB [Campylobacter upsaliensis RM3195] gi|57017313|gb|EAL54094.1| Holliday junction DNA helicase RuvB [Campylobacter upsaliensis RM3195] Length = 335 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 159/311 (51%), Positives = 226/311 (72%), Gaps = 1/311 (0%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP + + GQ NL +FI AAK R E LDH+LF GP GLGKTTLA ++A E+ Sbjct: 18 SSLRPSNFDGYIGQDNIKKNLHIFINAAKKRGECLDHILFSGPAGLGKTTLANIIATEMR 77 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 N ++T+ P+I K+GDLAA+LTNL + DVLFIDEIHRLS +EE+LYPAMEDF+LD+++G Sbjct: 78 ANIKTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPAIEEVLYPAMEDFRLDIIIG 137 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+ RL FY+ E+L I+Q+ A Sbjct: 138 SGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKNEELALILQKAALKL 197 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 ++AA EIA RSR TPRIA RLL+RVRDFA+V + I+ + A AL L ++++G Sbjct: 198 NKNCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEENISLQRAYEALNSLGVNELG 257 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 FD +DLRYL ++ + G +G+ +I+A LSE + +ED+IEPY++ G+I+RT +GR+ Sbjct: 258 FDSMDLRYLELLT-SAKGKAMGLASIAAALSEDENTVEDVIEPYLLANGYIERTAKGRIA 316 Query: 320 MPIAWQHLGID 330 +++ L ++ Sbjct: 317 SIKSYRTLKLN 327 >gi|227872462|ref|ZP_03990803.1| crossover junction endoribonuclease subunit B [Oribacterium sinus F0268] gi|227841693|gb|EEJ51982.1| crossover junction endoribonuclease subunit B [Oribacterium sinus F0268] Length = 331 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 166/329 (50%), Positives = 234/329 (71%), Gaps = 2/329 (0%) Query: 2 MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+R+ L+ S+ED +RP+ L+++ GQ + L +FIEAAK R ++LDH LF Sbjct: 1 MERK-LIQTEESKEDLSFDPKIRPQFLKDYIGQEKLKETLSIFIEAAKKRKQSLDHCLFY 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTT++ ++A ELGV+ + TSGP I K G++AA+L NL + DVLF+DEIHRL+ Sbjct: 60 GPPGLGKTTISNIIANELGVHCKITSGPAIEKPGEIAAILNNLSEGDVLFVDEIHRLNRQ 119 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE+LYPAMEDF +D+++G+ S RS++++L RFTL+ ATTR GLL+ PL+DRFGI +L Sbjct: 120 VEEVLYPAMEDFAIDVLLGKESSTRSIRLDLPRFTLVGATTRAGLLSAPLRDRFGIIGKL 179 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY+ E+L+ IV R AK+ +++ + A IA+RSR +A RLL+RVRDFAE+ + Sbjct: 180 EFYKEEELEEIVLRSAKVLSISIDEGGAKSIALRSRVHQVLANRLLKRVRDFAEIKYNGV 239 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I +E+A+ AL L +D +G D D +YL + F GGPVG+ET++ L E R +ED+I Sbjct: 240 IRKEVAEDALDLLDVDTLGLDTYDRQYLWNLIEKFSGGPVGVETLATSLGEDRGTLEDMI 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY+I QG I RTPRGR+ A+QHLG+ Sbjct: 300 EPYLILQGLIDRTPRGRIATKHAYQHLGL 328 >gi|118617341|ref|YP_905673.1| Holliday junction DNA helicase RuvB [Mycobacterium ulcerans Agy99] gi|171460876|sp|A0PPD3|RUVB_MYCUA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|118569451|gb|ABL04202.1| Holliday junction DNA helicase RuvB [Mycobacterium ulcerans Agy99] Length = 345 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 163/330 (49%), Positives = 229/330 (69%), Gaps = 1/330 (0%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 +RE + V D D+SL RPR+L EF GQ L++ I+ AK R DH+L GP Sbjct: 7 EREVSPALTVGDGDVDVSL-RPRSLREFIGQPRVREQLQLVIQGAKNRGGTPDHILLSGP 65 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ E Sbjct: 66 PGLGKTSLAVIIAAELGSSLRMTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 125 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG ++F Sbjct: 126 EMLYLAMEDFRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 185 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE +L+ ++ R A + G+ + +A EIA RSRGTPRIA RLLRRVRDFAEV IT Sbjct: 186 YEPAELERVLVRSAGILGIQLGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVIT 245 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 R++A AAL +D++G D+LD L+ + R+F GGPVG+ T++ + E +E++ EP Sbjct: 246 RDVAKAALAVYDVDELGLDRLDRAVLSALTRSFSGGPVGVSTLAVAVGEEASTVEEVCEP 305 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++ G + RTPRGR+ +AW HLG+ P Sbjct: 306 FLVRAGMVARTPRGRVATALAWTHLGMTPP 335 >gi|223039370|ref|ZP_03609659.1| holliday junction DNA helicase RuvB [Campylobacter rectus RM3267] gi|222879431|gb|EEF14523.1| holliday junction DNA helicase RuvB [Campylobacter rectus RM3267] Length = 382 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 166/324 (51%), Positives = 232/324 (71%), Gaps = 2/324 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MDR + + + D ++SL RP E++ GQ + NL VFI+AAK R E LDHVLF G Sbjct: 44 MDRIVEIEKISFENDFEVSL-RPTRFEDYIGQEKIKQNLGVFIKAAKKRGECLDHVLFYG 102 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+GV+ + T+ P+I K+GDLAA+LTNL++ DVLFIDEIHRLS + Sbjct: 103 PPGLGKTTLAHIIANEMGVSIKMTAAPMIEKSGDLAAVLTNLQEGDVLFIDEIHRLSPAI 162 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+++ PL+DRFG+ RL Sbjct: 163 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMISAPLRDRFGMDFRLQ 222 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY E+L IVQ + G AA E+A RSR TPRIA RLL+R+RDFAEV + I Sbjct: 223 FYTREELARIVQIASVKLGKECEKAAALEVAARSRATPRIALRLLKRIRDFAEVNDEEII 282 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 ++ A AL L ++ +GFD++D++YL ++ P+G+ TI+A LSE +ED+IE Sbjct: 283 SQPRAKEALDALGVNDIGFDEMDIKYLEILLAA-KRRPMGLSTIAAALSEDEGTVEDVIE 341 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQ 325 PY++ G+I+RT +GRL A++ Sbjct: 342 PYLLANGYIERTAKGRLASAKAYE 365 >gi|301168493|emb|CBW28083.1| holliday junction DNA helicase ruvB [Bacteriovorax marinus SJ] Length = 330 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 165/327 (50%), Positives = 227/327 (69%), Gaps = 1/327 (0%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M E + N S+E++ + LRP+ E+ GQ + N++V +E+AK R +A+DHVL Sbjct: 1 MSEERVFDSNSSREESRQEIFLRPKDFSEYIGQRKVVQNIEVMVESAKIRKQAMDHVLLS 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT+LA ++A LG + SGP I K GDLAA+LTNLE+ DVLFIDEIHR++I Sbjct: 61 GPPGLGKTSLAMIIASALGSHLHVISGPAIEKKGDLAAILTNLEEGDVLFIDEIHRMNIS 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEILY AMED++LD+++GEG SAR+++I++S FTLI ATTR GLL++PL+DRF + Sbjct: 121 VEEILYSAMEDYRLDILIGEGASARTMEISISPFTLIGATTRSGLLSSPLRDRFMAHLHF 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FYE +L IV+ +K + + EA IA SRGTPRIA R+LRRVRDFA V ++ Sbjct: 181 DFYEHSELAKIVENNSKKLSIGLEGEAKNHIARCSRGTPRIANRILRRVRDFAVVESKES 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I E AL + ID+ G D++D + L +I + GGPVGIE + A LSE R IED+ Sbjct: 241 ICEEAVAKALDLMEIDEYGLDRMDRKVLEVIHDYYAGGPVGIEALCATLSEDRTTIEDVY 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327 EP+++++GF+ RTPRGR + A +HL Sbjct: 301 EPFLLKEGFLIRTPRGREISEKAKKHL 327 >gi|315923965|ref|ZP_07920193.1| crossover junction ATP-dependent DNA helicase RuvB [Pseudoramibacter alactolyticus ATCC 23263] gi|315622805|gb|EFV02758.1| crossover junction ATP-dependent DNA helicase RuvB [Pseudoramibacter alactolyticus ATCC 23263] Length = 353 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 168/330 (50%), Positives = 224/330 (67%), Gaps = 3/330 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DR +++ ++ D +I S LRP +LEE+ GQ + +FI AAK R E+LDHVL Sbjct: 1 MKDR--IITTEFTEPDIEIESSLRPTSLEEYIGQSRVKKQMGIFIAAAKNRGESLDHVLL 58 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A E+G + R TSGP I K GDLA++LT L+ DVLFIDEIHR+ Sbjct: 59 YGPPGLGKTTLANIIAGEMGTHIRITSGPAIEKPGDLASILTGLKAGDVLFIDEIHRMQR 118 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LYPAMEDF LD+++G+GP A+SV+++L RFTL+ ATTR GLL+ PL+DRFG+ R Sbjct: 119 QVEEVLYPAMEDFALDIIIGKGPGAKSVRLDLPRFTLVGATTRAGLLSAPLRDRFGVVQR 178 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L Y+ DL IV+R A + + + + A E+A RSRGTPRIA RLL+RVRD+AE + Sbjct: 179 LELYDAADLSAIVRRSAGILNIDLDEAGAMELARRSRGTPRIANRLLKRVRDYAETEGSG 238 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I A AL +D G D +D L IA F GGPVG+ T++A + E IE++ Sbjct: 239 HIDLATARRALALFEVDDKGLDDIDRLMLRTIAEKFDGGPVGLNTLAAAIGEEPGTIEEV 298 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+ RTP GR++ +HLGI Sbjct: 299 YEPYLMQLGFLSRTPSGRIITSAGCRHLGI 328 >gi|153952346|ref|YP_001397506.1| Holliday junction DNA helicase B [Campylobacter jejuni subsp. doylei 269.97] gi|166231479|sp|A7H1X6|RUVB_CAMJD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|152939792|gb|ABS44533.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. doylei 269.97] Length = 335 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 156/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + + GQ NL +FI AAK R E LDH+LF GP GLGKTTLA +++ E+ N Sbjct: 20 LRPSNFDGYIGQESIKKNLNIFITAAKKRNECLDHILFSGPAGLGKTTLANIISYEMDAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS +EE+LYPAMED++LD+++G G Sbjct: 80 IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+ RL FY+ +L I+Q+ A Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++AA EIA RSR TPRIA RLL+RVRDFA+V + IT + A+ AL L ++++GFD Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +DLRYL ++ P+G+ +I+A LSE + IED+IEPY++ G+I+RT +GR+ Sbjct: 260 AMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIAST 318 Query: 322 IAWQHLGID 330 ++ L ++ Sbjct: 319 KSYSALKLN 327 >gi|13399857|pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8 gi|13399858|pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8 Length = 324 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 174/312 (55%), Positives = 227/312 (72%), Gaps = 1/312 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+E+ GQ L+V++EAAKAR E L+H+L GPPGLGKTTLA V+A ELGVN Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS EE LYPAMEDF +D+++G+ Sbjct: 66 LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 125 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR++++ L RFTLI ATTR GL+T PL RFGI L +Y E+L V R A+L G Sbjct: 126 GPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG 185 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + +T+EAA EI RSRGT R+A RL RRVRDFA+VA + ITRE A AL L +D++G Sbjct: 186 VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGL 245 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 ++ D L ++ FGGGPVG+ T++ LSE +E++ EPY+I+QG ++RTPRGR+ Sbjct: 246 EKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPT 305 Query: 321 PIAWQHLGIDIP 332 +A++HLG P Sbjct: 306 ELAYRHLGYPPP 317 >gi|86150918|ref|ZP_01069134.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni 260.94] gi|315124802|ref|YP_004066806.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85842088|gb|EAQ59334.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni 260.94] gi|315018524|gb|ADT66617.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 335 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 156/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + + GQ NL +FI AAK R E LDH+LF GP GLGKTTLA +++ E+ N Sbjct: 20 LRPSNFDGYIGQESIKKNLNIFITAAKKRNECLDHILFSGPAGLGKTTLANIISYEMDAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS +EE+LYPAMED++LD+++G G Sbjct: 80 IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+ RL FY+ +L I+Q+ A Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++AA EIA RSR TPRIA RLL+RVRDFA+V + IT + A+ AL L ++++GFD Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +DLRYL ++ P+G+ +I+A LSE + IED+IEPY++ G+I+RT +GR+ Sbjct: 260 AMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASA 318 Query: 322 IAWQHLGID 330 ++ L ++ Sbjct: 319 KSYSALKLN 327 >gi|227542216|ref|ZP_03972265.1| Holliday junction DNA helicase B [Corynebacterium glucuronolyticum ATCC 51866] gi|227182045|gb|EEI63017.1| Holliday junction DNA helicase B [Corynebacterium glucuronolyticum ATCC 51866] Length = 365 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 162/326 (49%), Positives = 225/326 (69%), Gaps = 1/326 (0%) Query: 8 LSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 +S + D D+ + LRP++++EF GQ + L++ +E AK R A DHVL GPPGLG Sbjct: 33 VSPEKQETDHDLEVSLRPKSIDEFIGQDKVRKQLRLVLEGAKKRGSAPDHVLLSGPPGLG 92 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY Sbjct: 93 KTTMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 152 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG + FY + Sbjct: 153 MAMEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAHMEFYSPK 212 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 DL ++V R AK+ G+ + EAA EIA RSRGTPRIA RLLRRVRD+AEV I + A Sbjct: 213 DLTSVVLRAAKILGVNIDKEAAAEIAGRSRGTPRIANRLLRRVRDYAEVHSDGHIDVDAA 272 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 AL+ +D+ G D+LD L + + GGGPVG+ T++ + E +E++ EPY+++ Sbjct: 273 KTALVVFDVDEKGLDRLDRAVLNALIKGHGGGPVGVSTLAIAVGEEPSTVEEVCEPYLVR 332 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332 G I RT RGR+ AWQHLG+ P Sbjct: 333 AGLISRTGRGRVATAAAWQHLGLTPP 358 >gi|42527419|ref|NP_972517.1| Holliday junction DNA helicase RuvB [Treponema denticola ATCC 35405] gi|47606091|sp|P61538|RUVB_TREDE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|41818004|gb|AAS12428.1| Holliday junction DNA helicase RuvB [Treponema denticola ATCC 35405] Length = 343 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 217/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L +F GQ +A NL VFI+AA+ R E+LDH+ +GPPGLGKTTLAQ+ A ELGV+ Sbjct: 22 LRPRSLVDFQGQTKAKENLSVFIKAARERGESLDHLFLIGPPGLGKTTLAQITANELGVD 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ T P + K DLA +LT L +R V FIDEIHRL +EE+LY AMED++LD ++G+G Sbjct: 82 FKVTGAPALDKPKDLAGILTTLTERSVFFIDEIHRLKPAIEEMLYIAMEDYELDWIIGQG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+V+I + FTL+ ATTR G++++PL RFGI R FY E+L +I+ R A + + Sbjct: 142 PGARTVRIPIPPFTLVGATTRAGMVSSPLISRFGIVQRFEFYSHEELASIISRSASILEI 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA +A SRGTPR+A RLLRR+RDFA+VA +I A L +L ID +G + Sbjct: 202 EIEKKAAIALARCSRGTPRVANRLLRRMRDFAQVAGKSSIDEMTVAAGLKQLNIDGLGLE 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D + L I N+ GGPVG ET++ + E +D +ED EPY+IQ G +QRTPRGR++ Sbjct: 262 TYDRQILRSIIENYSGGPVGAETLAISIGESQDTLEDYYEPYLIQSGLLQRTPRGRMVTL 321 Query: 322 IAWQHLGIDIP 332 A++HLG++ P Sbjct: 322 KAYEHLGLNPP 332 >gi|15825806|pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant Length = 334 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 160/318 (50%), Positives = 220/318 (69%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D+ + LRP++L+EF GQ L + +EAAK R E LDHVL GPPGLG+TTLA ++A Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIA 72 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 EL N TSGPV+ K GD+AA+LT+LE DVLFIDEIHRL+ VEE+LY A+EDFQ+D Sbjct: 73 SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +M+G+GPSA+S++I++ FTL+ ATTR GLL++PL+ RFGI + L+FY +++LK I++R Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRA 192 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A L + + D AA IA RSRGTPRIA RL +RVRD V A I +I + L I Sbjct: 193 ASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D G D+ D + L I + GGPVG+ ++A L D + ++ EPY++Q GF+ RTPR Sbjct: 253 DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312 Query: 316 GRLLMPIAWQHLGIDIPH 333 GR++ A++HL ++P Sbjct: 313 GRIVTEKAYKHLKYEVPE 330 >gi|227513118|ref|ZP_03943167.1| Holliday junction DNA helicase B [Lactobacillus buchneri ATCC 11577] gi|227524333|ref|ZP_03954382.1| Holliday junction DNA helicase B [Lactobacillus hilgardii ATCC 8290] gi|227083693|gb|EEI19005.1| Holliday junction DNA helicase B [Lactobacillus buchneri ATCC 11577] gi|227088564|gb|EEI23876.1| Holliday junction DNA helicase B [Lactobacillus hilgardii ATCC 8290] Length = 339 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 163/318 (51%), Positives = 222/318 (69%), Gaps = 1/318 (0%) Query: 11 NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 NV+ ++ +I LRP+TL ++ GQ + + LKV+I+AAK R E+LDHVL GPPGLGKTT Sbjct: 12 NVNGDENNIEKTLRPQTLGDYIGQTDVKNELKVYIKAAKQREESLDHVLLYGPPGLGKTT 71 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA V+A E+GVN R+T+GP I K GDL +LL L DVLFIDEIHRL +VEE+LY AM Sbjct: 72 LAMVIANEMGVNIRTTTGPAIDKPGDLLSLLNELNPGDVLFIDEIHRLPKVVEEMLYSAM 131 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 EDF +D++VG+G A V L FTLI ATT+ G+L+ PL+DRFGI +N+YE+ DL+ Sbjct: 132 EDFFVDIIVGQGSGAHPVHFPLPPFTLIGATTQAGMLSAPLRDRFGIVEHMNYYEVSDLE 191 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IVQR A + + + A EIA+RSRGTPR+A RLL+R+RDFA+V I EI A Sbjct: 192 EIVQRTAGIFQIPILKSGAHEIALRSRGTPRVANRLLKRIRDFAQVFDKDNIDLEIVRYA 251 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L +L +D +G D D++ L + + GGPVG++T++A + E D I ++ EPY++Q G Sbjct: 252 LEKLKVDDLGLDATDIKLLRTMIDYYDGGPVGLKTLAANIGEETDTIAEMYEPYLLQIGL 311 Query: 310 IQRTPRGRLLMPIAWQHL 327 I+RT RGR + P ++HL Sbjct: 312 IKRTARGRRVTPKGYEHL 329 >gi|296273983|ref|YP_003656614.1| Holliday junction DNA helicase RuvB [Arcobacter nitrofigilis DSM 7299] gi|296098157|gb|ADG94107.1| Holliday junction DNA helicase RuvB [Arcobacter nitrofigilis DSM 7299] Length = 338 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 169/314 (53%), Positives = 231/314 (73%), Gaps = 9/314 (2%) Query: 11 NVSQ-----EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 NV Q E ++ISL RP + +++ GQ + NL+VFI+A++ R EALDH+LF GPPGL Sbjct: 7 NVEQISFEDEKSEISL-RPSSWDDYIGQEKIKKNLRVFIDASRKRGEALDHILFYGPPGL 65 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ +++ E+ N + T+GP+I K+GDLAA+LTNLE+ D+LFIDEIHRLS VEEIL Sbjct: 66 GKTTLSYLISNEMNSNIKITAGPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEIL 125 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED++LD+++G GP+A++VKI+L RFTLI ATTR G+L+NPL++RFG+ R+ FY Sbjct: 126 YPAMEDYRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQFYTH 185 Query: 186 EDLKTIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +L I+Q G KL D A+ EIA RSRGTPRIA RLLRRVRDFAEV + + I + Sbjct: 186 PELSKIIQIAGTKLDKECEKD-ASLEIARRSRGTPRIALRLLRRVRDFAEVENEQIIKLK 244 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 + AL L +++ GFD++D+ L ++ N G P+G+ TI+A LSE IED IEPY+ Sbjct: 245 RCEYALNELGVNETGFDEMDINLLELLVSN-RGRPMGLSTIAAALSEDEGTIEDAIEPYL 303 Query: 305 IQQGFIQRTPRGRL 318 + G+I+RT RGR+ Sbjct: 304 LANGYIERTARGRV 317 >gi|326693301|ref|ZP_08230306.1| Holliday junction DNA helicase RuvB [Leuconostoc argentinum KCTC 3773] Length = 355 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 163/322 (50%), Positives = 222/322 (68%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N +++ ++SL RP+ L E+ GQ L V+I AAK R EALDHVL GPPGLGKTTL Sbjct: 32 NQAEQHDELSL-RPQFLREYIGQTALKEELSVYIAAAKQRQEALDHVLLFGPPGLGKTTL 90 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+GV+ ++TSGP I K GDL ALL LE D+LFIDEIHRL +EEI+Y AME Sbjct: 91 AMIIANEMGVHIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTNIEEIMYSAME 150 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+ +D+MVG+GP+AR+V L FTLI ATTR G+L+ PL+DRFGI + +Y +L+ Sbjct: 151 DYFVDIMVGQGPTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINAMVYYTPAELQE 210 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R A + + A E+A+RSRGTPRIA RLL+RVRDFA+V I + I D AL Sbjct: 211 IVVRSADIFQAPIKPAGAYEVALRSRGTPRIANRLLKRVRDFAQVQGLDAIDQGIVDVAL 270 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +L +D G D+ D ++L + + GGPVG+ TI+A + E + +E ++EPY++Q GF+ Sbjct: 271 DKLRVDNRGLDETDHKFLGTMVAYYNGGPVGLNTIAANIGEEAETLESMVEPYLLQIGFL 330 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 QRTPRGR++ A++HL + P Sbjct: 331 QRTPRGRVVTEAAYKHLNLPYP 352 >gi|300858593|ref|YP_003783576.1| holliday junction resolvasome helicase subunit B [Corynebacterium pseudotuberculosis FRC41] gi|300686047|gb|ADK28969.1| Holliday junction resolvasome helicase subunit B [Corynebacterium pseudotuberculosis FRC41] gi|302206305|gb|ADL10647.1| Holliday junction ATP-dependent DNA helicase ruvB [Corynebacterium pseudotuberculosis C231] gi|302330862|gb|ADL21056.1| Holliday junction ATP-dependent DNA helicase ruvB [Corynebacterium pseudotuberculosis 1002] gi|308276547|gb|ADO26446.1| Holliday junction ATP-dependent DNA helicase ruvB [Corynebacterium pseudotuberculosis I19] Length = 365 Score = 329 bits (843), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 164/325 (50%), Positives = 222/325 (68%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 +R + E+ + LRPR++EEF GQ + L + + AK R DHVL GPPGLGKT Sbjct: 31 ARQQAGENDAETTLRPRSIEEFIGQPKVRGQLNLVLTGAKKRGVTPDHVLLSGPPGLGKT 90 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 T+A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY A Sbjct: 91 TMAMIIAYELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMA 150 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG ++ FYE DL Sbjct: 151 MEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYENSDL 210 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 +V R AK+ G+ + D AA EIA RSRGTPRIA RLLRRVRDFAEV I E A + Sbjct: 211 TKVVLRAAKILGVTIDDAAAIEIASRSRGTPRIANRLLRRVRDFAEVHSDGHIDVEAARS 270 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL+ +D+ G D+LDL L + + GGGPVG+ T++ + E +E++ EPY+++ G Sbjct: 271 ALVVFDVDEKGLDRLDLAVLEALIKGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVRAG 330 Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333 I RT RGR+ AW+HLG+ P Sbjct: 331 MITRTGRGRVATAAAWRHLGLVPPE 355 >gi|120403561|ref|YP_953390.1| Holliday junction DNA helicase RuvB [Mycobacterium vanbaalenii PYR-1] gi|171769147|sp|A1T884|RUVB_MYCVP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|119956379|gb|ABM13384.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium vanbaalenii PYR-1] Length = 355 Score = 328 bits (842), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 165/330 (50%), Positives = 227/330 (68%), Gaps = 1/330 (0%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 +RE + V + D D SL RPR+L EF GQ L++ +E AK R DH+L GP Sbjct: 14 EREMSAALTVGEGDIDASL-RPRSLGEFIGQPRVREQLQLVLEGAKNRGGTPDHILLSGP 72 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ E Sbjct: 73 PGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 132 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++F Sbjct: 133 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 192 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE +L+ ++ R A + G+ + EA EIA RSRGTPRIA RLLRRVRD+AEV IT Sbjct: 193 YEPSELERVLARSAGILGIELGAEAGAEIARRSRGTPRIANRLLRRVRDYAEVRADGVIT 252 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 R+IA AL +D++G D+LD L+ + R+FGGGPVG+ T++ + E +E++ EP Sbjct: 253 RDIAKYALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCEP 312 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++ G I RTPRGR+ AW HLG+ P Sbjct: 313 FLVRAGMIARTPRGRVATAQAWTHLGMKPP 342 >gi|227488787|ref|ZP_03919103.1| Holliday junction DNA helicase B [Corynebacterium glucuronolyticum ATCC 51867] gi|227091209|gb|EEI26521.1| Holliday junction DNA helicase B [Corynebacterium glucuronolyticum ATCC 51867] Length = 365 Score = 328 bits (842), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 162/326 (49%), Positives = 224/326 (68%), Gaps = 1/326 (0%) Query: 8 LSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 +S + D D+ + LRP++++EF GQ + L++ +E AK R A DHVL GPPGLG Sbjct: 33 VSPEKQETDHDLEVSLRPKSIDEFIGQDKVRKQLRLVLEGAKKRGSAPDHVLLSGPPGLG 92 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY Sbjct: 93 KTTMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 152 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG + FY + Sbjct: 153 MAMEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAHMEFYSPK 212 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 DL +V R AK+ G+ + EAA EIA RSRGTPRIA RLLRRVRD+AEV I + A Sbjct: 213 DLTAVVLRAAKILGVNIDKEAAAEIAGRSRGTPRIANRLLRRVRDYAEVHSDGHIDVDAA 272 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 AL+ +D+ G D+LD L + + GGGPVG+ T++ + E +E++ EPY+++ Sbjct: 273 KTALVVFDVDEKGLDRLDRAVLNALIKGHGGGPVGVSTLAIAVGEEPSTVEEVCEPYLVR 332 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332 G I RT RGR+ AWQHLG+ P Sbjct: 333 AGLISRTGRGRVATAAAWQHLGLTPP 358 >gi|218248327|ref|YP_002373698.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 8801] gi|257060346|ref|YP_003138234.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 8802] gi|226725456|sp|B7K1K0|RUVB_CYAP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|218168805|gb|ACK67542.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 8801] gi|256590512|gb|ACV01399.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 8802] Length = 360 Score = 328 bits (842), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 163/325 (50%), Positives = 230/325 (70%), Gaps = 2/325 (0%) Query: 7 LLSRNVSQEDADIS--LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 LLS + ++ + S +RP LE++ GQ + S L + +EAAK R ++LDH+L GPPG Sbjct: 27 LLSPTPTHQEKETSEEKIRPHRLEDYIGQKDLKSILAIAMEAAKTRQDSLDHLLLYGPPG 86 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTT++ ++A E+GVN + T+ P + + D+ LL NL+ D+LFIDEIHRL+ + EE+ Sbjct: 87 LGKTTISLILASEMGVNCKITAAPALERPRDITGLLINLKPGDILFIDEIHRLNRLTEEL 146 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMED++LD+ +G+G +AR+ I+L +FTLI ATT+VG LT+PL+DRFG+ RL FYE Sbjct: 147 LYPAMEDYRLDITIGKGKAARTQSIHLPKFTLIGATTKVGALTSPLRDRFGLIQRLRFYE 206 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +++L IV R A++ AVT+E A EIA RSRGTPRIA RLLRRVRD+ +V + TI +E Sbjct: 207 VDELTLIVLRTAQILDTAVTEEGATEIARRSRGTPRIANRLLRRVRDYMQVKNGTTIDQE 266 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A AL +DK G D +D L + F GGPVG+E I+A E IE++ EPY+ Sbjct: 267 LASEALDIYQVDKQGLDWIDRLILETMINQFKGGPVGLEAIAASTGEDAKTIEEVYEPYL 326 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329 +Q GF+ RTPRGR++ +A+QHLG+ Sbjct: 327 LQIGFLNRTPRGRVVSAVAYQHLGL 351 >gi|255323346|ref|ZP_05364480.1| holliday junction DNA helicase RuvB [Campylobacter showae RM3277] gi|255299638|gb|EET78921.1| holliday junction DNA helicase RuvB [Campylobacter showae RM3277] Length = 339 Score = 328 bits (841), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 167/326 (51%), Positives = 233/326 (71%), Gaps = 6/326 (1%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MDR + + + D ++SL RP E++ GQ + NL VFI+AAK R E LDHVLF G Sbjct: 1 MDRIVEIEKISFENDFEVSL-RPTRFEDYIGQGKIKQNLGVFIKAAKKRGECLDHVLFYG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+GV+ + T+ P+I K+GDLAA+LTNL++ DVLFIDEIHRLS + Sbjct: 60 PPGLGKTTLAHIIANEMGVSIKMTAAPMIEKSGDLAAVLTNLQEGDVLFIDEIHRLSPAI 119 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+++ PL+DRFG+ RL Sbjct: 120 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMISAPLRDRFGMDFRLQ 179 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY E+L IVQ + G AA E+A RSR TPRIA RLL+R+RDFAEV I Sbjct: 180 FYTREELARIVQIASVKLGKECEKAAALEVAARSRATPRIALRLLKRIRDFAEVNDEAII 239 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMI--ARNFGGGPVGIETISAGLSEPRDAIEDL 299 ++ A AL L ++ +GFD++D++YL ++ A+ P+G+ TI+A LSE +ED+ Sbjct: 240 SQPRAKEALDALGVNDIGFDEMDIKYLEILLAAKR---RPMGLSTIAAALSEDEGTVEDV 296 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQ 325 IEPY++ G+I+RT +GRL A++ Sbjct: 297 IEPYLLANGYIERTAKGRLASAKAYE 322 >gi|15825808|pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v Length = 334 Score = 328 bits (841), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 160/318 (50%), Positives = 219/318 (68%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D+ + LRP++L+EF GQ L + +EAAK R E LDHVL GPPGLGKTTLA ++A Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 EL N TSGPV+ K GD+AA+LT+LE DVLFIDEIHRL+ VEE+LY A+EDFQ+D Sbjct: 73 SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +M+G+GPSA+S++I++ FTL+ AT R GLL++PL+ RFGI + L+FY +++LK I++R Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGATVRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRA 192 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A L + + D AA IA RSRGTPRIA RL +RVRD V A I +I + L I Sbjct: 193 ASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D G D+ D + L I + GGPVG+ ++A L D + ++ EPY++Q GF+ RTPR Sbjct: 253 DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312 Query: 316 GRLLMPIAWQHLGIDIPH 333 GR++ A++HL ++P Sbjct: 313 GRIVTEKAYKHLKYEVPE 330 >gi|227529694|ref|ZP_03959743.1| Holliday junction DNA helicase B [Lactobacillus vaginalis ATCC 49540] gi|227350360|gb|EEJ40651.1| Holliday junction DNA helicase B [Lactobacillus vaginalis ATCC 49540] Length = 338 Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 160/313 (51%), Positives = 218/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ + L ++I+AAK R EALDHVL GPPGLGKTTLA V+ ELGVN Sbjct: 26 LRPQNLADYIGQTKIKHGLNIYIKAAKEREEALDHVLLYGPPGLGKTTLAMVITNELGVN 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I K GDL ALL L+ DVLFIDEIHRL +VEE+LY AMED+ +D+++GEG Sbjct: 86 IKTTSGPAIEKPGDLVALLNELKPGDVLFIDEIHRLPKVVEEMLYSAMEDYYIDIVIGEG 145 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A V L FTLI ATTR G+L+ PL+DRFGI +++Y ++L I+ R A + Sbjct: 146 PTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVEHMSYYNQDELTRIIFRSAGIFQT 205 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DE A E+A+RSRGTPRIA RLL+RVRDFA+VA +I AL L ID G D Sbjct: 206 KIEDEGAHELALRSRGTPRIANRLLKRVRDFAQVAGKGSIDLASVRQALKLLQIDDQGLD 265 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L + + GGPVG++TI+A + E + IE++ EPY++Q G++ RT RGR++ Sbjct: 266 EIDRKLLLTMINYYHGGPVGLKTIAANIGEEKSTIEEMYEPYLLQIGYLTRTARGRMVTE 325 Query: 322 IAWQHLGIDIPHR 334 A++HLG++ P + Sbjct: 326 AAYKHLGLEYPTK 338 >gi|116333840|ref|YP_795367.1| Holliday junction DNA helicase B [Lactobacillus brevis ATCC 367] gi|122269473|sp|Q03R36|RUVB_LACBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116099187|gb|ABJ64336.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus brevis ATCC 367] Length = 338 Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 170/335 (50%), Positives = 224/335 (66%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M+D E ++S + ED+ LRP+ L ++ GQ L V+I+AAK R E+LDHVL Sbjct: 1 MVDDERVVSPETADDHEDSVEKSLRPQVLAQYIGQEPIKHELSVYIQAAKQREESLDHVL 60 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 GPPGLGKTTLA V+A E+GV R+TSGP I K GDL ALL L+ D+LFIDEIHRL Sbjct: 61 LYGPPGLGKTTLAMVIANEMGVQIRTTSGPAIEKPGDLVALLNELQPGDILFIDEIHRLP 120 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 IVEE+LY AMEDF +D++VG+GP+A V L FTLI ATTR GLL+ PL+DRFGI Sbjct: 121 KIVEEMLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGLLSAPLRDRFGIVE 180 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-H 237 + +YE DL+ IV R A + A+ E A EIA+RSRGTPRIA RLL+R+RDFAEVA Sbjct: 181 HMAYYETTDLQEIVLRSADIFHTAIATEGAHEIALRSRGTPRIANRLLKRIRDFAEVAPD 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 I I D AL L +D G D D++ L + + GGPVG+ T++A + E + + Sbjct: 241 HDQIDLAIVDHALDLLRVDSAGLDATDIKLLETMIDYYNGGPVGLNTLAANIGEETETVA 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 + EPY++Q+G+++RT RGR++ +QHLG +P Sbjct: 301 AMYEPYLLQRGYLKRTARGRVVTATGYQHLGRTMP 335 >gi|261417027|ref|YP_003250710.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373483|gb|ACX76228.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325461|gb|ADL24662.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes subsp. succinogenes S85] Length = 345 Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 164/311 (52%), Positives = 216/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L EFTGQ + +L + IEAAK R +ALDH LF GPPGLGKTTL+ ++A+E+GVN Sbjct: 23 LRPPSLSEFTGQDDIKESLSIAIEAAKQRGDALDHCLFAGPPGLGKTTLSSIIAKEMGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGPV+ KA DLA LLT+L++ D+LFIDEIHRL+ +VEE LYPAMEDF+LD+M+ G Sbjct: 83 IHITSGPVLEKASDLAGLLTSLQENDILFIDEIHRLNRVVEEYLYPAMEDFRLDIMLDSG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV + L FTL+ ATTR GLLT PL+DRFG+ RL Y +D+ I+ R A++ G+ Sbjct: 143 PAARSVNLPLKHFTLVGATTRSGLLTGPLRDRFGLQYRLELYNEKDIVKILMRSARILGV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +++EAA + R RGTPR+A R+LRR RD A+V I A L L ID G D Sbjct: 203 ELSEEAAKILGGRCRGTPRVANRVLRRCRDVAQVRGTGVIDERAALKTLEMLGIDSEGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D + L M+ F GGPVG+ TISA + E D +E++ EPY++Q+G I RTPRGR+ Sbjct: 263 PTDRKILAMMIDKFNGGPVGLGTISAAMGEEPDTLEEVYEPYLLQKGLISRTPRGRIATL 322 Query: 322 IAWQHLGIDIP 332 A++ L +P Sbjct: 323 NAYRMLHKPLP 333 >gi|254822006|ref|ZP_05227007.1| Holliday junction DNA helicase RuvB [Mycobacterium intracellulare ATCC 13950] Length = 351 Score = 328 bits (841), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 162/320 (50%), Positives = 225/320 (70%), Gaps = 1/320 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + D D+SL RPR+L EF GQ L++ IE AK R DH+L GPPGLGKT+LA Sbjct: 20 GEGDIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILLSGPPGLGKTSLAM 78 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF Sbjct: 79 IIAAELGSSLRLTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAEEMLYLAMEDF 138 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 ++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++FYE +L+ ++ Sbjct: 139 RVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFYEPAELERVL 198 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A + G+ + +AA EIA RSRGTPRIA RLLRRVRDFAEV ITR++A +AL Sbjct: 199 ARSAGILGIELGGDAAEEIARRSRGTPRIANRLLRRVRDFAEVRADGVITRDVAKSALAV 258 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 +D++G D+LD L+ + R+FGGGPVG+ T++ + E +E++ EP++++ G + R Sbjct: 259 YDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCEPFLVRAGMVAR 318 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ AW HLG+ P Sbjct: 319 TPRGRVATAQAWTHLGMAPP 338 >gi|317013831|gb|ADU81267.1| Holliday junction DNA helicase RuvB [Helicobacter pylori Gambia94/24] Length = 336 Score = 328 bits (841), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELSLIIKKAAAKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|291519344|emb|CBK74565.1| Holliday junction DNA helicase, RuvB subunit [Butyrivibrio fibrisolvens 16/4] Length = 337 Score = 328 bits (841), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 163/333 (48%), Positives = 224/333 (67%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M+ + + S S ED + + LRP++ + + GQ + N+K++IEAAK R +ALDHVL Sbjct: 1 MLSNKQITSTIASHEDLVNDNALRPKSFDGYIGQTKVKENMKIYIEAAKNRGDALDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+G N + TSGP I G++ A+L L+D D+LFIDEIHRLS Sbjct: 61 YGPPGLGKTTLAGIVAGEMGSNIKVTSGPAITIPGEIVAVLMTLKDGDILFIDEIHRLSK 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE LY AMEDF +D+++G+ +ARS+ L RFTLI ATTR GLL+ PL+DRFGI Sbjct: 121 PVEETLYSAMEDFAVDIVMGKDTTARSIHTKLPRFTLIGATTRPGLLSAPLRDRFGIIGH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 +++Y E+L TIV A + E A +IA+RSRGTPR+A R L+RVRD+AEV + Sbjct: 181 MDYYTPEELSTIVTASAAKLNAPIDYEGAYQIALRSRGTPRLANRYLKRVRDYAEVRYDG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 IT+E+A A L L +D +G D D L I FGGGPVG++ ++A + E IED+ Sbjct: 241 AITKEVASATLDSLEVDTLGLDYNDRSILLAIIERFGGGPVGLDNLAATVGEDSGTIEDV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++Q G I RTP+GR+ +A++H + +P Sbjct: 301 YEPYLLQHGLIIRTPKGRVATKLAYEHFNMPVP 333 >gi|193212227|ref|YP_001998180.1| Holliday junction DNA helicase RuvB [Chlorobaculum parvum NCIB 8327] gi|238692619|sp|B3QM27|RUVB_CHLP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|193085704|gb|ACF10980.1| Holliday junction DNA helicase RuvB [Chlorobaculum parvum NCIB 8327] Length = 342 Score = 328 bits (840), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 160/306 (52%), Positives = 222/306 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+++ +F GQ + NLKVFI AA+ R +ALDHVL GPPGLGKTTLA ++A E+G Sbjct: 21 IRPQSMSDFAGQKKLTDNLKVFITAARKRGDALDHVLLSGPPGLGKTTLAHIIAAEMGGG 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP+I KAG+LA LLT+L+ D+LFIDEIHRL+ VEE LY AMED+++D+++ G Sbjct: 81 IKITSGPLIDKAGNLAGLLTSLKKGDILFIDEIHRLAPAVEEYLYSAMEDYRIDILLDSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P++R+V++ L FTL+ ATTR GLLT+PL+ RFGI RL++Y E L++I+ R A + + Sbjct: 141 PASRAVQLKLEPFTLVGATTRSGLLTSPLRARFGINSRLDYYSPELLQSIIVRAAGILNI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V ++AA EIA RSRGTPRIA RLLRR RDFA+VA+ +I+ +A L L ID+ G D Sbjct: 201 GVDEDAAMEIARRSRGTPRIANRLLRRARDFAQVANEASISLAVARRTLESLEIDEGGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I R F GGPVG+ +++ + E +D IE++ EPY+IQ G++ RTPRGR+ Sbjct: 261 DMDKKILEAIVRKFNGGPVGVASLAVSVGEEQDTIEEVYEPYLIQVGYLARTPRGRVATR 320 Query: 322 IAWQHL 327 +A Q Sbjct: 321 LAMQRF 326 >gi|56750714|ref|YP_171415.1| Holliday junction DNA helicase RuvB [Synechococcus elongatus PCC 6301] gi|81820695|sp|Q5N474|RUVB_SYNP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|56685673|dbj|BAD78895.1| holliday junction DNA helicase RuvB [Synechococcus elongatus PCC 6301] Length = 375 Score = 328 bits (840), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 165/312 (52%), Positives = 213/312 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ E L + I AAK+R E+LDH+L GPPGLGKTT+A V+A E+GV Sbjct: 48 IRPQRLADYIGQPELKDVLGIAIAAAKSRQESLDHLLLYGPPGLGKTTMALVLATEMGVQ 107 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R T+ P + + D+ LL NL+ DVLFIDEIHRL + EEILYPAMEDF+LD+ +G+G Sbjct: 108 CRITTAPALERPRDIVGLLVNLQPGDVLFIDEIHRLPKVTEEILYPAMEDFRLDITIGKG 167 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SAR+ I L FTL+ ATT++G LT+PL+DRFG+ RL FYE+E L IVQR A+L Sbjct: 168 QSARTPSITLHPFTLVGATTQIGALTSPLRDRFGLVQRLRFYEVEALTDIVQRTARLLNT 227 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA RSRGTPRIA RLLRRVRD+A V IT IA AL +D G D Sbjct: 228 PLDQAGAEEIAKRSRGTPRIANRLLRRVRDYAAVKAPGPITGAIAATALELYNVDPCGLD 287 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L+ + NFGGGPVG+ET++A E +E++ EPY++Q G++QRTP GR+ P Sbjct: 288 WTDRRLLSHLIENFGGGPVGLETLAAATGEDAQTVEEVYEPYLLQIGYLQRTPPGRVATP 347 Query: 322 IAWQHLGIDIPH 333 AW+HLG + P Sbjct: 348 AAWRHLGYEPPQ 359 >gi|15827160|ref|NP_301423.1| Holliday junction DNA helicase RuvB [Mycobacterium leprae TN] gi|221229638|ref|YP_002503054.1| Holliday junction DNA helicase RuvB [Mycobacterium leprae Br4923] gi|13432236|sp|P40833|RUVB_MYCLE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767434|sp|B8ZUI2|RUVB_MYCLB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|13092708|emb|CAC29991.1| Holliday junction helicase component [Mycobacterium leprae] gi|219932745|emb|CAR70576.1| Holliday junction helicase component [Mycobacterium leprae Br4923] Length = 349 Score = 328 bits (840), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 163/331 (49%), Positives = 228/331 (68%), Gaps = 1/331 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 +DR+ + V + D D+SL RPR+L EF GQ L++ IE AK R DH+L G Sbjct: 6 LDRDVSPALTVGEADIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGATPDHILLSG 64 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKT+LA ++A ELG + R TSGP + +AGDLA +L+NL + DVLFIDEIHR++ Sbjct: 65 PPGLGKTSLAMIIAAELGSSLRMTSGPALERAGDLAVMLSNLVEHDVLFIDEIHRIARPA 124 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++ Sbjct: 125 EEMLYLAMEDFRVDVIVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMD 184 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FYE +L+ ++ R A + G+ + EA EIA RSRGTPRIA RLLRRVRDFAEV I Sbjct: 185 FYEPTELEGVLARAAGILGIELGVEAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVI 244 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 TR++A AAL +D++G D+LD L+ + R+FGGGPVG+ T++ + E +E++ E Sbjct: 245 TRDVAKAALAVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCE 304 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 P++++ G + RTPRGR+ AW +L + P Sbjct: 305 PFLVRAGMVARTPRGRVATAQAWTYLCMTPP 335 >gi|15825807|pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a Length = 334 Score = 328 bits (840), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 160/318 (50%), Positives = 219/318 (68%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D+ + LRP++L+EF GQ L + +EAAK R E LDHVL GPPGLGKTTLA ++A Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 EL N TSGPV+ K GD+AA+LT+LE DVLFIDEIHRL+ VEE+LY A+EDFQ+D Sbjct: 73 SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +M+G+GPSA+S++I++ FTL+ ATTR GLL++PL+ FGI + L+FY +++LK I++R Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSAFGIILELDFYTVKELKEIIKRA 192 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A L + + D AA IA RSRGTPRIA RL +RVRD V A I +I + L I Sbjct: 193 ASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D G D+ D + L I + GGPVG+ ++A L D + ++ EPY++Q GF+ RTPR Sbjct: 253 DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312 Query: 316 GRLLMPIAWQHLGIDIPH 333 GR++ A++HL ++P Sbjct: 313 GRIVTEKAYKHLKYEVPE 330 >gi|222824270|ref|YP_002575844.1| Holliday junction DNA helicase, ATPase motor protein [Campylobacter lari RM2100] gi|254767416|sp|B9KDF4|RUVB_CAMLR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|222539491|gb|ACM64592.1| Holliday junction DNA helicase, ATPase motor protein [Campylobacter lari RM2100] Length = 336 Score = 328 bits (840), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 155/297 (52%), Positives = 218/297 (73%), Gaps = 1/297 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + + GQ NL++FI+AAK R E LDH+LF GP GLGKTTLA +++ E+ N Sbjct: 20 LRPSNFDGYIGQENIKKNLEIFIKAAKKRNECLDHILFSGPAGLGKTTLANIISYEMNAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 80 IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+ RL FY+ E+L I+++ A Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKNEELAIILEKAALKLNK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 AA EIA RSR TPRIA RLL+RVRDFA+V + I+ + A AL L ++++GFD Sbjct: 200 TCEKNAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIISEKRAKEALDSLGVNELGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318 +DLRYL ++ P+G+ +I+A LSE + IED+IEPY++ G+I+RT +GR+ Sbjct: 260 AMDLRYLELLTEA-KRKPIGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRI 315 >gi|15674280|ref|NP_268453.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes M1 GAS] gi|56808877|ref|ZP_00366587.1| COG2255: Holliday junction resolvasome, helicase subunit [Streptococcus pyogenes M49 591] gi|71909849|ref|YP_281399.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes MGAS5005] gi|94989546|ref|YP_597646.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes MGAS10270] gi|139472919|ref|YP_001127634.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes str. Manfredo] gi|209558619|ref|YP_002285091.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes NZ131] gi|306828269|ref|ZP_07461528.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus pyogenes ATCC 10782] gi|20140203|sp|Q9A1Y1|RUVB_STRP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|68715288|sp|Q5XEE4|RUVB_STRP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|123382465|sp|Q1JJ71|RUVB_STRPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231560|sp|A2RC05|RUVB_STRPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|172046748|sp|Q1J924|RUVB_STRPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226698786|sp|B5XJ28|RUVB_STRPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|13621359|gb|AAK33175.1| putative Holliday junction DNA helicase, subunit B [Streptococcus pyogenes M1 GAS] gi|71852631|gb|AAZ50654.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS5005] gi|94543054|gb|ABF33102.1| Holliday junction DNA helicase ruvB [Streptococcus pyogenes MGAS10270] gi|134271165|emb|CAM29377.1| Holliday junction DNA helicase, subunit B [Streptococcus pyogenes str. Manfredo] gi|209539820|gb|ACI60396.1| Holliday junction DNA helicase ruvB [Streptococcus pyogenes NZ131] gi|304429542|gb|EFM32592.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus pyogenes ATCC 10782] Length = 332 Score = 328 bits (840), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 162/323 (50%), Positives = 224/323 (69%), Gaps = 1/323 (0%) Query: 7 LLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +L NV E+ LRP+ L E+ GQ + +FIEAAK R E+LDHVL GPPGL Sbjct: 4 ILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGL 63 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTT+A V+A ELGVN + TSGP + KAGDL A+L LE D+LFIDEIHR+ + VEE+L Sbjct: 64 GKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVL 123 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF +D+M+G G ++RS+ ++L FTLI ATTR G+L+NPL+ RFGI + +Y+ Sbjct: 124 YSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQE 183 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +DL IV+R A + + + EAA ++A RSRGTPRIA RLL+RVRD+A++ IT +I Sbjct: 184 KDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQI 243 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D AL L +D+ G D +D + L + + GGPVG+ T+S ++E R+ +E++ EPY+I Sbjct: 244 TDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLI 303 Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328 Q+GF+ RT GR+ A++HLG Sbjct: 304 QKGFLMRTRTGRVATQKAYRHLG 326 >gi|313679564|ref|YP_004057303.1| holliday junction DNA helicase subunit ruvb [Oceanithermus profundus DSM 14977] gi|313152279|gb|ADR36130.1| Holliday junction DNA helicase subunit RuvB [Oceanithermus profundus DSM 14977] Length = 328 Score = 328 bits (840), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 169/312 (54%), Positives = 221/312 (70%), Gaps = 1/312 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+++ GQ + L V+++AA+ R E LDH+L GPPGLGKTTLA V+A ELGVN Sbjct: 7 LRPERLDDYVGQERLKAKLAVYLQAARQRGEPLDHLLLFGPPGLGKTTLAHVIAAELGVN 66 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRLS EE LYPAMEDF++D+++G+ Sbjct: 67 IRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLSRTAEEHLYPAMEDFKIDIVIGQ 126 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR+++++L RFTLI ATTR GL++ PL+ RFGI L FY E+L V+R A+L G Sbjct: 127 GPAARTIRLDLPRFTLIGATTRPGLISGPLRSRFGIVEHLEFYSEEELARGVERDARLMG 186 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 +AV EAA EI RSRGT R+A RL RRVRD+AEVA + ++ AL L +D++G Sbjct: 187 IAVEREAALEIGRRSRGTMRVAKRLFRRVRDYAEVAGEEVVSLARTRQALDALGLDELGL 246 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 + D R L + F GGPVG+ET++ + E +E++ EPY+IQ G IQRTPRGR+ Sbjct: 247 EARDRRILETMIVKFAGGPVGLETLATAMHEDPATLEEVHEPYLIQLGLIQRTPRGRVAT 306 Query: 321 PIAWQHLGIDIP 332 A++HLG P Sbjct: 307 ARAYEHLGHPPP 318 >gi|50913430|ref|YP_059402.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes MGAS10394] gi|50902504|gb|AAT86219.1| Holliday junction DNA helicase [Streptococcus pyogenes MGAS10394] Length = 356 Score = 328 bits (840), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 162/323 (50%), Positives = 224/323 (69%), Gaps = 1/323 (0%) Query: 7 LLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +L NV E+ LRP+ L E+ GQ + +FIEAAK R E+LDHVL GPPGL Sbjct: 28 ILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGL 87 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTT+A V+A ELGVN + TSGP + KAGDL A+L LE D+LFIDEIHR+ + VEE+L Sbjct: 88 GKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVL 147 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF +D+M+G G ++RS+ ++L FTLI ATTR G+L+NPL+ RFGI + +Y+ Sbjct: 148 YSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQE 207 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +DL IV+R A + + + EAA ++A RSRGTPRIA RLL+RVRD+A++ IT +I Sbjct: 208 KDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQI 267 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D AL L +D+ G D +D + L + + GGPVG+ T+S ++E R+ +E++ EPY+I Sbjct: 268 TDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLI 327 Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328 Q+GF+ RT GR+ A++HLG Sbjct: 328 QKGFLMRTRTGRVATQKAYRHLG 350 >gi|94993433|ref|YP_601531.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes MGAS10750] gi|94546941|gb|ABF36987.1| Holliday junction DNA helicase ruvB [Streptococcus pyogenes MGAS10750] Length = 356 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 162/323 (50%), Positives = 224/323 (69%), Gaps = 1/323 (0%) Query: 7 LLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +L NV E+ LRP+ L E+ GQ + +FIEAAK R E+LDHVL GPPGL Sbjct: 28 ILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGL 87 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTT+A V+A ELGVN + TSGP + KAGDL A+L LE D+LFIDEIHR+ + VEE+L Sbjct: 88 GKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVL 147 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF +D+M+G G ++RS+ ++L FTLI ATTR G+L+NPL+ RFGI + +Y+ Sbjct: 148 YSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQE 207 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +DL IV+R A + + + EAA ++A RSRGTPRIA RLL+RVRD+A++ IT +I Sbjct: 208 KDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQI 267 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D AL L +D+ G D +D + L + + GGPVG+ T+S ++E R+ +E++ EPY+I Sbjct: 268 TDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLI 327 Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328 Q+GF+ RT GR+ A++HLG Sbjct: 328 QKGFLMRTRTGRVATQKAYRHLG 350 >gi|325995675|gb|ADZ51080.1| Holliday junction DNA helicase [Helicobacter pylori 2018] gi|325997271|gb|ADZ49479.1| Holliday junction DNA helicase [Helicobacter pylori 2017] Length = 336 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|256832600|ref|YP_003161327.1| Holliday junction DNA helicase RuvB [Jonesia denitrificans DSM 20603] gi|256686131|gb|ACV09024.1| Holliday junction DNA helicase RuvB [Jonesia denitrificans DSM 20603] Length = 352 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 167/333 (50%), Positives = 227/333 (68%), Gaps = 1/333 (0%) Query: 2 MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 +D + L+S E A + LRPRTL EF GQ LK+ ++AAK R + DHVL Sbjct: 13 LDSQRLVSNGADDLERAAEAALRPRTLTEFVGQPIVREQLKLVLDAAKGRGASPDHVLLS 72 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A ELGV+ R TSGP I AGDLAA+L++L++ +VLFIDEIHRL+ Sbjct: 73 GPPGLGKTTLAMIIAAELGVSLRVTSGPAIQHAGDLAAVLSSLDEGEVLFIDEIHRLARP 132 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D++VG+G A ++ ++L RFT + ATTR GLL PL+DRFG L Sbjct: 133 AEELLYVAMEDFRVDVVVGKGAGASAIPLSLPRFTAVGATTRAGLLPAPLRDRFGFTGHL 192 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FY+ DL+ +V R A L G+ ++ +AA EIA RSRGTPRIA RLLRRVRD+A+V Sbjct: 193 DFYDATDLERVVHRSAHLLGVELSPQAAQEIATRSRGTPRIANRLLRRVRDWAQVKGTGV 252 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + A AAL +D +G D+LD LT + FGGGPVG+ T++ + E + +E + Sbjct: 253 LDLSAAQAALTVYEVDALGLDRLDRAVLTALCTRFGGGPVGLSTLAVTVGEEPETVETVA 312 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EP+++++G + RTPRGR+ P WQHLG+ P Sbjct: 313 EPFLVREGLMGRTPRGRIATPATWQHLGLTPPQ 345 >gi|308182557|ref|YP_003926684.1| Holliday junction DNA helicase RuvB [Helicobacter pylori PeCan4] gi|308064742|gb|ADO06634.1| Holliday junction DNA helicase RuvB [Helicobacter pylori PeCan4] Length = 336 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|328947935|ref|YP_004365272.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema succinifaciens DSM 2489] gi|328448259|gb|AEB13975.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema succinifaciens DSM 2489] Length = 380 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 158/319 (49%), Positives = 216/319 (67%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S +D + LRP L EF GQ NL VFI+AA+ R EALDH+ +GPPGLGKTTLAQ Sbjct: 50 SSDDVQENSLRPALLGEFLGQQTVKENLSVFIDAARKRHEALDHLFLIGPPGLGKTTLAQ 109 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 + A ELG +F+ TS P + K DLA +L+ + R V FIDEIHRL +EE+LY AMED+ Sbjct: 110 ITANELGADFKVTSAPALEKPKDLAGILSTISPRTVFFIDEIHRLKPAIEEMLYIAMEDY 169 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD ++G+G +AR+V+I + +FTL+ ATT+ G++++PL RFGI R +FY E+L +I+ Sbjct: 170 ELDWVIGQGAAARTVRIPIPKFTLVGATTKAGMVSSPLISRFGIIQRFSFYTKEELASII 229 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R AK+ + V D+AA +A SRGTPR+ R+LRR+RDFA+V + IT+ I L R Sbjct: 230 RRSAKILNVQVEDDAALLMAGCSRGTPRVTNRILRRMRDFAQVEGSGVITKSIVKKGLER 289 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D +G + D L I + FGGGPVG ET++ + E D +ED EPY+IQ G +QR Sbjct: 290 LGVDSLGLENYDREILLAIIKKFGGGPVGAETLAISIGESMDTLEDYYEPYLIQCGLLQR 349 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR+ A+ HLGI Sbjct: 350 TPRGRVATEKAYNHLGISF 368 >gi|208434335|ref|YP_002266001.1| Holliday junction DNA helicase [Helicobacter pylori G27] gi|226698779|sp|B5ZAF5|RUVB_HELPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|208432264|gb|ACI27135.1| Holliday junction DNA helicase [Helicobacter pylori G27] Length = 336 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDMIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|307637084|gb|ADN79534.1| Holliday junction DNA helicase [Helicobacter pylori 908] Length = 336 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|15674188|ref|NP_268363.1| Holliday junction DNA helicase B [Lactococcus lactis subsp. lactis Il1403] gi|12725271|gb|AAK06304.1|AE006449_10 DNA helicase RuvB [Lactococcus lactis subsp. lactis Il1403] Length = 324 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 159/307 (51%), Positives = 216/307 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ ++ GQ + L++FI+AAK R E LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 11 LRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+GP I K GDL A+L LE DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 71 IKQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +RSV ++L FTL+ ATTR G+L+NPL+ RFGI + +Y+ DL+ IV+R A + + Sbjct: 131 DGSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEV 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V D AA EIA+RSRGTPRIA RLL+RVRDFA++ + + I D AL L +D G D Sbjct: 191 EVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVDKAITDKALSILDVDAAGLD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVGI T++ ++E R+ +ED+ EPY+IQ+GF+ RT +GR + Sbjct: 251 YIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQ 310 Query: 322 IAWQHLG 328 A++HLG Sbjct: 311 RAYEHLG 317 >gi|38233960|ref|NP_939727.1| Holliday junction DNA helicase B [Corynebacterium diphtheriae NCTC 13129] gi|47606083|sp|P61530|RUVB_CORDI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|38200222|emb|CAE49906.1| holliday junction DNA-helicase [Corynebacterium diphtheriae] Length = 362 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 162/311 (52%), Positives = 220/311 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L+EF GQ + L + + AK+R A DHVL GPPGLGKTT+A ++A ELG + Sbjct: 45 LRPRSLDEFIGQPKVRDQLNLVLSGAKSRGVAPDHVLLSGPPGLGKTTMAMIIAYELGTS 104 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF++D++VG+G Sbjct: 105 LRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMAMEDFRIDVIVGKG 164 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + L+ FTL+ ATTR G+LT PL+DRFG ++ FYE+EDL +V R A + G+ Sbjct: 165 PGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYEVEDLTKVVVRAAAVLGV 224 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ +AA EIA RSRGTPRIA RLLRRVRDFAEV I A AAL+ +D+MG D Sbjct: 225 SIDHDAAVEIASRSRGTPRIANRLLRRVRDFAEVNADGHINLAAAQAALVVFDVDEMGLD 284 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + + GGGPVGI T++ + E +E++ EPY+++ G + RT RGR+ Sbjct: 285 RLDRAVLEALIKGHGGGPVGINTLALAVGEEPSTVEEVCEPYLVRAGMVTRTGRGRVATA 344 Query: 322 IAWQHLGIDIP 332 AW+HLG++ P Sbjct: 345 TAWRHLGLEPP 355 >gi|226366282|ref|YP_002784065.1| Holliday junction DNA helicase RuvB [Rhodococcus opacus B4] gi|254767436|sp|C1B4D1|RUVB_RHOOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226244772|dbj|BAH55120.1| Holliday junction DNA helicase RuvB [Rhodococcus opacus B4] Length = 365 Score = 327 bits (838), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 163/331 (49%), Positives = 227/331 (68%), Gaps = 1/331 (0%) Query: 3 DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 D E +S ++ D DI + LRP+ L +F GQ L++ + AK R DH+L G Sbjct: 10 DGESPVSADLVAGDGDIEASLRPKNLHDFIGQPRVREQLQLVLTGAKMRGGTPDHILLSG 69 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ Sbjct: 70 PPGLGKTSMAMIIAAELGSSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPA 129 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++ Sbjct: 130 EEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMD 189 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FYE +LK I+ R A + G+ + +EA EIA RSRGTPRIA RLLRRVRD+AEV + Sbjct: 190 FYEPAELKQILMRSAGILGVQLGEEAGAEIASRSRGTPRIANRLLRRVRDYAEVRADGVV 249 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 TREIA AAL +D++G D+LD L+ + R+FGGGPVG+ T++ + E +E++ E Sbjct: 250 TREIAHAALAVYDVDQLGLDRLDRSVLSALVRSFGGGPVGVSTLAVAVGEEPATVEEVCE 309 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 P++++ G I RTPRGR+ AW LG+ P Sbjct: 310 PFLVRAGMIARTPRGRVATAAAWTQLGLTPP 340 >gi|15645673|ref|NP_207850.1| Holliday junction DNA helicase RuvB [Helicobacter pylori 26695] gi|3122841|sp|O25699|RUVB_HELPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|2314203|gb|AAD08100.1| Holliday junction DNA helicase (ruvB) [Helicobacter pylori 26695] Length = 336 Score = 327 bits (838), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 161/322 (50%), Positives = 231/322 (71%), Gaps = 5/322 (1%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 L +SQE + LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGK Sbjct: 11 LDFEISQEVS----LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGK 66 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 T+++ ++A+E+ N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYP Sbjct: 67 TSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYP 126 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMEDF+LD+++G GP+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY + Sbjct: 127 AMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYNPSE 186 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L I+++ A + E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I Sbjct: 187 LALIIKKAAVKLNQDIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITL 246 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L ++++GFD+ DL YL+++A N G PVG+ TI+A + E IED+IEP+++ Sbjct: 247 HALNELGVNELGFDEADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLAN 305 Query: 308 GFIQRTPRGRLLMPIAWQHLGI 329 G+++RT +GR+ P + L I Sbjct: 306 GYLERTAKGRIATPKTHELLKI 327 >gi|15611434|ref|NP_223085.1| Holliday junction DNA helicase RuvB [Helicobacter pylori J99] gi|6685960|sp|Q9ZM57|RUVB_HELPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|4154888|gb|AAD05938.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helicobacter pylori J99] Length = 336 Score = 327 bits (838), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELSLIIKKAAAKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLSITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|145220213|ref|YP_001130922.1| Holliday junction DNA helicase B [Prosthecochloris vibrioformis DSM 265] gi|189046041|sp|A4SG11|RUVB_PROVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|145206377|gb|ABP37420.1| Holliday junction DNA helicase RuvB [Chlorobium phaeovibrioides DSM 265] Length = 346 Score = 327 bits (838), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 161/297 (54%), Positives = 213/297 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+FTGQ NLKVFI AA+ R EALDHVL GPPGLGKTTLA ++A E+G + Sbjct: 21 IRPARMEDFTGQQRLTDNLKVFISAARMREEALDHVLLSGPPGLGKTTLAHIIAAEMGSS 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP++ KAG+LA LLT L+ DVLFIDEIHR+ VEE LY AMEDF++D+M+ G Sbjct: 81 IRATSGPLLDKAGNLAGLLTGLKRGDVLFIDEIHRMPPAVEEYLYSAMEDFRIDIMIDSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR+V++ + FTL+ ATTR GLLT+PL+ RFGI R ++Y + L+ IV R + + + Sbjct: 141 PSARAVQLKIEPFTLVGATTRSGLLTSPLRARFGINSRFDYYSPDLLEGIVMRASGILSI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EIA RSRGTPRIA RLLRR RDFA+V A I+R IA L L ID+ G D Sbjct: 201 GIDQDAASEIAGRSRGTPRIANRLLRRARDFAQVEKAAVISRRIAMKTLECLDIDEEGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318 +D + + I F GGPVG+ +++ + E +D IE++ EPY+IQ G++ RTPRGR+ Sbjct: 261 DMDKKIMDTIVNRFSGGPVGVASLAVSVGEEQDTIEEVYEPYLIQAGYLSRTPRGRV 317 >gi|315586379|gb|ADU40760.1| crossover junction ATP-dependent DNA helicase RuvB [Helicobacter pylori 35A] Length = 336 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|117928550|ref|YP_873101.1| Holliday junction DNA helicase RuvB [Acidothermus cellulolyticus 11B] gi|171460815|sp|A0LUK5|RUVB_ACIC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|117649013|gb|ABK53115.1| Holliday junction DNA helicase subunit RuvB [Acidothermus cellulolyticus 11B] Length = 367 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 168/320 (52%), Positives = 217/320 (67%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S E A + LRPR L+EF GQ L + ++ AK R DH+L GPPGLGKTTLA Sbjct: 26 SDEHAVEAALRPRRLDEFVGQQRVRDQLSLILDGAKQRGRPPDHILLSGPPGLGKTTLAM 85 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +VA EL R TSGP I AGDLAA+LT L + +VLF+DEIHR++ EE+LY AMEDF Sbjct: 86 IVAAELNTPIRVTSGPAIQHAGDLAAVLTQLSEGEVLFLDEIHRMARPAEEMLYLAMEDF 145 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 ++D++VG+GP A + + L+ FTLI ATTR GLL PL+DRFG RL+FYE DL+ IV Sbjct: 146 RVDVVVGKGPGASVIPLELAPFTLIGATTRTGLLPGPLRDRFGFTARLDFYEPADLERIV 205 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L + +T + A EIA RSRGTPRIA RLLRRVRD+AEV IT E+A AAL Sbjct: 206 HRSARLLDVRITPDGAAEIARRSRGTPRIANRLLRRVRDYAEVRADGVITCEVAQAALAV 265 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 +D+ G D+LD L + R FGGGPVG+ T++ + E + +E++ EP++ + GF+ R Sbjct: 266 YEVDEHGLDRLDRAVLDALVRRFGGGPVGLGTVAVAVGEEPETVEEVAEPFLFRAGFLIR 325 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ AW+HLGI P Sbjct: 326 TPRGRMATAAAWRHLGITPP 345 >gi|145224406|ref|YP_001135084.1| Holliday junction DNA helicase B [Mycobacterium gilvum PYR-GCK] gi|315444738|ref|YP_004077617.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium sp. Spyr1] gi|189046038|sp|A4TBQ5|RUVB_MYCGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|145216892|gb|ABP46296.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium gilvum PYR-GCK] gi|315263041|gb|ADT99782.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium sp. Spyr1] Length = 357 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 165/330 (50%), Positives = 228/330 (69%), Gaps = 1/330 (0%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 +RE + V + D D SL RPR+L EF GQ L++ +E AK R DH+L GP Sbjct: 16 EREVTPALTVGEGDIDASL-RPRSLGEFIGQPRVREQLQLVLEGAKNRGGTPDHILLSGP 74 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ E Sbjct: 75 PGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLIEGDVLFIDEIHRIARPAE 134 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++F Sbjct: 135 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 194 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE +L+ ++ R A + G+ + EA EIA RSRGTPRIA RLLRRVRD+AEV IT Sbjct: 195 YEPAELERVLARSAGILGIELGAEAGAEIARRSRGTPRIANRLLRRVRDYAEVRADGVIT 254 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 R+IA AL +D++G D+LD L+ + R+FGGGPVG+ T++ + E +E++ EP Sbjct: 255 RDIAKYALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCEP 314 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++ G I RTPRGR+ AW+HLG+ P Sbjct: 315 FLVRAGMIARTPRGRVATAQAWKHLGMTPP 344 >gi|302338527|ref|YP_003803733.1| Holliday junction DNA helicase RuvB [Spirochaeta smaragdinae DSM 11293] gi|301635712|gb|ADK81139.1| Holliday junction DNA helicase RuvB [Spirochaeta smaragdinae DSM 11293] Length = 348 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 162/328 (49%), Positives = 219/328 (66%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 + + L +EDA LRP+ L+EF GQ NL VFI AAK R E+LDHV GP Sbjct: 5 NSDSFLEAEYREEDALEGRLRPQRLKEFQGQRALKENLSVFISAAKERQESLDHVFLSGP 64 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A E+G F+ TS P + K DLA +LT L + +V FIDE+HRL +E Sbjct: 65 PGLGKTTLAGILANEMGAEFKVTSAPALEKPKDLAGILTTLGEGNVFFIDEVHRLKPALE 124 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMED+++D +VG+GP+AR+++I L FTLI ATT+ G +T PL RFGI +R++F Sbjct: 125 EMLYIAMEDYEIDWIVGQGPAARTIRIPLPPFTLIGATTKAGQVTGPLFSRFGITVRMDF 184 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y DLK I+ R A + +++ D+A IA SRGTPR+A RLLRR+RDFA++ +I Sbjct: 185 YTEADLKAIIARSASILSVSIGDDAVAAIAQCSRGTPRVANRLLRRMRDFAQILGNGSID 244 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 I L RL ID G ++ D L I + GGPVG ET++ + E +++ED EP Sbjct: 245 AGIVSEGLKRLEIDHFGLEKHDREILRTIIEQYDGGPVGAETLAISVGEAVESLEDFYEP 304 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330 ++IQ+GF+QRTPRGR P+A+QHLGID Sbjct: 305 FLIQRGFLQRTPRGRTATPLAYQHLGID 332 >gi|15825813|pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant Length = 334 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 160/318 (50%), Positives = 219/318 (68%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D+ + LRP++L+EF GQ L + +EAAK R E LDHVL GPPGLGKTTLA ++A Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 EL N TSGPV+ K GD+AA+LT+LE DVLFIDEIHRL+ VEE+LY A+EDFQ+D Sbjct: 73 SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +M+G+GPSA+S++I++ FTL+ ATTR GLL++PL+ RFGI + L+FY +++LK I++R Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRA 192 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A L + + D AA IA RSRGT RIA RL +RVRD V A I +I + L I Sbjct: 193 ASLMDVEIEDAAAEMIAKRSRGTGRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D G D+ D + L I + GGPVG+ ++A L D + ++ EPY++Q GF+ RTPR Sbjct: 253 DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312 Query: 316 GRLLMPIAWQHLGIDIPH 333 GR++ A++HL ++P Sbjct: 313 GRIVTEKAYKHLKYEVPE 330 >gi|229824010|ref|ZP_04450079.1| hypothetical protein GCWU000282_01314 [Catonella morbi ATCC 51271] gi|229786364|gb|EEP22478.1| hypothetical protein GCWU000282_01314 [Catonella morbi ATCC 51271] Length = 342 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 163/329 (49%), Positives = 221/329 (67%), Gaps = 1/329 (0%) Query: 1 MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M E +LS N ED ++ LRP L E+ GQ + + ++I+AAK R EALDHVL Sbjct: 1 MSHDERMLSGNWQPEDEGNLLSLRPSRLSEYIGQSKIKDEIAIYIQAAKQREEALDHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTT+A V+A E+GV +TSGP I ++GDL ALL L D+LFIDEIHRL Sbjct: 61 YGPPGLGKTTMAMVIANEMGVGLHTTSGPAIERSGDLLALLNELSPGDILFIDEIHRLPR 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 ++EE+LY AMED+ +D+++G+GPSA V L FTLI ATTR G L+ PL+DRFGI Sbjct: 121 VIEEVLYSAMEDYFVDIIIGQGPSAHPVHFELPPFTLIGATTRAGSLSKPLRDRFGIVSH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + FY ++L IV+R A + + E A EI++RSRGTPRIA R+L+RVRDFA+V Sbjct: 181 MQFYTPDELALIVERSADVFETRIDSEGAREISLRSRGTPRIANRILKRVRDFAQVKGQG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 + +A AL L ID+ G D +D + L+ + +GGGPVG+ T++ + E + +ED+ Sbjct: 241 VVDLRMAQTALEVLEIDQYGLDAIDRKILSCLIEFYGGGPVGLNTLAVNIGEDTETLEDM 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EPY++Q GFIQRTPRGR +A++HLG Sbjct: 301 YEPYLMQNGFIQRTPRGRQATALAYEHLG 329 >gi|308061740|gb|ADO03628.1| Holliday junction DNA helicase RuvB [Helicobacter pylori Cuz20] Length = 338 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 159/311 (51%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL+V I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDFIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|21909568|ref|NP_663836.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes MGAS315] gi|28894945|ref|NP_801295.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes SSI-1] gi|25009239|sp|Q8K8X8|RUVB_STRP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|97190363|sp|Q48VY1|RUVB_STRPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|21903749|gb|AAM78639.1| putative Holliday junction DNA helicase subunit B [Streptococcus pyogenes MGAS315] gi|28810190|dbj|BAC63128.1| putative Holliday junction DNA helicase, subunit B [Streptococcus pyogenes SSI-1] Length = 332 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 158/307 (51%), Positives = 218/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + +FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP + KAGDL A+L LE D+LFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RS+ ++L FTLI ATTR G+L+NPL+ RFGI + +Y+ +DL IV+R A + + Sbjct: 140 DTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEI 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA ++A RSRGTPRIA RLL+RVRD+A++ IT +I D AL L +D+ G D Sbjct: 200 KIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQITDRALTMLDVDREGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +E++ EPY+IQ+GF+ RT GR+ Sbjct: 260 YIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLIQKGFLMRTRTGRVATQ 319 Query: 322 IAWQHLG 328 A++HLG Sbjct: 320 KAYRHLG 326 >gi|283954985|ref|ZP_06372492.1| LOW QUALITY PROTEIN: Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni 414] gi|283793483|gb|EFC32245.1| LOW QUALITY PROTEIN: Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp. jejuni 414] Length = 335 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 154/309 (49%), Positives = 222/309 (71%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + GQ NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E+G N Sbjct: 20 LRPSNFNGYIGQENIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS +EE+LY AMED++LD+++G G Sbjct: 80 IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYSAMEDYRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+ RL FY+ +L I+Q+ A Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++AA EIA RSR TPRIA RLL+RVRDFA+V+ + IT + + AL L ++++GFD Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVSDEEIITEKRTNEALNSLGVNELGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +DL+YL ++ P+G+ +I+A LSE + +ED+IEPY++ G+I+RT +GR+ Sbjct: 260 AMDLKYLELLTAA-KQRPIGLASIAAALSEDENTVEDVIEPYLLANGYIERTAKGRIAST 318 Query: 322 IAWQHLGID 330 ++ L ++ Sbjct: 319 KSYNALKLN 327 >gi|109947700|ref|YP_664928.1| Holliday junction DNA helicase RuvB [Helicobacter acinonychis str. Sheeba] gi|122973263|sp|Q17WP7|RUVB_HELAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|109714921|emb|CAJ99929.1| holliday junction DNA helicase [Helicobacter acinonychis str. Sheeba] Length = 336 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E + GQ + +NL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPDLWENYIGQEKIKNNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTRVG+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRVGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDESTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|71902701|ref|YP_279504.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes MGAS6180] gi|71801796|gb|AAX71149.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS6180] Length = 356 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 158/307 (51%), Positives = 218/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + +FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 44 LRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 103 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP + KAGDL A+L LE D+LFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 104 LKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAG 163 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RS+ ++L FTLI ATTR G+L+NPL+ RFGI + +Y+ +DL IV+R A + + Sbjct: 164 DTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEI 223 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA ++A RSRGTPRIA RLL+RVRD+A++ IT +I D AL L +D+ G D Sbjct: 224 KIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQITDRALTMLDVDREGLD 283 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +E++ EPY+IQ+GF+ RT GR+ Sbjct: 284 YIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLIQKGFLMRTRTGRVATQ 343 Query: 322 IAWQHLG 328 A++HLG Sbjct: 344 KAYRHLG 350 >gi|300172984|ref|YP_003772150.1| Holliday junction DNA Helicase RuvB [Leuconostoc gasicomitatum LMG 18811] gi|299887363|emb|CBL91331.1| holliday junction DNA helicase RuvB [Leuconostoc gasicomitatum LMG 18811] Length = 352 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 162/319 (50%), Positives = 219/319 (68%), Gaps = 1/319 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N +++ + SL RP+ L E+ GQ L V+I AAK R EALDHVL GPPGLGKTTL Sbjct: 29 NEAEQSNEFSL-RPQFLREYIGQAALKEELNVYISAAKQREEALDHVLLFGPPGLGKTTL 87 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+ V+ ++TSGP I K GDL ALL LE D+LFIDEIHRL +EEI+Y AME Sbjct: 88 AMIIANEMAVHIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTNIEEIMYSAME 147 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+ +D+MVG+GP+AR+V L FTLI ATTR G+L+ PL+DRFGI + +Y E+L+ Sbjct: 148 DYFVDIMVGQGPTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINAMAYYTPEELQE 207 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R + + + A E+A+RSRGTPRIA RLL+RVRDFA+V I + I D AL Sbjct: 208 IVVRSSDIFNAPIKLAGAYEVALRSRGTPRIANRLLKRVRDFAQVEGKSAIDKAIVDIAL 267 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +L +D G D+ D ++L + + GGPVG+ TI+A + E + +E ++EPY++Q GF+ Sbjct: 268 DKLRVDNRGLDETDHKFLGTMIEYYKGGPVGLNTIAANIGEEAETLESMVEPYLLQIGFL 327 Query: 311 QRTPRGRLLMPIAWQHLGI 329 QRTPRGR++ A+ HL I Sbjct: 328 QRTPRGRVVTESAYAHLKI 346 >gi|210134583|ref|YP_002301022.1| Holliday junction DNA helicase RuvB [Helicobacter pylori P12] gi|226698778|sp|B6JKW4|RUVB_HELP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|210132551|gb|ACJ07542.1| holliday junction DNA helicase [Helicobacter pylori P12] Length = 336 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELSLIIKKAAVKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|188527198|ref|YP_001909885.1| Holliday junction DNA helicase RuvB [Helicobacter pylori Shi470] gi|238691905|sp|B2USM3|RUVB_HELPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|188143438|gb|ACD47855.1| Holliday junction DNA helicase B [Helicobacter pylori Shi470] gi|308063250|gb|ADO05137.1| Holliday junction DNA helicase RuvB [Helicobacter pylori Sat464] Length = 336 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E++ GQ + SNL+V I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 LKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|291301297|ref|YP_003512575.1| Holliday junction DNA helicase RuvB [Stackebrandtia nassauensis DSM 44728] gi|290570517|gb|ADD43482.1| Holliday junction DNA helicase RuvB [Stackebrandtia nassauensis DSM 44728] Length = 359 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 162/311 (52%), Positives = 220/311 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LEE GQ L++ + A+ R+ A DH+L GPPGLGKTTLA +VA ELGV+ Sbjct: 30 VRPAKLEELIGQARVREQLELLLSGAQQRSAAPDHILLSGPPGLGKTTLAMIVAAELGVS 89 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I ++GDLAA+LT+L DVLFIDEIHR++ EE+LY AMEDF++D+MVG+G Sbjct: 90 LRQTSGPAIERSGDLAAVLTSLGPGDVLFIDEIHRIARPAEELLYTAMEDFRVDVMVGKG 149 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ ++L FTL+ ATTR GLLT PL+DRFG +L+FY+ +L++IV R A++ + Sbjct: 150 PGATAIPLDLEPFTLVGATTRSGLLTGPLRDRFGFVGQLDFYDPPELESIVHRTARILSV 209 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +TD A EIA RSRGTPRIA RLLRRVRDFA+V +T+E+A AAL +D +G D Sbjct: 210 DITDSGAREIAGRSRGTPRIANRLLRRVRDFAQVRADGHVTQEVASAALALYDVDDIGLD 269 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD LT + +FGGGPVG+ T++ + E D +E++ EPY+++ G + RTPRGR+ Sbjct: 270 RLDRAVLTALIESFGGGPVGLTTLAVAVGEEPDTVEEVCEPYLVRSGLLARTPRGRVATV 329 Query: 322 IAWQHLGIDIP 332 W+HLG P Sbjct: 330 HGWRHLGRTPP 340 >gi|317177200|dbj|BAJ54989.1| Holliday junction DNA helicase B [Helicobacter pylori F16] Length = 336 Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E++ GQ + SNL+V I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|260654962|ref|ZP_05860450.1| holliday junction DNA helicase RuvB [Jonquetella anthropi E3_33 E1] gi|260630277|gb|EEX48471.1| holliday junction DNA helicase RuvB [Jonquetella anthropi E3_33 E1] Length = 347 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 163/312 (52%), Positives = 218/312 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP TL EF GQ E L ++++AA+ R E LDH LF GPPGLGKTTL+ ++A E+G + Sbjct: 23 LRPLTLAEFNGQSEIKEKLSIYMQAARLRGEPLDHTLFYGPPGLGKTTLSGIIAHEMGGS 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R T+GP + K GDLAA+LT+L+D DVLFIDEIHR+SI EE+LY AMEDF + L+VG+G Sbjct: 83 LRVTTGPALEKPGDLAAILTSLQDGDVLFIDEIHRMSISTEEVLYSAMEDFSIHLIVGKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+V + + +FTL+ ATTR+GLL++PL+ RFGI +L Y+ +L I+QRGA L + Sbjct: 143 PLARNVTVPMPKFTLVGATTRLGLLSSPLRARFGIVEQLRLYDELELCQILQRGAGLLNV 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + E IA RSRGTPR+A RLLRRVRD A+V I + A+ L +D GF+ Sbjct: 203 SASSEGLRAIARRSRGTPRVALRLLRRVRDVADVTGQAQIDEALVSQAMDMLGLDDRGFN 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R +T + F GGPVG+ TI+A L+E IED+ EPY+IQQG I+RTPRGR Sbjct: 263 AGDRRIITTVVELFSGGPVGLSTIAAALNEEPQTIEDIYEPYLIQQGMIERTPRGRKATE 322 Query: 322 IAWQHLGIDIPH 333 A+++LG+ +P Sbjct: 323 KAYEYLGLPVPQ 334 >gi|78189723|ref|YP_380061.1| Holliday junction DNA helicase RuvB [Chlorobium chlorochromatii CaD3] gi|97189984|sp|Q3APQ7|RUVB_CHLCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|78171922|gb|ABB29018.1| Holliday junction DNA helicase RuvB [Chlorobium chlorochromatii CaD3] Length = 352 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 163/306 (53%), Positives = 216/306 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+F GQ NLKVFI AAK R +ALDHVL GPPGLGKTTLA ++A E+G + Sbjct: 21 IRPIRMEDFAGQQRLTDNLKVFISAAKMRGDALDHVLLSGPPGLGKTTLAYIIASEMGSS 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP++ KAG+LA LLT L+ D+LFIDEIHR+ +VEE LY AMEDF++D+M+ G Sbjct: 81 IKATSGPLLDKAGNLAGLLTGLQKGDILFIDEIHRMPPMVEEYLYSAMEDFRIDIMLDSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR+V++ + FTL+ ATTR GLLT+PL+ RFGI R ++YE E L I+ R + + G+ Sbjct: 141 PSARAVQLRIEPFTLVGATTRSGLLTSPLRARFGINSRFDYYEPELLTRIIIRASSILGI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EIA RSRGTPRIA RLLRR RDFA+V TITR IA L L ID+ G D Sbjct: 201 GIEPDAAAEIAGRSRGTPRIANRLLRRARDFAQVDGISTITRTIAMKTLECLEIDEEGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + + I F GGPVGI +++ + E RD IE++ EPY+IQ G++ RT RGR+ Sbjct: 261 EMDKKIMDTIVNKFSGGPVGIASLAVSVGEERDTIEEVYEPYLIQAGYLARTTRGRVATR 320 Query: 322 IAWQHL 327 A+ Sbjct: 321 KAFSRF 326 >gi|217031615|ref|ZP_03437120.1| hypothetical protein HPB128_21g173 [Helicobacter pylori B128] gi|298736671|ref|YP_003729199.1| Holliday junction DNA helicase RuvB [Helicobacter pylori B8] gi|216946815|gb|EEC25411.1| hypothetical protein HPB128_21g173 [Helicobacter pylori B128] gi|298355863|emb|CBI66735.1| holliday junction DNA helicase RuvB [Helicobacter pylori B8] Length = 336 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 161/325 (49%), Positives = 232/325 (71%), Gaps = 7/325 (2%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 L +SQE + LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGK Sbjct: 11 LDFEISQEVS----LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGK 66 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 T+++ ++A+E+ N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYP Sbjct: 67 TSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYP 126 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMEDF+LD+++G GP+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY + Sbjct: 127 AMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSE 186 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 L I+++ A + +E+ EIA RSRGTPRIA RLL+RVRDFA V ++ + I Sbjct: 187 LALIIKKAAAKLNQDIKEESTDEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITL 246 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 AL L ++++GFD+ DL YL+++A N G PVG+ TI+A + E IED+IEP+++ Sbjct: 247 HALNELGVNELGFDEADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLAN 305 Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332 G+++RT +GR+ P H + IP Sbjct: 306 GYLERTAKGRIATP--KTHALLKIP 328 >gi|317010664|gb|ADU84411.1| Holliday junction DNA helicase RuvB [Helicobacter pylori SouthAfrica7] Length = 336 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 155/308 (50%), Positives = 226/308 (73%), Gaps = 1/308 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E++ GQ + +NL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPDLWEDYIGQEKIKNNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNALGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDESTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGI 329 + L I Sbjct: 320 KTYALLKI 327 >gi|172046219|sp|Q1JP25|RUVB_STRPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|172046744|sp|Q1JE69|RUVB_STRPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB Length = 332 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 158/307 (51%), Positives = 218/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + +FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP + KAGDL A+L LE D+LFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RS+ ++L FTLI ATTR G+L+NPL+ RFGI + +Y+ +DL IV+R A + + Sbjct: 140 DTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEI 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA ++A RSRGTPRIA RLL+RVRD+A++ IT +I D AL L +D+ G D Sbjct: 200 KIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQITDRALTMLDVDREGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +E++ EPY+IQ+GF+ RT GR+ Sbjct: 260 YIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLIQKGFLMRTRTGRVATQ 319 Query: 322 IAWQHLG 328 A++HLG Sbjct: 320 KAYRHLG 326 >gi|295425861|ref|ZP_06818541.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus amylolyticus DSM 11664] gi|295064464|gb|EFG55392.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus amylolyticus DSM 11664] Length = 341 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 164/325 (50%), Positives = 223/325 (68%), Gaps = 1/325 (0%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 +++ +E ++SL RP++L+++ GQ + V+I+AA+ R EALDHVL GPPGLGKT Sbjct: 16 AQDAEEEQVEMSL-RPQSLDQYLGQARVKKEMAVYIKAARQRDEALDHVLLYGPPGLGKT 74 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA V+A ELGV+ +STSGP I KAGDL ALL+ L+ DVLFIDEIHRL +EE+LY A Sbjct: 75 TLAFVIAHELGVHLKSTSGPAIEKAGDLVALLSELDPGDVLFIDEIHRLPKPIEEVLYSA 134 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDF +D+M+GEG + +V + L FTLI ATT G L+ PL+DRFGI + +Y + +L Sbjct: 135 MEDFYVDIMIGEGETTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTVNEL 194 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + I+QR + ++ EAA E+A RSRGTPR+A RLL+RVRDFAEV TI+ + + Sbjct: 195 EQIIQRSGDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEDTISLKTTEH 254 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL +L +D G D D + L + +GGGPVGI T++A + E D IE L EPY++Q G Sbjct: 255 ALKQLQVDDEGLDLTDRKLLRTMIEGYGGGPVGIRTLAASVGEDIDTIESLYEPYLLQHG 314 Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333 FI TPRGR+ A+ LG+ P+ Sbjct: 315 FILLTPRGRMATDKAYAQLGLPNPN 339 >gi|94987667|ref|YP_595768.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes MGAS9429] gi|94991534|ref|YP_599633.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes MGAS2096] gi|94541175|gb|ABF31224.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS9429] gi|94545042|gb|ABF35089.1| Holliday junction DNA helicase ruvB [Streptococcus pyogenes MGAS2096] Length = 356 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 158/307 (51%), Positives = 218/307 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + +FIEAAK R E+LDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 44 LRPQYLREYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 103 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP + KAGDL A+L LE D+LFIDEIHR+ + VEE+LY AMEDF +D+M+G G Sbjct: 104 LKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAG 163 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++RS+ ++L FTLI ATTR G+L+NPL+ RFGI + +Y+ +DL IV+R A + + Sbjct: 164 DTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEI 223 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA ++A RSRGTPRIA RLL+RVRD+A++ IT +I D AL L +D+ G D Sbjct: 224 KIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQITDRALTMLDVDREGLD 283 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ T+S ++E R+ +E++ EPY+IQ+GF+ RT GR+ Sbjct: 284 YIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLIQKGFLMRTRTGRVATQ 343 Query: 322 IAWQHLG 328 A++HLG Sbjct: 344 KAYRHLG 350 >gi|297379609|gb|ADI34496.1| Holliday junction DNA helicase RuvB [Helicobacter pylori v225d] Length = 336 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E++ GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAASKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|78187473|ref|YP_375516.1| Holliday junction DNA helicase RuvB [Chlorobium luteolum DSM 273] gi|97190196|sp|Q3B2F8|RUVB_PELLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|78167375|gb|ABB24473.1| Holliday junction DNA helicase RuvB [Chlorobium luteolum DSM 273] Length = 344 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 158/297 (53%), Positives = 216/297 (72%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR +E+FTGQ NLKVFI AA+ R +ALDHVL GPPGLGKTTLA ++A E+G + Sbjct: 21 IRPRRMEDFTGQQRLTDNLKVFISAARMRGDALDHVLLSGPPGLGKTTLAHIIAEEMGGS 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP++ KAG+LA +LT+L+ DVLFIDEIHR+ VEE LY AMEDF++D+M+ G Sbjct: 81 LKATSGPMLDKAGNLAGILTSLQKGDVLFIDEIHRMPPAVEEYLYSAMEDFRIDIMLDSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR+V++ + FTL+ ATTR GLLT PL+ RFGI R ++Y E L+TI+ R + + G+ Sbjct: 141 PSARAVQLKVEPFTLVGATTRSGLLTAPLRARFGISNRFDYYPPELLETILMRSSTILGI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EIA RSRGTPRIA RLLRR RDFA+V + I+R A L L ID+ G D Sbjct: 201 GIERDAASEIAGRSRGTPRIANRLLRRARDFAQVDGMEIISRPTAMKTLDSLEIDEEGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318 ++D + + + F GGPVG+ +++ + E +D IE++ EPY+IQ G++ RTPRGR+ Sbjct: 261 EMDKKIMDAVVNRFSGGPVGVGSLAVSVGEEQDTIEEVYEPYLIQAGYLSRTPRGRV 317 >gi|19745233|ref|NP_606369.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes MGAS8232] gi|19747326|gb|AAL96868.1| putative Holliday junction DNA helicase, subunit B [Streptococcus pyogenes MGAS8232] Length = 354 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 161/323 (49%), Positives = 224/323 (69%), Gaps = 1/323 (0%) Query: 7 LLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +L NV E+ LRP+ L E+ GQ + +FIEAAK R E+LDHVL GPPGL Sbjct: 26 ILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGL 85 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTT+A V+A ELGVN + TSGP + KAGDL A+L LE D+LFIDEIHR+ + VEE+L Sbjct: 86 GKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVL 145 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF +D+M+G G ++RS+ ++L FTLI ATTR G+L+NPL+ RFGI + +Y+ Sbjct: 146 YSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQE 205 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +DL IV+R A + + + EAA ++A RSRGTPRIA RLL+RVRD+A++ IT +I Sbjct: 206 KDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQI 265 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D AL L +D+ G + +D + L + + GGPVG+ T+S ++E R+ +E++ EPY+I Sbjct: 266 TDRALTMLDVDREGLNYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLI 325 Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328 Q+GF+ RT GR+ A++HLG Sbjct: 326 QKGFLMRTRTGRVATQKAYRHLG 348 >gi|24212372|sp|Q8P302|RUVB_STRP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB Length = 332 Score = 326 bits (835), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 161/323 (49%), Positives = 224/323 (69%), Gaps = 1/323 (0%) Query: 7 LLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +L NV E+ LRP+ L E+ GQ + +FIEAAK R E+LDHVL GPPGL Sbjct: 4 ILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGL 63 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTT+A V+A ELGVN + TSGP + KAGDL A+L LE D+LFIDEIHR+ + VEE+L Sbjct: 64 GKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVL 123 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF +D+M+G G ++RS+ ++L FTLI ATTR G+L+NPL+ RFGI + +Y+ Sbjct: 124 YSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQE 183 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +DL IV+R A + + + EAA ++A RSRGTPRIA RLL+RVRD+A++ IT +I Sbjct: 184 KDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQI 243 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D AL L +D+ G + +D + L + + GGPVG+ T+S ++E R+ +E++ EPY+I Sbjct: 244 TDRALTMLDVDREGLNYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLI 303 Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328 Q+GF+ RT GR+ A++HLG Sbjct: 304 QKGFLMRTRTGRVATQKAYRHLG 326 >gi|111023846|ref|YP_706818.1| Holliday junction DNA helicase B [Rhodococcus jostii RHA1] gi|122955048|sp|Q0S1C6|RUVB_RHOSR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|110823376|gb|ABG98660.1| holliday junction DNA helicase [Rhodococcus jostii RHA1] Length = 365 Score = 326 bits (835), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 162/331 (48%), Positives = 227/331 (68%), Gaps = 1/331 (0%) Query: 3 DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 D E +S ++ D DI + LRP+ L +F GQ L++ + AK R DH+L G Sbjct: 10 DEESPVSADLVAGDGDIEASLRPKNLHDFIGQPRVREQLQLVLTGAKMRGGTPDHILLSG 69 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ Sbjct: 70 PPGLGKTSMAMIIAAELGSSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPA 129 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++ Sbjct: 130 EEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMD 189 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FYE +L+ I+ R A + G+ + +EA EIA RSRGTPRIA RLLRRVRD+AEV + Sbjct: 190 FYEPAELQQILMRSAGILGVQLGEEAGAEIANRSRGTPRIANRLLRRVRDYAEVRADGVV 249 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 TREIA AAL +D++G D+LD L+ + R+FGGGPVG+ T++ + E +E++ E Sbjct: 250 TREIAHAALAVYDVDQLGLDRLDRSVLSALVRSFGGGPVGVSTLAVAVGEEPATVEEVCE 309 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 P++++ G I RTPRGR+ AW LG+ P Sbjct: 310 PFLVRAGMIARTPRGRVATAAAWTQLGLTPP 340 >gi|317181730|dbj|BAJ59514.1| Holliday junction DNA helicase B [Helicobacter pylori F57] Length = 336 Score = 326 bits (835), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E++ GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAKGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|227432399|ref|ZP_03914389.1| Holliday junction DNA helicase B [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351838|gb|EEJ42074.1| Holliday junction DNA helicase B [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 369 Score = 326 bits (835), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 162/318 (50%), Positives = 216/318 (67%), Gaps = 1/318 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N ++ +++SL RP+ L E+ GQ L V+I AAK R EALDHVL GPPGLGKTTL Sbjct: 46 NDEEQRSELSL-RPQFLREYIGQEALKEELNVYISAAKQREEALDHVLLFGPPGLGKTTL 104 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+ VN ++TSGP I K GDL ALL LE D+LFIDEIHR+ +EEI+Y AME Sbjct: 105 AMIIANEMNVNIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRIPTNIEEIMYSAME 164 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+ +D+MVG+GP+AR V L FTLI ATTR G+L+ PL+DRFGI L +Y E+L+ Sbjct: 165 DYFVDIMVGQGPTARPVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINSLQYYTPEELQQ 224 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R A + + E A EI++RSRGTPRIA RLL+RVRDFA+V I + I L Sbjct: 225 IVVRTADIFNAPIKSEGAYEISLRSRGTPRIANRLLKRVRDFAQVEGKDAIDKNIVTIGL 284 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +L +D G D+ D + L + + GGPVG+ TI+A + E + +E ++EPY++Q GF+ Sbjct: 285 DKLRVDNRGLDETDHKLLETMIEYYKGGPVGLNTIAANIGEESETLEAMVEPYLLQIGFL 344 Query: 311 QRTPRGRLLMPIAWQHLG 328 QRTPRGR++ + HLG Sbjct: 345 QRTPRGRVVTEAGYTHLG 362 >gi|108562813|ref|YP_627129.1| Holliday junction DNA helicase RuvB [Helicobacter pylori HPAG1] gi|122980533|sp|Q1CUB7|RUVB_HELPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|107836586|gb|ABF84455.1| Holliday junction DNA helicase [Helicobacter pylori HPAG1] Length = 336 Score = 326 bits (835), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|308184190|ref|YP_003928323.1| Holliday junction DNA helicase RuvB [Helicobacter pylori SJM180] gi|308060110|gb|ADO02006.1| Holliday junction DNA helicase RuvB [Helicobacter pylori SJM180] Length = 336 Score = 326 bits (835), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKVAVKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|116617728|ref|YP_818099.1| Holliday junction DNA helicase B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272071|sp|Q03YJ6|RUVB_LEUMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116096575|gb|ABJ61726.1| Holliday junction DNA helicase subunit RuvB [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 351 Score = 326 bits (835), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 162/318 (50%), Positives = 216/318 (67%), Gaps = 1/318 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N ++ +++SL RP+ L E+ GQ L V+I AAK R EALDHVL GPPGLGKTTL Sbjct: 28 NDEEQRSELSL-RPQFLREYIGQEALKEELNVYISAAKQREEALDHVLLFGPPGLGKTTL 86 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+ VN ++TSGP I K GDL ALL LE D+LFIDEIHR+ +EEI+Y AME Sbjct: 87 AMIIANEMNVNIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRIPTNIEEIMYSAME 146 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+ +D+MVG+GP+AR V L FTLI ATTR G+L+ PL+DRFGI L +Y E+L+ Sbjct: 147 DYFVDIMVGQGPTARPVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINSLQYYTPEELQQ 206 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R A + + E A EI++RSRGTPRIA RLL+RVRDFA+V I + I L Sbjct: 207 IVVRTADIFNAPIKSEGAYEISLRSRGTPRIANRLLKRVRDFAQVEGKDAIDKNIVTIGL 266 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +L +D G D+ D + L + + GGPVG+ TI+A + E + +E ++EPY++Q GF+ Sbjct: 267 DKLRVDNRGLDETDHKLLETMIEYYKGGPVGLNTIAANIGEESETLEAMVEPYLLQIGFL 326 Query: 311 QRTPRGRLLMPIAWQHLG 328 QRTPRGR++ + HLG Sbjct: 327 QRTPRGRVVTEAGYTHLG 344 >gi|254779078|ref|YP_003057183.1| Holliday junction DNA helicase RuvB [Helicobacter pylori B38] gi|254000989|emb|CAX28933.1| Holliday junction ATP-dependent DNA helicase [Helicobacter pylori B38] Length = 336 Score = 326 bits (835), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|19552870|ref|NP_600872.1| Holliday junction DNA helicase RuvB [Corynebacterium glutamicum ATCC 13032] gi|145295780|ref|YP_001138601.1| Holliday junction DNA helicase RuvB [Corynebacterium glutamicum R] gi|172044439|sp|A4QEN3|RUVB_CORGB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|140845700|dbj|BAF54699.1| hypothetical protein [Corynebacterium glutamicum R] Length = 363 Score = 326 bits (835), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 160/320 (50%), Positives = 225/320 (70%), Gaps = 1/320 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 + DA+++L RP++L EF GQ + L + + AK R DHVL GPPGLGKTT+A + Sbjct: 39 EYDAEVTL-RPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLGKTTMAMI 97 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF+ Sbjct: 98 IAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFR 157 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D++VG+GP A S+ + + FTL+ ATTR G+LT PL+DRFG ++ FY++ DL +V+ Sbjct: 158 IDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVPDLTKVVK 217 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R AK+ + + ++AA EIA RSRGTPRIA RLLRRVRDFAEV IT A+AAL+ Sbjct: 218 RTAKILDVGIDNDAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITMGAANAALIVF 277 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D++G D+LD L + R GGGPVG+ T++ + E +E++ EPY+++ G I RT Sbjct: 278 DVDEVGLDRLDRAVLDALIRGHGGGPVGVNTLAVAVGEEPGTVEEVCEPYLVRAGMIART 337 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 RGR+ AW+HLG++ P Sbjct: 338 GRGRVATAAAWRHLGLEPPE 357 >gi|261839236|gb|ACX99001.1| Holliday junction DNA helicase B [Helicobacter pylori 52] Length = 336 Score = 326 bits (835), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 226/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+ + A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIITKAAAKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|62390541|ref|YP_225943.1| Holliday junction DNA helicase RuvB [Corynebacterium glutamicum ATCC 13032] gi|41325879|emb|CAF20042.1| Holliday junction resolvasome helicase subunit [Corynebacterium glutamicum ATCC 13032] Length = 363 Score = 326 bits (835), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 160/320 (50%), Positives = 225/320 (70%), Gaps = 1/320 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 + DA+++L RP++L EF GQ + L + + AK R DHVL GPPGLGKTT+A + Sbjct: 39 EYDAEVTL-RPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLGKTTMAMI 97 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF+ Sbjct: 98 IAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFR 157 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D++VG+GP A S+ + + FTL+ ATTR G+LT PL+DRFG ++ FY++ DL +V+ Sbjct: 158 IDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVPDLTKVVK 217 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R AK+ + + ++AA EIA RSRGTPRIA RLLRRVRDFAEV IT A+AAL+ Sbjct: 218 RTAKILDVGIDNDAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITMGAANAALVVF 277 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D++G D+LD L + R GGGPVG+ T++ + E +E++ EPY+++ G I RT Sbjct: 278 DVDEVGLDRLDRAVLDALIRGHGGGPVGVNTLAVAVGEEPGTVEEVCEPYLVRAGMIART 337 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 RGR+ AW+HLG++ P Sbjct: 338 GRGRVATAAAWRHLGLEPPE 357 >gi|317009034|gb|ADU79614.1| Holliday junction DNA helicase RuvB [Helicobacter pylori India7] Length = 336 Score = 326 bits (835), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 228/311 (73%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E++ GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLHQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + +I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLDITLHALKELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|284050868|ref|ZP_06381078.1| Holliday junction DNA helicase RuvB [Arthrospira platensis str. Paraca] gi|291567135|dbj|BAI89407.1| Holliday junction DNA helicase RuvB [Arthrospira platensis NIES-39] Length = 369 Score = 326 bits (835), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 164/313 (52%), Positives = 218/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ + L++ I AAK+R E LDH+L GPPGLGKTT+A ++A E+GV Sbjct: 51 IRPQQLADYIGQRDLKQVLEIAIAAAKSRQEPLDHLLLYGPPGLGKTTMALILATEMGVK 110 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P + K D+A LL N + ++LFIDEIHRLS + EEILYPAMED +LD+ +G+G Sbjct: 111 CQITTAPSLEKPRDIAGLLVNQKPGEILFIDEIHRLSKMAEEILYPAMEDSRLDITIGQG 170 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SAR+ I L++FT++ ATTR+G LT+PL+DRFG+ RL FYE+++L IV R AKL Sbjct: 171 RSARTRSIPLNKFTIVGATTRIGALTSPLRDRFGLIQRLRFYEVDELAQIVNRTAKLLTT 230 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T E A EIA RSRGTPRIA RLLRRVRD+ EV + IT EIA AL +D +G D Sbjct: 231 PITPEGALEIARRSRGTPRIANRLLRRVRDYLEVKASGAITGEIAAIALELFNVDPLGLD 290 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D L +I NF GGPVG+ET++A E +E++ EPY++Q GF+QRT RGR+ P Sbjct: 291 WTDQHLLRIIIENFQGGPVGLETLAAASGEDAQTLEEVQEPYLMQIGFLQRTHRGRIATP 350 Query: 322 IAWQHLGIDIPHR 334 AWQHLG P + Sbjct: 351 KAWQHLGYQPPEK 363 >gi|217033319|ref|ZP_03438750.1| hypothetical protein HP9810_9g72 [Helicobacter pylori 98-10] gi|216944260|gb|EEC23685.1| hypothetical protein HP9810_9g72 [Helicobacter pylori 98-10] gi|261837821|gb|ACX97587.1| Holliday junction DNA helicase [Helicobacter pylori 51] gi|317179218|dbj|BAJ57006.1| Holliday junction DNA helicase B [Helicobacter pylori F30] gi|332673235|gb|AEE70052.1| crossover junction ATP-dependent DNA helicase RuvB [Helicobacter pylori 83] Length = 336 Score = 326 bits (835), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E++ GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|317180716|dbj|BAJ58502.1| Holliday junction DNA helicase B [Helicobacter pylori F32] Length = 336 Score = 325 bits (834), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E++ GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPSLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|207108173|ref|ZP_03242335.1| Holliday junction DNA helicase B [Helicobacter pylori HPKX_438_CA4C1] Length = 320 Score = 325 bits (834), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 11 LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 71 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 131 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQ 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD Sbjct: 191 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 250 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 251 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 309 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 310 --KTHALLKIP 318 >gi|108799234|ref|YP_639431.1| Holliday junction DNA helicase RuvB [Mycobacterium sp. MCS] gi|119868350|ref|YP_938302.1| Holliday junction DNA helicase B [Mycobacterium sp. KMS] gi|126434892|ref|YP_001070583.1| Holliday junction DNA helicase RuvB [Mycobacterium sp. JLS] gi|123369346|sp|Q1B9Q9|RUVB_MYCSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|171769149|sp|A1UFA4|RUVB_MYCSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|171855233|sp|A3PYW5|RUVB_MYCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|108769653|gb|ABG08375.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium sp. MCS] gi|119694439|gb|ABL91512.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium sp. KMS] gi|126234692|gb|ABN98092.1| Holliday junction DNA helicase RuvB [Mycobacterium sp. JLS] Length = 357 Score = 325 bits (834), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 165/330 (50%), Positives = 227/330 (68%), Gaps = 1/330 (0%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 DR+ + V + D D SL RPR+L EF GQ L++ +E AK R DH+L GP Sbjct: 16 DRDVSPALTVGEGDIDASL-RPRSLGEFIGQPRVREQLQLVLEGAKNRGGTPDHILLSGP 74 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKT+LA ++A EL + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ E Sbjct: 75 PGLGKTSLAMIIAAELSSSLRVTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPAE 134 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++F Sbjct: 135 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 194 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE +L+ ++ R A + G+ + EA EIA RSRGTPRIA RLLRRVRD+AEV IT Sbjct: 195 YEPAELERVLARSAGILGIHLGTEAGAEIARRSRGTPRIANRLLRRVRDYAEVRADGVIT 254 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 R+IA AAL +D++G D+LD L+ + R+FGGGPVG+ T++ + E +E++ EP Sbjct: 255 RDIAKAALEVYDVDELGLDRLDRAVLSALIRSFGGGPVGVSTLAVAVGEEPTTVEEVCEP 314 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++ G I RTPRGR+ AW HLG+ P Sbjct: 315 FLVRAGMIARTPRGRVATASAWTHLGLTPP 344 >gi|22257045|sp|Q9AE09|RUVB_CORGL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|21324429|dbj|BAB99053.1| Holliday junction resolvasome helicase subunit [Corynebacterium glutamicum ATCC 13032] Length = 360 Score = 325 bits (834), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 160/320 (50%), Positives = 225/320 (70%), Gaps = 1/320 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 + DA+++L RP++L EF GQ + L + + AK R DHVL GPPGLGKTT+A + Sbjct: 36 EYDAEVTL-RPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLGKTTMAMI 94 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF+ Sbjct: 95 IAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFR 154 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D++VG+GP A S+ + + FTL+ ATTR G+LT PL+DRFG ++ FY++ DL +V+ Sbjct: 155 IDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVPDLTKVVK 214 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R AK+ + + ++AA EIA RSRGTPRIA RLLRRVRDFAEV IT A+AAL+ Sbjct: 215 RTAKILDVGIDNDAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITMGAANAALIVF 274 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D++G D+LD L + R GGGPVG+ T++ + E +E++ EPY+++ G I RT Sbjct: 275 DVDEVGLDRLDRAVLDALIRGHGGGPVGVNTLAVAVGEEPGTVEEVCEPYLVRAGMIART 334 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 RGR+ AW+HLG++ P Sbjct: 335 GRGRVATAAAWRHLGLEPPE 354 >gi|21674448|ref|NP_662513.1| Holliday junction DNA helicase B [Chlorobium tepidum TLS] gi|25453272|sp|Q8KC00|RUVB_CHLTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|21647634|gb|AAM72855.1| Holliday junction DNA helicase RuvB [Chlorobium tepidum TLS] Length = 344 Score = 325 bits (834), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 161/311 (51%), Positives = 224/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ + +F GQ + NLKVFI AA+ R EALDHVL GPPGLGKTTLA ++A E+G + Sbjct: 21 IRPQKMGDFAGQKKLIDNLKVFITAARKRGEALDHVLLSGPPGLGKTTLAHIIAAEMGGS 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP+I KAG+LA LLT+++ D+LFIDEIHRL+ VEE LY AMED+++D+++ G Sbjct: 81 IKITSGPLIDKAGNLAGLLTSMKKGDILFIDEIHRLAPAVEEYLYSAMEDYRIDILLDSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P++R+V++ L FTL+ ATTR GLLT+PL+ RFGI RL++Y E L++I+ R A + + Sbjct: 141 PASRAVQLKLEPFTLVGATTRAGLLTSPLRARFGINSRLDYYNPELLQSIIIRAAGILNI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA EIA RSRGTPRIA RLLRR RDFA+VA +I+ +A L L ID+ G D Sbjct: 201 GIDEDAAMEIARRSRGTPRIANRLLRRARDFAQVAGDASISLAVARRTLESLEIDEGGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L I R F GGPVG+ +++ + E +D IE++ EPY+IQ G++ RTPRGR+ Sbjct: 261 DMDKKILEAIVRKFNGGPVGLASLAVSVGEEQDTIEEVYEPYLIQMGYLSRTPRGRVATR 320 Query: 322 IA---WQHLGI 329 +A + H GI Sbjct: 321 LAMSRFAHPGI 331 >gi|154174013|ref|YP_001408691.1| Holliday junction DNA helicase RuvB [Campylobacter curvus 525.92] gi|166231476|sp|A7GZP9|RUVB_CAMC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|112802406|gb|EAT99750.1| holliday junction DNA helicase RuvB [Campylobacter curvus 525.92] Length = 338 Score = 325 bits (834), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 161/330 (48%), Positives = 231/330 (70%), Gaps = 2/330 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MDR + + + + ++SL RP + +++ GQ + NL VFI+AAK R E LDHVLF G Sbjct: 1 MDRIVEIEKVSFESEFEVSL-RPSSFDDYIGQEKIKQNLDVFIKAAKKRGECLDHVLFYG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+ V+ + T+ P+I K+GDLAA+LTNL++ DVLFIDEIHRLS + Sbjct: 60 PPGLGKTTLAHIIANEMAVSIKMTAAPMIEKSGDLAAILTNLQEGDVLFIDEIHRLSPAI 119 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+++ PL+DRFG+ RL Sbjct: 120 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMISAPLRDRFGMDFRLQ 179 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY +L I+Q + G AA EIA R+R TPRIA RLL+R+RDFAEV I Sbjct: 180 FYSTAELSRIIQIASVKLGKECDKAAALEIAKRARATPRIALRLLKRIRDFAEVNDEAMI 239 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 + E A L L ++ +GFD++D++YL ++ + P+G+ TI+A LSE +ED+IE Sbjct: 240 SHERAKEGLNALGVNSLGFDEMDIKYLEILL-DAKRRPLGLSTIAAALSEDEGTVEDVIE 298 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331 PY++ GFI+RT +GR+ ++ I + Sbjct: 299 PYLLANGFIERTAKGRIASEKCFETFKIKL 328 >gi|281355534|ref|ZP_06242028.1| Holliday junction DNA helicase RuvB [Victivallis vadensis ATCC BAA-548] gi|281318414|gb|EFB02434.1| Holliday junction DNA helicase RuvB [Victivallis vadensis ATCC BAA-548] Length = 341 Score = 325 bits (833), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 164/326 (50%), Positives = 227/326 (69%), Gaps = 1/326 (0%) Query: 5 EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++ ++++D A + LRP +F GQ L++F+ AAKAR EALDH+L GPP Sbjct: 3 ERFITSTLNKKDPARETSLRPPKFADFPGQDRVKEQLELFVHAAKAREEALDHILLCGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++A E G N +S+SGP I K GDLA LLT LE DVLFIDEIHRL+ VEE Sbjct: 63 GLGKTTLAYIIANERGTNLKSSSGPAIEKPGDLAGLLTALEPGDVLFIDEIHRLNSTVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 LY AMEDF +D+M+ +G ARSV++ + FTLI ATTR G+++ PL+ RFG+ IRL++Y Sbjct: 123 YLYSAMEDFFIDIMIEQGAGARSVRLTVPHFTLIGATTRQGMISAPLRSRFGLNIRLDYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 + E L I++R A + + + D+ A +IA R RGTPRIA LLRR RD+A+V IT Sbjct: 183 DAESLSRILKRSAGILDIDIDDDGARQIAGRCRGTPRIANNLLRRARDYAQVRADSVITG 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 ++A+ AL L ID G D++D+R L I +FGGGPVG++ I+ + E D+IED+ EP+ Sbjct: 243 KVAEEALEMLQIDHDGLDEMDIRILETIIASFGGGPVGLKNIAVSIGEEEDSIEDVYEPF 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329 +IQ+G++ RTP+GR+ P AW +G+ Sbjct: 303 LIQKGYLVRTPKGRVATPKAWDKVGM 328 >gi|86606501|ref|YP_475264.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-3-3Ab] gi|97189888|sp|Q2JTJ1|RUVB2_SYNJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB 2 gi|86555043|gb|ABD00001.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-3-3Ab] Length = 370 Score = 325 bits (833), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 175/324 (54%), Positives = 219/324 (67%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 EGLL +A LRPRTL E+ GQ E L + I AA+AR E LDH+LF GPPG Sbjct: 36 EGLLQPQAHPSEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARGEPLDHLLFYGPPG 95 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTT+A V+A E+G F T+ P + D+A L L+ DVLFIDEIHRL + EE+ Sbjct: 96 LGKTTVAAVLAAEMGSRFYMTTAPALESPRDIAGYLVRLKQGDVLFIDEIHRLPKVTEEL 155 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LYPAMEDF+LD+ VG+G SAR I L RFTLI ATTR+G LT+PL+DRFG RL FYE Sbjct: 156 LYPAMEDFRLDITVGKGRSARITSIPLERFTLIGATTRIGALTSPLRDRFGQVQRLRFYE 215 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +L IV R A+L ++ A EIA RSRGTPRIA RLL+RVRD+A+V I+RE Sbjct: 216 PHELAEIVLRSARLLNTSIDRAGAEEIARRSRGTPRIANRLLKRVRDYAQVRGDGHISRE 275 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A AAL +D MG D D + LT++ FGGGPVG+ET++A E IE++ EPY+ Sbjct: 276 VAAAALELFQVDPMGLDWTDRKLLTVLVEQFGGGPVGLETMAAVTGEDPQTIEEVYEPYL 335 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLG 328 +Q G++QRTPRGR++ P A QHLG Sbjct: 336 LQIGYLQRTPRGRVVTPAALQHLG 359 >gi|305681162|ref|ZP_07403969.1| Holliday junction DNA helicase RuvB [Corynebacterium matruchotii ATCC 14266] gi|305659367|gb|EFM48867.1| Holliday junction DNA helicase RuvB [Corynebacterium matruchotii ATCC 14266] Length = 365 Score = 325 bits (833), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 160/330 (48%), Positives = 223/330 (67%), Gaps = 1/330 (0%) Query: 4 REGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 R G ++ + + DI + LRPR+L EF GQ + L + + AK R DHVL GP Sbjct: 30 RRGTINPHALNTETDIETTLRPRSLAEFIGQPKVRDQLNLVLTGAKNRNVTPDHVLLSGP 89 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTT+A ++A E+G + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++ E Sbjct: 90 PGLGKTTMAMIIAYEMGTSLRMTSGPALERTGDLAAMLSNLMEGDVLFIDEIHRMARPAE 149 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG ++ F Sbjct: 150 EMLYMAMEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAQMEF 209 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y+ DL +V R AK+ G+ + +AA EIA RSRGTPRIA RLLRRVRD+A+V I Sbjct: 210 YDTPDLTQVVSRAAKIIGVGIDPDAAVEIASRSRGTPRIANRLLRRVRDYADVHGTGHID 269 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 + AAL+ +D MG D+LD LT + + GGGPVG+ T++ + E +E++ EP Sbjct: 270 LQAVRAALIVFDVDAMGLDRLDRAVLTALIKGHGGGPVGVSTLAIAVGEEASTVEEVCEP 329 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Y+++ G I RT RGR+ AW+HLG++ P Sbjct: 330 YLVRAGMITRTGRGRVATAAAWRHLGLEPP 359 >gi|225021303|ref|ZP_03710495.1| hypothetical protein CORMATOL_01322 [Corynebacterium matruchotii ATCC 33806] gi|224946036|gb|EEG27245.1| hypothetical protein CORMATOL_01322 [Corynebacterium matruchotii ATCC 33806] Length = 365 Score = 325 bits (833), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 160/330 (48%), Positives = 223/330 (67%), Gaps = 1/330 (0%) Query: 4 REGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 R G ++ + + DI + LRPR+L EF GQ + L + + AK R DHVL GP Sbjct: 30 RRGTINPHALNTETDIETTLRPRSLAEFIGQPKVRDQLNLVLTGAKNRNVTPDHVLLSGP 89 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTT+A ++A E+G + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++ E Sbjct: 90 PGLGKTTMAMIIAYEMGTSLRMTSGPALERTGDLAAMLSNLMEGDVLFIDEIHRMARPAE 149 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG ++ F Sbjct: 150 EMLYMAMEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAQMEF 209 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y+ DL +V R AK+ G+ + +AA EIA RSRGTPRIA RLLRRVRD+A+V I Sbjct: 210 YDTPDLTQVVSRAAKIIGVGIDPDAAVEIASRSRGTPRIANRLLRRVRDYADVHGTGHID 269 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 + AAL+ +D MG D+LD LT + + GGGPVG+ T++ + E +E++ EP Sbjct: 270 LQAVRAALIVFDVDAMGLDRLDRAVLTALIKGHGGGPVGVSTLAIAVGEEASTVEEVCEP 329 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 Y+++ G I RT RGR+ AW+HLG++ P Sbjct: 330 YLVRAGMITRTGRGRVATAAAWRHLGLEPP 359 >gi|86740077|ref|YP_480477.1| Holliday junction DNA helicase RuvB [Frankia sp. CcI3] gi|123751318|sp|Q2JD94|RUVB_FRASC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|86566939|gb|ABD10748.1| Holliday junction DNA helicase subunit RuvB [Frankia sp. CcI3] Length = 348 Score = 325 bits (833), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 166/330 (50%), Positives = 229/330 (69%), Gaps = 1/330 (0%) Query: 2 MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M +GL+S S E+ A + LRPRTL EF GQ + L + +E A+AR DHVL Sbjct: 1 MSDDGLVSAAASPEERAFEAGLRPRTLAEFVGQRKVREQLTIMLEGARARGRPPDHVLLS 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT+LA ++A+EL V R TSGP I +AGDL A+LT L +VLF+DEIHR++ Sbjct: 61 GPPGLGKTSLAMIMAQELEVPLRMTSGPAIERAGDLVAILTALSPGEVLFLDEIHRIARP 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D+++G+GP A ++ +++S FTL+ ATTR GLLT PL+DRFG L Sbjct: 121 AEELLYAAMEDFRVDVILGKGPGATAIPLDVSPFTLVGATTRSGLLTGPLRDRFGFTAHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FY+ ++L ++ R A L G+ +T E A E+A RSRGTPRIA RLLRRVRD+AEV Sbjct: 181 DFYDADELARVLTRSAGLLGVTLTAEGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGV 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +TREIA AAL +D +G D+LD L + FGGGPVG+ T++ + E + +ED+ Sbjct: 241 VTREIAQAALRIYDVDGLGLDRLDRAVLEALVTRFGGGPVGLTTLAVSVGEEPETVEDVA 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EP++++ G + RT RGR+ P A++HLG+D Sbjct: 301 EPFLLRAGLLIRTARGRMATPAAFEHLGLD 330 >gi|269926044|ref|YP_003322667.1| Holliday junction DNA helicase RuvB [Thermobaculum terrenum ATCC BAA-798] gi|269789704|gb|ACZ41845.1| Holliday junction DNA helicase RuvB [Thermobaculum terrenum ATCC BAA-798] Length = 354 Score = 325 bits (832), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 165/320 (51%), Positives = 223/320 (69%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ++D + +RP+ L+E+ GQ + +KV IEAAKAR EA+DH+L GPPGLGKTTLA + Sbjct: 13 EDDIQEATVRPKRLDEYIGQDQIKDRVKVIIEAAKARGEAIDHILLYGPPGLGKTTLATI 72 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+GV STSGP I + GD+A++L+ L+ +VLFIDEIHRL VEE+LY AMEDF+ Sbjct: 73 IANEMGVKIHSTSGPAIERPGDVASILSKLQPFEVLFIDEIHRLPRPVEEMLYSAMEDFK 132 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D + G+GP+A +V + L FTLI ATTR+ LL++PL+ RFG RL + +I+ + IV+ Sbjct: 133 VDFVYGKGPNAGTVTLPLPPFTLIGATTRLALLSSPLRGRFGDIFRLEYQDIDSMAAIVK 192 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + + +TDE A EIA RSRGTPR+A RLLRRVRD+A+V I E A AL Sbjct: 193 RAANILKVGITDEGALEIARRSRGTPRVAIRLLRRVRDYAQVRADHLIDHETACKALDIQ 252 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D++G D++D R L I F GGPVG+ET++A +SE D I D+ EPY++ GFIQRT Sbjct: 253 GVDELGLDEVDRRILLAIIEKFDGGPVGLETLAASISEEPDTIMDVYEPYLLILGFIQRT 312 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 PRGR+ A+ HL I P Sbjct: 313 PRGRVATRRAYDHLSIPYPE 332 >gi|213966114|ref|ZP_03394301.1| holliday junction DNA helicase RuvB [Corynebacterium amycolatum SK46] gi|213951212|gb|EEB62607.1| holliday junction DNA helicase RuvB [Corynebacterium amycolatum SK46] Length = 370 Score = 325 bits (832), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 160/323 (49%), Positives = 224/323 (69%), Gaps = 1/323 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 V + DA+ S LRP++L EF GQ + L + + A+ R DH+L GPPGLGKTT+ Sbjct: 44 QVEEVDAE-SNLRPKSLGEFIGQPKVREQLDLVLSGARGRNVTPDHILLSGPPGLGKTTM 102 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A+E+G + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ VEE+LY AME Sbjct: 103 AMIIAQEMGSSLRMTSGPALIRAGDLAAMLSNLLEGDVLFIDEIHRIARPVEEMLYMAME 162 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF++D++VG+GP A S+ + + FTL+ ATTR G+LT PL+DRFG ++ FYE+EDL Sbjct: 163 DFRIDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYEVEDLTK 222 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 +V R A + G+ ++ EAA EIA RSRGTPRIA RLLRRVRDFA+V I A AAL Sbjct: 223 VVTRAAGILGVDISPEAAVEIASRSRGTPRIANRLLRRVRDFADVHSGGVIDLGAAKAAL 282 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 + +D++G D+LD LT + + GGGPVG+ +++ + E +E++ EPY+++ G I Sbjct: 283 IVFDVDELGLDRLDRAVLTALVKGHGGGPVGVNSLALAVGEEPSTVEEVCEPYLVRAGMI 342 Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333 RT RGR+ AW+HLG+ P Sbjct: 343 ARTSRGRVATARAWRHLGLQPPE 365 >gi|25028329|ref|NP_738383.1| Holliday junction DNA helicase B [Corynebacterium efficiens YS-314] gi|44888502|sp|Q8FPK5|RUVB_COREF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|23493614|dbj|BAC18583.1| holliday junction DNA-helicase RuvB [Corynebacterium efficiens YS-314] Length = 360 Score = 325 bits (832), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 160/324 (49%), Positives = 225/324 (69%), Gaps = 1/324 (0%) Query: 11 NVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N+ +D + + LRPR+L+EF GQ + L + + AK R DHVL GPPGLGKTT Sbjct: 31 NIQPDDVEAEVTLRPRSLDEFIGQPKVRDQLSLVLTGAKKRGVVPDHVLLSGPPGLGKTT 90 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 +A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AM Sbjct: 91 MAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAM 150 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 EDF++D++VG+GP A S+ + + FTL+ ATTR G+LT PL+DRFG ++ FY++ DL Sbjct: 151 EDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVADLT 210 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 +V+R A++ + + +AA EIA RSRGTPRIA RLLRRVRDFAEV IT A+AA Sbjct: 211 RVVKRTARILEVGIDADAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITLGAANAA 270 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L+ +D++G D+LD L + R GGGPVG+ T++ + E +E++ EPY+++ G Sbjct: 271 LIVFDVDELGLDRLDRAVLDALVRGHGGGPVGVNTLAVAVGEEPATVEEVCEPYLVRAGM 330 Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333 I RT RGR+ AW+HLG++ P Sbjct: 331 IARTGRGRVATAAAWRHLGLEPPE 354 >gi|259507384|ref|ZP_05750284.1| Holliday junction DNA helicase RuvB [Corynebacterium efficiens YS-314] gi|259165009|gb|EEW49563.1| Holliday junction DNA helicase RuvB [Corynebacterium efficiens YS-314] Length = 363 Score = 325 bits (832), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 160/324 (49%), Positives = 225/324 (69%), Gaps = 1/324 (0%) Query: 11 NVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N+ +D + + LRPR+L+EF GQ + L + + AK R DHVL GPPGLGKTT Sbjct: 34 NIQPDDVEAEVTLRPRSLDEFIGQPKVRDQLSLVLTGAKKRGVVPDHVLLSGPPGLGKTT 93 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 +A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AM Sbjct: 94 MAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAM 153 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 EDF++D++VG+GP A S+ + + FTL+ ATTR G+LT PL+DRFG ++ FY++ DL Sbjct: 154 EDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVADLT 213 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 +V+R A++ + + +AA EIA RSRGTPRIA RLLRRVRDFAEV IT A+AA Sbjct: 214 RVVKRTARILEVGIDADAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITLGAANAA 273 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L+ +D++G D+LD L + R GGGPVG+ T++ + E +E++ EPY+++ G Sbjct: 274 LIVFDVDELGLDRLDRAVLDALVRGHGGGPVGVNTLAVAVGEEPATVEEVCEPYLVRAGM 333 Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333 I RT RGR+ AW+HLG++ P Sbjct: 334 IARTGRGRVATAAAWRHLGLEPPE 357 >gi|317012227|gb|ADU82835.1| Holliday junction DNA helicase RuvB [Helicobacter pylori Lithuania75] Length = 336 Score = 324 bits (831), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQ 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E+A EIA RSRGTPRIA RLL+RV DFA V ++ + I AL L ++++GFD Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVCDFALVKNSSLMDLNITLHALNELGVNELGFD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 261 EVDLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319 Query: 322 IAWQHLGIDIP 332 H + IP Sbjct: 320 --KTHALLKIP 328 >gi|162447236|ref|YP_001620368.1| Holliday junction DNA helicase RuvB [Acholeplasma laidlawii PG-8A] gi|189045779|sp|A9NF62|RUVB_ACHLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|161985343|gb|ABX80992.1| holliday junction DNA helicase RuvB [Acholeplasma laidlawii PG-8A] Length = 337 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 161/328 (49%), Positives = 229/328 (69%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M E + R+++ ++ D +LRP+TL ++ GQ + L ++I+AA R E+LDHVL G Sbjct: 1 MSEEKSVLRDLNLKNDDELMLRPQTLNQYIGQDDIKEMLSIYIQAALKREESLDHVLLYG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PGLGKTTLAQ++A ELGV+ + TSGP I K GDL ALL++L DVLFIDEIHR+ V Sbjct: 61 APGLGKTTLAQIIANELGVDIKITSGPAIEKTGDLVALLSSLSPGDVLFIDEIHRIPRFV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMED+ LD+++ + +RS++I L FTLI ATTR G L++PL++RFG RL+ Sbjct: 121 EEVLYSAMEDYTLDIVLDKERDSRSIRIELPPFTLIGATTRFGDLSHPLRERFGAVFRLS 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +Y++E++K IV+R +K+ + ++A E++ RSRGTPRIA RL RRVRDFAE+ I Sbjct: 181 YYKLEEIKQIVRRTSKVYQNEIDEKAVDELSKRSRGTPRIANRLFRRVRDFAEIMTDAVI 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T +I AL +L ID G D D YL I F GGPVG+E++++ + E IED+ E Sbjct: 241 TLDITQLALTKLGIDHKGLDASDYLYLRGIVERFNGGPVGLESLASTIGEEPGTIEDVYE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 PY++Q+G+I+RTPRGR+ +A+ LG+ Sbjct: 301 PYLLQEGYIKRTPRGRVATELAYNLLGV 328 >gi|24987361|pdb|1IXR|C Chain C, Ruva-Ruvb Complex Length = 312 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 172/307 (56%), Positives = 224/307 (72%), Gaps = 1/307 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+E+ GQ L+V++EAAKAR E L+H+L GPPGLGKTTLA V+A ELGVN Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS EE LYPAMEDF +D+++G+ Sbjct: 66 LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 125 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR++++ L RFTLI ATTR GL+T PL RFGI L +Y E+L V R A+L G Sbjct: 126 GPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG 185 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + +T+EAA EI RSRGT R+A RL RRVRDFA+VA + ITRE A AL L +D++G Sbjct: 186 VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGL 245 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 ++ D L ++ FGGGPVG+ T++ LSE +E++ EPY+I+QG ++RTPRGR+ Sbjct: 246 EKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVAT 305 Query: 321 PIAWQHL 327 +A +HL Sbjct: 306 ELARRHL 312 >gi|297622864|ref|YP_003704298.1| Holliday junction DNA helicase RuvB [Truepera radiovictrix DSM 17093] gi|297164044|gb|ADI13755.1| Holliday junction DNA helicase RuvB [Truepera radiovictrix DSM 17093] Length = 343 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 164/308 (53%), Positives = 217/308 (70%), Gaps = 1/308 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L ++ GQ + L V++EAAK+R EALDHVL GPPGLGKTTLA +VA ELGVN Sbjct: 7 LRPRALADYVGQTKLKEKLAVYLEAAKSRGEALDHVLLYGPPGLGKTTLAHIVAYELGVN 66 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R TSGP I K GDLAA+LTN L++ DVLFIDEIHRL + EE LYPAMEDF++D+++G+ Sbjct: 67 IRVTSGPAIEKPGDLAAILTNSLDEGDVLFIDEIHRLGRVAEEHLYPAMEDFKVDIILGQ 126 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR+++++L RFTLI ATTR GL+T P++ RFGI L +Y +L V R A+L G Sbjct: 127 GPAARTIRLDLPRFTLIGATTRSGLITGPMRSRFGIIEHLEYYTAAELAAGVTRDAQLLG 186 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + +AA EI R+RGT RIA RLLRRVRDFAEVA + ++ A +AL L ID++G Sbjct: 187 FRIDHDAALEIGRRARGTMRIAKRLLRRVRDFAEVAGEQQVSLARAQSALNDLGIDELGL 246 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 + D L + F GGP G+ T++ + E + +E++ EP++IQ G + RTPRGR+ Sbjct: 247 EARDRVILETLITKFAGGPTGLNTLATAVGEDGNTLEEVYEPFLIQNGLLSRTPRGRVAT 306 Query: 321 PIAWQHLG 328 A+ HLG Sbjct: 307 ERAYAHLG 314 >gi|13346824|gb|AAK19840.1|AF331924_5 Holliday junction DNA-helicase RuvB [Corynebacterium glutamicum] Length = 363 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 160/320 (50%), Positives = 224/320 (70%), Gaps = 1/320 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 + DA+++L RP++L EF GQ + L + + AK R DHVL GPPGLGKTT+A + Sbjct: 39 EYDAEVTL-RPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLGKTTMAMI 97 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF+ Sbjct: 98 IAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFR 157 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D++VG+GP A S+ + + FTL+ ATTR G+LT PL+DRFG ++ FY++ DL +V+ Sbjct: 158 IDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVPDLTKVVK 217 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R AK+ + + ++AA EIA RSRGTPRIA RLLRRVRDFAEV IT A+AAL Sbjct: 218 RTAKILDVGIDNDAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITMGAANAALDVF 277 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D++G D+LD L + R GGGPVG+ T++ + E +E++ EPY+++ G I RT Sbjct: 278 DVDEVGLDRLDRAVLDALIRGHGGGPVGVNTLAVAVGEEPGTVEEVCEPYLVRAGMIART 337 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 RGR+ AW+HLG++ P Sbjct: 338 GRGRVATAAAWRHLGLEPPE 357 >gi|298490930|ref|YP_003721107.1| Holliday junction DNA helicase RuvB ['Nostoc azollae' 0708] gi|298232848|gb|ADI63984.1| Holliday junction DNA helicase RuvB ['Nostoc azollae' 0708] Length = 371 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 164/330 (49%), Positives = 221/330 (66%), Gaps = 7/330 (2%) Query: 11 NVSQEDADIS-------LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 N+ Q DA I+ +RP+ ++ GQ + L + IEAAK+R E +DH+L GPP Sbjct: 36 NILQPDAAINEEGRQEESIRPQRFADYIGQKDLKDVLDIAIEAAKSRGEIIDHLLLYGPP 95 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTT+A ++A E+GVN + TS P + + D+ LL NL+ DVLF+DEIHRLS + EE Sbjct: 96 GLGKTTMAMILASEMGVNCKITSAPALERPRDIVGLLVNLKPGDVLFVDEIHRLSRMTEE 155 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 ILYPAMED++LD+ VG+G SAR I LS+FTL+ ATTRVG LT+PL++RFG+ +L FY Sbjct: 156 ILYPAMEDYRLDITVGKGSSARIRSIPLSKFTLVGATTRVGALTSPLRERFGLIQKLRFY 215 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E+++L IV R A+L V A EIA RSRGTPRIA RLL+RVRD+AEV I Sbjct: 216 EVDELSRIVIRTAELLKTTVNCSGATEIAKRSRGTPRIANRLLKRVRDYAEVKSRTEINE 275 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +A AL +D G D D + L++I NF GGPVG+ET++A E IE++ EPY Sbjct: 276 TVAAEALQLFQVDPCGLDWTDRKMLSVIIENFNGGPVGLETLAAATGEDTQTIEEVYEPY 335 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++Q G++ RTPRGR+ A+QH+G P+ Sbjct: 336 LMQIGYLSRTPRGRVATKAAYQHMGFKPPN 365 >gi|209527513|ref|ZP_03276016.1| Holliday junction DNA helicase RuvB [Arthrospira maxima CS-328] gi|209492062|gb|EDZ92414.1| Holliday junction DNA helicase RuvB [Arthrospira maxima CS-328] Length = 369 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 164/313 (52%), Positives = 218/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ + L++ I AAK+R E LDH+L GPPGLGKTT+A ++A E+GV Sbjct: 51 IRPQQLADYIGQRDLKQVLEIAIAAAKSRREPLDHLLLYGPPGLGKTTMALILATEMGVK 110 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P + K D+A LL N + ++LFIDEIHRLS + EEILYPAMED +LD+ +G+G Sbjct: 111 CQITTAPSLEKPRDIAGLLVNQKPGEILFIDEIHRLSKMAEEILYPAMEDSRLDITIGQG 170 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SAR+ I L++FT++ ATTR+G LT+PL+DRFG+ RL FYE+++L IV R AKL Sbjct: 171 RSARTRSIPLNKFTIVGATTRIGALTSPLRDRFGLIQRLRFYEVDELAQIVNRTAKLLKT 230 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T E A EIA RSRGTPRIA RLLRRVRD+ EV + IT EIA AL +D +G D Sbjct: 231 PITPEGALEIARRSRGTPRIANRLLRRVRDYLEVKASGDITGEIAAIALELFNVDPLGLD 290 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D L +I NF GGPVG+ET++A E +E++ EPY++Q GFIQRT RGR+ Sbjct: 291 WTDQHLLRIIIENFNGGPVGLETLAAASGEDAQTLEEVQEPYLMQIGFIQRTHRGRIATA 350 Query: 322 IAWQHLGIDIPHR 334 AWQHLG + P + Sbjct: 351 KAWQHLGYEPPQK 363 >gi|315187236|gb|EFU20993.1| Holliday junction DNA helicase subunit RuvB [Spirochaeta thermophila DSM 6578] Length = 342 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 165/316 (52%), Positives = 209/316 (66%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +EDA LRP +L EF G+ E NLKVFI AA+ R EALDHV GPPGLGKTTL + Sbjct: 11 EEDAQEERLRPLSLSEFQGKEEIKENLKVFIRAARQRGEALDHVFLSGPPGLGKTTLGSI 70 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGV R TS P + K DLA +LT L R VLFIDEIHRL +EE+LY AMED+ Sbjct: 71 IAHELGVELRITSAPALEKPKDLAGILTTLSPRSVLFIDEIHRLKPAIEEMLYVAMEDYV 130 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D ++G+GPSAR+V+I + FTL+ ATT+ G L PL RFGI N YE ED+ +++ Sbjct: 131 IDWIIGQGPSARTVRIPVPPFTLVGATTKAGKLATPLVSRFGITFHFNLYEKEDIIKVLR 190 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A++ GL+V + A ++ SRGTPRIA R+LRR RDFAEV IT +I + RL Sbjct: 191 RSARILGLSVEEPAFDLLSSCSRGTPRIANRMLRRARDFAEVYGKGVITPQIVRLTMDRL 250 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 ID+ G + D R L I F GGPVG E+++ L E D +ED EPY+IQ GF+QRT Sbjct: 251 GIDEAGLEAHDRRILDTIITKFDGGPVGAESLAIALGESVDTLEDFYEPYLIQCGFLQRT 310 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR++ P + HL I Sbjct: 311 PRGRIVTPRGYDHLNI 326 >gi|311742331|ref|ZP_07716140.1| crossover junction ATP-dependent DNA helicase RuvB [Aeromicrobium marinum DSM 15272] gi|311313959|gb|EFQ83867.1| crossover junction ATP-dependent DNA helicase RuvB [Aeromicrobium marinum DSM 15272] Length = 351 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 165/332 (49%), Positives = 223/332 (67%), Gaps = 1/332 (0%) Query: 2 MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 D G+++ ED A + LRPRTL E GQ L + ++AA AR DHVL Sbjct: 6 FDESGVVTAVAGAEDRAFEAALRPRTLTELIGQDRVREQLSLVLDAAIARGSTPDHVLLS 65 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A ++ R TSGP I AGDLAA+L+ + + DVLFIDEIHR+S Sbjct: 66 GPPGLGKTTLAMIIAHQVAAPLRITSGPAIQHAGDLAAILSGIGEGDVLFIDEIHRMSRP 125 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D++VG+GP A ++ + + FT++ ATTR GLL PL+DRFG +L Sbjct: 126 AEELLYMAMEDFRVDVVVGKGPGATAIPLEIPPFTVVGATTRAGLLPGPLRDRFGFTAQL 185 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FY+ DL IV+R A L L ++D A EIA RSRGTPRIA RLLRRVRDFAEV Sbjct: 186 DFYDAADLHRIVRRSADLLALDLSDAAGHEIASRSRGTPRIANRLLRRVRDFAEVRTGGV 245 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + A AAL +D +G D+LD LT + +FGGGPVG+ T++ + E R+ +E++ Sbjct: 246 LDEAAARAALDLYEVDAIGLDRLDRAVLTALCSSFGGGPVGLSTLAVAVGEERETVEEVA 305 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EP++++ GF+ RTPRGR+ P AW+HLG+ +P Sbjct: 306 EPFLVRLGFLARTPRGRVATPAAWRHLGMAVP 337 >gi|289641360|ref|ZP_06473525.1| Holliday junction DNA helicase RuvB [Frankia symbiont of Datisca glomerata] gi|289508822|gb|EFD29756.1| Holliday junction DNA helicase RuvB [Frankia symbiont of Datisca glomerata] Length = 350 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 163/330 (49%), Positives = 226/330 (68%), Gaps = 1/330 (0%) Query: 2 MDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD EGL+S QE A + LRP TL EF GQ + L + +E A+ARA DHVL Sbjct: 1 MDVEGLVSPVAEPQERAFEAGLRPGTLAEFIGQQKVREQLMIMLEGARARARPPDHVLLS 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT+LA ++ARE+ V R TSGP + +AGDL A+LT L +VLF+DEIHR++ Sbjct: 61 GPPGLGKTSLAMIIAREMAVPLRMTSGPAVERAGDLVAILTALAPGEVLFLDEIHRIARP 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D+++G+GP A ++ + ++ FTL+ ATTR GLLT PL+DRFG + Sbjct: 121 AEELLYAAMEDFRVDVVLGKGPGATAIPLEIAPFTLVGATTRSGLLTGPLRDRFGFTAHM 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FY+ +L ++ R A L G+ +T + A E+A RSRGTPRIA RLLRRVRD+AEV Sbjct: 181 DFYDTNELIDVLVRSAALLGVHITGDGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGV 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T E+A AAL +D +G D+LD L + R F GGPVG+ T++ + E D +E++ Sbjct: 241 VTHEVAQAALRVYDVDALGLDRLDRAVLEALVRRFNGGPVGLATLAVAVGEEPDTVEEVA 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EP++++ G + RTPRGR+ P A+ HLG+D Sbjct: 301 EPFLVRAGLLARTPRGRIATPAAFTHLGLD 330 >gi|256375825|ref|YP_003099485.1| Holliday junction DNA helicase RuvB [Actinosynnema mirum DSM 43827] gi|255920128|gb|ACU35639.1| Holliday junction DNA helicase RuvB [Actinosynnema mirum DSM 43827] Length = 368 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 160/313 (51%), Positives = 220/313 (70%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 + LRP+ L EF GQ + L++ + A R DHVL GPPGLGKT+LA ++A ELG Sbjct: 47 TTLRPKDLREFVGQPKVREQLELVLHGAMRRGAPPDHVLLSGPPGLGKTSLAMIIAAELG 106 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF++D++VG Sbjct: 107 ASLRITSGPALERAGDLAAMLSNLVEGDVLFIDEIHRMARPAEEMLYLAMEDFRVDVVVG 166 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GP A S+ ++++ FTL+ ATTR G LT PL+DRFG + FY E+L IV+R A + Sbjct: 167 KGPGATSIPLDIAPFTLVGATTRSGALTGPLRDRFGFTGHMEFYTPEELDLIVRRSAVIL 226 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 G+ + +E A EIA RSRGTPRIA RLLRRVRDFAEV +T E+A AAL +D++G Sbjct: 227 GVDLREEGAVEIAGRSRGTPRIANRLLRRVRDFAEVRADGAVTLEVARAALAVYDVDELG 286 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D+LD L + R+FGGGPVG+ T++ + E +E++ EPY+++ G + RTPRGR+ Sbjct: 287 LDRLDRAVLGALVRSFGGGPVGVSTLAVAVGEEPTTVEEVCEPYLVRAGMLARTPRGRVA 346 Query: 320 MPIAWQHLGIDIP 332 +AWQHLG++ P Sbjct: 347 TALAWQHLGLEPP 359 >gi|261885273|ref|ZP_06009312.1| Holliday junction DNA helicase RuvB [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 318 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 157/298 (52%), Positives = 223/298 (74%), Gaps = 3/298 (1%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP T EE+ GQ + SNLKVFI+AAK R E+LDHVLF GPPGLGKTTLA ++A E+G N Sbjct: 20 LRPLTFEEYIGQEKIKSNLKVFIKAAKKRLESLDHVLFYGPPGLGKTTLAHIIANEMGAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + +S P+I K+GDLAA+LTNLE+ DVLFIDEIHRLS +EE+LY AMEDF+LD+++G G Sbjct: 80 IKISSAPMIEKSGDLAAILTNLEEGDVLFIDEIHRLSPAIEEVLYSAMEDFRLDIIIGSG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI++ +FTLI ATTR G+++ PL+DRFG+ RL FY +L I+ A G Sbjct: 140 PAAQTIKIDIPKFTLIGATTRAGMISAPLRDRFGMQFRLQFYTDNELARIISIAASKLGK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 T EA+ EIA RSRGTPRIA RLL+R+RDFAEV+ +I+++ A ++L L ++ +GFD Sbjct: 200 NSTKEASLEIAKRSRGTPRIALRLLKRIRDFAEVSDENSISKDRAKSSLDSLGVNDLGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP-RGRL 318 ++DL+YL ++ + +G+ TI+A LSE ++++I+PY++ F ++ P +GR+ Sbjct: 260 EMDLKYLDILVGS--KRALGLSTIAAALSEDEGTVKEVIDPYLLLNRFYRKEPEKGRI 315 >gi|2498879|sp|Q56214|RUVB_THETH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|7144503|gb|AAB03726.2| RuvB Protein [Thermus thermophilus] Length = 324 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 171/312 (54%), Positives = 224/312 (71%), Gaps = 1/312 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+E+ GQ L+V++EAAKAR E L+H+L GPPGLGKTTLA V+A ELGVN Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65 Query: 82 FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS EE LYPAMEDF +D+++G+ Sbjct: 66 LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 125 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP+AR++++ L RF LI ATTR GL+T PL RFGI L +Y E+L V R A+L G Sbjct: 126 GPAARTIRLELPRFALIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG 185 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + +T+EAA EI RSRGT R+A RL RRVRDFA+V + ITRE A AL L +D++G Sbjct: 186 VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVEGEEVITRERALEALAALGLDELGL 245 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 ++ D L ++ FG GPVG+ T++ LSE +E++ EPY+I+QG ++RTPRGR+ Sbjct: 246 EKRDREILEVLILRFGAGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVAT 305 Query: 321 PIAWQHLGIDIP 332 +A++HLG P Sbjct: 306 ELAYRHLGYPPP 317 >gi|166368034|ref|YP_001660307.1| Holliday junction DNA helicase RuvB [Microcystis aeruginosa NIES-843] gi|189046037|sp|B0JY77|RUVB_MICAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166090407|dbj|BAG05115.1| holliday junction DNA helicase [Microcystis aeruginosa NIES-843] Length = 358 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 159/327 (48%), Positives = 230/327 (70%), Gaps = 2/327 (0%) Query: 5 EGLLSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 E LL+ N + E+ + + +RP++LE++ GQ + +NLKV I AAKAR EA+DH+LF GP Sbjct: 15 ENLLTPNPTIEETEKAAAEIRPQSLEDYIGQQDLKANLKVTIAAAKARQEAIDHLLFYGP 74 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTT+A ++A E+GVN R T+ P + + D+ +L NL+ RD+LFIDEIHRL+ + E Sbjct: 75 PGLGKTTMALILAAEMGVNCRITAAPALERPRDITGILINLQPRDILFIDEIHRLNRVTE 134 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LYPAMED++LD+ +G+G +A+ I+L FTLI ATT+VG LT+PL+DRFG+ RL F Sbjct: 135 ELLYPAMEDYRLDVTIGKGQAAKIRSISLPPFTLIGATTKVGSLTSPLRDRFGLIQRLRF 194 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y +E+L I+ R A + + +T+ A EIA RSRGTPRIA RLL+RVRD+ +V I+ Sbjct: 195 YAVEELTAIILRSATIFNIPITEAGAIEIARRSRGTPRIANRLLKRVRDYVQVKGETIIS 254 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 ++A L +L +D MG D D L + + F G PVG+E ++A E IE++ EP Sbjct: 255 PQLAAEGLNQLNVDSMGLDWTDRLVLKTMIQQFQGKPVGLEAVAAATGEDAKTIEEVYEP 314 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329 Y++Q G++ RTPRGR++ A++HLG+ Sbjct: 315 YLLQIGYLNRTPRGRVVTSAAYEHLGL 341 >gi|113475089|ref|YP_721150.1| Holliday junction DNA helicase RuvB [Trichodesmium erythraeum IMS101] gi|123161082|sp|Q115Z7|RUVB_TRIEI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|110166137|gb|ABG50677.1| Holliday junction DNA helicase subunit RuvB [Trichodesmium erythraeum IMS101] Length = 386 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 214/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E+ GQ + L + I AAK+R E+LDH+L GPPGLGKTT++ ++A E+ VN Sbjct: 68 IRPQRLDEYIGQKDLKEVLNIAISAAKSRKESLDHLLLYGPPGLGKTTMSLILAAEMEVN 127 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P I K D+ LL L+ D+LFIDEIHRLS + EEILYPAMEDF+LD+ VG+G Sbjct: 128 CKITTAPAIEKPRDIVGLLVGLQKGDILFIDEIHRLSKMTEEILYPAMEDFRLDITVGQG 187 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 S+++ I L FTL+ ATT+VG LT+PL+DRFGI RL FYE+++L I+ R AK+ Sbjct: 188 KSSKTRSIPLKPFTLVGATTKVGSLTSPLRDRFGIIQRLRFYEVDELSLIIIRAAKVLNT 247 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T++ A E+A RSRGTPRIA RLLRRVRD++EV I EIA AL +D +G D Sbjct: 248 DITEDGAEEVARRSRGTPRIANRLLRRVRDYSEVKKLTPINAEIAGEALELFNVDPLGLD 307 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D L + N+ GGP G+ET++A E IE++ EPY++Q GF+QRTPRGR++ Sbjct: 308 WTDRNLLRTMIENYNGGPAGLETMAAATGEDAQTIEEVYEPYLMQIGFMQRTPRGRVVTA 367 Query: 322 IAWQHLGIDIP 332 W+HLG P Sbjct: 368 AGWRHLGFSPP 378 >gi|311772314|pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable Holliday Junction Dna Helicase (Ruvb) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 In Complex With Adenosine-5'-Diphosphate gi|311772315|pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable Holliday Junction Dna Helicase (Ruvb) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 In Complex With Adenosine-5'-Diphosphate Length = 338 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 156/309 (50%), Positives = 217/309 (70%), Gaps = 1/309 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + + GQ NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E N Sbjct: 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEXSAN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++T+ P I K+GDLAA+LTNL + D+LFIDEIHRLS +EE+LYPA ED++LD+++G G Sbjct: 83 IKTTAAPXIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAXEDYRLDIIIGSG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L +FTLI ATTR G L+NPL+DRFG RL FY+ +L I+Q+ A Sbjct: 143 PAAQTIKIDLPKFTLIGATTRAGXLSNPLRDRFGXQFRLEFYKDSELALILQKAALKLNK 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++AA EIA RSR TPRIA RLL+RVRDFA+V + IT + A+ AL L ++++GFD Sbjct: 203 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 DLRYL ++ P+G+ +I+A LSE + IED+IEPY++ G+I+RT +GR+ Sbjct: 263 AXDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASA 321 Query: 322 IAWQHLGID 330 ++ L ++ Sbjct: 322 KSYSALKLN 330 >gi|325001438|ref|ZP_08122550.1| Holliday junction DNA helicase RuvB [Pseudonocardia sp. P1] Length = 360 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 159/318 (50%), Positives = 225/318 (70%), Gaps = 1/318 (0%) Query: 16 DADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 +AD+ + LRPR+L+EF GQ L++ +E A+ R + DH+L GPPGLGKT+LA +V Sbjct: 30 EADVEASLRPRSLDEFVGQPRVREQLELVLEGARRRGDPPDHILLSGPPGLGKTSLAMIV 89 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A+ELG + R TSGP + +AGDLAA+L+NL DVLFIDEIHR + EE+LY AMEDF++ Sbjct: 90 AQELGASIRLTSGPALERAGDLAAMLSNLVPGDVLFIDEIHRTARPAEEMLYLAMEDFRV 149 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG + FYE+ +L+ ++ R Sbjct: 150 DVVVGKGPGATSIPLDVAPFTLVGATTRAGSLTGPLRDRFGFTGHMEFYEVLELEHVLHR 209 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + + A EIA R RGTPR+A RLLRRVRDFAEV I RE+A AAL Sbjct: 210 AAGILGIDLRADGAEEIAGRCRGTPRVANRLLRRVRDFAEVRADGVIHREVARAALAVYD 269 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D++G D+LD L+ + R+F GGPVG+ T++ + E +E++ EPY+++ G + RTP Sbjct: 270 VDELGLDRLDRAVLSALVRSFHGGPVGVSTLAVAVGEDAGTVEEVCEPYLVRAGMLARTP 329 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ P+AW HLG+ P Sbjct: 330 RGRVATPLAWTHLGLTPP 347 >gi|257457429|ref|ZP_05622599.1| holliday junction DNA helicase RuvB [Treponema vincentii ATCC 35580] gi|257445158|gb|EEV20231.1| holliday junction DNA helicase RuvB [Treponema vincentii ATCC 35580] Length = 350 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 213/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L +F GQ NL VFI+AA++R E+LDH+ +GPPGLGKTTLAQ+ A+ELGV Sbjct: 27 LRPQLLRDFQGQQNIKENLSVFIQAARSRGESLDHLFLIGPPGLGKTTLAQITAQELGVE 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T P + K DLA +LT L +R V FIDEIHRL +EE+LY AMED++LD ++G+G Sbjct: 87 CKITGAPALDKPKDLAGILTTLSERSVFFIDEIHRLKPAIEEMLYIAMEDYELDWIIGQG 146 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P AR+V+I L FTLI ATTR G++++PL RFGI R FY E+L +I+ R A + + Sbjct: 147 PGARTVRIPLPPFTLIGATTRAGMVSSPLISRFGIVQRFEFYSDEELASIIMRSADILKI 206 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA +A SRGTPR+A RLLRR+RDFA + + T+ L RL ID++G + Sbjct: 207 NIEKKAAIALARCSRGTPRVANRLLRRMRDFAFIEGSDTVREVTVAQGLERLHIDRLGLE 266 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D + L I N+GGGPVG ET++ + E +D +ED EPY+IQ G +QRTPRGR++ Sbjct: 267 NYDRQILRSIIENYGGGPVGAETLAISIGESQDTLEDYYEPYLIQTGLLQRTPRGRMVTE 326 Query: 322 IAWQHLGIDIP 332 A+ HLG+ IP Sbjct: 327 KAYAHLGLKIP 337 >gi|152990121|ref|YP_001355843.1| Holliday junction DNA helicase RuvB [Nitratiruptor sp. SB155-2] gi|166231506|sp|A6Q1X7|RUVB_NITSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|151421982|dbj|BAF69486.1| holliday junction DNA helicase RuvB [Nitratiruptor sp. SB155-2] Length = 335 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 166/306 (54%), Positives = 227/306 (74%), Gaps = 1/306 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S+E + + LRP +E+ GQ + +NLKVFI+A K R E LDHVLF GPPGLGKTTL+ Sbjct: 11 SEESSFETTLRPSDWDEYIGQEKIKNNLKVFIQACKKRGETLDHVLFFGPPGLGKTTLSL 70 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A ++ N + T+ P+I K+GDLAA+LTNLE+ D+LFIDEIHRLS +EEILYPAMEDF Sbjct: 71 IIASQMEANIKITAAPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAIEEILYPAMEDF 130 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+++G GP+A+++KI+L +FTLI ATTR G+L++PL+DRFG+ RL FY ++L I+ Sbjct: 131 RLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSSPLRDRFGMHFRLQFYTPQELAQII 190 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 A + EAA EIA RSRGTPRIA RLL+RVRDF++VA KTIT + AL Sbjct: 191 TNAANKLSKDIDAEAALEIAKRSRGTPRIALRLLKRVRDFSDVADEKTITLKRTQKALEA 250 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D+ GFD+LDL+ L ++A G P+G+ TI+A LSE IED+IEP+++ G+++R Sbjct: 251 LGVDERGFDELDLKLLKLLADA-KGKPLGLSTIAAALSEDEGTIEDVIEPFLLANGYLER 309 Query: 313 TPRGRL 318 T RGR+ Sbjct: 310 TARGRM 315 >gi|288923989|ref|ZP_06418059.1| Holliday junction DNA helicase RuvB [Frankia sp. EUN1f] gi|288344667|gb|EFC79126.1| Holliday junction DNA helicase RuvB [Frankia sp. EUN1f] Length = 355 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 162/329 (49%), Positives = 228/329 (69%), Gaps = 1/329 (0%) Query: 3 DREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 D GL+S + +E A + LRPRTL EF GQ + L + +E A+ R DHVL G Sbjct: 4 DDGGLVSAAATPEEKAFEAGLRPRTLSEFVGQRKVREQLSIMLEGAQGRGRPPDHVLLSG 63 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKT+LA ++A ELGV R TSGP I +AGDL A+LT L +VLF+DEIHR++ Sbjct: 64 PPGLGKTSLAMIIAEELGVPLRMTSGPAIERAGDLVAILTALTPGEVLFLDEIHRIARPA 123 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF++D+++G+GP A ++ ++L+ FTL+ ATTR GLLT PL+DRFG ++ Sbjct: 124 EELLYAAMEDFRVDVVLGKGPGATAIPLDLAPFTLVGATTRSGLLTGPLRDRFGFTAHMD 183 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY ++L ++ R A+L G+ +TD+ A E+A RSRGTPRIA RLLRRVRD+AEV + Sbjct: 184 FYGADELALVLARSARLLGVRLTDDGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGVV 243 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 +RE+A AAL +D +G D+LD L + R FGGGPVG+ T++ + E + +ED+ E Sbjct: 244 SREVAQAALRIYDVDGLGLDRLDRAVLDALVRRFGGGPVGLGTLAVSVGEEAETVEDVSE 303 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 P++++ G + RT RGR+ P A+ HLG++ Sbjct: 304 PFLLRAGLLVRTARGRVATPAAFTHLGLE 332 >gi|169629966|ref|YP_001703615.1| Holliday junction DNA helicase RuvB [Mycobacterium abscessus ATCC 19977] gi|169241933|emb|CAM62961.1| Holliday junction DNA helicase RuvB [Mycobacterium abscessus] Length = 358 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 157/322 (48%), Positives = 223/322 (69%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 V + D D L RP++L EF GQ L++ + AK R DH+L GPPGLGKT+L Sbjct: 27 TVGENDVDAGL-RPKSLREFIGQPRVREQLELVLSGAKNRGGTPDHILLSGPPGLGKTSL 85 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AME Sbjct: 86 AMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAEEMLYLAME 145 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++FYE ++L+ Sbjct: 146 DFRVDIVVGKGPGATSIPLEVAPFTLVGATTRSGSLTGPLRDRFGFTAHMDFYEPDELEL 205 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 ++ R A + G+ + +A EIA RSRGTPRIA RLLRRVRD+AEV IT ++A +AL Sbjct: 206 VLARSAGILGIELGADAGTEIARRSRGTPRIANRLLRRVRDYAEVRADGVITVDVAKSAL 265 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +D++G D+LD L + R+FGGGPVG+ T++ + E +E++ EP++++ G + Sbjct: 266 AVYDVDELGLDRLDRAVLLALTRSFGGGPVGLSTLAVAVGEESTTVEEVCEPFLVRAGML 325 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 RTPRGR+ P+AW HLG+ P Sbjct: 326 ARTPRGRVATPLAWTHLGLTPP 347 >gi|157363791|ref|YP_001470558.1| Holliday junction DNA helicase RuvB [Thermotoga lettingae TMO] gi|172045991|sp|A8F5R0|RUVB_THELT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157314395|gb|ABV33494.1| Holliday junction DNA helicase RuvB [Thermotoga lettingae TMO] Length = 343 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 154/313 (49%), Positives = 226/313 (72%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 DA + LRP TLE++ GQ E L + ++AAK R E LDH+LF GPPGLGKTTLA V+A Sbjct: 11 DAILVSLRPDTLEDYIGQEEVKKKLYIAMKAAKLRNEPLDHILFSGPPGLGKTTLAFVIA 70 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 +E+G N TSGPV+ + GD+AA+L+++E+ D+LFIDEIHR++ VEE+ Y A+ED+++D Sbjct: 71 KEMGKNIHITSGPVLERQGDIAAILSSIEEGDILFIDEIHRINKAVEEVFYSALEDYKVD 130 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +M+G+GP+ARS++I L FTL+ ATTR GLL++PL++RFG+ + L FY +++L I++R Sbjct: 131 IMIGKGPTARSIRIGLKPFTLVGATTRSGLLSSPLRNRFGMILELQFYTVKELMEIIKRA 190 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 K+ + + + AA IA R+RGTPRIA RLL+RVRD A + I + + + L I Sbjct: 191 CKIMNIEIEESAAQLIASRARGTPRIALRLLKRVRDVATIRKENKIISHLVEKTMDILEI 250 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 DK+G D++D + L + + GGPVGIE ++A L+ D ++++ EPY++QQG I RTPR Sbjct: 251 DKLGLDEMDRKILRTLIEIYDGGPVGIEALAATLNLEIDTLKEIHEPYLLQQGLIIRTPR 310 Query: 316 GRLLMPIAWQHLG 328 GR+ IA++HLG Sbjct: 311 GRVATGIAYEHLG 323 >gi|187735135|ref|YP_001877247.1| Holliday junction DNA helicase RuvB [Akkermansia muciniphila ATCC BAA-835] gi|238691873|sp|B2UPI9|RUVB_AKKM8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|187425187|gb|ACD04466.1| Holliday junction DNA helicase RuvB [Akkermansia muciniphila ATCC BAA-835] Length = 339 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 215/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP EF GQ + L + +EAA+ R + LDH+L GPPGLGKTTLA ++A +G Sbjct: 21 LRPPAFSEFCGQEKIKDRLMLMVEAARQRDDVLDHILLSGPPGLGKTTLANIIANAVGCR 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +TSGP I KAGDLA +LTNLE D+LFIDEIHRL +EE LYPAMEDF+LD+++ +G Sbjct: 81 IHTTSGPQIEKAGDLAGVLTNLEKGDILFIDEIHRLHPAIEEYLYPAMEDFRLDIIIDQG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+++NL +FTL+ ATTR G+LT+PL+ RFG+ RL++Y E+L I++R A L + Sbjct: 141 PNARSIQLNLPKFTLVGATTRAGMLTSPLRSRFGLVNRLDYYTREELCAIIERSAGLLNV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V E A +IA+RSRGTPR+A LLR VRD+A+V IT ++A AL + ID G D Sbjct: 201 PVDPEGALQIALRSRGTPRVANSLLRWVRDYAQVRGDGVITEQLAHDALTMIEIDDDGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L + F GGPVG+ +++ + E +ED+ EP++I QG+I RTPRGR+ MP Sbjct: 261 EMDKRLLEAMIYKFNGGPVGLSSLAVAVGEDASTLEDVHEPFLIMQGYISRTPRGRVAMP 320 Query: 322 IAWQHLGIDIP 332 A+ +G P Sbjct: 321 SAYLKMGAAPP 331 >gi|158316900|ref|YP_001509408.1| Holliday junction DNA helicase RuvB [Frankia sp. EAN1pec] gi|238686842|sp|A8KZE6|RUVB_FRASN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|158112305|gb|ABW14502.1| Holliday junction DNA helicase RuvB [Frankia sp. EAN1pec] Length = 353 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 161/330 (48%), Positives = 228/330 (69%), Gaps = 1/330 (0%) Query: 2 MDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M EGL+S + +E A + LRP+ L+EF GQ + L + +E A+ R DHVL Sbjct: 1 MSGEGLVSAAAAPEEQAFEAGLRPKNLDEFVGQRKVREQLSIMLEGARGRGRPPDHVLLS 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT+LA ++A ELGV R TSGP I +AGDL A+LT L +VLF+DEIHR++ Sbjct: 61 GPPGLGKTSLAMIIAEELGVPLRMTSGPAIERAGDLVAILTALTPGEVLFLDEIHRIARP 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D+++G+GP A ++ ++L+ FTL+ ATTR GLLT PL+DRFG + Sbjct: 121 AEELLYAAMEDFRVDVVLGKGPGATAIPLDLAPFTLVGATTRSGLLTGPLRDRFGFTAHM 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FY+ +L ++ R A+L G+ +T+ A E+A RSRGTPRIA RLLRRVRD+AEV Sbjct: 181 DFYDAAELALVLTRSARLLGVQLTEGGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGV 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 ++RE+A AAL +D +G D+LD L + R FGGGPVG+ T++ + E D +ED+ Sbjct: 241 VSREVARAALRIYDVDALGLDRLDRAVLDALVRRFGGGPVGLSTLAVAVGEEADTVEDVS 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EP++++ G + RT RGR+ P A+ HLG++ Sbjct: 301 EPFLLRAGLLIRTARGRVATPAAFTHLGLE 330 >gi|159037424|ref|YP_001536677.1| Holliday junction DNA helicase RuvB [Salinispora arenicola CNS-205] gi|189046044|sp|A8LXW9|RUVB_SALAI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157916259|gb|ABV97686.1| Holliday junction DNA helicase RuvB [Salinispora arenicola CNS-205] Length = 354 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 163/333 (48%), Positives = 228/333 (68%), Gaps = 1/333 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M + L+S VS + D+ + +RPR L EF Q L + ++ A R DH+L Sbjct: 1 MTGDNLVSAYVSDAERDVEASVRPRRLAEFIAQERVRDQLDLLLQGALRRGSPPDHILLS 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT+LA +VA ELG + R TSGP I ++GDLAA+LT+L + DVLFIDEIHR++ Sbjct: 61 GPPGLGKTSLANIVAAELGTSIRVTSGPAIERSGDLAAILTSLGEGDVLFIDEIHRIARP 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D++VG+GP A ++ +++ FTL+ ATTR GLLT P++DRFG L Sbjct: 121 AEELLYSAMEDFRVDVVVGKGPGATAIPLDVEPFTLVGATTRAGLLTGPMRDRFGFVAHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FY DL+T++ R A++ G+ +T + A EI+ RSRGTPRIA RLLRRVRDFAEV Sbjct: 181 DFYSPADLETLLHRSARILGVPITGDGAVEISGRSRGTPRIANRLLRRVRDFAEVRADGV 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +TRE A AALL +D +G D+LD + LT + F GGPVG+ T++ + E D +E++ Sbjct: 241 VTREAARAALLVYDVDALGLDRLDRQVLTALVDLFRGGPVGLSTLAVAVGEQPDTVEEVC 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EP++++ G + RTPRGR+ AW+HLG P+ Sbjct: 301 EPFLVRAGLLARTPRGRVATEAAWRHLGRTPPN 333 >gi|325672615|ref|ZP_08152311.1| crossover junction ATP-dependent DNA helicase RuvB [Rhodococcus equi ATCC 33707] gi|325556492|gb|EGD26158.1| crossover junction ATP-dependent DNA helicase RuvB [Rhodococcus equi ATCC 33707] Length = 377 Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 161/329 (48%), Positives = 224/329 (68%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++ N D ++ + LRP+ L +F GQ L++ + AK R DHVL GPP Sbjct: 19 ESAVTANFVSSDGEVEASLRPKNLSDFIGQPRVREQLQLVLTGAKLRGGTPDHVLLSGPP 78 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE Sbjct: 79 GLGKTSMAMIIATELGTSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRMARPAEE 138 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++FY Sbjct: 139 MLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFY 198 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E +L+ I+ R A + G+ + +EA EIA RSRGTPRIA RLLRRVRD+AEV ITR Sbjct: 199 EPHELQLILLRSAGILGIELGEEAGAEIAGRSRGTPRIANRLLRRVRDYAEVRADGIITR 258 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EIA AAL +D++G D+LD L + R+FGGGPVG+ T++ + E +E++ EP+ Sbjct: 259 EIAQAALAVYDVDQLGLDRLDRAVLGALVRSFGGGPVGVSTLAVAVGEEPSTVEEVCEPF 318 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +++ G I RTPRGR+ AW LG+ P Sbjct: 319 LVRAGMIARTPRGRVATAAAWAQLGLTPP 347 >gi|256371995|ref|YP_003109819.1| Holliday junction DNA helicase RuvB [Acidimicrobium ferrooxidans DSM 10331] gi|256008579|gb|ACU54146.1| Holliday junction DNA helicase RuvB [Acidimicrobium ferrooxidans DSM 10331] Length = 351 Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 162/311 (52%), Positives = 222/311 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L +F GQ E + L+V +EAA+ R E DH+LF GPPGLGKT+LA ++ARELG Sbjct: 32 LRPERLADFIGQRELKAQLEVLLEAARGRGETPDHLLFAGPPGLGKTSLAFIIARELGTG 91 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP + + GDLA+LL +L +VLFIDEIHRL VEE+LY AMEDF++DL++G+G Sbjct: 92 VRVTSGPALQRIGDLASLLADLHGGEVLFIDEIHRLPRAVEELLYGAMEDFRVDLVLGKG 151 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARSV++++ RFTL+ ATTRVGL++ PL+DRFG RL++Y ++L +V+R A+ + Sbjct: 152 PGARSVRLDVPRFTLVGATTRVGLISAPLRDRFGYHYRLDYYGDDELVAVVERAARTLSV 211 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EIA RSRGTPR+A RLLRRVRD+AEV I RE+A AL +D +G D Sbjct: 212 PIEPDAALEIARRSRGTPRLANRLLRRVRDYAEVRGDGAIDRELALEALDLFGVDVLGLD 271 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++DL L ++ F G PVG+ T++ + E +E++ EP++IQ+G I RTPRGR+ P Sbjct: 272 RVDLEILRVLCVQFPGRPVGLSTLAVAVRENAGTLEEVYEPFLIQRGLIVRTPRGRMPTP 331 Query: 322 IAWQHLGIDIP 332 A+ HLG+D P Sbjct: 332 RAYVHLGLDAP 342 >gi|296139645|ref|YP_003646888.1| Holliday junction DNA helicase RuvB [Tsukamurella paurometabola DSM 20162] gi|296027779|gb|ADG78549.1| Holliday junction DNA helicase RuvB [Tsukamurella paurometabola DSM 20162] Length = 364 Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 156/321 (48%), Positives = 225/321 (70%), Gaps = 2/321 (0%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 +S +D+D LRP++L+EF GQ + L++ + A+ R DH+L GPPGLGKT+LA Sbjct: 25 LSGDDSDS--LRPKSLDEFIGQPKVREQLQLVLHGARKRGGTPDHILLSGPPGLGKTSLA 82 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A ELG R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMED Sbjct: 83 MIIAAELGTALRVTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRMARPAEEMLYLAMED 142 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG ++FY+ DL + Sbjct: 143 FRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGSLTGPLRDRFGFTAHMDFYDTADLIQV 202 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R AK+ G+ + EAA EI RSRGTPRIA RLLRRVRDFA+V +T ++A AL Sbjct: 203 IERSAKILGIEIVREAAAEIGSRSRGTPRIANRLLRRVRDFADVRADGIVTVDVARGALK 262 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 +D++G D+LD L + R+FGGGPVG+ T++ + E +E++ EP++++ G + Sbjct: 263 VYDVDELGLDRLDRAVLGALIRSFGGGPVGVSTLAVAVGEEPGTVEEVCEPFLVRAGMLA 322 Query: 312 RTPRGRLLMPIAWQHLGIDIP 332 RTPRGR+ AW HLG++ P Sbjct: 323 RTPRGRVATMAAWHHLGLEPP 343 >gi|256852229|ref|ZP_05557615.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii 27-2-CHN] gi|260661739|ref|ZP_05862650.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii 115-3-CHN] gi|282932643|ref|ZP_06338057.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 208-1] gi|256615275|gb|EEU20466.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii 27-2-CHN] gi|260547486|gb|EEX23465.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii 115-3-CHN] gi|281303217|gb|EFA95405.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 208-1] Length = 337 Score = 322 bits (826), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 167/337 (49%), Positives = 226/337 (67%), Gaps = 8/337 (2%) Query: 1 MMDREGLLSRNVSQEDADISL-----LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD 55 MMD + SR V+ E+ L LRP++ ++ GQ S ++++I+AAK R EALD Sbjct: 1 MMDED---SRVVAGEEEQGDLQDELSLRPQSFSQYIGQKRVKSEMEIYIQAAKKRDEALD 57 Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115 HVL GPPGLGKTT+A V+A ELGVN ++TSGP I +AGDL ALL++L+ DVLFIDEIH Sbjct: 58 HVLLYGPPGLGKTTMAFVIANELGVNLKNTSGPAIERAGDLVALLSDLDPGDVLFIDEIH 117 Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175 RL+ +EEILY AMED+ +D++VGEG ++ +V + L FTLI ATTR G L+ PL+DRFG Sbjct: 118 RLAKPIEEILYSAMEDYYVDIVVGEGSTSHAVHVPLPPFTLIGATTRAGDLSAPLRDRFG 177 Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235 I + +Y I DL+ I+QR +++ + EAA E+A RSRGTPR+A RLL+RVRD+A+V Sbjct: 178 IVEHMQYYTIGDLEKIIQRSSEVFATKIGKEAAHELARRSRGTPRVANRLLKRVRDYAQV 237 Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295 I+ AL +L +D G D D + L I + GGPVGI T++A + E D Sbjct: 238 KEENKISLATTKYALDQLQVDNEGLDLTDRKILRTIIEAYHGGPVGIRTLAANIGEDTDT 297 Query: 296 IEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 IE + EPY++Q FI TPRGR+ A+ LGI +P Sbjct: 298 IEAVYEPYLLQHKFITMTPRGRVATQKAYLQLGIPLP 334 >gi|189346153|ref|YP_001942682.1| Holliday junction DNA helicase RuvB [Chlorobium limicola DSM 245] gi|238692201|sp|B3EH23|RUVB_CHLL2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189340300|gb|ACD89703.1| Holliday junction DNA helicase RuvB [Chlorobium limicola DSM 245] Length = 348 Score = 322 bits (826), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 161/297 (54%), Positives = 212/297 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + +F GQ NL+VFI AAK R +ALDHVL GPPGLGKTTLA ++A E+G + Sbjct: 21 IRPIRMLDFAGQQRLTDNLRVFISAAKMRGDALDHVLLSGPPGLGKTTLAHIIAAEMGSS 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP++ KAG+LA LLT L+ DVLFIDEIHR+ VEE LY AMEDF++D+M+ G Sbjct: 81 IKATSGPLLDKAGNLAGLLTGLQKGDVLFIDEIHRMPPAVEEYLYSAMEDFRIDIMLDSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR+V++ + FTL+ ATTR GLLT+PL+ RFGI R ++Y + L+ I+ R + + G+ Sbjct: 141 PSARAVQLRIEPFTLVGATTRSGLLTSPLRARFGINSRFDYYSADLLEKIIIRASGILGI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V +AA EIA RSRGTPRIA RLLRR RDFA+VA A ITR IA L L ID+ G D Sbjct: 201 GVDQDAAAEIAGRSRGTPRIANRLLRRARDFAQVADAPLITRSIAMTTLDCLEIDEEGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318 +D + + I F GGPVG +++ + E +D IE++ EPY+IQ G+I RTPRGR+ Sbjct: 261 DMDKKIMDTIVNKFSGGPVGAASLAVSVGEEQDTIEEVYEPYLIQAGYIARTPRGRV 317 >gi|312139495|ref|YP_004006831.1| holliday junction DNA helicase ruvb [Rhodococcus equi 103S] gi|311888834|emb|CBH48146.1| Holliday junction DNA helicase RuvB [Rhodococcus equi 103S] Length = 371 Score = 322 bits (826), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 161/329 (48%), Positives = 223/329 (67%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E ++ N D ++ + LRP+ L +F GQ L++ + AK R DHVL GPP Sbjct: 13 ESAVTANFVSSDGEVEASLRPKNLSDFIGQPRVREQLQLVLTGAKLRGGTPDHVLLSGPP 72 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE Sbjct: 73 GLGKTSMAMIIATELGTSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRMARPAEE 132 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++FY Sbjct: 133 MLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFY 192 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E +L+ I+ R A + G+ + +EA EIA RSRGTPRIA RLLRRVRD+AEV ITR Sbjct: 193 EPHELQLILLRSAGILGIELGEEAGAEIAGRSRGTPRIANRLLRRVRDYAEVRADGIITR 252 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EIA AAL +D +G D+LD L + R+FGGGPVG+ T++ + E +E++ EP+ Sbjct: 253 EIAQAALAVYDVDPLGLDRLDRAVLGALVRSFGGGPVGVSTLAVAVGEEPSTVEEVCEPF 312 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +++ G I RTPRGR+ AW LG+ P Sbjct: 313 LVRAGMIARTPRGRVATAAAWAQLGLTPP 341 >gi|294101861|ref|YP_003553719.1| Holliday junction DNA helicase RuvB [Aminobacterium colombiense DSM 12261] gi|293616841|gb|ADE56995.1| Holliday junction DNA helicase RuvB [Aminobacterium colombiense DSM 12261] Length = 352 Score = 322 bits (825), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 168/312 (53%), Positives = 223/312 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L++F GQ + L ++++AA+ R EALDH+LF GPPGLGKTTLA ++A E+G Sbjct: 22 LRPSSLQDFVGQQKLKDKLSIYVQAARQRKEALDHILFYGPPGLGKTTLAGIIAHEMGGQ 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R T+GP + KAGD+AA+L+NLE DVLFIDEIHRL VEEILYP+MEDF L ++VG+G Sbjct: 82 LRVTTGPALEKAGDIAAILSNLEPFDVLFIDEIHRLPANVEEILYPSMEDFSLHIIVGKG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + L FTL+ ATTR+GLLT+PL+ RFGI +L Y +++ IVQRGAK+ G+ Sbjct: 142 PLANNICLTLPPFTLVGATTRLGLLTSPLRARFGIVEQLALYNVDETSEIVQRGAKVLGI 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +EAA EIA RSRGTPR+A RLL+RVRD AEV + +I +A AL L +D +G D Sbjct: 202 EIEEEAAYEIARRSRGTPRVAIRLLKRVRDVAEVRQSPSINTAVASVALNMLGLDTLGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L +I F GGPVG+ TI+A L+E IED+ EPY+IQ+G I+RTPRGR Sbjct: 262 DGDRRILQVIVELFDGGPVGLSTIAAALNEEGQTIEDIYEPYLIQKGLIERTPRGRKATR 321 Query: 322 IAWQHLGIDIPH 333 + +LG + P Sbjct: 322 NGYLYLGKNPPE 333 >gi|307718816|ref|YP_003874348.1| holliday junction ATP-dependent DNA helicase RuvB [Spirochaeta thermophila DSM 6192] gi|306532541|gb|ADN02075.1| holliday junction ATP-dependent DNA helicase RuvB [Spirochaeta thermophila DSM 6192] Length = 342 Score = 322 bits (825), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 164/316 (51%), Positives = 208/316 (65%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +EDA LRP +L EF G+ E NL+VFI AA+ R EALDHV GPPGLGKTTL + Sbjct: 11 EEDAQEERLRPLSLSEFQGKEEIKENLRVFIHAARQRGEALDHVFLSGPPGLGKTTLGSI 70 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A ELGV R TS P + K DLA +LT L R VLFIDEIHRL +EE+LY AMED+ Sbjct: 71 IAHELGVELRITSAPALEKPKDLAGILTTLSPRSVLFIDEIHRLKPAIEEMLYVAMEDYV 130 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D ++G+GPSAR+V+I + FTL+ ATT+ G L PL RFGI N YE ED+ +++ Sbjct: 131 IDWIIGQGPSARTVRIPVPPFTLVGATTKAGKLATPLVSRFGITFHFNLYEKEDIIKVLR 190 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A++ GL V + A ++ SRGTPRIA R+LRR RDFAEV IT +I + RL Sbjct: 191 RSARILGLQVEEPAFDLLSSCSRGTPRIANRMLRRARDFAEVYGKGVITPQIVRLTMDRL 250 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 ID+ G + D R L I F GGPVG E+++ L E D +ED EPY+IQ GF+QRT Sbjct: 251 GIDEAGLEAHDRRILDTIITKFDGGPVGAESLAIALGESVDTLEDFYEPYLIQCGFLQRT 310 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR++ P + HL I Sbjct: 311 PRGRIVTPRGYDHLNI 326 >gi|172040616|ref|YP_001800330.1| Holliday junction DNA helicase RuvB [Corynebacterium urealyticum DSM 7109] gi|171851920|emb|CAQ04896.1| ruvB [Corynebacterium urealyticum DSM 7109] Length = 367 Score = 322 bits (825), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 155/314 (49%), Positives = 222/314 (70%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP++L EF GQ + L++ + A++R A DHVL GPPGLGKTT+A ++A+ELG Sbjct: 49 SSLRPKSLTEFIGQPKVRQQLELVLGGARSRGVAPDHVLLAGPPGLGKTTMAMIIAQELG 108 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF++D++VG Sbjct: 109 SSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMAMEDFRIDVIVG 168 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GP A S+ I ++ FTL+ ATTR G+LT PL+DRFG ++ FY+ +L +V R A + Sbjct: 169 KGPGATSIPIEIAPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDTPELTRVVTRAAGIL 228 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 G+ + +AA EIA RSRGTPRIA RLLRRVRD+A+V IT +IA AL+ +D++G Sbjct: 229 GVDIDSDAATEIASRSRGTPRIANRLLRRVRDYADVQADGRITVDIARQALVVFDVDEVG 288 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D+LD L + R GGGPVG+ T++ + E +E++ EP++++ G + RTPRGR+ Sbjct: 289 LDRLDNGVLEALVRGHGGGPVGVNTLALAVGEEPSTVEEVCEPFLVRAGMVARTPRGRVA 348 Query: 320 MPIAWQHLGIDIPH 333 AW+H+G++ P Sbjct: 349 TAAAWRHVGLEPPE 362 >gi|260583654|ref|ZP_05851402.1| holliday junction DNA helicase RuvB [Granulicatella elegans ATCC 700633] gi|260158280|gb|EEW93348.1| holliday junction DNA helicase RuvB [Granulicatella elegans ATCC 700633] Length = 332 Score = 322 bits (825), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 159/307 (51%), Positives = 216/307 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+++ GQ + L ++I+AA++R EALDHVL GPPGLGKTTLA V+A EL V Sbjct: 23 LRPQNLQQYIGQQKVKEELSIYIQAARSRQEALDHVLLYGPPGLGKTTLAMVIANELEVG 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I + GDL ALL +L DVLFIDEIHRL +VEE+LY AMEDF +D++VG+G Sbjct: 83 IKTTSGPAIERPGDLVALLNDLNAGDVLFIDEIHRLPRVVEEMLYSAMEDFFVDIVVGQG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A V L FTL+ ATTR G L+ PL+DRFGI + +Y+ + L IV+R A + Sbjct: 143 PTAHPVHFPLPPFTLVGATTRAGALSAPLRDRFGIVSHMEYYDEQSLTEIVKRTASVFES 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +EAA E+A+RSRGTPRIA RLL+RVRDF++V I++EI AL L +D+ G D Sbjct: 203 EIHEEAAREVALRSRGTPRIANRLLKRVRDFSQVYEEGGISKEITQKALKVLQVDEKGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L + + GGPVG+ I+A +SE + IED+ EPY++Q GFI+RT RGR++ P Sbjct: 263 AIDRKLLNAMIDLYDGGPVGLGAIAANISEDAETIEDMYEPYLLQIGFIKRTSRGRMVTP 322 Query: 322 IAWQHLG 328 A+ HL Sbjct: 323 EAYVHLN 329 >gi|225848850|ref|YP_002729014.1| holliday junction DNA helicase RuvB [Sulfurihydrogenibium azorense Az-Fu1] gi|225643095|gb|ACN98145.1| holliday junction DNA helicase RuvB [Sulfurihydrogenibium azorense Az-Fu1] Length = 324 Score = 322 bits (824), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 159/314 (50%), Positives = 225/314 (71%), Gaps = 5/314 (1%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L++F GQ E LKVFIEAAK + + LDHV+ GPPGLGKTTLA V+A E+G N Sbjct: 8 VRPKFLDDFIGQDEVKRQLKVFIEAAKLKNKPLDHVILSGPPGLGKTTLASVIANEMGSN 67 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS PV+ K GDL LLT+L+D D+LFIDEIHRLS +EEILY AMEDF++D+++G G Sbjct: 68 IKITSAPVLEKKGDLIGLLTSLKDNDILFIDEIHRLSPSLEEILYSAMEDFKVDVILGGG 127 Query: 142 PS-----ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196 A++++++L++FTLI ATTRVG+L++PL RFGI + L+FY+ + L I+ R A Sbjct: 128 SGRKGRSAKAIRLDLAKFTLIGATTRVGMLSSPLMSRFGIVLNLDFYDEDSLSKIILRTA 187 Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256 + + +T E A EIA S+GTPRIA +LL RV D+A + K I +E+A+ AL L+I Sbjct: 188 TINNIPITQEGALEIAKHSKGTPRIANKLLSRVYDYAVIHGNKVIDKEVANQALRFLSIQ 247 Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316 ++G D L L+YL + F GGPVG+ TIS +SE + IE++IEPY+++ GFI+RT +G Sbjct: 248 ELGIDSLSLKYLKTLVIQFNGGPVGLNTISFAISEDKRTIEEVIEPYLLKIGFIKRTAKG 307 Query: 317 RLLMPIAWQHLGID 330 R+ + A++ L +D Sbjct: 308 RVALKPAFEFLNLD 321 >gi|188996117|ref|YP_001930368.1| Holliday junction DNA helicase RuvB [Sulfurihydrogenibium sp. YO3AOP1] gi|188931184|gb|ACD65814.1| Holliday junction DNA helicase RuvB [Sulfurihydrogenibium sp. YO3AOP1] Length = 324 Score = 322 bits (824), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 220/311 (70%), Gaps = 5/311 (1%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L++F GQ E LKVFIEA K + + LDH + GPPGLGKTTLA ++A EL N Sbjct: 8 IRPLKLDDFIGQEEVKKQLKVFIEACKIQGKTLDHTILSGPPGLGKTTLATIIANELATN 67 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS PV+ K GDL LLT+L++ D+LFIDEIHRL+ +EEILY AMEDF++D++VG G Sbjct: 68 IKITSAPVLEKKGDLIGLLTSLKEGDILFIDEIHRLTPTLEEILYSAMEDFKVDVIVGGG 127 Query: 142 P-----SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196 SA+++++++++FTLI ATTR+G+L+ PL RFGI + L+FY+ + LK I+ R A Sbjct: 128 SNRKARSAKAIRLDINKFTLIGATTRIGMLSTPLISRFGIILNLDFYDQQSLKEIILRSA 187 Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256 K+ + +T+E A EIA S+GTPRIA +LL+RV D+A + I RE A AL L+I Sbjct: 188 KILNINITEEGALEIAKHSKGTPRIANKLLKRVYDYAVIHKKDVIDRETAFDALRFLSIG 247 Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316 K G D L L+YL + F GGPVG+ TIS +SE + IE++IEPY+++ GFI+RT +G Sbjct: 248 KDGIDGLSLKYLKSLVYQFNGGPVGLNTISFAISEDKRTIEEVIEPYLLKLGFIKRTAKG 307 Query: 317 RLLMPIAWQHL 327 R+ +P A ++L Sbjct: 308 RVALPTAVEYL 318 >gi|258653555|ref|YP_003202711.1| Holliday junction DNA helicase RuvB [Nakamurella multipartita DSM 44233] gi|258556780|gb|ACV79722.1| Holliday junction DNA helicase RuvB [Nakamurella multipartita DSM 44233] Length = 370 Score = 322 bits (824), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 157/326 (48%), Positives = 227/326 (69%), Gaps = 1/326 (0%) Query: 5 EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 EG+++ D+D+ + LRPR+++EF GQ + L++ + AK R DHVL GPP Sbjct: 23 EGVVTPGQVPGDSDVEASLRPRSMDEFVGQEKVREQLQLVLAGAKLRGTPPDHVLLAGPP 82 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKT+L+ ++A ELG R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE Sbjct: 83 GLGKTSLSMIIAAELGAALRLTSGPALERAGDLAAILSNLVEGDVLFIDEIHRIARPAEE 142 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LY AMEDF++D+MVG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG + FY Sbjct: 143 MLYLAMEDFRVDVMVGKGPGATSIPLDIAPFTLVGATTRSGQLTGPLRDRFGFTAHMEFY 202 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++L ++ R A + G+ + + A EIA RSRGTPRIA RLLRRVRD+A+V IT Sbjct: 203 SADELTIVISRSAAILGIELRPDGAAEIARRSRGTPRIANRLLRRVRDYAQVRADGAITL 262 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 ++A AAL +D+MG D+LD L+++ R+FGGGPVG+ T++ + E +E++ EP+ Sbjct: 263 DVARAALAVYDVDEMGLDRLDRAVLSVLCRSFGGGPVGLTTLAVAVGEEPSTVEEVCEPF 322 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329 +++ G + RT RGR+ P AW HLG+ Sbjct: 323 LVRIGMLARTARGRVATPAAWDHLGL 348 >gi|297205605|ref|ZP_06923001.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus jensenii JV-V16] gi|297150183|gb|EFH30480.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus jensenii JV-V16] Length = 336 Score = 322 bits (824), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 159/311 (51%), Positives = 215/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++ ++ GQ S ++++I+AAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 23 LRPQSFSQYIGQKRVKSEMEIYIQAAKKRDEALDHVLLYGPPGLGKTTMAFVIANELGVN 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I +AGDL ALL++L+ DVLFIDEIHRL+ +EEILY AMED+ +D++VGEG Sbjct: 83 LKNTSGPAIERAGDLVALLSDLDPGDVLFIDEIHRLAKPIEEILYSAMEDYYVDIVVGEG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++ +V + L FTLI ATTR G L+ PL+DRFGI + +Y I DL+ I+QR +++ Sbjct: 143 STSHAVHVPLPPFTLIGATTRAGDLSAPLRDRFGIVEHMQYYTIGDLEKIIQRSSEVFAT 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPR+A RLL+RVRD+A+V I+ AL +L +D G D Sbjct: 203 KIGKEAAHELARRSRGTPRVANRLLKRVRDYAQVKEENKISLATTKYALDQLQVDNEGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D + L I + GGPVGI T++A + E D IE + EPY++Q FI TPRGR+ Sbjct: 263 LTDRKILRTIIEAYHGGPVGIRTLAANIGEDTDTIEAVYEPYLLQHKFITMTPRGRVATQ 322 Query: 322 IAWQHLGIDIP 332 A+ LGI +P Sbjct: 323 KAYLQLGIPLP 333 >gi|226306412|ref|YP_002766372.1| Holliday junction DNA helicase RuvB [Rhodococcus erythropolis PR4] gi|259495675|sp|C0ZZ48|RUVB_RHOE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|226185529|dbj|BAH33633.1| Holliday junction DNA helicase RuvB [Rhodococcus erythropolis PR4] Length = 365 Score = 322 bits (824), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 159/332 (47%), Positives = 227/332 (68%), Gaps = 1/332 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 D E +S + D D+ + LRP++L++F GQ L++ + AK R DH+L Sbjct: 9 FDDESQVSAELVAGDGDVEASLRPKSLDDFIGQPRVREQLQLVLTGAKLRGSTPDHILMS 68 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ Sbjct: 69 GPPGLGKTSMAMIIAGELGSSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARP 128 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG + Sbjct: 129 AEEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHM 188 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FYE E+L+ I+ R A + G+ + +A EIA RSRGTPRIA RLLRRVRDFAEV Sbjct: 189 DFYEPEELQQILMRSAGILGVNLEVDAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGI 248 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AAL +D++G D+LD L+ + R+FGGGPVG+ T++ + E +E++ Sbjct: 249 VTMDVAQAALAVYDVDQLGLDRLDRSVLSALVRSFGGGPVGVSTLAVAVGEEPSTVEEVC 308 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EP++++ G I RTPRGR+ AW LG+ P Sbjct: 309 EPFLVRAGMIARTPRGRVATAAAWTQLGMTPP 340 >gi|291008206|ref|ZP_06566179.1| Holliday junction DNA helicase RuvB [Saccharopolyspora erythraea NRRL 2338] Length = 363 Score = 321 bits (823), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 159/324 (49%), Positives = 222/324 (68%), Gaps = 1/324 (0%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 + +++D + +L RPR L EF GQ L++ + A R + DHVLF GPPGLGKT+ Sbjct: 26 QETAEQDVETTL-RPRRLSEFVGQARVREQLELVLHGALNRGDQPDHVLFSGPPGLGKTS 84 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A ELG + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++ EE+LY AM Sbjct: 85 LAMIIAAELGASIRVTSGPALERPGDLAAMLSNLAEGDVLFIDEIHRIARPAEEMLYLAM 144 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG + FYE +L+ Sbjct: 145 EDYRVDIVVGKGPGATSIPLEIAPFTLVGATTRSGALTGPLRDRFGFTAHMEFYEPAELE 204 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 +V+R A + G+ + DE A EIA RSRGTPRIA RLLRRVRDFAEV +T ++A AA Sbjct: 205 LVVRRSAGILGVDLRDEGAVEIARRSRGTPRIANRLLRRVRDFAEVRADGAVTLDVARAA 264 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L +D+ G D+LD L + R+F GGPVG+ T++ + E +E++ EPY+++ G Sbjct: 265 LEVYDVDEHGLDRLDRAVLGALVRSFNGGPVGVSTLAVAVGEEPTTVEEVCEPYLVRAGM 324 Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333 + RTPRGR+ AWQHLG+ P Sbjct: 325 LARTPRGRVATVAAWQHLGLVPPQ 348 >gi|330466912|ref|YP_004404655.1| Holliday junction DNA helicase RuvB [Verrucosispora maris AB-18-032] gi|328809883|gb|AEB44055.1| Holliday junction DNA helicase RuvB [Verrucosispora maris AB-18-032] Length = 356 Score = 321 bits (823), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 161/331 (48%), Positives = 228/331 (68%), Gaps = 3/331 (0%) Query: 5 EGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 GL+S N ++ DA++S+ RP+ L+EF Q L + ++ A R DH+L GP Sbjct: 6 NGLVSAYVNDAERDAEVSV-RPKRLDEFIAQHRVRDQLDLLLQGAMRRGSPPDHILLSGP 64 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA +VA ELG R TSGP I ++GDLAA+LT+L + DVLFIDEIHR++ E Sbjct: 65 PGLGKTTLANIVAAELGAGIRVTSGPAIERSGDLAAILTSLAEGDVLFIDEIHRIAKPAE 124 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMEDF++D++VG+GP A ++ +++ FTL+ ATTR GLLT P++DRFG L+F Sbjct: 125 ELLYSAMEDFRVDVVVGKGPGATAIPLDVEPFTLVGATTRSGLLTGPMRDRFGFVAHLDF 184 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y DL+T++ R A++ G+ +TD+ A EIA RSRGTPRIA RLLRRVRD+AEV +T Sbjct: 185 YAPADLETLLHRSARILGVPITDDGAAEIAGRSRGTPRIANRLLRRVRDYAEVRADGVVT 244 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 + A +AL +D +G D+LD LT + +F GGPVG+ T++ + E D +E++ EP Sbjct: 245 LDTARSALTVYDVDALGLDRLDRAVLTALVDSFRGGPVGLSTLAVAVGEQPDTVEEVCEP 304 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++++ G + RTPRGR+ AW+HLG P+ Sbjct: 305 FLVRAGLLARTPRGRVATEAAWRHLGRTPPN 335 >gi|300787172|ref|YP_003767463.1| holliday junction DNA helicase RuvB [Amycolatopsis mediterranei U32] gi|299796686|gb|ADJ47061.1| holliday junction DNA helicase RuvB [Amycolatopsis mediterranei U32] Length = 350 Score = 321 bits (823), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 164/338 (48%), Positives = 229/338 (67%), Gaps = 5/338 (1%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+ E LS V + ++ LRPR L+EF GQ L++ +E+A+ R DHVL Sbjct: 1 MEEEEALSAWVQTGEENVEGTLRPRKLDEFVGQPRVREQLELVLESARRRGVPPDHVLLS 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT++A +VA ELG R TSGP + +AGDLAA+L+NL DVLFIDEIHR++ Sbjct: 61 GPPGLGKTSMAMIVAAELGAAIRITSGPALERAGDLAAMLSNLAPGDVLFIDEIHRIARP 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++ Sbjct: 121 AEEMLYLAMEDFRVDVVVGKGPGATSIPLEIAPFTLVGATTRSGSLTGPLRDRFGFTGQM 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +L+ +V+R A + + + + EIA RSRGTPRIA RLLRRVRD+AEV Sbjct: 181 EFYTDAELELVVRRAATILDIPIDRDGCAEIAGRSRGTPRIANRLLRRVRDYAEVRADGK 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +TR++A AAL +D++G D+LD LT + R+FGGGPVGI T++ + E +E++ Sbjct: 241 VTRDVARAALAVYDVDELGLDRLDRAVLTALTRSFGGGPVGISTLAVAVGEEATTVEEVC 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI----DIPHR 334 EPY+++ G + RTPRGR+ AW+HLG+ D+P R Sbjct: 301 EPYLVRAGMLARTPRGRVATATAWEHLGLVPPADLPGR 338 >gi|295112190|emb|CBL28940.1| Holliday junction DNA helicase subunit RuvB [Synergistetes bacterium SGP1] Length = 358 Score = 321 bits (823), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 164/322 (50%), Positives = 224/322 (69%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S A+ + +RPR L +F GQ L+++I+AA+ R E LDHVLF GPPGLGKTTLA+ Sbjct: 20 SPRAAEDATVRPRALADFIGQERVREKLRIYIDAARGRGEPLDHVLFYGPPGLGKTTLAE 79 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A+E+G R T+GP + +AGDLAA+++NLE DVLFIDEIH + VEEILYPAMEDF Sbjct: 80 IIAQEMGGQLRKTTGPALERAGDLAAIVSNLEANDVLFIDEIHSMPRQVEEILYPAMEDF 139 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +L ++VG+GP A+++ + L RFTL ATTR+GLLT+PL+ RFGI +L+ Y ++L IV Sbjct: 140 ELHIVVGKGPLAKTIGLALPRFTLCGATTRLGLLTSPLRARFGIVEQLSLYTEQELARIV 199 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A + G+ + +AA EIA R+RGTPR+ +LLRRVRD A V I +IAD A+ Sbjct: 200 LRAAGVLGIRIAGDAAIEIARRARGTPRVVLKLLRRVRDVASVKGTGEIDADIADRAMNM 259 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L ID G D+ D + L + F GGPVG+ TI+A ++E IED+ EPY+IQ+GF++R Sbjct: 260 LDIDAEGMDEGDRQILRAVVERFDGGPVGLGTIAAAINEEPQTIEDIYEPYLIQKGFLER 319 Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334 TPRGR A+ +LG + R Sbjct: 320 TPRGRRATSNAYAYLGCPMRRR 341 >gi|134098597|ref|YP_001104258.1| Holliday junction DNA helicase RuvB [Saccharopolyspora erythraea NRRL 2338] gi|172044126|sp|A4FBA8|RUVB_SACEN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|133911220|emb|CAM01333.1| Holliday junction DNA helicase RuvB [Saccharopolyspora erythraea NRRL 2338] Length = 353 Score = 321 bits (823), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 159/324 (49%), Positives = 222/324 (68%), Gaps = 1/324 (0%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 + +++D + +L RPR L EF GQ L++ + A R + DHVLF GPPGLGKT+ Sbjct: 16 QETAEQDVETTL-RPRRLSEFVGQARVREQLELVLHGALNRGDQPDHVLFSGPPGLGKTS 74 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 LA ++A ELG + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++ EE+LY AM Sbjct: 75 LAMIIAAELGASIRVTSGPALERPGDLAAMLSNLAEGDVLFIDEIHRIARPAEEMLYLAM 134 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ED+++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG + FYE +L+ Sbjct: 135 EDYRVDIVVGKGPGATSIPLEIAPFTLVGATTRSGALTGPLRDRFGFTAHMEFYEPAELE 194 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 +V+R A + G+ + DE A EIA RSRGTPRIA RLLRRVRDFAEV +T ++A AA Sbjct: 195 LVVRRSAGILGVDLRDEGAVEIARRSRGTPRIANRLLRRVRDFAEVRADGAVTLDVARAA 254 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L +D+ G D+LD L + R+F GGPVG+ T++ + E +E++ EPY+++ G Sbjct: 255 LEVYDVDEHGLDRLDRAVLGALVRSFNGGPVGVSTLAVAVGEEPTTVEEVCEPYLVRAGM 314 Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333 + RTPRGR+ AWQHLG+ P Sbjct: 315 LARTPRGRVATVAAWQHLGLVPPQ 338 >gi|159029417|emb|CAO90793.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 362 Score = 321 bits (823), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 159/327 (48%), Positives = 228/327 (69%), Gaps = 2/327 (0%) Query: 5 EGLLSRNVSQEDADIS--LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 E LL+ N + E+ + + +RP++LE++ GQ + +NLKV I AAKAR EA+DH+LF GP Sbjct: 19 ENLLTPNPTIEETEKAEAQIRPQSLEDYIGQQDLKANLKVTIAAAKARQEAIDHLLFYGP 78 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTT+A ++A ++GVN R T+ P + + D+ +L NL+ RD+LFIDEIHRL+ + E Sbjct: 79 PGLGKTTMALILAAQMGVNCRITAAPALERPRDITGILINLQPRDILFIDEIHRLNRVTE 138 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LYPAMED++LD+ +G+G +A+ I+L FTLI ATT+VG LT PL+DRFG+ RL F Sbjct: 139 ELLYPAMEDYRLDVTIGKGQAAKIRSISLPPFTLIGATTKVGSLTAPLRDRFGMIQRLRF 198 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y +E+L I+ R A + + +T+ A EIA RSRGTPRIA RLL+RVRD+ +V IT Sbjct: 199 YTVEELTAIMLRSATIFNIPITEAGAIEIARRSRGTPRIANRLLKRVRDYVQVKGETIIT 258 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 ++A L +L +D MG D D L + F G PVG+E ++A E IE++ EP Sbjct: 259 PQLAAEGLNQLNVDSMGLDWTDRLVLKTMIEQFQGKPVGLEAVAAATGEDAKTIEEVYEP 318 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329 Y++Q G++ RTPRGR++ A++HLG+ Sbjct: 319 YLLQIGYLHRTPRGRVVTAAAYEHLGL 345 >gi|313884066|ref|ZP_07817832.1| Holliday junction DNA helicase RuvB [Eremococcus coleocola ACS-139-V-Col8] gi|312620513|gb|EFR31936.1| Holliday junction DNA helicase RuvB [Eremococcus coleocola ACS-139-V-Col8] Length = 343 Score = 321 bits (823), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 157/309 (50%), Positives = 213/309 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L ++I+AA+ R EALDHVL GPPGLGKTTLA V+A EL V Sbjct: 28 LRPKFLREYIGQNKVKEALAIYIQAARQRQEALDHVLLYGPPGLGKTTLAMVIANELEVG 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I + GDL ALL L D+LFIDEIHRL +VEE+LY AMED+ +D++VG+G Sbjct: 88 IQTTSGPAIERPGDLIALLNELNPGDILFIDEIHRLPRVVEEVLYSAMEDYFVDIVVGQG 147 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +++ + L FTLI ATTR G+LT PL++RFGI + + +Y DL+ IV+R A + + Sbjct: 148 STSQPIHFQLPPFTLIGATTRAGMLTQPLRERFGIVMHMEYYSQADLQLIVERSANIFDV 207 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EI+ RSRGTPR+A R+LRRVRDFA+V H IT+ + AL L ID G D Sbjct: 208 GIESQGALEISRRSRGTPRVANRILRRVRDFAQVKHDGVITQAVTQEALKLLEIDDKGLD 267 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 Q D + L + + GGPVG+ TI+ +SE +ED+ EPY++Q GF+QRTPRGR++ Sbjct: 268 QTDRKLLKAMIDLYQGGPVGLNTIAVNISEDIGTVEDMYEPYLLQIGFLQRTPRGRVVTR 327 Query: 322 IAWQHLGID 330 A+ HL I+ Sbjct: 328 QAYDHLKIE 336 >gi|238855609|ref|ZP_04645910.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 269-3] gi|260665331|ref|ZP_05866179.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii SJ-7A-US] gi|282933017|ref|ZP_06338411.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 208-1] gi|313473094|ref|ZP_07813578.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 1153] gi|238831753|gb|EEQ24089.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 269-3] gi|239528669|gb|EEQ67670.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 1153] gi|260560835|gb|EEX26811.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii SJ-7A-US] gi|281302871|gb|EFA95079.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 208-1] Length = 337 Score = 321 bits (823), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 159/311 (51%), Positives = 215/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++ ++ GQ S ++++I+AAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 24 LRPQSFSQYIGQKRVKSEMEIYIQAAKKRDEALDHVLLYGPPGLGKTTMAFVIANELGVN 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP I +AGDL ALL++L+ DVLFIDEIHRL+ +EEILY AMED+ +D++VGEG Sbjct: 84 LKNTSGPAIERAGDLVALLSDLDPGDVLFIDEIHRLAKPIEEILYSAMEDYYVDIVVGEG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++ +V + L FTLI ATTR G L+ PL+DRFGI + +Y I DL+ I+QR +++ Sbjct: 144 STSHAVHVPLPPFTLIGATTRAGDLSAPLRDRFGIVEHMQYYTIGDLEKIIQRSSEVFST 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A RSRGTPR+A RLL+RVRD+A+V I+ AL +L +D G D Sbjct: 204 KIGKEAAHELARRSRGTPRVANRLLKRVRDYAQVKEENKISLATTKYALDQLQVDNEGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D + L I + GGPVGI T++A + E D IE + EPY++Q FI TPRGR+ Sbjct: 264 LTDRKILRTIIEAYHGGPVGIRTLAANIGEDTDTIEAVYEPYLLQHKFITMTPRGRVATQ 323 Query: 322 IAWQHLGIDIP 332 A+ LGI +P Sbjct: 324 KAYLQLGIPLP 334 >gi|229491963|ref|ZP_04385780.1| holliday junction DNA helicase RuvB [Rhodococcus erythropolis SK121] gi|229321095|gb|EEN86899.1| holliday junction DNA helicase RuvB [Rhodococcus erythropolis SK121] Length = 365 Score = 321 bits (823), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 159/332 (47%), Positives = 227/332 (68%), Gaps = 1/332 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 D E +S + D D+ + LRP++L++F GQ L++ + AK R DH+L Sbjct: 9 FDDESQVSAELVAGDGDVEASLRPKSLDDFIGQPRVREQLQLVLTGAKLRGSTPDHILMS 68 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ Sbjct: 69 GPPGLGKTSMAMIIAGELGSSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARP 128 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG + Sbjct: 129 AEEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHM 188 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FYE E+L+ I+ R A + G+ + +A EIA RSRGTPRIA RLLRRVRDFAEV Sbjct: 189 DFYEPEELQQILMRSAGILGVDLEVDAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGI 248 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AAL +D++G D+LD L+ + R+FGGGPVG+ T++ + E +E++ Sbjct: 249 VTMDVAQAALAVYDVDQLGLDRLDRSVLSALVRSFGGGPVGVSTLAVAVGEEPSTVEEVC 308 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EP++++ G I RTPRGR+ AW LG+ P Sbjct: 309 EPFLVRAGMIARTPRGRVATAAAWTQLGMTPP 340 >gi|194335811|ref|YP_002017605.1| Holliday junction DNA helicase RuvB [Pelodictyon phaeoclathratiforme BU-1] gi|238693394|sp|B4SDZ7|RUVB_PELPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|194308288|gb|ACF42988.1| Holliday junction DNA helicase RuvB [Pelodictyon phaeoclathratiforme BU-1] Length = 344 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 160/297 (53%), Positives = 211/297 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++ F GQ NL+VFI AAK R EALDHVL GPPGLGKTTLA ++A E+G + Sbjct: 21 IRPLRMDAFAGQQRLTDNLRVFISAAKMRGEALDHVLLSGPPGLGKTTLAYIIASEMGSS 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +STSGP++ KAG+LA LLT L+ DVLFIDEIHR+ VEE LY AMEDF++D+M+ G Sbjct: 81 IKSTSGPLLDKAGNLAGLLTGLQKGDVLFIDEIHRMPPTVEEYLYSAMEDFRIDIMLDSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR+V++ + FTL+ ATTR GLLT+PL+ RFGI R ++Y E L+ I++R + + G+ Sbjct: 141 PSARAVQLRIEPFTLVGATTRSGLLTSPLRARFGINSRFDYYAPELLEGIIRRASTILGI 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA EIA RSRGTPRIA RLLRR RDFA+V I+R IA L L ID+ G D Sbjct: 201 GIDAEAASEIAGRSRGTPRIANRLLRRARDFAQVDGESFISRSIAMKTLDCLEIDEEGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318 +D + + I F GGPVGI +++ + E +D IE++ EPY+IQ G++ RT RGR+ Sbjct: 261 DMDKKIMETIVNKFNGGPVGIASLAVSVGEEQDTIEEVYEPYLIQAGYLTRTTRGRV 317 >gi|229817635|ref|ZP_04447917.1| hypothetical protein BIFANG_02905 [Bifidobacterium angulatum DSM 20098] gi|229785424|gb|EEP21538.1| hypothetical protein BIFANG_02905 [Bifidobacterium angulatum DSM 20098] Length = 353 Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 161/321 (50%), Positives = 219/321 (68%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+ + E LRP L+ F GQ + + L++F++AA+ R DH+L GPPGLGKT Sbjct: 22 SQPIGNEPVSDEELRPHVLDGFIGQPQLKAQLRLFLDAARKRETPPDHILLAGPPGLGKT 81 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VA EL V R TSGP I AGDLA++L++LE +VLF+DE+HRL EE+LY A Sbjct: 82 TLAMIVANELEVPIRITSGPAIQHAGDLASILSSLEPGEVLFVDEVHRLPRAAEELLYIA 141 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY E+L Sbjct: 142 MEDFRVDVMVGKGPGASSIPLTLPRFTMIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 201 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + +V+R A + GL + EAA E+A+RSRGTPRIA RLLRRVRD+ V + E Sbjct: 202 EKLVERSAGVLGLRIDREAAHELALRSRGTPRIANRLLRRVRDWVIVHDLPQASAEDVRQ 261 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL ID G D+LD+ L I RNF GGPVG+ T++A + E + +E + EPY++++G Sbjct: 262 ALALYQIDAEGLDRLDIAVLNAIVRNFQGGPVGLNTLAAMVGEESETVETVCEPYLVREG 321 Query: 309 FIQRTPRGRLLMPIAWQHLGI 329 F+ RTP+GR+ P AWQHLG+ Sbjct: 322 FLIRTPKGRVATPKAWQHLGM 342 >gi|269123851|ref|YP_003306428.1| Holliday junction DNA helicase RuvB [Streptobacillus moniliformis DSM 12112] gi|268315177|gb|ACZ01551.1| Holliday junction DNA helicase RuvB [Streptobacillus moniliformis DSM 12112] Length = 334 Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 155/313 (49%), Positives = 215/313 (68%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +I+ LRP+ +++ GQ + L + I+AAK R EALDH+L GPPGLGKTT+A V+A E Sbjct: 20 EINSLRPQLFKDYIGQEDLKETLSISIKAAKIRQEALDHILLFGPPGLGKTTMATVIANE 79 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +G N + TSGPV+ KAGDL ++LT LED DVLFIDEIHRLS +EEILY AMEDF++D+M Sbjct: 80 MGTNIKITSGPVLEKAGDLVSILTTLEDGDVLFIDEIHRLSTNIEEILYSAMEDFKVDIM 139 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 +G+G A S ++ L RFTLI ATT G L+ P +DRFGI R+NFY E+L I+ R A Sbjct: 140 LGKGHGATSYRVELKRFTLIGATTMAGKLSKPFKDRFGIQHRMNFYTTEELMKIISRSAN 199 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 + G+ + + +IA+RSRGTPR+A R+L+R RD+A V I EI + L +D Sbjct: 200 ILGVECRENSLRDIALRSRGTPRLANRVLKRSRDYATVNGNGIINDEIMKEVIRILKVDD 259 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G D++D L I N+ GGPVG+ET++ L E R IE++ EPY+IQ G ++ + RGR Sbjct: 260 RGLDEMDRSLLRSIIINYSGGPVGVETLATHLGEDRKTIEEVYEPYLIQLGLLKISLRGR 319 Query: 318 LLMPIAWQHLGID 330 + +A+ H+G++ Sbjct: 320 EVTDLAYTHMGLE 332 >gi|119486176|ref|ZP_01620236.1| Holliday junction DNA helicase [Lyngbya sp. PCC 8106] gi|119456667|gb|EAW37796.1| Holliday junction DNA helicase [Lyngbya sp. PCC 8106] Length = 374 Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 161/312 (51%), Positives = 215/312 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ + ++ GQ + L++ I AAK+R E LDH+L GPPGLGKTT+A ++A E+GV Sbjct: 56 IRPQRICDYIGQKDLKEVLEIAIAAAKSRNETLDHLLLYGPPGLGKTTMALILASEMGVT 115 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P I K D+A LL NL+ ++LFIDEIHRLS + EEILYPAMED +LD+ +G+G Sbjct: 116 CKITTAPAIEKPRDIAGLLVNLKPGEILFIDEIHRLSKMAEEILYPAMEDCRLDITIGQG 175 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SA++ I L+ FT++ ATTR+G LT+PL+DRFG+ RL FYE+++L IV+R AKL Sbjct: 176 RSAKTRSIPLTPFTIVGATTRIGALTSPLRDRFGLIQRLRFYEVDELSLIVERTAKLLNT 235 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRIA RLL+RVRD+ EV + IT EIA AL +D MG D Sbjct: 236 PINPDGAEEIARRSRGTPRIANRLLKRVRDYVEVKASGPITGEIAATALQLFNVDPMGLD 295 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D L + NF GGPVG+ET++A E IE++ EPY++Q GF+QRT RGRL Sbjct: 296 WTDRHLLQKMIENFNGGPVGLETMAATTGEDAQTIEEVYEPYLMQIGFLQRTHRGRLATA 355 Query: 322 IAWQHLGIDIPH 333 AW+HLG P Sbjct: 356 SAWKHLGYSPPE 367 >gi|227503512|ref|ZP_03933561.1| crossover junction endodeoxyribonuclease [Corynebacterium accolens ATCC 49725] gi|227076015|gb|EEI13978.1| crossover junction endodeoxyribonuclease [Corynebacterium accolens ATCC 49725] Length = 359 Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 159/340 (46%), Positives = 221/340 (65%), Gaps = 12/340 (3%) Query: 5 EGLLSRNVSQEDADISL------------LRPRTLEEFTGQVEACSNLKVFIEAAKARAE 52 EG+ + SQ ++D+ LRP++L EF GQ + L + + AK R Sbjct: 13 EGMSKAHESQHNSDVEATAHAEEHDIERSLRPKSLTEFIGQPKVREQLSLVLTGAKNRGV 72 Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 DHVL GPPGLGKTT+A ++++ELG + R TSGP + +AGDLAA+L+NL + DVLFID Sbjct: 73 TPDHVLLSGPPGLGKTTMAMIISQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFID 132 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 EIHR++ EE+LY AMEDF++D++VG+GP A S+ + + FTL+ ATTR G+LT PL+D Sbjct: 133 EIHRIARPAEEMLYMAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRD 192 Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 RFG ++ +Y EDL +++R A + +A+ D+AA EI RSRGTPRIA RLLRRVRD+ Sbjct: 193 RFGFTAQMEYYSTEDLTRVIKRAAHILDVAIDDDAAVEIGSRSRGTPRIANRLLRRVRDY 252 Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292 AEV I A AL +D+MG D+LD L + GGGPVG+ T++ + E Sbjct: 253 AEVNGTGRIDLSAAQGALEVFDVDEMGLDRLDRAVLNALINGHGGGPVGVNTLAIAVGEE 312 Query: 293 RDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +E++ EPY+++ G I RT RGR+ AWQHLG+ P Sbjct: 313 PSTVEEVCEPYLVRAGMISRTGRGRVATAAAWQHLGLTPP 352 >gi|238063871|ref|ZP_04608580.1| Holliday junction DNA helicase subunit ruvB [Micromonospora sp. ATCC 39149] gi|237885682|gb|EEP74510.1| Holliday junction DNA helicase subunit ruvB [Micromonospora sp. ATCC 39149] Length = 356 Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 160/323 (49%), Positives = 223/323 (69%), Gaps = 1/323 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N ++ DA+ S+ RP+ LEEF Q L + + +A R DH+L GPPGLGKTTL Sbjct: 14 NDAERDAEASV-RPKRLEEFIAQHRVREQLDLLLRSAMRRGSPPDHILLSGPPGLGKTTL 72 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A +VA ELG R TSGP I ++GDLAA+LT+L + DVLFIDEIHR++ EE+LY AME Sbjct: 73 ANIVAAELGAGIRVTSGPAIERSGDLAAILTSLGEGDVLFIDEIHRIAKPAEELLYSAME 132 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF++D++VG+GP A ++ +++ FTL+ ATTR GLLT P++DRFG L+FY DL+ Sbjct: 133 DFRVDVVVGKGPGATAIPLDVEPFTLVGATTRSGLLTGPMRDRFGFVAHLDFYSPADLEV 192 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 +++R A++ G+ +TD+ A EI+ RSRGTPRIA RLLRRVRDFAEV +T E A AAL Sbjct: 193 LLRRSARILGVPITDDGAVEISGRSRGTPRIANRLLRRVRDFAEVRADGVVTVETARAAL 252 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +D +G D+LD LT + +F GGPVG+ T++ + E D +E++ EP++++ G + Sbjct: 253 TVYDVDALGLDRLDRAVLTALVDSFRGGPVGLSTLAVAVGEQPDTVEEVCEPFLVRAGLL 312 Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333 RTPRGR+ AW+HLG P+ Sbjct: 313 ARTPRGRVATEAAWRHLGRTPPN 335 >gi|150021414|ref|YP_001306768.1| Holliday junction DNA helicase RuvB [Thermosipho melanesiensis BI429] gi|172048671|sp|A6LN82|RUVB_THEM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|149793935|gb|ABR31383.1| Holliday junction DNA helicase RuvB [Thermosipho melanesiensis BI429] Length = 313 Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 156/305 (51%), Positives = 216/305 (70%) Query: 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 + E+ GQ L + I+A+K R EALDHVL VGPPGLGKTTLA +++ ELG N TS Sbjct: 1 MNEYIGQGNIKKRLGLAIKASKIRKEALDHVLLVGPPGLGKTTLAHIISNELGTNIHVTS 60 Query: 87 GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 GP++ K GD+AA+LTNLE DVLFIDEIHR++ VEEILY AMEDFQ+D+++G+GPSARS Sbjct: 61 GPILEKQGDVAAILTNLEHGDVLFIDEIHRMNRSVEEILYTAMEDFQIDILIGKGPSARS 120 Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 ++I+L FTL+ ATTR GLL+ PL++RFG+ + L+FY I++L I++R A + + + + Sbjct: 121 IRIDLQPFTLVGATTRSGLLSAPLRNRFGLIMELDFYSIDELSKIIERAAIVLNVEIEKD 180 Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266 AA +A RSRGTPRIA RLLRRVRD + + I + + + L IDK G D+LD + Sbjct: 181 AAILLAKRSRGTPRIALRLLRRVRDMSTIRGKVKIDIYMVEEIMFLLGIDKEGLDELDRK 240 Query: 267 YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQH 326 L I + GGPVG+++++A + D+I ++ EPY++Q GFI RT RGR+ A+ H Sbjct: 241 ILRTIIEVYNGGPVGVKSLAASVGISEDSISEVYEPYLLQSGFIARTHRGRIATKKAYNH 300 Query: 327 LGIDI 331 LGI + Sbjct: 301 LGIKV 305 >gi|256391549|ref|YP_003113113.1| Holliday junction DNA helicase RuvB [Catenulispora acidiphila DSM 44928] gi|256357775|gb|ACU71272.1| Holliday junction DNA helicase RuvB [Catenulispora acidiphila DSM 44928] Length = 337 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 160/320 (50%), Positives = 219/320 (68%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 ++E A + LRP+ L EF GQ + L + + AA+ R A DH+L GPPGLGKTTL+ Sbjct: 18 TEEQAADAALRPKRLAEFVGQPKVRDQLSLVLAAARMREAAPDHILLSGPPGLGKTTLSM 77 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A EL V R TSGP I AGDLAA+L++L D +VLF+DEIHR+S EE+LY AMEDF Sbjct: 78 IIANELRVPIRITSGPAIQHAGDLAAILSSLADGEVLFVDEIHRMSRPAEEMLYMAMEDF 137 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 ++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG L FY+ DL+ +V Sbjct: 138 RVDVIVGKGPGATAIPLELPPFTLVGATTRSGLLPAPLRDRFGFTAHLEFYDAADLEHVV 197 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A+L G+ + EAA E+A RSRGTPRI RLLRRVRD+AEV T+T EIA AAL Sbjct: 198 NRSARLLGVRIVAEAAKELAGRSRGTPRIVNRLLRRVRDYAEVKADGTVTLEIARAALDV 257 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 +D+ G D+LD L + + FGGGPVG+ T++ + E + +E++ EP+++++G + R Sbjct: 258 YEVDERGLDRLDRAVLHALLKLFGGGPVGLSTLAVAVGEESETVEEVAEPFLVREGLLAR 317 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 TPRGR+ AW H G+ P Sbjct: 318 TPRGRIATAAAWAHFGLSAP 337 >gi|29833377|ref|NP_828011.1| Holliday junction DNA helicase RuvB [Streptomyces avermitilis MA-4680] gi|44888445|sp|Q820F3|RUVB_STRAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|29610500|dbj|BAC74546.1| putative Holliday junction DNA helicase subunit A [Streptomyces avermitilis MA-4680] Length = 356 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 161/331 (48%), Positives = 224/331 (67%), Gaps = 1/331 (0%) Query: 5 EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E L+ + +ED + + LRP+ L+EF GQ + L + + AA+AR DHVL G P Sbjct: 13 ERLVGASADREDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATSDHVLLSGAP 72 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+G R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE Sbjct: 73 GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LY AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E +L+ ++ R A L + + A EIA RSRGTPRIA RLLRRVRD+A+V ITR Sbjct: 193 EPHELERVIHRSAGLLDVEIDSRGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITR 252 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EIA AAL +D G D+LD L + + FGGGPVG+ T++ + E R+ +E++ EP+ Sbjct: 253 EIAAAALKVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 312 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++++G + RTPRGR+ P AW HLG+ P R Sbjct: 313 LVREGLLARTPRGRVATPAAWAHLGLTPPPR 343 >gi|269126345|ref|YP_003299715.1| Holliday junction DNA helicase RuvB [Thermomonospora curvata DSM 43183] gi|268311303|gb|ACY97677.1| Holliday junction DNA helicase RuvB [Thermomonospora curvata DSM 43183] Length = 353 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 162/335 (48%), Positives = 228/335 (68%), Gaps = 3/335 (0%) Query: 1 MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M D + L+S +E A + LRP+ L++F GQ L + + +A R DHV Sbjct: 1 MSDHDRLVSPRAGADGEERAIEAALRPKRLDDFVGQQRVREQLSLVLHSALRRGRTPDHV 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L G PGLGKTTLA ++A ELG R TSGP I +AGDLAA+L+ L + +VLF+DEIHR+ Sbjct: 61 LLSGGPGLGKTTLAMIIAEELGKPLRITSGPAIERAGDLAAVLSTLSEGEVLFLDEIHRM 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 + EE+LY AMEDF++D++VG+GP A ++ ++++ FTL+ ATTR G+L PL+DRFG Sbjct: 121 ARPAEEMLYMAMEDFRVDVVVGKGPGATAIPLDIAPFTLVGATTRAGMLPGPLRDRFGFV 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 ++FYE +L+ I++R A+L G+ + D+ A EIA RSRGTPRIA RLLRRVRD+AEV Sbjct: 181 AHMDFYEPAELEIIIRRSARLLGVRIEDDGAAEIAARSRGTPRIANRLLRRVRDYAEVRA 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 ITRE+A AAL +D+ G D+LD L + R FGGGPVG+ T++ + E + +E Sbjct: 241 DGVITRELARAALTLYEVDERGLDRLDRAVLGALLRKFGGGPVGLSTLAVSVGEEPETVE 300 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 + EP++++QG + RTPRGR+ P AW+HLG+ P Sbjct: 301 VVAEPFLVRQGLLARTPRGRIATPAAWRHLGLTPP 335 >gi|186684524|ref|YP_001867720.1| Holliday junction DNA helicase RuvB [Nostoc punctiforme PCC 73102] gi|238691198|sp|B2ITR9|RUVB_NOSP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|186466976|gb|ACC82777.1| Holliday junction DNA helicase RuvB [Nostoc punctiforme PCC 73102] Length = 366 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 156/312 (50%), Positives = 215/312 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++ GQ + L + I+AAK+R E LDH+L GPPGLGKTT+A ++A E+GVN Sbjct: 49 IRPHRFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASEMGVN 108 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++ TS P + + D+ LL N++ D+LF+DEIHRLS + EEILYPAMED++LD+ +G+G Sbjct: 109 YKITSAPALERPRDIVGLLVNMKPGDILFVDEIHRLSRMTEEILYPAMEDYRLDITIGKG 168 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SAR + LS+FTL+ ATTRVG LT+PL+DRFG+ +L FYE+++L IV R A+L Sbjct: 169 SSARIRSLPLSKFTLVGATTRVGALTSPLRDRFGLIQKLRFYEVDELTQIVLRTAQLLKT 228 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 VT + A EIA RSRGTPRIA RLL+RVRD+AEV + I IA AL +D G D Sbjct: 229 PVTQDGATEIARRSRGTPRIANRLLKRVRDYAEVKVSGVINESIASEALQLFQVDPCGLD 288 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D + L++I F GGPVG+ET++A E IE++ EPY++Q G++ RT RGR+ Sbjct: 289 WTDRQMLSVIIEQFNGGPVGLETMAAATGEDTQTIEEVYEPYLMQIGYLTRTHRGRMATK 348 Query: 322 IAWQHLGIDIPH 333 A++HLG P+ Sbjct: 349 AAYKHLGFTPPN 360 >gi|332638255|ref|ZP_08417118.1| Holliday junction DNA helicase RuvB [Weissella cibaria KACC 11862] Length = 336 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 163/327 (49%), Positives = 221/327 (67%), Gaps = 5/327 (1%) Query: 10 RNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 R+ S E + S+ LRP TL ++ GQ L+V+I+AA+ R E LDHVL GPPGLG Sbjct: 7 RDTSAELGEESIEKSLRPSTLRQYIGQEPLKQRLQVYIQAARQREEPLDHVLLYGPPGLG 66 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA V+A E+GV R+TSGP I K+GDL ALL L+ DVLFIDEIHR+ VEE+LY Sbjct: 67 KTTLAMVIANEMGVGLRTTSGPAIEKSGDLLALLNELQPGDVLFIDEIHRMPKTVEEMLY 126 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMEDF +D++ GEGP+AR + L FTLI ATTR G+L+ PL+DRFGI + +Y + Sbjct: 127 SAMEDFYVDIIAGEGPTARPIHFPLPPFTLIGATTRAGMLSQPLRDRFGIVEHMAYYNTD 186 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L I++R A + + + A E+A RSRGTPR+A RLLRRVRDFA V I ++ Sbjct: 187 ELAEIIKRSADIFDTEIQPDGAFELARRSRGTPRVANRLLRRVRDFAMVKDRDYIDDDMV 246 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 + +L L +D+ G D++D + L + + GGPVG+ TI+A + E D IE + EPY++Q Sbjct: 247 NFSLDLLKVDEAGLDEVDHKILRTMIEFYQGGPVGVNTIAANIGEEVDTIESMYEPYLLQ 306 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 GF+QRTPRGR++ A+ HL D+P+ Sbjct: 307 IGFLQRTPRGRVVTQAAYAHL--DLPY 331 >gi|257055538|ref|YP_003133370.1| Holliday junction DNA helicase subunit RuvB [Saccharomonospora viridis DSM 43017] gi|256585410|gb|ACU96543.1| Holliday junction DNA helicase subunit RuvB [Saccharomonospora viridis DSM 43017] Length = 374 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 156/313 (49%), Positives = 217/313 (69%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 + LRPRTL+ F GQ L++ +E+A+ R DHVL GPPGLGKT+LA ++A EL Sbjct: 47 TTLRPRTLDSFVGQPRVREQLQLVLESARKRGVPPDHVLLSGPPGLGKTSLAMIIAAELD 106 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + R TSGP + KAGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF++D++VG Sbjct: 107 TSIRITSGPALEKAGDLAAMLSNLAEGDVLFIDEIHRIARPAEEMLYLAMEDFRVDVVVG 166 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GP A S+ + + FTL+ ATTR G LT PL+DRFG ++ FY E+L+ +++R A + Sbjct: 167 KGPGATSIPLEIPPFTLVGATTRSGALTGPLRDRFGFTGQMEFYTPEELEQVLKRSASIL 226 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 G+A+ DE EIA RSRGTPRIA RLLRRVRD+AEV T + AAL +D++G Sbjct: 227 GIAIDDEGRAEIARRSRGTPRIANRLLRRVRDYAEVRADGVATLPVVRAALQVYDVDELG 286 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D+LD L + R+F GGPVG+ T++ + E +E++ EPY+++ G + RTPRGR+ Sbjct: 287 LDRLDRAVLDALVRSFNGGPVGVSTLAVAVGEEPTTVEEVCEPYLVRAGMLARTPRGRVA 346 Query: 320 MPIAWQHLGIDIP 332 +AW+HLG+ P Sbjct: 347 TALAWEHLGLQPP 359 >gi|225629667|ref|ZP_03787653.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591479|gb|EEH12533.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 266 Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 156/254 (61%), Positives = 201/254 (79%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 EDA +RP L++F GQ + NLKVFI AA+ R EALDHVL GPPGLGKTTLAQ+V Sbjct: 12 EDARNINIRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIV 71 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ++EL V+FR+TSGP+++KAGDLAA+LT L +DVLFIDEIHRL+ +EE+LY AMEDF L Sbjct: 72 SKELRVSFRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCL 131 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VGEGPS R+++I+L FTLI ATTR+GLL+ PL+DRFGIP+ L FY E+L I++R Sbjct: 132 DILVGEGPSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKR 191 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 GA++ + ++AA EIA R+RGTPRIA RLLRR+RDF EV K IT E+AD+ LL+L Sbjct: 192 GARVLSAEIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLG 251 Query: 255 IDKMGFDQLDLRYL 268 +DKMG ++LD+ YL Sbjct: 252 VDKMGLNKLDMNYL 265 >gi|312196178|ref|YP_004016239.1| Holliday junction DNA helicase RuvB [Frankia sp. EuI1c] gi|311227514|gb|ADP80369.1| Holliday junction DNA helicase RuvB [Frankia sp. EuI1c] Length = 362 Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 156/311 (50%), Positives = 218/311 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL EF GQ +A L + + A+ R DHVL GPPGLGKT+LA ++A+EL V Sbjct: 22 LRPRTLAEFVGQRKAREQLSIMLAGARGRGRPPDHVLLSGPPGLGKTSLAMIIAQELAVP 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I +AGDL A+LT L +VLFIDEIHR++ EE+LY AMEDF++D+++G+G Sbjct: 82 LRLTSGPAIERAGDLVAILTALAPGEVLFIDEIHRIARPAEELLYSAMEDFRVDVVLGKG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ ++++ FTL+ ATTR GLLT P++DRFG L+FY+ ++L ++ R A+L G+ Sbjct: 142 PGATAIPLDVAPFTLVGATTRAGLLTGPMRDRFGFTAHLDFYDPDELVAVLARSARLLGV 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T E A E+A RSRGTPRIA RLLRRVRD+AEV +T ++A AAL +D +G D Sbjct: 202 ELTPEGATEVAGRSRGTPRIANRLLRRVRDYAEVRADGVVTLDVAHAALRVYDVDPLGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD LT + + FGGGPVG+ T++ + E + +ED+ EP++++ G + RT RGR+ P Sbjct: 262 RLDRAVLTALVKRFGGGPVGLTTLAVSVGEEPETVEDVAEPFLLRAGLLVRTSRGRVATP 321 Query: 322 IAWQHLGIDIP 332 A+ HLG D P Sbjct: 322 AAFTHLGFDPP 332 >gi|240173174|ref|ZP_04751832.1| Holliday junction DNA helicase RuvB [Mycobacterium kansasii ATCC 12478] Length = 347 Score = 319 bits (817), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 167/330 (50%), Positives = 230/330 (69%), Gaps = 1/330 (0%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 DR+ + V + D D SL RPR+L EF GQ L++ IE A+ R DH+L GP Sbjct: 6 DRDVSPALAVGEGDIDGSL-RPRSLREFIGQPRVREQLQLVIEGARNRGGTPDHILLSGP 64 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL D DVLFIDEIHR++ E Sbjct: 65 PGLGKTSLAMIIAGELGSSLRVTSGPALERAGDLAAMLSNLVDHDVLFIDEIHRIARPAE 124 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++F Sbjct: 125 EMLYLAMEDFRVDVVVGKGPGATSIPLEIAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 184 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE +L+ ++ R A + G+ + EAA EIA RSRGTPRIA RLLRRVRDFAEV IT Sbjct: 185 YEPAELERVLARSAGILGIQLGAEAAAEIARRSRGTPRIANRLLRRVRDFAEVRADGVIT 244 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 R++A AAL +D++G D+LD L+ + R+FGGGPVG+ T++ + E +E++ EP Sbjct: 245 RDVAKAALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEAATVEEVCEP 304 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++ G + RTPRGR+ +AW HLG+ P Sbjct: 305 FLVRAGMVARTPRGRVATALAWTHLGMSPP 334 >gi|306836239|ref|ZP_07469222.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium accolens ATCC 49726] gi|304567893|gb|EFM43475.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium accolens ATCC 49726] Length = 336 Score = 318 bits (816), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 157/319 (49%), Positives = 215/319 (67%), Gaps = 1/319 (0%) Query: 15 EDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E+ DI LRP++L EF GQ + L + + AK R DHVL GPPGLGKTT+A + Sbjct: 11 EEHDIERSLRPKSLTEFIGQPKVREQLSLVLTGAKNRGVTPDHVLLSGPPGLGKTTMAMI 70 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +++ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF+ Sbjct: 71 ISQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFR 130 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D++VG+GP A S+ + + FTL+ ATTR G+LT PL+DRFG ++ +Y EDL +++ Sbjct: 131 IDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYSTEDLTRVIK 190 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A + +A+ D+AA EI RSRGTPRIA RLLRRVRD+AEV I A AL Sbjct: 191 RAAHILDVAIDDDAAVEIGSRSRGTPRIANRLLRRVRDYAEVNGTGRIDLSAAQGALEVF 250 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D+MG D+LD L + GGGPVG+ T++ + E +E++ EPY+++ G I RT Sbjct: 251 DVDEMGLDRLDRAVLNALINGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVRAGMISRT 310 Query: 314 PRGRLLMPIAWQHLGIDIP 332 RGR+ AWQHLG+ P Sbjct: 311 GRGRVATAAAWQHLGLTPP 329 >gi|315604283|ref|ZP_07879349.1| crossover junction ATP-dependent DNA helicase RuvB [Actinomyces sp. oral taxon 180 str. F0310] gi|315313989|gb|EFU62040.1| crossover junction ATP-dependent DNA helicase RuvB [Actinomyces sp. oral taxon 180 str. F0310] Length = 348 Score = 318 bits (816), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 160/318 (50%), Positives = 215/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A + LRPR L EF GQ L++ ++AA+ R+ DHVL GPPGLGKTTLA ++ Sbjct: 23 ERAAEAALRPRKLSEFVGQRVVRGQLQLVLDAARMRSATPDHVLLAGPPGLGKTTLAMII 82 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+G + R TSGP I AGDLAA+L+ L++ D+LFIDEIHRL+ EE+LY AMEDF++ Sbjct: 83 AAEMGTSLRLTSGPAIQHAGDLAAILSGLQEGDILFIDEIHRLARTAEEMLYLAMEDFRV 142 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A S+ + L FT++ ATTR GLL PL+DRFG L FYE ++L+++V R Sbjct: 143 DVVVGKGPGATSIPLTLPPFTVVGATTRSGLLPAPLRDRFGFTAHLEFYETDELQSVVTR 202 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L G + AA EIA RSRGTPRIA RLLRRV D+A+V +T + A AL Sbjct: 203 SASLLGSPIDARAAHEIASRSRGTPRIANRLLRRVVDYAQVHGDGQLTLDAARGALELFE 262 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D+LD L + R F GGPVG+ T+S + E + +E + EPY++++GF+ RT Sbjct: 263 VDPSGLDRLDRAVLEAVCRRFAGGPVGLTTLSVTIGEEAETVETVAEPYLVREGFLVRTN 322 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ P+AW HLG+ P Sbjct: 323 RGRMATPLAWSHLGLTPP 340 >gi|302866773|ref|YP_003835410.1| Holliday junction DNA helicase RuvB [Micromonospora aurantiaca ATCC 27029] gi|315503188|ref|YP_004082075.1| holliday junction DNA helicase ruvb [Micromonospora sp. L5] gi|302569632|gb|ADL45834.1| Holliday junction DNA helicase RuvB [Micromonospora aurantiaca ATCC 27029] gi|315409807|gb|ADU07924.1| Holliday junction DNA helicase RuvB [Micromonospora sp. L5] Length = 354 Score = 318 bits (815), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 160/333 (48%), Positives = 224/333 (67%), Gaps = 1/333 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M E L+S V+ + D + +RP+ L+EF Q L + ++ A R DH+L Sbjct: 1 MSGENLVSAYVNDAELDAEASVRPKRLDEFIAQHRVRDQLDLLLQGAMRRGSPPDHILLS 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA +VA ELG R TSGP I ++GDLAA+LT L + DVLFIDEIHR++ Sbjct: 61 GPPGLGKTTLANIVAAELGTGIRVTSGPAIERSGDLAAILTGLAEGDVLFIDEIHRIAKP 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D++VG+GP A ++ +++ FTL+ ATTR GLLT P++DRFG L Sbjct: 121 AEELLYSAMEDFRVDVVVGKGPGATAIPLDVEPFTLVGATTRSGLLTGPMRDRFGFVAHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FY DL+T++ R A++ G+ +T + A E+A RSRGTPRIA RLLRRVRD+AEV Sbjct: 181 DFYAPADLETLLHRSARILGVPITADGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGV 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T E A AAL +D +G D+LD LT + +F GGPVG+ T++ + E D +E++ Sbjct: 241 VTLETARAALTVYDVDALGLDRLDRAVLTALVDSFRGGPVGLSTLAVAVGEQPDTVEEVC 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 EP++++ G + RTPRGR+ AW+HLG P+ Sbjct: 301 EPFLVRAGLLARTPRGRVATEAAWRHLGRTPPN 333 >gi|145594354|ref|YP_001158651.1| Holliday junction DNA helicase RuvB [Salinispora tropica CNB-440] gi|189046047|sp|A4X5X3|RUVB_SALTO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|145303691|gb|ABP54273.1| Holliday junction DNA helicase RuvB [Salinispora tropica CNB-440] Length = 354 Score = 318 bits (815), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 159/328 (48%), Positives = 223/328 (67%), Gaps = 1/328 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M + L+S VS + D+ + +RPR L EF Q L + ++ A R DH+L Sbjct: 1 MTGDNLVSAYVSDAERDVEASVRPRRLAEFIAQERVRDQLDLLLQGALRRGSPPDHILLS 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKT+LA +VA ELG + R TSGP I ++GDLAA+LT+L + DVLFIDE+HR++ Sbjct: 61 GPPGLGKTSLANIVAAELGTSIRVTSGPAIERSGDLAAILTSLGEGDVLFIDEVHRIARP 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D++VG+GP A ++ +++ FTL+ ATTR GLLT P++DRFG L Sbjct: 121 AEELLYSAMEDFRVDVVVGKGPGATAIPLDVEPFTLVGATTRAGLLTGPMRDRFGFVAHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FY DL+T++ R A++ G+ +T + A EI+ R+RGTPRIA RLLRRVRDFAEV Sbjct: 181 DFYSPADLETLLNRSARILGVPITADGAAEISGRARGTPRIANRLLRRVRDFAEVRADGV 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +TRE A AAL +D +G D+LD LT + F GGPVG+ T++ + E D +E++ Sbjct: 241 VTRETAQAALTVYDVDALGLDRLDRAVLTALVDLFRGGPVGLSTLAVAVGEQPDTVEEVC 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EP++++ G + RTPRGR+ AW HLG Sbjct: 301 EPFLVRAGLLARTPRGRVATEAAWHHLG 328 >gi|152966997|ref|YP_001362781.1| Holliday junction DNA helicase RuvB [Kineococcus radiotolerans SRS30216] gi|151361514|gb|ABS04517.1| Holliday junction DNA helicase RuvB [Kineococcus radiotolerans SRS30216] Length = 355 Score = 318 bits (815), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 159/319 (49%), Positives = 220/319 (68%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E A S LRP L+EF GQ L + ++AAKAR DHVLF GPPGLGKTTLA + Sbjct: 13 RERAAESALRPHGLDEFVGQKVVREQLALVLDAAKARGMPSDHVLFSGPPGLGKTTLAMI 72 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+G R +SGP I AGDLAA+L++L++ +VLF+DEIHR++ EE+LY AMED++ Sbjct: 73 VASEMGAPLRQSSGPAIQHAGDLAAVLSSLDEGEVLFLDEIHRMARPAEEMLYIAMEDYR 132 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D++VG+GP A ++ + L +FTL+ ATTR GLL PL+DRFG L+FY E+L +++ Sbjct: 133 VDVVVGKGPGATAIPLELPKFTLVGATTRAGLLPAPLRDRFGFTGYLDFYTPEELVKVLR 192 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L G+ +T E A EI RSRGTPRIA RLLRRVRD+A+V + + R A AAL Sbjct: 193 RSASLLGVQLTAEGAAEIGGRSRGTPRIANRLLRRVRDWAQVRGSGIVDRHAARAALEVY 252 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D+ G D+LD L + R FGGGPVG+ T++ + E + +E + EP+++++G + RT Sbjct: 253 EVDERGLDRLDRAVLDALCRRFGGGPVGLSTLAVVVGEEAETVETVAEPFLVREGLLGRT 312 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ +P W HLG+ P Sbjct: 313 PRGRIALPDTWAHLGLTPP 331 >gi|86607928|ref|YP_476690.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-2-3B'a(2-13)] gi|97190388|sp|Q2JP68|RUVB_SYNJB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|86556470|gb|ABD01427.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-2-3B'a(2-13)] Length = 378 Score = 318 bits (815), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 170/328 (51%), Positives = 220/328 (67%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 D LL +A LRPRTL E+ GQ E L + I AA+AR E LDH+LF GP Sbjct: 42 DPSALLQPQAHPGEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARQEPLDHLLFYGP 101 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTT+A V+A E+G F T+ P + D+A L L+ DVLFIDEIHRL + E Sbjct: 102 PGLGKTTVAAVLAAEMGSQFYMTTAPALESPRDIAGYLVRLKRGDVLFIDEIHRLPKVTE 161 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LYPAMEDF+LD+ +G+G SAR + L RFTLI ATTR+G LT+PL+DRFG RL F Sbjct: 162 ELLYPAMEDFRLDITIGKGRSARITSLPLERFTLIGATTRIGALTSPLRDRFGHVQRLRF 221 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE +L IV R A+L ++ E A EIA RSRGTPRIA RL +RVRD+A+V I+ Sbjct: 222 YEPHELVQIVLRTARLLNVSTDPEGAAEIARRSRGTPRIANRLFKRVRDYAQVRGDGHIS 281 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 +E+A AAL +D MG D +D + LT++ FGGGPVG+ET++A E IE++ EP Sbjct: 282 QEVAAAALELFQVDPMGLDWIDRKLLTVLVEQFGGGPVGLETMAAVTGEDPQTIEEVYEP 341 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330 Y++Q G++QRTPRGR++ P A +HLG + Sbjct: 342 YLLQIGYLQRTPRGRVVTPAALRHLGYE 369 >gi|110597058|ref|ZP_01385347.1| Holliday junction DNA helicase RuvB [Chlorobium ferrooxidans DSM 13031] gi|110341249|gb|EAT59714.1| Holliday junction DNA helicase RuvB [Chlorobium ferrooxidans DSM 13031] Length = 351 Score = 318 bits (815), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 160/297 (53%), Positives = 210/297 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + +F GQ NLKVFI AAK R +ALDHVL GPPGLGKTTLA ++A E+G + Sbjct: 32 IRPLRMGDFAGQQRLTDNLKVFISAAKIRGDALDHVLLSGPPGLGKTTLAYIIASEMGGS 91 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++TSGP++ KAG+LA LLT L+ DVLFIDEIHR+ VEE LY AMEDF++D+M+ G Sbjct: 92 IKATSGPLLDKAGNLAGLLTGLQKGDVLFIDEIHRMPPAVEEYLYSAMEDFRIDIMLDSG 151 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR+V++ + FTLI ATTR GLLT+PL+ RFGI R ++Y E L+ I+ R + + G+ Sbjct: 152 PSARAVQLRIEPFTLIGATTRSGLLTSPLRARFGINSRFDYYSPELLEKIIVRASGILGI 211 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA EIA RSRGTPRIA RLLRR RDFA+V I R IA L L ID+ G D Sbjct: 212 GIDGEAAKEIAGRSRGTPRIANRLLRRARDFAQVDSEALINRAIAMKTLECLEIDEEGLD 271 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318 +D + + I F GGPVGI +++ + E ++ IE++ EPY+IQ G++ RTPRGR+ Sbjct: 272 DMDKKIMETIVNKFNGGPVGIASLAVSVGEEQNTIEEVYEPYLIQAGYLTRTPRGRV 328 >gi|86606465|ref|YP_475228.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-3-3Ab] gi|97189884|sp|Q2JTM7|RUVB1_SYNJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB 1 gi|86555007|gb|ABC99965.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-3-3Ab] Length = 378 Score = 318 bits (815), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 170/328 (51%), Positives = 220/328 (67%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 D LL +A LRPRTL E+ GQ E L + I AA+AR E LDH+LF GP Sbjct: 42 DPSALLQPQAHPGEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARQEPLDHLLFYGP 101 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTT+A V+A E+G F T+ P + D+A L L+ DVLFIDEIHRL + E Sbjct: 102 PGLGKTTVAAVLAAEMGSQFYMTTAPALESPRDIAGYLVRLKRGDVLFIDEIHRLPKVTE 161 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LYPAMEDF+LD+ +G+G SAR + L RFTLI ATTR+G LT+PL+DRFG RL F Sbjct: 162 ELLYPAMEDFRLDITIGKGRSARITSLPLERFTLIGATTRIGALTSPLRDRFGHVQRLRF 221 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE +L IV R A+L ++ E A EIA RSRGTPRIA RL +RVRD+A+V I+ Sbjct: 222 YEPHELVQIVLRTARLLNVSTDPEGAAEIARRSRGTPRIANRLFKRVRDYAQVRGDGHIS 281 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 +E+A AAL +D MG D +D + LT++ FGGGPVG+ET++A E IE++ EP Sbjct: 282 QEVAAAALELFQVDPMGLDWIDRKLLTVLVEQFGGGPVGLETMAAVTGEDPQTIEEVYEP 341 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330 Y++Q G++QRTPRGR++ P A +HLG + Sbjct: 342 YLLQIGYLQRTPRGRVVTPAALRHLGYE 369 >gi|119511346|ref|ZP_01630459.1| Holliday junction DNA helicase RuvB [Nodularia spumigena CCY9414] gi|119463968|gb|EAW44892.1| Holliday junction DNA helicase RuvB [Nodularia spumigena CCY9414] Length = 367 Score = 318 bits (814), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 154/312 (49%), Positives = 215/312 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ ++ GQ + L + I+AAK+R E LDH+L GPPGLGKTT+A ++A E+GV+ Sbjct: 50 IRPQQFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASEMGVD 109 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 ++ TS P + + D+ LL NL+ DVLF+DEIHRLS + EEILYPAMED++LD+ VG+G Sbjct: 110 YKITSAPALERPRDIVGLLVNLKPGDVLFVDEIHRLSRMTEEILYPAMEDYRLDITVGKG 169 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 AR I L++FTL+ ATTRVG L++PL+DRFG+ +L FYE+++L IV R A Sbjct: 170 AGARIRSIPLNKFTLVGATTRVGALSSPLRDRFGLVQKLRFYEVDELTKIVLRSADFLKT 229 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++ A EIA R+RGTPRIA RLL+RVRD+AEV + IT +A AL +D G D Sbjct: 230 PIAEDGATEIARRARGTPRIANRLLKRVRDYAEVKLSGEITEIVASEALQLFQVDPCGLD 289 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L++I F GGPVG+ET++A E IE++ EPY++Q G++ RTPRGR+ Sbjct: 290 WTDRRMLSVIIEQFNGGPVGLETVAAATGEDTQTIEEVYEPYLMQIGYLSRTPRGRIATT 349 Query: 322 IAWQHLGIDIPH 333 A++HLG P+ Sbjct: 350 SAYKHLGFKPPN 361 >gi|260903851|ref|ZP_05912173.1| Holliday junction DNA helicase RuvB [Brevibacterium linens BL2] Length = 360 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 156/322 (48%), Positives = 223/322 (69%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 ++ DA+ +L RP+ L++F GQ + L + ++AAKAR A DHVL GPPGLGKTTL Sbjct: 35 ETAERDAEAAL-RPKGLQDFIGQPQVREQLSLVLDAAKARNRAPDHVLLSGPPGLGKTTL 93 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+ + R TSGP + AGDLAA+L++LE+ +VLFIDEIHR++ EE+LY AME Sbjct: 94 AMIIAHEMQSSLRVTSGPAVQHAGDLAAILSSLEEGEVLFIDEIHRMARAAEEMLYVAME 153 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF++D++VG+GP A ++ ++L +FT++ ATTR GLL PL+DRFG L+FY DL T Sbjct: 154 DFRVDVIVGKGPGATAIPLDLPQFTMVGATTRSGLLPAPLRDRFGFTGLLDFYSSNDLLT 213 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 +++R A + G+ EI+ RSRGTPR+A RLLRRVRD+A+V I A +AL Sbjct: 214 VLKRSAHMLGIEAELAGLKEISTRSRGTPRVANRLLRRVRDWAQVRGTGIIDEAAALSAL 273 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +D++G D+LD L ++ + FGGGPVG+ TI+ + E D +E + EPY++++G I Sbjct: 274 KVYEVDELGLDRLDRSVLQVLCKRFGGGPVGLGTIAVSVGEEADTVETVSEPYLVREGLI 333 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 RTPRGR+ AW+HLG+ IP Sbjct: 334 SRTPRGRVATSAAWKHLGMQIP 355 >gi|58697554|ref|ZP_00372791.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of Drosophila simulans] gi|58535961|gb|EAL59691.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of Drosophila simulans] Length = 264 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 152/246 (61%), Positives = 197/246 (80%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L++F GQ + NLKVFI AA+ R EALDHVL GPPGLGKTTLAQ+V++EL V+ Sbjct: 19 IRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIVSKELRVS 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR+TSGP+++KAGDLAA+LT L +DVLFIDEIHRL+ +EE+LY AMEDF LD++VGEG Sbjct: 79 FRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDILVGEG 138 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PS R+++I+L FTLI ATTR+GLL+ PL+DRFGIP+ L FY E+L I++RGA++ Sbjct: 139 PSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKRGARVLSA 198 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA EIA R+RGTPRIA RLLRR+RDF EV K IT E+AD+ LL+L +DKMG + Sbjct: 199 EIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLGVDKMGLN 258 Query: 262 QLDLRY 267 +LD+ Y Sbjct: 259 KLDMNY 264 >gi|222099902|ref|YP_002534470.1| Holliday junction ATP-dependent DNA helicase ruvB [Thermotoga neapolitana DSM 4359] gi|221572292|gb|ACM23104.1| Holliday junction ATP-dependent DNA helicase ruvB [Thermotoga neapolitana DSM 4359] Length = 358 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 163/327 (49%), Positives = 224/327 (68%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 LS + D+ + LRP++L+EF GQ + L + ++AAK R E LDH+L GPPGLG Sbjct: 28 FLSPERTVYDSGVQFLRPKSLDEFIGQEKVKRKLSLALKAAKMRGEILDHILLAGPPGLG 87 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A E+ N TSGPV+AK GD+AA+LT+LE DVLFIDEIHRL+ VEE+LY Sbjct: 88 KTTLAHIIASEMQTNIHITSGPVLAKQGDMAAILTSLERGDVLFIDEIHRLNKAVEEVLY 147 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 A+EDFQ+D+M+G+GPSA+S++I++ FTL+ ATTR GLL++PL+ RFG+ + L+FY E Sbjct: 148 SAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGMILELDFYTTE 207 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +LK IV+R A+L + + +EAA IA RSRGTPRIA RL +RVRD V A I I Sbjct: 208 ELKEIVKRAARLMDVEIEEEAAEMIAKRSRGTPRIAIRLTKRVRDMLTVEGADRIDIRIV 267 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 + L ID+ G D+ D + L I + GGPVG+ ++A L D + ++ EPY++Q Sbjct: 268 QKTMEILNIDEEGLDEFDRKILKTIIEVYRGGPVGLNALAASLGVEADTLSEVYEPYLLQ 327 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333 GFI RTPRGR+ A++HL + P Sbjct: 328 SGFIARTPRGRIATKKAYEHLKYEFPE 354 >gi|15639155|ref|NP_218601.1| Holliday junction DNA helicase RuvB [Treponema pallidum subsp. pallidum str. Nichols] gi|189025395|ref|YP_001933167.1| Holliday junction DNA helicase RuvB [Treponema pallidum subsp. pallidum SS14] gi|6174969|sp|P96115|RUVB_TREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|3322427|gb|AAC65150.1| Holliday junction DNA helicase (ruvB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017970|gb|ACD70588.1| Holliday junction DNA helicase, subunit B [Treponema pallidum subsp. pallidum SS14] Length = 350 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 160/311 (51%), Positives = 217/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L++F GQ + NL++FI+AA+ R E+LDH+ +GPPGLGKTTLA + A ELGV Sbjct: 24 LRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLIGPPGLGKTTLAHITACELGVE 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T P + K DLA +LT L +R V F+DEIHRL +EE+LY AMED++LD ++G+G Sbjct: 84 CKVTGAPALDKPKDLAGILTALSERSVFFVDEIHRLKPAIEEMLYIAMEDYELDWVIGQG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR+V+I L FTLI ATTR G++++PL RFGI R FY E+L IVQR A+L + Sbjct: 144 PSARTVRIPLPPFTLIGATTRAGMVSSPLISRFGIVERFEFYTPEELAAIVQRSARLLDI 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + AA +A SRGTPR+A RLLRR+RDFA+VA + I+ I A L L ID++G + Sbjct: 204 TLDARAALALARCSRGTPRVANRLLRRIRDFAQVAGSAHISETIVRAGLAHLKIDELGLE 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D++ L ++ +FGGGPVG ET++ L E + +ED EPY+IQ G +QRTPRGR+ Sbjct: 264 LHDIQLLRVMIEHFGGGPVGAETLAISLGESPETLEDYYEPYLIQIGLMQRTPRGRMATA 323 Query: 322 IAWQHLGIDIP 332 A+ HLG+ +P Sbjct: 324 RAYAHLGLPVP 334 >gi|302527850|ref|ZP_07280192.1| Holliday junction DNA helicase RuvB [Streptomyces sp. AA4] gi|302436745|gb|EFL08561.1| Holliday junction DNA helicase RuvB [Streptomyces sp. AA4] Length = 358 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 215/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L+EF GQ L++ +E+A+ R DHVL GPPGLGKT++A +VA ELG Sbjct: 31 LRPRKLDEFVGQERVREQLELVLESARRRDVPPDHVLLSGPPGLGKTSMAMIVAAELGAA 90 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP + +AGDLAA+L+NL DVLFIDEIHR++ EE+LY AMEDF++D++VG+G Sbjct: 91 IRITSGPALERAGDLAAMLSNLAPGDVLFIDEIHRIARPAEEMLYLAMEDFRVDVVVGKG 150 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + ++ FTL+ ATTR G LT PL+DRFG ++ FY +L+ +V+R A + G+ Sbjct: 151 PGATSIPLEIAPFTLVGATTRSGSLTGPLRDRFGFTGQMEFYSAAELELVVRRAATILGI 210 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + EIA RSRGTPRIA RLLRRVRD+AEV +T E+A AAL +D++G D Sbjct: 211 EIDRDGCAEIAGRSRGTPRIANRLLRRVRDYAEVRADGKVTLEVAQAALKVYDVDELGLD 270 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + R+FGGGPVGI T++ + E +E++ EPY+++ G + RTPRGR+ Sbjct: 271 RLDRAVLGALTRSFGGGPVGISTLAVAVGEEATTVEEVCEPYLVRAGMLARTPRGRVATA 330 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 331 AAWHHLGLVPP 341 >gi|282855629|ref|ZP_06264943.1| holliday junction DNA helicase RuvB [Pyramidobacter piscolens W5455] gi|282586559|gb|EFB91813.1| holliday junction DNA helicase RuvB [Pyramidobacter piscolens W5455] Length = 347 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 172/320 (53%), Positives = 222/320 (69%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E D LRP L +F GQ E S L+V+I+AAK R EALDH+LF GPPGLGKTTLA + Sbjct: 19 KEREDERGLRPLRLSDFNGQTEIKSKLEVYIQAAKKREEALDHLLFYGPPGLGKTTLAGI 78 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+ R T+GP + K GDLAA+L+NL+D DVLFIDEIHR+S +EE+LY AMEDF Sbjct: 79 IAHEMNSELRVTTGPALEKPGDLAAILSNLQDHDVLFIDEIHRMSTTIEEVLYSAMEDFT 138 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L ++VG+GP ARS+ +NL FTL+ ATTR+GLL+ PL+ RFGI +L Y E+L I+ Sbjct: 139 LHIIVGKGPLARSICLNLPHFTLVGATTRLGLLSAPLRARFGIVEQLRLYTPEELCVILD 198 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 RGA + + V +A IA RSRGTPRIA RLLRRVRDFAEVA T+ +A+ A+ L Sbjct: 199 RGAGVMNMKVEPDARRAIANRSRGTPRIALRLLRRVRDFAEVAGVPTVEAALAERAMDTL 258 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +G D D + L I F GGPVG+ T++A L+E IED+ EPY+IQ+G I+RT Sbjct: 259 GLDGLGLDDGDRKILDAIVSLFDGGPVGLSTLAAALNEEPQTIEDIYEPYLIQKGMIERT 318 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 PRGR A+++LG P Sbjct: 319 PRGRKATENAYRYLGKTPPQ 338 >gi|291059577|gb|ADD72312.1| Holliday junction DNA helicase RuvB [Treponema pallidum subsp. pallidum str. Chicago] Length = 354 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 160/311 (51%), Positives = 217/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L++F GQ + NL++FI+AA+ R E+LDH+ +GPPGLGKTTLA + A ELGV Sbjct: 28 LRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLIGPPGLGKTTLAHITACELGVE 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T P + K DLA +LT L +R V F+DEIHRL +EE+LY AMED++LD ++G+G Sbjct: 88 CKVTGAPALDKPKDLAGILTALSERSVFFVDEIHRLKPAIEEMLYIAMEDYELDWVIGQG 147 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR+V+I L FTLI ATTR G++++PL RFGI R FY E+L IVQR A+L + Sbjct: 148 PSARTVRIPLPPFTLIGATTRAGMVSSPLISRFGIVERFEFYTPEELAAIVQRSARLLDI 207 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + AA +A SRGTPR+A RLLRR+RDFA+VA + I+ I A L L ID++G + Sbjct: 208 TLDARAALALARCSRGTPRVANRLLRRIRDFAQVAGSAHISETIVRAGLAHLKIDELGLE 267 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D++ L ++ +FGGGPVG ET++ L E + +ED EPY+IQ G +QRTPRGR+ Sbjct: 268 LHDIQLLRVMIEHFGGGPVGAETLAISLGESPETLEDYYEPYLIQIGLMQRTPRGRMATA 327 Query: 322 IAWQHLGIDIP 332 A+ HLG+ +P Sbjct: 328 RAYAHLGLPVP 338 >gi|300781060|ref|ZP_07090914.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium genitalium ATCC 33030] gi|300532767|gb|EFK53828.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium genitalium ATCC 33030] Length = 358 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 152/311 (48%), Positives = 217/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++++EF GQ + L + +E AK R DH+L GPPGLGKTT+A +VA+ELG + Sbjct: 38 LRPKSIDEFIGQPKVRQQLGLVLEGAKKRNVVPDHILLSGPPGLGKTTMAMIVAQELGTS 97 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF++D++VG+G Sbjct: 98 LRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFRIDVIVGKG 157 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ +++ FTL+ ATTR G+LT PL+DRFG ++ FY+++DL ++ R A + G+ Sbjct: 158 PGATSIPLDIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDVDDLTRVITRAASILGV 217 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EI RSRGTPRIA RLLRRVRD+AEV +T E A AL +D++G D Sbjct: 218 DIDRDAAVEIGSRSRGTPRIANRLLRRVRDWAEVNGDGRVTVEAAQQALEVFDVDELGLD 277 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + ++ GGGPVG+ T++ + E +E++ EPY+++ G + RT RGR+ Sbjct: 278 RLDRAVLETLIKSHGGGPVGVSTLAIAVGEEPSTVEEVCEPYLVRAGLMARTGRGRVATA 337 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 338 SAWHHLGMTPP 348 >gi|183601647|ref|ZP_02963017.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp. lactis HN019] gi|219683819|ref|YP_002470202.1| Holliday junction DNA helicase RuvB [Bifidobacterium animalis subsp. lactis AD011] gi|241190855|ref|YP_002968249.1| Holliday junction DNA helicase RuvB [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196261|ref|YP_002969816.1| Holliday junction DNA helicase RuvB [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219253|gb|EDT89894.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp. lactis HN019] gi|219621469|gb|ACL29626.1| Holliday junction DNA helicase RuvB [Bifidobacterium animalis subsp. lactis AD011] gi|240249247|gb|ACS46187.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250815|gb|ACS47754.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793844|gb|ADG33379.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp. lactis V9] Length = 355 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 160/318 (50%), Positives = 218/318 (68%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V E LRP LE F GQ + L++F++AA+ R A DH+L GPPGLGKTTLA Sbjct: 24 VGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVAPDHILMAGPPGLGKTTLA 83 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA ELGV R TSGP I AGDLA++L++L+ +VLFIDEIHRL EE+LY AMED Sbjct: 84 MIVANELGVPIRVTSGPAIQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIAMED 143 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY E+L+ + Sbjct: 144 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 203 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R A + GL + D+AA ++++RSRGTPRIA RLLRRVRD+A V ++ + AL Sbjct: 204 IERSASVLGLPLEDQAARQLSLRSRGTPRIANRLLRRVRDWAIVHDLDSVGADDVKDALA 263 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 ID G D+LD+ L I R F GGPVG+ +SA + E + +E + EPY++++GF+ Sbjct: 264 LYQIDSEGLDRLDIAVLNAIVRQFNGGPVGLNNLSAMVGEEAETVETVCEPYLVREGFLI 323 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTP+GRL AW+HLG+ Sbjct: 324 RTPKGRLATAKAWEHLGL 341 >gi|289178594|gb|ADC85840.1| RuvB [Bifidobacterium animalis subsp. lactis BB-12] Length = 363 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 160/318 (50%), Positives = 218/318 (68%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V E LRP LE F GQ + L++F++AA+ R A DH+L GPPGLGKTTLA Sbjct: 32 VGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVAPDHILMAGPPGLGKTTLA 91 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA ELGV R TSGP I AGDLA++L++L+ +VLFIDEIHRL EE+LY AMED Sbjct: 92 MIVANELGVPIRVTSGPAIQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIAMED 151 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY E+L+ + Sbjct: 152 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 211 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R A + GL + D+AA ++++RSRGTPRIA RLLRRVRD+A V ++ + AL Sbjct: 212 IERSASVLGLPLEDQAARQLSLRSRGTPRIANRLLRRVRDWAIVHDLDSVGADDVKDALA 271 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 ID G D+LD+ L I R F GGPVG+ +SA + E + +E + EPY++++GF+ Sbjct: 272 LYQIDSEGLDRLDIAVLNAIVRQFNGGPVGLNNLSAMVGEEAETVETVCEPYLVREGFLI 331 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTP+GRL AW+HLG+ Sbjct: 332 RTPKGRLATAKAWEHLGL 349 >gi|91203073|emb|CAJ72712.1| strongly similar to RuvB ATPase [Candidatus Kuenenia stuttgartiensis] Length = 354 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 161/332 (48%), Positives = 226/332 (68%), Gaps = 5/332 (1%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M EG+LS + + ED+++ L LRP+ +F GQ NL ++I+AAK R E +DHVLF Sbjct: 12 MLNEGVLSSSAAIEDSNLDLTLRPKRFNDFIGQDRIKENLHIYIKAAKKRGEPIDHVLFS 71 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+Q++A E R+TSGP++ K DLA +LTNL+ ++LFIDEIHRL+ Sbjct: 72 GPPGLGKTTLSQIIASETNTAIRTTSGPILDKPADLAGILTNLQQGEILFIDEIHRLNTN 131 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE LY AMEDF +D+++ +G ARSVKINL RFTLI ATTR GLLT PL+ RFG+ +L Sbjct: 132 VEEYLYSAMEDFSIDIIIDQGQKARSVKINLQRFTLIGATTREGLLTAPLRSRFGVLEKL 191 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA---H 237 FY EDL IV A+ + + + A IA RSRGTPRIA R LRR+RD A+V Sbjct: 192 EFYPWEDLYKIVCNSARKLAIPIEVKGAEAIAKRSRGTPRIANRFLRRIRDVAQVLGEDG 251 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 I +IA L L +D+ G ++D + L + ++ GGGP+G++TI+ ++E D IE Sbjct: 252 KDVIDEKIALRGLEMLGVDENGLCEMDRKILQTVVKS-GGGPIGLKTIAVSVNEQEDTIE 310 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 ++ E ++IQ+G++++TPRGR+ ++HLG+ Sbjct: 311 EVYESFLIQRGYLEKTPRGRIATKQTYEHLGV 342 >gi|282901137|ref|ZP_06309068.1| Holliday junction DNA helicase RuvB [Cylindrospermopsis raciborskii CS-505] gi|281193969|gb|EFA68935.1| Holliday junction DNA helicase RuvB [Cylindrospermopsis raciborskii CS-505] Length = 370 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 157/321 (48%), Positives = 217/321 (67%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 V ++D +RP+ ++ GQ + L + I+AAK+R + +DH+L GP GLGKTT+ Sbjct: 43 TVGEDDKQEERIRPQRFADYIGQQDLKDVLDIAIKAAKSRGDVMDHLLLYGPAGLGKTTM 102 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A E+GVN++ TS P + + D+ LL NL+ DVLFIDEIHRLS + EEILYPAME Sbjct: 103 AMILASEMGVNYKITSAPALERPRDIVGLLVNLKAGDVLFIDEIHRLSRMTEEILYPAME 162 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D++LD+ +G+G A+ I LS+FTL+ ATTRVG LT+PL+DRFG+ +L FY++E+L Sbjct: 163 DYRLDVTIGKGSGAKVRTIPLSKFTLVGATTRVGALTSPLRDRFGLVQKLRFYQVEELSQ 222 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R A++ V E A EIA RSRGTPRIA RLL+RVRD+A V I + A AL Sbjct: 223 IVLRSAEVLQTIVNLEGATEIAKRSRGTPRIANRLLKRVRDYAIVKSRPQIDQPTAAEAL 282 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +D G D D + LT+I NF GGPVG+ET++A E IE++ EPY++Q G++ Sbjct: 283 TLFQVDPCGLDWTDRKMLTVIIENFHGGPVGLETLAAATGEDTQTIEEVYEPYLMQIGYL 342 Query: 311 QRTPRGRLLMPIAWQHLGIDI 331 RTPRGR++ A+QHLG + Sbjct: 343 SRTPRGRVVTSAAYQHLGFQL 363 >gi|308235710|ref|ZP_07666447.1| Holliday junction DNA helicase RuvB [Gardnerella vaginalis ATCC 14018] gi|311114740|ref|YP_003985961.1| crossover junction ATP-dependent DNA helicase RuvB [Gardnerella vaginalis ATCC 14019] gi|310946234|gb|ADP38938.1| crossover junction ATP-dependent DNA helicase RuvB [Gardnerella vaginalis ATCC 14019] Length = 353 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 158/324 (48%), Positives = 221/324 (68%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S + E LRP L+ F GQ + L++F++AA+ R DH+L GPPGLGKT Sbjct: 26 SSPIGNEQISDEELRPHALDGFIGQPLLKAQLQLFLDAARLRDVPPDHMLLAGPPGLGKT 85 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VA ELGV+ R TSGP I AGDLA++L++L+ +VLFIDEIHRL EE+LY A Sbjct: 86 TLAMIVANELGVSIRVTSGPAIQHAGDLASILSSLDTGEVLFIDEIHRLPRAAEELLYIA 145 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDF++D+MVG+GP A S+ + L FT++ ATTR G+L +PL+ RFG L+FY ++L Sbjct: 146 MEDFRVDVMVGKGPGASSIPLTLPHFTVVGATTREGMLPSPLRARFGFTAHLDFYPHDEL 205 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + +++R + L G+ + D+AA E+A+RSRGTPRIA RLLRRVRD+A V + K + RE Sbjct: 206 EKLIERSSVLLGVHLVDQAAKELAIRSRGTPRIANRLLRRVRDWAVVHNLKDVNRESVIE 265 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL ID G D+LD+ L I +F GGPVG+ ++A + E + +E + EPY++++G Sbjct: 266 ALSLYQIDTQGLDRLDIAVLKAIVNHFNGGPVGLNNLAAMVGEEAETVETVCEPYLVREG 325 Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332 F+ RTP+GR+ AWQHLG+ P Sbjct: 326 FLIRTPKGRVATEKAWQHLGLKAP 349 >gi|67924049|ref|ZP_00517499.1| Holliday junction DNA helicase RuvB [Crocosphaera watsonii WH 8501] gi|67854116|gb|EAM49425.1| Holliday junction DNA helicase RuvB [Crocosphaera watsonii WH 8501] Length = 354 Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 155/320 (48%), Positives = 222/320 (69%), Gaps = 1/320 (0%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 +N Q++ + S+ RP + +E+ GQ + L + IEAAK R E +DH+L GPPGLGKT Sbjct: 23 KKNQVQDNLEESI-RPHSFDEYIGQKDLKDVLSIVIEAAKTRNEPIDHLLLYGPPGLGKT 81 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 T++ ++A ++ VN + T+ P + + D+ LL NL+ D+LFIDEIHRL+ + EE+LYPA Sbjct: 82 TISLILASQMEVNCKITAAPALERPRDITGLLVNLKPGDILFIDEIHRLNRLTEELLYPA 141 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MED++LD+ +G+G +AR+ I L +FTL+ ATT+VG LT+PL+DRFG+ RL FYE E+L Sbjct: 142 MEDYRLDITIGKGQAARTRSIPLPKFTLVGATTKVGALTSPLRDRFGLIQRLKFYEPEEL 201 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 I+QR AKL ++T+ + EI RSRGTPRIA RLLRRVRD+ +V ++IT+E+A Sbjct: 202 ALIIQRTAKLLNTSITEPGSLEIGRRSRGTPRIANRLLRRVRDYIQVKKFESITQELAAE 261 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL +D G D D L + + F GGPVG+E I+A E IE++ EPY++Q G Sbjct: 262 ALDIYQVDPQGLDWTDRLILETMIKQFNGGPVGLEAIAAATGEDAKTIEEVYEPYLLQIG 321 Query: 309 FIQRTPRGRLLMPIAWQHLG 328 ++ RTPRGR++ IA+QHLG Sbjct: 322 YLNRTPRGRVVTAIAYQHLG 341 >gi|154508893|ref|ZP_02044535.1| hypothetical protein ACTODO_01404 [Actinomyces odontolyticus ATCC 17982] gi|153798527|gb|EDN80947.1| hypothetical protein ACTODO_01404 [Actinomyces odontolyticus ATCC 17982] Length = 352 Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 161/318 (50%), Positives = 215/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A + LRP+ L EF GQ L++ ++AA+ R+ + DHVL GPPGLGKTTLA ++ Sbjct: 27 ERAAEAALRPKKLSEFVGQRVVRGQLQLVLDAARMRSASPDHVLLAGPPGLGKTTLAMII 86 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+G + R TSGP I AGDLAA+L+ L++ DVLFIDEIHRL+ EE+LY AMEDF++ Sbjct: 87 AAEMGTSLRLTSGPAIQHAGDLAAILSGLQEGDVLFIDEIHRLARTAEEMLYLAMEDFRV 146 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A S+ + L FT++ ATTR GLL PL+DRFG L FYE ++L+++V R Sbjct: 147 DVVVGKGPGATSIPLTLPPFTVVGATTRSGLLPAPLRDRFGFTAHLEFYETDELQSVVTR 206 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L G + +AA EIA RSRGTPRIA RLLRRV D+A+V +T E A AL Sbjct: 207 SASLLGSPIDAQAAHEIASRSRGTPRIANRLLRRVVDYAQVHGDGQLTLEAARGALELFE 266 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D+LD L I R F GGPVG+ T+S + E + +E + EPY++++GF+ RT Sbjct: 267 VDPSGLDRLDRAVLEAICRRFAGGPVGLTTLSVTIGEEAETVETVAEPYLVREGFLVRTN 326 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW HLG+ P Sbjct: 327 RGRMATAKAWAHLGLTPP 344 >gi|126657563|ref|ZP_01728719.1| Holliday junction DNA helicase RuvB [Cyanothece sp. CCY0110] gi|126621267|gb|EAZ91980.1| Holliday junction DNA helicase RuvB [Cyanothece sp. CCY0110] Length = 358 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 156/327 (47%), Positives = 224/327 (68%), Gaps = 1/327 (0%) Query: 3 DREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 DRE L + +Q+ ++ +RP + +E+ GQ + L + IEAAK R E +DH+L G Sbjct: 20 DRELLKTTQTTQDKDNLEESIRPHSFDEYIGQKDLKDVLSIVIEAAKTRNEPMDHLLLYG 79 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTT++ ++A E+GVN + T+ P + + D+ LL NL+ D+LFIDEIHRL+ + Sbjct: 80 PPGLGKTTISLILASEMGVNCKITAAPALERPRDITGLLVNLKPGDILFIDEIHRLNRLT 139 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LYPAMED++L++ +G+G +AR+ I L +FTL+ ATT+VG LT+PL+DRFG+ RL Sbjct: 140 EELLYPAMEDYRLEITIGKGQAARTRSIPLPKFTLVGATTKVGSLTSPLRDRFGLIQRLK 199 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY+ E+L I++R AKL ++T++ + EI RSRGTPRIA RLLRRVRD+ +V TI Sbjct: 200 FYDPEELALIIKRTAKLLNTSITEQGSQEIGRRSRGTPRIANRLLRRVRDYIQVKKFDTI 259 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T+E+A AL +D G D D L + F GGPVG+E ++A E IE++ E Sbjct: 260 TQELAAEALNIYQVDPQGLDWTDRLILETMITQFDGGPVGLEAVAAATGEDAKTIEEVYE 319 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328 PY++Q G+I RTPRGR++ A+QHLG Sbjct: 320 PYLLQIGYINRTPRGRVVTTAAYQHLG 346 >gi|293192653|ref|ZP_06609607.1| holliday junction DNA helicase RuvB [Actinomyces odontolyticus F0309] gi|292820160|gb|EFF79157.1| holliday junction DNA helicase RuvB [Actinomyces odontolyticus F0309] Length = 346 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 161/318 (50%), Positives = 215/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A + LRP+ L EF GQ L++ ++AA+ R+ + DHVL GPPGLGKTTLA ++ Sbjct: 21 ERAAEAALRPKKLSEFVGQRVVRGQLQLVLDAARMRSASPDHVLLAGPPGLGKTTLAMII 80 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+G + R TSGP I AGDLAA+L+ L++ DVLFIDEIHRL+ EE+LY AMEDF++ Sbjct: 81 AAEMGTSLRLTSGPAIQHAGDLAAILSGLQEGDVLFIDEIHRLARTAEEMLYLAMEDFRV 140 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A S+ + L FT++ ATTR GLL PL+DRFG L FYE ++L+++V R Sbjct: 141 DVVVGKGPGATSIPLTLPPFTVVGATTRSGLLPAPLRDRFGFTAHLEFYETDELQSVVTR 200 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L G + +AA EIA RSRGTPRIA RLLRRV D+A+V +T E A AL Sbjct: 201 SASLLGSPIDAQAAHEIASRSRGTPRIANRLLRRVVDYAQVHGDGQLTLEAARGALELFE 260 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D+LD L I R F GGPVG+ T+S + E + +E + EPY++++GF+ RT Sbjct: 261 VDPSGLDRLDRAVLEAICRRFAGGPVGLTTLSVTIGEEAETVETVAEPYLVREGFLVRTN 320 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW HLG+ P Sbjct: 321 RGRMATAKAWAHLGLTPP 338 >gi|297626359|ref|YP_003688122.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922124|emb|CBL56692.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 341 Score = 316 bits (809), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 155/311 (49%), Positives = 215/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP TLEEF GQ L + + AAK R DHVL GPPGLGKTTLA ++A E+GV Sbjct: 21 LRPSTLEEFEGQPRVSDQLGLVLSAAKHRGTTPDHVLLSGPPGLGKTTLAMIIASEMGVP 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGP I GDLAA+L+ L + +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 81 LHITSGPAIQHPGDLAAILSGLVEGEVLFLDEIHRMSRPAEEMLYLAMEDFRVDVVVGKG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ I + FTL+ ATTRVGLL +PL+DRFG L+FYE++DL++IV R + + G+ Sbjct: 141 PGATAIPIEIPAFTLVGATTRVGLLPSPLRDRFGFTGNLDFYEVDDLQSIVTRSSAMLGV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + +A EIA RSRGTPRIA RLLRRVRD+A+V + + + AAL +D +G D Sbjct: 201 GLDEASAHEIASRSRGTPRIANRLLRRVRDYAQVNNQGRVDLALTRAALELYEVDPLGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L I FGGGPVG+ T++ ++E + ++++ EP++++ GF+ RTPRGR+ Sbjct: 261 RLDRAVLEAICTKFGGGPVGLSTLAISVAEEAETVQEVAEPFLVRLGFLMRTPRGRVATE 320 Query: 322 IAWQHLGIDIP 332 W+HLG+ P Sbjct: 321 AGWRHLGLTPP 331 >gi|268679041|ref|YP_003303472.1| Holliday junction DNA helicase RuvB [Sulfurospirillum deleyianum DSM 6946] gi|268617072|gb|ACZ11437.1| Holliday junction DNA helicase RuvB [Sulfurospirillum deleyianum DSM 6946] Length = 340 Score = 316 bits (809), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 162/322 (50%), Positives = 229/322 (71%), Gaps = 1/322 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 VS E LRP + EE+ GQ + NL+VFI+AA R+E LDH+LF GPPGLGKTTL Sbjct: 9 KVSFESEYEKSLRPTSFEEYIGQEKIKKNLQVFIQAALKRSECLDHILFFGPPGLGKTTL 68 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A +V+ E+ N + T+ P+I K+GDLAA+LTNL++ D+LFIDEIHRLS +EEILYPAME Sbjct: 69 AYIVSNEMRANIKITAAPMIEKSGDLAAILTNLQEGDILFIDEIHRLSPAIEEILYPAME 128 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF+LD+++G GP+A+++KI+L FTLI ATTR G++++PL+DRFG+ RL FY E+L Sbjct: 129 DFRLDIIIGSGPAAQTIKIDLPHFTLIGATTRAGMISSPLRDRFGMHFRLQFYTKEELAL 188 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 I+ + + ++AA E+A RSRGTPRIA RLL+R+RD+A+V I +E A L Sbjct: 189 IITKASYKLEKRCLNDAAFEMARRSRGTPRIALRLLKRIRDYADVVDETEIYKERAQYGL 248 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 L ++ +GFD+LDL+YL ++ ++ G P+G+ TI+A LSE IED+IEPY++ +I Sbjct: 249 NELGVNDLGFDELDLKYLELLLQS-KGRPLGLSTIAAALSEDEGTIEDVIEPYLLANSYI 307 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 +RT RGR+ P ++ + P Sbjct: 308 ERTARGRIASPKTYELFRLTPP 329 >gi|302541120|ref|ZP_07293462.1| Holliday junction DNA helicase RuvB [Streptomyces hygroscopicus ATCC 53653] gi|302458738|gb|EFL21831.1| Holliday junction DNA helicase RuvB [Streptomyces himastatinicus ATCC 53653] Length = 353 Score = 316 bits (809), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 155/313 (49%), Positives = 215/313 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ L + ++AA+ R DHVL G PGLGKTTL+ ++A E+G Sbjct: 29 LRPKDLGEFVGQERVREQLDLVLKAARQRGGTADHVLLSGAPGLGKTTLSMIIAAEMGAP 88 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L++L + +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 89 IRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 148 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + L FTL+ ATTR GLL PL+DRFG + FY +L+ ++ R A+L + Sbjct: 149 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSARLLEV 208 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A EIA RSRGTPRIA RLLRRVRD+A+V ITREIA +AL +D G D Sbjct: 209 TIEPEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITREIAGSALAVYDVDGRGLD 268 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L+ + + FGGGPVG+ T++ + E R+ +E++ EP+++++G + RTPRGR+ P Sbjct: 269 RLDRAVLSALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRIGTP 328 Query: 322 IAWQHLGIDIPHR 334 AW+HLG+ P R Sbjct: 329 AAWEHLGLTPPQR 341 >gi|124026772|ref|YP_001015887.1| Holliday junction DNA helicase B [Prochlorococcus marinus str. NATL1A] gi|166231536|sp|A2C563|RUVB_PROM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|123961840|gb|ABM76623.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. NATL1A] Length = 356 Score = 315 bits (808), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 153/324 (47%), Positives = 227/324 (70%), Gaps = 5/324 (1%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +SQ+D+ LRP++ ++F GQ E L++ ++A+ R EALDH++ GPPGLGKTT+ Sbjct: 33 KLSQQDS----LRPKSFDDFVGQSELKKVLEISVKASLKRGEALDHLMLYGPPGLGKTTM 88 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A V+A ELGV R TS P + + D+ LL N++ R+++F+DEIHRL+ I +E+LYPAME Sbjct: 89 ALVIAEELGVKARVTSAPALERPRDIVGLLINMQPRELIFVDEIHRLNRISQELLYPAME 148 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D +LDL VG+G S+R I + FTL+ ATT+ L++P++DRFGI RL+FY DL+ Sbjct: 149 DRRLDLTVGKGTSSRMRSIEIPPFTLVGATTKPAALSSPMRDRFGITQRLDFYNYLDLEN 208 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAA 249 I++R AKL L +++EA+ ++A R RGTPRIA RL+RRVRD+AEV +H+K I E+ + A Sbjct: 209 IIKRSAKLINLVISEEASQQLAKRCRGTPRIANRLIRRVRDYAEVYSHSKKIDVEVVNDA 268 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L +D+ G D D Y+ ++ + GGPVG+ET++AGL E +E ++EPY++Q GF Sbjct: 269 LDLHRVDQRGLDATDRSYIGLLVNQYQGGPVGLETLAAGLGEDSTTLETVVEPYLMQIGF 328 Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333 +QRT RGR++ P A +H + P+ Sbjct: 329 LQRTSRGRVVTPAAKKHYLLTSPN 352 >gi|227833241|ref|YP_002834948.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|262184227|ref|ZP_06043648.1| Holliday junction DNA helicase RuvB [Corynebacterium aurimucosum ATCC 700975] gi|254767422|sp|C3PGQ6|RUVB_CORA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|227454257|gb|ACP33010.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC 700975] Length = 361 Score = 315 bits (808), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 153/312 (49%), Positives = 213/312 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L+EF GQ + L + + AK R DHVL GPPGLGKTT+A ++A+ELG + Sbjct: 42 LRPKSLDEFIGQPKVREQLSLVLNGAKNRGVTPDHVLLSGPPGLGKTTMAMIIAQELGSS 101 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF++D++VG+G Sbjct: 102 LRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFRIDVIVGKG 161 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + + FTL+ ATTR G+LT PL+DRFG ++ +Y+ EDL ++ R A++ + Sbjct: 162 PGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYDTEDLTRVISRAARILEV 221 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EI RSRGTPRIA RLLRRVRD+AEV I A AAL +D+ G D Sbjct: 222 DIDQDAAVEIGSRSRGTPRIANRLLRRVRDYAEVNGDGHIDVAAAQAALRVFDVDERGLD 281 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + + GGGPVG+ T++ + E +E++ EPY+++ G I RT RGR+ Sbjct: 282 RLDRAVLGALIKGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVRAGMISRTGRGRVATA 341 Query: 322 IAWQHLGIDIPH 333 AWQHLG++ P Sbjct: 342 AAWQHLGLEAPE 353 >gi|297195497|ref|ZP_06912895.1| Holliday junction DNA helicase B [Streptomyces pristinaespiralis ATCC 25486] gi|197722112|gb|EDY66020.1| Holliday junction DNA helicase B [Streptomyces pristinaespiralis ATCC 25486] Length = 356 Score = 315 bits (808), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 156/327 (47%), Positives = 222/327 (67%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L++ + ED+ + + LRPRTL+EF GQ L + + AA+ R DHVL G PGL Sbjct: 15 LVTPSADTEDSAVEAALRPRTLDEFVGQERVRQQLDLVLRAARQRGATADHVLLSGAPGL 74 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+ R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+L Sbjct: 75 GKTTLSMIIASEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 134 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FYE Sbjct: 135 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEP 194 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+ ++ R A+L + + + A EIA RSRGTPRIA RLLRRVRD+A+V + RE+ Sbjct: 195 VELERVIHRSAQLLDVEIDPDGAAEIAGRSRGTPRIANRLLRRVRDYAQVEADGRVDREV 254 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AAL +D G D+LD L + + FGGGPVG+ T++ + E R+ +E++ EP+++ Sbjct: 255 AAAALQVYEVDTRGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLV 314 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++G + RTPRGR+ P AW HLG+ P Sbjct: 315 REGLLARTPRGRVATPAAWAHLGLTPP 341 >gi|218780991|ref|YP_002432309.1| Holliday junction DNA helicase RuvB [Desulfatibacillum alkenivorans AK-01] gi|218762375|gb|ACL04841.1| Holliday junction DNA helicase RuvB [Desulfatibacillum alkenivorans AK-01] Length = 349 Score = 315 bits (808), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 160/308 (51%), Positives = 208/308 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+E+ GQ +A L++ IEAA AR EALDH LF GPPGLGKTTLA ++A ELG Sbjct: 33 LRPERLDEYIGQKDAVETLQIAIEAALARNEALDHTLFHGPPGLGKTTLAHIIANELGSR 92 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGP + K GDL LLT+LE++DVLF+DEIHRL VEE+LYPAMEDF +D + +G Sbjct: 93 LTVTSGPALEKGGDLLGLLTHLEEKDVLFVDEIHRLPKTVEELLYPAMEDFAVDFIFDKG 152 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ARS + L F L+ ATTRVGLL+ PL+DRFGI L+FYE DL I +R A L + Sbjct: 153 MHARSHRYRLKNFVLVGATTRVGLLSAPLRDRFGIFRNLDFYEEPDLIKIARRSALLLNV 212 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +E A E+A RSRGTPRI RLL+RVRD+A+V I ++ +L +D++G Sbjct: 213 EMDNEGALELARRSRGTPRIVNRLLKRVRDYAQVRSHGRIDKKTVSESLALEGVDEIGLT 272 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D RYL I +GGGPVGIE I+A + E D + D++EP++++ GF+ RT GR Sbjct: 273 NQDRRYLETIINFYGGGPVGIEAIAATIQEESDTLVDVVEPFLLKIGFLMRTSSGRKASE 332 Query: 322 IAWQHLGI 329 A++HLGI Sbjct: 333 AAYKHLGI 340 >gi|282896461|ref|ZP_06304481.1| Holliday junction DNA helicase RuvB [Raphidiopsis brookii D9] gi|281198567|gb|EFA73448.1| Holliday junction DNA helicase RuvB [Raphidiopsis brookii D9] Length = 328 Score = 315 bits (808), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 159/319 (49%), Positives = 217/319 (68%), Gaps = 4/319 (1%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 QED+ +RPR ++ GQ + L + I+AAK+R + +DH+L GP GLGKTT+A Sbjct: 6 KQEDS----IRPRRFADYIGQQDLKDVLDIAIKAAKSRGDVMDHLLLYGPAGLGKTTMAM 61 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+GVN++ TS P + + D+ LL NL+ DVLFIDEIHRLS + EEILYPAMED+ Sbjct: 62 ILASEMGVNYKITSAPALERPRDIVGLLVNLKPGDVLFIDEIHRLSRMTEEILYPAMEDY 121 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+ +G+G A+ I LS+FTL+ ATTRVG LT+PL+DRFG+ +L FY++E+L IV Sbjct: 122 RLDVTIGKGSGAKVRTIPLSKFTLVGATTRVGALTSPLRDRFGLVQKLRFYQVEELSQIV 181 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A++ V E A EIA RSRGTPRIA RLL+RVRD+A V I + A AL Sbjct: 182 LRSAEVLQTIVNLEGAREIAKRSRGTPRIANRLLKRVRDYAIVKSRPQIDQPTAAEALTL 241 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 +D G D D + LT+I NF GGPVG+ET++A E IE++ EPY++Q G++ R Sbjct: 242 FQVDPCGLDWTDRKMLTVIIENFHGGPVGLETLAAATGEDTQTIEEVYEPYLMQIGYLSR 301 Query: 313 TPRGRLLMPIAWQHLGIDI 331 TPRGR++ A+QHLG + Sbjct: 302 TPRGRVVTSAAYQHLGFQL 320 >gi|72162492|ref|YP_290149.1| Holliday junction DNA helicase RuvB [Thermobifida fusca YX] gi|97190406|sp|Q47N43|RUVB_THEFY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|71916224|gb|AAZ56126.1| Holliday junction DNA helicase subunit RuvB [Thermobifida fusca YX] Length = 351 Score = 315 bits (807), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 163/331 (49%), Positives = 226/331 (68%), Gaps = 2/331 (0%) Query: 3 DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 DRE L+S + +D + S LRPRTL+EF GQ L + + +A+ R A DH+L G Sbjct: 5 DRE-LVSPEAALDDHAVESALRPRTLDEFVGQDRVREQLSLVLRSAQQRGTAPDHILMSG 63 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PGLGKTTLA ++A ELG R TSGP I ++GDLAA+L+ L + +VLF+DEIHR++ Sbjct: 64 GPGLGKTTLAMIIAAELGAPLRITSGPAIERSGDLAAVLSTLREGEVLFLDEIHRMARPA 123 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF++D+MVG+GP A ++ + ++ FTL+ ATTR G+L PL+DRFG ++ Sbjct: 124 EEMLYVAMEDFRVDVMVGKGPGATAIPLEIAPFTLVGATTRAGMLPAPLRDRFGFVAHMD 183 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY E+L+ I+ R A+L G+ + D+AA EIA RSRGTPRIA RLLRRVRD+A+V + Sbjct: 184 FYSPEELELILHRSARLLGIELLDDAAAEIARRSRGTPRIANRLLRRVRDYAQVRGDGRL 243 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T E A AAL +D G D+LD L + R F GGPVG+ T++ + E + +E + E Sbjct: 244 TLECARAALSLYEVDDEGLDRLDRAVLDALLRRFRGGPVGLSTLAVSVGEEPETVEIVAE 303 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 P++++ GFI RTPRGR+ P AW H+G+ P Sbjct: 304 PFLVRAGFIARTPRGRVATPQAWAHMGLTPP 334 >gi|239939963|ref|ZP_04691900.1| Holliday junction DNA helicase RuvB [Streptomyces roseosporus NRRL 15998] gi|239986447|ref|ZP_04707111.1| Holliday junction DNA helicase RuvB [Streptomyces roseosporus NRRL 11379] gi|291443394|ref|ZP_06582784.1| holliday junction DNA helicase B [Streptomyces roseosporus NRRL 15998] gi|291346341|gb|EFE73245.1| holliday junction DNA helicase B [Streptomyces roseosporus NRRL 15998] Length = 361 Score = 315 bits (807), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 159/329 (48%), Positives = 222/329 (67%), Gaps = 1/329 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L+ + ED + + LRP+ L+EF GQ + L + ++AA+AR DHVL G PGL Sbjct: 22 LVDADADGEDTAVEAALRPKDLDEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 81 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+ R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+L Sbjct: 82 GKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 141 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 142 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAP 201 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+ +V R A+L + + E A EIA RSRGTPRIA RLLRRVRD+A+V TI REI Sbjct: 202 AELERVVHRSARLLDVGIDVEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKAEGTIDREI 261 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AAL +D G D+LD L + + FGGGPVG+ T++ + E R+ +E++ EP+++ Sbjct: 262 AAAALKVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLV 321 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++G + RTPRGR+ P AW HLG+ P Sbjct: 322 REGLLARTPRGRVATPAAWAHLGLVPPQH 350 >gi|111221575|ref|YP_712369.1| Holliday junction DNA helicase RuvB [Frankia alni ACN14a] gi|123143325|sp|Q0RNU6|RUVB_FRAAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|111149107|emb|CAJ60790.1| Holliday junction helicase, subunit B [Frankia alni ACN14a] Length = 366 Score = 315 bits (807), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 154/309 (49%), Positives = 218/309 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL EF GQ + L + +E A+AR DHVL GPPGLGKT+LA ++A EL V Sbjct: 22 LRPRTLTEFVGQRKVREQLSIMLEGAQARGRPPDHVLLSGPPGLGKTSLAMIIAEELAVP 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I +AGDL A+LT L +VLF+DEIHR++ EE+LY AMEDF++D+++G+G Sbjct: 82 LRMTSGPAIERAGDLVAILTALSPGEVLFLDEIHRIARPAEELLYAAMEDFRVDVILGKG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ ++++ FTL+ ATTR GLLT PL+DRFG L+FY ++L ++ R A L G+ Sbjct: 142 PGATAIPLDVAPFTLVGATTRSGLLTGPLRDRFGFTAHLDFYAPDELARVLTRSAGLLGV 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++T++ A E+A RSRGTPRIA RLLRRVRD+AEV +TR++A AAL +D +G D Sbjct: 202 SLTEDGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGVVTRDVARAALRIYDVDGLGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + FGGGPVG+ T++ + E + +ED+ EP++++ G + RT RGR+ P Sbjct: 262 RLDRAVLEALVGRFGGGPVGLTTLAVSVGEEPETVEDVAEPFLLRAGLLIRTSRGRIATP 321 Query: 322 IAWQHLGID 330 A++HLG++ Sbjct: 322 AAFEHLGLE 330 >gi|296270036|ref|YP_003652668.1| Holliday junction DNA helicase RuvB [Thermobispora bispora DSM 43833] gi|296092823|gb|ADG88775.1| Holliday junction DNA helicase RuvB [Thermobispora bispora DSM 43833] Length = 349 Score = 315 bits (807), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 159/331 (48%), Positives = 223/331 (67%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++R+ + V E + LRP+ L EF GQ L + +E+A+ R DHVL G Sbjct: 3 VERDLVSPEPVGDEPVIEATLRPKRLSEFIGQQRVREQLSLVLESARRRRRPPDHVLMSG 62 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PGLGKTTLA ++A ELG R TSGP + +AGDLAA+L+ L + +VLFIDEIHR++ Sbjct: 63 GPGLGKTTLALIIAAELGAPIRMTSGPALERAGDLAAILSTLTEGEVLFIDEIHRMARPA 122 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR GLL PL+DRFG ++ Sbjct: 123 EEMLYLAMEDFRIDVVVGKGPGATSIPLEIAPFTLVGATTRAGLLPAPLRDRFGFTAHMD 182 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FYE+ +L+ ++ R A+L G + ++ A EIA RSRGTPRIA RLLRRVRD+AEV I Sbjct: 183 FYEVAELEQVLHRSARLLGADLREDGAHEIAKRSRGTPRIANRLLRRVRDYAEVRAQGVI 242 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 TRE+A AAL +D G D+LD L + R FGGGPVG+ T++ + E + +E + E Sbjct: 243 TREVAAAALDLYEVDAEGLDRLDRAVLEALLRKFGGGPVGLSTLAVAVGEEPETVEIVAE 302 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 P++++QG + RTPRGR+ +AW+H G+ P Sbjct: 303 PFLVRQGLLARTPRGRVATALAWKHFGLTPP 333 >gi|332707639|ref|ZP_08427667.1| holliday junction DNA helicase subunit RuvB [Lyngbya majuscula 3L] gi|332353548|gb|EGJ33060.1| holliday junction DNA helicase subunit RuvB [Lyngbya majuscula 3L] Length = 363 Score = 315 bits (807), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 157/309 (50%), Positives = 218/309 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ E L++ I+AAKAR EA+DH+L GPPGLGKTT++ ++A E+ VN Sbjct: 55 IRPQRLADYIGQKELKGVLEIGIQAAKARNEAMDHLLLYGPPGLGKTTMSLILATEMEVN 114 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P + + D+ LL NL+ D+LFIDEIHRLS + EE+LYPAMED++LD+ +G+G Sbjct: 115 CKITAAPALERPRDIVGLLVNLKPGDILFIDEIHRLSRMTEELLYPAMEDYRLDITIGKG 174 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SA++ I L +FTL+ ATTRVG LT+PL+DRFG+ RL FYEI++L IV R A+L Sbjct: 175 QSAKTRSIPLPQFTLVGATTRVGSLTSPLRDRFGMIQRLRFYEIDELSLIVTRTAQLLKA 234 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 AVT++ A EIA RSRGTPRIA RLLRRVRD+A+V + I +++A A+ +D MG D Sbjct: 235 AVTEDGAEEIARRSRGTPRIANRLLRRVRDYAQVKGIEQINQDVAAQAMEIFNVDPMGLD 294 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D L ++ F GGPVG+E ++A E IE++ EPY++Q GF+ RTPRGR+ Sbjct: 295 WTDRLVLKVMIEQFNGGPVGLEAVAASTGEDAQTIEEVYEPYLLQIGFLHRTPRGRVATS 354 Query: 322 IAWQHLGID 330 A +HLG + Sbjct: 355 AARKHLGYE 363 >gi|318057101|ref|ZP_07975824.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SA3_actG] Length = 356 Score = 315 bits (806), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 158/328 (48%), Positives = 221/328 (67%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L+ ED + + LRP+ L+EF GQ + L + ++AA+AR DHVL G PGL Sbjct: 18 LVDAGADTEDTAVEAALRPKDLDEFIGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 77 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+ R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+L Sbjct: 78 GKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 137 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF++D++VG+GP A ++ ++L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 138 YMAMEDFRVDVIVGKGPGATAIPLDLPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYAP 197 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+ ++ R A+L +A+ A EIA RSRGTPRIA RLLRRVRD+A+V IT EI Sbjct: 198 AELERVIHRSARLLDVAIDAAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGHITVEI 257 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AAL +D G D+LD L + + F GGPVG+ T+S + E R+ +E++ EP+++ Sbjct: 258 ASAALGVYEVDARGLDRLDRAVLEALLKLFSGGPVGLSTLSVAVGEERETVEEVAEPFLV 317 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++GF+ RTPRGR+ P AW HLG+ P Sbjct: 318 REGFLARTPRGRVATPAAWAHLGLAPPQ 345 >gi|466823|gb|AAA17098.1| ruvB [Mycobacterium leprae] Length = 369 Score = 315 bits (806), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 154/308 (50%), Positives = 214/308 (69%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84 R+L EF GQ L++ IE AK R DH+L GPPGLGKT+LA ++A ELG + R Sbjct: 48 RSLREFIGQPRVREQLQLVIEGAKNRGATPDHILLSGPPGLGKTSLAMIIAAELGSSLRM 107 Query: 85 TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144 TSGP + +AGDLA +L+NL + DVLFIDEIHR++ EE+LY AMEDF++D++VG+GP A Sbjct: 108 TSGPALERAGDLAVMLSNLVEHDVLFIDEIHRIARPAEEMLYLAMEDFRVDVIVGKGPGA 167 Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204 S+ + ++ FTL+ ATTR G LT PL+DRFG ++FYE +L+ ++ R A + G+ + Sbjct: 168 TSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFYEPTELEGVLARAAGILGIELG 227 Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264 EA EIA RSRGTPRIA RLLRRVRDFAEV ITR++A AAL +D++G D+LD Sbjct: 228 VEAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVITRDVAKAALAVYDVDELGLDRLD 287 Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324 L+ + R+FGGGPVG+ T++ + E +E++ EP++++ G + RTPRGR+ AW Sbjct: 288 RAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCEPFLVRAGMVARTPRGRVATAQAW 347 Query: 325 QHLGIDIP 332 +L + P Sbjct: 348 TYLCMTPP 355 >gi|300866394|ref|ZP_07111092.1| Holliday junction ATP-dependent DNA helicase ruvB [Oscillatoria sp. PCC 6506] gi|300335604|emb|CBN56252.1| Holliday junction ATP-dependent DNA helicase ruvB [Oscillatoria sp. PCC 6506] Length = 367 Score = 315 bits (806), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 155/307 (50%), Positives = 213/307 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + L + ++AAK+R E LDH+L GPPGLGKTT++ ++A E+GVN Sbjct: 55 IRPHRLADYIGQKDLKEFLAIALQAAKSRNEPLDHLLLYGPPGLGKTTMSLIIAEEMGVN 114 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P + K D+ LL +L+ DVLF+DEIHRLS + EEILYPAMED +LD+ +G+G Sbjct: 115 CKITTAPALEKPRDIVGLLVSLKAGDVLFLDEIHRLSKVAEEILYPAMEDCRLDITIGQG 174 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +A++ I L FTL+ ATT+VG LT PL+DRFG RL FYEI++L +IV R A++ Sbjct: 175 KTAKTRSIPLKPFTLVGATTKVGSLTAPLRDRFGFIQRLRFYEIDELTSIVLRSAQVLDT 234 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T E A EIA R+RGTPRIA RLLRRVRD++EV + I E+A +L +D +G D Sbjct: 235 PITTEGAQEIARRARGTPRIANRLLRRVRDYSEVKNLTPIDAEVASISLELFNVDPLGLD 294 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D L+ + +F GGPVG+ETI+A E IE++ EPY++Q GF+QRT RGR+ P Sbjct: 295 WTDRLILSRMIESFNGGPVGLETIAAATGEDSQTIEEVCEPYLMQIGFMQRTNRGRIATP 354 Query: 322 IAWQHLG 328 AW+HLG Sbjct: 355 AAWKHLG 361 >gi|331697369|ref|YP_004333608.1| Holliday junction ATP-dependent DNA helicase ruvB [Pseudonocardia dioxanivorans CB1190] gi|326952058|gb|AEA25755.1| Holliday junction ATP-dependent DNA helicase ruvB [Pseudonocardia dioxanivorans CB1190] Length = 346 Score = 314 bits (805), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 157/323 (48%), Positives = 220/323 (68%), Gaps = 1/323 (0%) Query: 11 NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 V +ED D+ LRPR L EF GQ L++ +E A+ R DH+L GPPGLGKT+ Sbjct: 12 EVLEEDLDVEGTLRPRRLSEFIGQPRVREQLELVLEGARRRGTPPDHILLSGPPGLGKTS 71 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 L+ +VA ELG R TSGP + +AGDLAA+L+NL DVLFIDEIHR++ EE+LY AM Sbjct: 72 LSMIVAAELGAAIRLTSGPALERAGDLAAMLSNLMPGDVLFIDEIHRIARPAEEMLYLAM 131 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 EDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG + FYE +L+ Sbjct: 132 EDFRVDVVVGKGPGATSIPLDIAPFTLVGATTRAGALTGPLRDRFGFTGHMEFYEPAELE 191 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 +++R A + + + + A EIA RSRGTPRIA RLLRRVRDFAEV +T ++A A Sbjct: 192 LVLRRAAAILEVDLRPDGAAEIARRSRGTPRIANRLLRRVRDFAEVRADGAVTLDVAREA 251 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L +D++G D+LD L+ + ++FGGGPVG+ T++ + E +E++ EPY+++ G Sbjct: 252 LAVYDVDELGLDRLDRAVLSALVKSFGGGPVGVSTLAVAVGEEPGTVEEVCEPYLVRAGM 311 Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332 + RTPRGR+ AW HLG+ P Sbjct: 312 LARTPRGRVATAAAWGHLGVTPP 334 >gi|296117791|ref|ZP_06836374.1| holliday junction DNA helicase RuvB [Corynebacterium ammoniagenes DSM 20306] gi|295969022|gb|EFG82264.1| holliday junction DNA helicase RuvB [Corynebacterium ammoniagenes DSM 20306] Length = 359 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 151/311 (48%), Positives = 213/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+EF GQ + L + + AK R DHVL GPPGLGKTT+A ++A+E+G + Sbjct: 42 LRPKGLDEFIGQPKVKEQLSLVLTGAKNRGVTPDHVLLSGPPGLGKTTMAMIIAQEMGTS 101 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP + +AGDLAA+L+NL + D+LFIDEIHR++ EE+LY AMEDF++D++VG+G Sbjct: 102 LRMTSGPALERAGDLAAMLSNLMEGDILFIDEIHRIARPAEEMLYMAMEDFRIDVIVGKG 161 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + + FTL+ ATTR G+LT PL+DRFG ++ +Y +DL+ +V R A++ G+ Sbjct: 162 PGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYNNDDLEHVVTRAARILGV 221 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA EI RSRGTPRIA RLLRRVRDFAEV + A AL +D MG D Sbjct: 222 EIDNDAAVEIGSRSRGTPRIANRLLRRVRDFAEVNGDGHVDMAAARGALEVFDVDHMGLD 281 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD LT + + GGGPVG+ T++ + E +E++ EPY+++ G I R+ RGR+ Sbjct: 282 RLDRAVLTALIKGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVRAGMIARSARGRVATR 341 Query: 322 IAWQHLGIDIP 332 AW+HLG+ P Sbjct: 342 SAWEHLGMTPP 352 >gi|284991599|ref|YP_003410153.1| Holliday junction DNA helicase RuvB [Geodermatophilus obscurus DSM 43160] gi|284064844|gb|ADB75782.1| Holliday junction DNA helicase RuvB [Geodermatophilus obscurus DSM 43160] Length = 366 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 153/313 (48%), Positives = 214/313 (68%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP +L +F GQ + L++ +E AK R DHVL GPPGLGKT+LA ++ ELG Sbjct: 28 SALRPHSLTDFIGQPKVARQLELVLEGAKRRGRPPDHVLLSGPPGLGKTSLALIIGSELG 87 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + TSGP I ++GDLAA+L+NL DVLFIDEIHR++ EE+LY AMEDF++D++VG Sbjct: 88 TAVKITSGPAIERSGDLAAMLSNLAPGDVLFIDEIHRIARPAEELLYMAMEDFRVDVVVG 147 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GP A ++ + ++ FTL+ ATTR GLLT PL+DRFG ++ FYE +L+ ++ R A L Sbjct: 148 KGPGATAIPLEINPFTLVGATTRAGLLTGPLRDRFGFVGQMEFYEPAELQLVLARSAALL 207 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 G+ +T + + EIA RSRGTPRIA RLLRRVRD+AEV +TR +A+AAL +D +G Sbjct: 208 GVELTADGSAEIAGRSRGTPRIANRLLRRVRDYAEVRADGRVTRAVAEAALALYDVDHLG 267 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D+LD L + F GGPVG+ T++ + E +E++ EP++++ G + RTPRGR+ Sbjct: 268 LDRLDRAVLEALVMRFSGGPVGVATLAVAVGEEPHTVEEVCEPFLVRAGLLARTPRGRVA 327 Query: 320 MPIAWQHLGIDIP 332 AW HLG +P Sbjct: 328 TEAAWHHLGQPVP 340 >gi|311739556|ref|ZP_07713391.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium pseudogenitalium ATCC 33035] gi|311305372|gb|EFQ81440.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium pseudogenitalium ATCC 33035] Length = 359 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 154/340 (45%), Positives = 222/340 (65%), Gaps = 12/340 (3%) Query: 5 EGLLSRNVSQEDADISL------------LRPRTLEEFTGQVEACSNLKVFIEAAKARAE 52 EG+ + + +Q ++D+ LRP++LEEF GQ + L + ++ AK R Sbjct: 13 EGVDAAHTTQRNSDVDATAHSEEHDIERSLRPKSLEEFIGQPKVREQLSLVLKGAKNRGV 72 Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 DHVL GPPGLGKTT+A ++++ELG + R TSGP + +AGDLAA+L+NL + DVLFID Sbjct: 73 TPDHVLLSGPPGLGKTTMAMIISQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFID 132 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 EIHR++ EE+LY AMEDF++D++VG+GP A S+ + + FTL+ ATTR G+LT PL+D Sbjct: 133 EIHRIARPAEEMLYMAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRD 192 Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 RFG ++ +Y+ DL +++R A + + + +AA EI RSRGTPRIA RLLRRVRD+ Sbjct: 193 RFGFTAQMEYYDTADLTQVIKRAAHILDVEIDHDAAVEIGSRSRGTPRIANRLLRRVRDY 252 Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292 AEV I A AL +D MG D+LD L + + GGGPVG+ T++ + E Sbjct: 253 AEVNGTGLIDLSAAQGALEVFDVDDMGLDRLDRAVLNALIKGHGGGPVGVSTLAIAVGEE 312 Query: 293 RDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +E++ EPY+++ G + RT RGR+ AW+HLG+ P Sbjct: 313 PSTVEEVCEPYLVRAGMVARTGRGRVATAAAWRHLGLTPP 352 >gi|182439810|ref|YP_001827529.1| Holliday junction DNA helicase RuvB [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780474|ref|ZP_08239739.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptomyces cf. griseus XylebKG-1] gi|238689025|sp|B1W3G4|RUVB_STRGG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|178468326|dbj|BAG22846.1| putative Holliday junction DNA helicase subunit A [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660807|gb|EGE45653.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptomyces cf. griseus XylebKG-1] Length = 361 Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 158/328 (48%), Positives = 221/328 (67%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L+ + ED + + LRP+ LEEF GQ + L + ++AA+AR DHVL G PGL Sbjct: 22 LVDADADGEDTAVEAALRPKDLEEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 81 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+ R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+L Sbjct: 82 GKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 141 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 142 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAP 201 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+ ++ R A+L + + E A EIA RSRGTPRIA RLLRRVRD+A+V TI R I Sbjct: 202 AELERVLHRSARLLDVGIDGEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKAEGTIDRSI 261 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AAL +D G D+LD L + + FGGGPVG+ T++ + E R+ +E++ EP+++ Sbjct: 262 AMAALKVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLV 321 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++G + RTPRGR+ P AW HLG+ P Sbjct: 322 REGLLARTPRGRVATPAAWAHLGLVPPQ 349 >gi|239978431|ref|ZP_04700955.1| Holliday junction DNA helicase RuvB [Streptomyces albus J1074] gi|291450327|ref|ZP_06589717.1| holliday junction DNA helicase B [Streptomyces albus J1074] gi|291353276|gb|EFE80178.1| holliday junction DNA helicase B [Streptomyces albus J1074] Length = 361 Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 155/313 (49%), Positives = 215/313 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ + + L + ++AA+AR DHVL G PGLGKTTL+ ++A E+ Sbjct: 36 LRPKELGEFIGQEKVRAQLDLVLKAARARGATADHVLLSGAPGLGKTTLSMIIAAEMEAP 95 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 96 IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 155 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + L FTL+ ATTR GLL PL+DRFG + FY +L+ +V R A+L + Sbjct: 156 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYGPAELERVVHRSARLLDV 215 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A EIA RSRGTPRIA RLLRRVRD+A+V + REIA AAL +D G D Sbjct: 216 EIDTEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGAVDREIASAALAVYEVDARGLD 275 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + + FGGGPVG+ T+S + E R+ +E++ EP+++++G + RTPRGR+ P Sbjct: 276 RLDRSVLEALLKLFGGGPVGLSTLSVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 335 Query: 322 IAWQHLGIDIPHR 334 AW HLG+ P + Sbjct: 336 AAWAHLGLTPPRQ 348 >gi|297571394|ref|YP_003697168.1| Holliday junction DNA helicase RuvB [Arcanobacterium haemolyticum DSM 20595] gi|296931741|gb|ADH92549.1| Holliday junction DNA helicase RuvB [Arcanobacterium haemolyticum DSM 20595] Length = 338 Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 162/319 (50%), Positives = 218/319 (68%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A + LRP+ LE+F GQ L + ++AA AR +A DHVL GPPGLGKTTLA ++ Sbjct: 15 ERAQEAALRPKRLEDFVGQQIVREQLSLVLDAAIARQKAPDHVLLSGPPGLGKTTLAMII 74 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+G R TSGP I GDLAA+L++L++ DVLFIDEIHRL+ EE+LY AMEDF++ Sbjct: 75 AAEVGGALRLTSGPAIQHPGDLAAVLSSLQEGDVLFIDEIHRLARTAEEMLYLAMEDFRV 134 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D+MVG+GP A S+ + L FT++ ATTR G+L PL+DRFG L++Y E+L +IV+R Sbjct: 135 DVMVGKGPGATSIPLALPPFTVVGATTRAGMLPAPLRDRFGFTAYLDYYTHEELASIVER 194 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A ++ +AA EIA RSRGTPRIA RLLRRV+D+A+V + E A +AL Sbjct: 195 NAIKLDAELSADAAVEIASRSRGTPRIANRLLRRVQDWAQVRGTGKLDVEAARSALNVFE 254 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D+LD L + R F GGPVG+ T++ + E + IE + EPY+++QGFI +TP Sbjct: 255 VDLRGLDRLDRAVLEALCRRFNGGPVGLTTLAVSVGEEPETIETVAEPYLMRQGFISKTP 314 Query: 315 RGRLLMPIAWQHLGIDIPH 333 RGR+ P+AW+HLGI P Sbjct: 315 RGRIATPMAWEHLGIIPPE 333 >gi|283783299|ref|YP_003374053.1| Holliday junction DNA helicase RuvB [Gardnerella vaginalis 409-05] gi|283441733|gb|ADB14199.1| Holliday junction DNA helicase RuvB [Gardnerella vaginalis 409-05] Length = 353 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 214/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR LE F GQ + L++F++AAK R A DH+L GPPGLGKTTLA +VA EL V Sbjct: 36 LRPRALEGFIGQPVLKAQLQLFLDAAKKRDVAPDHMLLAGPPGLGKTTLAMIVANELQVP 95 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLA++L+ L+ +VLFIDEIHRL EE+LY AMEDF++D+MVG+G Sbjct: 96 IRITSGPAIQHAGDLASILSALDAGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 155 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + L RFT++ ATTR G+L +PL+ RFG L+FY E+L+ +++R AK+ G+ Sbjct: 156 PGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHEELEKLIERSAKVLGI 215 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+AA E+++RSRGTPRIA RLLRRVRD+A V + E AL ID G D Sbjct: 216 RLIDQAAKELSLRSRGTPRIANRLLRRVRDWAIVHDLSEVNHEAVVEALALYQIDTQGLD 275 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD+ L + F GGPVG+ ++A + E + +E + EPY++++GF+ RTP+GR+ Sbjct: 276 RLDIAVLKAMVCQFNGGPVGLNNLAAMVGEEAETVETVCEPYLVREGFLIRTPKGRVATS 335 Query: 322 IAWQHLGIDIP 332 AW+HLG P Sbjct: 336 KAWKHLGFKEP 346 >gi|295839917|ref|ZP_06826850.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SPB74] gi|197696746|gb|EDY43679.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SPB74] Length = 356 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 157/328 (47%), Positives = 220/328 (67%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L+ ED + + LRP+ L+EF GQ + L + ++AA+AR DHVL G PGL Sbjct: 18 LVDAGADTEDTAVEAALRPKDLDEFIGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 77 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+ R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+L Sbjct: 78 GKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 137 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 138 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYAP 197 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+ ++ R A+L +A+ A EIA RSRGTPRIA RLLRRVRD+A+V IT +I Sbjct: 198 AELERVIHRSAQLLDVAIDPAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGHITEDI 257 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AAL +D G D+LD L + + FGGGPVG+ T+S + E R+ +E++ EP+++ Sbjct: 258 ASAALGVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLSVAVGEERETVEEVAEPFLV 317 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++G + RTPRGR+ P AW HLG+ P Sbjct: 318 REGLLARTPRGRVATPAAWAHLGLAPPQ 345 >gi|227495488|ref|ZP_03925804.1| crossover junction endoribonuclease subunit B [Actinomyces coleocanis DSM 15436] gi|226831035|gb|EEH63418.1| crossover junction endoribonuclease subunit B [Actinomyces coleocanis DSM 15436] Length = 337 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 159/332 (47%), Positives = 222/332 (66%), Gaps = 1/332 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD +++ + S+ + + + LRPR L +F GQ + C L++ + AA+ R + DHVL Sbjct: 1 MDNNSIVNASASESERAVEAALRPRKLTDFIGQPKVCEQLELVLTAAQNRGVSPDHVLLA 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTL+ ++A ELG + R TSGP I AGDLAA+L++L++ DVLFIDEIHRL+ Sbjct: 61 GPPGLGKTTLSMIIAAELGASLRLTSGPAIQHAGDLAAILSSLQEGDVLFIDEIHRLART 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D++VG+GP A S+ + L FT++ ATTR GLL PL+DRFG L Sbjct: 121 AEEMLYLAMEDFRVDVIVGKGPGATSIPLTLPPFTVVGATTRSGLLPAPLRDRFGFTAHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +Y+ +L+ +V+R A+L + EAA EIA RSRGTPRIA RLLRRV DFA+V Sbjct: 181 EYYDAAELQKVVERSARLLETEIDVEAAAEIAGRSRGTPRIANRLLRRVVDFAQVHGNGV 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + R A AAL +D G D+LD L + F GGPVG+ T++ + E + +E + Sbjct: 241 VDRAAAQAALTLFEVDPEGLDRLDRAVLETLCTRFNGGPVGLTTLAITVGEEPETVETVA 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++++GF+ RT RGR AW+HLG+ P Sbjct: 301 EPYLVREGFVIRTTRGRAATRKAWEHLGLIPP 332 >gi|298252763|ref|ZP_06976557.1| Holliday junction resolvasome, helicase subunit [Gardnerella vaginalis 5-1] gi|297533127|gb|EFH72011.1| Holliday junction resolvasome, helicase subunit [Gardnerella vaginalis 5-1] Length = 371 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 214/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR LE F GQ + L++F++AAK R A DH+L GPPGLGKTTLA +VA EL V Sbjct: 54 LRPRALEGFIGQPVLKAQLQLFLDAAKKRDVAPDHMLLAGPPGLGKTTLAMIVANELQVP 113 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLA++L+ L+ +VLFIDEIHRL EE+LY AMEDF++D+MVG+G Sbjct: 114 IRITSGPAIQHAGDLASILSALDAGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 173 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + L RFT++ ATTR G+L +PL+ RFG L+FY E+L+ +++R AK+ G+ Sbjct: 174 PGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHEELEKLIERSAKVLGI 233 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+AA E+++RSRGTPRIA RLLRRVRD+A V + E AL ID G D Sbjct: 234 RLIDQAAKELSLRSRGTPRIANRLLRRVRDWAIVHDLSEVNHEAVVEALALYQIDTQGLD 293 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD+ L + F GGPVG+ ++A + E + +E + EPY++++GF+ RTP+GR+ Sbjct: 294 RLDIAVLKAMVCQFNGGPVGLNNLAAMVGEEAETVETVCEPYLVREGFLIRTPKGRVATS 353 Query: 322 IAWQHLGIDIP 332 AW+HLG P Sbjct: 354 KAWKHLGFKEP 364 >gi|218438533|ref|YP_002376862.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7424] gi|226725455|sp|B7K9M6|RUVB_CYAP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|218171261|gb|ACK69994.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7424] Length = 366 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 163/325 (50%), Positives = 219/325 (67%), Gaps = 4/325 (1%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 G L + ED+ +RPR L ++ GQ E LK+ I AAK R EALDH+L GPPGL Sbjct: 38 GRLEETEAAEDS----IRPRNLNDYIGQKELKEVLKIAIGAAKVRKEALDHLLLYGPPGL 93 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTT+A ++A E+GVN + T+ P + + D+ LL NL+ D+LFIDEIHRL+ + EE+L Sbjct: 94 GKTTMALILAAEMGVNCKITAAPALERPRDITGLLINLKPGDILFIDEIHRLNRMSEELL 153 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMED +LD+ G+G SA+ I LS FTLI ATT++G LT+PL+DRFG+ RL FYE+ Sbjct: 154 YPAMEDQRLDITTGKGKSAKIRSIPLSPFTLIGATTKIGALTSPLRDRFGLIQRLRFYEV 213 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++L +V R AK+ + +E A EIA RSRGTPRIA RLL+RVRD+A V ++IT + Sbjct: 214 DELCLVVLRTAKILNAKIKEEGALEIARRSRGTPRIANRLLKRVRDYALVKKIESITEAL 273 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL +L +D G D D L I + F GGPVG+ET++A E IE++ EPY++ Sbjct: 274 AAEALDKLNVDSRGLDWTDRLVLDTIIQQFRGGPVGLETVAAATGEDAKTIEEVYEPYLL 333 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330 Q G++ RT RGR+ A+QHLG D Sbjct: 334 QIGYLNRTSRGRIATEAAYQHLGYD 358 >gi|294786922|ref|ZP_06752176.1| holliday junction DNA helicase RuvB [Parascardovia denticolens F0305] gi|315226558|ref|ZP_07868346.1| crossover junction ATP-dependent DNA helicase RuvB [Parascardovia denticolens DSM 10105] gi|294485755|gb|EFG33389.1| holliday junction DNA helicase RuvB [Parascardovia denticolens F0305] gi|315120690|gb|EFT83822.1| crossover junction ATP-dependent DNA helicase RuvB [Parascardovia denticolens DSM 10105] Length = 366 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 155/313 (49%), Positives = 217/313 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP TL+ F GQ + + L +F++AA+ R DH+L GPPGLGKTTL+ +VA+ELGV Sbjct: 45 LRPATLDTFIGQPQLKAQLGLFLQAAQKRGVPPDHILLAGPPGLGKTTLSMIVAKELGVP 104 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLA++L++L++ +VLFIDEIHRL EE+LY AMEDF++D+MVG+G Sbjct: 105 IRVTSGPAIQHAGDLASILSSLDEGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 164 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + L RFT I ATTR G+L +PL+ RFG L++Y +L+ +++R A + + Sbjct: 165 PGASSIPLTLPRFTAIGATTREGMLPSPLRARFGFTAHLDYYPKSELERLIKRSALVLNM 224 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+A E+A+RSRGTPR+A RLLRRVRD+ V +TI E AL IDK G D Sbjct: 225 TIDDQATRELALRSRGTPRVANRLLRRVRDWGIVHGLETIDAEAVIDALELYQIDKEGLD 284 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD+ LT + + F GGPVG+ +SA + E + +E + EPY++++GF+ RTPRGR Sbjct: 285 RLDIAVLTALCKQFKGGPVGLNNLSAMVGEEAETVETVCEPYLVREGFLVRTPRGRAATD 344 Query: 322 IAWQHLGIDIPHR 334 AW+HLG+ P + Sbjct: 345 RAWKHLGLQPPEQ 357 >gi|72383030|ref|YP_292385.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. NATL2A] gi|97190202|sp|Q46IJ6|RUVB_PROMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|72002880|gb|AAZ58682.1| Holliday junction DNA helicase subunit RuvB [Prochlorococcus marinus str. NATL2A] Length = 356 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 152/324 (46%), Positives = 226/324 (69%), Gaps = 5/324 (1%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +SQ+D+ LRP++ ++F GQ E L++ ++A+ R EALDH++ GPPGLGKTT+ Sbjct: 33 KLSQQDS----LRPKSFDDFVGQSELKKVLEISVKASLKRGEALDHLMLYGPPGLGKTTM 88 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A V+A ELGV R TS P + + D+ LL N++ R+++F+DEIHRL+ I +E+LYPAME Sbjct: 89 ALVIAEELGVKARVTSAPALERPRDIVGLLINIQPRELIFVDEIHRLNRISQELLYPAME 148 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D +LDL VG+G S+R I + FTL+ ATT+ L++P++DRFGI RL+FY DL+ Sbjct: 149 DRRLDLTVGKGTSSRMRSIEIPPFTLVGATTKPAALSSPMRDRFGITQRLDFYNYLDLEN 208 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAA 249 I++R AKL L +++EA+ ++A R RGTPRIA RL+RRVRD+AEV +H+K I E+ + A Sbjct: 209 IIKRSAKLINLVISEEASQQLAKRCRGTPRIANRLIRRVRDYAEVYSHSKKIDVEVVNDA 268 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L +D+ G D D Y+ ++ + GGPVG+ET++AGL E +E ++EPY++Q GF Sbjct: 269 LDLHRVDQRGLDATDRSYIGLLVNQYQGGPVGLETLAAGLGEDSTTLETVVEPYLMQIGF 328 Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333 + RT RGR++ P A +H + P+ Sbjct: 329 LHRTSRGRVVTPAAKKHYLLTSPN 352 >gi|255325095|ref|ZP_05366201.1| holliday junction DNA helicase RuvB [Corynebacterium tuberculostearicum SK141] gi|255297660|gb|EET76971.1| holliday junction DNA helicase RuvB [Corynebacterium tuberculostearicum SK141] Length = 359 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 153/320 (47%), Positives = 215/320 (67%), Gaps = 1/320 (0%) Query: 14 QEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 E+ DI LRP++L+EF GQ + L + I+ AK R DHVL GPPGLGKTT+A Sbjct: 33 SEEHDIERSLRPKSLDEFIGQPKVREQLSLVIKGAKNRGVTPDHVLLSGPPGLGKTTMAM 92 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++++ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF Sbjct: 93 IISQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDF 152 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 ++D++VG+GP A S+ + + FTL+ ATTR G+LT PL+DRFG ++ +Y+ DL ++ Sbjct: 153 RIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYDTADLTQVI 212 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R A + + + +AA EI RSRGTPRIA RLLRRVRD+AEV I A AL Sbjct: 213 KRAAHILDVEIDHDAAVEIGSRSRGTPRIANRLLRRVRDYAEVNGTGLIDLSAAQGALEV 272 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 +D MG D+LD L + + GGGPVG+ T++ + E +E++ EPY+++ G + R Sbjct: 273 FDVDDMGLDRLDRAVLNALIKGHGGGPVGVSTLAIAVGEEPSTVEEVCEPYLVRAGMVAR 332 Query: 313 TPRGRLLMPIAWQHLGIDIP 332 T RGR+ AW+HLG+ P Sbjct: 333 TGRGRVATAAAWRHLGLTPP 352 >gi|212715819|ref|ZP_03323947.1| hypothetical protein BIFCAT_00720 [Bifidobacterium catenulatum DSM 16992] gi|212661186|gb|EEB21761.1| hypothetical protein BIFCAT_00720 [Bifidobacterium catenulatum DSM 16992] Length = 357 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 158/318 (49%), Positives = 216/318 (67%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V E LRP L+ F GQ + L++F++AA+ R DH+L GPPGLGKTTLA Sbjct: 27 VGNEPVSDEELRPHVLDGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKTTLA 86 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA ELGV R TSGP I AGDLA++L++L+ +VLFIDEIHRL EE+LY AMED Sbjct: 87 MIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 146 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY E+L+ + Sbjct: 147 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 206 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R + + G+ + D AA ++AMRSRGTPRIA RLLRRVRD+A V +T+ AL Sbjct: 207 IERSSAVLGIRLEDGAAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLETVHPNDVKEALA 266 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 ID G D+LD+ L I NF GGPVG+ +SA + E + +E + EPY++++GF+ Sbjct: 267 LYQIDTEGLDRLDIAVLKAIVTNFNGGPVGLNNLSAMVGEESETVETVCEPYLVREGFLV 326 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTP+GR+ AW+HLG+ Sbjct: 327 RTPKGRVATRKAWEHLGL 344 >gi|317968453|ref|ZP_07969843.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CB0205] Length = 329 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 162/306 (52%), Positives = 213/306 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ E L + IEA +AR EALDHVL GPPGLGKTT+A V+A ELGV Sbjct: 19 LRPKQLADYIGQSELKQVLGIAIEATRARDEALDHVLLYGPPGLGKTTMAMVLAEELGVR 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TS P + + D+ LL NL+ R++LFIDEIHRL+ + EE+LYPAMEDF+LDL VG+G Sbjct: 79 CRITSAPALERPRDIVGLLVNLQPRELLFIDEIHRLTRVAEELLYPAMEDFRLDLTVGKG 138 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+ I L+ FTL+ ATTR G L++PL+DRFG+ RL FY +EDL+ IVQR A L L Sbjct: 139 TTARTRTIPLAPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGLEDLQAIVQRAAGLLAL 198 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +EAA E+A R RGTPRIA RLLRRVRD A V ++ E+ AL +D G D Sbjct: 199 DLAEEAALEVARRCRGTPRIANRLLRRVRDVASVGGHARVSAELVQQALSLHRVDGRGLD 258 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L ++ +GGGPVG++T++AGL E +E ++EP+++QQG +QRTPRGR++ Sbjct: 259 ASDRRLLDLLHNGYGGGPVGLDTLAAGLGEDPVTLESVVEPFLLQQGLLQRTPRGRVITQ 318 Query: 322 IAWQHL 327 HL Sbjct: 319 AGIDHL 324 >gi|189218507|ref|YP_001939148.1| Holliday junction resolvasome, helicase subunit RuvB [Methylacidiphilum infernorum V4] gi|189185365|gb|ACD82550.1| Holliday junction resolvasome, helicase subunit RuvB [Methylacidiphilum infernorum V4] Length = 350 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 147/311 (47%), Positives = 222/311 (71%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+EF GQ + L + ++AAK + E L H+LF GPPGLGKTTLA ++++E+ + Sbjct: 33 LRPQKLDEFLGQEKIRERLYILVQAAKIKNEPLPHLLFSGPPGLGKTTLAHILSKEMNAS 92 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP + KA +LA +LT+LE DVLFIDEIHRLS VEE LYPAMEDF++D+++ +G Sbjct: 93 LKITSGPALDKAANLAGILTSLESFDVLFIDEIHRLSRPVEEYLYPAMEDFRMDILIDQG 152 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+++NL +FTL+ ATTRVGLLT PL+ RFG+ RL +Y++EDL IVQR A++ + Sbjct: 153 PNARSIRLNLPKFTLVGATTRVGLLTEPLRSRFGLINRLEYYKVEDLVRIVQRSARILEI 212 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V ++AA E+A R RGTPR LLR +RD+A + ++ ++ + AL + ID+ G D Sbjct: 213 EVNEQAAKEVAKRCRGTPRTVNHLLRWIRDYAYAKGYQKVSLDVVNKALEMIEIDEDGLD 272 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L I F GGPVG+++++ + E +E++ EPY+I +G+++RTP+GR++ Sbjct: 273 EMDKKILETIIYKFEGGPVGLQSLAVAVGEDPGTLEEVHEPYLILEGYLKRTPQGRVVTA 332 Query: 322 IAWQHLGIDIP 332 A++ L +P Sbjct: 333 RAYEKLKAVLP 343 >gi|225352126|ref|ZP_03743149.1| hypothetical protein BIFPSEUDO_03741 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157373|gb|EEG70712.1| hypothetical protein BIFPSEUDO_03741 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 362 Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 157/318 (49%), Positives = 217/318 (68%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V E LRP L+ F GQ + L++F++AA+ R DH+L GPPGLGKTTLA Sbjct: 32 VGNEPVSDEELRPHVLDGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKTTLA 91 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA ELGV R TSGP I AGDLA++L++L+ +VLFIDEIHRL EE+LY AMED Sbjct: 92 MIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 151 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY E+L+ + Sbjct: 152 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 211 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R + + G+++ + AA ++AMRSRGTPRIA RLLRRVRD+A V +T+ + AL Sbjct: 212 IERSSSVLGISLEEGAAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLETVHPDDVKEALA 271 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 ID G D+LD+ L I NF GGPVG+ +SA + E + +E + EPY++++GF+ Sbjct: 272 LYQIDTEGLDRLDIAVLKAIVTNFNGGPVGLNNLSAMVGEESETVETVCEPYLVREGFLV 331 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTP+GR+ AW HLG+ Sbjct: 332 RTPKGRVATRKAWDHLGL 349 >gi|227504982|ref|ZP_03935031.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum ATCC 6940] gi|227198432|gb|EEI78480.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum ATCC 6940] Length = 367 Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 150/312 (48%), Positives = 211/312 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++++EF GQ + L + + AK R DHVL GPPGLGKTT+A ++A+ELG + Sbjct: 48 LRPKSIDEFIGQPKVREQLSLVLNGAKNRGVTPDHVLLSGPPGLGKTTMAMIIAQELGTS 107 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF++D++VG+G Sbjct: 108 LRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFRIDVIVGKG 167 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + + FTL+ ATTR G+LT PL+DRFG ++ +Y+ DL ++ R A + + Sbjct: 168 PGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYDTADLTKVITRAATILDV 227 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EI RSRGTPRIA RLLRRVRDFAEV I A AL +D+MG D Sbjct: 228 EIDQDAAVEIGSRSRGTPRIANRLLRRVRDFAEVNGDGHIDLAAAQGALAVFDVDEMGLD 287 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + + GGGPVG+ T++ + E +E++ EPY+++ G I RT RGR+ Sbjct: 288 RLDRAVLEALIKGHGGGPVGVNTLAVAVGEEPSTVEEVCEPYLVRAGMIARTGRGRVATA 347 Query: 322 IAWQHLGIDIPH 333 AW+H+G++ P Sbjct: 348 AAWRHIGLEPPE 359 >gi|225166217|ref|ZP_03727926.1| Holliday junction DNA helicase RuvB [Opitutaceae bacterium TAV2] gi|224799539|gb|EEG18059.1| Holliday junction DNA helicase RuvB [Opitutaceae bacterium TAV2] Length = 353 Score = 312 bits (800), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 158/308 (51%), Positives = 217/308 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + +FTGQ + L+V + AA+ R EAL+H+L GPPGLGKTTL ++ E+G N Sbjct: 28 LRPLSFADFTGQPKTVERLQVMVGAARRRGEALNHILISGPPGLGKTTLCFILGHEMGKN 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGPV+ KAGDLA LLTNLE+ D+LFIDEIHR+ VEE LY AMEDF+LD+M+ +G Sbjct: 88 VRVTSGPVVEKAGDLAGLLTNLEEGDILFIDEIHRIPKTVEEYLYSAMEDFRLDIMIDQG 147 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV++++ RFTL+ ATTR GLLT PL+ RF + RL++Y++ L IVQR L + Sbjct: 148 PNARSVRLSIPRFTLVGATTRAGLLTAPLRSRFTLQTRLDYYDVPTLMGIVQRSCGLLKV 207 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA R+RGTPRIA L+ VRDFA+ ITR A AAL L ID G D Sbjct: 208 TIDEAGAREIASRARGTPRIANNLINFVRDFAQERGDGRITRPAAAAALELLEIDAAGLD 267 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D R L ++A N+ GGPVG+ TI+ + E + +E++ EP++IQ+G++QRTP+GR+L Sbjct: 268 EMDKRMLRIMAENYRGGPVGLGTIAVAVGEESETLEEVHEPFLIQEGYLQRTPQGRVLTA 327 Query: 322 IAWQHLGI 329 + +G+ Sbjct: 328 KGYHAIGL 335 >gi|302517990|ref|ZP_07270332.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SPB78] gi|302426885|gb|EFK98700.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SPB78] Length = 356 Score = 312 bits (800), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 157/328 (47%), Positives = 220/328 (67%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L+ ED + + LRP+ L+EF GQ + L + ++AA+AR DHVL G PGL Sbjct: 18 LVDAGADTEDTAVEAALRPKDLDEFIGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 77 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+ R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+L Sbjct: 78 GKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 137 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF++D++VG+GP A ++ ++L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 138 YMAMEDFRVDVIVGKGPGATAIPLDLPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYAP 197 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+ ++ R A+L +A+ A EIA RSRGTPRIA RLLRRVRD+A+V IT EI Sbjct: 198 AELERVIHRSARLLDVAIDAAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGHITVEI 257 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AAL +D G D+LD L + + F GGPVG+ T+S + E R+ +E++ EP+++ Sbjct: 258 ASAALGVYEVDARGLDRLDRAVLEALLKLFSGGPVGLSTLSVAVGEERETVEEVAEPFLV 317 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++G + RTPRGR+ P AW HLG+ P Sbjct: 318 REGLLARTPRGRVATPAAWAHLGLAPPQ 345 >gi|333028332|ref|ZP_08456396.1| putative holliday junction DNA helicase RuvB [Streptomyces sp. Tu6071] gi|332748184|gb|EGJ78625.1| putative holliday junction DNA helicase RuvB [Streptomyces sp. Tu6071] Length = 356 Score = 312 bits (800), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 157/328 (47%), Positives = 220/328 (67%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L+ ED + + LRP+ L+EF GQ + L + ++AA+AR DHVL G PGL Sbjct: 18 LVDAGADTEDTAVEAALRPKDLDEFIGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 77 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+ R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+L Sbjct: 78 GKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 137 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF++D++VG+GP A ++ ++L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 138 YMAMEDFRVDVIVGKGPGATAIPLDLPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYAP 197 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+ ++ R A+L +A+ A EIA RSRGTPRIA RLLRRVRD+A+V IT EI Sbjct: 198 AELERVIHRSARLLDVAIDAAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGHITVEI 257 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AAL +D G D+LD L + + F GGPVG+ T+S + E R+ +E++ EP+++ Sbjct: 258 ASAALGVYEVDARGLDRLDRAVLEALLKLFSGGPVGLSTLSVAVGEERETVEEVAEPFLV 317 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++G + RTPRGR+ P AW HLG+ P Sbjct: 318 REGLLARTPRGRVATPAAWAHLGLAPPQ 345 >gi|317124982|ref|YP_004099094.1| Holliday junction DNA helicase subunit RuvB [Intrasporangium calvum DSM 43043] gi|315589070|gb|ADU48367.1| Holliday junction DNA helicase subunit RuvB [Intrasporangium calvum DSM 43043] Length = 367 Score = 312 bits (799), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 156/311 (50%), Positives = 212/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L++F GQ L + + AAK R DHVL GPPGLGKTTLA +VA EL Sbjct: 34 LRPRRLDDFPGQTRVRDQLGLVLRAAKGRGTPPDHVLLSGPPGLGKTTLAMIVASELEQP 93 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLA++L++L + +VLF+DEIHR+S EE+LY AMEDF++D+++G+G Sbjct: 94 IRITSGPAIQHAGDLASVLSSLAEGEVLFLDEIHRMSRAAEEMLYLAMEDFRVDVIIGKG 153 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + L FT++ ATTR GLL PL+DRFG L+FY+ DL TI+ R A+L GL Sbjct: 154 PGATAIPLELPPFTVVGATTRAGLLPAPLRDRFGFTGHLDFYDPSDLVTILHRSARLLGL 213 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ EI++RSRGTPRIA RLLRRVRD+A+V +T+ A AL +D+ G D Sbjct: 214 DADEDGIVEISVRSRGTPRIANRLLRRVRDWAQVHGEDRVTQAAARQALELFDVDERGLD 273 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + R FGGGPVG+ T++ + E D +E + EP+++++GF+ RTPRGR Sbjct: 274 RLDRAVLDALCRRFGGGPVGLSTLAVAVGEEPDTVETVAEPFLVREGFMVRTPRGRAASA 333 Query: 322 IAWQHLGIDIP 332 +AWQHLG+ P Sbjct: 334 LAWQHLGLTAP 344 >gi|172035419|ref|YP_001801920.1| Holliday junction DNA helicase RuvB [Cyanothece sp. ATCC 51142] gi|226698774|sp|B1WP72|RUVB_CYAA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|171696873|gb|ACB49854.1| Holliday junction DNA helicase [Cyanothece sp. ATCC 51142] Length = 354 Score = 312 bits (799), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 153/326 (46%), Positives = 221/326 (67%), Gaps = 1/326 (0%) Query: 4 REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 +E L QE ++ +RP + +E+ GQ + L + IEAAK R E +DH+L GP Sbjct: 16 KERLTKAETHQEQDNLEESIRPHSFDEYIGQKDLKDVLSIVIEAAKTRNEPMDHLLLYGP 75 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTT++ ++A +GVN + T+ P + + D+ LL +L+ D+LFIDEIHRL+ + E Sbjct: 76 PGLGKTTISLILASAMGVNCKITAAPALERPRDITGLLVSLKPGDILFIDEIHRLNRLTE 135 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LYPAMED++L++ +G+G +AR+ I L +FTL+ ATT+VG LT+PL+DRFG+ RL F Sbjct: 136 ELLYPAMEDYRLEITIGKGQAARTRSIPLPKFTLVGATTKVGSLTSPLRDRFGLIQRLKF 195 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 YE E+L I++R AKL ++T++ A EI RSRGTPRIA RLLRRVRD+ +V +IT Sbjct: 196 YEPEELALIIKRTAKLLNTSITEQGAAEIGRRSRGTPRIANRLLRRVRDYIQVKKFDSIT 255 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 +E+A AL +D G D D L + F GGPVG+E ++A E IE++ EP Sbjct: 256 QELAAEALDIYQVDPQGLDWTDRLILDTMITQFNGGPVGLEAVAAATGEDAKTIEEVYEP 315 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328 Y++Q G++ RTPRGR++ +A+QHLG Sbjct: 316 YLLQIGYLNRTPRGRVVTTVAYQHLG 341 >gi|239932398|ref|ZP_04689351.1| Holliday junction DNA helicase RuvB [Streptomyces ghanaensis ATCC 14672] gi|291440765|ref|ZP_06580155.1| holliday junction DNA helicase B [Streptomyces ghanaensis ATCC 14672] gi|291343660|gb|EFE70616.1| holliday junction DNA helicase B [Streptomyces ghanaensis ATCC 14672] Length = 356 Score = 311 bits (798), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 161/329 (48%), Positives = 224/329 (68%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E L+ + ED + + LRP+ L+EF GQ + L + + AA+AR DHVL G P Sbjct: 13 ERLVGASADGEDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 72 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+G R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE Sbjct: 73 GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LY AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E +L+ +V R A L + + E A EIA RSRGTPRIA RLLRRVRD+A+V IT+ Sbjct: 193 EPAELERVVHRSASLLDVEIDTEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGLITK 252 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EIA AAL +D G D+LD L + + FGGGPVG+ T++ + E R+ +E++ EP+ Sbjct: 253 EIAAAALAVYEVDARGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 312 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++G + RTPRGR+ P AW+HLG+ P Sbjct: 313 LVREGLLARTPRGRVATPAAWEHLGLTPP 341 >gi|297155805|gb|ADI05517.1| Holliday junction DNA helicase RuvB [Streptomyces bingchenggensis BCW-1] Length = 358 Score = 311 bits (798), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 157/329 (47%), Positives = 219/329 (66%), Gaps = 1/329 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L+ + ED + + LRP+ L EF GQ L + ++AA+ R DHVL G PGL Sbjct: 19 LVGADADGEDQAVEAALRPKDLGEFVGQERVREQLDLVLKAARQRGATADHVLLSGAPGL 78 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+G R TSGP I AGDLAA+L++L + +VLF+DEIHR+S EE+L Sbjct: 79 GKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRPAEEML 138 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 139 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAP 198 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+ ++ R A L + + E A EIA RSRGTPRIA RLLRRVRD+A+V +TREI Sbjct: 199 AELERVIHRSAGLLDVVIEAEGAGEIAGRSRGTPRIANRLLRRVRDYAQVKADGVVTREI 258 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL +D G D+LD LT + + FGGGPVG+ T++ + E R+ +E++ EP+++ Sbjct: 259 AARALAVYDVDGRGLDRLDRAVLTALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLV 318 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++G + RTPRGR+ P AW HLG+ P + Sbjct: 319 REGLLARTPRGRIATPAAWTHLGLTPPQQ 347 >gi|194246568|ref|YP_002004207.1| Holliday junction DNA helicase RuvB [Candidatus Phytoplasma mali] gi|254767435|sp|B3R0J0|RUVB_PHYMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|193806925|emb|CAP18354.1| Holliday junction DNA helicase B [Candidatus Phytoplasma mali] Length = 332 Score = 311 bits (798), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 148/304 (48%), Positives = 214/304 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP TL+E+ GQ L V+I+AAK R E+L+H+L GPPGLGKTTLA++VA+EL VN Sbjct: 21 LRPETLKEYMGQKNLKEILSVYIKAAKKRKESLEHLLIYGPPGLGKTTLAKIVAKELNVN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F+ TSG + ++GDL A L++L+ DVLFIDEIHRL +EEILY AMED+ LD+++G Sbjct: 81 FKITSGAAMERSGDLVATLSSLQMGDVLFIDEIHRLPKSIEEILYSAMEDYVLDIVLGTE 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +S++I+L FTLI ATTR G +++PL+DRFG+ ++LN+Y ++L+ I++R + + Sbjct: 141 NEKKSIRIDLPPFTLIGATTRFGDISSPLRDRFGLILKLNYYSEDELELIIKRTSLVYNT 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + ++ RSRGTPRIA RL RR+RDFA+V + I I++ AL +L IDK G D Sbjct: 201 KIDNNTLKKLVKRSRGTPRIANRLFRRIRDFADVYNKGLIDEHISEIALEKLTIDKNGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D YL + F GGPVGI+ I+A + E IED+ EPY++++G+I+RT RGR+ P Sbjct: 261 DADYTYLKSLIEKFEGGPVGIKNIAANIGEEVSTIEDIYEPYLLKEGYIKRTKRGRIATP 320 Query: 322 IAWQ 325 + ++ Sbjct: 321 LTFK 324 >gi|289428307|ref|ZP_06429994.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes J165] gi|289158456|gb|EFD06672.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes J165] Length = 340 Score = 311 bits (798), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 156/331 (47%), Positives = 219/331 (66%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M+R + E A+ + LRP L EF GQ L + + A+K+R DHVL G Sbjct: 1 MERSPVDPSAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+ R +SGP I AGDLAA+L++L +V F+DEIHR+S Sbjct: 61 PPGLGKTTLAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPA 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF++D++VG+GP A ++ I + FTL+ ATTR GLL PL+DRFG +L+ Sbjct: 121 EEMLYLAMEDFRVDVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLD 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +YE+ DL+ IV R A + G+ + + AA IA RSRGTPRIA RLLRRVRD+A+V H + Sbjct: 181 YYEVADLERIVTRSAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPV 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T + A+ AL +D +G D+LD L + FGGGPVG+ T++ + E +E++ E Sbjct: 241 TPQGAETALDLYEVDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 P++++ GF+ RTPRGR+ AW+HLG++ P Sbjct: 301 PFLVRLGFLMRTPRGRVATDRAWRHLGLEPP 331 >gi|254424230|ref|ZP_05037948.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7335] gi|196191719|gb|EDX86683.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7335] Length = 399 Score = 311 bits (798), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 155/312 (49%), Positives = 213/312 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + ++ GQ L + I+AAK+R E LDH+L GPPGLGKTT+A ++A+E+ V+ Sbjct: 68 IRPGAISDYIGQKALKEVLSIAIQAAKSRQEPLDHLLLYGPPGLGKTTMALILAQEMEVD 127 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P + + D+A LL NL+ DVLFIDEIHRLS + EEILYPAMED +LD+ +G+G Sbjct: 128 CKITTAPALERPRDIAGLLVNLKAGDVLFIDEIHRLSRVTEEILYPAMEDARLDITIGKG 187 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SAR+ I L FTL+ ATTRVG L +PL+DRFG+ RL FYE+++L IV R A + Sbjct: 188 QSARTRSIPLQPFTLVGATTRVGALASPLRDRFGLVQRLRFYEVDELTQIVLRTADVLKT 247 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V + A EIA R+RGTPRIA RLL+RVRD+ +V I ++ A AL +D G D Sbjct: 248 QVLADGAQEIARRARGTPRIANRLLKRVRDYVQVKQLGPINQQTAAEALELFNVDPCGLD 307 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R LT++ NF GGPVG++T++A E IE++ EPY++Q G++QRTPRGR++ Sbjct: 308 WTDRRLLTLMIENFNGGPVGLDTMAASTGEDPQTIEEVYEPYLLQIGYLQRTPRGRVVTS 367 Query: 322 IAWQHLGIDIPH 333 A +HLG +PH Sbjct: 368 AACKHLGYQVPH 379 >gi|54025665|ref|YP_119907.1| Holliday junction DNA helicase RuvB [Nocardia farcinica IFM 10152] gi|68715295|sp|Q5YTE8|RUVB_NOCFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|54017173|dbj|BAD58543.1| putative Holliday junction DNA helicase A subunit [Nocardia farcinica IFM 10152] Length = 357 Score = 311 bits (798), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 156/326 (47%), Positives = 223/326 (68%), Gaps = 1/326 (0%) Query: 8 LSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 +S + + D +I + LRP++L++F GQ L + + AK R DHVL GPPGLG Sbjct: 9 VSPSFLKSDGEIEASLRPKSLDDFIGQPRVREQLALVLRGAKQRGSTPDHVLLSGPPGLG 68 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KT++A ++A ELG R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY Sbjct: 69 KTSMAMIIAAELGTALRITSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPAEEMLY 128 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG ++FYE Sbjct: 129 LAMEDFRVDVVVGKGPGATSIPLDIAPFTLVGATTRSGALTGPLRDRFGFTGHMDFYEPG 188 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L I++R A++ G+ + +AA EIA RSRGTPRIA RLLRRVRD+AEV +T +A Sbjct: 189 ELLRILERSAQILGVRIETDAAAEIAGRSRGTPRIANRLLRRVRDYAEVRADGIVTLPVA 248 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 AAL +D +G D+LD L + R F GGPVG+ T++ + E +E++ EP++++ Sbjct: 249 RAALEVYDVDTLGLDRLDRAVLDALVRGFHGGPVGVSTLAVAVGEEATTVEEVCEPFLVR 308 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332 G + RTPRGR+ AW+HLG+ P Sbjct: 309 AGLVARTPRGRVATAAAWEHLGLVPP 334 >gi|295130718|ref|YP_003581381.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes SK137] gi|291376754|gb|ADE00609.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes SK137] Length = 340 Score = 311 bits (797), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 154/318 (48%), Positives = 215/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A+ + LRP L EF GQ L + + A+K+R DHVL GPPGLGKTTLA ++ Sbjct: 14 EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ R +SGP I AGDLAA+L++L +V F+DEIHR+S EE+LY AMEDF++ Sbjct: 74 ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A ++ I + FTL+ ATTR GLL PL+DRFG +L++YE+ DL+ IV R Sbjct: 134 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + + AA IA RSRGTPRIA RLLRRVRD+A+V H +T + A+ AL Sbjct: 194 SAGVIGVELAEGAANTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + FGGGPVG+ T++ + E +E++ EP++++ GF+ RTP Sbjct: 254 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW+HLG++ P Sbjct: 314 RGRVATDRAWRHLGLEPP 331 >gi|282853887|ref|ZP_06263224.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes J139] gi|289425355|ref|ZP_06427132.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes SK187] gi|282583340|gb|EFB88720.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes J139] gi|289154333|gb|EFD03021.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes SK187] Length = 340 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/318 (48%), Positives = 215/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A+ + LRP L EF GQ L + + A+K+R DHVL GPPGLGKTTLA ++ Sbjct: 14 EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ R +SGP I AGDLAA+L++L +V F+DEIHR+S EE+LY AMEDF++ Sbjct: 74 ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A ++ I + FTL+ ATTR GLL PL+DRFG +L++YE+ DL+ IV R Sbjct: 134 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + + AA IA RSRGTPRIA RLLRRVRD+A+V H +T + A+ AL Sbjct: 194 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + FGGGPVG+ T++ + E +E++ EP++++ GF+ RTP Sbjct: 254 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW+HLG++ P Sbjct: 314 RGRVATDRAWRHLGLEPP 331 >gi|291456790|ref|ZP_06596180.1| holliday junction DNA helicase RuvB [Bifidobacterium breve DSM 20213] gi|291382067|gb|EFE89585.1| holliday junction DNA helicase RuvB [Bifidobacterium breve DSM 20213] Length = 354 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 157/321 (48%), Positives = 216/321 (67%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+ + E LRP LE F GQ + L++F++AA+ R DH+L GPPGLGKT Sbjct: 24 SQPIGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VA EL V R TSGP + AGDLA++L++L+ +VLFIDEIHRL EE+LY A Sbjct: 84 TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDTGEVLFIDEIHRLPRAAEELLYIA 143 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY E+L Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + +++R A + G+ + + +A E+A+RSRGTPRIA RLLRRVRD+A V + Sbjct: 204 EKLIERSASVLGVNLDEGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVHPADVKE 263 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL ID G D+LD+ L I RNF GGPVG+ ++A + E + +E + EPY++++G Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323 Query: 309 FIQRTPRGRLLMPIAWQHLGI 329 F+ RTP+GR+ AWQHLGI Sbjct: 324 FMVRTPKGRVATEKAWQHLGI 344 >gi|326382128|ref|ZP_08203820.1| Holliday junction DNA helicase RuvB [Gordonia neofelifaecis NRRL B-59395] gi|326198858|gb|EGD56040.1| Holliday junction DNA helicase RuvB [Gordonia neofelifaecis NRRL B-59395] Length = 364 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 159/318 (50%), Positives = 216/318 (67%), Gaps = 1/318 (0%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D D SL RP L F GQ L++ + AA+AR DH+L GPPGLGKT+LA ++A Sbjct: 27 DLDASL-RPSDLGSFIGQPRVREQLELVLHAARARGRTPDHILLSGPPGLGKTSLAMIIA 85 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 E+G R TSGP + +AGDLAA+L+NL D DVLFIDEIHR++ EE+LY AMEDF++D Sbjct: 86 AEMGAAIRITSGPALERAGDLAAMLSNLVDGDVLFIDEIHRIARPAEEMLYLAMEDFRVD 145 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 ++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG + FYE +L +++R Sbjct: 146 VVVGKGPGATSIPLDVAPFTLVGATTRSGALTGPLRDRFGFTAHMEFYETGELVRVIKRS 205 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A + G+A+ D+AA E+A RSRGTPRIA RLLRRVRD+AEV + A AAL + Sbjct: 206 ATILGIAIDDDAASEVAGRSRGTPRIANRLLRRVRDYAEVRGDGRVDLAAARAALAVYDV 265 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D++G D+LD L + R FGGGPVG+ T++ + E +E++ EP++++ G I RTPR Sbjct: 266 DELGLDRLDRAVLGALVRGFGGGPVGVSTLAVAVGEEPATVEEVCEPFLVRAGMIARTPR 325 Query: 316 GRLLMPIAWQHLGIDIPH 333 GRL AW HLG+ P Sbjct: 326 GRLATASAWHHLGLTPPE 343 >gi|313807655|gb|EFS46142.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL087PA2] gi|313818692|gb|EFS56406.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL046PA2] gi|313820462|gb|EFS58176.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL036PA1] gi|313822732|gb|EFS60446.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL036PA2] gi|313825334|gb|EFS63048.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL063PA1] gi|314925071|gb|EFS88902.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL036PA3] gi|314960392|gb|EFT04494.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL002PA2] gi|314978568|gb|EFT22662.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL072PA2] gi|314987986|gb|EFT32077.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL005PA2] gi|314989796|gb|EFT33887.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL005PA3] gi|315084174|gb|EFT56150.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL027PA2] gi|315085517|gb|EFT57493.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL002PA3] gi|315088426|gb|EFT60402.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL072PA1] gi|327331805|gb|EGE73542.1| holliday junction DNA helicase RuvB [Propionibacterium acnes HL096PA3] gi|327443582|gb|EGE90236.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL013PA2] gi|328753337|gb|EGF66953.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL020PA1] Length = 342 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/318 (48%), Positives = 215/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A+ + LRP L EF GQ L + + A+K+R DHVL GPPGLGKTTLA ++ Sbjct: 16 EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ R +SGP I AGDLAA+L++L +V F+DEIHR+S EE+LY AMEDF++ Sbjct: 76 ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A ++ I + FTL+ ATTR GLL PL+DRFG +L++YE+ DL+ IV R Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + + AA IA RSRGTPRIA RLLRRVRD+A+V H +T + A+ AL Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + FGGGPVG+ T++ + E +E++ EP++++ GF+ RTP Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW+HLG++ P Sbjct: 316 RGRVATDRAWRHLGLEPP 333 >gi|313792006|gb|EFS40107.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL110PA1] gi|327453275|gb|EGE99929.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL092PA1] Length = 342 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/318 (48%), Positives = 215/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A+ + LRP L EF GQ L + + A+K+R DHVL GPPGLGKTTLA ++ Sbjct: 16 EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ R +SGP I AGDLAA+L++L +V F+DEIHR+S EE+LY AMEDF++ Sbjct: 76 ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A ++ I + FTL+ ATTR GLL PL+DRFG +L++YE+ DL+ IV R Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + + AA IA RSRGTPRIA RLLRRVRD+A+V H +T + A+ AL Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + FGGGPVG+ T++ + E +E++ EP++++ GF+ RTP Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW+HLG++ P Sbjct: 316 RGRVATDRAWRHLGLEPP 333 >gi|307155176|ref|YP_003890560.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7822] gi|306985404|gb|ADN17285.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7822] Length = 363 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 160/320 (50%), Positives = 220/320 (68%), Gaps = 1/320 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N E A+ S+ RPR L ++ GQ + LK+ IEAAK R EALDH+L GPPGLGKTT+ Sbjct: 45 NEETERAEDSI-RPRNLNDYIGQKDLKEVLKIAIEAAKVRKEALDHLLLYGPPGLGKTTM 103 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + ++A E+GVN + T+ P + + D+ LL NL+ D+LFIDEIHRL+ + EE+LYPAME Sbjct: 104 SLILASEMGVNCKITAAPALERPRDITGLLINLKPGDILFIDEIHRLNRMSEELLYPAME 163 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D +LD+ +G+G +A+ I L+ FTLI ATT++G LT+PL+DRFG+ RL FYE ++L Sbjct: 164 DHRLDITIGKGQAAKIRSIPLAPFTLIGATTKIGALTSPLRDRFGLIGRLRFYEADELLL 223 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R A + + +TDEAA IA RSRGTPRIA RLL+RVRD+ +V + IT+E+A AL Sbjct: 224 IVLRTATILKVQITDEAALVIARRSRGTPRIANRLLKRVRDYVQVKGLEVITQELAAEAL 283 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +L +D G D D L+ I F GGPVG+E ++A E IE++ EPY++Q G++ Sbjct: 284 DQLNVDSRGLDWTDRLVLSTIIEQFKGGPVGLEAVAAATGEDAKTIEEVYEPYLLQIGYL 343 Query: 311 QRTPRGRLLMPIAWQHLGID 330 RT RGR+ A+QHLG + Sbjct: 344 NRTSRGRIATEAAYQHLGYN 363 >gi|313764320|gb|EFS35684.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL013PA1] gi|313802044|gb|EFS43278.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL110PA2] gi|313812810|gb|EFS50524.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL025PA1] gi|313815858|gb|EFS53572.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL059PA1] gi|313827629|gb|EFS65343.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL063PA2] gi|313838865|gb|EFS76579.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL086PA1] gi|314915310|gb|EFS79141.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL005PA4] gi|314918139|gb|EFS81970.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL050PA1] gi|314920216|gb|EFS84047.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL050PA3] gi|314923583|gb|EFS87414.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL001PA1] gi|314931739|gb|EFS95570.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL067PA1] gi|314955640|gb|EFT00042.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL027PA1] gi|314958036|gb|EFT02139.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL002PA1] gi|314962662|gb|EFT06762.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL082PA1] gi|314966628|gb|EFT10727.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL082PA2] gi|314967472|gb|EFT11571.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL037PA1] gi|315077878|gb|EFT49929.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL053PA2] gi|315092023|gb|EFT63999.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL110PA4] gi|315092850|gb|EFT64826.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL060PA1] gi|315098668|gb|EFT70644.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL059PA2] gi|315101329|gb|EFT73305.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL046PA1] gi|315103630|gb|EFT75606.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL050PA2] gi|315108547|gb|EFT80523.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL030PA2] gi|327327452|gb|EGE69228.1| holliday junction DNA helicase RuvB [Propionibacterium acnes HL103PA1] gi|327450648|gb|EGE97302.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL087PA3] gi|327454014|gb|EGF00669.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL083PA2] gi|328753272|gb|EGF66888.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL025PA2] gi|328754066|gb|EGF67682.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL087PA1] Length = 342 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/318 (48%), Positives = 215/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A+ + LRP L EF GQ L + + A+K+R DHVL GPPGLGKTTLA ++ Sbjct: 16 EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ R +SGP I AGDLAA+L++L +V F+DEIHR+S EE+LY AMEDF++ Sbjct: 76 ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A ++ I + FTL+ ATTR GLL PL+DRFG +L++YE+ DL+ IV R Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + + AA IA RSRGTPRIA RLLRRVRD+A+V H +T + A+ AL Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + FGGGPVG+ T++ + E +E++ EP++++ GF+ RTP Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW+HLG++ P Sbjct: 316 RGRVATDRAWRHLGLEPP 333 >gi|37522688|ref|NP_926065.1| Holliday junction DNA helicase RuvB [Gloeobacter violaceus PCC 7421] gi|44888387|sp|Q7NGP9|RUVB_GLOVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|35213690|dbj|BAC91060.1| holliday junction DNA helicase [Gloeobacter violaceus PCC 7421] Length = 376 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 153/322 (47%), Positives = 217/322 (67%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + ED LRP+ L ++ GQ + + L + + AAK+R E+LDH+LF GPPGLGKT+++ Sbjct: 38 AHEDQHEESLRPKNLVDYAGQKDLKAVLGIAVAAAKSRGESLDHLLFYGPPGLGKTSISL 97 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ARE+ V T+ P + + D+A LL L D+LFIDEIHRL + EEILYPAMED+ Sbjct: 98 ILAREMNVQIHLTTAPALERPRDIAGLLVKLRRGDILFIDEIHRLPRLTEEILYPAMEDY 157 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+ +G+G +AR + L RFTLI ATTRVG L++PL+DRFG+ RL FY++E+L I+ Sbjct: 158 RLDITIGKGQNARITSVPLPRFTLIGATTRVGALSSPLRDRFGLIQRLRFYDVEELAGII 217 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A L +++ + A EIA R+RGTPRIA RLL+RVRD+A+V IT +A AAL Sbjct: 218 VRNAALLNISIDEPGAAEIARRARGTPRIANRLLKRVRDYAQVEGDGRITEPVACAALEL 277 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 +D G D D R L + ++ GGPVG+E+++A E IE++ EPY++Q G++ R Sbjct: 278 FEVDPRGLDWTDRRLLATLIEHYNGGPVGVESLAAATGEDTQTIEEVYEPYLMQIGYLLR 337 Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334 T RGR+ P A++HLG P R Sbjct: 338 TARGRMASPAAYRHLGYAPPQR 359 >gi|297243470|ref|ZP_06927402.1| Holliday junction resolvasome, helicase subunit [Gardnerella vaginalis AMD] gi|296888515|gb|EFH27255.1| Holliday junction resolvasome, helicase subunit [Gardnerella vaginalis AMD] Length = 353 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 156/311 (50%), Positives = 213/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP LE F GQ + L++F++AAK R A DH+L GPPGLGKTTLA +VA EL V Sbjct: 36 LRPHALEGFIGQPVLKAQLQLFLDAAKKRDVAPDHMLLAGPPGLGKTTLAMIVANELQVP 95 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLA++L+ L+ +VLFIDEIHRL EE+LY AMEDF++D+MVG+G Sbjct: 96 IRITSGPAIQHAGDLASILSALDAGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 155 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + L RFT++ ATTR G+L +PL+ RFG L+FY E+L+ +++R AK+ G+ Sbjct: 156 PGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHEELEKLIERSAKVLGI 215 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+AA E+++RSRGTPRIA RLLRRVRD+A V + E AL ID G D Sbjct: 216 RLVDQAARELSLRSRGTPRIANRLLRRVRDWAIVHDLSEVNHEDVVEALALYQIDTQGLD 275 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD+ L + F GGPVG+ ++A + E + +E + EPY++++GF+ RTP+GR+ Sbjct: 276 RLDIAVLKAMVCQFNGGPVGLNNLAAMVGEEAETVETVCEPYLVREGFLIRTPKGRVATS 335 Query: 322 IAWQHLGIDIP 332 AW+HLG P Sbjct: 336 KAWKHLGFKEP 346 >gi|313772297|gb|EFS38263.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL074PA1] gi|313810162|gb|EFS47883.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL083PA1] gi|313830493|gb|EFS68207.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL007PA1] gi|313833529|gb|EFS71243.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL056PA1] gi|314973493|gb|EFT17589.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL053PA1] gi|314976173|gb|EFT20268.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL045PA1] gi|314983805|gb|EFT27897.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL005PA1] gi|315080503|gb|EFT52479.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL078PA1] gi|315096040|gb|EFT68016.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL038PA1] gi|327326320|gb|EGE68110.1| holliday junction DNA helicase RuvB [Propionibacterium acnes HL096PA2] gi|327445786|gb|EGE92440.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL043PA2] gi|327448231|gb|EGE94885.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL043PA1] gi|328760718|gb|EGF74284.1| holliday junction DNA helicase RuvB [Propionibacterium acnes HL099PA1] Length = 342 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/318 (48%), Positives = 215/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A+ + LRP L EF GQ L + + A+K+R DHVL GPPGLGKTTLA ++ Sbjct: 16 EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ R +SGP I AGDLAA+L++L +V F+DEIHR+S EE+LY AMEDF++ Sbjct: 76 ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A ++ I + FTL+ ATTR GLL PL+DRFG +L++YE+ DL+ IV R Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + + AA IA RSRGTPRIA RLLRRVRD+A+V H +T + A+ AL Sbjct: 196 SAGVIGVELAEGAANTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + FGGGPVG+ T++ + E +E++ EP++++ GF+ RTP Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW+HLG++ P Sbjct: 316 RGRVATDRAWRHLGLEPP 333 >gi|320011893|gb|ADW06743.1| Holliday junction DNA helicase RuvB [Streptomyces flavogriseus ATCC 33331] Length = 361 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 157/328 (47%), Positives = 219/328 (66%), Gaps = 1/328 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L+ ED + + LRP+ L EF GQ + L + ++AA+AR DHVL G PGL Sbjct: 22 LVDAGADGEDTAVEAALRPKDLHEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 81 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+G R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+L Sbjct: 82 GKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 141 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 142 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAP 201 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+ ++ R A L +A+ A EIA RSRGTPRIA RLLRRVRD+A+V I R+I Sbjct: 202 TELERVIHRSAGLLDVAIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKAEGRIDRDI 261 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AAL +D G D+LD L + + FGGGPVG+ T++ + E R+ +E++ EP+++ Sbjct: 262 AAAALRVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLV 321 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 ++G + RTPRGR+ P AW HLG+ P Sbjct: 322 REGLLARTPRGRVATPAAWAHLGLVPPQ 349 >gi|270284161|ref|ZP_05965649.2| holliday junction DNA helicase RuvB [Bifidobacterium gallicum DSM 20093] gi|270277218|gb|EFA23072.1| holliday junction DNA helicase RuvB [Bifidobacterium gallicum DSM 20093] Length = 356 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 160/332 (48%), Positives = 222/332 (66%), Gaps = 5/332 (1%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MM L + VS E+ LRP L F GQ + L++F++AA+ R DH+L Sbjct: 19 MMSAAPLGNEPVSDEE-----LRPHVLAGFIGQPTLKAQLQLFLDAARKRDVPPDHILLA 73 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA +VA ELGV R TSGP I AGDLA++L++L+ +VLFIDEIHRL Sbjct: 74 GPPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRA 133 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L Sbjct: 134 AEELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHL 193 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FY ++L+ +++R A + GL + A+ ++++RSRGTPRIA RLLRRVRD+A V Sbjct: 194 DFYPADELRKLIERSAAVLGLELEQGASQQLSLRSRGTPRIANRLLRRVRDWAIVHDLPQ 253 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 + + AL ID G D+LD+ LT I + F GGPVG+ +SA + E + +E + Sbjct: 254 VRADDVCEALALYQIDTEGLDRLDIAVLTAIVKQFNGGPVGLNNLSAMVGEEAETVETVC 313 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++++GF+ RTP+GR+ AWQHLG+ +P Sbjct: 314 EPYLVREGFLIRTPKGRVATQKAWQHLGLTMP 345 >gi|224283111|ref|ZP_03646433.1| Holliday junction DNA helicase RuvB [Bifidobacterium bifidum NCIMB 41171] gi|311064394|ref|YP_003971119.1| holliday junction DNA helicase RuvB [Bifidobacterium bifidum PRL2010] gi|310866713|gb|ADP36082.1| RuvB Holliday junction DNA helicase [Bifidobacterium bifidum PRL2010] Length = 361 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 153/309 (49%), Positives = 217/309 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+ F GQ + L++F++AA+ R A DH+L GPPGLGKTTLA +VA EL V Sbjct: 39 LRPHALDGFVGQPRLKAQLQLFLDAARKRDTAPDHILLAGPPGLGKTTLAMIVANELEVP 98 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLA++L++L+ +VLFIDEIHRL EE+LY AMEDF++D+MVG+G Sbjct: 99 IRITSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 158 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + L RFT++ ATTR G+L +PL+ RFG L+FY ++L+ +++R + + G+ Sbjct: 159 PGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHDELEKLIERSSGVLGV 218 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ + AA E+A+RSRGTPRIA RLLRRVRD+A V + + + AAL ID G D Sbjct: 219 SLGEGAAAELALRSRGTPRIANRLLRRVRDWAIVHDLQVVDVDDVRAALALYQIDSEGLD 278 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD+ L I RNF GGPVG+ ++A + E + +E + EPY++++GF+ RTP+GR+ Sbjct: 279 RLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREGFLIRTPKGRVATA 338 Query: 322 IAWQHLGID 330 AW HLG++ Sbjct: 339 KAWSHLGLE 347 >gi|254383612|ref|ZP_04998962.1| holliday junction DNA helicase RuvB [Streptomyces sp. Mg1] gi|194342507|gb|EDX23473.1| holliday junction DNA helicase RuvB [Streptomyces sp. Mg1] Length = 353 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 152/308 (49%), Positives = 212/308 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ + L + ++AA+ R DHVL G PGLGKTTL+ ++A E+G Sbjct: 27 LRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLSMIIAAEMGAP 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 87 IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 146 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + L FTL+ ATTR GLL PL+DRFG + FY E+L+ ++ R A+L + Sbjct: 147 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPEELERVIHRSARLLDV 206 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA RSRGTPRIA RLLRRVRD+A+V ITRE+A AL +D G D Sbjct: 207 EIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITREVAGTALQVYEVDARGLD 266 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + + FGGGPVG+ T++ + E R+ +E++ EP+++++G + RTPRGR+ P Sbjct: 267 RLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 326 Query: 322 IAWQHLGI 329 AW HLG+ Sbjct: 327 AAWVHLGL 334 >gi|294790878|ref|ZP_06756036.1| holliday junction DNA helicase RuvB [Scardovia inopinata F0304] gi|294458775|gb|EFG27128.1| holliday junction DNA helicase RuvB [Scardovia inopinata F0304] Length = 367 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 158/318 (49%), Positives = 218/318 (68%), Gaps = 4/318 (1%) Query: 16 DADISL----LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 DAD S+ LRP TLE F GQ + + L +F+ AA+ R DH+L GPPGLGKTTLA Sbjct: 38 DADDSISDEELRPSTLETFIGQPQLKAQLGLFLNAARKRQVPPDHILLAGPPGLGKTTLA 97 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA EL V R TSGP I AGDLA++L++L++ +VLFIDEIHRL EE+LY AMED Sbjct: 98 MIVAHELDVPIRVTSGPAIQHAGDLASILSSLDEGEVLFIDEIHRLPRAAEELLYIAMED 157 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D+MVG+GP A S+ + L RFT++ ATTR G+L +PL+ RFG L++Y +L+ + Sbjct: 158 FRVDVMVGKGPGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDYYPTSELERL 217 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R + + L V D+AA E+A+RSRGTPR+A RLLRRVRD+ V TI + AL Sbjct: 218 IKRSSSVLDLTVDDQAAHELAVRSRGTPRVANRLLRRVRDWGIVHDLPTIDADSVIDALE 277 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 IDK G D+LD+ LT + + F GGPVG+ ++A + E + +E + EPY++++GF+ Sbjct: 278 LYQIDKEGLDRLDIAVLTALCKQFHGGPVGLNNLAAMVGEEAETVETVCEPYLVREGFLI 337 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTPRGR AW+HLG+ Sbjct: 338 RTPRGRAATERAWRHLGL 355 >gi|313140260|ref|ZP_07802453.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium bifidum NCIMB 41171] gi|313132770|gb|EFR50387.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium bifidum NCIMB 41171] Length = 355 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 153/309 (49%), Positives = 217/309 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+ F GQ + L++F++AA+ R A DH+L GPPGLGKTTLA +VA EL V Sbjct: 33 LRPHALDGFVGQPRLKAQLQLFLDAARKRDTAPDHILLAGPPGLGKTTLAMIVANELEVP 92 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLA++L++L+ +VLFIDEIHRL EE+LY AMEDF++D+MVG+G Sbjct: 93 IRITSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 152 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + L RFT++ ATTR G+L +PL+ RFG L+FY ++L+ +++R + + G+ Sbjct: 153 PGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHDELEKLIERSSGVLGV 212 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ + AA E+A+RSRGTPRIA RLLRRVRD+A V + + + AAL ID G D Sbjct: 213 SLGEGAAAELALRSRGTPRIANRLLRRVRDWAIVHDLQVVDVDDVRAALALYQIDSEGLD 272 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD+ L I RNF GGPVG+ ++A + E + +E + EPY++++GF+ RTP+GR+ Sbjct: 273 RLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREGFLIRTPKGRVATA 332 Query: 322 IAWQHLGID 330 AW HLG++ Sbjct: 333 KAWSHLGLE 341 >gi|332675563|gb|AEE72379.1| holliday junction ATP-dependent DNA helicase RuvB [Propionibacterium acnes 266] Length = 342 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/318 (48%), Positives = 215/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A+ + LRP L EF GQ L + + A+K+R DHVL GPPGLGKTTLA ++ Sbjct: 16 EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ R +SGP I AGDLAA+L++L +V F+DEIHR+S EE+LY AMEDF++ Sbjct: 76 ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRVSKPAEEMLYLAMEDFRV 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A ++ I + FTL+ ATTR GLL PL+DRFG +L++YE+ DL+ IV R Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + + AA IA RSRGTPRIA RLLRRVRD+A+V H +T + A+ AL Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + FGGGPVG+ T++ + E +E++ EP++++ GF+ RTP Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW+HLG++ P Sbjct: 316 RGRVATDRAWRHLGLEPP 333 >gi|328881166|emb|CCA54405.1| Holliday junction DNA helicase RuvB [Streptomyces venezuelae ATCC 10712] Length = 366 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 152/312 (48%), Positives = 213/312 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ + L + ++AA+ R DHVL G PGLGKTTL+ ++A E+ Sbjct: 34 LRPKDLSEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLSMIIAAEMNAP 93 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L++L++ ++LF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 94 IRITSGPAIQHAGDLAAILSSLQEGEILFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 153 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + L FTL+ ATTR GLL PL+DRFG + FY+ +L+ ++ R A L + Sbjct: 154 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYDPAELQRVIHRSAGLLDV 213 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA RSRGTPRIA RLLRRVRD+A+V ITREIA+AAL +D G D Sbjct: 214 EIDPAGAAEIAGRSRGTPRIANRLLRRVRDYAQVRADGVITREIAEAALSVYEVDGRGLD 273 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + + FGGGPVG+ T++ + E R+ +E++ EP+++++G + RTPRGR+ P Sbjct: 274 RLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 333 Query: 322 IAWQHLGIDIPH 333 AW HLG+ P Sbjct: 334 AAWAHLGLVPPQ 345 >gi|254430332|ref|ZP_05044035.1| Holliday junction DNA helicase RuvB [Cyanobium sp. PCC 7001] gi|197624785|gb|EDY37344.1| Holliday junction DNA helicase RuvB [Cyanobium sp. PCC 7001] Length = 361 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 160/306 (52%), Positives = 210/306 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L ++ GQ E L + IEA +AR EALDHVL GPPGLGKTT+A V+A ELGV Sbjct: 49 LRPRRLADYIGQGELKQVLGIAIEATRARGEALDHVLLYGPPGLGKTTMALVLAEELGVR 108 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TS P + + D+ LL NL+ RD+LFIDEIHRL+ + EE+LYPAMED +LDL VG+G Sbjct: 109 CRITSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLNRVAEELLYPAMEDGRLDLTVGQG 168 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+ + L FTL+ ATTR G L++PL+DRFG+ RL FY ++DL+ IV R A L L Sbjct: 169 TTARTRSLPLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGLDDLQAIVLRAAGLLAL 228 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA E+A R RGTPRIA RLLRRVRD A V+ ++ + AL +D G D Sbjct: 229 ELEADAALEVARRCRGTPRIANRLLRRVRDVAAVSGHSRVSAAVVRQALSLHRVDARGLD 288 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L+++ +GGGPVG++T++AGL E +E ++EPY++QQG +QRTPRGR+L Sbjct: 289 AHDRRLLSLMLEAYGGGPVGLDTLAAGLGEDPATLETVVEPYLLQQGLLQRTPRGRVLTE 348 Query: 322 IAWQHL 327 HL Sbjct: 349 AGRAHL 354 >gi|50842640|ref|YP_055867.1| Holliday junction DNA helicase B [Propionibacterium acnes KPA171202] gi|68715438|sp|Q6A8K7|RUVB_PROAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|50840242|gb|AAT82909.1| holliday junction DNA helicase RuvB [Propionibacterium acnes KPA171202] gi|315105679|gb|EFT77655.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL030PA1] Length = 342 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 154/318 (48%), Positives = 215/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A+ + LRP L EF GQ L + + A+K+R DHVL GPPGLGKTTLA ++ Sbjct: 16 EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ R +SGP I AGDLAA+L++L +V F+DEIHR+S EE+LY AMEDF++ Sbjct: 76 ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A ++ I + FTL+ ATTR GLL PL+DRFG +L++YE+ DL+ IV R Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + + AA IA RSRGTPRIA RLLRRVRD+A+V H +T + A+ AL Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + FGGGPVG+ T++ + E +E++ EP++++ GF+ RTP Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW+HLG++ P Sbjct: 316 RGRVPTDRAWRHLGLEPP 333 >gi|271967389|ref|YP_003341585.1| Holliday junction DNA helicase B [Streptosporangium roseum DSM 43021] gi|270510564|gb|ACZ88842.1| Holliday junction DNA helicase B [Streptosporangium roseum DSM 43021] Length = 352 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 154/311 (49%), Positives = 214/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEEF GQ L + +++A R DHVL G PGLGKTTL+ ++A EL V Sbjct: 23 LRPKRLEEFIGQARVREQLSLVLQSALRRNRPPDHVLMSGGPGLGKTTLSMIIATELSVP 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP + +AGDLAA+L+ L + +VLFIDEIHR++ EE+LY AMEDF++D++VG+G Sbjct: 83 LRITSGPALERAGDLAAILSTLSEGEVLFIDEIHRMARPAEEMLYLAMEDFRVDIVVGKG 142 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + ++ FTL+ ATTR GLL PL+DRFG + FY++ +L+ ++ R ++L GL Sbjct: 143 PGATAIPLEVAPFTLVGATTRAGLLPAPLRDRFGFVAHMEFYDVAELEQVLHRSSRLLGL 202 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EIA RSRGTPRIA RLLRRVRDFAEV +TR++A AAL +D G D Sbjct: 203 QLPGDAAHEIAGRSRGTPRIANRLLRRVRDFAEVRADGVVTRDVASAALNLYEVDAEGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + R FGGGPVG+ T++ + E + +E + EP++++QG + RTPRGR+ Sbjct: 263 RLDRAVLGALLRKFGGGPVGLSTLAVAVGEEPETVEVVAEPFLVRQGLLARTPRGRVATA 322 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 323 AAWVHLGLTPP 333 >gi|159904281|ref|YP_001551625.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9211] gi|159889457|gb|ABX09671.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9211] Length = 348 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 155/307 (50%), Positives = 218/307 (71%), Gaps = 2/307 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL EF GQ E L + ++AA R EALDHVL GPPGLGKTT+A V+A+ELGV Sbjct: 40 LRPKTLNEFVGQSELKEVLAISVKAALYRKEALDHVLLYGPPGLGKTTMALVLAQELGVK 99 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TS P + + D+ LL +L +++LF+DEIHRL+ EE+LYPA+EDF+LDL +G+G Sbjct: 100 CRITSAPALERPRDIVGLLMDLRSKELLFVDEIHRLTNSAEELLYPALEDFRLDLTIGKG 159 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++++ I L RFTL+ ATTR +++PL+DRFGI R FY ++DL+ IV+R A+ L Sbjct: 160 TTSKTRAIELPRFTLVGATTRPAAISSPLRDRFGITQRFGFYNLKDLQEIVKRSARFLEL 219 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRLAIDKMGF 260 ++ D+A+ EIA R RGTPRIA RLLRRVRDFA V + K I ++ D +L +D+ G Sbjct: 220 SMIDDASLEIARRCRGTPRIANRLLRRVRDFATVKCNKKLIDIDLVDESLKLHCVDERGL 279 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 DQ D R L+++A + GGGPVG++T++A L E +E ++EP+++Q GF+QRTPRGR+L Sbjct: 280 DQFDRRLLSLLA-SHGGGPVGLDTLAAALGEEPATLESVVEPFLLQIGFLQRTPRGRILT 338 Query: 321 PIAWQHL 327 +H+ Sbjct: 339 LQGQEHI 345 >gi|84496344|ref|ZP_00995198.1| Holliday junction DNA helicase RuvB [Janibacter sp. HTCC2649] gi|84383112|gb|EAP98993.1| Holliday junction DNA helicase RuvB [Janibacter sp. HTCC2649] Length = 392 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 211/311 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ L + +EAA+ R DH+L GPPGLGKTTLA +VA EL Sbjct: 62 LRPKRLSEFPGQTRVRDQLGLVLEAARRRGSVPDHILLSGPPGLGKTTLALIVAAELERP 121 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 122 IRITSGPAIQHAGDLAAVLSSLDEGEVLFLDEIHRMSRAAEEMLYLAMEDFRVDVIVGKG 181 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + LS FT++ ATTR GLL PL+DRFG L++Y+ DL TI++R A L G+ Sbjct: 182 PGATAIPLELSPFTVVGATTRSGLLPAPLRDRFGFTGHLDYYDASDLTTILRRSAGLLGV 241 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EIA RSRGTPRIA RLLRRVRD+A+V + + + A AAL +D G D Sbjct: 242 DANEAGITEIAGRSRGTPRIANRLLRRVRDWAQVHGSGHVDLDAAHAALRLFDVDDAGLD 301 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + R FGGGPVG+ T++ + E D +E + EPY++++GF+ RTPRGR Sbjct: 302 RLDRAVLDALCRRFGGGPVGLSTLAIAVGEESDTVETVAEPYLVREGFMVRTPRGRAASG 361 Query: 322 IAWQHLGIDIP 332 AW+HLG+ P Sbjct: 362 KAWRHLGLTPP 372 >gi|310287479|ref|YP_003938737.1| Holliday junction DNA helicase RuvB [Bifidobacterium bifidum S17] gi|309251415|gb|ADO53163.1| Holliday junction DNA helicase RuvB [Bifidobacterium bifidum S17] Length = 361 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 153/309 (49%), Positives = 217/309 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+ F GQ + L++F++AA+ R A DH+L GPPGLGKTTLA +VA EL V Sbjct: 39 LRPHALDGFVGQPRLKAQLQLFLDAARKRDTAPDHILLAGPPGLGKTTLAMIVANELEVP 98 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLA++L++L+ +VLFIDEIHRL EE+LY AMEDF++D+MVG+G Sbjct: 99 IRITSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 158 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + L RFT++ ATTR G+L +PL+ RFG L+FY ++L+ +++R + + G+ Sbjct: 159 PGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHDELEKLIERSSGVLGV 218 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ + AA E+A+RSRGTPRIA RLLRRVRD+A V + + + AAL ID G D Sbjct: 219 SLGEGAAAELALRSRGTPRIANRLLRRVRDWAIVHDLQVVDVDDVRAALALYQIDSEGLD 278 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD+ L I RNF GGPVG+ ++A + E + +E + EPY++++GF+ RTP+GR+ Sbjct: 279 RLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREGFLIRTPKGRVATA 338 Query: 322 IAWQHLGID 330 AW HLG++ Sbjct: 339 KAWSHLGLE 347 >gi|297198357|ref|ZP_06915754.1| Holliday junction DNA helicase RuvB [Streptomyces sviceus ATCC 29083] gi|197714414|gb|EDY58448.1| Holliday junction DNA helicase RuvB [Streptomyces sviceus ATCC 29083] Length = 356 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 160/329 (48%), Positives = 224/329 (68%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E L+ + +ED + + LRP+ L+EF GQ + L + + AA+AR DHVL G P Sbjct: 13 ERLVGASADREDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 72 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+G R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE Sbjct: 73 GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LY AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E +L+ ++ R A L + + E A EIA RSRGTPRIA RLLRRVRD+A+V ITR Sbjct: 193 EPAELERVIHRSAHLLDVEIGSEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGIITR 252 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +IA AAL +D G D+LD L + + FGGGPVG+ T++ + E R+ +E++ EP+ Sbjct: 253 DIAAAALKVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 312 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++G + RTPRGR+ P AW HLG+ P Sbjct: 313 LVREGLLARTPRGRVATPAAWAHLGLTPP 341 >gi|116620085|ref|YP_822241.1| Holliday junction DNA helicase RuvB [Candidatus Solibacter usitatus Ellin6076] gi|122255536|sp|Q02AG6|RUVB_SOLUE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116223247|gb|ABJ81956.1| Holliday junction DNA helicase subunit RuvB [Candidatus Solibacter usitatus Ellin6076] Length = 344 Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 167/330 (50%), Positives = 227/330 (68%), Gaps = 2/330 (0%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M DRE L+S + EDA + LRPR L +FTGQ + NL + IEAA+ R EA+DHVL Sbjct: 1 MPDRE-LISGDRQAEDAQFEVGLRPRRLADFTGQSKLKENLSIAIEAARMRGEAMDHVLL 59 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA ++A EL V F TSGPV+ K DL +L+N+ V FIDEIHRL Sbjct: 60 YGPPGLGKTTLASIIAEELQVQFTPTSGPVLQKKLDLTGILSNIRLHQVFFIDEIHRLLP 119 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 VEE+LY A+EDF++D++VG GP AR+ + + +FT I ATTR GL++ PL+ RFG+ +R Sbjct: 120 DVEEMLYSALEDFRVDILVGVGPGARTHSLPMPKFTAIGATTRQGLVSAPLRGRFGLVLR 179 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L+ Y E+LK IV+R A+L + + D AA EIA R RGTPRIA RLLRRVRD+A+V Sbjct: 180 LDPYNTEELKAIVKRSARLLTVEIEDGAAEEIARRCRGTPRIANRLLRRVRDYAQVRADG 239 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I +++A AL L +D+ G D++D + + I + GGPVG+ TI+A +SE + IE++ Sbjct: 240 RINQKVAQTALNLLDVDRYGLDEIDQKIMMTILEKYRGGPVGVNTIAASISEESETIEEV 299 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY+IQ GF+ RTPRGR+ +A+ + + Sbjct: 300 YEPYLIQLGFLNRTPRGRVATELAYDYFKV 329 >gi|46446742|ref|YP_008107.1| Holliday junction DNA helicase B [Candidatus Protochlamydia amoebophila UWE25] gi|67472424|sp|Q6MC67|RUVB_PARUW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|46400383|emb|CAF23832.1| probable holliday junction DNA helicase, ruvB [Candidatus Protochlamydia amoebophila UWE25] Length = 332 Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 154/324 (47%), Positives = 219/324 (67%), Gaps = 1/324 (0%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 + + N+++++ + LRP+ L +F GQ L+V I AA+ R E L H LF GPP Sbjct: 3 KNFIESNLNKQELSFEVPLRPQCLTDFVGQDSIRDRLEVHIGAARQRGEVLGHCLFSGPP 62 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLA ++++ + N TSGPVI KAGDLA +LT+L+ DVLFIDEIHRL+ VEE Sbjct: 63 GLGKTTLASILSKAMESNLVLTSGPVIEKAGDLAGILTSLKTGDVLFIDEIHRLNRSVEE 122 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 LY AMEDF LDLM+ GP+ARS+++ L++FTL ATTR+GLL+ PL+ RF RL +Y Sbjct: 123 YLYQAMEDFALDLMIDSGPNARSIQVKLNQFTLAGATTRLGLLSEPLRSRFAFTCRLEYY 182 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 + L+ I+ R +++ + + EAA EIA RSRGTPR+A LLR VRDFA++ I Sbjct: 183 DPMILQKILLRTSRILNVKIDSEAALEIAKRSRGTPRVANHLLRWVRDFAQIKANNYIDL 242 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +A+ AL L+ID+ G D++D + L + ++ GGPVGI I+A + E +E++ EPY Sbjct: 243 SVANRALTMLSIDEKGLDEMDKKMLQTMIDHYSGGPVGINAIAASIGEEPSTVEEVYEPY 302 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327 +I QG ++RTPRGR + + +QH+ Sbjct: 303 LILQGLLKRTPRGREVTSLGYQHI 326 >gi|308271855|emb|CBX28463.1| Holliday junction ATP-dependent DNA helicase ruvB [uncultured Desulfobacterium sp.] Length = 352 Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 153/312 (49%), Positives = 207/312 (66%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 + +I LRP ++ ++ GQ E LK+ I+AAK R E +DHVL GPPGLGKTTLA ++A Sbjct: 33 EPEILSLRPESMSDYIGQKEVVETLKIAIQAAKQRGEPIDHVLLHGPPGLGKTTLAHIIA 92 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 E G N TSGP + K GDL +LT+LE+ D+LFIDEIHR+ +VEE +YPAMEDF +D Sbjct: 93 NETGANLTVTSGPALEKGGDLVGILTHLEEGDILFIDEIHRIPKVVEEFMYPAMEDFAID 152 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 + +G +ARS K L F L+ ATTRVGLL++PL+DRFGI L+FY DL IV R Sbjct: 153 FVFDKGVNARSHKYRLKHFVLVGATTRVGLLSSPLRDRFGIFRTLDFYTESDLMIIVSRS 212 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 A L + + ++AA E++ RSRGTPRI RLL+RVRD+A+V IT++ AL + Sbjct: 213 ADLLKIKIEEDAAYELSRRSRGTPRIVNRLLKRVRDYAQVRGDGIITKKTVQEALALEGV 272 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D+ G LD RYL + + GGPVG+E I+A L E D + D++EP++++ G I RT Sbjct: 273 DEKGLTNLDCRYLKTVIEFYNGGPVGVEAIAATLQEESDTLVDVVEPFLLKIGLIMRTSS 332 Query: 316 GRLLMPIAWQHL 327 GR A++HL Sbjct: 333 GRKASEEAYKHL 344 >gi|312132690|ref|YP_004000029.1| ruvb [Bifidobacterium longum subsp. longum BBMN68] gi|317483239|ref|ZP_07942234.1| Holliday junction DNA helicase RuvB [Bifidobacterium sp. 12_1_47BFAA] gi|322689207|ref|YP_004208941.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp. infantis 157F] gi|322691273|ref|YP_004220843.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp. longum JCM 1217] gi|291516875|emb|CBK70491.1| Holliday junction DNA helicase subunit RuvB [Bifidobacterium longum subsp. longum F8] gi|311773648|gb|ADQ03136.1| RuvB [Bifidobacterium longum subsp. longum BBMN68] gi|316915308|gb|EFV36735.1| Holliday junction DNA helicase RuvB [Bifidobacterium sp. 12_1_47BFAA] gi|320456129|dbj|BAJ66751.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp. longum JCM 1217] gi|320460543|dbj|BAJ71163.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp. infantis 157F] Length = 354 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 157/321 (48%), Positives = 216/321 (67%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+ + E LRP LE F GQ + L++F++AA+ R DH+L GPPGLGKT Sbjct: 24 SQPIGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VA EL V R TSGP + AGDLA++L++L+ +VLFIDEIHRL EE+LY A Sbjct: 84 TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY E+L Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + +++R A + G+ + +A E+A+RSRGTPRIA RLLRRVRD+A V + + Sbjct: 204 EKLIERSANVLGVNLDAGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL ID G D+LD+ L I RNF GGPVG+ ++A + E + +E + EPY++++G Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323 Query: 309 FIQRTPRGRLLMPIAWQHLGI 329 F+ RTP+GR+ AWQHLGI Sbjct: 324 FMIRTPKGRVATEKAWQHLGI 344 >gi|313837772|gb|EFS75486.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL037PA2] gi|314927346|gb|EFS91177.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL044PA1] gi|314972424|gb|EFT16521.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL037PA3] Length = 342 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 154/318 (48%), Positives = 214/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A+ + LRP L EF GQ L + + A+K+R A DHVL GPPGLGKTTLA ++ Sbjct: 16 EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTAPDHVLLSGPPGLGKTTLAMII 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ R +SGP I AGDLAA+L++L +V F+DEIHR+S EE+LY AMEDF++ Sbjct: 76 ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A ++ I++ FTL+ ATTR GLL PL+DRFG +L++YE+ DL+ IV R Sbjct: 136 DVVVGKGPGATAIPIDIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + D A IA RSRGTPRIA RLLRRVRD+A+V +T A AL Sbjct: 196 SAGVIGVELADGTAHTIASRSRGTPRIANRLLRRVRDWADVNRESPVTPHGAQTALDLYE 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L+ + FGGGPVG+ T++ + E +E++ EP++++ GF+ RTP Sbjct: 256 VDPLGLDRLDRAVLSAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW+HLG++ P Sbjct: 316 RGRVATDRAWRHLGLEPP 333 >gi|296454194|ref|YP_003661337.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp. longum JDM301] gi|296183625|gb|ADH00507.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp. longum JDM301] Length = 354 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 157/321 (48%), Positives = 216/321 (67%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+ + E LRP LE F GQ + L++F++AA+ R DH+L GPPGLGKT Sbjct: 24 SQPIGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VA EL V R TSGP + AGDLA++L++L+ +VLFIDEIHRL EE+LY A Sbjct: 84 TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY E+L Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + +++R A + G+ + +A E+A+RSRGTPRIA RLLRRVRD+A V + + Sbjct: 204 EKLIERSANVLGVNLDAGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL ID G D+LD+ L I RNF GGPVG+ ++A + E + +E + EPY++++G Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323 Query: 309 FIQRTPRGRLLMPIAWQHLGI 329 F+ RTP+GR+ AWQHLGI Sbjct: 324 FMIRTPKGRVATEKAWQHLGI 344 >gi|320093777|ref|ZP_08025624.1| crossover junction ATP-dependent DNA helicase RuvB [Actinomyces sp. oral taxon 178 str. F0338] gi|319979278|gb|EFW10774.1| crossover junction ATP-dependent DNA helicase RuvB [Actinomyces sp. oral taxon 178 str. F0338] Length = 349 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 160/318 (50%), Positives = 215/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A + LRP+ L EF GQ L++ ++AA+ R + DHVL GPPGLGKTTLA ++ Sbjct: 24 ERAAEAALRPKRLAEFVGQRVVRGQLQLVLDAARGRGASPDHVLLAGPPGLGKTTLAMII 83 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+G + R TSGP I AGDLAA+L+ L++ D+LFIDEIHRL+ EE+LY AMEDF++ Sbjct: 84 AAEMGTSLRLTSGPAIQHAGDLAAILSGLQEGDILFIDEIHRLARTAEEMLYLAMEDFRV 143 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A S+ + L RFT + ATTR GLL PL+DRFG L FYE ++L+ +V R Sbjct: 144 DVVVGKGPGATSIPLTLPRFTAVGATTRSGLLPAPLRDRFGFTAHLEFYETDELEQVVAR 203 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L G + + AA EIA RSRGTPRIA RLLRRV D+A+V T A AAL Sbjct: 204 SASLLGAPLGEGAAHEIASRSRGTPRIANRLLRRVVDYAQVHGDGAATLGAARAALALFE 263 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + + F GGPVG+ T+S + E + +E + EPY++++GF+ RT Sbjct: 264 VDPLGLDRLDRAVLEAVCKRFAGGPVGLTTLSVTIGEEAETVETVAEPYLVREGFLVRTN 323 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ P AW+HLG+ P Sbjct: 324 RGRMATPRAWEHLGLAPP 341 >gi|255327193|ref|ZP_05368268.1| holliday junction DNA helicase RuvB [Rothia mucilaginosa ATCC 25296] gi|255295811|gb|EET75153.1| holliday junction DNA helicase RuvB [Rothia mucilaginosa ATCC 25296] Length = 367 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 153/312 (49%), Positives = 210/312 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L++F GQ L + +EA+K R + DHVL GPPGLGKTTLA ++A E+ Sbjct: 53 LRPKSLDDFVGQRRVRQQLSLVLEASKMRGRSADHVLLSGPPGLGKTTLAMIIAAEMEAP 112 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I +GDLAA+L++L +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 113 LRITSGPAIQHSGDLAAILSSLTPGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 172 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A S+ + L +FTL+ ATTR GLL PL+DRFG L FY +E+L+ +++R A L + Sbjct: 173 AGATSIPLELPQFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVEELELVLRRSAGLMDM 232 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T E EIA RSRGTPRIA RLLRRVRD+A V I A AL +D G D Sbjct: 233 QITSEGFTEIAGRSRGTPRIANRLLRRVRDWALVNGVDRINATDAATALDMYEVDSRGLD 292 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + FGGGPVG+ T++ + E + +E + EPY++++G I RTPRGR+ +P Sbjct: 293 RLDRAVLEALIHKFGGGPVGLSTLAIAVGEETETVETVAEPYLVREGLIGRTPRGRVALP 352 Query: 322 IAWQHLGIDIPH 333 AW+HLG++ P Sbjct: 353 AAWEHLGLEAPE 364 >gi|149918263|ref|ZP_01906755.1| hypothetical protein PPSIR1_11660 [Plesiocystis pacifica SIR-1] gi|149821023|gb|EDM80430.1| hypothetical protein PPSIR1_11660 [Plesiocystis pacifica SIR-1] Length = 361 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 163/312 (52%), Positives = 210/312 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+ +E+ GQ + L+V+++AAK R E LDHVL GPPGLGKTTLAQ+VA E+GV Sbjct: 30 LRPRSFDEYVGQRALITKLRVYVQAAKQRDEPLDHVLLHGPPGLGKTTLAQIVAHEMGVV 89 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +TSGP I G LA LLT L + +VLFIDE+HR+S VEE LY AMED ++D+ VGEG Sbjct: 90 LHTTSGPAIEHKGVLAGLLTGLGEGEVLFIDEVHRMSPTVEESLYSAMEDRRIDIPVGEG 149 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +A + I+L+ FTL+ ATTR LL+ PL+DRF I L FY E+L IV+R A L GL Sbjct: 150 SAAITHSISLAPFTLVGATTRTALLSAPLRDRFHIVEGLRFYTDEELAAIVERSASLLGL 209 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A EI RSRGTPRIA RL RRVRDF++VA + IT A L L +D +G + Sbjct: 210 PASPEGALEIGRRSRGTPRIANRLTRRVRDFSQVAGHERITAADAARFLDTLEVDDLGLN 269 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D LT + F GGPVG++ ++A + PRD IED+ EP+++Q+G + RTPRGR+ Sbjct: 270 VSDRSILTTMLELFSGGPVGVDALAASVGMPRDTIEDVHEPFLLQRGLVVRTPRGRMTTA 329 Query: 322 IAWQHLGIDIPH 333 A HLG PH Sbjct: 330 KAADHLGRPDPH 341 >gi|328907431|gb|EGG27197.1| Holliday junction DNA helicase RuvB [Propionibacterium sp. P08] Length = 340 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 154/318 (48%), Positives = 214/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A+ + LRP L EF GQ L + + A+K+R A DHVL GPPGLGKTTLA ++ Sbjct: 14 EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTAPDHVLLSGPPGLGKTTLAMII 73 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ R +SGP I AGDLAA+L++L +V F+DEIHR+S EE+LY AMEDF++ Sbjct: 74 ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A ++ I++ FTL+ ATTR GLL PL+DRFG +L++YE+ DL+ IV R Sbjct: 134 DVVVGKGPGATAIPIDIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 193 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + D A IA RSRGTPRIA RLLRRVRD+A+V +T A AL Sbjct: 194 SAGVIGVELADGTAHTIASRSRGTPRIANRLLRRVRDWADVNRESPVTPHGAQTALDLYE 253 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L+ + FGGGPVG+ T++ + E +E++ EP++++ GF+ RTP Sbjct: 254 VDPLGLDRLDRAVLSAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 313 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW+HLG++ P Sbjct: 314 RGRVATDRAWRHLGLEPP 331 >gi|282864187|ref|ZP_06273243.1| Holliday junction DNA helicase RuvB [Streptomyces sp. ACTE] gi|282560674|gb|EFB66220.1| Holliday junction DNA helicase RuvB [Streptomyces sp. ACTE] Length = 361 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 158/329 (48%), Positives = 219/329 (66%), Gaps = 1/329 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L+ ED + + LRP+ L EF GQ + L + ++AA AR DHVL G PGL Sbjct: 22 LVDGGADGEDTAVEAALRPKDLGEFIGQEKVREQLDLVLKAALARGATADHVLLSGAPGL 81 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A E+ R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+L Sbjct: 82 GKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 141 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 142 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYAP 201 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+ +V R A L +A+ + A EIA RSRGTPRIA RLLRRVRD+A+V I REI Sbjct: 202 TELERVVHRSAGLLDVAIDTDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKAEGRIDREI 261 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AAL +D+ G D+LD L + + FGGGPVG+ T++ + E R+ +E++ EP+++ Sbjct: 262 AAAALRVYEVDERGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLV 321 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++G + RTPRGR+ P AW HLG+ P Sbjct: 322 REGLLARTPRGRVATPAAWAHLGLVPPQH 350 >gi|306822726|ref|ZP_07456104.1| crossover junction ATP-dependent DNA helicase RuvB [Bifidobacterium dentium ATCC 27679] gi|309801011|ref|ZP_07695143.1| Holliday junction DNA helicase RuvB [Bifidobacterium dentium JCVIHMP022] gi|304554271|gb|EFM42180.1| crossover junction ATP-dependent DNA helicase RuvB [Bifidobacterium dentium ATCC 27679] gi|308222547|gb|EFO78827.1| Holliday junction DNA helicase RuvB [Bifidobacterium dentium JCVIHMP022] Length = 362 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 155/318 (48%), Positives = 217/318 (68%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V E LRP L+ F GQ + L++F++AA+ R DH+L GPPGLGKTTLA Sbjct: 32 VGNEPVSDEELRPHILDGFIGQPRLKAQLQLFLDAARKREVPPDHILLAGPPGLGKTTLA 91 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA ELGV R TSGP I AGDLA++L++L+ +VLFIDEIHRL EE+LY AMED Sbjct: 92 MIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 151 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY ++L+ + Sbjct: 152 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHDELEKL 211 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R + + G+ + + +A ++AMRSRGTPRIA RLLRRVRD+A V +++ E AL Sbjct: 212 IERSSAVLGVLLEEGSAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLESVHPEDVKQALA 271 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 ID G D+LD+ L I NF GGPVG+ +SA + E + +E + EPY++++GF+ Sbjct: 272 LYQIDTEGLDRLDIAVLKAIVTNFSGGPVGLNNLSAMVGEESETVETVCEPYLVREGFLI 331 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTP+GR+ AW+HLG+ Sbjct: 332 RTPKGRVATRKAWEHLGL 349 >gi|158522216|ref|YP_001530086.1| Holliday junction DNA helicase B [Desulfococcus oleovorans Hxd3] gi|259495663|sp|A8ZUH7|RUVB_DESOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|158511042|gb|ABW68009.1| Holliday junction DNA helicase RuvB [Desulfococcus oleovorans Hxd3] Length = 343 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 156/324 (48%), Positives = 211/324 (65%), Gaps = 2/324 (0%) Query: 8 LSRNVSQEDA--DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++R+ ++ED D+ LRP E++ GQ L++ I AAK R+E L+HVLF GPPGL Sbjct: 16 VTRHETEEDTGDDLFSLRPCDFEDYVGQDRTVETLRIAIAAAKQRSEPLEHVLFHGPPGL 75 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A E+G + TSGP + K GDL +LT+L+ D+LF+DEIHRL EE L Sbjct: 76 GKTTLAHIIAAEMGTSLTITSGPALEKGGDLIGMLTHLKRGDILFVDEIHRLPRTTEEFL 135 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 YPAMEDF +D + +G AR + L++F L+ ATTRVGLL+ PL+DRFGI + +FY Sbjct: 136 YPAMEDFAVDFVFDKGIHARCHRYRLNQFVLVGATTRVGLLSAPLRDRFGIFRKFDFYSR 195 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +DL IV R A L GL + + E+A RSRGTPRI RLL+RVRD+ +V H IT Sbjct: 196 QDLARIVSRSAALMGLTIDETCTMELARRSRGTPRIVNRLLKRVRDYVQVRHGGVITVSA 255 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 D AL +D+ G LD YL I + +GGGPVGIE I A L E D + D++EP+++ Sbjct: 256 IDDALALEGVDEKGLTGLDRSYLETIIQYYGGGPVGIEAIGATLQEETDTLVDVVEPFLL 315 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 +G +QRT GR A++HLG+ Sbjct: 316 AEGLLQRTSSGRKATEAAYRHLGV 339 >gi|283457994|ref|YP_003362601.1| holliday junction resolvasome, helicase subunit [Rothia mucilaginosa DY-18] gi|283134016|dbj|BAI64781.1| holliday junction resolvasome, helicase subunit [Rothia mucilaginosa DY-18] Length = 382 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 153/312 (49%), Positives = 210/312 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L++F GQ L + +EA+K R + DHVL GPPGLGKTTLA ++A E+ Sbjct: 68 LRPKSLDDFVGQRRVRQQLSLVLEASKMRGRSADHVLLSGPPGLGKTTLAMIIAAEMDAP 127 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I +GDLAA+L++L +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 128 LRITSGPAIQHSGDLAAILSSLTPGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 187 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A S+ + L +FTL+ ATTR GLL PL+DRFG L FY +E+L+ +++R A L + Sbjct: 188 AGATSIPLELPQFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVEELELVLRRSAGLMDM 247 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T E EIA RSRGTPRIA RLLRRVRD+A V I A AL +D G D Sbjct: 248 QITSEGFTEIAGRSRGTPRIANRLLRRVRDWALVNGVDRINARDAATALDMYEVDSRGLD 307 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + FGGGPVG+ T++ + E + +E + EPY++++G I RTPRGR+ +P Sbjct: 308 RLDRAVLESLIHKFGGGPVGLSTLAIAVGEETETVETVAEPYLVREGLIGRTPRGRVALP 367 Query: 322 IAWQHLGIDIPH 333 AW+HLG++ P Sbjct: 368 AAWEHLGMEAPE 379 >gi|119025823|ref|YP_909668.1| Holliday junction DNA helicase RuvB [Bifidobacterium adolescentis ATCC 15703] gi|171473027|sp|A1A1K3|RUVB_BIFAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|118765407|dbj|BAF39586.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium adolescentis ATCC 15703] Length = 362 Score = 309 bits (792), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 157/318 (49%), Positives = 216/318 (67%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V E LRP LE F GQ + L++F++AA+ R DH+L GPPGLGKTTLA Sbjct: 32 VGNEPVSDEELRPHILEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKTTLA 91 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA EL V R TSGP I AGDLA++L++L+ +VLFIDEIHRL EE+LY AMED Sbjct: 92 MIVANELEVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 151 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY E+L+ + Sbjct: 152 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 211 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R + + G+ + D AA ++AMRSRGTPRIA RLLRRVRD+A V +++ + AL Sbjct: 212 IERSSAVLGIQLEDGAARQLAMRSRGTPRIANRLLRRVRDWAIVHDLESVRPDDVKEALA 271 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 ID G D+LD+ L I NF GGPVG+ ++A + E + +E + EPY++++GF+ Sbjct: 272 LYQIDTEGLDRLDIAVLKAIVTNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREGFLI 331 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTP+GR+ AW+HLGI Sbjct: 332 RTPKGRVATRKAWEHLGI 349 >gi|307326762|ref|ZP_07605954.1| Holliday junction DNA helicase RuvB [Streptomyces violaceusniger Tu 4113] gi|306887525|gb|EFN18519.1| Holliday junction DNA helicase RuvB [Streptomyces violaceusniger Tu 4113] Length = 362 Score = 309 bits (791), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 153/311 (49%), Positives = 212/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ L + ++AA+ R DHVL G PGLGKTTL+ ++A E+ Sbjct: 38 LRPKDLGEFVGQERVREQLDLVLKAARQRGGTADHVLLSGAPGLGKTTLSMIIAAEMAAP 97 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L++L + +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 98 IRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 157 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + L FTL+ ATTR GLL PL+DRFG + FY +L+ ++ R A L + Sbjct: 158 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSAGLLDV 217 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A EIA RSRGTPRIA RLLRRVRD+A+V ITREIA +AL +D+ G D Sbjct: 218 TIEAEGASEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITREIAASALAVYDVDERGLD 277 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L+ + + FGGGPVG+ T++ + E R+ +E++ EP+++++G + RTPRGR+ P Sbjct: 278 RLDRAVLSALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRIGTP 337 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 338 AAWAHLGLTPP 348 >gi|283456063|ref|YP_003360627.1| Holliday junction DNA helicase ruvB [Bifidobacterium dentium Bd1] gi|283102697|gb|ADB09803.1| Holliday junction DNA helicase ruvB [Bifidobacterium dentium Bd1] Length = 357 Score = 309 bits (791), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 155/318 (48%), Positives = 217/318 (68%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V E LRP L+ F GQ + L++F++AA+ R DH+L GPPGLGKTTLA Sbjct: 27 VGNEPVSDEELRPHILDGFIGQPRLKAQLQLFLDAARKREVPPDHILLAGPPGLGKTTLA 86 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA ELGV R TSGP I AGDLA++L++L+ +VLFIDEIHRL EE+LY AMED Sbjct: 87 MIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 146 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY ++L+ + Sbjct: 147 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHDELEKL 206 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R + + G+ + + +A ++AMRSRGTPRIA RLLRRVRD+A V +++ E AL Sbjct: 207 IERSSVVLGVLLEEGSAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLESVHPEDVKQALA 266 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 ID G D+LD+ L I NF GGPVG+ +SA + E + +E + EPY++++GF+ Sbjct: 267 LYQIDTEGLDRLDIAVLKAIVTNFSGGPVGLNNLSAMVGEESETVETVCEPYLVREGFLI 326 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTP+GR+ AW+HLG+ Sbjct: 327 RTPKGRVATRKAWEHLGL 344 >gi|189499557|ref|YP_001959027.1| Holliday junction DNA helicase RuvB [Chlorobium phaeobacteroides BS1] gi|189494998|gb|ACE03546.1| Holliday junction DNA helicase RuvB [Chlorobium phaeobacteroides BS1] Length = 338 Score = 309 bits (791), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 161/311 (51%), Positives = 216/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L++F+GQ N++VFI AA+ R EALDHVLF GPPGLGKTTLA ++A ELG Sbjct: 16 IRPLLLDDFSGQKRLTDNMRVFITAARQRGEALDHVLFSGPPGLGKTTLAHIIASELGGG 75 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + +SGP++ K G+LA +LT+L DVLFIDEIHRL+ VEE LY AMEDF++D+++ G Sbjct: 76 IKISSGPLLDKPGNLAGILTSLNKGDVLFIDEIHRLTPAVEEYLYSAMEDFRIDILLESG 135 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR+V++ L FTL+ ATTR G+LT+PL+ RFGI RL++Y E L+ I+ R A + G+ Sbjct: 136 PSARAVQLKLEPFTLVGATTRAGMLTSPLRARFGISNRLDYYSPEVLERIIVRTATILGV 195 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + AA EIA RSRGTPRIA RLL+R RDF +VA+A TIT E+A L L ID G D Sbjct: 196 DIDGNAAVEIARRSRGTPRIANRLLKRARDFTQVANAATITAELARKTLDALEIDDDGLD 255 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + + F GGPVGI +++ + E ++ IE++ EPY+IQ GFI RT RGR+ Sbjct: 256 DMDKKIMLTLIEKFNGGPVGISSLAVSVGEEQETIEEVYEPYLIQTGFIARTSRGRVATK 315 Query: 322 IAWQHLGIDIP 332 A+ P Sbjct: 316 NAYMKFTGSYP 326 >gi|171742915|ref|ZP_02918722.1| hypothetical protein BIFDEN_02032 [Bifidobacterium dentium ATCC 27678] gi|171278529|gb|EDT46190.1| hypothetical protein BIFDEN_02032 [Bifidobacterium dentium ATCC 27678] Length = 362 Score = 309 bits (791), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 155/318 (48%), Positives = 217/318 (68%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V E LRP L+ F GQ + L++F++AA+ R DH+L GPPGLGKTTLA Sbjct: 32 VGNEPVSDEELRPHILDGFIGQPRLKAQLQLFLDAARKREVPPDHILLAGPPGLGKTTLA 91 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA ELGV R TSGP I AGDLA++L++L+ +VLFIDEIHRL EE+LY AMED Sbjct: 92 MIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 151 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY ++L+ + Sbjct: 152 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHDELEKL 211 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R + + G+ + + +A ++AMRSRGTPRIA RLLRRVRD+A V +++ E AL Sbjct: 212 IERSSVVLGVLLEEGSAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLESVHPEDVKQALA 271 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 ID G D+LD+ L I NF GGPVG+ +SA + E + +E + EPY++++GF+ Sbjct: 272 LYQIDTEGLDRLDIAVLKAIVTNFSGGPVGLNNLSAMVGEESETVETVCEPYLVREGFLI 331 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTP+GR+ AW+HLG+ Sbjct: 332 RTPKGRVATRKAWEHLGL 349 >gi|329296287|ref|ZP_08253623.1| Holliday junction DNA helicase RuvB [Plautia stali symbiont] Length = 266 Score = 309 bits (791), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 154/265 (58%), Positives = 203/265 (76%), Gaps = 1/265 (0%) Query: 1 MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ++E++ +RP+ L E+ GQ + + +FI+AAK R +ALDH+L Sbjct: 1 MIEADRLVSGSSFTEEESLDRAIRPKLLTEYVGQPQVREQMGIFIQAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPLDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+G+GP+ARS+K++L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGDGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY + DL+ IV R A GL +++E A E+A R+RGTPRIA RLLRRVRDFAEV + Sbjct: 181 LEFYNVPDLQHIVGRSAACLGLTLSEEGALEVARRARGTPRIANRLLRRVRDFAEVRASG 240 Query: 240 TITREIADAALLRLAIDKMGFDQLD 264 ++ E+A +AL L +D GFD +D Sbjct: 241 NMSGEVAASALDMLNVDNQGFDYMD 265 >gi|254409986|ref|ZP_05023766.1| Holliday junction DNA helicase RuvB [Microcoleus chthonoplastes PCC 7420] gi|196183022|gb|EDX78006.1| Holliday junction DNA helicase RuvB [Microcoleus chthonoplastes PCC 7420] Length = 364 Score = 309 bits (791), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 155/307 (50%), Positives = 212/307 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ E L++ I AAKAR EALDH+L GPPGLGKTT++ ++A E+G N Sbjct: 54 IRPHRLADYIGQKELKDVLEIAIAAAKARNEALDHLLLYGPPGLGKTTMSLILATEMGTN 113 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P + + D+ +L NL+ D+LFIDEIHRL+ + EE+LYPAMED++LD+ +G+G Sbjct: 114 CKITAAPALERPRDIVGILVNLKPGDILFIDEIHRLTRMSEELLYPAMEDYRLDITIGKG 173 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 SAR+ I L +FTL+ ATTRVG LT+PL+DRFG+ RL FYE E+L IVQR A+L Sbjct: 174 QSARTRSIPLPQFTLVGATTRVGSLTSPLRDRFGLIQRLRFYEPEELSLIVQRTAQLLQT 233 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +++E A EIA RSRGTPRIA RLLRRVRD+A+V I ++A AL +D G D Sbjct: 234 PMSEEGAIEIARRSRGTPRIANRLLRRVRDYAQVKKMGVINPDVAAEALEVFNVDPAGLD 293 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D L+++ F GGPVG+E ++A E IE++ EPY++Q G++ RTPRGR+ Sbjct: 294 WTDRLVLSVMIEQFQGGPVGLEAVAAATGEDAQTIEEVYEPYLLQIGYLHRTPRGRVATD 353 Query: 322 IAWQHLG 328 A +HLG Sbjct: 354 AARKHLG 360 >gi|184201010|ref|YP_001855217.1| Holliday junction DNA helicase RuvB [Kocuria rhizophila DC2201] gi|183581240|dbj|BAG29711.1| Holliday junction DNA helicase RuvB [Kocuria rhizophila DC2201] Length = 366 Score = 308 bits (790), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 155/311 (49%), Positives = 212/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP TL++F GQ + L + +EA+K R DHVL GPPGLGKTTLA ++A EL V Sbjct: 30 LRPGTLDDFVGQKRVRAQLSLVLEASKLRGRTADHVLLSGPPGLGKTTLAMIIAEELEVP 89 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R +SGP I AGDLAA+L++L +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 90 LRISSGPAIQHAGDLAAILSSLTHGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 149 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A S+ ++L FTL+ ATTR GLL PL+DRFG L FY + +L+ +++R A L L Sbjct: 150 AGATSIPLDLPPFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVPELELVLRRSAGLLDL 209 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+T EA E+A RSRGTPRIA RLLRRVRD+A V + I A AAL +D G D Sbjct: 210 AMTSEAFSEVASRSRGTPRIANRLLRRVRDWALVHGVERIDARAAGAALDMYEVDARGLD 269 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L+ + F GGPVG+ T++ + E + +E + EP+++++G + RTPRGR+ M Sbjct: 270 RLDRNVLSALVGKFNGGPVGLSTLAIAVGEETETVETVAEPFLVREGLLGRTPRGRIAMA 329 Query: 322 IAWQHLGIDIP 332 AW+HLG+ +P Sbjct: 330 AAWEHLGLAVP 340 >gi|319947802|ref|ZP_08021996.1| Holliday junction DNA helicase RuvB [Dietzia cinnamea P4] gi|319438526|gb|EFV93452.1| Holliday junction DNA helicase RuvB [Dietzia cinnamea P4] Length = 368 Score = 308 bits (790), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 163/331 (49%), Positives = 219/331 (66%), Gaps = 1/331 (0%) Query: 5 EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E LS +++ D D+ LRPR+L EF GQ L + + AA R DH+LF GPP Sbjct: 19 EAELSASLTPFDTDVEGALRPRSLGEFIGQETVREQLDLVLTAATRRGVVPDHLLFSGPP 78 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKT+LA +VA ELG + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++ EE Sbjct: 79 GLGKTSLAMIVAAELGGSLRITSGPALERPGDLAAMLSNLIEGDVLFIDEIHRIARPAEE 138 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LY AMEDF++D+MVG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++FY Sbjct: 139 MLYLAMEDFRIDIMVGKGPGATSIPLEIAPFTLVGATTRSGALTGPLRDRFGFTAHMDFY 198 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 DL IV R A++ + V +AA EIA RSRGTPRIA RLLRRVRDFAEV IT Sbjct: 199 TDADLARIVTRAAEILAIPVDPDAALEIAGRSRGTPRIANRLLRRVRDFAEVRADGRITV 258 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +A AAL +D++G D+LD L + GGPVG+ T++ + E +E++ EP+ Sbjct: 259 PVARAALEVYEVDELGLDRLDRAVLRALLVQHEGGPVGLSTLAVAVGEESTTLEEVCEPF 318 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 +++ G + RTPRGR+ AW HLG+ P + Sbjct: 319 LVRAGLLARTPRGRIATAAAWDHLGLTRPDK 349 >gi|318042849|ref|ZP_07974805.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CB0101] Length = 362 Score = 308 bits (790), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 159/316 (50%), Positives = 215/316 (68%), Gaps = 4/316 (1%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 + +ED+ LRPR L ++ GQ E L + +EA +AR EALDHVL GPPGLGKTT+A Sbjct: 42 IQREDS----LRPRRLADYIGQRELKQVLGIAVEATRAREEALDHVLLYGPPGLGKTTMA 97 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 V+A ELGV R TS P + + D+ LL NLE R++LFIDEIHRL+ + EEILYPAMED Sbjct: 98 LVLAEELGVRCRITSAPALERPRDIVGLLVNLEPRELLFIDEIHRLNRVAEEILYPAMED 157 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F+LDL VG+G +AR+ + ++ FTL+ ATTR G L++PL+DRFG+ RL FY ++DL+ I Sbjct: 158 FRLDLTVGKGTTARTRSLPIAPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGLDDLQAI 217 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V R A L + + AA E+A R RGTPRIA RLLRRVRD A V ++ ++ AL Sbjct: 218 VLRAAGLLQIELDSSAALEVARRCRGTPRIANRLLRRVRDVAAVGGHGRVSPDLVHEALS 277 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 +D G D D R L ++ +GGGPVG++T++AGL E +E ++EP+++QQG +Q Sbjct: 278 LHRVDGRGLDASDRRLLHLLQHGYGGGPVGLDTLAAGLGEDPATLEAVVEPFLLQQGLLQ 337 Query: 312 RTPRGRLLMPIAWQHL 327 RTPRGR++ HL Sbjct: 338 RTPRGRVITEAGLAHL 353 >gi|269956460|ref|YP_003326249.1| Holliday junction DNA helicase RuvB [Xylanimonas cellulosilytica DSM 15894] gi|269305141|gb|ACZ30691.1| Holliday junction DNA helicase RuvB [Xylanimonas cellulosilytica DSM 15894] Length = 367 Score = 308 bits (790), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 162/318 (50%), Positives = 218/318 (68%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A + LRP+ L+EF GQ L + ++AA AR A DHVL GPPGLGKTTLA ++ Sbjct: 25 ERAAEAALRPKRLDEFVGQRVVRDQLSLVLQAALARGAAPDHVLLSGPPGLGKTTLAMII 84 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A EL + R TSGP I AGDLAA+L++LE+ +VLFIDEIHRL+ EE+LY AMEDF++ Sbjct: 85 ASELNTSLRVTSGPAIQHAGDLAAVLSSLEEGEVLFIDEIHRLARPAEELLYVAMEDFRV 144 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+G A ++ + L FT++ ATTR GLL PL+DRFG L+FY+ DL+ ++ R Sbjct: 145 DVIVGKGAGASAIPLALPPFTVVGATTRSGLLPAPLRDRFGFTGHLDFYDAADLERVIVR 204 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L G+ + AA EIA RSRGTPRIA RLLRRVRD+A+V + A AAL Sbjct: 205 SAGLLGVELHHAAAHEIAGRSRGTPRIANRLLRRVRDWAQVRGDGRLDLAAAHAALDVYE 264 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + R FGGGPVG+ T++ + E D +E + EPY++++GF+ RTP Sbjct: 265 VDPIGLDRLDRSVLDALCRRFGGGPVGLSTLAMTVGEEPDTVETVAEPYLVREGFVARTP 324 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ P+AW+HLG+ P Sbjct: 325 RGRVATPLAWEHLGLVAP 342 >gi|302533403|ref|ZP_07285745.1| Holliday junction DNA helicase RuvB [Streptomyces sp. C] gi|302442298|gb|EFL14114.1| Holliday junction DNA helicase RuvB [Streptomyces sp. C] Length = 356 Score = 308 bits (790), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 153/311 (49%), Positives = 211/311 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ + L + ++AA+ R DHVL G PGLGKTTL+ ++A E+G Sbjct: 30 LRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLSMIIAAEMGAP 89 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 90 IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 149 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + L FTL+ ATTR GLL PL+DRFG + FY +L+ +V R A L + Sbjct: 150 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVVHRSAGLLDV 209 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA RSRGTPRIA RLLRRVRD+A+V ITRE+A AL +D G D Sbjct: 210 EIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITREVAATALQVYEVDARGLD 269 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + + FGGGPVG+ T++ + E R+ +E++ EP+++++G + RTPRGR+ P Sbjct: 270 RLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRIATP 329 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 330 AAWAHLGLVPP 340 >gi|296393860|ref|YP_003658744.1| Holliday junction DNA helicase RuvB [Segniliparus rotundus DSM 44985] gi|296181007|gb|ADG97913.1| Holliday junction DNA helicase RuvB [Segniliparus rotundus DSM 44985] Length = 348 Score = 308 bits (790), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 151/311 (48%), Positives = 210/311 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L++F GQ + L++ + AK+R DHVLF GPPGLGKT+LA +VA ELG Sbjct: 26 LRPRALDDFIGQAKVREQLRLLLHGAKSRGTVPDHVLFSGPPGLGKTSLAMIVASELGCA 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP + +AGDLAALL+NL + DVLFIDEIHR++ EE+LY AMEDF++D++VG+G Sbjct: 86 LRLTSGPALERAGDLAALLSNLVEGDVLFIDEIHRMARPAEEMLYLAMEDFRVDVVVGKG 145 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + L+ FTL+ ATTR G LTNPL+DRFG + FY +L ++ R AK+ + Sbjct: 146 PGAMAIPLTLAPFTLVGATTRTGALTNPLRDRFGFVGHMEFYTPPELAQVLARSAKILAV 205 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EIA RSRGTPRIA RLLRRVRD+A+V + A AAL +D++G D Sbjct: 206 ELAPDAAIEIASRSRGTPRIANRLLRRVRDYAQVRGDGVVDLAAARAALQIFDVDELGLD 265 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L+ + GGGPVG+ T++ + E + ++ EP++++ G + RTPRGR+ Sbjct: 266 RLDRAVLSALVSGHGGGPVGVSTLAVAVGEEPATVAEVCEPFLVRAGLVARTPRGRVATQ 325 Query: 322 IAWQHLGIDIP 332 W H+G+ P Sbjct: 326 AGWAHMGLKPP 336 >gi|300741594|ref|ZP_07071615.1| holliday junction DNA helicase RuvB [Rothia dentocariosa M567] gi|311113688|ref|YP_003984910.1| crossover junction ATP-dependent DNA helicase RuvB [Rothia dentocariosa ATCC 17931] gi|300380779|gb|EFJ77341.1| holliday junction DNA helicase RuvB [Rothia dentocariosa M567] gi|310945182|gb|ADP41476.1| crossover junction ATP-dependent DNA helicase RuvB [Rothia dentocariosa ATCC 17931] Length = 363 Score = 308 bits (790), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 152/311 (48%), Positives = 209/311 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L++F GQ L + +EA+K R + DHVL GPPGLGKTTLA ++A E+ Sbjct: 49 LRPKSLDDFVGQKRVRQQLSLVLEASKMRGRSADHVLLSGPPGLGKTTLAMIIAAEMEAP 108 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I +GDLAA+L++L +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 109 LRITSGPAIQHSGDLAAILSSLTPGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 168 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A S+ + L +FTL+ ATTR GLL PL+DRFG L FY + +L+ +++R A L + Sbjct: 169 AGATSIPLELPQFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVPELELVLRRSAGLMDM 228 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T E EIA RSRGTPRIA RLLRRVRD+A V I A AL +D G D Sbjct: 229 RITSEGYAEIAGRSRGTPRIANRLLRRVRDWALVNDVHDINSHDAATALDMYEVDARGLD 288 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + FGGGPVG+ T++ + E + +E + EPY++++G I RTPRGR+ +P Sbjct: 289 RLDRAVLESLIHKFGGGPVGLSTLAIAVGEETETVETVAEPYLVREGLIGRTPRGRVALP 348 Query: 322 IAWQHLGIDIP 332 AW+HLG++ P Sbjct: 349 AAWEHLGLEAP 359 >gi|306780630|ref|ZP_07418967.1| holliday junction DNA helicase RuvB [Mycobacterium tuberculosis SUMu002] gi|308326461|gb|EFP15312.1| holliday junction DNA helicase RuvB [Mycobacterium tuberculosis SUMu002] Length = 355 Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 157/324 (48%), Positives = 218/324 (67%), Gaps = 1/324 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 V + D D+SL RPR+L EF GQ L++ IE AK R DH+L GPPGLGKT+L Sbjct: 14 TVGEGDIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILLSGPPGLGKTSL 72 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AME Sbjct: 73 AMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAEEMLYLAME 132 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG ++FYE +L+ Sbjct: 133 DFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFYEPAELER 192 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 ++ R A + G+ + +A EIA RSRGTPRIA RLLRRVRDFAEV ITR++A AAL Sbjct: 193 VLARSAGILGIELGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVITRDVAKAAL 252 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +D++G D+LD L+ + R+FGGGPVG+ T++ + E +E++ EP++++ G + Sbjct: 253 EVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEAATVEEVCEPFLVRAGMV 312 Query: 311 QRTPRGRLLMPIAWQHLGIDIPHR 334 RT R+ G D R Sbjct: 313 ARTRAARVATAPGLDAPGHDATGR 336 >gi|314981357|gb|EFT25451.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes HL110PA3] Length = 342 Score = 308 bits (789), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 153/318 (48%), Positives = 214/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A+ + LRP L EF GQ L + + A+K+R DHVL GPPGLGKTTLA ++ Sbjct: 16 EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ R +SGP I AGDLAA+L++L +V F+ EIHR+S EE+LY AMEDF++ Sbjct: 76 ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLGEIHRMSKPAEEMLYLAMEDFRV 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A ++ I + FTL+ ATTR GLL PL+DRFG +L++YE+ DL+ IV R Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + + AA IA RSRGTPRIA RLLRRVRD+A+V H +T + A+ AL Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + FGGGPVG+ T++ + E +E++ EP++++ GF+ RTP Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW+HLG++ P Sbjct: 316 RGRVATDRAWRHLGLEPP 333 >gi|116074410|ref|ZP_01471672.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RS9916] gi|116069715|gb|EAU75467.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RS9916] Length = 347 Score = 308 bits (789), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 161/318 (50%), Positives = 213/318 (66%), Gaps = 8/318 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L ++ GQ E L + ++AA AR +ALDHVL GPPGLGKTT+A V+A ELGV Sbjct: 19 LRPRRLNDYIGQRELKQVLGIAVQAASARGDALDHVLLYGPPGLGKTTMALVLAEELGVT 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TS P + + D+ LL NL+ R++LFIDEIHRL+ + EE+LYPAMED +LDL VG+G Sbjct: 79 CRITSAPALERPRDIVGLLVNLQPRELLFIDEIHRLTRVAEELLYPAMEDRRLDLTVGKG 138 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+ ++L FTL+ ATTR G L++PL+DRFG+ RL FY EDL+ IV+R A L GL Sbjct: 139 STARTRTLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGQEDLEAIVERAAGLLGL 198 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--------AHAKTITREIADAALLRL 253 ++ + EIA R RGTPRIA RLLRRVRD A V A I E+ D AL Sbjct: 199 KLSPQGCTEIARRCRGTPRIANRLLRRVRDVASVRGAASGDPVEATVIDAELVDEALSLH 258 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D G D D R L ++ + GGGPVG++T++A L E +E ++EPY++Q GF+QRT Sbjct: 259 RVDGRGLDASDRRLLELLLQGHGGGPVGLDTLAAALGEDSTTLETVVEPYLLQLGFLQRT 318 Query: 314 PRGRLLMPIAWQHLGIDI 331 PRGR++ +HLG + Sbjct: 319 PRGRVVTAAGRRHLGWPV 336 >gi|332670538|ref|YP_004453546.1| Holliday junction DNA helicase RuvB [Cellulomonas fimi ATCC 484] gi|332339576|gb|AEE46159.1| Holliday junction DNA helicase RuvB [Cellulomonas fimi ATCC 484] Length = 355 Score = 308 bits (789), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 161/316 (50%), Positives = 220/316 (69%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A + LRPRTL+EF GQ L + ++AA+ R A DHVL GPPGLGKTTLA ++ Sbjct: 30 ERAAEAALRPRTLDEFVGQRVVRDQLSLVLQAARRRGRAPDHVLLSGPPGLGKTTLAMII 89 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A ELG + R TSGP I AGDLAA+L++LE+ +VLF+DEIHRL+ EE+LY AMEDF++ Sbjct: 90 AAELGTSLRVTSGPAIQHAGDLAAVLSSLEEGEVLFLDEIHRLARPAEELLYVAMEDFRV 149 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+G A ++ + L FT++ ATTR GLL PL+DRFG L+FYE +L+ ++ R Sbjct: 150 DVVVGKGAGASAIPLALPPFTVVGATTRAGLLPAPLRDRFGFTGHLDFYETHELERVLLR 209 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L G+ + +AA EIA RSRGTPRIA RLLRRVRD+AEV ++ A AAL Sbjct: 210 SAGLLGVPLDGDAAAEIASRSRGTPRIANRLLRRVRDWAEVRGDGMLSLAAARAALEVYE 269 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D+LD L+ + FGGGPVG+ T++ + E + +E + EP+++++G I RTP Sbjct: 270 VDARGLDRLDRAVLSALCTRFGGGPVGLTTLAVAVGEEPETVETVAEPFLVREGLIGRTP 329 Query: 315 RGRLLMPIAWQHLGID 330 RGR+ +P AW+HLG+D Sbjct: 330 RGRVALPGAWEHLGLD 345 >gi|315655416|ref|ZP_07908316.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus curtisii ATCC 51333] gi|315490356|gb|EFU79981.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus curtisii ATCC 51333] Length = 345 Score = 308 bits (789), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 156/311 (50%), Positives = 212/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL +F GQ + L++ + AAK R EA DHVL GPPGLGKTTLA ++A E+ + Sbjct: 29 LRPKTLGDFIGQETVKTQLQLVLSAAKERGEAADHVLLAGPPGLGKTTLAMIIAAEMSSS 88 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L++L++ DVLFIDEIHRL+ EE+LY AMEDF++D++VG+G Sbjct: 89 LRLTSGPAIGHAGDLAAILSSLQEGDVLFIDEIHRLARPAEEMLYLAMEDFRVDVVVGKG 148 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + L FTL+ ATTR GLL PL+DRFG L Y+ DL IV+R A L G Sbjct: 149 PGATSIPLTLPPFTLVGATTRAGLLPAPLRDRFGFTAHLEPYQPPDLALIVKRSASLLGS 208 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T++AA E+A RSRGTPR+A RLLRRV DFA V E A AL +D++G D Sbjct: 209 EITEDAASEVARRSRGTPRVANRLLRRVIDFALVHGHPRCDLESARRALELFEVDELGLD 268 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + F GGPVG+ T++ + E + IE+++EP+++++G + RT RGR + P Sbjct: 269 RLDRSVLRAVIERFAGGPVGLHTLAVSVGEEPETIEEVVEPFLVREGLLIRTNRGRAITP 328 Query: 322 IAWQHLGIDIP 332 +HLG+ +P Sbjct: 329 KGCEHLGVTLP 339 >gi|213692040|ref|YP_002322626.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254767412|sp|B7GR18|RUVB_BIFLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|213523501|gb|ACJ52248.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458152|dbj|BAJ68773.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 354 Score = 308 bits (789), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 156/321 (48%), Positives = 217/321 (67%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+ + E A LRP L F GQ + L++F++AA+ R DH+L GPPGLGKT Sbjct: 24 SQPIGNEPASDEELRPHVLGGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VA EL V R TSGP + AGDLA++L++L+ +VLFIDEIHRL EE+LY A Sbjct: 84 TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDTGEVLFIDEIHRLPRAAEELLYIA 143 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY ++L Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHDEL 203 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + +++R A + G+ + D +A E+A+RSRGTPRIA RLLRRVRD+A V + + Sbjct: 204 QKLIERSANVLGVNLGDGSARELALRSRGTPRIANRLLRRVRDWAIVHDLIEVRSDDVKE 263 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL ID G D+LD+ L I RNF GGPVG+ ++A + E + +E + EPY++++G Sbjct: 264 ALALYQIDSEGLDRLDIAVLDAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323 Query: 309 FIQRTPRGRLLMPIAWQHLGI 329 F+ RTP+GR+ AW+HLGI Sbjct: 324 FLIRTPKGRVATEKAWRHLGI 344 >gi|327330391|gb|EGE72140.1| holliday junction DNA helicase RuvB [Propionibacterium acnes HL097PA1] Length = 342 Score = 308 bits (789), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 153/318 (48%), Positives = 214/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A+ + LRP L EF GQ L + + A+K+R DHVL GPPGLGKTTLA ++ Sbjct: 16 EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ R +SGP I AGDLAA+L++L +V F+DEIHR+S EE+LY AMEDF++ Sbjct: 76 ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A ++ I + FTL+ ATTR GLL PL+DRFG +L++YE+ DL+ IV R Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + + AA IA RSRGTPRIA RLLRRVRD+A+V H +T + A+ AL Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + FGGGPVG+ T++ + E +E++ EP++++ GF+ RTP Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW+HL ++ P Sbjct: 316 RGRVATDRAWRHLDLEPP 333 >gi|297170852|gb|ADI21871.1| holliday junction resolvasome, helicase subunit [uncultured verrucomicrobium HF0130_25O04] Length = 301 Score = 308 bits (789), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 148/283 (52%), Positives = 204/283 (72%) Query: 43 FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN 102 + AA+ R EAL HVL GPPGLGKTTLA ++ REL + R TSGPVI K GDLA LLTN Sbjct: 1 MVGAARKREEALKHVLLCGPPGLGKTTLAHIIGRELKRDVRITSGPVIDKPGDLAGLLTN 60 Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 L++ D+LFIDEIHR+ VEE LY AMED+++D+M+ +GP+ARSV++ + RFTL+ ATTR Sbjct: 61 LQEGDLLFIDEIHRIPKTVEEYLYSAMEDYRIDIMIDQGPNARSVRLEIPRFTLVGATTR 120 Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 VGLLT+P++ RF + RL++Y+ +DL IV R L + E A E+A R+RGTPRIA Sbjct: 121 VGLLTSPMRSRFTLQTRLDYYDRKDLTKIVLRSCNLLDCPIDQEGAEELAGRARGTPRIA 180 Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282 L+ RD+A+ ITRE+A +AL LAID G D++D R L +A+N+ GGPVG+ Sbjct: 181 NNLIHFTRDYADEKRDGKITREVACSALELLAIDAHGLDEMDKRILLTMAKNYKGGPVGL 240 Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325 TI+ G+ E +E++ EP++IQ+G+++RTP+GR+L P W+ Sbjct: 241 GTIAVGVGEEEHTLEEVHEPFLIQEGYLKRTPQGRILTPRGWE 283 >gi|325971232|ref|YP_004247423.1| Holliday junction ATP-dependent DNA helicase ruvB [Spirochaeta sp. Buddy] gi|324026470|gb|ADY13229.1| Holliday junction ATP-dependent DNA helicase ruvB [Spirochaeta sp. Buddy] Length = 353 Score = 308 bits (788), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 151/327 (46%), Positives = 217/327 (66%), Gaps = 1/327 (0%) Query: 4 REGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 + ++S + QE D ++LRP+ L++F GQ NL VF++AA+ R E LDH +GP Sbjct: 13 QSSVVSTSFQQEADKQENILRPKMLKDFQGQQRLKDNLAVFVQAARERKEPLDHTFLIGP 72 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A E+G R TS P + K DLA +LTN+ + V FIDEIHRL +E Sbjct: 73 PGLGKTTLASIIANEMGAEIRMTSAPALDKPKDLAGILTNVTEGSVFFIDEIHRLKPALE 132 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMEDF++D ++G+GP+AR+++I L +FTL+ ATT+ G +++PL RFGI + F Sbjct: 133 EMLYIAMEDFEIDWVIGQGPAARTMRIPLPKFTLVGATTKAGSVSSPLSSRFGITCHIEF 192 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y ++L +I+ R A++ + + +A ++A SRGTPRIA RLLRR+RDFA V T+T Sbjct: 193 YNEQELASIIARSAQIMDVQIDKKAIVQLARCSRGTPRIANRLLRRLRDFAMVMGDGTVT 252 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 + D + RL ID G + D L I + GGPVG ET+S + E +++ED EP Sbjct: 253 VAVVDHGMERLGIDNNGLETQDRNILRTIIEFYDGGPVGAETLSISVGEAIESLEDFYEP 312 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329 Y+IQ+GF++RTPRGR+ A+ LGI Sbjct: 313 YLIQKGFLKRTPRGRMTTKKAYDLLGI 339 >gi|145640254|ref|ZP_01795838.1| Holliday junction DNA helicase B [Haemophilus influenzae R3021] gi|145274840|gb|EDK14702.1| Holliday junction DNA helicase B [Haemophilus influenzae 22.4-21] Length = 263 Score = 308 bits (788), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 148/250 (59%), Positives = 190/250 (76%) Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +EE+LYPAMED+QLD+M Sbjct: 1 MGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIM 60 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 +GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY +EDL +IV R A Sbjct: 61 IGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAD 120 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 L + +AA E+A RSRGTPRIA RLLRRVRD+A+V + I+ +A AL L +D Sbjct: 121 CLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGIISINVAKQALSMLDVDD 180 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 GFD LD + L+ + F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR Sbjct: 181 AGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGR 240 Query: 318 LLMPIAWQHL 327 + ++H Sbjct: 241 IATSQTYRHF 250 >gi|154487344|ref|ZP_02028751.1| hypothetical protein BIFADO_01194 [Bifidobacterium adolescentis L2-32] gi|154083862|gb|EDN82907.1| hypothetical protein BIFADO_01194 [Bifidobacterium adolescentis L2-32] Length = 362 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 156/318 (49%), Positives = 216/318 (67%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V E LRP L+ F GQ + L++F++AA+ R DH+L GPPGLGKTTLA Sbjct: 32 VGNEPVSDEELRPHILKGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKTTLA 91 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA EL V R TSGP I AGDLA++L++L+ +VLFIDEIHRL EE+LY AMED Sbjct: 92 MIVANELEVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 151 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY E+L+ + Sbjct: 152 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 211 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R + + G+ + D AA ++AMRSRGTPRIA RLLRRVRD+A V +++ + AL Sbjct: 212 IERSSAVLGIQLEDGAARQLAMRSRGTPRIANRLLRRVRDWAIVHDLESVRPDDVKEALA 271 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 ID G D+LD+ L I NF GGPVG+ ++A + E + +E + EPY++++GF+ Sbjct: 272 LYQIDTEGLDRLDIAVLKAIVTNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREGFLI 331 Query: 312 RTPRGRLLMPIAWQHLGI 329 RTP+GR+ AW+HLGI Sbjct: 332 RTPKGRVATRKAWEHLGI 349 >gi|269795059|ref|YP_003314514.1| Holliday junction DNA helicase subunit RuvB [Sanguibacter keddieii DSM 10542] gi|269097244|gb|ACZ21680.1| Holliday junction DNA helicase subunit RuvB [Sanguibacter keddieii DSM 10542] Length = 355 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 157/318 (49%), Positives = 216/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A + LRPR L+EF GQ L + ++AA R + DHVL GPPGLGKTTLA ++ Sbjct: 30 ERAAEAALRPRRLDEFVGQRVVRDQLSLVLDAAIGRGSSPDHVLLSGPPGLGKTTLAMII 89 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A ELG + R TSGP I AGDLAA+L++L++ +VLFIDEIHRL+ EE+LY AMEDF++ Sbjct: 90 AAELGASLRVTSGPAIQHAGDLAAVLSSLDEGEVLFIDEIHRLARPAEELLYVAMEDFRV 149 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+G A ++ + L RFT++ ATTR GLL PL+DRFG L+FY ++L+ ++ R Sbjct: 150 DVVVGKGAGASAIPLTLPRFTVVGATTRAGLLPAPLRDRFGFTGHLDFYSSDELERVLTR 209 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L G A+ +AA E+A RSRGTPRIA RLLRRVRD+AEV ++ A AAL Sbjct: 210 SAGLLGSALQPQAASELASRSRGTPRIANRLLRRVRDWAEVRGDGSMDLRAARAALEVYE 269 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + F GGPVG+ T++ + E + +E + EP+++++G + RTP Sbjct: 270 VDDLGLDRLDRAVLRALCTRFAGGPVGLTTLAVTVGEEPETVETVAEPFLVREGLMGRTP 329 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ P AW HLG+ P Sbjct: 330 RGRVATPAAWAHLGLTPP 347 >gi|330836554|ref|YP_004411195.1| Holliday junction DNA helicase subunit RuvB [Spirochaeta coccoides DSM 17374] gi|329748457|gb|AEC01813.1| Holliday junction DNA helicase subunit RuvB [Spirochaeta coccoides DSM 17374] Length = 356 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 151/316 (47%), Positives = 212/316 (67%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 Q D +LLRP+ L++F GQ + NL VFI AA+ R EALDHV +GPPGLGKTTLA + Sbjct: 27 QGDETENLLRPQRLKDFQGQQKLKDNLSVFITAARERNEALDHVFLIGPPGLGKTTLATI 86 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E+ R TS P + K DLA +LTN+ + V FIDEIHRL +EE+LY AMED++ Sbjct: 87 IANEMNAEIRMTSAPALDKPKDLAGILTNISENSVFFIDEIHRLKPALEEMLYIAMEDYE 146 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D ++G+GP+AR+++I L RFTLI ATT+ G +++PL RFGI ++FY +L I+ Sbjct: 147 IDWVIGQGPAARTMRIPLPRFTLIGATTKAGQVSSPLHSRFGITCHIDFYNENELSGIIL 206 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R + + G +T +A +A SRGTPRIA RLLRR+RDFA+V + +I + RL Sbjct: 207 RSSGIVGTEITPDAVSLLARCSRGTPRIANRLLRRLRDFADVIGTGIVDVDIVHEGMKRL 266 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 ID G D+ D L I + GGPVG +T+S + E +++ED EPY+IQ+G+++RT Sbjct: 267 GIDLNGLDEQDRNILRTIIEFYDGGPVGADTLSISVGEASESLEDFYEPYLIQKGYLKRT 326 Query: 314 PRGRLLMPIAWQHLGI 329 PRGR++ A++ LGI Sbjct: 327 PRGRMVTRKAYELLGI 342 >gi|126660419|ref|ZP_01731529.1| Holliday junction DNA helicase B [Cyanothece sp. CCY0110] gi|126618285|gb|EAZ89044.1| Holliday junction DNA helicase B [Cyanothece sp. CCY0110] Length = 367 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 153/317 (48%), Positives = 217/317 (68%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N ++++ +RP LE++ GQ S L + I+AA R + LDH+L GPPGLGKTT+ Sbjct: 48 NKDSDESNGQNIRPHRLEDYIGQESLKSVLNIGIKAALGRQDPLDHLLLYGPPGLGKTTM 107 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + ++A E+GVN + T+ P + + D+ +L NL+ DVLFIDEIHRL+ + EE+LYPAME Sbjct: 108 SLILAEEMGVNCKITAAPALERPRDITGILVNLKPGDVLFIDEIHRLNRLTEELLYPAME 167 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D++LD+ +G+G +AR+ I L RFTL+ ATT+VG LT+PL+DRFG+ RL FYE E+L Sbjct: 168 DYRLDITIGKGQAARTRSIPLPRFTLVGATTKVGSLTSPLRDRFGLIERLRFYEPEELAL 227 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 I++R AK+ +++T A EIA RSRGTPRIA RLLRRVRD+ V ++IT +A +L Sbjct: 228 IIERTAKILEVSITQPGAMEIARRSRGTPRIANRLLRRVRDYQVVHKHQSITEGLAAESL 287 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +D MG D D L + NF GGPVG+E+++A E IED+ EPY++Q GF+ Sbjct: 288 DFYQVDPMGLDWTDRMILETMINNFNGGPVGLESVAASTGEDAKTIEDVYEPYLLQIGFL 347 Query: 311 QRTPRGRLLMPIAWQHL 327 RT RGR++ +A +HL Sbjct: 348 NRTHRGRMVTELAREHL 364 >gi|88808206|ref|ZP_01123717.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 7805] gi|88788245|gb|EAR19401.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 7805] Length = 361 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 162/322 (50%), Positives = 218/322 (67%), Gaps = 5/322 (1%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 L+R +ED+ LRP+ L ++ GQ E L + ++AA R EALDHVL GPPGLGK Sbjct: 35 LARAGVKEDS----LRPKRLADYIGQRELKQVLGIAVQAAIGRGEALDHVLLYGPPGLGK 90 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TT+A V+A ELGV R TS P + + D+ LL NL+ +D+LFIDEIHRLS + EE+LYP Sbjct: 91 TTMAMVLAEELGVTCRITSAPALERPRDIVGLLVNLQPKDLLFIDEIHRLSRVAEELLYP 150 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED +LDL VG+G +AR+ ++L FTL+ ATTR G L++PL+DRFG+ RL FY +ED Sbjct: 151 AMEDRRLDLTVGKGSTARTRALDLPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGLED 210 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIA 246 L+ IV+R A L L +++ A EIA R RGTPRIA RLLRRVRD A V A I + + Sbjct: 211 LQAIVERAAGLLNLELSEAACTEIARRCRGTPRIANRLLRRVRDVACVRACEGCIDQHLV 270 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL +D G D D R + ++ ++ GGGP G++T++A L E +E ++EPY++Q Sbjct: 271 DEALTLHRVDGRGLDASDRRLMELLLQSHGGGPAGLDTLAAALGEDPSTLESVVEPYLLQ 330 Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328 GF+QRTPRGR++ HLG Sbjct: 331 LGFLQRTPRGRVVTAAGRGHLG 352 >gi|294628362|ref|ZP_06706922.1| Holliday junction DNA helicase RuvB [Streptomyces sp. e14] gi|292831695|gb|EFF90044.1| Holliday junction DNA helicase RuvB [Streptomyces sp. e14] Length = 356 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 213/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ + L + + AA+AR DHVL G PGLGKTTL+ ++A E+G Sbjct: 31 LRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLSMIIAAEMGAP 90 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 91 IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 150 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + L FTL+ ATTR GLL PL+DRFG + FYE +L+ +V R A L + Sbjct: 151 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELERVVHRSASLLDV 210 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA RSRGTPRIA RLLRRVRD+A+V ITREIA AAL +D G D Sbjct: 211 EIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITREIAAAALAVYEVDPRGLD 270 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + + FGGGPVG+ T++ + E R+ +E++ EP+++++G + RTPRGR+ P Sbjct: 271 RLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 330 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 331 AAWAHLGLTPP 341 >gi|298346871|ref|YP_003719558.1| crossover junction endoribonuclease subunit B [Mobiluncus curtisii ATCC 43063] gi|304389424|ref|ZP_07371387.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656671|ref|ZP_07909558.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236932|gb|ADI68064.1| crossover junction endoribonuclease subunit B [Mobiluncus curtisii ATCC 43063] gi|304327234|gb|EFL94469.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492626|gb|EFU82230.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 345 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 157/311 (50%), Positives = 211/311 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL +F GQ + L++ + AAK R EA DHVL GPPGLGKTTLA ++A E+ + Sbjct: 29 LRPKTLGDFIGQETVKTQLQLVLSAAKERGEAADHVLLAGPPGLGKTTLAMIIAAEMSSS 88 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L++L++ DVLFIDEIHRL+ EE+LY AMEDF++D++VG+G Sbjct: 89 LRLTSGPAIGHAGDLAAILSSLQEDDVLFIDEIHRLARPAEEMLYLAMEDFRVDVVVGKG 148 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + L FTL+ ATTR GLL PL+DRFG L Y+ DL IV+R A L G Sbjct: 149 PGATSIPLTLPPFTLVGATTRAGLLPAPLRDRFGFTAHLEPYQPPDLALIVKRSASLLGS 208 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T++AA EIA RSRGTPR+A RLLRRV DFA V E A AL +D++G D Sbjct: 209 EITEDAASEIARRSRGTPRVANRLLRRVIDFALVHGHPRCDLESARRALELFEVDELGLD 268 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + F GGPVG+ T++ + E + IE+++EP+++++G + RT RGR + P Sbjct: 269 RLDRSVLRAVIERFAGGPVGLHTLAVSVGEEPETIEEVVEPFLVREGLLIRTNRGRAITP 328 Query: 322 IAWQHLGIDIP 332 +HLG+ P Sbjct: 329 KGCEHLGVTPP 339 >gi|23465307|ref|NP_695910.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum NCC2705] gi|227547257|ref|ZP_03977306.1| Holliday junction DNA helicase B [Bifidobacterium longum subsp. infantis ATCC 55813] gi|44888505|sp|Q8G6B7|RUVB_BIFLO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|23325945|gb|AAN24546.1| holliday junction DNA helicase RuvB [Bifidobacterium longum NCC2705] gi|227212216|gb|EEI80112.1| Holliday junction DNA helicase B [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 354 Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 156/321 (48%), Positives = 215/321 (66%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+ + E LRP L F GQ + L++F++AA+ R DH+L GPPGLGKT Sbjct: 24 SQPIGNEPVSDEELRPHVLGGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VA EL V R TSGP + AGDLA++L++L+ +VLFIDEIHRL EE+LY A Sbjct: 84 TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY E+L Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + +++R A + G+ + +A E+A+RSRGTPRIA RLLRRVRD+A V + + Sbjct: 204 EKLIERSANVLGVNLDTGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL ID G D+LD+ L I RNF GGPVG+ ++A + E + +E + EPY++++G Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323 Query: 309 FIQRTPRGRLLMPIAWQHLGI 329 F+ RTP+GR+ AWQHLGI Sbjct: 324 FMIRTPKGRVATEKAWQHLGI 344 >gi|308177526|ref|YP_003916932.1| Holliday junction ATP-dependent DNA helicase RuvB [Arthrobacter arilaitensis Re117] gi|307744989|emb|CBT75961.1| Holliday junction ATP-dependent DNA helicase RuvB [Arthrobacter arilaitensis Re117] Length = 349 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 161/333 (48%), Positives = 221/333 (66%), Gaps = 1/333 (0%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M D GL S E+ I + LRPR L++F GQ L + +EAAK R DHVL Sbjct: 1 MNDSTGLTSAGSEPEERVIEAALRPRNLDDFVGQSRVRQQLSLVLEAAKIRERTADHVLL 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTL+ ++A E+ R +SGP I AGDLAA+L++L + +VLF+DEIHR+S Sbjct: 61 SGPPGLGKTTLSMIIAAEMNAPLRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSR 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 EE+LY AMEDF++D++VG+G A ++ + L FTL+ ATTR GLL PL+DRFG Sbjct: 121 PAEEMLYMAMEDFRVDIIVGKGAGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGH 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY +++L+ +++R A + L+VT A EIA RSRGTPRIA RLLRRVRD+A V + Sbjct: 181 LEFYAVKELELVLRRSAMMLDLSVTSAAFTEIAGRSRGTPRIANRLLRRVRDWALVHKLE 240 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I + A AAL +D G D+LD L + FGGGPVG+ T++ + E + +E + Sbjct: 241 EIDAKAAAAALDMYEVDARGLDRLDRGVLEALCTKFGGGPVGLSTLAIAVGEETETVETV 300 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY++++G + RTPRGR+ MP AW+HLG+ +P Sbjct: 301 AEPYLVREGLMGRTPRGRIAMPGAWEHLGLAMP 333 >gi|167912492|ref|ZP_02499583.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 112] Length = 272 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 155/255 (60%), Positives = 193/255 (75%) Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +GVN R TSGPV+ +AGDLAALLTNLE DVLFIDEIHRLS +VEEILYPA+ED+Q+D+M Sbjct: 1 MGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQIDIM 60 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 +GEGP+ARSVK++L FTL+ ATTR G+LTNPL+DRFGI RL FY+ E L IV+R A Sbjct: 61 IGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIVRRSAA 120 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 L + A EIA RSRGTPRIA RLLRRVRD+AEV IT +ADAAL L +D Sbjct: 121 LLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAAVADAALAMLDVDP 180 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 +GFD +D + L I F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR Sbjct: 181 VGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGR 240 Query: 318 LLMPIAWQHLGIDIP 332 + + ++H G+ P Sbjct: 241 VATLLTYRHFGLSAP 255 >gi|297559815|ref|YP_003678789.1| Holliday junction DNA helicase RuvB [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844263|gb|ADH66283.1| Holliday junction DNA helicase RuvB [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 382 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/308 (48%), Positives = 216/308 (70%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L+EF GQ L + + +AK R A DH+L G PGLGKTTLA ++A E+G Sbjct: 40 LRPRALDEFVGQERVREQLSLVLHSAKRRNRAPDHILMSGGPGLGKTTLAMIIAAEMGAP 99 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I ++GDLAA+L+ L++ +VLF+DEIHR++ EE+LY AMEDF++D++VG+G Sbjct: 100 LRITSGPAIERSGDLAAVLSTLQEGEVLFLDEIHRMARPAEEMLYVAMEDFRVDVVVGKG 159 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ ++++ FTL+ ATTR G+L PL+DRFG ++FY ++L+ I+QR A L G Sbjct: 160 PGATAIPLDIAPFTLVGATTRAGMLPAPLRDRFGFTAHMDFYTPQELELILQRSAGLLGA 219 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EIA RSRGTPRIA RLLRRVRD+AEV ++ + A AAL +D++G D Sbjct: 220 PLDADAAVEIAGRSRGTPRIANRLLRRVRDYAEVRGNGRLSLDTARAALDLYEVDELGMD 279 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L ++ R F GGPVG+ T++ + E + +E + EP++++ GF+ RTPRGR+ P Sbjct: 280 RLDRAILDVLMRRFRGGPVGLSTLAVSVGEEAETVETVAEPFLVRSGFLARTPRGRVATP 339 Query: 322 IAWQHLGI 329 AW H+G+ Sbjct: 340 QAWAHMGL 347 >gi|149196354|ref|ZP_01873409.1| Holliday junction DNA helicase B [Lentisphaera araneosa HTCC2155] gi|149140615|gb|EDM29013.1| Holliday junction DNA helicase B [Lentisphaera araneosa HTCC2155] Length = 341 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 156/326 (47%), Positives = 216/326 (66%), Gaps = 3/326 (0%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E L + + D ++LRP+T EEF GQ + L +F+EAAK R EAL H + GPPG Sbjct: 7 ESTLKKETGEND---NILRPKTFEEFPGQDQVKERLSIFVEAAKMRDEALGHFILSGPPG 63 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA +VA E G +++SGPV+ K GDLA LLT+L D D+LFIDEIHRL I +EE Sbjct: 64 LGKTTLAYIVANERGKGIKTSSGPVLEKPGDLAGLLTSLSDGDILFIDEIHRLPIAIEEY 123 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 LY AMEDF +D+M+ +G ARSV++N+ +FTL+ ATTR+GL + PL+ R RL +Y Sbjct: 124 LYSAMEDFFIDIMIDQGVGARSVRLNIPKFTLVGATTRLGLCSAPLRSRCQHVHRLEYYS 183 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 E+L IV+R + L + ++A+ E+A RSRGTPRIA LL VRD+A+V +T + Sbjct: 184 DEELGRIVKRSSDLINCEMDEKASHEVAGRSRGTPRIANNLLHWVRDYAQVKADGFVTWD 243 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A+ AL L ID G D++D + L IA NF GPVGI+ I+ + E +ED+ EP++ Sbjct: 244 LANKALNMLNIDSNGLDEMDKKILNTIAYNFDCGPVGIKNIAVSVGEEVGTLEDVYEPFL 303 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330 IQ+G++ RT GR++ LGI+ Sbjct: 304 IQEGYLVRTQTGRVISQKTKNMLGIN 329 >gi|239621475|ref|ZP_04664506.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515936|gb|EEQ55803.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 354 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 156/321 (48%), Positives = 214/321 (66%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S + E LRP L F GQ + L++F++AA+ R DH+L GPPGLGKT Sbjct: 24 SSPIGNEPVSDEELRPHVLGGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VA EL V R TSGP + AGDLA++L++L+ +VLFIDEIHRL EE+LY A Sbjct: 84 TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY E+L Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + +++R A + G+ + +A E+A+RSRGTPRIA RLLRRVRD+A V + + Sbjct: 204 EKLIERSANVLGVNLDTGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL ID G D+LD+ L I RNF GGPVG+ ++A + E + +E + EPY++++G Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323 Query: 309 FIQRTPRGRLLMPIAWQHLGI 329 F+ RTP+GR+ AWQHLGI Sbjct: 324 FMIRTPKGRVATEKAWQHLGI 344 >gi|325109079|ref|YP_004270147.1| Holliday junction DNA helicase subunit RuvB [Planctomyces brasiliensis DSM 5305] gi|324969347|gb|ADY60125.1| Holliday junction DNA helicase subunit RuvB [Planctomyces brasiliensis DSM 5305] Length = 351 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 149/307 (48%), Positives = 208/307 (67%), Gaps = 1/307 (0%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83 P+ L E GQ + +++ + AA++R ++L H+L GPPGLGKTTLA + +ELG +F+ Sbjct: 39 PQALSEIVGQQKVVERVQIMLTAAQSRGDSLGHLLLEGPPGLGKTTLAMALPKELGSDFQ 98 Query: 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143 TSGP + DL LT +R VLFIDEIHRL VEE +YPAMEDF++D+ +G+G + Sbjct: 99 ITSGPTLKAPKDLLPYLTRATERSVLFIDEIHRLPPAVEEFIYPAMEDFRVDIALGDGLN 158 Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203 AR+V + L FT++ ATTR G+LT PL+DRF +FYE +L T++QR A ++ Sbjct: 159 ARTVNMTLKPFTIVGATTRSGMLTAPLRDRFVNRAHFDFYETHELATLLQRNATKLRTSL 218 Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREIADAALLRLAIDKMGFDQ 262 +AA EI MRSRGTPR A LLR +RDFA+V H + I+ EIA+AA+ + ID +G ++ Sbjct: 219 APDAAEEIGMRSRGTPRKANNLLRWIRDFAQVQHKSNDISLEIANAAMAMIEIDAIGLEE 278 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322 +D RYL + F GGP G+ I ++ P D +ED IEP++++QGFIQRTPRGR++ P Sbjct: 279 MDRRYLMTLISVFSGGPAGLNAIGHSMNVPPDTLEDEIEPFLLRQGFIQRTPRGRMVTPA 338 Query: 323 AWQHLGI 329 AW HL I Sbjct: 339 AWDHLNI 345 >gi|183219942|ref|YP_001837938.1| Holliday junction DNA helicase RuvB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910066|ref|YP_001961621.1| Holliday junction DNA helicase RuvB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774742|gb|ABZ93043.1| Holliday junction DNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778364|gb|ABZ96662.1| Holliday junction DNA helicase RuvB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 341 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 152/308 (49%), Positives = 208/308 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L EF GQ E +NL V++EAA+ R LDHVL GPPGLGKTTLA ++A EL V Sbjct: 17 LRPTKLSEFIGQKEVLANLSVYVEAARKRKSPLDHVLISGPPGLGKTTLANIIANELAVA 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F TS P I+K DL LT L+ +VLFIDEIH EE+LYPAME+F +DL+VGEG Sbjct: 77 FTPTSAPAISKGADLVRFLTLLKTNEVLFIDEIHGFIKKQEELLYPAMENFFVDLVVGEG 136 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +A +++I L FTL+ ATTR GL+++PL+ RFGI ++L+FY E+++ IV R AKL G+ Sbjct: 137 VTANALQIQLQPFTLVGATTRSGLVSDPLKSRFGIHLKLDFYTDEEMQIIVDRSAKLLGV 196 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A E+ RSR TPRIA LL+RVRDFAEV + +++ + A R+ +D +G D Sbjct: 197 ELGQGVAMEVGKRSRKTPRIANHLLKRVRDFAEVNNETSVSLKTCRYAFDRMGVDHLGLD 256 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + L ++ +GGGPVGI+ I+ L E IED EP++++ G I RTP+GR+ Sbjct: 257 AVDRQILDILISRYGGGPVGIKPIAVVLGEEERTIEDTYEPFLVRVGLIDRTPQGRVATK 316 Query: 322 IAWQHLGI 329 A++HLG+ Sbjct: 317 KAYEHLGL 324 >gi|290961822|ref|YP_003493004.1| Holliday junction DNA helicase [Streptomyces scabiei 87.22] gi|260651348|emb|CBG74470.1| holliday junction DNA helicase [Streptomyces scabiei 87.22] Length = 356 Score = 306 bits (783), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 159/329 (48%), Positives = 222/329 (67%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E L+ +ED + + LRP+ L EF GQ + L + + AA+AR DHVL G P Sbjct: 13 ERLVGSVADREDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 72 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+G R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE Sbjct: 73 GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LY AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E +L+ ++ R A L + + + A EIA RSRGTPRIA RLLRRVRD+A+V ITR Sbjct: 193 EPAELERVIHRSANLLDVEIDTDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGFITR 252 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +IA AAL +D G D+LD L + + FGGGPVG+ T++ + E R+ +E++ EP+ Sbjct: 253 DIAGAALAVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 312 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++G + RTPRGR+ P AW HLG+ P Sbjct: 313 LVREGLLARTPRGRVATPAAWAHLGLTPP 341 >gi|113954123|ref|YP_729361.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CC9311] gi|122945871|sp|Q0IDW1|RUVB_SYNS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|113881474|gb|ABI46432.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CC9311] Length = 359 Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 163/319 (51%), Positives = 215/319 (67%), Gaps = 5/319 (1%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 + ++ED LRPR L+++ GQ E L + I+AA R EALDHVL GPPGLGKTT+ Sbjct: 36 SATKEDG----LRPRRLDDYIGQRELKQVLGIAIQAAMGRGEALDHVLLYGPPGLGKTTM 91 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A V+A ELGV R TS P + + D+ LL NL+ ++VLFIDEIHRL+ + EE+LYPAME Sbjct: 92 AMVLAEELGVTCRITSAPALERPRDIVGLLVNLQPKEVLFIDEIHRLTRVAEELLYPAME 151 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D +LDL VG+G +AR+ + L FTL+ ATTR G L++PL+DRFG+ RL FY EDL+ Sbjct: 152 DRRLDLTVGKGSTARTRALELPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGQEDLQA 211 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREIADAA 249 IV R A L L ++ EA EIA R RGTPRIA RLLRRVRD A V + I ++ D A Sbjct: 212 IVMRAAGLLTLQLSPEACAEIARRCRGTPRIANRLLRRVRDVACVREVSGCIDVKLVDEA 271 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L +D G D D R L ++ ++ GGGPVG++T++A L E +E ++EPY++Q GF Sbjct: 272 LTLHRVDGKGLDASDRRLLELLLQSHGGGPVGLDTLAAALGEDPTTLEAVVEPYLLQLGF 331 Query: 310 IQRTPRGRLLMPIAWQHLG 328 +QRTPRGR++ HLG Sbjct: 332 LQRTPRGRVVTAAGRGHLG 350 >gi|170781149|ref|YP_001709481.1| Holliday junction DNA helicase RuvB [Clavibacter michiganensis subsp. sepedonicus] gi|169155717|emb|CAQ00838.1| holliday junction dna helicase RuvB [Clavibacter michiganensis subsp. sepedonicus] Length = 359 Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 156/331 (47%), Positives = 217/331 (65%), Gaps = 4/331 (1%) Query: 5 EGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 G S V + DA+++ LRPR+L EF GQV+ L++ + AA + + DH+L G Sbjct: 6 HGDASSPVPESDAELAFEGALRPRSLSEFVGQVKVRGQLELLLTAAAMQNRSPDHILLAG 65 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA +VA E R TSGP I AGDLAA+L+ L ++LF+DEIHR++ Sbjct: 66 PPGLGKTTLAMIVAEESRRPLRLTSGPAIQHAGDLAAVLSALVPGEILFVDEIHRMARSA 125 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMED+++D+MVG+G A S+ + LS FTL+ ATTR G+L +PL+DRFG L Sbjct: 126 EEMLYLAMEDYRIDIMVGKGAGATSIPLELSPFTLVGATTRSGMLPSPLRDRFGFTAHLE 185 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FYE +L+ +++R A++ L + EA EIA R RGTPRIA RLLRRVRD+A V H Sbjct: 186 FYETHELEQVIERAARMLHLEIEHEAVAEIAGRCRGTPRIANRLLRRVRDYALV-HGTEA 244 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 E AAL +D +G D+LD + I FGGGPVG+ T++ + E + IE ++E Sbjct: 245 GLESVRAALDLYDVDPLGLDRLDRAVMRGILTRFGGGPVGLNTLAVSVGEEAETIESVVE 304 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 P++++ G + RTPRGR+ P AW+H G++ P Sbjct: 305 PFLVRIGLVTRTPRGRVATPAAWEHFGLEAP 335 >gi|254443663|ref|ZP_05057139.1| Holliday junction DNA helicase RuvB [Verrucomicrobiae bacterium DG1235] gi|198257971|gb|EDY82279.1| Holliday junction DNA helicase RuvB [Verrucomicrobiae bacterium DG1235] Length = 339 Score = 305 bits (782), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 152/311 (48%), Positives = 212/311 (68%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLLRP + +EF GQ + LK+ AA+ R E L+H+L GPPGLGKT+L+ ++ E+G Sbjct: 26 SLLRPPSFDEFVGQSKTVERLKIMSGAARKRGEPLNHILLSGPPGLGKTSLSFILGAEMG 85 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 N R TSGPV+ KAGDLA +LTNLE+ D+LFIDEIHR+ VEE LY AMED+ +D+M+ Sbjct: 86 RNVRITSGPVVEKAGDLAGMLTNLEEGDILFIDEIHRIPKTVEEYLYSAMEDYCIDIMID 145 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GP+ARSV++N+ RFTL+ ATTR GLLT PL+ RF + RL++Y EDL IV R KL Sbjct: 146 QGPNARSVRLNIPRFTLVGATTRNGLLTAPLRSRFTLQTRLDYYGPEDLLKIVTRTCKLL 205 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 + + + EIA R+RGTPRIA L+ VRD+AE TIT+ A AAL L ID +G Sbjct: 206 NVPLDTDGGLEIARRARGTPRIANNLVNFVRDYAEEKGNGTITKATAQAALELLEIDALG 265 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D++D R L ++A + PVG+ T++ + E +E++ EP++IQ G IQRT +GR++ Sbjct: 266 LDEMDKRLLRVMATTYNSRPVGLNTLAVAVGEESHTLEEVHEPFLIQSGLIQRTAQGRII 325 Query: 320 MPIAWQHLGID 330 + +G++ Sbjct: 326 TGDGLRAIGLE 336 >gi|329938964|ref|ZP_08288338.1| Holliday junction DNA helicase [Streptomyces griseoaurantiacus M045] gi|329301849|gb|EGG45742.1| Holliday junction DNA helicase [Streptomyces griseoaurantiacus M045] Length = 357 Score = 305 bits (780), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 159/329 (48%), Positives = 221/329 (67%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E L+ +ED + + LRP+ L EF GQ + L + + AA+AR DHVL G P Sbjct: 14 ERLVGSVADREDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 73 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+G R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE Sbjct: 74 GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 133 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LY AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 134 MLYMAMEDFRVDVVVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 193 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 E +L+ +V R A L + + + A EIA RSRGTPRIA RLLRRVRD+A+V I R Sbjct: 194 EPTELERVVHRSASLLDVEIDTDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGIIDR 253 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +IA AAL +D G D+LD L + + FGGGPVG+ T++ + E R+ +E++ EP+ Sbjct: 254 DIAAAALKVYEVDARGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 313 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++G + RTPRGR+ P AW HLG+ P Sbjct: 314 LVREGLLARTPRGRVATPAAWAHLGLTPP 342 >gi|167948215|ref|ZP_02535289.1| holliday junction DNA helicase RuvB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 285 Score = 305 bits (780), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 159/271 (58%), Positives = 193/271 (71%), Gaps = 5/271 (1%) Query: 13 SQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 S +DA I +RP L ++ GQ C +++FIEAA+ R EALDHVL GPPGLGKTTLA Sbjct: 14 SGDDAVIDRAIRPTRLGDYVGQPSVCEQMEIFIEAARRREEALDHVLIFGPPGLGKTTLA 73 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A E+GVN R TSGPV+ K GDLAALLTNLE DVLF+DEIHRLS +VEE+LYPA+ED Sbjct: 74 HIIANEMGVNLRQTSGPVLEKPGDLAALLTNLEPHDVLFVDEIHRLSPVVEEVLYPALED 133 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 FQLD+M+GEGP+ARS+K++L FTL+ ATTR GLLT+PL+DRFGI RL FY DL I Sbjct: 134 FQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYSAADLAQI 193 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V R A + + A EIA RSRGTPRIA RLLRRVRD+A+V + E+AD AL Sbjct: 194 VARSAGILNIGSDAAGAMEIARRSRGTPRIANRLLRRVRDYAQVKGDGRVGAELADRALR 253 Query: 252 RLAIDKMGFDQLDLRYL----TMIARNFGGG 278 L +D GFD +D R L + R GGG Sbjct: 254 MLKVDGNGFDAMDRRLLLGGDRKVRRRPGGG 284 >gi|302561708|ref|ZP_07314050.1| Holliday junction DNA helicase RuvB [Streptomyces griseoflavus Tu4000] gi|302479326|gb|EFL42419.1| Holliday junction DNA helicase RuvB [Streptomyces griseoflavus Tu4000] Length = 357 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 156/311 (50%), Positives = 212/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ + L + + AA+AR DHVL G PGLGKTTL+ ++A E+ Sbjct: 32 LRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLSMIIAAEMEAP 91 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 92 IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 151 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + L FTL+ ATTR GLL PL+DRFG + FYE +L+ +V R A L + Sbjct: 152 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELQRVVHRSAHLLDV 211 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA RSRGTPRIA RLLRRVRD+A+V ITR IA+AAL +D G D Sbjct: 212 EIDAHGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITRGIAEAALAVYEVDARGLD 271 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + + FGGGPVG+ T+S + E R+ +E++ EP+++++G + RTPRGR+ P Sbjct: 272 RLDRAVLEALLKLFGGGPVGLSTLSVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 331 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 332 AAWAHLGLAPP 342 >gi|257458849|ref|ZP_05623972.1| holliday junction DNA helicase RuvB [Campylobacter gracilis RM3268] gi|257443837|gb|EEV18957.1| holliday junction DNA helicase RuvB [Campylobacter gracilis RM3268] Length = 338 Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 159/309 (51%), Positives = 219/309 (70%), Gaps = 1/309 (0%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP + E++ GQ + SNL + I AAK RA+ LDHVLF GPPGLGKTTLA ++A ++G Sbjct: 18 SSLRPSSFEDYVGQEKIKSNLAIAIAAAKKRADVLDHVLFYGPPGLGKTTLAHIIAAQMG 77 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + T+ P+I KAGDLAA+LTNL+ DVLFIDEIHRLS +EE+LY AMEDF+LD+++G Sbjct: 78 AAIKVTAAPMIEKAGDLAAILTNLQSGDVLFIDEIHRLSPAIEEVLYSAMEDFRLDIIIG 137 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 GP+A+++KI++ FTLI ATTR G+++ PL+DRFG+ RL FY +L IVQ + Sbjct: 138 SGPAAQTIKIDIPHFTLIGATTRAGMISAPLRDRFGMQFRLQFYTHAELARIVQIASVKL 197 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 G +A+ EIA RSRGTPRIA RLLRR+RDFAEV I+ + A L L +D+ G Sbjct: 198 GKESAADASAEIARRSRGTPRIALRLLRRIRDFAEVRDEGAISHDRAREGLEALGVDEQG 257 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 FD++D++YL ++ + +G+ TI+A LSE IED+IEPY++ G+I++T +GR+ Sbjct: 258 FDEMDIKYLEILF-DAKHRALGLSTIAAALSEDEGTIEDVIEPYLLANGYIEKTAKGRIA 316 Query: 320 MPIAWQHLG 328 A + LG Sbjct: 317 TDKAREALG 325 >gi|148238521|ref|YP_001223908.1| Holliday junction DNA helicase B [Synechococcus sp. WH 7803] gi|166231564|sp|A5GI46|RUVB_SYNPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|147847060|emb|CAK22611.1| Holliday junction DNA helicase [Synechococcus sp. WH 7803] Length = 365 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 159/313 (50%), Positives = 211/313 (67%), Gaps = 1/313 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ E L + ++AA R EALDHVL GPPGLGKTT+A V+A ELGV Sbjct: 49 LRPKRLADYIGQRELKQVLGIAVQAAVGRGEALDHVLLYGPPGLGKTTMAMVLAEELGVT 108 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TS P + + D+ LL L+ +D+LFIDEIHRLS + EE+LYPAMED +LDL VG+G Sbjct: 109 CRITSAPALERPRDIVGLLVTLQPKDLLFIDEIHRLSRVAEELLYPAMEDRRLDLTVGKG 168 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+ ++L FTL+ ATTR G L++PL+DRFG+ RL FY +EDL+ IV+R A L L Sbjct: 169 STARTRALDLPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGLEDLQAIVERAAGLLDL 228 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRLAIDKMGF 260 ++ A EIA R RGTPRIA RLLRRVRD A V A A I + + D AL +D G Sbjct: 229 DLSAAACTEIARRCRGTPRIANRLLRRVRDVACVRACAGRIDQALVDEALTLHRVDGRGL 288 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D D R + ++ ++ GGGP G++T++A L E +E ++EPY++Q GF+QRTPRGR++ Sbjct: 289 DASDRRLMELLLQSHGGGPAGLDTLAAALGEDPATLESVVEPYLLQLGFLQRTPRGRVVT 348 Query: 321 PIAWQHLGIDIPH 333 HLG P Sbjct: 349 AAGRGHLGWPYPQ 361 >gi|224370134|ref|YP_002604298.1| Holliday junction DNA helicase RuvB [Desulfobacterium autotrophicum HRM2] gi|259495662|sp|C0QKP4|RUVB_DESAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|223692851|gb|ACN16134.1| RuvB [Desulfobacterium autotrophicum HRM2] Length = 354 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 155/315 (49%), Positives = 207/315 (65%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 + +++ LRP E + GQ + LK+ I+AAK R + LDHVL GPPGLGKTT++ ++ Sbjct: 33 DSSEVVSLRPDRFESYVGQTDTVETLKIAIQAAKMRGDCLDHVLLHGPPGLGKTTISHII 92 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+G TSGP + K GDL +LTNL D+LFIDEIHRL VEE LYPAMEDF + Sbjct: 93 ANEMGGTLTVTSGPALEKGGDLIGMLTNLARGDILFIDEIHRLPKTVEEFLYPAMEDFAV 152 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D + +G ARS + L +F L+ ATTRVGL+++PL+DRFGI L+FY E+L TI++R Sbjct: 153 DFVFDKGLHARSHRYRLKQFVLVGATTRVGLISSPLRDRFGIFRSLDFYTDEELVTIIRR 212 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + + D AA E+A RSRGTPRIA RLL+RVRDF+ V + +T++ AAL Sbjct: 213 SAGLLNVVLDDGAALELARRSRGTPRIANRLLKRVRDFSMVRSSGEVTQKSVAAALSLEG 272 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 ID G LD YL I + GGPVGIE ++A L E D + D++EPY+++ G + RT Sbjct: 273 IDSKGLTVLDRNYLRTIIEFYRGGPVGIEAVAATLQEETDTLVDVVEPYLLKIGMVMRTS 332 Query: 315 RGRLLMPIAWQHLGI 329 GR A++HLGI Sbjct: 333 AGRRASVGAYEHLGI 347 >gi|295396082|ref|ZP_06806265.1| crossover junction ATP-dependent DNA helicase RuvB [Brevibacterium mcbrellneri ATCC 49030] gi|294971023|gb|EFG46915.1| crossover junction ATP-dependent DNA helicase RuvB [Brevibacterium mcbrellneri ATCC 49030] Length = 356 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 149/318 (46%), Positives = 216/318 (67%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A + LRP+ L EF GQ + L + ++AAKA DHVL GPPGLGKTTLA ++ Sbjct: 32 ERAQEAALRPKGLAEFVGQKQVREQLSLVLDAAKAGKRTPDHVLLSGPPGLGKTTLAMII 91 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A+E+G + R TSGP + AGDLAA+L++L++ +VLFIDEIHR++ EE+LY AMEDF++ Sbjct: 92 AQEMGSHIRITSGPAVQHAGDLAAILSSLDEGEVLFIDEIHRVARAAEEMLYVAMEDFRV 151 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A ++ ++L FTL+ ATTR GLL PL+DRFG L+FY +DL+ +++R Sbjct: 152 DVIVGKGPGATAIPLDLPPFTLVGATTRSGLLPAPLRDRFGFTGHLDFYTSQDLQRVLER 211 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A + G+ + EIA RSRGTPRIA RLLRRVRD+A+V I + +AL Sbjct: 212 SAGMLGIEADEAGLAEIARRSRGTPRIANRLLRRVRDWAQVRGDGHIDLYASRSALNVYE 271 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D+LD L+++ F GGPVG+ T++ + E + +E++ EP+++++G + RTP Sbjct: 272 VDDRGLDRLDRAVLSVLCERFNGGPVGLSTLAVSVGEEPETVEEVAEPFLVREGLMTRTP 331 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ WQH+G+ P Sbjct: 332 RGRIATQTGWQHIGLTPP 349 >gi|325846491|ref|ZP_08169406.1| Holliday junction DNA helicase RuvB [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481249|gb|EGC84290.1| Holliday junction DNA helicase RuvB [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 279 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 146/273 (53%), Positives = 199/273 (72%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116 +L GPPGLGKTTL+ ++A ELGVN R TSGP I + DLA++LTNL+ DVLFIDEIHR Sbjct: 1 MLLQGPPGLGKTTLSNIIANELGVNIRITSGPAIERPSDLASILTNLDKGDVLFIDEIHR 60 Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176 ++ VEEILYPAMEDF LD++VG+GP+A+S++I+L +FTL+ ATTR G+L+ PL+DRFG+ Sbjct: 61 INRSVEEILYPAMEDFALDIIVGKGPNAQSIRIDLEKFTLVGATTRAGMLSAPLRDRFGV 120 Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236 + LN Y+ +DL IV+R A + + + ++ A EIA RSRGTPRIA RLL+RVRD+A V Sbjct: 121 LLSLNLYDTKDLTKIVKRSADILDIPIDEKGAFEIARRSRGTPRIANRLLKRVRDYAIVK 180 Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296 + I E + L L +D MG D +D + + + NF GGPVG++TI+A I Sbjct: 181 KDEIIDYETSCEGLELLEVDPMGLDNMDKKIVLTMHENFDGGPVGVDTIAASTGIENVTI 240 Query: 297 EDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 ED+ EPY++Q GF+ RTPRGR+L A++H G+ Sbjct: 241 EDVYEPYLLQIGFLTRTPRGRILTKKAYEHYGL 273 >gi|325963418|ref|YP_004241324.1| Holliday junction DNA helicase subunit RuvB [Arthrobacter phenanthrenivorans Sphe3] gi|323469505|gb|ADX73190.1| Holliday junction DNA helicase subunit RuvB [Arthrobacter phenanthrenivorans Sphe3] Length = 362 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 154/319 (48%), Positives = 211/319 (66%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E A + LRP+ L++F GQ L + ++A++ R + DHVLF GPPGLGKTTLA + Sbjct: 14 EERAIEAALRPKNLDDFVGQHRVRKQLSLVLKASRMRGRSADHVLFSGPPGLGKTTLAMI 73 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+ R +SGP I AGDLAA+L++L + +VLF+DEIHR+S EE+LY AMEDF+ Sbjct: 74 VAAEMNAPLRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSRPAEEMLYMAMEDFR 133 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D++VG+G A ++ + L FTL+ ATTR GLL PL+DRFG L FY + +L+ +++ Sbjct: 134 VDIVVGKGAGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVPELELVLR 193 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L L V EIA RSRGTPRIA RLLRRVRD+A V + I A AAL Sbjct: 194 RSAGLLDLKVNSAGFTEIAGRSRGTPRIANRLLRRVRDWALVHDIEQIDARAASAALDMY 253 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +DK G D+LD L + FGGGPVG+ T++ + E + +E + EP+++++G + RT Sbjct: 254 EVDKKGLDRLDRAVLEALITKFGGGPVGLATLAIAVGEETETVETVAEPFLVREGLLGRT 313 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ M AW HLG IP Sbjct: 314 PRGRIAMAPAWTHLGYSIP 332 >gi|87123213|ref|ZP_01079064.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RS9917] gi|86168933|gb|EAQ70189.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RS9917] Length = 352 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 160/308 (51%), Positives = 211/308 (68%), Gaps = 1/308 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR LE++ GQ E L + ++AA R +ALDHVL GPPGLGKTT+A V+A ELGV+ Sbjct: 36 LRPRRLEDYIGQPELKQVLAIAVQAALGRGDALDHVLLYGPPGLGKTTMALVLAEELGVS 95 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TS P + + D+ LL NL+ ++LFIDEIHRL+ + EE+LYPAMED +LDL VG+G Sbjct: 96 CRITSAPALERPRDIVGLLVNLQPNELLFIDEIHRLTRVAEELLYPAMEDRRLDLTVGKG 155 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+ + L FTL+ ATTR G L++PL+DRFG+ RL FY EDL+ IV+R A L GL Sbjct: 156 STARTRTLELPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGQEDLEAIVERAAGLLGL 215 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADAALLRLAIDKMGF 260 +T +A EIA R RGTPRIA RLLRRVRD A V + I + D AL +D G Sbjct: 216 RLTPQACAEIAGRCRGTPRIANRLLRRVRDVACVRDVEGAIDAALVDDALRLHRVDGRGL 275 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D D R L ++ + GGGPVG++T++A L E +E ++EPY++Q GF+QRTPRGR++ Sbjct: 276 DASDRRLLELLLQAHGGGPVGLDTLAAALGEDPTTLEAVVEPYLLQLGFLQRTPRGRVVT 335 Query: 321 PIAWQHLG 328 +HLG Sbjct: 336 AAGREHLG 343 >gi|302550159|ref|ZP_07302501.1| Holliday junction DNA helicase RuvB [Streptomyces viridochromogenes DSM 40736] gi|302467777|gb|EFL30870.1| Holliday junction DNA helicase RuvB [Streptomyces viridochromogenes DSM 40736] Length = 356 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 153/311 (49%), Positives = 214/311 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+EF GQ + L + + AA+AR DHVL G PGLGKTTL+ ++A E+G Sbjct: 31 LRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLSMIIAAEMGAP 90 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 91 IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 150 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + L FTL+ ATTR GLL PL+DRFG + FYE +L+ ++ R A L + Sbjct: 151 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELERVIHRSANLLEV 210 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A EIA RSRGTPRIA RLLRRVRD+A+V IT++IA AAL +D+ G D Sbjct: 211 EIEPHGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGLITQDIAAAALAVYEVDERGLD 270 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + + F GGPVG+ T++ + E R+ +E++ EP+++++G + RTPRGR+ P Sbjct: 271 RLDRAVLEALLKLFSGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 330 Query: 322 IAWQHLGIDIP 332 AW HLG+ P Sbjct: 331 AAWAHLGLTPP 341 >gi|116071674|ref|ZP_01468942.1| Holliday junction DNA helicase RuvB [Synechococcus sp. BL107] gi|116065297|gb|EAU71055.1| Holliday junction DNA helicase RuvB [Synechococcus sp. BL107] Length = 347 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 162/307 (52%), Positives = 206/307 (67%), Gaps = 1/307 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ E L + +EAA R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 37 LRPKRLAEYIGQSELKQVLGIAVEAALGRGEALDHVLLYGPPGLGKTTMALVLAEELGVN 96 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TS P + + D+ LL NL+ RD+LFIDEIHRLS + EE+LYPAMED +LDL VG+G Sbjct: 97 CRITSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLSRVAEELLYPAMEDRRLDLTVGKG 156 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+ ++L FTL+ ATTR G L++PL+DRFG+ RL FY DL+ IV R A+L + Sbjct: 157 STARTRTLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGQADLEAIVARTAELVSV 216 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADAALLRLAIDKMGF 260 +T A IA RGTPRIA RLLRRVRD A V K TI + AL +D+ G Sbjct: 217 DLTCAACARIAASCRGTPRIANRLLRRVRDVASVRQGKGTIDDCMVAEALSLHRVDQRGL 276 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D D R LTM+ GGGPVG+ET++A L E +E ++EP+++QQG + RTPRGR++ Sbjct: 277 DASDRRLLTMLVDQHGGGPVGLETLAAALGEDPVTLETVVEPFLLQQGLLVRTPRGRMVT 336 Query: 321 PIAWQHL 327 A HL Sbjct: 337 DAARSHL 343 >gi|148272995|ref|YP_001222556.1| Holliday junction DNA helicase RuvB [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|167012668|sp|A5CS06|RUVB_CLAM3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|147830925|emb|CAN01869.1| Holliday junction DNA helicase subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 359 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 155/329 (47%), Positives = 216/329 (65%), Gaps = 4/329 (1%) Query: 5 EGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 G S V + DA+++ LRPR+L EF GQV+ L++ + AA + + DH+L G Sbjct: 6 HGDASSPVPESDAELAFEGALRPRSLSEFVGQVKVRGQLELLLTAAAMQNRSPDHILLAG 65 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA +VA E R TSGP I AGDLAA+L+ L ++LF+DEIHR++ Sbjct: 66 PPGLGKTTLAMIVAEESRRPLRLTSGPAIQHAGDLAAVLSALVPGEILFVDEIHRMARSA 125 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMED+++D+MVG+G A S+ + LS FTL+ ATTR G+L +PL+DRFG L Sbjct: 126 EEMLYLAMEDYRIDIMVGKGAGATSIPLELSPFTLVGATTRSGMLPSPLRDRFGFTAHLE 185 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FYE +L+ +++R A++ L + EA EIA R RGTPRIA RLLRRVRD+A V H Sbjct: 186 FYETHELEQVIERAARMLHLEIEHEAVAEIAGRCRGTPRIANRLLRRVRDYALV-HGTEA 244 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 E AAL +D +G D+LD + I FGGGPVG+ T++ + E + IE ++E Sbjct: 245 GLESVRAALDLYDVDPLGLDRLDRAVMRGILTRFGGGPVGLNTLAVSVGEEAETIESVVE 304 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 P++++ G + RTPRGR+ P AW+H G++ Sbjct: 305 PFLVRIGLVTRTPRGRVATPAAWEHFGLE 333 >gi|326773261|ref|ZP_08232544.1| holliday junction DNA helicase RuvB [Actinomyces viscosus C505] gi|326636491|gb|EGE37394.1| holliday junction DNA helicase RuvB [Actinomyces viscosus C505] Length = 346 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 159/322 (49%), Positives = 219/322 (68%), Gaps = 3/322 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + E A + LRP+ LE+FTGQ L V + +A AR DHVL GPPGLGKTTLA Sbjct: 19 ATERAAEAALRPKRLEDFTGQEVVRGQLSVVLRSALARGVTADHVLLSGPPGLGKTTLAM 78 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+ + R TSGP I AGDLAA+L++LE+ DVLFIDEIHRL+ EE+LY AMEDF Sbjct: 79 IIAAEVDGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLARTAEEMLYLAMEDF 138 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 ++D++VG+GP A S+ ++L FT++ ATTR GLL PL+DRFG L++Y +L I+ Sbjct: 139 RVDIVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLDYYGPGELTRIL 198 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAAL 250 R A L G+++ +AA E+A RSRGTPRIA RLLRRV+D+AEV H + + E A AL Sbjct: 199 TRSAGLLGVSLEADAAKELASRSRGTPRIANRLLRRVQDWAEV-HGRPGRLDLEAARGAL 257 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +D +G D+LD + L + FGGGPVG+ T++ + E + +E + EPY++++G + Sbjct: 258 DVFEVDALGLDRLDRQVLEALCTRFGGGPVGLTTLAVSVGEEPETVETVAEPYLVREGLV 317 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 RTPRGR P A+ HLG++ P Sbjct: 318 VRTPRGRAATPAAYTHLGLEPP 339 >gi|220912785|ref|YP_002488094.1| Holliday junction DNA helicase RuvB [Arthrobacter chlorophenolicus A6] gi|254767407|sp|B8H9D6|RUVB_ARTCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|219859663|gb|ACL40005.1| Holliday junction DNA helicase RuvB [Arthrobacter chlorophenolicus A6] Length = 361 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 154/319 (48%), Positives = 210/319 (65%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E A + LRP+ L++F GQ L + ++A++ R + DHVLF GPPGLGKTTLA + Sbjct: 14 EERAIEAALRPKNLDDFVGQHRVRKQLSLVLKASRMRGRSADHVLFSGPPGLGKTTLAMI 73 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 VA E+ R +SGP I AGDLAA+L++L + +VLF+DEIHR+S EE+LY AMEDF+ Sbjct: 74 VAAEMNAPLRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSRPAEEMLYMAMEDFR 133 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D++VG+G A ++ + L FTL+ ATTR GLL PL+DRFG L FY + +L+ +++ Sbjct: 134 VDIVVGKGAGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVPELELVLR 193 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R A L L V EIA RSRGTPRIA RLLRRVRD+A V I A AAL Sbjct: 194 RSAGLLDLKVNSAGFSEIAGRSRGTPRIANRLLRRVRDWALVHGVDQIDARSASAALDMY 253 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +DK G D+LD L + FGGGPVG+ T++ + E + +E + EP+++++G + RT Sbjct: 254 EVDKKGLDRLDRSVLEALITKFGGGPVGLSTLAIAVGEETETVETVAEPFLVREGLLGRT 313 Query: 314 PRGRLLMPIAWQHLGIDIP 332 PRGR+ M AW HLG IP Sbjct: 314 PRGRIAMAPAWTHLGYAIP 332 >gi|116670848|ref|YP_831781.1| Holliday junction DNA helicase RuvB [Arthrobacter sp. FB24] gi|171855197|sp|A0JXB1|RUVB_ARTS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116610957|gb|ABK03681.1| Holliday junction DNA helicase subunit RuvB [Arthrobacter sp. FB24] Length = 362 Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 151/311 (48%), Positives = 206/311 (66%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L +F GQ L + +EA++ R + DHVL GPPGLGKTTL+ ++A E+ Sbjct: 22 LRPKNLHDFVGQHRVRKQLSLVLEASRMRGRSADHVLLSGPPGLGKTTLSMIIAAEMNAP 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R +SGP I AGDLAA+L++L + +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 82 LRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A ++ + L FTL+ ATTR GLL PL+DRFG L FY +E+L+ +++R A L L Sbjct: 142 AGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVEELELVLRRSAGLLDL 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V EIA RSRGTPRIA RLLRRVRD+A V + I A AAL +DK G D Sbjct: 202 KVNSAGFSEIAGRSRGTPRIANRLLRRVRDWALVHGIEQIDARTASAALDMYEVDKRGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + FGGGPVG+ T++ + E + +E + EPY++++G + RTPRGR+ M Sbjct: 262 RLDRSVLEALITKFGGGPVGLSTLAIAVGEEPETVETVAEPYLVREGLLGRTPRGRIAMA 321 Query: 322 IAWQHLGIDIP 332 AW HLG +P Sbjct: 322 PAWTHLGYAVP 332 >gi|297621195|ref|YP_003709332.1| Holliday junction ATP-dependent DNA helicase ruvB [Waddlia chondrophila WSU 86-1044] gi|297376496|gb|ADI38326.1| Holliday junction ATP-dependent DNA helicase ruvB [Waddlia chondrophila WSU 86-1044] Length = 332 Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 154/320 (48%), Positives = 212/320 (66%), Gaps = 1/320 (0%) Query: 7 LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 + +++ED + LRP++L +F GQ L+V I AAK R + L H LF GPPGL Sbjct: 4 FIESTLTEEDKTFEVPLRPQSLSDFQGQDLVRERLEVLITAAKQRGDPLTHCLFTGPPGL 63 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTLA ++A+ +G N TSGP+I K GDLA +LTNL D LFIDE+HRL+ VEE L Sbjct: 64 GKTTLANILAKSMGTNLVVTSGPMIEKPGDLAGILTNLHCGDFLFIDELHRLNRSVEEYL 123 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF LDLM+ GP+ARSV++ L+ F+L+ ATTR GLLT PL+ RFG RL++Y Sbjct: 124 YSAMEDFTLDLMIDTGPNARSVQVKLNPFSLVGATTRTGLLTAPLRSRFGFTCRLDYYTP 183 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 + L+ IV R A + +++ E A EIA RSRGTPRIA LL+ VRDF++V + ++ Sbjct: 184 QVLEKIVLRAASIINFSLSAEEAYEIARRSRGTPRIANNLLKWVRDFSQVRNGGKTNLDL 243 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AL L ID+ G D++D++ L ++ + GGPVGI TI+ + E + +E++ EPY+I Sbjct: 244 VVQALDMLHIDEQGLDEMDIKILEVMLEQYNGGPVGISTIAVAVGEEKHTLEEVYEPYLI 303 Query: 306 QQGFIQRTPRGRLLMPIAWQ 325 GFI+RT RGR L + + Sbjct: 304 LLGFIKRTLRGRELTQLGMK 323 >gi|213859992|ref|ZP_03385696.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 240 Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 149/238 (62%), Positives = 188/238 (78%), Gaps = 1/238 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 >gi|320534403|ref|ZP_08034886.1| Holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 171 str. F0337] gi|320133378|gb|EFW25843.1| Holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 171 str. F0337] Length = 346 Score = 302 bits (773), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 161/334 (48%), Positives = 224/334 (67%), Gaps = 4/334 (1%) Query: 2 MDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 +DR+ L+ + E A + LRP+ LE+FTGQ L V + +A AR DHVL Sbjct: 7 LDRQRLVGGGADATERAAEAALRPKRLEDFTGQEVVRGQLSVVLRSALARGVTADHVLLS 66 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+ + R TSGP I AGDLAA+L++LE+ DVLFIDEIHRL+ Sbjct: 67 GPPGLGKTTLAMIIAAEVDGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLART 126 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D++VG+GP A S+ ++L FT++ ATTR GLL PL+DRFG L Sbjct: 127 AEEMLYLAMEDFRVDIVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHL 186 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 ++Y +L I+ R A L G+++ +AA E+A RSRGTPRIA RLLRRV+D+AEV H + Sbjct: 187 DYYGPGELTRILTRSAGLLGVSLEADAAKELASRSRGTPRIANRLLRRVQDWAEV-HGRP 245 Query: 241 --ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 + A AL +D +G D+LD + L + FGGGPVG+ T++ + E + +E Sbjct: 246 GRLDLTAARGALDVFEVDALGLDRLDRQVLEALCTRFGGGPVGLTTLAVSVGEEPETVET 305 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 + EPY++++G + RTPRGR P A+ HLG++ P Sbjct: 306 VAEPYLVREGLVVRTPRGRAATPAAYSHLGLEPP 339 >gi|206603018|gb|EDZ39498.1| Holliday junction DNA helicase (RuvB) [Leptospirillum sp. Group II '5-way CG'] Length = 332 Score = 302 bits (773), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 153/319 (47%), Positives = 213/319 (66%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+ +E D +LLRPRT + + GQ + +LKV I+AA R + LDH+L GPPGLG Sbjct: 9 LIPEEFPEEIPDTNLLRPRTFDHYVGQKDVIDSLKVAIQAALLREDTLDHILLHGPPGLG 68 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA +VAR +GV+F ++SGP + K GDL +LT L +LFIDEIHRL VEEILY Sbjct: 69 KTTLAALVARAMGVSFLASSGPALEKGGDLVGILTRLAPGTLLFIDEIHRLPRPVEEILY 128 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMEDF +D++ G +AR+ + L FTL+ ATTR GLL+ PL+DRFGI L+FY+ Sbjct: 129 SAMEDFSIDVVFDRGAAARTFRHRLPPFTLVGATTRAGLLSAPLRDRFGIQRDLDFYQPS 188 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L I++R A + G+ + E + EI RSRGTPRIA RLL+RVRDF++V I+R++A Sbjct: 189 ELARILERSAGILGIGIDPEGSLEIGRRSRGTPRIANRLLKRVRDFSQVNGHPVISRDVA 248 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 AL ID G +++D R++ I + GGPVGIE ++A L D + D++EPY+++ Sbjct: 249 HQALRMEGIDDRGLNRIDRRFIETIRVVYNGGPVGIEAMAATLQMDPDTLIDVVEPYLLK 308 Query: 307 QGFIQRTPRGRLLMPIAWQ 325 +G++ RTP GR L W+ Sbjct: 309 EGYLARTPAGRRLTASGWE 327 >gi|24213510|ref|NP_710991.1| Holliday junction DNA helicase B [Leptospira interrogans serovar Lai str. 56601] gi|45658642|ref|YP_002728.1| Holliday junction DNA helicase RuvB [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|44888500|sp|Q8F7Y2|RUVB_LEPIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|47606087|sp|P61534|RUVB_LEPIC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|24194290|gb|AAN48009.1| holliday junction DNA helicase B [Leptospira interrogans serovar Lai str. 56601] gi|45601886|gb|AAS71365.1| holliday junction DNA helicase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 341 Score = 301 bits (772), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 149/308 (48%), Positives = 208/308 (67%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP L EF GQ E +NL V+++AAK R ALDHVL GPPGLGKTTLA +++ ELG Sbjct: 17 SGLRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTLAGIISNELG 76 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 TS PVI K DLA LLT++ + ++LFIDEIH L +EEILYPAME++ +DL++G Sbjct: 77 TRLTITSAPVITKGADLARLLTSMGENEILFIDEIHTLPKKLEEILYPAMENYMIDLVIG 136 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 EG +A+ V+I L FTL+ ATTR GL++ PL+ RFGI +RL++Y E++K IV R +K+ Sbjct: 137 EGVTAQMVQIPLKPFTLVGATTRSGLISEPLKSRFGIQLRLDYYNDEEMKQIVLRSSKIL 196 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 G+ + D+AA EI RSR TPRIA LL+R+RDF+EV ++ + + A ++ ID +G Sbjct: 197 GVLIEDDAALEIGKRSRKTPRIANHLLKRIRDFSEVEGNLSVKKNLCLKAFEKMGIDDLG 256 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D +D + L + + GGPVG++ I+ + E IED E +M++ G I RTP GR+ Sbjct: 257 LDGMDRQILDCMIDRYKGGPVGLKAIAVVVGEEEKTIEDTYESFMVRIGLINRTPAGRVA 316 Query: 320 MPIAWQHL 327 A++ L Sbjct: 317 TEKAYRQL 324 >gi|289523149|ref|ZP_06440003.1| holliday junction DNA helicase RuvB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503692|gb|EFD24856.1| holliday junction DNA helicase RuvB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 345 Score = 301 bits (772), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 160/309 (51%), Positives = 217/309 (70%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP+ L EF GQ + L +FI+AAK+R E LDH LF GPPGLGKTTLA VVA E+G Sbjct: 21 FIRPKRLCEFIGQAKVIDKLSMFIKAAKSRDEPLDHTLFCGPPGLGKTTLAGVVAHEMGG 80 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 ++T+GP I++ GDLAA+L++L+ +DVLFIDEIHRLS VEE+LY AMEDF L++++G+ Sbjct: 81 ELKTTTGPAISRTGDLAAILSSLKAKDVLFIDEIHRLSPQVEEVLYSAMEDFFLNIIIGK 140 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GP ARS+K+ L +FTLI ATT+ LL+ PL+ RFGI +L +Y ++L I+ RGA + Sbjct: 141 GPMARSIKLTLPKFTLIGATTKPTLLSAPLRGRFGIIEQLEYYSTDELAEILVRGASVLE 200 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + + +EAA EIA RSRGTPRIA RLL+RVRD AE +T IA AL L ID G Sbjct: 201 VNLDEEAAMEIAKRSRGTPRIALRLLKRVRDIAEAKKESKVTVAIAKKALDLLGIDDDGI 260 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D + + L +I F GGPVG+ T++A +SE +E++ EPY+++ G I+RT GR+ Sbjct: 261 DDQERKLLDVIVNLFDGGPVGLSTLAAAMSEEERTVEEIYEPYLLRNGLIERTRGGRMAT 320 Query: 321 PIAWQHLGI 329 A++ LGI Sbjct: 321 RKAYERLGI 329 >gi|289706227|ref|ZP_06502590.1| Holliday junction DNA helicase RuvB [Micrococcus luteus SK58] gi|289557066|gb|EFD50394.1| Holliday junction DNA helicase RuvB [Micrococcus luteus SK58] Length = 340 Score = 301 bits (772), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 154/311 (49%), Positives = 209/311 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L+EF GQ+ L + + +A+ R A DHVL GPPGLGKTTLA +VA E+ Sbjct: 24 LRPRHLDEFVGQMRVREQLDLMLASARLRDRAADHVLLSGPPGLGKTTLAMIVAAEMNAP 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R +SGP I AGDLAA+L++L + +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 84 LRLSSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A S+ + L FTL+ ATTR GLL PL+DRFG L+FY E+L+ +++R A L + Sbjct: 144 AGATSIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLDFYTEEELERVLRRSALLLDM 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E +IA RSRGTPRIA RLLRRVRD+A V + A AAL +D G D Sbjct: 204 RLATEGYRQIARRSRGTPRIANRLLRRVRDWALVKGLAEVGAHDAAAALDMYDVDGRGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD LT + FGGGPVG+ T++ + E + +E + EP++I++G + RTPRGR+ +P Sbjct: 264 RLDRSVLTALCTTFGGGPVGLSTLATAVGEEAETVETVAEPFLIREGMVARTPRGRVALP 323 Query: 322 IAWQHLGIDIP 332 AW+HLGI P Sbjct: 324 GAWEHLGIAAP 334 >gi|239917789|ref|YP_002957347.1| Holliday junction DNA helicase subunit RuvB [Micrococcus luteus NCTC 2665] gi|281413718|ref|ZP_06245460.1| Holliday junction DNA helicase RuvB [Micrococcus luteus NCTC 2665] gi|239838996|gb|ACS30793.1| Holliday junction DNA helicase subunit RuvB [Micrococcus luteus NCTC 2665] Length = 340 Score = 301 bits (771), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 152/311 (48%), Positives = 210/311 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+EF GQ+ L + + +A+ R A DHVL GPPGLGKTTLA +VA E+ Sbjct: 24 LRPKHLDEFVGQMRVREQLDLMLASARLRDRAADHVLLSGPPGLGKTTLAMIVAAEMNAP 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R +SGP I AGDLAA+L++L + +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 84 LRLSSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A S+ + L FTL+ ATTR GLL PL+DRFG L+FY E+L+ +++R A L + Sbjct: 144 AGATSIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLDFYTEEELERVLRRSALLLDM 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E +IA RSRGTPRIA RLLRRVRD+A V + A AAL +D G D Sbjct: 204 RLATEGYRQIARRSRGTPRIANRLLRRVRDWALVKGLAEVGAHDAAAALDMYDVDGRGLD 263 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD LT + FGGGPVG+ T++ + E + +E + EP++I++G + RTPRGR+ +P Sbjct: 264 RLDRSVLTALCTTFGGGPVGLSTLATAVGEESETVETVAEPFLIREGMVARTPRGRVALP 323 Query: 322 IAWQHLGIDIP 332 AW+HLG+ +P Sbjct: 324 GAWEHLGLAVP 334 >gi|239933509|ref|ZP_04690462.1| Holliday junction DNA helicase RuvB [Streptomyces ghanaensis ATCC 14672] gi|291441881|ref|ZP_06581271.1| holliday junction DNA helicase B [Streptomyces ghanaensis ATCC 14672] gi|291344776|gb|EFE71732.1| holliday junction DNA helicase B [Streptomyces ghanaensis ATCC 14672] Length = 383 Score = 301 bits (771), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 155/308 (50%), Positives = 209/308 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+ F GQ L + + AA+AR DHVLF G PGLGKTTL+ ++A E+G Sbjct: 40 LRPTDLDGFIGQERVREQLDLVLRAARARGATADHVLFSGAPGLGKTTLSMIIAAEMGAP 99 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 FR TSGP I AGDLAA+L++L + +VLF+DEIHR+S EE+LY AMEDF++D++VG G Sbjct: 100 FRITSGPAIQHAGDLAAVLSSLTEGEVLFLDEIHRMSRSAEEMLYMAMEDFRVDVVVGTG 159 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A + + L FTL+ ATTR GLL PL+DRFG + FY +L+ ++ R A+L + Sbjct: 160 LGATPIPLELPPFTLVGATTRAGLLVPPLRDRFGFTAHMEFYAPAELERVIHRSARLLDV 219 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A+ E A EIA RSRGTPRIA RLLRRVRD+A+V +TRE+A AAL ID G D Sbjct: 220 AIEPEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVVTREVASAALAVYEIDGRGLD 279 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + FGGGPVG+ T++ + E R+ +E++ EP+++++G + RTPRGR+ P Sbjct: 280 RLDRAVLGALLSLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 339 Query: 322 IAWQHLGI 329 AW HLG+ Sbjct: 340 AAWAHLGL 347 >gi|168333337|ref|ZP_02691621.1| Holliday junction DNA helicase RuvB [Epulopiscium sp. 'N.t. morphotype B'] Length = 328 Score = 301 bits (771), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 154/321 (47%), Positives = 220/321 (68%), Gaps = 8/321 (2%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 +LS + ED++ ++ RP +L E+ GQ A +L++FI+AAK R E+LDHVL GPPGLG Sbjct: 5 ILSAELQLEDSETTI-RPVSLAEYIGQEAAKESLEIFIKAAKRRKESLDHVLLYGPPGLG 63 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA V++ E+ F+ TSGP I K GD+AA+L NL+ D+LFIDEIHR+ VEE+LY Sbjct: 64 KTTLAGVISNEMATGFKVTSGPAIEKPGDIAAILNNLKSGDILFIDEIHRMPRFVEEVLY 123 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMEDF +D++VG+G A+S++++L +FTLI ATT+ GLL++PL+ FGI RL +Y ++ Sbjct: 124 SAMEDFYIDILVGKGEMAKSIRLDLPKFTLIGATTKAGLLSSPLRXXFGIIQRLEYYTLD 183 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +L I+ R A + + AA EIA +RGTPR+A R L+RVRD E+ + K +I Sbjct: 184 ELTAIIMRTAAILNTPIEIVAAMEIAKCARGTPRLANRFLKRVRDIVEIKYDKL---KIG 240 Query: 247 DA----ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 DA AL L +D+ G D+LD + L I F GGPVG+ ++A L+E + +ED+ EP Sbjct: 241 DAECVMALELLGLDEYGLDELDRKILATIKNTFDGGPVGLSALAATLAEEVETLEDVYEP 300 Query: 303 YMIQQGFIQRTPRGRLLMPIA 323 Y++Q+G I+RT GR+L A Sbjct: 301 YLLQKGLIKRTRSGRMLTEAA 321 >gi|78183746|ref|YP_376180.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CC9902] gi|97190400|sp|Q3B0J1|RUVB_SYNS9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|78168040|gb|ABB25137.1| Holliday junction DNA helicase subunit RuvB [Synechococcus sp. CC9902] Length = 347 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 160/307 (52%), Positives = 205/307 (66%), Gaps = 1/307 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ E L + +EAA R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 37 LRPKRLSEYIGQSELKQVLGIAVEAALGRGEALDHVLLYGPPGLGKTTMALVLAEELGVN 96 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TS P + + D+ LL NL+ RD+LFIDEIHRLS + EE+LYPAMED +LDL VG+G Sbjct: 97 CRITSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLSRVAEELLYPAMEDRRLDLTVGKG 156 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+ ++L FTL+ ATTR G L++PL+DRFG+ RL FY DL+ IV R A+L + Sbjct: 157 STARTRTLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGQTDLEAIVARTAELVSV 216 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADAALLRLAIDKMGF 260 +T +A IA RGTPRIA RLLRRVRD A V K TI + AL +D G Sbjct: 217 DLTFDACARIAASCRGTPRIANRLLRRVRDVASVRQGKGTIDDAMVAEALSLHRVDHRGL 276 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D D R L M+ GGGPVG+ET++A L E +E ++EP+++QQG + RTPRGR++ Sbjct: 277 DASDRRLLAMLMDQHGGGPVGLETLAAALGEDPVTLETVVEPFLLQQGLLVRTPRGRMVT 336 Query: 321 PIAWQHL 327 A H+ Sbjct: 337 DAARSHI 343 >gi|325068880|ref|ZP_08127553.1| Holliday junction DNA helicase RuvB [Actinomyces oris K20] Length = 346 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 158/322 (49%), Positives = 218/322 (67%), Gaps = 3/322 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + E A + LRP+ LE+FTGQ L V + +A AR DHVL GPPGLGKTTLA Sbjct: 19 ATERAAEAALRPKRLEDFTGQEVVRGQLSVVLRSALARGVTADHVLLSGPPGLGKTTLAM 78 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+ + R TSGP I AGDLAA+L++LE+ DVLFIDEIHRL+ EE+LY AMEDF Sbjct: 79 IIAAEVDGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLARTAEEMLYLAMEDF 138 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 ++D++VG+GP A S+ ++L FT++ ATTR GLL PL+DRFG L++Y +L I+ Sbjct: 139 RVDIVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLDYYGPSELTRIL 198 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAAL 250 R A L G+++ +AA E+A RSRGTPRIA RLLRRV+D+AEV H + + A AL Sbjct: 199 TRSAGLLGVSLEADAAKELASRSRGTPRIANRLLRRVQDWAEV-HGRPGRLDLTAARGAL 257 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +D +G D+LD + L + FGGGPVG+ T++ + E + +E + EPY++++G + Sbjct: 258 DVFEVDALGLDRLDRQVLEALCTRFGGGPVGLTTLAVSVGEEPETVETVAEPYLVREGLV 317 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 RTPRGR P A+ HLG++ P Sbjct: 318 VRTPRGRAATPAAYGHLGLEPP 339 >gi|251771978|gb|EES52550.1| Holliday junction DNA helicase (RuvB) [Leptospirillum ferrodiazotrophum] Length = 346 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 157/306 (51%), Positives = 207/306 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT +E+ GQ L++ IEAA AR E LDH+L GPPGLGKTTLA ++A + V Sbjct: 30 IRPRTFDEYVGQEAVIEGLQISIEAATARGECLDHILLHGPPGLGKTTLASLIAGAMDVP 89 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F +TSGPV+ K GDL +L+ L R VLFIDEIHRL VEEILY AMEDF +D++ G Sbjct: 90 FLTTSGPVLEKGGDLVGILSRLAPRTVLFIDEIHRLPRAVEEILYGAMEDFAIDVIFDRG 149 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 PSAR+ + L FTL+ ATTR GLL+ PL+DRFGI L+FY ++L I+ R + + G Sbjct: 150 PSARTFRHQLPPFTLVGATTRAGLLSAPLRDRFGIFQDLDFYRPDELVRILLRSSAVLGF 209 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ +EAA EI RSRGTPRIA RLLRRVRDFA+V +TRE+ AL ID +G + Sbjct: 210 SLPEEAALEIGCRSRGTPRIANRLLRRVRDFAQVRARGIVTRELVVEALRIEGIDDLGLN 269 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D + L+ I +GGGPVG+E ++A L D I D++EPY++++G I RTP GR L Sbjct: 270 RVDRKVLSTIGTVYGGGPVGVEALAATLQIEVDTIIDVVEPYLLKEGLIARTPSGRRLTE 329 Query: 322 IAWQHL 327 + L Sbjct: 330 YGQKRL 335 >gi|257425765|ref|ZP_05602189.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus 55/2053] gi|257271459|gb|EEV03605.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp. aureus 55/2053] Length = 281 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 141/269 (52%), Positives = 197/269 (73%) Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 F+ PPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+ DVLFIDEIHRLS Sbjct: 5 FLAPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLS 64 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 +VEE+LYPAMEDF LD+++G+G ARS++I+L FTL+ ATTR G LT PL+DRFG+ + Sbjct: 65 SVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHL 124 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL +Y DLK I+ R A++ G + +E+A E+A RSRGTPR+A RLL+RVRDF +V Sbjct: 125 RLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNED 184 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 + I E AL L +D+ G D +D + + I + + GGPVG++TI+ + E R IED Sbjct: 185 EQIYIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIED 244 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHL 327 + EP++IQ+GF++RTPRGR P+A++H Sbjct: 245 VYEPFLIQKGFLERTPRGRKATPLAYEHF 273 >gi|322378944|ref|ZP_08053358.1| RuvB protein [Helicobacter suis HS1] gi|322379798|ref|ZP_08054095.1| Holliday junction DNA helicase B [Helicobacter suis HS5] gi|321147766|gb|EFX42369.1| Holliday junction DNA helicase B [Helicobacter suis HS5] gi|321148620|gb|EFX43106.1| RuvB protein [Helicobacter suis HS1] Length = 335 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 148/312 (47%), Positives = 213/312 (68%), Gaps = 1/312 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +E+ GQ L+V I A K R + LDH+LF GPPGLGKTTL+ ++A+EL Sbjct: 20 LRPSLWKEYIGQEPLKKLLQVSIMATKKRGDTLDHILFFGPPGLGKTTLSYIIAKELNTP 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K GDLAA+LTNL+ +++LFIDEIHRLS +EE+LYPAMEDF+LD+++G Sbjct: 80 IKVTTAPMIEKTGDLAAILTNLKPKEILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSK 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +A+++KI+L+ FTLI ATTR G+L+NPL+DRFG+ RL FY I +L TI + + Sbjct: 140 AAAQTIKIDLAPFTLIGATTRAGMLSNPLRDRFGMHFRLEFYSIAELSTITTQASLKLRK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +A+ EIA R RGTPRIA RLLRRVRDFA+ A +I AL L ++ G D Sbjct: 200 PIEPKASLEIASRCRGTPRIALRLLRRVRDFADSAGKDSIDLATTQLALEALGVNAYGLD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LDLRYL ++A N P+G+ T++A + E +E+++EP+++ G+++RT +GR+ P Sbjct: 260 TLDLRYLELLA-NAKNRPLGLSTLAASMHEDESTLEEVVEPFLLANGYLERTAKGRIATP 318 Query: 322 IAWQHLGIDIPH 333 ++ L + P Sbjct: 319 KTYEILKLRPPQ 330 >gi|116328923|ref|YP_798643.1| Holliday junction DNA helicase B [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122283294|sp|Q04YY5|RUVB_LEPBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116121667|gb|ABJ79710.1| Holliday junction DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 341 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 149/308 (48%), Positives = 208/308 (67%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP L EF GQ E +NL V+++AAK R ALDHVL GPPGLGKTTLA +V+ ELG Sbjct: 17 SGLRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTLAGIVSNELG 76 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 TS PVI K DLA LLT++ + ++LFIDEIH L +EEILYPAME++ +DL++G Sbjct: 77 TRLTITSAPVITKGADLARLLTSMGENEILFIDEIHTLHKKLEEILYPAMENYMIDLVIG 136 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 EG +A+ V+I L FTL+ ATTR GL++ PL+ RFGI +RL++Y E++K IV R +++ Sbjct: 137 EGVTAQMVQIPLKPFTLVGATTRSGLISEPLKSRFGIQLRLDYYNDEEMKEIVLRSSRIL 196 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 G+ + D+AA EI RSR TPRIA LL+R+RDF+EV ++ + + A ++ ID +G Sbjct: 197 GVKIEDDAALEIGKRSRKTPRIANHLLKRIRDFSEVEGNLSVKKGLCLKAFEKMGIDDLG 256 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D +D + L + + GGPVG++ I+ + E IED E +M++ G I RTP GR+ Sbjct: 257 LDGMDRQILGCMIDRYKGGPVGLKAIAVVVGEEEKTIEDTYESFMVRIGLINRTPAGRVA 316 Query: 320 MPIAWQHL 327 A++ L Sbjct: 317 TEKAYRQL 324 >gi|33862429|ref|NP_893989.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9313] gi|44888416|sp|Q7V910|RUVB_PROMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|33640542|emb|CAE20331.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9313] Length = 352 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 161/308 (52%), Positives = 212/308 (68%), Gaps = 1/308 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR LE++ GQ E L + ++AA R +ALDHVL GPPGLGKTT+A V+A ELGV Sbjct: 40 LRPRRLEDYIGQRELKQVLAIAVKAAMGRGDALDHVLLYGPPGLGKTTMAMVLAEELGVK 99 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TS P + + D+ LL NL+ R+VLFIDEIHRL+ + EE+LYPAMED +LDL VG+G Sbjct: 100 CRVTSAPALERPRDIVGLLVNLQPREVLFIDEIHRLTRVAEELLYPAMEDRRLDLTVGKG 159 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+ + L FTL+ ATTR G L++PL+DRFG+ RL FY +EDL+ IV+R A L L Sbjct: 160 STARTRALELPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGLEDLQAIVERAAGLLRL 219 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADAALLRLAIDKMGF 260 +T +A EIA R RGTPRIA RLLRRVRD A V ++ I + D AL +D G Sbjct: 220 QLTAQACQEIARRCRGTPRIANRLLRRVRDVASVCGGESLIDAALVDEALTLHRVDARGL 279 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D D R L ++ + GGGPVG+ET++A L E +E ++EP+++Q GF+QRTPRGR++ Sbjct: 280 DASDRRLLDLLLESHGGGPVGLETLAAALGEDPATLEAVVEPFLLQLGFLQRTPRGRVVT 339 Query: 321 PIAWQHLG 328 +HLG Sbjct: 340 GAGRRHLG 347 >gi|15835923|ref|NP_300447.1| Holliday junction DNA helicase B [Chlamydophila pneumoniae J138] gi|16752648|ref|NP_444913.1| Holliday junction DNA helicase B [Chlamydophila pneumoniae AR39] gi|12644499|sp|Q9Z8F3|RUVB_CHLPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|7189290|gb|AAF38214.1| Holliday junction DNA helicase RuvB [Chlamydophila pneumoniae AR39] gi|8978762|dbj|BAA98598.1| holliday junction helicase [Chlamydophila pneumoniae J138] Length = 337 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 149/310 (48%), Positives = 206/310 (66%), Gaps = 1/310 (0%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D+SL RP+ LEEF GQ L +F+ AA R E H LF GPPGLGKT+LA +VA Sbjct: 15 DVSL-RPKGLEEFYGQHHLKERLDLFLCAALQRGEVPGHCLFFGPPGLGKTSLAHIVAYT 73 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +G SGP + K DL LLT+L++ DV FIDEIHR+ + EE LY AMEDF++D+ Sbjct: 74 VGKGLVLASGPQLIKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDFKVDIT 133 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 + GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF RL++Y +DLK I+ R + Sbjct: 134 IDSGPGARSVRVDLAPFTLVGATTRSGMLSEPLRTRFAFSARLSYYSDQDLKEILVRSSH 193 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 L G+ A EIA RSRGTPR+A LLR VRDFA++ I ++A+ AL L ID Sbjct: 194 LLGIEADSSALLEIAKRSRGTPRLANHLLRWVRDFAQIREGNCINGDVAEKALAMLLIDD 253 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G +++D++ LT I + GGPVGI+T+S + E +ED+ EP++I +GFI++TPRGR Sbjct: 254 WGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGFIKKTPRGR 313 Query: 318 LLMPIAWQHL 327 ++ +A+ HL Sbjct: 314 MVTQLAYDHL 323 >gi|15618305|ref|NP_224590.1| Holliday junction DNA helicase RuvB [Chlamydophila pneumoniae CWL029] gi|33241735|ref|NP_876676.1| Holliday junction DNA helicase B [Chlamydophila pneumoniae TW-183] gi|4376668|gb|AAD18533.1| Holliday Junction Helicase [Chlamydophila pneumoniae CWL029] gi|33236244|gb|AAP98333.1| Holliday junction DNA helicase [Chlamydophila pneumoniae TW-183] Length = 337 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 149/310 (48%), Positives = 206/310 (66%), Gaps = 1/310 (0%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D+SL RP+ LEEF GQ L +F+ AA R E H LF GPPGLGKT+LA +VA Sbjct: 15 DVSL-RPKGLEEFYGQHHLKERLDLFLCAALQRGEVPGHCLFFGPPGLGKTSLAHIVAYT 73 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +G SGP + K DL LLT+L++ DV FIDEIHR+ + EE LY AMEDF++D+ Sbjct: 74 VGKGLVLASGPQLIKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDFKVDIT 133 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 + GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF RL++Y +DLK I+ R + Sbjct: 134 IDSGPGARSVRVDLAPFTLVGATTRSGMLSEPLRARFAFSARLSYYSDQDLKEILVRSSH 193 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 L G+ A EIA RSRGTPR+A LLR VRDFA++ I ++A+ AL L ID Sbjct: 194 LLGIEADSSALLEIAKRSRGTPRLANHLLRWVRDFAQIREGNCINGDVAEKALAMLLIDD 253 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G +++D++ LT I + GGPVGI+T+S + E +ED+ EP++I +GFI++TPRGR Sbjct: 254 WGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGFIKKTPRGR 313 Query: 318 LLMPIAWQHL 327 ++ +A+ HL Sbjct: 314 MVTQLAYDHL 323 >gi|329945620|ref|ZP_08293353.1| Holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 170 str. F0386] gi|328528623|gb|EGF55588.1| Holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 170 str. F0386] Length = 346 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/322 (49%), Positives = 219/322 (68%), Gaps = 3/322 (0%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 + E A + LRP+ LE+FTGQ L V + +A AR DHVL GPPGLGKTTLA Sbjct: 19 ATERAAEAALRPKRLEDFTGQEVVRGQLSVVLRSALARGVTADHVLLSGPPGLGKTTLAM 78 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+ + R TSGP I AGDLAA+L++LE+ DVLFIDEIHRL+ EE+LY AMEDF Sbjct: 79 IIAAEVEGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLARTAEEMLYLAMEDF 138 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 ++D++VG+GP A S+ ++L FT++ ATTR GLL PL+DRFG L++Y +L I+ Sbjct: 139 RVDIVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLDYYGPGELTRIL 198 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAAL 250 R A L G+++ +AA E+A RSRGTPRIA RLLRRV+D+AEV H + + A +AL Sbjct: 199 TRSAGLLGVSLDADAARELASRSRGTPRIANRLLRRVQDWAEV-HGRPGRLDLTAARSAL 257 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +D +G D+LD + L + FGGGPVG+ T++ + E + +E + EPY++++G + Sbjct: 258 DIFEVDALGLDRLDRQVLEALCTRFGGGPVGLTTLAVSVGEEPETVETVAEPYLVREGLV 317 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 RTPRGR P A+ HLG++ P Sbjct: 318 VRTPRGRAATPAAYSHLGLEPP 339 >gi|116330471|ref|YP_800189.1| Holliday junction DNA helicase B [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281771|sp|Q04UI9|RUVB_LEPBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116124160|gb|ABJ75431.1| Holliday junction DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 341 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 149/308 (48%), Positives = 208/308 (67%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP L EF GQ E +NL V+++AAK R ALDHVL GPPGLGKTTLA +V+ ELG Sbjct: 17 SGLRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTLAGIVSNELG 76 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 TS PVI K DLA LLT++ + ++LFIDEIH L +EEILYPAME++ +DL++G Sbjct: 77 TRLTITSAPVITKGADLARLLTSVGENEILFIDEIHTLHKKLEEILYPAMENYMIDLVIG 136 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 EG +A+ V+I L FTL+ ATTR GL++ PL+ RFGI +RL++Y E++K IV R +++ Sbjct: 137 EGVTAQMVQIPLKPFTLVGATTRSGLISEPLKSRFGIQLRLDYYNDEEMKEIVLRSSRIL 196 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 G+ + D+AA EI RSR TPRIA LL+R+RDF+EV ++ + + A ++ ID +G Sbjct: 197 GVKIEDDAALEIGKRSRKTPRIANHLLKRIRDFSEVEGNLSVKKGLCLKAFEKMGIDDLG 256 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D +D + L + + GGPVG++ I+ + E IED E +M++ G I RTP GR+ Sbjct: 257 LDGMDRQILGCMIDRYKGGPVGLKAIAVVVGEEEKTIEDTYESFMVRIGLINRTPAGRVA 316 Query: 320 MPIAWQHL 327 A++ L Sbjct: 317 TEKAYRQL 324 >gi|311894863|dbj|BAJ27271.1| putative Holliday junction ATP-dependent DNA helicase RuvB [Kitasatospora setae KM-6054] Length = 367 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/324 (48%), Positives = 218/324 (67%), Gaps = 1/324 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 LL+ + ED + + LRP+ L+EF GQ L + ++AA+ R A DHVL GPPGL Sbjct: 18 LLTASADGEDQAVEAALRPKLLDEFIGQERVREQLSLVLQAARKRGAAPDHVLLSGPPGL 77 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKTTL+ ++A EL R TSGP I AGDLAA+L++L + +VLF+DEIHR+S EE+L Sbjct: 78 GKTTLSMIIAAELNAPIRITSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEML 137 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 138 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAP 197 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +L+ +V R A L + + A EIA RSRGTPRIA RLLRRVRDFA+V H ++REI Sbjct: 198 AELERVVHRSAGLLDVEIDPAGAAEIAGRSRGTPRIANRLLRRVRDFAQVRHDGLVSREI 257 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL +D G D+LD L + + FGGGPVG+ T++ + E + +E++ EP+++ Sbjct: 258 AARALEVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEEAETVEEVAEPFLV 317 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329 ++G + RTPRGR+ AWQHLG+ Sbjct: 318 REGLLARTPRGRIATAAAWQHLGL 341 >gi|254391316|ref|ZP_05006520.1| holliday junction ATP-dependent DNA helicase ruvB [Streptomyces clavuligerus ATCC 27064] gi|294811583|ref|ZP_06770226.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptomyces clavuligerus ATCC 27064] gi|326440228|ref|ZP_08214962.1| Holliday junction DNA helicase RuvB [Streptomyces clavuligerus ATCC 27064] gi|197705007|gb|EDY50819.1| holliday junction ATP-dependent DNA helicase ruvB [Streptomyces clavuligerus ATCC 27064] gi|294324182|gb|EFG05825.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptomyces clavuligerus ATCC 27064] Length = 365 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 153/312 (49%), Positives = 213/312 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L+EF GQ L + + AA+AR DHVL G PGLGKTTL+ ++A E+ Sbjct: 37 LRPKSLDEFVGQERVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLSMIIAAEMQAP 96 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 97 IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 156 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A ++ + L FTL+ ATTR GLL PL+DRFG + FY+ +L+ +V R A L + Sbjct: 157 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYDPAELQRVVHRSALLLDV 216 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A EIA RSRGTPRIA RLLRRVRD+A+V ITRE+A AAL +D G D Sbjct: 217 EIDTDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKVDGRITREVACAALRVYEVDSRGLD 276 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + + F GGPVG+ T++ + E R+ +E++ EP+++++G + RTPRGR+ P Sbjct: 277 RLDRAVLEALLKLFAGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRIATP 336 Query: 322 IAWQHLGIDIPH 333 AW HLG+ P Sbjct: 337 AAWAHLGLVPPQ 348 >gi|124021906|ref|YP_001016213.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9303] gi|123962192|gb|ABM76948.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9303] Length = 398 Score = 299 bits (766), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 160/308 (51%), Positives = 212/308 (68%), Gaps = 1/308 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LE++ GQ E L + ++AA R +ALDHVL GPPGLGKTT+A V+A ELGV Sbjct: 86 LRPKRLEDYIGQRELKQVLGIAVKAAMGRGDALDHVLLYGPPGLGKTTMAMVLAEELGVK 145 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TS P + + D+ LL NL+ R+VLFIDEIHRL+ + EE+LYPAMED +LDL VG+G Sbjct: 146 CRVTSAPALERPRDIVGLLVNLQPREVLFIDEIHRLTRVAEELLYPAMEDRRLDLTVGKG 205 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+ + L FTL+ ATTR G L++PL+DRFG+ RL FY +EDL+ IV+R A L L Sbjct: 206 STARTRALELPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGLEDLQAIVERAAGLLRL 265 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADAALLRLAIDKMGF 260 +T +A EIA R RGTPRIA RLLRRVRD A V ++ I + D AL +D G Sbjct: 266 QLTAQACQEIARRCRGTPRIANRLLRRVRDVASVCGGESLIDAALVDEALTLHRVDARGL 325 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D D R L ++ + GGGPVG+ET++A L E +E ++EP+++Q GF+QRTPRGR++ Sbjct: 326 DASDRRLLDLLLESHGGGPVGLETLAAALGEDPATLEAVVEPFLLQLGFLQRTPRGRVVT 385 Query: 321 PIAWQHLG 328 +HLG Sbjct: 386 GAGRRHLG 393 >gi|119952828|ref|YP_945037.1| Holliday junction DNA helicase RuvB [Borrelia turicatae 91E135] gi|119861599|gb|AAX17367.1| Holliday junction DNA helicase RuvB [Borrelia turicatae 91E135] Length = 347 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 147/328 (44%), Positives = 213/328 (64%), Gaps = 7/328 (2%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 D+ L RN S+ LRP++L++F Q NL +FI+A++ R EALDHV GP Sbjct: 13 DKNFLYDRNESE-------LRPKSLKDFVRQSHIKENLNIFIKASRDRNEALDHVFLSGP 65 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A E+ + TS P + K D+ +LT L+D+ +LFIDEIHRL ++E Sbjct: 66 PGLGKTTLASIIAFEMNTTIKMTSAPALDKPKDIVGILTTLDDKSILFIDEIHRLKPVIE 125 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMED+++D ++G+GP+AR+V++ + +FTLI ATT+ G + +PL RFGI R + Sbjct: 126 EMLYIAMEDYKIDWIIGQGPAARTVRMPIPKFTLIGATTKPGKVASPLYARFGIVFRFDL 185 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y ++L I+QR + + + + D+AA +A SRGTPR+A RLLRR+RDFA+V IT Sbjct: 186 YNEDELVKIIQRNSIILNVKLEDKAAWLLARSSRGTPRVANRLLRRMRDFAQVGGYGLIT 245 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 I + L L ID G D+ D L + F GGPVG+ET++ + E D++ED EP Sbjct: 246 ESIVSSGLEMLKIDHKGLDEQDRNILRSLILKFKGGPVGVETLAISVGETADSLEDFYEP 305 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330 Y+I +G I+RT RGR A+ HL ++ Sbjct: 306 YLILKGLIERTSRGRKATDFAYFHLNLN 333 >gi|171769890|sp|A2C638|RUVB_PROM3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB Length = 352 Score = 299 bits (765), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 160/308 (51%), Positives = 212/308 (68%), Gaps = 1/308 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LE++ GQ E L + ++AA R +ALDHVL GPPGLGKTT+A V+A ELGV Sbjct: 40 LRPKRLEDYIGQRELKQVLGIAVKAAMGRGDALDHVLLYGPPGLGKTTMAMVLAEELGVK 99 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TS P + + D+ LL NL+ R+VLFIDEIHRL+ + EE+LYPAMED +LDL VG+G Sbjct: 100 CRVTSAPALERPRDIVGLLVNLQPREVLFIDEIHRLTRVAEELLYPAMEDRRLDLTVGKG 159 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+ + L FTL+ ATTR G L++PL+DRFG+ RL FY +EDL+ IV+R A L L Sbjct: 160 STARTRALELPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGLEDLQAIVERAAGLLRL 219 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADAALLRLAIDKMGF 260 +T +A EIA R RGTPRIA RLLRRVRD A V ++ I + D AL +D G Sbjct: 220 QLTAQACQEIARRCRGTPRIANRLLRRVRDVASVCGGESLIDAALVDEALTLHRVDARGL 279 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D D R L ++ + GGGPVG+ET++A L E +E ++EP+++Q GF+QRTPRGR++ Sbjct: 280 DASDRRLLDLLLESHGGGPVGLETLAAALGEDPATLEAVVEPFLLQLGFLQRTPRGRVVT 339 Query: 321 PIAWQHLG 328 +HLG Sbjct: 340 GAGRRHLG 347 >gi|227875447|ref|ZP_03993588.1| crossover junction endoribonuclease subunit B [Mobiluncus mulieris ATCC 35243] gi|269977301|ref|ZP_06184274.1| holliday junction DNA helicase RuvB [Mobiluncus mulieris 28-1] gi|227844001|gb|EEJ54169.1| crossover junction endoribonuclease subunit B [Mobiluncus mulieris ATCC 35243] gi|269934604|gb|EEZ91165.1| holliday junction DNA helicase RuvB [Mobiluncus mulieris 28-1] Length = 353 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 215/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL +F GQ + L + + AAK R +A+DHVL GPPGLGKTTLA ++A E+ + Sbjct: 30 LRPKTLMDFVGQNTVKTQLNLVLRAAKERGDAVDHVLLAGPPGLGKTTLAMIIAAEMNSS 89 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I+ AGDLAA+L++L++ DVLFIDEIHRL+ EE+LY AMEDF++D++VG+G Sbjct: 90 LRLTSGPAISHAGDLAAILSSLQEGDVLFIDEIHRLARPAEEMLYLAMEDFRVDVVVGKG 149 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ ++L +FTL+ ATTR GLL PL+DRFG + YE EDL IV+R A L G Sbjct: 150 PGATSIPLSLPQFTLVGATTRAGLLPAPLRDRFGFTAHMEPYEAEDLSLIVKRSAALLGA 209 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA EIA RSRGTPR+A RLLRRV DFA V + E A A L +D+MG D Sbjct: 210 CITGEAAHEIAKRSRGTPRVANRLLRRVIDFALVHGNEECDLEAAQATLKLFEVDEMGLD 269 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L I F GGPVG T++ + E ++ +E+++EP++++ G + RT RGR++ Sbjct: 270 RLDRDVLHAIVERFQGGPVGAGTLAVSVGEEKETVEEVVEPFLVRVGLLARTQRGRVITA 329 Query: 322 IAWQHLGIDIP 332 + HLG+ +P Sbjct: 330 KGYTHLGLPVP 340 >gi|330444415|ref|YP_004377401.1| Holliday junction DNA helicase RuvB [Chlamydophila pecorum E58] gi|328807525|gb|AEB41698.1| Holliday junction DNA helicase RuvB [Chlamydophila pecorum E58] Length = 330 Score = 298 bits (764), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 146/306 (47%), Positives = 204/306 (66%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+EF GQ L +F++AA R E H LF GPPGLGKT+LA +VA +G Sbjct: 18 LRPKGLQEFYGQAHVKERLDLFLQAALQRQEVPGHCLFFGPPGLGKTSLAHIVAATVGKG 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + SGP + K DL LLT+L++ DV FIDEIHRL EE LYPA+EDF++D+ + G Sbjct: 78 LVTASGPQLVKPSDLIGLLTSLQEGDVFFIDEIHRLGKAAEEYLYPAIEDFKIDITIDSG 137 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARSV+I+L+ FTL+ ATTR G+L+ PL+ RF RL++Y +DL I+ R AKL G+ Sbjct: 138 PGARSVRIDLAPFTLVGATTRSGMLSEPLRTRFAFSARLSYYSDQDLIDILTRSAKLLGI 197 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A EIA RSRGTPR+A LL+ VRDFA++ I ++A+ AL L ID G + Sbjct: 198 QAEPAALLEIARRSRGTPRLANHLLKWVRDFAQMREGNCINGDVAEKALAMLLIDDWGLN 257 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D++ LT + + GGPVGI+T+S + E +ED+ EP++I +G I++TPRGR++ Sbjct: 258 EVDVKLLTTMIEYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGLIKKTPRGRMVTQ 317 Query: 322 IAWQHL 327 +A+ HL Sbjct: 318 LAYDHL 323 >gi|124516218|gb|EAY57726.1| Holliday junction DNA helicase (RuvB) [Leptospirillum rubarum] Length = 332 Score = 298 bits (764), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 153/323 (47%), Positives = 213/323 (65%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 D + L +E D +LLRPRT + + GQ + +LKV I+AA R + LDH+L GP Sbjct: 5 DADLLTPEEFPEEIPDANLLRPRTFDHYVGQKDVIDSLKVAIQAALLREDTLDHILLHGP 64 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA +VAR +GV+F ++SGP + K GDL +LT L +LFIDEIHRL VE Sbjct: 65 PGLGKTTLAALVARAMGVSFLASSGPALEKGGDLVGILTRLAPGTLLFIDEIHRLPRAVE 124 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 EILY AMEDF +D++ G +AR+ + + FTL+ ATTR GLL+ PL+DRFGI L+F Sbjct: 125 EILYSAMEDFAIDVVFDRGAAARTFRHRIPPFTLVGATTRAGLLSAPLRDRFGIQRDLDF 184 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y+ +L I++R A + G+ + E + EI RSRGTPRIA RLL+RVRDF++V I+ Sbjct: 185 YQPPELARILERSAGILGIGIDPEGSLEIGRRSRGTPRIANRLLKRVRDFSQVHGHPVIS 244 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 R +A AL ID G +++D R++ I + GGPVGIE ++A L D + D++EP Sbjct: 245 RAVAHQALRMEGIDDRGLNRIDRRFIETIRVVYNGGPVGIEAMAATLQMDPDTLIDVVEP 304 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQ 325 Y++++G++ RTP GR L W+ Sbjct: 305 YLLKEGYLARTPAGRRLTASGWE 327 >gi|306818759|ref|ZP_07452481.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus mulieris ATCC 35239] gi|307700682|ref|ZP_07637707.1| Holliday junction DNA helicase RuvB [Mobiluncus mulieris FB024-16] gi|304648445|gb|EFM45748.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus mulieris ATCC 35239] gi|307613677|gb|EFN92921.1| Holliday junction DNA helicase RuvB [Mobiluncus mulieris FB024-16] Length = 353 Score = 298 bits (763), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 215/311 (69%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL +F GQ + L + + AAK R +A+DHVL GPPGLGKTTLA ++A E+ + Sbjct: 30 LRPKTLMDFVGQNTVKTQLNLVLRAAKERGDAVDHVLLAGPPGLGKTTLAMIIAAEMNSS 89 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I+ AGDLAA+L++L++ DVLFIDEIHRL+ EE+LY AMEDF++D++VG+G Sbjct: 90 LRLTSGPAISHAGDLAAILSSLQEGDVLFIDEIHRLARPAEEMLYLAMEDFRVDVVVGKG 149 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ ++L +FTL+ ATTR GLL PL+DRFG + YE EDL IV+R A L G Sbjct: 150 PGATSIPLSLPQFTLVGATTRAGLLPAPLRDRFGFTAHMEPYEAEDLSLIVKRSAALLGA 209 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +T EAA EIA RSRGTPR+A RLLRRV DFA V + E A A L +D+MG D Sbjct: 210 RITGEAAHEIAKRSRGTPRVANRLLRRVIDFALVHGNEECDLEAAQATLKLFEVDEMGLD 269 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L I F GGPVG T++ + E ++ +E+++EP++++ G + RT RGR++ Sbjct: 270 RLDRDVLHAIVERFQGGPVGAGTLAVSVGEEKETVEEVVEPFLVRVGLLARTQRGRVITA 329 Query: 322 IAWQHLGIDIP 332 + HLG+ +P Sbjct: 330 KGYTHLGLPVP 340 >gi|168700086|ref|ZP_02732363.1| Holliday junction DNA helicase B [Gemmata obscuriglobus UQM 2246] Length = 347 Score = 298 bits (763), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 150/328 (45%), Positives = 212/328 (64%), Gaps = 1/328 (0%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M RE +++ E + LRP+ L+E GQ + L++ + A+K E L H+LF Sbjct: 1 MAREKVITSGPGDEQKKHDAALRPKLLKEVIGQRKVAERLEIAVRASKKLNEPLGHILFD 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTT A V+ ELG + + TSGP +AK DL LTNLE+ VLFIDEIHR+ + Sbjct: 61 GPPGLGKTTFATVLPNELGTSLQMTSGPALAKPADLLPFLTNLEEGSVLFIDEIHRMPRV 120 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEE +YPAMEDF++D+++GEG SAR++ + L RFTLI ATTR G+L+ P++DRF + L Sbjct: 121 VEEFIYPAMEDFRIDIVLGEGMSARTISMTLKRFTLIGATTRSGMLSGPMRDRFKMHEHL 180 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY +++L TI A +T +A+ E+A RSRGTPR+A L R FA H T Sbjct: 181 EFYSVDELATIATVNAAKLNTPITSQASLELARRSRGTPRVANSRLHWTRSFAAAQHDGT 240 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT E+A AAL +D+ G D+ D +YL + +GGGP G+E ++A ++ D + D I Sbjct: 241 ITEEVARAALDMAEVDRDGLDKNDRKYLETLIDLYGGGPTGVEALAATINLASDTLSDEI 300 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 EPY++++ +I R+PRGR+ MP A+ LG Sbjct: 301 EPYLLREQYITRSPRGRVAMPRAYSALG 328 >gi|163840741|ref|YP_001625146.1| Holliday junction DNA helicase RuvB [Renibacterium salmoninarum ATCC 33209] gi|162954217|gb|ABY23732.1| holliday junction DNA helicase [Renibacterium salmoninarum ATCC 33209] Length = 341 Score = 298 bits (762), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 152/331 (45%), Positives = 215/331 (64%), Gaps = 1/331 (0%) Query: 3 DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 D L+S + E+ I + LRP+ L++F GQ L + +EA++ R + DHVL G Sbjct: 7 DSRALVSSDGEPEERMIEAALRPKNLDDFVGQKRVRGQLSLVLEASRIRGRSADHVLLSG 66 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTLA ++A E+ R +SGP I AGDLAA+L++L + +VLF+DEIHR+S Sbjct: 67 PPGLGKTTLAMIIAAEMNAPLRISSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPA 126 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF++D++VG+G A ++ + + FTL+ ATTR GLL PL+DRFG L Sbjct: 127 EEMLYMAMEDFRVDIVVGKGAGATAIPLEIPPFTLVGATTRAGLLPGPLRDRFGFTGHLE 186 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY + +L+ +++R A L L ++ EIA RSRGTPRIA RLLRRVRD+A V + I Sbjct: 187 FYSVPELELVLRRSAGLLDLKLSSAGFSEIAGRSRGTPRIANRLLRRVRDWALVNGVQQI 246 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 A AAL +D G D+LD L + F GGPVG+ T++ + E + +E + E Sbjct: 247 DARTASAALEMYEVDARGLDRLDRAVLQALIGKFNGGPVGLSTLAIAVGEEMETVETVAE 306 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 P+++++G + RTPRGR+ MP AW HLG+ P Sbjct: 307 PFLVREGLLGRTPRGRIAMPAAWDHLGVPRP 337 >gi|21220018|ref|NP_625797.1| Holliday junction DNA helicase RuvB [Streptomyces coelicolor A3(2)] gi|256788882|ref|ZP_05527313.1| Holliday junction DNA helicase RuvB [Streptomyces lividans TK24] gi|289772770|ref|ZP_06532148.1| Holliday junction DNA helicase RuvB [Streptomyces lividans TK24] gi|20140294|sp|Q9L291|RUVB_STRCO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|6822214|emb|CAB70920.1| holliday junction DNA helicase [Streptomyces coelicolor A3(2)] gi|289702969|gb|EFD70398.1| Holliday junction DNA helicase RuvB [Streptomyces lividans TK24] Length = 357 Score = 298 bits (762), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 157/329 (47%), Positives = 218/329 (66%), Gaps = 1/329 (0%) Query: 5 EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E L+ ED + + LRP+ L EF GQ + L + + AA+AR DHVL G P Sbjct: 14 ERLVGAAADGEDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 73 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTL+ ++A E+ R TSGP I AGDLAA+L++L++ +VLF+DEIHR+S EE Sbjct: 74 GLGKTTLSMIIAAEMEAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 133 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LY AMEDF++D++VG+GP A ++ + L FTL+ ATTR GLL PL+DRFG + FY Sbjct: 134 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 193 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 +L+ ++ R A L + + A EIA RSRGTPRIA RLLRRVRD+A+V IT+ Sbjct: 194 GPAELERVIHRSAGLLDVEIDPTGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGLITQ 253 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 EIA AAL +D G D+LD L + + FGGGPVG+ T++ + E R+ +E++ EP+ Sbjct: 254 EIAAAALAVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 313 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++++G + RTPRGR+ P AW HLG+ P Sbjct: 314 LVREGLLARTPRGRVATPAAWAHLGLTPP 342 >gi|269303267|gb|ACZ33367.1| holliday junction DNA helicase RuvB [Chlamydophila pneumoniae LPCoLN] Length = 337 Score = 298 bits (762), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 148/310 (47%), Positives = 205/310 (66%), Gaps = 1/310 (0%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D+SL RP+ LEEF GQ L +F+ AA R E H LF GPPGLGKT+LA +VA Sbjct: 15 DVSL-RPKGLEEFYGQHHLKERLDLFLCAALQRGEVPGHCLFFGPPGLGKTSLAHIVAYT 73 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +G SGP + K DL LLT+L++ DV FIDEIHR+ + EE LY AMEDF++D+ Sbjct: 74 VGKGLVLASGPQLIKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDFKVDIT 133 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 + GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF RL++Y +DLK I+ R + Sbjct: 134 IDSGPGARSVRVDLAPFTLVGATTRSGMLSEPLRARFAFSARLSYYSDQDLKEILVRSSH 193 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 L G+ A EIA RSRGTPR+A LLR VRDFA++ I ++A+ AL L ID Sbjct: 194 LLGIEADSSALLEIAKRSRGTPRLANHLLRWVRDFAQIREGNCINGDVAEKALAMLLIDD 253 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G +++D++ LT I + GGPVGI+T+S + E +ED+ EP++I +G I++TPRGR Sbjct: 254 WGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGLIKKTPRGR 313 Query: 318 LLMPIAWQHL 327 ++ +A+ HL Sbjct: 314 MVTQLAYDHL 323 >gi|28493236|ref|NP_787397.1| Holliday junction DNA helicase RuvB [Tropheryma whipplei str. Twist] gi|44888464|sp|Q83HN0|RUVB_TROW8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|44888470|sp|Q83MZ8|RUVB_TROWT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|28476277|gb|AAO44366.1| holliday junction binding protein RuvB [Tropheryma whipplei str. Twist] Length = 345 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 165/330 (50%), Positives = 222/330 (67%), Gaps = 2/330 (0%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 + +R LL S E LRP+ L EF GQ + + L + I+AAK + DH L Sbjct: 6 LQNRNNLLDVT-SDEKQTEGALRPKLLAEFVGQNKVKNQLALLIQAAKIQGRVTDHALLA 64 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA +VA E GV+ R +SGP I AGDLAALL++L ++LFIDEIHR+S + Sbjct: 65 GPPGLGKTTLAMIVAAECGVSIRMSSGPAIQHAGDLAALLSSLLPGELLFIDEIHRMSRV 124 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 EE+LY AMEDF++D+MVG+GP A SV + LS FTL+ ATTR GLL PL+DRFG RL Sbjct: 125 AEEMLYLAMEDFRIDIMVGKGPGATSVPLELSPFTLVGATTRAGLLPGPLRDRFGFTARL 184 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +FY E+L ++ R A+L + D+A IA+RSRGTPR+A RLLRR RD+ V+++ Sbjct: 185 DFYSPEELLQVLIRSARLMEIQYYDDALESIAVRSRGTPRVANRLLRRTRDYLLVSNSSE 244 Query: 241 I-TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I ++EIA A+ +D +G D+LD L I F GGPVGI+T+SA L E + IE+ Sbjct: 245 ILSKEIALKAMDVYEVDSLGLDRLDRAVLHAIFDRFSGGPVGIKTLSAYLGEEAETIENS 304 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 IEP++++QG + RTPRGR + +A +H+G Sbjct: 305 IEPFLVRQGLLVRTPRGRQITDLARKHMGF 334 >gi|87308972|ref|ZP_01091110.1| holliday junction DNA helicase RuvB [Blastopirellula marina DSM 3645] gi|87288315|gb|EAQ80211.1| holliday junction DNA helicase RuvB [Blastopirellula marina DSM 3645] Length = 336 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 150/326 (46%), Positives = 211/326 (64%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M RE LL + D LRP+++ + GQ E L++ ++AA R E L H+LF G Sbjct: 1 MAREALLQQGDGHGPEDERSLRPQSMADMVGQREVAKRLQIVVDAAMKRDEPLGHILFDG 60 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTT A + ++LGVNF+ TSGP I DL LTN ++R +LFIDEIHR+ V Sbjct: 61 PPGLGKTTFATCIPKDLGVNFQLTSGPAIQAPKDLVPYLTNADERSILFIDEIHRIPKAV 120 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE LY AMEDF++D+++GEG +AR++ + + FTLI ATTR G+L+ PL+DRF + L+ Sbjct: 121 EEYLYTAMEDFRIDIVLGEGTNARTINLQIKPFTLIGATTRSGMLSAPLRDRFVLREHLD 180 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY ++L IV+R +K G+ + D+AA EI+ RSR TPR+A LR VRDFA + Sbjct: 181 FYSDDELAEIVRRNSKKLGVTIDDDAALEISKRSRSTPRVANNRLRWVRDFATSRSDGHV 240 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T E+A AA+ AID +G D+ D YL+ + R F GGP GIE I+ ++ D + D +E Sbjct: 241 TLELARAAMEMQAIDDLGLDKQDRNYLSTLVRVFAGGPAGIEAIAHTMNAATDTLADEVE 300 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327 P++++ + RTPRGR++ P A HL Sbjct: 301 PFLLRTELVVRTPRGRVVTPKAMGHL 326 >gi|28572650|ref|NP_789430.1| Holliday junction DNA helicase B [Tropheryma whipplei TW08/27] gi|28410782|emb|CAD67168.1| holliday junction DNA helicase RuvB [Tropheryma whipplei TW08/27] Length = 331 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 162/319 (50%), Positives = 217/319 (68%), Gaps = 1/319 (0%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 S E LRP+ L EF GQ + + L + I+AAK + DH L GPPGLGKTTLA Sbjct: 2 TSDEKQTEGALRPKLLAEFVGQNKVKNQLALLIQAAKIQGRVTDHALLAGPPGLGKTTLA 61 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA E GV+ R +SGP I AGDLAALL++L ++LFIDEIHR+S + EE+LY AMED Sbjct: 62 MIVAAECGVSIRMSSGPAIQHAGDLAALLSSLLPGELLFIDEIHRMSRVAEEMLYLAMED 121 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D+MVG+GP A SV + LS FTL+ ATTR GLL PL+DRFG RL+FY E+L + Sbjct: 122 FRIDIMVGKGPGATSVPLELSPFTLVGATTRAGLLPGPLRDRFGFTARLDFYSPEELLQV 181 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI-TREIADAAL 250 + R A+L + D+A IA+RSRGTPR+A RLLRR RD+ V+++ I ++EIA A+ Sbjct: 182 LIRSARLMEIQYYDDALESIAVRSRGTPRVANRLLRRTRDYLLVSNSSEILSKEIALKAM 241 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +D +G D+LD L I F GGPVGI+T+SA L E + IE+ IEP++++QG + Sbjct: 242 DVYEVDSLGLDRLDRAVLHAIFDRFSGGPVGIKTLSAYLGEEAETIENSIEPFLVRQGLL 301 Query: 311 QRTPRGRLLMPIAWQHLGI 329 RTPRGR + +A +H+G Sbjct: 302 VRTPRGRQITDLARKHMGF 320 >gi|296129642|ref|YP_003636892.1| Holliday junction DNA helicase RuvB [Cellulomonas flavigena DSM 20109] gi|296021457|gb|ADG74693.1| Holliday junction DNA helicase RuvB [Cellulomonas flavigena DSM 20109] Length = 359 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 158/318 (49%), Positives = 218/318 (68%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A + LRPR LEEF GQ L + ++AA R A DHVL GPPGLGKTTLA ++ Sbjct: 34 ERAAEAALRPRRLEEFVGQRVVRDQLSLVLQAALGRGRAPDHVLLSGPPGLGKTTLAMII 93 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A ELG + R TSGP I AGDLAA+L++LE+ +VLFIDEIHRL+ EE+LY AMEDF++ Sbjct: 94 AAELGASLRVTSGPAIQHAGDLAAVLSSLEEGEVLFIDEIHRLARPAEELLYVAMEDFRV 153 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+G A ++ ++L FT++ ATTR GLL PL+DRFG L+FY ++L+ ++ R Sbjct: 154 DVVVGKGAGASAIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLDFYADDELERVLVR 213 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A L + + AA EIA RSRGTPRIA RLLRRVRD+A+V T++ A +AL Sbjct: 214 SAGLLDVPLEAAAAAEIASRSRGTPRIANRLLRRVRDWAQVRGDGTLSLAAARSALDVYE 273 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D+LD L + R FGGGPVG+ T++ + E + +E + EP+++++G + RT Sbjct: 274 VDVRGLDRLDRAVLDALCRRFGGGPVGLTTLAVAVGEEPETVETVAEPFLVREGLVGRTA 333 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ +P AW+HLG+ +P Sbjct: 334 RGRVALPPAWEHLGLPVP 351 >gi|309811444|ref|ZP_07705230.1| Holliday junction DNA helicase RuvB [Dermacoccus sp. Ellin185] gi|308434591|gb|EFP58437.1| Holliday junction DNA helicase RuvB [Dermacoccus sp. Ellin185] Length = 364 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 160/327 (48%), Positives = 218/327 (66%), Gaps = 1/327 (0%) Query: 7 LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L+ N ++++ + + LRP+ L +F GQ L + IEAA+ RA DH+LF GPPGL Sbjct: 17 LVDPNGTEDEQQLEAALRPKKLADFPGQPRVREQLSLVIEAARRRATPPDHILFSGPPGL 76 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 GKT+LA +VA EL R TSGP I AGDLAA+L++L + +VLF+DEIHR++ EE+L Sbjct: 77 GKTSLAMIVASELEAPIRITSGPAIQHAGDLAAILSSLNEGEVLFLDEIHRMARPAEEML 136 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 Y AMEDF++D++VG+GP A ++ + L RFT++ ATTR GLL PL+DRFG L++Y+ Sbjct: 137 YLAMEDFRVDVIVGKGPGATAIPLELPRFTVVGATTRAGLLPAPLRDRFGFTGHLDYYDA 196 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 DL I+ R A L G+ T E EIA RSRGTPRIA RLLRRVRD+A+V + Sbjct: 197 ADLADILARNADLLGVPATREGITEIAGRSRGTPRIANRLLRRVRDYAQVHGRHVVDLTS 256 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AAL +D G D+LD L + R FGGGPVG+ T++ + E D +E + EPY++ Sbjct: 257 ARAALELFDVDDDGLDRLDRAVLEALCRRFGGGPVGLSTLAVAVGEEPDTVETVAEPYLV 316 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++G++ RTPRGR P AW HLG+ P Sbjct: 317 REGYMIRTPRGRAASPRAWTHLGLRPP 343 >gi|294055485|ref|YP_003549143.1| Holliday junction DNA helicase RuvB [Coraliomargarita akajimensis DSM 45221] gi|293614818|gb|ADE54973.1| Holliday junction DNA helicase RuvB [Coraliomargarita akajimensis DSM 45221] Length = 344 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 147/311 (47%), Positives = 213/311 (68%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S+LRP + +F GQ + LKV + AA+ R E L+H+L GPPGLGKTTL+ ++ E+G Sbjct: 25 SILRPLSFSDFAGQAKTLERLKVMVGAARDRGEPLNHILLSGPPGLGKTTLSLILGNEMG 84 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 N TSGPVI K DLA LLTNL + D+LFIDEIHR+ VEE LY AMEDF++D+M+ Sbjct: 85 KNVSITSGPVIDKPADLAGLLTNLSEGDILFIDEIHRIPKTVEEYLYSAMEDFRIDIMID 144 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 +GP+ARSV++NL RFTL+ ATTR+GLLT PL+ RF + RL++Y+ L+ I++R + Sbjct: 145 QGPNARSVRLNLPRFTLLGATTRLGLLTAPLRSRFTLQTRLSYYDHATLQGIIERTCDIL 204 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 + + A EIA R+RGTPRIA L+ RD+A+ + IT+ A AAL L ID G Sbjct: 205 NVEFEHDGAAEIARRARGTPRIANNLVNFCRDYAQQRGSGIITQASAAAALELLEIDTRG 264 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D++D + + ++A ++ GGPVG+ T++ + E +E++ EPY+IQ+G++QRT +GR+L Sbjct: 265 LDEMDKQVMRVMAESYKGGPVGLGTVAIAVGEEAHTLEEVHEPYLIQEGYLQRTAQGRVL 324 Query: 320 MPIAWQHLGID 330 W +G++ Sbjct: 325 TEKGWHVIGLE 335 >gi|119961075|ref|YP_948036.1| Holliday junction DNA helicase RuvB [Arthrobacter aurescens TC1] gi|171704630|sp|A1R724|RUVB_ARTAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|119947934|gb|ABM06845.1| Holliday junction DNA helicase RuvB [Arthrobacter aurescens TC1] Length = 358 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 149/311 (47%), Positives = 204/311 (65%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L +F GQ L + +EA+K R + DHVL GPPGLGKTTLA ++A E+ Sbjct: 22 LRPKNLHDFVGQHRVRKQLALVLEASKMRGRSADHVLMSGPPGLGKTTLAMIIAAEMNAP 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R +SGP I AGDLAA+L++L + +VLF+DEIHR+S EE+LY AMEDF++D++VG+G Sbjct: 82 LRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A ++ + L FTL+ ATTR GLL PL+DRFG L FY + +L+ +++R A L L Sbjct: 142 AGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVAELELVLRRSAGLLDL 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V EIA RSRGTPRIA RLLRRVRD+A V + I A AAL +D+ G D Sbjct: 202 KVNSAGFTEIAGRSRGTPRIANRLLRRVRDWALVHGIEQIDARSASAALDMYEVDERGLD 261 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L + F GGPVG+ T++ + E + +E + EP+++++G + RTPRGR+ M Sbjct: 262 RLDRSVLEALITKFNGGPVGLSTLAIAVGEEPETVETVAEPFLVREGLLGRTPRGRIAMA 321 Query: 322 IAWQHLGIDIP 332 AW HLG +P Sbjct: 322 SAWTHLGYAVP 332 >gi|29840168|ref|NP_829274.1| Holliday junction DNA helicase B [Chlamydophila caviae GPIC] gi|33301623|sp|Q823K4|RUVB_CHLCV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|29834516|gb|AAP05152.1| Holliday junction DNA helicase RuvB [Chlamydophila caviae GPIC] Length = 337 Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 145/310 (46%), Positives = 205/310 (66%), Gaps = 1/310 (0%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 DISL RP+ L EF GQ + L++F+ AA R E H LF GPPGLGKT+LA +VA Sbjct: 15 DISL-RPKGLREFCGQKQLTERLELFLHAAVQRGEVPGHCLFFGPPGLGKTSLAHIVAHT 73 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +G SGP + K DL LLT+L++ DV FIDEIHR+ + EE LY AMED+++D+ Sbjct: 74 VGKGLVVASGPQLVKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDYKIDIT 133 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 + GP ARSV ++L+ F+L+ ATTR G+L+ PL+ RF R+++Y EDL TI++R + Sbjct: 134 IDSGPGARSVSVDLAPFSLVGATTRSGMLSEPLRARFSFTGRMSYYSDEDLTTILKRSSN 193 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 L G+ A EIA RSRGTPR+A LLR VRDFA++ I ++A+ AL L ID Sbjct: 194 LLGIDADTAALYEIARRSRGTPRLANNLLRWVRDFAQMREGNCINSDVAEKALAMLLIDD 253 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G +++D++ LT I + GGPVGI+T+S + E +ED+ EP++I +G +++T RGR Sbjct: 254 WGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGLLKKTSRGR 313 Query: 318 LLMPIAWQHL 327 ++ IA+ HL Sbjct: 314 MVTQIAYNHL 323 >gi|147919261|ref|YP_687003.1| Holliday junction DNA helicase RuvB [uncultured methanogenic archaeon RC-I] gi|110622399|emb|CAJ37677.1| holliday junction resolvasome, helicase subunit [uncultured methanogenic archaeon RC-I] Length = 337 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 143/247 (57%), Positives = 184/247 (74%) Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 F S GP I +AGDLAA+LTNL++ DVLFIDEIHRLS +VEEILY AMEDF++D+++G+ Sbjct: 85 TFASPQGPAIERAGDLAAILTNLKEGDVLFIDEIHRLSHVVEEILYSAMEDFEIDIIIGK 144 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 GPSARS+++ L RFTL+ ATTR G+L+ PL+DRFG+ +R FY EDLKTI+ R AK+ Sbjct: 145 GPSARSIRLELPRFTLVGATTRAGMLSPPLRDRFGMSLRFEFYTPEDLKTIIDRSAKILN 204 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + +T + + EIA RSRGTPRIA RLLRRVRDFA V I IA +L +L +D +G Sbjct: 205 MEITPDGSMEIAARSRGTPRIANRLLRRVRDFAHVEKKTVIDTGIARKSLDKLDVDFLGL 264 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D +D R L I +++GGGPVG ET++ +SE D IED+ EPY+IQ GFI RTPRGR+ Sbjct: 265 DAMDRRILKTIIKDYGGGPVGAETLAVSVSEETDTIEDVYEPYLIQIGFINRTPRGRMAT 324 Query: 321 PIAWQHL 327 P A +HL Sbjct: 325 PAAVEHL 331 >gi|227496220|ref|ZP_03926519.1| crossover junction endoribonuclease subunit B [Actinomyces urogenitalis DSM 15434] gi|226834251|gb|EEH66634.1| crossover junction endoribonuclease subunit B [Actinomyces urogenitalis DSM 15434] Length = 347 Score = 295 bits (756), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 155/320 (48%), Positives = 211/320 (65%), Gaps = 1/320 (0%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A + LRP+ LE+F GQ L V + AA +R DHVL GPPGLGKTTLA ++ Sbjct: 22 ERAAEAALRPKRLEDFVGQEVVRGQLSVVLRAALSRGTTPDHVLLSGPPGLGKTTLAMII 81 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+ + R TSGP I AGDLAA+L++LE+ DVLFIDEIHRL+ EE+LY AMED+++ Sbjct: 82 AAEVEGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLARTAEEMLYLAMEDYRV 141 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+GP A S+ ++L FT++ ATTR GLL PL+DRFG L +Y +L I+ R Sbjct: 142 DVVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLEYYGPAELSRILAR 201 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRL 253 A L G+ + +A E+A RSRGTPRIA RLLRRV+D+AEV + E A AAL Sbjct: 202 SAGLLGVQLEAQAGAELARRSRGTPRIANRLLRRVQDWAEVHGTPGYLDLEAARAALEVF 261 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 +D +G D+LD L + FGGGPVG+ T++ + E + +E + EPY++++G + RT Sbjct: 262 EVDALGLDRLDRAVLEALCTRFGGGPVGLTTLAVSVGEEPETVETVAEPYLVREGLVVRT 321 Query: 314 PRGRLLMPIAWQHLGIDIPH 333 PRGR A++HLG+ P Sbjct: 322 PRGRSATAAAYEHLGLQPPE 341 >gi|260434540|ref|ZP_05788510.1| holliday junction DNA helicase RuvB [Synechococcus sp. WH 8109] gi|260412414|gb|EEX05710.1| holliday junction DNA helicase RuvB [Synechococcus sp. WH 8109] Length = 348 Score = 295 bits (756), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 156/308 (50%), Positives = 206/308 (66%), Gaps = 2/308 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+++ GQ E L + +EAA R +ALDHVL GPPGLGKTT+A V+A E+GV Sbjct: 37 LRPQFLDDYIGQSELKQVLGIAVEAALGRGDALDHVLLYGPPGLGKTTMAMVLAEEMGVQ 96 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P + + D+ LL NL+ RD+LFIDEIHRLS + EE+LYPAMED +LDL VG+G Sbjct: 97 CKVTSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLSRVAEELLYPAMEDRRLDLTVGKG 156 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +ARS ++L FTL+ ATTR G L++PL+DRFG+ RL FY DL+ IV R A L G+ Sbjct: 157 STARSRSLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGQGDLEAIVDRTAGLIGV 216 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--AHAKTITREIADAALLRLAIDKMG 259 A+T EA IA RGTPRIA RLLRRVRD A V I + + AL +D G Sbjct: 217 ALTPEARSSIAASCRGTPRIANRLLRRVRDVASVRGGGGGVIDQALVGDALSLHRVDHRG 276 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D D R L ++ + GGGPVG+ET++A L + +E ++EP+++QQG + RTPRGR++ Sbjct: 277 LDASDRRLLQLLIDHHGGGPVGLETLAAALGDDPVTLETVVEPFLLQQGLLMRTPRGRMV 336 Query: 320 MPIAWQHL 327 A HL Sbjct: 337 TDAARSHL 344 >gi|149178845|ref|ZP_01857425.1| Holliday junction DNA helicase B [Planctomyces maris DSM 8797] gi|148842320|gb|EDL56703.1| Holliday junction DNA helicase B [Planctomyces maris DSM 8797] Length = 393 Score = 295 bits (755), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 150/311 (48%), Positives = 203/311 (65%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E GQ L+VF++A + R E L H+L GPPGLGKTTLA V+ RELG Sbjct: 76 LRPQRLSEVVGQRAVVERLEVFLDATRKRNEPLGHLLLDGPPGLGKTTLASVLPRELGTE 135 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP ++ DL LTN LFIDEIHR+ VEE +YPAMEDF++D+ +GEG Sbjct: 136 LQITSGPSLSAPKDLLPFLTNASHGSFLFIDEIHRMPATVEEFIYPAMEDFRVDITLGEG 195 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+V + L +FT+I ATTR G+LT PL+DRF L+FYE ++L IV+R A+ Sbjct: 196 LNARTVNMKLQKFTVIGATTRSGMLTAPLRDRFVRREHLDFYEDQELIEIVRRNARKLKT 255 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +TD+AA EIA RSRGTPR A LLR RDFA IT E+ A L ID++G + Sbjct: 256 PITDDAAFEIARRSRGTPRKANNLLRWARDFATSKADGKITNEVVKRAFEMLEIDQLGLE 315 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D RYL + + F GGP G++ + L+ P D +ED +EP++++ GFIQR+PRGR++ Sbjct: 316 RQDRRYLEALVKTFSGGPAGVQALGHTLNIPADTLEDEVEPFLLRCGFIQRSPRGRIVTM 375 Query: 322 IAWQHLGIDIP 332 A +HL ++ P Sbjct: 376 AAMEHLNLNPP 386 >gi|329942753|ref|ZP_08291532.1| holliday junction DNA helicase RuvB [Chlamydophila psittaci Cal10] gi|332287350|ref|YP_004422251.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC] gi|313847933|emb|CBY16928.1| holliday junction DNA helicase [Chlamydophila psittaci RD1] gi|325507310|gb|ADZ18948.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC] gi|328815013|gb|EGF85002.1| holliday junction DNA helicase RuvB [Chlamydophila psittaci Cal10] gi|328914594|gb|AEB55427.1| Holliday junction DNA helicase RuvB [Chlamydophila psittaci 6BC] Length = 337 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 144/310 (46%), Positives = 207/310 (66%), Gaps = 1/310 (0%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D+SL RP+ L+EF GQ + L++F+ AA R E H LF GPPGLGKT+LA +VA Sbjct: 15 DVSL-RPKGLKEFCGQAQLTERLELFLNAAIQRGEVPGHCLFFGPPGLGKTSLAHIVANT 73 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +G SGP + K DL LLT+L++ DV FIDEIHR+ + EE LY AMED+++D+ Sbjct: 74 VGKGLIVASGPQLVKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDYKIDIT 133 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 + GP ARSV I+L+ F+L+ ATTR G+L+ PL+ RF R+++Y EDL TI++R + Sbjct: 134 IDSGPGARSVSIDLAPFSLVGATTRSGMLSEPLRARFSFTGRVSYYSDEDLATILRRSSN 193 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 L G+ A EIA RSRGTPR+A LLR VRDFA++ I ++A+ AL L ID+ Sbjct: 194 LLGIDADPSALYEIARRSRGTPRLANNLLRWVRDFAQMREGNCINSDVAEKALAMLLIDE 253 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G +++D++ LT I + GGPVGI+T+S + E +ED+ EP++I +G +++T RGR Sbjct: 254 WGLNEIDIKLLTTIMDYYQGGPVGIKTLSVAVGEDIRTLEDVYEPFLILKGLLKKTSRGR 313 Query: 318 LLMPIAWQHL 327 ++ +A+ HL Sbjct: 314 MVTQLAYNHL 323 >gi|62185021|ref|YP_219806.1| Holliday junction DNA helicase B [Chlamydophila abortus S26/3] gi|81312811|sp|Q5L686|RUVB_CHLAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|62148088|emb|CAH63845.1| holliday junction DNA helicase [Chlamydophila abortus S26/3] Length = 337 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 143/310 (46%), Positives = 206/310 (66%), Gaps = 1/310 (0%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D+SL RP+ L+EF GQ + L++F+ AA R E H LF GPPGLGKT+LA +VA Sbjct: 15 DVSL-RPKGLKEFCGQAQLTERLELFLNAAIQRGEVPGHCLFFGPPGLGKTSLAHIVANT 73 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +G SGP + K DL LLT+L++ DV FIDEIHR+ + EE LY AMED+++D+ Sbjct: 74 VGKGLLVASGPQLVKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDYKIDIT 133 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 + GP ARSV ++L+ F+L+ ATTR G+L+ PL+ RF R+ +Y EDL TI++R + Sbjct: 134 IDSGPGARSVSVDLAPFSLVGATTRSGMLSEPLRARFSFTGRVAYYSDEDLATILRRSSN 193 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 L G+ A EIA RSRGTPR+A LLR VRDFA++ I ++A+ AL L ID+ Sbjct: 194 LLGIDADASALYEIARRSRGTPRLANNLLRWVRDFAQMREGNCINSDVAEKALAMLLIDE 253 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G +++D++ LT I + GGPVGI+T+S + E +ED+ EP++I +G +++T RGR Sbjct: 254 WGLNEIDIKLLTTIMNYYQGGPVGIKTLSVAVGEDVRTLEDVYEPFLILKGLLKKTSRGR 313 Query: 318 LLMPIAWQHL 327 ++ +A+ HL Sbjct: 314 MVTQLAYNHL 323 >gi|315452845|ref|YP_004073115.1| Holliday junction ATP-dependent DNA helicase [Helicobacter felis ATCC 49179] gi|315131897|emb|CBY82525.1| Holliday junction ATP-dependent DNA helicase [Helicobacter felis ATCC 49179] Length = 332 Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 156/311 (50%), Positives = 216/311 (69%), Gaps = 1/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E++ GQ + L+V I A R + LDHVLF GPPGLGKTTL+ ++A+EL N Sbjct: 20 LRPSLWEDYIGQEQIKKLLQVSISATLKRQDTLDHVLFFGPPGLGKTTLSHLIAKELNAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K GDLAALLTNL +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G Sbjct: 80 IKVTTAPMIEKTGDLAALLTNLNPKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSK 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +A+++KI+L+ FTLI ATTR GLL+NPL++RFG+ R+ FY IE+L TI+ R + Sbjct: 140 AAAQTIKIDLAPFTLIGATTRAGLLSNPLRERFGMHFRMQFYSIEELATIITRASVKLQK 199 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + DEA+ EIA RSRGTPRIA RLLRRVRDFA+ A+ I+ + AL L ++ GFD Sbjct: 200 EIEDEASIEIAKRSRGTPRIALRLLRRVRDFADHANELCISLQTTLFALEELGVNAHGFD 259 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 LDL YL ++A +G+ TI+A L E IE++IEP+++ G+++RT +GR+ Sbjct: 260 ALDLLYLNLLANA-KNKALGLNTIAASLHEDESTIEEVIEPFLLANGYLERTAKGRIATL 318 Query: 322 IAWQHLGIDIP 332 ++ L + P Sbjct: 319 KTYETLKLTCP 329 >gi|148241223|ref|YP_001226380.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RCC307] gi|166231565|sp|A5GQ68|RUVB_SYNR3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|147849533|emb|CAK27027.1| Holliday junction DNA helicase [Synechococcus sp. RCC307] Length = 344 Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 157/306 (51%), Positives = 208/306 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L ++ GQ E L + +EA + R +ALDHVL GPPGLGKTT+A V+A ELGV+ Sbjct: 36 LRPRRLADYIGQSELKQVLGIAVEATRLRNDALDHVLLYGPPGLGKTTMALVLAEELGVS 95 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R S P + + D+ LL NL+ R++LFIDEIHRL+ + EE+LYPAMEDF+LDL VG G Sbjct: 96 CRIASAPALERPRDIVGLLMNLQPRELLFIDEIHRLNRVAEELLYPAMEDFRLDLTVGAG 155 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR+ + L FTL+ ATT+ G L++PL+DRFG+ RL FY DL+ IV R A+L L Sbjct: 156 PAARTRSLELPPFTLVGATTKAGSLSSPLRDRFGLIQRLEFYSCSDLEAIVSRSAQLLQL 215 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA EIA R RGTPRIA RLLRRVRDFA V + + AL +D G D Sbjct: 216 ELAAEAAAEIARRCRGTPRIANRLLRRVRDFASVRGIAAVGAPVVVEALAMHRVDGRGLD 275 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L+++ ++GGGP G++T++A L E D +E ++EP+++Q GF+QRTPRGR+L Sbjct: 276 PSDRRLLSLLETSYGGGPAGLDTLAAALGEDPDTLEAVVEPFLLQLGFLQRTPRGRVLTD 335 Query: 322 IAWQHL 327 HL Sbjct: 336 AGRAHL 341 >gi|89898409|ref|YP_515519.1| Holliday junction DNA helicase RuvB [Chlamydophila felis Fe/C-56] gi|123735909|sp|Q254B4|RUVB_CHLFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|89331781|dbj|BAE81374.1| holliday junction DNA helicase [Chlamydophila felis Fe/C-56] Length = 337 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 141/306 (46%), Positives = 203/306 (66%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ + L++F+ AA R E H LF GPPGLGKT+LA +VAR +G Sbjct: 18 LRPKGLREFCGQAQLTERLELFLSAALQRGEVPGHCLFFGPPGLGKTSLAHIVARTVGKG 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 SGP + K DL LLT+L++ DV FIDEIHR+ + EE LY AMED+++D+ + G Sbjct: 78 LVVASGPQLVKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDYKIDITIDSG 137 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARS+ ++L+ F+L+ ATTR G+L+ PL+ RF R+++Y EDL TI++R + L G+ Sbjct: 138 PGARSISVDLAPFSLVGATTRSGMLSEPLRARFSFSGRVSYYSDEDLATILKRSSNLLGI 197 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 A EIA RSRGTPR+A LLR VRDFA++ I ++A+ AL L ID G + Sbjct: 198 DADAAALYEIARRSRGTPRLANNLLRWVRDFAQMREGNRINSDVAEKALSMLLIDDWGLN 257 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D++ LT I + GGPVGI+T+S + E +ED+ EP++I +G +++T RGR++ Sbjct: 258 EIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGLLKKTSRGRMVTQ 317 Query: 322 IAWQHL 327 +A+ HL Sbjct: 318 LAYNHL 323 >gi|203287495|ref|YP_002222510.1| Holliday junction DNA helicase [Borrelia recurrentis A1] gi|201084715|gb|ACH94289.1| Holliday junction DNA helicase [Borrelia recurrentis A1] Length = 340 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 144/309 (46%), Positives = 203/309 (65%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L++F+GQ NL +FI+A++ R EALDHV GPPGLGKTTLA ++A E+ Sbjct: 21 LRPEFLKDFSGQSHIKDNLDIFIKASRDRNEALDHVFLSGPPGLGKTTLASIIALEMNTT 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P K D+ +L L D+ VLFIDEIHRL +EE+LY AMED+++D +VG+G Sbjct: 81 IKITSAPAFEKPKDIVGILMTLNDKSVLFIDEIHRLKPAIEEMLYIAMEDYKIDCIVGQG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 AR+V++++ +FTLI ATT+ G + +PL RFGI R + Y ++L I++R A + + Sbjct: 141 AVARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVFRFDLYNEDELSKIIKRSAFILNV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+AA +A SRGTPR+A +LLRR+RDFA+V IT ++ A L L ID G D Sbjct: 201 KLNDKAALLLAKSSRGTPRMANKLLRRMRDFAQVGGYDLITEDVVTAGLEMLKIDHEGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D L + F GGPVGIET++ + E D++ED EPY+I +GFI+RT RGR Sbjct: 261 EQDRNILKNLILKFRGGPVGIETLAIAVGETADSLEDFYEPYLILRGFIERTNRGRRATD 320 Query: 322 IAWQHLGID 330 A+ HL ++ Sbjct: 321 FAYLHLNLN 329 >gi|78211670|ref|YP_380449.1| Holliday junction DNA helicase B [Synechococcus sp. CC9605] gi|97190404|sp|Q3AND8|RUVB_SYNSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|78196129|gb|ABB33894.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CC9605] Length = 348 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 152/308 (49%), Positives = 207/308 (67%), Gaps = 2/308 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+++ GQ E L + ++AA R +ALDHVL GPPGLGKTT+A V+A E+GV+ Sbjct: 37 LRPQRLDDYIGQSELKQVLGIAVQAALGRGDALDHVLLYGPPGLGKTTMAMVLAEEMGVH 96 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P + + D+ LL NL+ RD+LFIDEIHRLS + EE+LYPAMED +LDL VG+G Sbjct: 97 CKVTSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLSRVAEELLYPAMEDRRLDLTVGKG 156 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+ ++L FTL+ ATTR G L++PL+DRFG+ RL FY DL+ IV+R A L G+ Sbjct: 157 STARTRSLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGQGDLEAIVERTAGLIGV 216 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--AHAKTITREIADAALLRLAIDKMG 259 +T +A IA RGTPRIA RLLRRVRD A V I + + AL +D G Sbjct: 217 TLTPQARSSIAASCRGTPRIANRLLRRVRDVASVRGGGGGAINQALVGEALSLHRVDHRG 276 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 D D R L ++ + GGGPVG+ET++A L + +E ++EP+++QQG + RTPRGR++ Sbjct: 277 LDASDRRLLQLLIDHHGGGPVGLETLAAALGDDPVTLETVVEPFLMQQGLLMRTPRGRMV 336 Query: 320 MPIAWQHL 327 A HL Sbjct: 337 TDAARSHL 344 >gi|206900986|ref|YP_002251319.1| holliday junction DNA helicase RuvB [Dictyoglomus thermophilum H-6-12] gi|206740089|gb|ACI19147.1| holliday junction DNA helicase RuvB [Dictyoglomus thermophilum H-6-12] Length = 332 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 146/316 (46%), Positives = 210/316 (66%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V +E A + LRP++L EF GQ + L + I AAK R EA+DH+LFVGPPG+GKTTLA Sbjct: 10 VQREPALDNALRPKSLSEFIGQEKIKERLALIINAAKKREEAIDHILFVGPPGVGKTTLA 69 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A E + S P I K+GDL ALLT +E++ V+FIDEIHRLS +EEILY A+ED Sbjct: 70 LIIAEEQNTQIKMISAPSIQKSGDLIALLTGIEEKGVIFIDEIHRLSPSLEEILYSALED 129 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + ++ G+GP + + + L FTLI ATTR LL+ PL+DRFG L+FY E++ I Sbjct: 130 GSISIVAGKGPGGKVLSLKLPPFTLIGATTRPALLSTPLRDRFGFIATLDFYTHEEMVKI 189 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R K+ GL ++ E+ E+A RSRG PRIA R+L+R++D+ ++ K I L Sbjct: 190 IERSQKILGLNLSYESIYEVAKRSRGVPRIANRILKRIKDYVDLRDNKNIDLTETKKVLE 249 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 + ID+ G D+LD + L + F GGPVG++T++A L+E + IE + EPY+++ GFIQ Sbjct: 250 LIGIDENGLDELDRKILFTLKDKFSGGPVGLKTLAAVLNESPETIESIYEPYLLRIGFIQ 309 Query: 312 RTPRGRLLMPIAWQHL 327 RT RGR++ P+ H+ Sbjct: 310 RTSRGRVITPLGLAHI 325 >gi|203283952|ref|YP_002221692.1| Holliday junction DNA helicase [Borrelia duttonii Ly] gi|201083395|gb|ACH92986.1| Holliday junction DNA helicase [Borrelia duttonii Ly] Length = 340 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 143/309 (46%), Positives = 203/309 (65%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L++F+GQ NL +FI+A++ R EALDHV GPPGLGKTTLA ++A E+ Sbjct: 21 LRPEFLKDFSGQSHIKDNLDIFIKASRDRNEALDHVFLSGPPGLGKTTLASIIALEMNTT 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P K D+ +L L D+ VLFIDEIHRL +EE+LY AMED+++D +VG+G Sbjct: 81 IKITSAPAFEKPKDIVGILMTLNDKSVLFIDEIHRLKPAIEEMLYIAMEDYKIDCIVGQG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 AR+V++++ +FTLI ATT+ G + +PL RFGI R + Y ++L I++R A + + Sbjct: 141 AVARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVFRFDLYNEDELSKIIKRSAFILNV 200 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + D+AA +A SRGTPR+A +LLRR+RDFA+V IT ++ A L L ID G D Sbjct: 201 KLNDKAALLLAKSSRGTPRMANKLLRRMRDFAQVGGYDLITEDVVTAGLEMLKIDHEGLD 260 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D L + F GGPVGIET++ + E D++ED EPY++ +GFI+RT RGR Sbjct: 261 EQDRNILKNLILKFRGGPVGIETLAIAVGETADSLEDFYEPYLVLRGFIERTNRGRRATD 320 Query: 322 IAWQHLGID 330 A+ HL ++ Sbjct: 321 FAYLHLNLN 329 >gi|33241224|ref|NP_876166.1| Holliday junction DNA helicase B [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|44888417|sp|Q7V9Q4|RUVB_PROMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|33238754|gb|AAQ00819.1| Holliday junction resolvasome helicase subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 356 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 160/319 (50%), Positives = 219/319 (68%), Gaps = 5/319 (1%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 V +ED+ LRP+ +EF GQ L + ++AA +R EALDHVL GPPGLGKTT+ Sbjct: 33 KVRKEDS----LRPKCWDEFIGQSALKEVLGISVKAALSRKEALDHVLLYGPPGLGKTTM 88 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A V+ ELGV R TS P + + D+ LL NLE ++LF+DEIHRLS + EE+LYPA+E Sbjct: 89 ALVLGNELGVKCRITSAPALERPRDIIGLLLNLEPNELLFVDEIHRLSKVAEELLYPALE 148 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF++DL VG+G +AR+ +INL RFTL+ ATT+ +++PL+DRFGI RLNFY I DL Sbjct: 149 DFRIDLTVGKGTTARTREINLPRFTLVGATTKPASISSPLRDRFGITQRLNFYSISDLNR 208 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KTITREIADAA 249 I+QR A L GL++T +A EIA R RGTPRIA RLLRRVRD+A V + K + + + D + Sbjct: 209 IIQRAADLFGLSLTGDAGLEIARRCRGTPRIANRLLRRVRDYATVQNQLKLVDKSLVDKS 268 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L +D+ G DQ D R+L I GGPVG++T++A L E +E ++EP+++Q GF Sbjct: 269 LTLHQVDECGLDQSDRRFLLFIIDVHNGGPVGLDTLAAALGEEAATLESVVEPFLLQIGF 328 Query: 310 IQRTPRGRLLMPIAWQHLG 328 ++RT RGR++ A +HL Sbjct: 329 LKRTSRGRVITQAALEHLN 347 >gi|187917905|ref|YP_001883468.1| Holliday junction DNA helicase RuvB [Borrelia hermsii DAH] gi|238689304|sp|B2S1L1|RUVB_BORHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|119860753|gb|AAX16548.1| Holliday junction DNA helicase RuvB [Borrelia hermsii DAH] Length = 352 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 146/322 (45%), Positives = 206/322 (63%), Gaps = 7/322 (2%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 D+ L RN S+ LRP+ L +F GQ NL VFI+A++ R EALDHV GP Sbjct: 13 DKNFLYDRNESE-------LRPKFLRDFAGQSHIKENLSVFIKASRDRNEALDHVFLSGP 65 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 PGLGKTTLA ++A E+ + TS P + K D+ +LT L+D+ +LFIDE+HRL ++E Sbjct: 66 PGLGKTTLASIIAVEMNTTIKVTSAPALDKPKDIVGILTTLDDKSILFIDEMHRLKPVIE 125 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 E+LY AMED+++D ++G+GP+AR+V++++ +FTLI ATT+ G + +PL RFGI R Sbjct: 126 EMLYIAMEDYKIDWIIGQGPAARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVSRFEL 185 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 Y ++L I+QR + + + D+AA +A SRGTPR+A RLLRR+RDFA+V IT Sbjct: 186 YSEDELVKIIQRNSIILNVKFEDKAAWLLAKSSRGTPRVANRLLRRMRDFAQVGGYDLIT 245 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 I L L ID G D+ D L + F GGPVG+ET++ + E D++ED EP Sbjct: 246 ENIVSDGLEMLKIDHEGLDEQDRNILRSLILKFKGGPVGVETLAISVGETADSLEDFYEP 305 Query: 303 YMIQQGFIQRTPRGRLLMPIAW 324 Y+I +G I+RT RGR A+ Sbjct: 306 YLILKGLIERTSRGRKATDFAY 327 >gi|283782242|ref|YP_003372997.1| Holliday junction DNA helicase RuvB [Pirellula staleyi DSM 6068] gi|283440695|gb|ADB19137.1| Holliday junction DNA helicase RuvB [Pirellula staleyi DSM 6068] Length = 352 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 150/326 (46%), Positives = 211/326 (64%), Gaps = 1/326 (0%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M RE +LS + + + D L RP+ + + GQ E L++ ++AA+ R++ L H+LF G Sbjct: 22 MPREAILSAEIPEPEEDRDL-RPQRMADMVGQQEVIERLRIVVDAARKRSDTLGHILFDG 80 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTT A + REL V ++SGP + DL LTNLE VLFIDEIHR+ V Sbjct: 81 PPGLGKTTFANCIPRELNVPLVTSSGPALKAPKDLIPYLTNLEPNSVLFIDEIHRMPKPV 140 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE LY AMEDF+LD+++GEG +AR++ + L FTLI ATTR G+L++PL+DRF + L Sbjct: 141 EEYLYTAMEDFRLDIVLGEGVNARTINLKLKPFTLIGATTRAGMLSSPLRDRFAVREHLG 200 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 FY +++L IV+R A + +AA EIA RSRGTPRIA LR VRD+AE + I Sbjct: 201 FYTVDELTEIVRRSAAKLSCNIAGDAAIEIARRSRGTPRIANHRLRWVRDYAEAKSSGQI 260 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 T +A AAL ID +G D+ D YL I R F GGPVG+++++ ++ D + D +E Sbjct: 261 TVAVAQAALAMSGIDILGLDKQDRAYLETILRVFSGGPVGVDSVAHTMNLATDTLSDEVE 320 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327 P++++ I R+PRGR+L A++HL Sbjct: 321 PFLLRCELIVRSPRGRMLTSKAFEHL 346 >gi|217967993|ref|YP_002353499.1| Holliday junction DNA helicase RuvB [Dictyoglomus turgidum DSM 6724] gi|217337092|gb|ACK42885.1| Holliday junction DNA helicase RuvB [Dictyoglomus turgidum DSM 6724] Length = 334 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 145/316 (45%), Positives = 210/316 (66%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V +E A ++LRP+ L +F GQ L + I AAK R EA+DH+LFVGPPG+GKTTLA Sbjct: 12 VQREPALDNVLRPKNLSDFIGQERIKDRLALIINAAKKREEAVDHILFVGPPGVGKTTLA 71 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A E + S P + K+GDL ALLT++E+R ++FIDEIHRL+ +EEILY A+ED Sbjct: 72 LIIAEEQNAPIKMVSAPSLQKSGDLIALLTSVEERGIIFIDEIHRLNPSLEEILYSALED 131 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + ++ G+GP + + I L FTL+ ATTR LL++PL+DRFG L+FY E++ I Sbjct: 132 RSVSIVTGKGPGGKVLSIKLPPFTLVGATTRPALLSSPLRDRFGFIANLDFYTHEEMVKI 191 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++R K+ GL + E+ EIA RSRG PRIA R+L+R++D+ ++ K I E L Sbjct: 192 IERSQKILGLNLPYESIIEIAKRSRGVPRIANRILKRIKDYIDLKEEKNINLEETKRVLE 251 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 + ID+ G D+LD + L + F GGPVG++ ++A L+E D IE + EPY+++ GFIQ Sbjct: 252 LIGIDEKGLDELDRKILFALRDKFSGGPVGLKALAAVLNESPDTIESIYEPYLLRIGFIQ 311 Query: 312 RTPRGRLLMPIAWQHL 327 RT RGR++ P+ H+ Sbjct: 312 RTSRGRIITPLGLAHI 327 >gi|16331552|ref|NP_442280.1| Holliday junction DNA helicase RuvB [Synechocystis sp. PCC 6803] gi|2498877|sp|Q57396|RUVB_SYNY3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|1001619|dbj|BAA10350.1| Holliday junction DNA helicase; RuvB [Synechocystis sp. PCC 6803] gi|1256590|gb|AAA96396.1| RuvB [Synechocystis sp. PCC 6803] Length = 361 Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 148/324 (45%), Positives = 215/324 (66%), Gaps = 3/324 (0%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S + Q++A LRP+ L ++ GQ + L++ I+AA+ R EA+DH+L GPPGLGKT Sbjct: 32 SPELEQQEAS---LRPQRLADYIGQRDLKEVLRIAIQAAQGRQEAIDHLLLYGPPGLGKT 88 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA ++A E+ V + T+ P + + D+ LL L+ D+LFIDEIHRL+ + EE+LYPA Sbjct: 89 TLALILAEEMQVRCKITAAPALERPRDITGLLLALQPGDILFIDEIHRLNRLTEELLYPA 148 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDF+LD+ +G+G SA+ + L+ FTL+ ATT+VG LT+PL+DRFG+ RL FYE+++L Sbjct: 149 MEDFRLDITMGKGQSAKVRSLKLAHFTLVGATTKVGSLTSPLRDRFGLIQRLRFYEVDEL 208 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + I+ R A + ++++ A IAMR+RGTPRIA RLL+RVRD+A+V I +A Sbjct: 209 QQIILRTAGILSVSISPTGAEAIAMRARGTPRIANRLLKRVRDYAQVKQQPEIDPALASE 268 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL +DK G D D L + F GGP G+E I+A E IE++ EPY++Q G Sbjct: 269 ALDLYQVDKRGLDWTDRLVLQTLIEQFQGGPTGLEAIAAATGEDAKTIEEVYEPYLLQIG 328 Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332 ++ RT RGR+ A++HLG+ P Sbjct: 329 YLARTSRGRIATTAAYEHLGLTPP 352 >gi|23335123|ref|ZP_00120361.1| COG2255: Holliday junction resolvasome, helicase subunit [Bifidobacterium longum DJO10A] gi|189439316|ref|YP_001954397.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum DJO10A] gi|238692057|sp|B3DRY0|RUVB_BIFLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189427751|gb|ACD97899.1| Holliday junction resolvasome helicase subunit [Bifidobacterium longum DJO10A] Length = 348 Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 150/315 (47%), Positives = 210/315 (66%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+ + E LRP L F GQ + L++F++AA+ R DH+L GPPGLGKT Sbjct: 24 SQPIGNEPVSDEELRPHVLGGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 TLA +VA EL V R TSGP + AGDLA++L++L+ +VLFIDEIHRL EE+LY A Sbjct: 84 TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG L+FY E+L Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + +++R A + G+ + +A E+A+RSRGTPRIA RLLRRVRD+A V + + Sbjct: 204 EKLIERSANVLGVNLDTGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL ID G D+LD+ L I RNF GGPVG+ ++A + E + +E + EPY++++G Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323 Query: 309 FIQRTPRGRLLMPIA 323 F+ RTP+GR+ +A Sbjct: 324 FMIRTPKGRVATELA 338 >gi|284929534|ref|YP_003422056.1| Holliday junction DNA helicase subunit RuvB [cyanobacterium UCYN-A] gi|284809978|gb|ADB95675.1| Holliday junction DNA helicase subunit RuvB [cyanobacterium UCYN-A] Length = 352 Score = 292 bits (747), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 141/306 (46%), Positives = 207/306 (67%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + +E+ GQ + + L + I+AAK R E +DH+L GPPGLGKTT++ ++A E+GV+ Sbjct: 41 IRPNSFKEYIGQKDLKNVLDIIIKAAKLREEPIDHLLLYGPPGLGKTTISLILASEMGVD 100 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P + K D+ LL L+ DVLFIDEIHRL+ + EEILYP MED++LD+ +G+G Sbjct: 101 CKITSAPSLEKPKDIIGLLVKLKPGDVLFIDEIHRLNHLTEEILYPVMEDYRLDITIGKG 160 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 + I+L +FTLI ATT++G ++ PL+DRFG+ RL +YE +L I++R A + Sbjct: 161 QLTKISSISLPKFTLIGATTKIGSISFPLRDRFGLVQRLKYYEYHELALIIKRSALVLKT 220 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 +TDE A EIA+RSRGTPRIA RLL+R+RD+ +V IT+++A AL ID G + Sbjct: 221 PITDEGANEIAIRSRGTPRIANRLLKRIRDYMQVKQMNLITKDLAIDALNLYKIDSRGLN 280 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D L + F GGPVG+E I+A E I+++ EPY++Q G+I RTPRGR++ Sbjct: 281 WTDHLILETMIFQFNGGPVGLEAIAASTGEDIKTIKEVYEPYLLQIGYINRTPRGRVVTE 340 Query: 322 IAWQHL 327 A++++ Sbjct: 341 AAYKYI 346 >gi|256825357|ref|YP_003149317.1| Holliday junction DNA helicase subunit RuvB [Kytococcus sedentarius DSM 20547] gi|256688750|gb|ACV06552.1| Holliday junction DNA helicase subunit RuvB [Kytococcus sedentarius DSM 20547] Length = 357 Score = 292 bits (747), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 155/322 (48%), Positives = 207/322 (64%), Gaps = 1/322 (0%) Query: 12 VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 Q+DA + LRP+ L + GQ L + +EAA+ R DH+L GPPGLGKTTL Sbjct: 22 AGQDDAGFDAALRPKRLADLAGQDRVRDQLHLVLEAARRRGAPADHILLSGPPGLGKTTL 81 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A +VA E+ R TSGP I AGDLAA+L++L + +VLF+DEIHR+S EE+LY AME Sbjct: 82 AMIVAGEMAAPIRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRAAEEMLYLAME 141 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF++D++VG+GP A ++ + L FT++ ATTR GLL PL+DRFG L++Y EDL T Sbjct: 142 DFRVDVIVGKGPGATAIPLELPPFTVVGATTRSGLLPAPLRDRFGFTGHLDYYTAEDLAT 201 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 I+ A G+ E EIA RSRGTPRIA RLLRRVRD+A+V ++ E A AL Sbjct: 202 ILAGNAVKLGIESEPEGISEIAGRSRGTPRIANRLLRRVRDWAQVHGQHVVSAEAAREAL 261 Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 +D +G D+LD L + F GGPVG+ T++ + E D +E + EPY++++GFI Sbjct: 262 ALFDVDLLGLDRLDRAVLEALCHRFDGGPVGLTTLAVAVGEEADTVETVAEPYLVREGFI 321 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 RTPRGR AW+HLG P Sbjct: 322 VRTPRGRAATTAAWEHLGTRPP 343 >gi|170078004|ref|YP_001734642.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7002] gi|238692802|sp|B1XMA0|RUVB_SYNP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|169885673|gb|ACA99386.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7002] Length = 363 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 156/317 (49%), Positives = 216/317 (68%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 ++ A+ +RP+ L ++ GQ + L + I AAKAR E LDH+L GPPGLGKTT++ Sbjct: 34 QEQSANEDRIRPQRLGDYLGQKDLKEVLGIAIAAAKARREPLDHMLLYGPPGLGKTTMSL 93 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++A E+GVN + T+ P + + D++ LL LE D+LFIDEIHRL+ + EE+LYPAMED Sbjct: 94 ILAAEMGVNCKITAAPALERPRDISGLLVGLEAGDILFIDEIHRLNRMAEELLYPAMEDG 153 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 +LD+ +G+G SAR+ I L FTLI ATT+VG LT+PL+DRFG+ RL FYE+++L IV Sbjct: 154 RLDVTIGKGVSARTRSIPLKPFTLIGATTKVGALTSPLRDRFGLIQRLRFYEVDELIAIV 213 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R A + +T E A EIA R+RGTPRIA RLLRR+RD+A+V I++ +A AL Sbjct: 214 HRSALILEQPITPEGALEIARRARGTPRIANRLLRRIRDYAQVKGYGEISQTVAATALDL 273 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 +D +G D D L + +FGGGPVG+E I+A E IE++ EPY++Q GF+ R Sbjct: 274 YNVDALGLDWTDRLILETMLNHFGGGPVGLEAIAAATGEDSKTIEEVYEPYLLQIGFLNR 333 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR++ A QHLG+ Sbjct: 334 TPRGRIVSAKARQHLGL 350 >gi|229820485|ref|YP_002882011.1| Holliday junction DNA helicase RuvB [Beutenbergia cavernae DSM 12333] gi|229566398|gb|ACQ80249.1| Holliday junction DNA helicase RuvB [Beutenbergia cavernae DSM 12333] Length = 345 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 155/318 (48%), Positives = 212/318 (66%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E A + LRPR L EF GQ L + +EAA AR DHVL G PGLGKTTLA +V Sbjct: 20 ERAAEAALRPRRLAEFVGQRVVRDQLSLVLEAALARRRPPDHVLLAGGPGLGKTTLAMIV 79 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 A E+G R TSGP I AGDLAA+L+++++ DVLFIDEIHRL+ EE+LY AMEDF++ Sbjct: 80 ASEVGAALRLTSGPAIQHAGDLAAILSSVQENDVLFIDEIHRLARPAEEMLYLAMEDFRV 139 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 D++VG+G A ++ + L FT++ ATTR GLL PL+DRFG L+FYE+ +L+ +++R Sbjct: 140 DVVVGKGAGATAIPLALPPFTVVGATTRAGLLPAPLRDRFGFTGYLDFYEVAELEQVLER 199 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 A+L +T A EIA RSRGTPRIA RLLRRV+D+A+V + + A AAL Sbjct: 200 SARLLRAELTPAAGAEIASRSRGTPRIANRLLRRVQDWAQVRGSGVADVDAARAALEVFE 259 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D+ G D+LD L + F GGPVG+ T++ + E + +E + EP+++++G I RTP Sbjct: 260 VDERGLDRLDRGVLRALCVRFRGGPVGLGTLAVAVGEEPETVETVAEPFLVREGLIARTP 319 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW HLG++ P Sbjct: 320 RGRVATAEAWAHLGLEPP 337 >gi|144900759|emb|CAM77623.1| Holliday junction DNA helicase RuvB [Magnetospirillum gryphiswaldense MSR-1] Length = 255 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 135/224 (60%), Positives = 178/224 (79%) Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 +FIDEIHRL+ +EE+LYPAMEDFQLDL++GEGP+ARSV+I+L FTL+ ATTR GLLT Sbjct: 1 MFIDEIHRLNPAIEEVLYPAMEDFQLDLIIGEGPAARSVRIDLPPFTLVGATTRSGLLTT 60 Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228 PL++RFGIP R+N+Y ++L+ IV RGA++ G VT + A E+A R+RGTPR+AGRLLRR Sbjct: 61 PLRERFGIPCRMNYYTPQELELIVARGARVLGFDVTPDGAAEVARRARGTPRVAGRLLRR 120 Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288 VRDFA VA + ++AD AL RL +D+MG D +D RYL IA N+GGGPVG++T++A Sbjct: 121 VRDFAAVAGQSPVDAQVADRALTRLEVDQMGLDAMDRRYLKCIADNYGGGPVGVDTLAAA 180 Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 LSE RD +E++ EPY++QQG IQRTPRGR+L QH+G++ P Sbjct: 181 LSESRDTLEEVGEPYLLQQGLIQRTPRGRMLSSARIQHMGLNPP 224 >gi|225552200|ref|ZP_03773140.1| holliday junction DNA helicase RuvB [Borrelia sp. SV1] gi|225371198|gb|EEH00628.1| holliday junction DNA helicase RuvB [Borrelia sp. SV1] Length = 347 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 144/310 (46%), Positives = 202/310 (65%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ E+F GQV L +FI A+K R EALDHV GPPGLGKTTLA ++A E+ + Sbjct: 25 LRPKVFEDFKGQVNVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P K D+ +LT L+++ VLFIDEIHRL I+EE+L AMED++LD ++G+G Sbjct: 85 IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+V++ L +FTLI ATT+ G +T+PL RFGI R Y +L I++R + + + Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYSRFGITARFELYSEIELVEIIKRNSLILNI 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA +A SRGTPRIA RLLRR+RD A+V + IT +I L L ID G D Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVITSDIVSIGLEMLRIDGEGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D L + F GGPVG++T++ + E D++ED EPY+I +GFI RT RGR Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRKATE 324 Query: 322 IAWQHLGIDI 331 A+ HL +++ Sbjct: 325 FAYLHLNLEM 334 >gi|296436481|gb|ADH18651.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis G/11222] Length = 334 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 139/306 (45%), Positives = 202/306 (66%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ + L +F+ AA R E H LF GPPGLGKT+LA ++A +G Sbjct: 18 LRPKKLTEFCGQKQLKERLDLFLRAAVQRNEVPGHCLFYGPPGLGKTSLAHIMANTIGKG 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 SGP + K DL LLT L++ D+ FIDEIHR+ EE LYPAMEDF++D+ + G Sbjct: 78 LVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMEDFKVDITLDSG 137 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARSV+++L+ FTL+ ATTR G+L+ PL+ RF R+++Y EDL +I+ R ++L + Sbjct: 138 PGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSILSRSSQLLAI 197 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 E EIA R+RGTPR+A LLR VRDFA++ I +A+ AL L ID +G + Sbjct: 198 EANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALAMLLIDNLGLN 257 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D++ L+++ + GGPVGI+T++ + E +ED+ EP++I +G +QRT RGR+ P Sbjct: 258 EIDIKLLSVMIDFYQGGPVGIKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATP 317 Query: 322 IAWQHL 327 +A++HL Sbjct: 318 LAYEHL 323 >gi|219684815|ref|ZP_03539757.1| holliday junction DNA helicase RuvB [Borrelia garinii PBr] gi|219671760|gb|EED28815.1| holliday junction DNA helicase RuvB [Borrelia garinii PBr] Length = 347 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 143/310 (46%), Positives = 202/310 (65%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ E+F GQV L +FI A+K R EALDHV GPPGLGKTTLA ++A E+ + Sbjct: 25 LRPKVFEDFKGQVNVKETLSIFIRASKERGEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P K D+ +LT L+++ VLFIDEIHRL I+EE+L AMED++LD ++G+G Sbjct: 85 IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+V++ L +FTLI ATT+ G +T+PL RFGI R Y +L I++R + + + Sbjct: 145 SNARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSIILNI 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA +A SRGTPRIA RLLRR+RD A+V + +T +I L L ID G D Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVVTSDIVSIGLEMLRIDGEGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D L + F GGPVG++T++ + E D++ED EPY+I +GFI RT RGR Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFINRTHRGRKATE 324 Query: 322 IAWQHLGIDI 331 A+ HL +++ Sbjct: 325 FAYLHLNLEM 334 >gi|219685282|ref|ZP_03540101.1| holliday junction DNA helicase RuvB [Borrelia garinii Far04] gi|219673055|gb|EED30075.1| holliday junction DNA helicase RuvB [Borrelia garinii Far04] Length = 347 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 143/310 (46%), Positives = 202/310 (65%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ E+F GQV L +FI A+K R EALDHV GPPGLGKTTLA ++A E+ + Sbjct: 25 LRPKVFEDFKGQVNVKETLSIFIRASKERGEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P K D+ +LT L+++ VLFIDEIHRL I+EE+L AMED++LD ++G+G Sbjct: 85 IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+V++ L +FTLI ATT+ G +T+PL RFGI R Y +L I++R + + + Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSVILNI 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA +A SRGTPRIA RLLRR+RD A+V + +T +I L L ID G D Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVVTSDIVSIGLEMLRIDGEGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D L + F GGPVG++T++ + E D++ED EPY+I +GFI RT RGR Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFINRTHRGRKATE 324 Query: 322 IAWQHLGIDI 331 A+ HL +++ Sbjct: 325 FAYLHLNLEM 334 >gi|50954748|ref|YP_062036.1| Holliday junction DNA helicase B [Leifsonia xyli subsp. xyli str. CTCB07] gi|68715445|sp|Q6AFB4|RUVB_LEIXX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|50951230|gb|AAT88931.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 347 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 150/311 (48%), Positives = 202/311 (64%), Gaps = 1/311 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL EF GQ + L++ + AA+ + DH+L GPPGLGKTTLA +VA E Sbjct: 24 LRPRTLAEFVGQAKVRGQLQLLLTAARMQERTADHILLAGPPGLGKTTLAMIVAHESDRP 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R +SGP I AGDLAALL++L +VLFIDEIHR++ EE+LY AMEDF++D+MVG+G Sbjct: 84 LRLSSGPAIQHAGDLAALLSSLTPGEVLFIDEIHRMARTAEEMLYLAMEDFRIDIMVGKG 143 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A S+ ++L+ FTL+ ATTR GLL NPL+DRFG L FY+ +L ++ R A + Sbjct: 144 AGATSIPLDLAPFTLVGATTRSGLLPNPLRDRFGFTAHLEFYDEGELAQVLARAAVMLEF 203 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EA EIA R RGTPRIA RLLRRVRD+A V H AAL ++++G D Sbjct: 204 EIDGEALAEIAGRCRGTPRIANRLLRRVRDYALV-HGGRADIAAVHAALELYDVNELGLD 262 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +LD L I F GGPVG+ T++ + E + IE ++EP++++ G + RTPRGR+ Sbjct: 263 RLDRAVLHAILERFEGGPVGLNTLAVSVGEEPETIESVVEPFLVRIGLLSRTPRGRVATV 322 Query: 322 IAWQHLGIDIP 332 AW+H G+ P Sbjct: 323 AAWRHFGLAAP 333 >gi|51598285|ref|YP_072473.1| Holliday junction DNA helicase RuvB [Borrelia garinii PBi] gi|68715417|sp|Q662Z0|RUVB_BORGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|51572856|gb|AAU06881.1| Holliday junction DNA helicase [Borrelia garinii PBi] Length = 347 Score = 288 bits (738), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 147/327 (44%), Positives = 208/327 (63%), Gaps = 1/327 (0%) Query: 6 GLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 LS N S D + LRP+ E+F GQV L +FI A+K R EALDHV GPPG Sbjct: 8 NFLSSNESYLYDKSENELRPKVFEDFKGQVNVKETLSIFIRASKERGEALDHVFLSGPPG 67 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LGKTTLA ++A E+ + + TS P K D+ +LT L+++ +LFIDEIHRL I+EE+ Sbjct: 68 LGKTTLASIIAFEMNASIKITSAPAFDKPKDIIGILTGLDEKSILFIDEIHRLRPIIEEM 127 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 L AMED++LD ++G+G +AR+V++ L +FTLI ATT+ G +T+PL RFGI R Y Sbjct: 128 LCIAMEDYELDWVIGQGANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYS 187 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +L I++R + + + + ++AA +A SRGTPRIA RLLRR+RD A+V + +T + Sbjct: 188 EIELVEIIKRNSIILNIEIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVVTSD 247 Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 I L L ID G D+ D L + F GGPVG++T++ + E D++ED EPY+ Sbjct: 248 IVSIGLEMLRIDGEGLDEQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYL 307 Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331 I +GFI RT RGR A+ HL +++ Sbjct: 308 IMKGFINRTHRGRKATEFAYLHLNLEM 334 >gi|15834930|ref|NP_296689.1| Holliday junction DNA helicase B [Chlamydia muridarum Nigg] gi|270285100|ref|ZP_06194494.1| Holliday junction DNA helicase RuvB [Chlamydia muridarum Nigg] gi|270289122|ref|ZP_06195424.1| Holliday junction DNA helicase RuvB [Chlamydia muridarum Weiss] gi|301336496|ref|ZP_07224698.1| Holliday junction DNA helicase RuvB [Chlamydia muridarum MopnTet14] gi|13431874|sp|Q9PKZ8|RUVB_CHLMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|7190351|gb|AAF39175.1| Holliday junction DNA helicase RuvB [Chlamydia muridarum Nigg] Length = 330 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 140/306 (45%), Positives = 201/306 (65%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ + L +F+ AA R E H LF GPPGLGKT+LA ++A +G Sbjct: 18 LRPKKLTEFYGQKQLKERLDLFLRAAVQRKEVPGHCLFYGPPGLGKTSLAHIMANTVGKG 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 SGP + K DL LLT L++ DV FIDEIHR+ EE LYPAMEDF++D+ + G Sbjct: 78 LVIASGPQLLKPSDLIGLLTGLQEGDVFFIDEIHRMGKTAEEYLYPAMEDFKVDITLDSG 137 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARSV+++L+ FTL+ ATTR G+L+ PL+ RF R+++Y EDL I+ R A+L + Sbjct: 138 PGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYNEEDLVAILSRSAQLLSI 197 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 E EIA R+RGTPR+A LLR VRDFA++ I +A+ AL L ID +G + Sbjct: 198 EANKETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSVVAEKALAMLLIDNLGLN 257 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D++ L+++ + GGPVG++T++ + E +ED+ EP++I +G +QRT RGR+ P Sbjct: 258 EIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATP 317 Query: 322 IAWQHL 327 +A++HL Sbjct: 318 LAYEHL 323 >gi|15594368|ref|NP_212156.1| Holliday junction DNA helicase RuvB [Borrelia burgdorferi B31] gi|218249701|ref|YP_002374556.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi ZS7] gi|221217414|ref|ZP_03588885.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 72a] gi|223889127|ref|ZP_03623716.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 64b] gi|224532569|ref|ZP_03673192.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi WI91-23] gi|224533948|ref|ZP_03674533.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi CA-11.2a] gi|225549285|ref|ZP_03770258.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 94a] gi|225549757|ref|ZP_03770722.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 118a] gi|226321148|ref|ZP_03796689.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 29805] gi|226322063|ref|ZP_03797588.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi Bol26] gi|3122844|sp|P70828|RUVB_BORBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|1620917|emb|CAA70097.1| B subunit of RuvAB helicase [Borrelia burgdorferi] gi|2687900|gb|AAC66410.1| Holliday junction DNA helicase (ruvB) [Borrelia burgdorferi B31] gi|218164889|gb|ACK74950.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi ZS7] gi|221192692|gb|EEE18908.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 72a] gi|223885376|gb|EEF56477.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 64b] gi|224512512|gb|EEF82890.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi WI91-23] gi|224512951|gb|EEF83317.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi CA-11.2a] gi|225369717|gb|EEG99165.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 118a] gi|225370143|gb|EEG99583.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 94a] gi|226232653|gb|EEH31407.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi Bol26] gi|226233440|gb|EEH32180.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 29805] gi|312147772|gb|ADQ30431.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi JD1] gi|312149274|gb|ADQ29345.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi N40] Length = 347 Score = 288 bits (737), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 144/310 (46%), Positives = 202/310 (65%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ E+F GQV L +FI A+K R EALDHV GPPGLGKTTLA ++A E+ + Sbjct: 25 LRPKVFEDFKGQVNVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P K D+ +LT L+++ VLFIDEIHRL I+EE+L AMED++LD ++G+G Sbjct: 85 IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+V++ L +FTLI ATT+ G +T+PL RFGI R Y +L I++R + + + Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSLILNI 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA +A SRGTPRIA RLLRR+RD A+V + IT +I L L ID G D Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVITSDIVSIGLEMLRIDGEGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D L + F GGPVG++T++ + E D++ED EPY+I +GFI RT RGR Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRKATE 324 Query: 322 IAWQHLGIDI 331 A+ HL +++ Sbjct: 325 FAYLHLNLEM 334 >gi|255310842|ref|ZP_05353412.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis 6276] gi|255317142|ref|ZP_05358388.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis 6276s] Length = 334 Score = 288 bits (737), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 138/306 (45%), Positives = 202/306 (66%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ + L +F+ AA R E H LF GPPGLGKT+LA ++A +G Sbjct: 18 LRPKKLTEFCGQKQLKERLDLFLRAAVQRKEVPGHCLFYGPPGLGKTSLAHIMANTIGKG 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 SGP + K DL LLT L++ D+ FIDEIHR+ EE LYPAMEDF++D+ + G Sbjct: 78 LVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMEDFKVDITLDSG 137 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARSV+++L+ FTL+ ATTR G+L+ PL+ RF R+++Y EDL +I+ R ++L + Sbjct: 138 PGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSILSRSSQLLSI 197 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 E EIA R+RGTPR+A LLR VRDFA++ I +A+ AL L ID +G + Sbjct: 198 EANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALAMLLIDNLGLN 257 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D++ L+++ + GGPVG++T++ + E +ED+ EP++I +G +QRT RGR+ P Sbjct: 258 EIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATP 317 Query: 322 IAWQHL 327 +A++HL Sbjct: 318 LAYEHL 323 >gi|15613788|ref|NP_242091.1| Holliday junction DNA helicase RuvB [Bacillus halodurans C-125] gi|10173841|dbj|BAB04944.1| holliday junction DNA helicase (DNA-binding protein) [Bacillus halodurans C-125] Length = 253 Score = 288 bits (737), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 135/253 (53%), Positives = 193/253 (76%) Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGP I + GDLAA+LT LE DVLFIDEIHRL+ +VEE+LYPAMED+ +D+++G+G Sbjct: 1 MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRMVEEVLYPAMEDYCIDIVIGKG 60 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARSV+++L FTL+ ATTR G+L++PL+DRFG+ RL +Y +E+L TI++R A + Sbjct: 61 PTARSVRLDLPPFTLVGATTRAGMLSSPLRDRFGVMARLEYYNVEELTTIIERTATIFDT 120 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +A+ EIA RSRGTPRIA RLLRRVRDFA+V+ I+ A +L RL +D++G D Sbjct: 121 ELERDASIEIARRSRGTPRIANRLLRRVRDFAQVSGDMRISSSRAIESLERLQVDRLGLD 180 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 +D + + I F GGPVG+ETISA + E D IE++ EPY++Q GF+QRTPRGR++ P Sbjct: 181 HIDHKLIKGIMTKFNGGPVGLETISATIGEETDTIEEVYEPYLLQIGFLQRTPRGRVVTP 240 Query: 322 IAWQHLGIDIPHR 334 +A++H +++P++ Sbjct: 241 LAYEHFNMEVPNK 253 >gi|88856265|ref|ZP_01130925.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1] gi|88814584|gb|EAR24446.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1] Length = 343 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 148/332 (44%), Positives = 216/332 (65%), Gaps = 4/332 (1%) Query: 1 MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 M D E + + + +A+++ LRP++L+EF GQ + L++ ++AA + DH+ Sbjct: 1 MTDNEDVGANPTIESEAELAFEGALRPKSLDEFVGQQKVRGQLQLLLKAAAMQNRTADHI 60 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 L GPPGLGKTTLA +VA E R +SGP I AGDLAA+L++L +VLFIDEIHR+ Sbjct: 61 LLAGPPGLGKTTLAMIVAHESNRPLRMSSGPAIQHAGDLAAVLSSLLPGEVLFIDEIHRM 120 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 + EE+LY AMEDF++D+MVG+G A S+ ++++ FTL+ ATTR GLL NPL+DRFG Sbjct: 121 ARSAEEMLYLAMEDFRIDIMVGKGAGATSIPLDIAPFTLVGATTRSGLLPNPLRDRFGFT 180 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 L FY+ +L+ ++ R A + L + A EIA R RGTPRIA RLLRRVRD+A V H Sbjct: 181 AHLEFYDEPELEQVLVRAAVMLDLDIDRTAIAEIAGRCRGTPRIANRLLRRVRDYALVNH 240 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 +R+ AAL +D+ G D+LD + + F GGPVG+ T++ + E + +E Sbjct: 241 IPA-SRDAVRAALELYDVDERGLDRLDRAVMQTVLTRFDGGPVGLSTLAVSVGEEAETVE 299 Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 ++EP++++ G + RTPRGR+ AW+H G+ Sbjct: 300 SVVEPFLVRIGLLSRTPRGRVATRAAWEHFGM 331 >gi|15604759|ref|NP_219543.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis D/UW-3/CX] gi|166154261|ref|YP_001654379.1| Holliday junction DNA helicase B [Chlamydia trachomatis 434/Bu] gi|166155136|ref|YP_001653391.1| Holliday junction DNA helicase B [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237804390|ref|YP_002888544.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis B/TZ1A828/OT] gi|301335510|ref|ZP_07223754.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis L2tet1] gi|6685939|sp|O84044|RUVB_CHLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238687402|sp|B0B9E8|RUVB_CHLT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238687455|sp|B0BB27|RUVB_CHLTB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|3328431|gb|AAC67630.1| Holliday Junction Helicase [Chlamydia trachomatis D/UW-3/CX] gi|165930249|emb|CAP03735.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis 434/Bu] gi|165931124|emb|CAP06689.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231272690|emb|CAX09593.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis B/TZ1A828/OT] gi|296435557|gb|ADH17731.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis G/9768] gi|296437417|gb|ADH19578.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis G/11074] gi|297139916|gb|ADH96674.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis G/9301] gi|297748170|gb|ADI50716.1| RuvB [Chlamydia trachomatis D-EC] gi|297749050|gb|ADI51728.1| RuvB [Chlamydia trachomatis D-LC] Length = 334 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 138/306 (45%), Positives = 202/306 (66%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ + L +F+ AA R E H LF GPPGLGKT+LA ++A +G Sbjct: 18 LRPKKLTEFCGQKQLKERLDLFLRAAVQRNEVPGHCLFYGPPGLGKTSLAHIMANTIGKG 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 SGP + K DL LLT L++ D+ FIDEIHR+ EE LYPAMEDF++D+ + G Sbjct: 78 LVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMEDFKVDITLDSG 137 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARSV+++L+ FTL+ ATTR G+L+ PL+ RF R+++Y EDL +I+ R ++L + Sbjct: 138 PGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSILSRSSQLLAI 197 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 E EIA R+RGTPR+A LLR VRDFA++ I +A+ AL L ID +G + Sbjct: 198 EANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALAMLLIDNLGLN 257 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D++ L+++ + GGPVG++T++ + E +ED+ EP++I +G +QRT RGR+ P Sbjct: 258 EIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATP 317 Query: 322 IAWQHL 327 +A++HL Sbjct: 318 LAYEHL 323 >gi|76788753|ref|YP_327839.1| Holliday junction DNA helicase B [Chlamydia trachomatis A/HAR-13] gi|237802475|ref|YP_002887669.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis B/Jali20/OT] gi|255348403|ref|ZP_05380410.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis 70] gi|255502944|ref|ZP_05381334.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis 70s] gi|255506613|ref|ZP_05382252.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis D(s)2923] gi|97189991|sp|Q3KMY1|RUVB_CHLTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|76167283|gb|AAX50291.1| RuvB [Chlamydia trachomatis A/HAR-13] gi|231273709|emb|CAX10487.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis B/Jali20/OT] gi|289525085|emb|CBJ14556.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis Sweden2] gi|296434626|gb|ADH16804.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis E/150] gi|296438344|gb|ADH20497.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis E/11023] Length = 334 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 138/306 (45%), Positives = 202/306 (66%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ + L +F+ AA R E H LF GPPGLGKT+LA ++A +G Sbjct: 18 LRPKKLTEFCGQKQLKERLDLFLRAAVQRNEVPGHCLFYGPPGLGKTSLAHIMANTIGKG 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 SGP + K DL LLT L++ D+ FIDEIHR+ EE LYPAMEDF++D+ + G Sbjct: 78 LVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMEDFKVDITLDSG 137 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P ARSV+++L+ FTL+ ATTR G+L+ PL+ RF R+++Y EDL +I+ R ++L + Sbjct: 138 PGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSILSRSSQLLSI 197 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 E EIA R+RGTPR+A LLR VRDFA++ I +A+ AL L ID +G + Sbjct: 198 EANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALAMLLIDNLGLN 257 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 ++D++ L+++ + GGPVG++T++ + E +ED+ EP++I +G +QRT RGR+ P Sbjct: 258 EIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATP 317 Query: 322 IAWQHL 327 +A++HL Sbjct: 318 LAYEHL 323 >gi|332295727|ref|YP_004437650.1| Holliday junction ATP-dependent DNA helicase ruvB [Thermodesulfobium narugense DSM 14796] gi|332178830|gb|AEE14519.1| Holliday junction ATP-dependent DNA helicase ruvB [Thermodesulfobium narugense DSM 14796] Length = 319 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 149/310 (48%), Positives = 208/310 (67%), Gaps = 1/310 (0%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +++LRP++ +E+ GQ LK+ ++AAK R E LDH+L GPPGLGKTTLA ++A E+ Sbjct: 1 MNILRPKSFDEYIGQETIKRLLKISVDAAKKRNEMLDHILLSGPPGLGKTTLASILAYEM 60 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 G NF+ + K DL LLT+++ VLFIDEIHRL +EEILY +MED+ +D+ Sbjct: 61 GKNFKFAIASALQKPIDLVGLLTSIDKEGSVLFIDEIHRLPKNLEEILYISMEDYIVDIS 120 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 V +G A+S+++NL FTLI ATT+ GLL++PL DRFGI FY++E+L I++R A+ Sbjct: 121 VSKGVGAQSIRLNLPPFTLICATTKPGLLSSPLIDRFGIHGYFEFYQVEELTAIIKRSAQ 180 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 L + +EA+ +A RSR TPR+A +LLRRVRD+ +V K I E A +L + ID Sbjct: 181 FLELDIEEEASEFLAKRSRFTPRVANKLLRRVRDYVQVNKIKLIDVEAARKSLEIINIDD 240 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 +G + LD +YL + F GGPVGI+ IS L E + IEDL EPY+++ FIQRTPRGR Sbjct: 241 LGLNDLDRKYLRALKDIFKGGPVGIDNISQFLGESPETIEDLCEPYLLKIDFIQRTPRGR 300 Query: 318 LLMPIAWQHL 327 +L A +L Sbjct: 301 ILTENALNYL 310 >gi|216264915|ref|ZP_03436907.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 156a] gi|215981388|gb|EEC22195.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 156a] Length = 347 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 143/310 (46%), Positives = 202/310 (65%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ ++F GQV L +FI A+K R EALDHV GPPGLGKTTLA ++A E+ + Sbjct: 25 LRPKVFKDFKGQVNVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P K D+ +LT L+++ VLFIDEIHRL I+EE+L AMED++LD ++G+G Sbjct: 85 IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+V++ L +FTLI ATT+ G +T+PL RFGI R Y +L I++R + + + Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSLILNI 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA +A SRGTPRIA RLLRR+RD A+V + IT +I L L ID G D Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVITSDIVSIGLEMLRIDGEGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D L + F GGPVG++T++ + E D++ED EPY+I +GFI RT RGR Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRKATE 324 Query: 322 IAWQHLGIDI 331 A+ HL +++ Sbjct: 325 FAYLHLNLEM 334 >gi|195941762|ref|ZP_03087144.1| Holliday junction DNA helicase B [Borrelia burgdorferi 80a] Length = 347 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 144/310 (46%), Positives = 201/310 (64%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ E+F GQV L +FI A+K R EALDHV GPPGLGKTTLA ++A E+ + Sbjct: 25 LRPKVFEDFKGQVNVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P K D+ +LT L+++ VLFIDEIHRL I+EE+L AMED++LD ++G+G Sbjct: 85 IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+V++ L +FTLI ATT+ G +T+PL RFGI R Y +L I++R + + + Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSLILNI 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA +A SRGTPRIA RLLRR+RD A+V + IT +I L L ID G D Sbjct: 205 EIEADAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVITSDIVSIGLEMLRIDGEGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D L + F GGPVG++T++ + E D++ED EPY+I +GFI RT RGR Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRKATE 324 Query: 322 IAWQHLGIDI 331 A+ HL +++ Sbjct: 325 FAYLHLNLEM 334 >gi|87301991|ref|ZP_01084825.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 5701] gi|87283559|gb|EAQ75514.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 5701] Length = 359 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 161/306 (52%), Positives = 210/306 (68%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L ++ GQ E L + +EA + RAEALDHVL GPPGLGKTT+A V+A ELGV Sbjct: 48 LRPRRLSDYIGQSELKQVLGIAVEATRQRAEALDHVLLYGPPGLGKTTMALVLAEELGVR 107 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TS P + + D+ LL NL +VLFIDEIHRL+ + EE+LYPAMEDF+LDL VG+G Sbjct: 108 CRITSAPALERPRDIIGLLVNLRPNEVLFIDEIHRLNRVAEELLYPAMEDFRLDLTVGKG 167 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+ + L+ FTL+ ATTR G L++PL+DRFG+ RL FY ++DL+ IV+R A L GL Sbjct: 168 TTARTRAVPLAPFTLVGATTRAGALSSPLRDRFGLIQRLEFYTVDDLQAIVERAAGLIGL 227 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + EAA E+A R RGTPRIA RLLRRVRD A V I + AL +D G D Sbjct: 228 VLEAEAAVEVARRCRGTPRIANRLLRRVRDVASVQGEARIGPGLVAEALSLHRVDDRGLD 287 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 D R L ++ +GGGPVG++T++AGL E +E ++EP+++Q GF+QRTPRGR+ Sbjct: 288 ASDRRLLELLLGGYGGGPVGLDTLAAGLGEDPITLETVVEPFLLQLGFLQRTPRGRVATE 347 Query: 322 IAWQHL 327 A +HL Sbjct: 348 AARRHL 353 >gi|224531808|ref|ZP_03672440.1| holliday junction DNA helicase RuvB [Borrelia valaisiana VS116] gi|224511273|gb|EEF81679.1| holliday junction DNA helicase RuvB [Borrelia valaisiana VS116] Length = 347 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 142/310 (45%), Positives = 201/310 (64%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ E+F GQ L +FI A+K R EALDHV GPPGLGKTTLA ++A E+ + Sbjct: 25 LRPKVFEDFKGQANVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P K D+ +LT L+++ VLFIDEIHRL I+EE+L AMED++LD ++G+G Sbjct: 85 IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+V++ L +FTLI ATT+ G +T+PL RFGI R Y +L I++R + + + Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIRRNSVILNI 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA +A SRGTPRIA RLLRR+RD A+V + +T +I L L ID G D Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVVTSDIVSIGLEMLRIDGEGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D L + F GGPVG++T++ + E D++ED EPY+I +GFI RT RGR Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFINRTHRGRKATE 324 Query: 322 IAWQHLGIDI 331 A+ HL +++ Sbjct: 325 FAYLHLNLEM 334 >gi|224534929|ref|ZP_03675498.1| holliday junction DNA helicase RuvB [Borrelia spielmanii A14S] gi|224513869|gb|EEF84194.1| holliday junction DNA helicase RuvB [Borrelia spielmanii A14S] Length = 347 Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 142/310 (45%), Positives = 201/310 (64%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ E+F GQ L +FI A+K R EALDHV GPPGLGKTTLA ++A E+ + Sbjct: 25 LRPKVFEDFKGQANVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P K D+ +LT L+++ VLFIDEIHRL I+EE+L AMED++LD ++G+G Sbjct: 85 IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+V++ L +FTLI ATT+ G +T+PL RFGI R Y +L I++R + + + Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSIILNI 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA +A SRGTPRIA RLLRR+RD A+V + +T +I L L ID G D Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVVTSDIVAIGLEMLRIDGEGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D L + F GGPVG++T++ + E D++ED EPY+I +GFI RT RGR Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRKATE 324 Query: 322 IAWQHLGIDI 331 A+ HL +++ Sbjct: 325 FAYLHLNLEM 334 >gi|111114844|ref|YP_709462.1| Holliday junction DNA helicase RuvB [Borrelia afzelii PKo] gi|216264013|ref|ZP_03436007.1| holliday junction DNA helicase RuvB [Borrelia afzelii ACA-1] gi|123341448|sp|Q0SPE2|RUVB_BORAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|110890118|gb|ABH01286.1| Holliday junction DNA helicase [Borrelia afzelii PKo] gi|215980057|gb|EEC20879.1| holliday junction DNA helicase RuvB [Borrelia afzelii ACA-1] Length = 347 Score = 285 bits (729), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 142/310 (45%), Positives = 201/310 (64%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ E+F GQ L +FI A+K R EALDHV GPPGLGKTTLA ++A E+ + Sbjct: 25 LRPKVFEDFKGQANVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TS P K D+ +LT L+++ VLFIDEIHRL I+EE+L AMED++LD ++G+G Sbjct: 85 IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+V++ L +FTLI ATT+ G +T+PL RFGI R Y +L I++R + + + Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSIILNI 204 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++AA +A SRGTPRIA RLLRR+RD A+V + +T +I L L ID G D Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVVTSDIVAIGLEMLRIDGEGLD 264 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D L + F GGPVG++T++ + E D++ED EPY+I +GFI RT RGR Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRKATE 324 Query: 322 IAWQHLGIDI 331 A+ HL +++ Sbjct: 325 FAYLHLNLEM 334 >gi|33864671|ref|NP_896230.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 8102] gi|44888401|sp|Q7U9W7|RUVB_SYNPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|33632194|emb|CAE06650.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 8102] Length = 348 Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 152/307 (49%), Positives = 203/307 (66%), Gaps = 1/307 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+++ GQ E L + ++AA R +ALDHVL GPPGLGKTT+A V+A ELGV Sbjct: 36 LRPKRLDDYIGQDELKQVLGIAVQAALGRGDALDHVLLYGPPGLGKTTMALVLAEELGVT 95 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TS P + + D+ LL N++ RD+LFIDEIHRL+ + EE+LYPAMED +LDL VG+G Sbjct: 96 CRITSAPALERPRDIVGLLVNVQPRDLLFIDEIHRLNRVSEELLYPAMEDRRLDLTVGKG 155 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR+ + L FTL+ ATT+ G L++PL+DRFG+ RL FY EDL+ IV R A L G+ Sbjct: 156 STARTRSLELPPFTLVGATTKAGSLSSPLRDRFGLIQRLEFYGQEDLEAIVSRTADLLGV 215 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRLAIDKMGF 260 +++ A IA RGTPRIA RLLRRVRD A V I + AL +D G Sbjct: 216 SLSAGACRRIAGCCRGTPRIANRLLRRVRDVACVQGRQNQIDEGLVSQALSLHRVDHRGL 275 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 D D R L + ++ GGPVG+ET++A L E +E ++EP+++QQG + RTPRGR+L Sbjct: 276 DAGDRRLLAQLDQHHDGGPVGLETLAAALGEDPTTLESVVEPFLLQQGLLVRTPRGRMLT 335 Query: 321 PIAWQHL 327 A HL Sbjct: 336 EAARAHL 342 >gi|257068562|ref|YP_003154817.1| Holliday junction DNA helicase subunit RuvB [Brachybacterium faecium DSM 4810] gi|256559380|gb|ACU85227.1| Holliday junction DNA helicase subunit RuvB [Brachybacterium faecium DSM 4810] Length = 353 Score = 285 bits (728), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 155/322 (48%), Positives = 215/322 (66%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V E + LRPR L+EF GQ L + ++AA AR A +H+L GPPGLGKTTLA Sbjct: 20 VPPERTAEAALRPRRLDEFVGQQVVRDQLSLVLDAASARGRAPEHMLLSGPPGLGKTTLA 79 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A EL V R TSGP I AGDLAA+L++L++ +VLFIDEIHRL+ EE+LY AMED Sbjct: 80 MIIAAELSVPLRITSGPAIQHAGDLAAILSSLDEGEVLFIDEIHRLARPAEEMLYIAMED 139 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D++VG+G A S+ ++L FT + ATTR GLL PL+DRFG L+FY ++L+ + Sbjct: 140 FRVDVVVGKGVGATSIPLDLPPFTAVGATTRAGLLPAPLRDRFGFIGHLDFYGAQELREV 199 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 V R A + + + AA EI+ RSRGTPRIA RLLRRVRD+A+V + + A AL Sbjct: 200 VHRSAARLEVELDEPAAVEISTRSRGTPRIANRLLRRVRDWAQVRGSGRLDLAAAKEALR 259 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 +D+ G D+LD L+ + F GGPVG+ T++ + E + +E ++EPY++++GF+ Sbjct: 260 VYEVDERGLDRLDRAVLSALCGRFSGGPVGLSTLAVAVGEETETVETMVEPYLVREGFLL 319 Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333 RTPRGR P AW HLG++ P Sbjct: 320 RTPRGRAAAPAAWTHLGLEPPE 341 >gi|312977889|ref|ZP_07789635.1| holliday junction DNA helicase RuvB [Lactobacillus crispatus CTV-05] gi|310895196|gb|EFQ44264.1| holliday junction DNA helicase RuvB [Lactobacillus crispatus CTV-05] Length = 325 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 152/307 (49%), Positives = 203/307 (66%), Gaps = 16/307 (5%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N ++ ++SL RP+TL+++ GQ + ++I+AA+ R EALDHVL GPPGLGKTTL Sbjct: 16 NPEEQQMELSL-RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 74 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A V+A ELGV+ +STSGP I KAGDL ALL++L+ DVLFIDEIHRL+ VEE+LY AME Sbjct: 75 AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 134 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D+ +D+++GEG + +V + L FTLI ATT G L+ PL+DRFGI + +Y I++L+ Sbjct: 135 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEQ 194 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 IV R + + ++ EAA E+A RSRGTPR+A RLL+RVRDFAEV KTI+ E + AL Sbjct: 195 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 254 Query: 251 LRLAIDKMGFDQLDLRYLTMIARN--------FGGGPVGIETISAGLSEPRDAIEDLIEP 302 +L +D G DQ D R L I R FG + + I IE L EP Sbjct: 255 KQLQVDDEGLDQTDRRLLRTIDRKDIMVVLLVFGLWQLMLVKIWK-------TIESLYEP 307 Query: 303 YMIQQGF 309 Y++Q GF Sbjct: 308 YLLQHGF 314 >gi|325295514|ref|YP_004282028.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065962|gb|ADY73969.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfurobacterium thermolithotrophum DSM 11699] Length = 321 Score = 281 bits (720), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 149/307 (48%), Positives = 199/307 (64%), Gaps = 1/307 (0%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP++L EF GQ LK+ IE+AK R E LDH+LF GPPG GKTTL+ ++AREL Sbjct: 4 RPKSLNEFLGQERVKKILKIAIESAKQRKEPLDHILFYGPPGTGKTTLSMIIARELEKEI 63 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142 + S P I K GDL AL+T+L + DVLFIDEIHRL+ VEE +Y AMEDF++D++ GE Sbjct: 64 KIVSAPTIEKKGDLLALVTSLNEGDVLFIDEIHRLNRAVEETIYSAMEDFRIDIVTGE-T 122 Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202 A+S I+L +FTLI ATTR+ LLT P + RFGI RL Y +LK I + + G+ Sbjct: 123 RAKSFSIDLPKFTLIGATTRLNLLTPPFRSRFGIVCRLELYSAIELKEIAKTTSAKLGIR 182 Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262 +++ A +A SRG PRI +LL+R RD+A V + K I E A+ L+ L ID G D Sbjct: 183 LSERALEILARCSRGAPRILNQLLKRFRDYATVNNWKEIDSEKANKILMELGIDSYGLDP 242 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322 +D + L IA F GGPVG+ T++ L E D IE++ EPY+I+ G I +TPRGR + Sbjct: 243 MDRKILKTIAETFKGGPVGLTTLATVLKEDVDTIENVHEPYLIELGLIVKTPRGRKITSK 302 Query: 323 AWQHLGI 329 A + LG+ Sbjct: 303 ALKLLGL 309 >gi|194476933|ref|YP_002049112.1| Holliday junction DNA helicase RuvB [Paulinella chromatophora] gi|171191940|gb|ACB42902.1| Holliday junction DNA helicase RuvB [Paulinella chromatophora] Length = 356 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 148/319 (46%), Positives = 205/319 (64%), Gaps = 1/319 (0%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N S ++ LRP++L ++ GQ E L++ I+AA + +DHVL GP GLGKTT+ Sbjct: 35 NGSTRTLQVNSLRPKSLNDYIGQKELKQILRIAIKAAYTQEGTMDHVLLYGPAGLGKTTI 94 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 A V+A ELGV R S P I + D+ LL NLE +VLFIDEIHRL+ I EE+LY AME Sbjct: 95 ALVLAAELGVPCRIISAPAIERPRDIIGLLMNLEPNEVLFIDEIHRLNRISEELLYAAME 154 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 DF+LD+ VG+ AR I+++ FTL+ ATT G L+ L+DRFG+ RL+ Y +EDL Sbjct: 155 DFRLDISVGKSRVARIRNISINPFTLVGATTHAGALSPALRDRFGLVQRLSLYSLEDLCN 214 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREIADAA 249 I++R A + L + + A EIA R RGTPRIA RLLRR+RD + + I E+A+ Sbjct: 215 IIKRTANILLLTLDEAAVLEIAQRCRGTPRIANRLLRRIRDVTSLRDNDNYINEELANEV 274 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 L +D G D D R L + N+GGGPVG++TI+A L E +E +EP+++Q GF Sbjct: 275 LSLHQVDNRGLDANDRRILQFLIENYGGGPVGLQTIAASLGEDATILESFVEPFLMQMGF 334 Query: 310 IQRTPRGRLLMPIAWQHLG 328 ++RTPRGR++ ++HLG Sbjct: 335 LKRTPRGRIVTLEGYKHLG 353 >gi|323359953|ref|YP_004226349.1| holliday junction resolvasome, helicase subunit [Microbacterium testaceum StLB037] gi|323276324|dbj|BAJ76469.1| holliday junction resolvasome, helicase subunit [Microbacterium testaceum StLB037] Length = 347 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 156/318 (49%), Positives = 210/318 (66%), Gaps = 8/318 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L EF GQ + L++ ++AA+ + + DH+L GPPGLGKTTLA +VA E G Sbjct: 22 LRPTSLAEFVGQQKVRGQLQLLLDAARIQQRSPDHILLSGPPGLGKTTLAMIVAHESGRP 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R +SGP I AGDLAALL++L +VLFIDEIHR++ EE+LY AMEDF++D+MVG+G Sbjct: 82 LRLSSGPAIQHAGDLAALLSSLTPGEVLFIDEIHRMARSAEEMLYLAMEDFRIDIMVGKG 141 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 A S+ ++LS FTL+ ATTR GLL NPL+DRFG L +YE E+L+ +V R A + + Sbjct: 142 AGATSIPLDLSPFTLVGATTRAGLLPNPLRDRFGFTAHLEYYEPEELERVVSRSASMLDV 201 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD-------AALLRLA 254 + A EIA RSRGTPRIA RLLRRVRD+ V H + + D AAL Sbjct: 202 GLPGTARSEIARRSRGTPRIANRLLRRVRDYL-VVHGPSEGTDDGDADVRTVGAALDLYD 260 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D +G D+LD L + R F GGPVG+ T++ + E + IE ++EPY+++ GF+ RTP Sbjct: 261 VDAIGLDRLDRAVLDALVRRFRGGPVGLSTLAVAVGEEPETIESVVEPYLVRIGFMGRTP 320 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ P A+ HLG P Sbjct: 321 RGRVATPEAYDHLGAPHP 338 >gi|296122677|ref|YP_003630455.1| Holliday junction DNA helicase RuvB [Planctomyces limnophilus DSM 3776] gi|296015017|gb|ADG68256.1| Holliday junction DNA helicase RuvB [Planctomyces limnophilus DSM 3776] Length = 349 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 147/307 (47%), Positives = 194/307 (63%), Gaps = 1/307 (0%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L + GQ + L++ + A + R E L H+L GPPGLGKTTLA +A+EL V Sbjct: 41 LRPSRLADVVGQRKVVERLEIMLAATRMRTEPLSHILLDGPPGLGKTTLALALAKELDVE 100 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGP +A DL LTN +LFIDEIHRL VEE +YP MEDF++D+++GEG Sbjct: 101 CQITSGPALAAPKDLLPYLTNASGNSILFIDEIHRLPAAVEEFIYPVMEDFRVDIVLGEG 160 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR++ + L FT++ ATTR G+LT PL+DRF L FYE DL IV+R A Sbjct: 161 LNARTINMKLKPFTIVGATTRSGMLTAPLRDRFTFREHLEFYEEADLAEIVRRNAIKLRT 220 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADAALLRLAIDKMGF 260 + D +A EIA RSRGTPR + LLR RDFA V + IT EIA AL L ID +G Sbjct: 221 KIDDSSALEIARRSRGTPRKSNNLLRWARDFATVKQKEGLITNEIARQALAMLEIDVLGL 280 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 ++ D +YL I FGGGP G+ I+ ++ P D +ED +EP++++ GFIQRTPRGR++ Sbjct: 281 EEQDRKYLRTIVNVFGGGPAGLAAIAHTMNCPPDTLEDEVEPFLLRCGFIQRTPRGRIVT 340 Query: 321 PIAWQHL 327 HL Sbjct: 341 ASGLNHL 347 >gi|269219374|ref|ZP_06163228.1| holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 848 str. F0332] gi|269211167|gb|EEZ77507.1| holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 848 str. F0332] Length = 348 Score = 278 bits (712), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 161/331 (48%), Positives = 218/331 (65%), Gaps = 1/331 (0%) Query: 3 DREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 + +G++S S+ E A + LRPR L EF GQ S L + +EAA AR + DHVL G Sbjct: 10 NSKGIVSPAASESERAAEAALRPRQLSEFVGQETVRSQLSLVLEAAVARGKTPDHVLLSG 69 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 PPGLGKTTL+ ++A E+ + R TSGP I GDLAA+L++L++ DVLFIDEIHRL+ Sbjct: 70 PPGLGKTTLSMIIAAEVNGSLRLTSGPAIQNPGDLAAVLSSLQENDVLFIDEIHRLARTA 129 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 EE+LY AMEDF++D+MVG+GP A S+ + L FT++ ATTR GLL PL+DRFG L Sbjct: 130 EEMLYLAMEDFRVDVMVGKGPGATSIPLPLPPFTVVGATTRAGLLPAPLRDRFGFTGHLE 189 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +YE E+L IV R A + +AA EIA RSRGTPRIA RLLRRV+D+A+V + Sbjct: 190 YYEEEELALIVTRNAVKLQANLEADAAHEIASRSRGTPRIANRLLRRVQDWAQVRGNGVL 249 Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301 A AAL +D+ G D+LD L + F GGPVG+ T++ + E + +E + E Sbjct: 250 DLAAARAALDVFEVDRRGLDRLDRAVLEAVCVRFRGGPVGLTTLAVSVGEEPETVETVAE 309 Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY++++GF+ RTPRGR +A+ HLG+ P Sbjct: 310 PYLVREGFLLRTPRGRAATRLAFDHLGLPGP 340 >gi|123969357|ref|YP_001010215.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. AS9601] gi|166231538|sp|A2BTJ7|RUVB_PROMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|123199467|gb|ABM71108.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. AS9601] Length = 352 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 146/322 (45%), Positives = 214/322 (66%), Gaps = 4/322 (1%) Query: 9 SRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 S+N+ +E + +++L RP L+EF GQ + S+L+V I+A+ R E L+H L G PGLG Sbjct: 25 SKNIPEEKRNNNLNLARPLNLKEFIGQEQLKSSLRVAIDASIIRKEPLEHTLLYGQPGLG 84 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 KTTLA ++A EL R + P I + D+ LL L++ +VLFIDEIHRL+ + EE+LY Sbjct: 85 KTTLAFLIAHELNTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLY 144 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMEDF+LDL +G AR INL RFTLI ATT++ ++ PL+DRFGI ++ FY + Sbjct: 145 SAMEDFRLDLTMGANRGARCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEFYTCD 204 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREI 245 +LK I+ ++L L + DEA+ ++A SRGTPRIA RLLRRVRD+A+V TI+ + Sbjct: 205 ELKQIIVNFSRLINLNLEDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNTISVNL 264 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 AL ID+ G D LD YL+ + +N P+G+++I++GL + +E ++EPY+I Sbjct: 265 IKKALNSYQIDEKGLDSLDRHYLSFLNQN-NNIPIGLDSIASGLGDDSSMLEFVVEPYLI 323 Query: 306 QQGFIQRTPRGRLLMPIAWQHL 327 + GF+ RTPRGRLL + +++ Sbjct: 324 KIGFLTRTPRGRLLTALGKKYI 345 >gi|320102186|ref|YP_004177777.1| Holliday junction DNA helicase subunit RuvB [Isosphaera pallida ATCC 43644] gi|319749468|gb|ADV61228.1| Holliday junction DNA helicase subunit RuvB [Isosphaera pallida ATCC 43644] Length = 377 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 149/311 (47%), Positives = 198/311 (63%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E GQ + L + +EAA+ RAE L H+LF GPPGLGKTT A V+ ELGV Sbjct: 45 LRPRRLAEVIGQRKVAERLAIALEAARKRAEPLPHILFDGPPGLGKTTFATVLHNELGVE 104 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 TSGP + K D+ LTN + +LFIDEIHRL VEE +YP MEDF++D+++GEG Sbjct: 105 LAMTSGPALDKKMDVMPYLTNAVEGSILFIDEIHRLPKTVEEFIYPVMEDFRVDVVLGEG 164 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +AR++ + L RFT+I ATTR G+L+ PL+DRF + L FY+ DL IV A+ + Sbjct: 165 MAARTINLPLKRFTIIGATTRSGMLSGPLRDRFHLHEHLEFYDAADLARIVTVNARKLKV 224 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +AA EIA RSRGTPR+A LR VRDFA I+ +A AL ID+ G D Sbjct: 225 TLDADAAEEIARRSRGTPRLANARLRWVRDFALARANGHISLSVARDALAMQEIDQEGLD 284 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321 + D RYL + + F GGP G+E I+A ++ D + D +EPYM+++ FI RTPRGR P Sbjct: 285 RQDRRYLETLIQVFRGGPTGVEAIAATMNVSVDTLTDEVEPYMLRRRFIVRTPRGRRATP 344 Query: 322 IAWQHLGIDIP 332 ++ LG+ P Sbjct: 345 EGYRVLGLTPP 355 >gi|123967037|ref|YP_001012118.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9515] gi|166231537|sp|A2BZ00|RUVB_PROM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|123201403|gb|ABM73011.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9515] Length = 352 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 138/314 (43%), Positives = 207/314 (65%), Gaps = 2/314 (0%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 + +++++RP + +EF GQ + S+LK+ I+A+K R EAL+H L G PGLGKTTLA +++ Sbjct: 34 NKNLNIVRPTSFKEFIGQEQIKSSLKIAIDASKYRKEALEHTLLYGQPGLGKTTLALLIS 93 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 E+ R S P I + D+ LL L++ ++LFIDEIHRL+ + EE+LY AMEDF+LD Sbjct: 94 YEMNSKCRVASAPSIERPRDIVGLLLGLKEGEILFIDEIHRLNKLTEELLYSAMEDFRLD 153 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 L +G AR INL +FTLI ATT++ ++ PL+DRFG+ ++ FY ++LK I+ Sbjct: 154 LTMGANRGARCRTINLPKFTLIGATTKLASISAPLRDRFGLCHKIEFYSNDELKQIIFNF 213 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRLA 254 + L L + +A C +A SRGTPRIA RLL+RVRD+A+V I+ EI + AL Sbjct: 214 SNLINLQLDSDACCSLAKISRGTPRIALRLLKRVRDYAQVMKKTNKISIEIIEKALDSQK 273 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 ID G D +D ++L+ + N P+G+++I+AG+ E +E ++EPY+IQ GFI RTP Sbjct: 274 IDNRGLDNVDRKFLSFLKLN-NNNPIGLDSIAAGMGEESSMLEFVVEPYLIQIGFIMRTP 332 Query: 315 RGRLLMPIAWQHLG 328 RGR L + +++ Sbjct: 333 RGRKLTSLGKKYIS 346 >gi|126697145|ref|YP_001092031.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9301] gi|166231535|sp|A3PFA5|RUVB_PROM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|126544188|gb|ABO18430.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9301] Length = 352 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 143/315 (45%), Positives = 209/315 (66%), Gaps = 2/315 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 + + +++L RP TL+EF GQ + S+L++ I+A+ R E L+H+L G PGLGKTTLA + Sbjct: 32 KRNNNLNLARPLTLKEFIGQEQLKSSLRIAIDASIFRKEPLEHILLYGQPGLGKTTLAFL 91 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A EL + + P I + D+ LL L++ +VLFIDEIHRL+ + EE+LY AMEDF+ Sbjct: 92 IAHELNTKCKIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFR 151 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LDL +G R INL RFTLI ATT++ ++ PL+DRFGI ++ FY ++LK I+ Sbjct: 152 LDLTMGANKGTRCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEFYNYDELKQILL 211 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREIADAALLR 252 ++L L + DEA+ ++A SRGTPRIA RLLRRVRD+A+V TI+ + AL Sbjct: 212 NFSRLINLNLDDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNTISVNLIKKALNS 271 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 ID G D LD YL+ I +N P+G+++I+AGL + +E ++EPY+I+ GF+ R Sbjct: 272 YQIDDKGLDSLDRHYLSFINQN-NNIPIGLDSIAAGLGDDSSMLEFVVEPYLIKIGFLTR 330 Query: 313 TPRGRLLMPIAWQHL 327 TPRGRLL + +++ Sbjct: 331 TPRGRLLTALGKKYI 345 >gi|294507141|ref|YP_003571199.1| Holliday junction DNA helicase RuvB [Salinibacter ruber M8] gi|294343469|emb|CBH24247.1| Holliday junction DNA helicase RuvB [Salinibacter ruber M8] Length = 854 Score = 275 bits (703), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 132/266 (49%), Positives = 187/266 (70%) Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 TTLA ++A E+G R++SGPV+ K D+A +LTNLE+ D+LFIDEIHRLS +VEE LY Sbjct: 579 NTTLAHIIANEMGARIRTSSGPVLEKPADIAGVLTNLEEGDLLFIDEIHRLSSVVEEYLY 638 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 AMED+++D+++ +GP+AR+V+I+L FT++ ATTR GLLT PL+ RFGI R ++Y + Sbjct: 639 SAMEDYRIDIVIDQGPNARTVQIDLPPFTMVGATTRKGLLTAPLRARFGIDFRYDYYTAD 698 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 L+ I QR A++ + T + A EIA RSRGTPR+A RLLRR RDFAEV IT+ IA Sbjct: 699 LLQEITQRSARILDVETTPDGAYEIARRSRGTPRVANRLLRRTRDFAEVEGDGEITKAIA 758 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L +D+ G D +D R L + NF GGP G++ ++ + E +E++ EPY+IQ Sbjct: 759 DRALNALDVDEEGLDDMDARILLTLIDNFDGGPTGLKNLAVSVGEESGTLEEVYEPYLIQ 818 Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332 +GF++RTP+GR+ + A+ H P Sbjct: 819 EGFMERTPQGRVALQRAYDHFDRSSP 844 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 4 REGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 R L + D D+ LLRP++L+EF GQ + NL VF++AA R E LDHVL GP Sbjct: 5 RSDALKAEADRSDNDVEKLLRPQSLDEFVGQEKIKENLNVFMKAALQRGETLDHVLLSGP 64 Query: 63 PGLGK 67 PGLGK Sbjct: 65 PGLGK 69 >gi|289812351|ref|ZP_06542980.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 200 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 130/200 (65%), Positives = 164/200 (82%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L GPPGLGKTTLA +VA E+GVN Sbjct: 1 MRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 60 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 61 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 120 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL FY++ DL+ IV R A+ GL Sbjct: 121 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHMGL 180 Query: 202 AVTDEAACEIAMRSRGTPRI 221 ++D+ A E+A R+RGTPRI Sbjct: 181 EMSDDGALEVARRARGTPRI 200 >gi|78780093|ref|YP_398205.1| Holliday junction DNA helicase B [Prochlorococcus marinus str. MIT 9312] gi|97190199|sp|Q318C6|RUVB_PROM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|78713592|gb|ABB50769.1| Holliday junction DNA helicase subunit RuvB [Prochlorococcus marinus str. MIT 9312] Length = 352 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 140/311 (45%), Positives = 205/311 (65%), Gaps = 2/311 (0%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +++L RP T +EF GQ + S+L++ I+A+ R E L+H L G PGLGKTTLA ++A+E Sbjct: 36 NLNLARPITFQEFIGQEKLKSSLRIAIDASIYRKEPLEHTLLYGQPGLGKTTLAFLIAKE 95 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 + R + P I + D+ LL L++ +VLFIDEIHRL+ + EE+LY AMEDF+LDL Sbjct: 96 MNTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFRLDLT 155 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 +G AR INL RFTL+ ATT++ ++ PL+DRFGI ++ FY ++LK I+ ++ Sbjct: 156 MGANRGARCRTINLPRFTLVGATTKLASISAPLRDRFGISQKIEFYTCDELKQIIDNFSR 215 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREIADAALLRLAID 256 L V DEA+ +A SRGTPRIA RLLRRVRD+A+V I+ + AL ID Sbjct: 216 LISFNVDDEASSHLAKISRGTPRIALRLLRRVRDYAQVVKKTNVISVNLIKKALNSYQID 275 Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316 + G D +D +YL+ + +N P G+++I+AGL + +E ++EPY+IQ GF+ RTPRG Sbjct: 276 EKGLDYVDRQYLSFLNQN-KNIPTGLDSIAAGLGDDSSMLEFVVEPYLIQIGFLTRTPRG 334 Query: 317 RLLMPIAWQHL 327 RLL + +++ Sbjct: 335 RLLTALGKKYI 345 >gi|319790480|ref|YP_004152113.1| Holliday junction DNA helicase RuvB [Thermovibrio ammonificans HB-1] gi|317114982|gb|ADU97472.1| Holliday junction DNA helicase RuvB [Thermovibrio ammonificans HB-1] Length = 320 Score = 271 bits (694), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 144/307 (46%), Positives = 195/307 (63%), Gaps = 3/307 (0%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + EF GQ LKV +E+AK R E LDH+L GPPG GKTTLA ++A EL V Sbjct: 4 RPSSFAEFIGQEPVKRVLKVAVESAKRRGEPLDHILLYGPPGTGKTTLATILASELRVGL 63 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142 + S P + + GDL +LT L + D+LFIDEIHRL +EE+LY AMEDF++D++VG Sbjct: 64 KLLSAPTVERKGDLLGVLTTLNEGDILFIDEIHRLPRSIEEMLYTAMEDFRVDVIVG--- 120 Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202 R+V L FTL+ ATTR+ L+T PL+ RFGI RL Y +LK + +RGA+ L Sbjct: 121 GKRAVSFELPPFTLVGATTRLNLITPPLRSRFGIVCRLELYSPRELKEVARRGAEKLKLN 180 Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262 +T+ A +A SRGTPRI ++L+RVRD+A V + I +A L L ID+ G D+ Sbjct: 181 LTEGALELLAGCSRGTPRILNQILKRVRDYATVHGWEVIDAREVEAVLEDLGIDRYGLDR 240 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322 LD + L IA F GGPVG+ T+S L E D +E + EP++I+ G++ +TPRGR L Sbjct: 241 LDRKILETIATTFKGGPVGLSTLSTVLKEDPDTVESVHEPFLIEMGYLVKTPRGRKLTEK 300 Query: 323 AWQHLGI 329 W+ LG+ Sbjct: 301 GWKALGL 307 >gi|157414222|ref|YP_001485088.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9215] gi|172047297|sp|A8G7C1|RUVB_PROM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|157388797|gb|ABV51502.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9215] Length = 352 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 141/315 (44%), Positives = 207/315 (65%), Gaps = 2/315 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +++ +++L RP +EF GQ + S+L++ I+A+ R E L+H L G PGLGKTTLA + Sbjct: 32 KKNNNLNLARPLNFKEFIGQEQLKSSLRIAIDASIFRKEPLEHTLLYGQPGLGKTTLAFL 91 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A EL R + P I + D+ LL L++ +VLFIDEIHRL+ + EE+LY AMEDF+ Sbjct: 92 IAHELKTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFR 151 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LDL +G AR INL RFTLI ATT++ ++ PL+DRFGI ++ FY ++LK I+ Sbjct: 152 LDLTMGANRGARCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEFYTYDELKQIIV 211 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREIADAALLR 252 ++L L + DEA+ ++A SRGTPRIA RLLRRVRD+A+V I+ + AL Sbjct: 212 NFSRLINLNLDDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNNISVNLIKKALNS 271 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 ID+ G D LD YL + +N P+G+++I+AGL + +E ++EPY+I+ GF+ R Sbjct: 272 YQIDEKGLDSLDRNYLFFLNQN-KNIPIGLDSIAAGLGDDSSMLEFVVEPYLIKIGFLTR 330 Query: 313 TPRGRLLMPIAWQHL 327 TPRGRLL + +++ Sbjct: 331 TPRGRLLTALGKKYI 345 >gi|254525738|ref|ZP_05137790.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9202] gi|221537162|gb|EEE39615.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str. MIT 9202] Length = 352 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 141/315 (44%), Positives = 206/315 (65%), Gaps = 2/315 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 + + +++L RP +EF GQ + S+L++ I+A+ R E L+H L G PGLGKTTLA + Sbjct: 32 KRNNNLNLARPLNFKEFIGQEQLKSSLRIAIDASIFRKEPLEHTLLYGQPGLGKTTLAFL 91 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A EL R + P I + D+ LL L++ +VLFIDEIHRL+ + EE+LY AMEDF+ Sbjct: 92 IAHELKTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFR 151 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LDL +G AR INL RFTLI ATT++ ++ PL+DRFGI ++ FY ++LK I+ Sbjct: 152 LDLTMGANRGARCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEFYTYDELKQIIV 211 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREIADAALLR 252 ++L L + DEA+ ++A SRGTPRIA RLLRRVRD+A+V I+ + AL Sbjct: 212 NFSRLINLNLDDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNNISVNLIKKALNS 271 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 ID+ G D LD YL + +N P+G+++I+AGL + +E ++EPY+I+ GF+ R Sbjct: 272 YQIDEKGLDSLDRNYLFFLNQN-KNIPIGLDSIAAGLGDDSSMLEFVVEPYLIKIGFLTR 330 Query: 313 TPRGRLLMPIAWQHL 327 TPRGRLL + +++ Sbjct: 331 TPRGRLLTALGKKYI 345 >gi|33862171|ref|NP_893732.1| Holliday junction DNA helicase B [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|44888407|sp|Q7UZP3|RUVB_PROMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|33634389|emb|CAE20074.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 352 Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 136/314 (43%), Positives = 204/314 (64%), Gaps = 2/314 (0%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 + +++L RP + +EF GQ + S+LK+ IEA+K R EAL+H L G PGLGKTTLA +++ Sbjct: 34 NKNLNLARPNSFKEFIGQEQIKSSLKIAIEASKYRKEALEHTLLYGQPGLGKTTLALLIS 93 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 E+ + S P + + D+ LL L++ ++LFIDEIHRL+ + EE+LY AMEDF+LD Sbjct: 94 YEMNTKCKVASAPSLERPRDIVGLLLGLKEGEILFIDEIHRLNKLTEELLYSAMEDFRLD 153 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 L +G R INL +FTLI ATT++ ++ PL+DRFG+ ++ Y ++L I+ Sbjct: 154 LTMGANRGTRCRTINLPKFTLIGATTKLASISAPLRDRFGLCHKIELYSNDELHQIIFNF 213 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRLA 254 A L L + ++A +A SRGTPRIA RLL+RVRD+A+V + I+ EI + AL Sbjct: 214 ATLINLQLENDACSALAKISRGTPRIALRLLKRVRDYAQVIKNTNKISLEIIEKALNSQK 273 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 ID G D +D ++L+ + N P+G+++I+AGL E +E ++EPY+IQ GFI RTP Sbjct: 274 IDNKGLDNIDRKFLSFLNLN-NNHPIGLDSIAAGLGEESSMLEFVVEPYLIQIGFIMRTP 332 Query: 315 RGRLLMPIAWQHLG 328 RGR L + +++ Sbjct: 333 RGRKLTSLGKKYIS 346 >gi|4586354|dbj|BAA76366.1| ruvB protein [Deinococcus radiodurans] Length = 311 Score = 268 bits (685), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 147/302 (48%), Positives = 195/302 (64%), Gaps = 13/302 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL E+ GQ + L V+++AA+ R EALDH L GPPGLGKTTLA ++A ELGVN Sbjct: 11 LRPKTLTEYVGQEKLKDKLGVYLQAARGRREALDHTLLFGPPGLGKTTLAHIIAYELGVN 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP I K GDLA L +LE+ DVLFIDEIHRL + EE LYPAMEDF+LD+++G+G Sbjct: 71 IRVTSGPAIEKPGDLAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKLDIVLGQG 130 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+AR++++ L RFTL+ ATTR GL+T P++ FGI L +Y E++ T + R A+L G Sbjct: 131 PAARTIELPLPRFTLVGATTRPGLITAPMRRAFGIIEHLEYYTAEEIATNLLRDARLLGF 190 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +EA EI RSRGT RIA A T + A + A+DK+G D Sbjct: 191 GLDEEAGLEIGARSRGTMRIAKACC------GACATTPTWRAKPPSAWNAQSALDKLGLD 244 Query: 262 QLDLRYLTM-IARN----FGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT--P 314 L + RN GGPVG++T++ +SE +ED+ EPY+IQ GFI+R+ P Sbjct: 245 SAGLGTTRQEVPRNPDSPLCGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRSTWP 304 Query: 315 RG 316 RG Sbjct: 305 RG 306 >gi|238924019|ref|YP_002937535.1| Holliday junction DNA helicase B [Eubacterium rectale ATCC 33656] gi|238875694|gb|ACR75401.1| Holliday junction DNA helicase B [Eubacterium rectale ATCC 33656] Length = 255 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 123/250 (49%), Positives = 178/250 (71%) Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +G + TSGP I K G++AA+L L + D+LF+DEIHRL+ VEE+LYPAMED+ +D+M Sbjct: 1 MGTKIKVTSGPAIGKPGEMAAILNGLSEGDILFVDEIHRLNRQVEEVLYPAMEDYAIDIM 60 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 +G+G SA+S++ NL +FTL+ ATTR G+L+ PL+DRFG+ + FY +++LK I+ AK Sbjct: 61 IGKGESAKSIRFNLPKFTLVGATTRAGMLSAPLRDRFGVVNHMEFYTVDELKHIIVNSAK 120 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 + G+ + D+ A E+A RSRGTPR+A RLL+RVRDFA+V + IT ++A AL L +DK Sbjct: 121 VLGVEIDDKGAYEMARRSRGTPRLANRLLKRVRDFAQVKYDGKITYDVASFALDLLEVDK 180 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G D D L I F GGPVG++T++A + E IED+ EPY+++ GFI RTP+GR Sbjct: 181 YGLDLNDRNILLTIIDKFAGGPVGLDTLAAAIGEDAGTIEDVYEPYLVKNGFINRTPKGR 240 Query: 318 LLMPIAWQHL 327 + +A++H Sbjct: 241 VATELAFEHF 250 >gi|297516897|ref|ZP_06935283.1| Holliday junction DNA helicase RuvB [Escherichia coli OP50] Length = 217 Score = 262 bits (669), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 125/214 (58%), Positives = 161/214 (75%) Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 2 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 61 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 L FY++ DL+ IV R A+ GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H Sbjct: 62 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 121 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 TI+ +IA AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED+ Sbjct: 122 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 181 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 +EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 182 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 215 >gi|323221951|gb|EGA06341.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 213 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 128/213 (60%), Positives = 166/213 (77%), Gaps = 1/213 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212 L FY++ DL+ IV R A+ GL ++D+ A E+A Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVA 213 >gi|317508679|ref|ZP_07966334.1| Holliday junction DNA helicase RuvB [Segniliparus rugosus ATCC BAA-974] gi|316253000|gb|EFV12415.1| Holliday junction DNA helicase RuvB [Segniliparus rugosus ATCC BAA-974] Length = 313 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 139/267 (52%), Positives = 185/267 (69%), Gaps = 1/267 (0%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V + + D SL RPR L++F GQ + L++ ++ AK+R DHVLF GPPGLGKT+LA Sbjct: 23 VGEAELDASL-RPRALDDFIGQPKVREQLRLLLQGAKSRGAVPDHVLFSGPPGLGKTSLA 81 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +VA ELG R TSGP + +AGDLAALL+NL + DVLFIDEIHR++ EE+LY AMED Sbjct: 82 MIVAGELGAALRMTSGPALERAGDLAALLSNLVEGDVLFIDEIHRMARPAEEMLYLAMED 141 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F++D++VG+GP A ++ + L+ FTL+ ATTR G LTNPL+DRFG + FY E+L + Sbjct: 142 FRVDVVVGKGPGAMAIPLTLAPFTLVGATTRTGALTNPLRDRFGFVGHMEFYTPEELSQV 201 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 + R AK+ G+ + EAA EIA RSRGTPRIA RLLRRVRD+A+V + A AAL Sbjct: 202 LARSAKILGVELDAEAAIEIASRSRGTPRIANRLLRRVRDYAQVRGDGFVDLAAAQAALQ 261 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGG 278 +D++G D+LD L+ + GGG Sbjct: 262 IFDVDELGLDRLDRAVLSALVSGHGGG 288 >gi|330984326|gb|EGH82429.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. lachrymans str. M301315] Length = 330 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 135/305 (44%), Positives = 192/305 (62%), Gaps = 4/305 (1%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L +F GQ L +F+ AA+ R E +DH L GPPGLGKTTLA ++A E+ Sbjct: 19 LRPRRLAQFQGQPHLIDQLDIFLSAARLRGEMIDHCLLYGPPGLGKTTLAGIIAEEMDHE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 F ++SGP++ K D+ +LL V+FIDEIHR+ VEE+LY AMED +D++ + Sbjct: 79 FLTSSGPLLQKPADVVSLLIQPTAPTVIFIDEIHRMPTQVEELLYSAMEDQHVDILTDD- 137 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 RS++++L FTLI ATTR G L+ PL+DRFGI +RLN Y + L +V A+ GL Sbjct: 138 --RRSIRLHLEPFTLIGATTRQGSLSAPLRDRFGIHLRLNLYGLPQLGQVVLSAAQQLGL 195 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA-ALLRLAIDKMGF 260 + + A IA RSRGTPRIA + LRR+RD+ + T + A AL + +D+ G Sbjct: 196 PLKESQALIIASRSRGTPRIALKNLRRIRDYFQARGEGTGVDDTTIAEALNFMGLDENGL 255 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320 +Q D Y+ + F G PVG+ +++A L E +ED IEPY+IQ+G++ RT +GR+ M Sbjct: 256 NQADRDYINALINTFSGRPVGLSSLAAALGEDVGTLEDSIEPYLIQEGYVSRTSKGRVAM 315 Query: 321 PIAWQ 325 P A++ Sbjct: 316 PKAYK 320 >gi|213609155|ref|ZP_03368981.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 203 Score = 252 bits (643), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 124/202 (61%), Positives = 158/202 (78%), Gaps = 1/202 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTGL 201 L FY++ DL+ IV R A+ GL Sbjct: 181 LEFYQVPDLQHIVGRSARHMGL 202 >gi|32474557|ref|NP_867551.1| Holliday junction DNA helicase RuvB [Rhodopirellula baltica SH 1] gi|44888405|sp|Q7UPG4|RUVB_RHOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|32445096|emb|CAD75098.1| holliday junction DNA helicase RuvB [Rhodopirellula baltica SH 1] Length = 366 Score = 251 bits (642), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 134/319 (42%), Positives = 196/319 (61%), Gaps = 1/319 (0%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D D++L RP+ + E GQ + L++ I+AA+ R E L H+LF GPPGLGKTT A V+ Sbjct: 46 DPDVTL-RPQRMAEMVGQQDVIERLRIAIDAAQVRGEPLGHILFDGPPGLGKTTFATVIP 104 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 E+ + +G + DL LTN+ VLFIDEIHR+ +EE LY AMEDF++D Sbjct: 105 SEMKTTVQMANGAGLKAPRDLLPYLTNVSRGSVLFIDEIHRVPRAIEEYLYTAMEDFRID 164 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++GEG +AR++ ++L FTLI ATTR G+LT PL+DRF I L +Y ++L IV R Sbjct: 165 IVLGEGVNARTLNLSLEPFTLIGATTRAGMLTAPLRDRFQIREHLGWYTRKELAEIVLRN 224 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 +K + V +A IA RSR TPR+A L VRD+A+ + + +AAL + I Sbjct: 225 SKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVCEAALDMIGI 284 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D +G D+ D YL + R F GGP G++ I+ ++ D +ED +EP++++ + RT R Sbjct: 285 DHLGLDKQDRNYLDTLMRVFLGGPAGLDAIAHTMNVSSDTLEDEVEPFLLRSELLVRTRR 344 Query: 316 GRLLMPIAWQHLGIDIPHR 334 GRL P A++H+ +P R Sbjct: 345 GRLATPKAFEHMKRQMPDR 363 >gi|327543392|gb|EGF29817.1| Holliday junction DNA helicase RuvB [Rhodopirellula baltica WH47] Length = 379 Score = 251 bits (642), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 134/319 (42%), Positives = 196/319 (61%), Gaps = 1/319 (0%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D D++L RP+ + E GQ + L++ I+AA+ R E L H+LF GPPGLGKTT A V+ Sbjct: 59 DPDVTL-RPQRMAEMVGQQDVIERLRIAIDAAQVRGEPLGHILFDGPPGLGKTTFATVIP 117 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 E+ + +G + DL LTN+ VLFIDEIHR+ +EE LY AMEDF++D Sbjct: 118 SEMKTTVQMANGAGLKAPRDLLPYLTNVSRGSVLFIDEIHRVPRAIEEYLYTAMEDFRID 177 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++GEG +AR++ ++L FTLI ATTR G+LT PL+DRF I L +Y ++L IV R Sbjct: 178 IVLGEGVNARTLNLSLEPFTLIGATTRAGMLTAPLRDRFQIREHLGWYTRKELAEIVLRN 237 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 +K + V +A IA RSR TPR+A L VRD+A+ + + +AAL + I Sbjct: 238 SKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVCEAALDMIGI 297 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 D +G D+ D YL + R F GGP G++ I+ ++ D +ED +EP++++ + RT R Sbjct: 298 DHLGLDKQDRNYLDTLMRVFLGGPAGLDAIAHTMNVSSDTLEDEVEPFLLRSELLVRTRR 357 Query: 316 GRLLMPIAWQHLGIDIPHR 334 GRL P A++H+ +P R Sbjct: 358 GRLATPKAFEHMKRQMPDR 376 >gi|213580454|ref|ZP_03362280.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|289824022|ref|ZP_06543620.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 201 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 123/201 (61%), Positives = 157/201 (78%), Gaps = 1/201 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIVQRGAKLTG 200 L FY++ DL+ IV R A+ G Sbjct: 181 LEFYQVPDLQHIVGRSARHMG 201 >gi|126659996|ref|ZP_01731119.1| Holliday junction DNA helicase B [Cyanothece sp. CCY0110] gi|126618761|gb|EAZ89507.1| Holliday junction DNA helicase B [Cyanothece sp. CCY0110] Length = 307 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 123/251 (49%), Positives = 174/251 (69%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N ++++ +RP LE++ GQ S L + I+AA+ R + LDH+L GPPGLGKTT+ Sbjct: 47 NKDSDESNAQNIRPHRLEDYIGQESLKSVLNIGIKAARGRKDPLDHLLLYGPPGLGKTTM 106 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + ++A E+GVN + T+ P + + D+ LL NL+ DVLFIDEIHRL+ + EE+LYPAME Sbjct: 107 SLILAEEMGVNCKITAAPALERPRDITGLLVNLKPGDVLFIDEIHRLNRLTEELLYPAME 166 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D++LD+ +G+G +AR+ I L +FTL+ ATT+VG LT+PL+DRFG+ RL FYE E+L Sbjct: 167 DYRLDITIGKGQAARTRSIPLPKFTLVGATTKVGSLTSPLRDRFGLIERLRFYEPEELAL 226 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 I++R AK+ + +T A EIA RSRGTPRIA RLLRRVRD+ V ++I E+A +L Sbjct: 227 IIERTAKILDVTITQPGAMEIARRSRGTPRIANRLLRRVRDYQIVHKHQSINEEVASESL 286 Query: 251 LRLAIDKMGFD 261 +D G D Sbjct: 287 DFYQVDPRGLD 297 >gi|121730272|ref|ZP_01682648.1| Holliday junction DNA helicase RuvB [Vibrio cholerae V52] gi|121627974|gb|EAX60535.1| Holliday junction DNA helicase RuvB [Vibrio cholerae V52] Length = 203 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 119/193 (61%), Positives = 152/193 (78%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 +S + E+ +RP+ L ++ GQ +++FI+AA+ R EALDH+L GPPGLGK Sbjct: 11 ISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGK 70 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYP Sbjct: 71 TTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYP 130 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 AMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI RL +Y++ D Sbjct: 131 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVAD 190 Query: 188 LKTIVQRGAKLTG 200 L+ IVQR A+ G Sbjct: 191 LQHIVQRSAQCLG 203 >gi|323247806|gb|EGA31744.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323255034|gb|EGA38822.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 193 Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 120/193 (62%), Positives = 153/193 (79%), Gaps = 1/193 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEIHRLS Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+DRFGI R Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 Query: 180 LNFYEIEDLKTIV 192 L FY++ DL+ IV Sbjct: 181 LEFYQVPDLQHIV 193 >gi|190149556|ref|YP_001968081.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914687|gb|ACE60939.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 210 Score = 245 bits (625), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 116/206 (56%), Positives = 154/206 (74%) Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LYPAMED+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY Sbjct: 1 MLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFY 60 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++DL +IV+R A L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V + IT Sbjct: 61 SVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTPRIANRLLRRVRDYADVRNNGVITS 120 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 +IA AL L +D GFD +D++ L I F GGPVG++ ++A + E RD IED++EPY Sbjct: 121 DIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDVLEPY 180 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329 +IQQGF+QRTPRGR+ + HLGI Sbjct: 181 LIQQGFLQRTPRGRIATSRTYAHLGI 206 >gi|169836082|ref|ZP_02869270.1| Holliday junction DNA helicase B [candidate division TM7 single-cell isolate TM7a] Length = 272 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 124/243 (51%), Positives = 169/243 (69%) Query: 85 TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144 TSG I +AGDLA++LTNL+D D+LFIDEIHRLS VEEILY AMED++LD+++G+GP+A Sbjct: 27 TSGLAIERAGDLASILTNLQDNDILFIDEIHRLSRAVEEILYSAMEDYKLDIIIGKGPAA 86 Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204 RSV+++L +FT+I ATTR G L PL+DRFGI RL FY + + I++R A + + Sbjct: 87 RSVRLDLPKFTVIGATTRTGSLAAPLRDRFGIIHRLEFYTPDQVSNIIKRAASILKSNIH 146 Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264 D++A ++ R+R TPRIA RLL+RVRD+A+V I AL L ID++G D D Sbjct: 147 DDSARILSTRARLTPRIANRLLKRVRDYADVNGDGIIDVTTTMNALEMLEIDELGLDPAD 206 Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324 L+ I ++G PVG+ TI+A + IED EPY++Q GFI+RTPRGR + P A Sbjct: 207 RHLLSSIVESYGDNPVGLTTIAALTGDEATTIEDFYEPYLLQIGFIERTPRGRRVTPRAR 266 Query: 325 QHL 327 +HL Sbjct: 267 KHL 269 >gi|227549155|ref|ZP_03979204.1| Holliday junction DNA helicase B [Corynebacterium lipophiloflavum DSM 44291] gi|227078775|gb|EEI16738.1| Holliday junction DNA helicase B [Corynebacterium lipophiloflavum DSM 44291] Length = 247 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 113/210 (53%), Positives = 157/210 (74%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L EF GQ + L + + A+ R+ DH+L GPPGLGKTT+A ++A+ELG + Sbjct: 38 LRPKSLGEFIGQPKVREQLNLVLTGARRRSLTPDHILLSGPPGLGKTTMAMIIAQELGTS 97 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ EE+LY AMEDF++D++VG+G Sbjct: 98 LRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFRIDVIVGKG 157 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P A S+ + + FTL+ ATTR G+LT PL+DRFG ++ FY+++DL +++ R A + + Sbjct: 158 PGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDVDDLTSVITRAATILDV 217 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231 +T +AA EIA RSRGTPRIA RLLRRVRD Sbjct: 218 DITADAAVEIASRSRGTPRIANRLLRRVRD 247 >gi|148983662|ref|ZP_01816981.1| Holliday junction DNA helicase B [Streptococcus pneumoniae SP3-BS71] gi|147923809|gb|EDK74921.1| Holliday junction DNA helicase B [Streptococcus pneumoniae SP3-BS71] Length = 191 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 117/186 (62%), Positives = 142/186 (76%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL 109 R EALDHVL GPPGLGKTT+A V+A ELGVN + TSGPVI KAGDL A+L LE DVL Sbjct: 2 RDEALDHVLLFGPPGLGKTTMAFVIANELGVNLKQTSGPVIEKAGDLVAILNELEPGDVL 61 Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169 FIDEIHRL + VEE+LY AMEDF +D+M+G G +RSV + L FTLI ATTR G+L+NP Sbjct: 62 FIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNP 121 Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 L+ RFGI + +Y DL IV+R A + + +T EAA E+A+RSRGTPRIA RLL+RV Sbjct: 122 LRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRV 181 Query: 230 RDFAEV 235 RDFA++ Sbjct: 182 RDFAQI 187 >gi|71893770|ref|YP_279216.1| Holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae J] gi|72080740|ref|YP_287798.1| Holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae 7448] Length = 312 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 112/296 (37%), Positives = 182/296 (61%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + E F GQ + L++ I +++ R ++LDH+LF GPPG GKTTLA +VA L Sbjct: 1 MRPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLANIVANVLEAK 60 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + GP++ K D+ A+L N+ ++FIDEIH ++ +EE+LY AME+F +DL +G Sbjct: 61 IKYVQGPLLEKKSDVLAVLANISPDTIIFIDEIHGINKNIEELLYSAMEEFVIDLQIGVD 120 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 + +++ L +FTLI A+T++ ++ PLQ+RFG ++ Y +ED+ I++ + + L Sbjct: 121 GERKIMRMKLPQFTLIGASTKLAQISTPLQNRFGYVAKIVDYTLEDMIQIIRNSSAVLKL 180 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E IA S TPRIA LL+R+RDFA V +AK I ++I + + I G Sbjct: 181 KMNTEIIKYIASFSNNTPRIANNLLKRIRDFALVLNAKRIDKDIVNKTFDSIGIYNQGLS 240 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 Q+++ YL ++ + F G V ++ I+ L E R I ++IEP +I++ I++T RGR Sbjct: 241 QINIEYLNLLVKIFKGKSVALDVIANVLKEHRQTIINIIEPPLIEKELIEKTSRGR 296 >gi|54020198|ref|YP_115932.1| Holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae 232] gi|68715317|sp|Q600N3|RUVB_MYCH2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|148887010|sp|Q4A7W4|RUVB_MYCH7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|148887011|sp|Q4A9R6|RUVB_MYCHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|53987371|gb|AAV27572.1| holliday junction DNA helicase [Mycoplasma hyopneumoniae 232] gi|144227620|gb|AAZ44505.2| holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae J] gi|144575419|gb|AAZ53775.2| holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae 7448] gi|312601378|gb|ADQ90633.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma hyopneumoniae 168] Length = 318 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 112/296 (37%), Positives = 182/296 (61%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + E F GQ + L++ I +++ R ++LDH+LF GPPG GKTTLA +VA L Sbjct: 7 IRPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLANIVANVLEAK 66 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + GP++ K D+ A+L N+ ++FIDEIH ++ +EE+LY AME+F +DL +G Sbjct: 67 IKYVQGPLLEKKSDVLAVLANISPDTIIFIDEIHGINKNIEELLYSAMEEFVIDLQIGVD 126 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 + +++ L +FTLI A+T++ ++ PLQ+RFG ++ Y +ED+ I++ + + L Sbjct: 127 GERKIMRMKLPQFTLIGASTKLAQISTPLQNRFGYVAKIVDYTLEDMIQIIRNSSAVLKL 186 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E IA S TPRIA LL+R+RDFA V +AK I ++I + + I G Sbjct: 187 KMNTEIIKYIASFSNNTPRIANNLLKRIRDFALVLNAKRIDKDIVNKTFDSIGIYNQGLS 246 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 Q+++ YL ++ + F G V ++ I+ L E R I ++IEP +I++ I++T RGR Sbjct: 247 QINIEYLNLLVKIFKGKSVALDVIANVLKEHRQTIINIIEPPLIEKELIEKTSRGR 302 >gi|125536093|gb|EAY82581.1| hypothetical protein OsI_37802 [Oryza sativa Indica Group] Length = 443 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 113/202 (55%), Positives = 148/202 (73%) Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 M D+QLD+M+GEGP+ARS+K++L FTL+ ATTR G LT+PL+DRFGI RL FY++ DL Sbjct: 1 MVDYQLDIMIGEGPTARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADL 60 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + IV R A GL ++DE A E+A R+RGTPRIA RLLRRVRDFAEV I+ +A Sbjct: 61 QHIVSRSAGCLGLELSDEGAHEVARRARGTPRIANRLLRRVRDFAEVRANGVISGAVAAQ 120 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL L +D GFD +D + L I F GGPVG++ ++A + E R+ IED+IEP++IQQG Sbjct: 121 ALDMLNVDAEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDVIEPFLIQQG 180 Query: 309 FIQRTPRGRLLMPIAWQHLGID 330 FIQRTPRGRL A++H G++ Sbjct: 181 FIQRTPRGRLATQHAYRHFGLE 202 >gi|206895949|ref|YP_002247233.1| holliday junction DNA helicase RuvB [Coprothermobacter proteolyticus DSM 5265] gi|206738566|gb|ACI17644.1| holliday junction DNA helicase RuvB [Coprothermobacter proteolyticus DSM 5265] Length = 320 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 121/299 (40%), Positives = 177/299 (59%) Query: 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 L+EF GQ A S++ +EAAK + DH+LF GPPGLGKTTLA++VA+E+ NF T+ Sbjct: 14 LKEFVGQTTAVSSVSFSVEAAKKLGKMPDHMLFFGPPGLGKTTLARLVAQEVAANFVETT 73 Query: 87 GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 G + D+ +L + V FIDEIHR+ VEE+LY M++ + +MVG+ +AR Sbjct: 74 GNSLTNVKDVLNILLSFSRPTVFFIDEIHRIPKSVEELLYAPMDEQVIRVMVGKNKTARI 133 Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 +K +L FTLI ATT++ L+ P RF I I N+Y E++ I++ GL ++ E Sbjct: 134 IKFDLQPFTLIGATTKISFLSKPFLSRFSIKISFNYYGEEEIGKIIKEELAQQGLDISAE 193 Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266 A EIA RSRGTPR A ++ RRV ++A + H +T+ L ID+ G LD Sbjct: 194 ALREIAKRSRGTPREALQICRRVVEYAALNHLETLDVGAIIDLFNLLNIDEYGLSPLDKD 253 Query: 267 YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325 Y+ +A F GGP GI +++ L + +E ++EPY++ GF+ T RGR L W+ Sbjct: 254 YIRTLAETFKGGPSGIRVLASALGMDVETLEGVVEPYLMMLGFVTVTSRGRKLTDKGWK 312 >gi|304373059|ref|YP_003856268.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma hyorhinis HUB-1] gi|304309250|gb|ADM21730.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma hyorhinis HUB-1] Length = 317 Score = 228 bits (581), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 185/304 (60%), Gaps = 3/304 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QE+ +I RP+ E+F GQ + LKV I ++K R + LDH+LF G PG GKTTLA + Sbjct: 2 QENLEI---RPKNFEQFIGQQKLVETLKVLISSSKKRKKPLDHILFYGSPGTGKTTLANI 58 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E + GP++ K D+ ++L N+E ++FIDEIH ++ +EE+LY AME+F Sbjct: 59 LATETQSKIKYIQGPLLEKKSDILSMLANVEKGHIIFIDEIHSINKNIEELLYSAMEEFV 118 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+ +G ++ +++ L FTL+ A+T++ ++ PL++RFG+ ++ Y E++K I+Q Sbjct: 119 IDIQIGVEGESKIMRMKLPEFTLVGASTKISSISLPLKNRFGLTAKIYEYTSEEMKKIIQ 178 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 + + + +++E + + TPRIA LL+R+RDFA V KTI+++I D + Sbjct: 179 NSSNILNIEISEELVHYVVDFTNKTPRIANNLLKRIRDFAIVEDTKTISKDIIDKTFNGI 238 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 I G + ++ YL ++A F V ++ I + E ++ I + IEP ++Q I++T Sbjct: 239 GIFLNGLNLQNIEYLNLLANVFKRKTVSLDVICGIMKETKENIINNIEPILLQLELIEKT 298 Query: 314 PRGR 317 PRGR Sbjct: 299 PRGR 302 >gi|330723323|gb|AEC45693.1| Holliday junction DNA helicase RuvB [Mycoplasma hyorhinis MCLD] Length = 317 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 185/304 (60%), Gaps = 3/304 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QE+ +I RP+ E+F GQ + LKV I +++ R + LDH+LF G PG GKTTLA + Sbjct: 2 QENLEI---RPKNFEQFIGQQKLVETLKVLISSSRKRKKPLDHILFYGSPGTGKTTLANI 58 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A E + GP++ K D+ ++L N+E ++FIDEIH ++ +EE+LY AME+F Sbjct: 59 LATETQSKIKYIQGPLLEKKSDILSMLANVEKGHIIFIDEIHSINKNIEELLYSAMEEFV 118 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +D+ +G ++ +++ L FTL+ A+T++ ++ PL++RFG+ ++ Y E++K I+Q Sbjct: 119 IDIQIGVEGESKIMRMKLPEFTLVGASTKISSISLPLKNRFGLTAKIYEYTSEEMKKIIQ 178 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 + + + +++E + + TPRIA LL+R+RDFA V KTI+++I D + Sbjct: 179 NSSNILNIEISEELVHYVVDFTNKTPRIANNLLKRIRDFAIVEDTKTISKDIIDKTFNGI 238 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 I G + ++ YL ++A F V ++ I + E ++ I + IEP ++Q I++T Sbjct: 239 GIFLNGLNLQNIEYLNLLANVFKRKTVSLDVICGIMKETKENIINNIEPILLQLELIEKT 298 Query: 314 PRGR 317 PRGR Sbjct: 299 PRGR 302 >gi|313678673|ref|YP_004056413.1| Holliday junction DNA helicase RuvB [Mycoplasma bovis PG45] gi|312950367|gb|ADR24962.1| Holliday junction DNA helicase RuvB [Mycoplasma bovis PG45] Length = 320 Score = 225 bits (574), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 110/297 (37%), Positives = 178/297 (59%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LLRP + +EF GQ + +K I+ + R E LDH+LF GPPG GKTTLA ++ EL Sbjct: 5 LLRPTSFKEFIGQKKLIVTVKAMIDGSLHRNEVLDHILFYGPPGTGKTTLASLIGNELNK 64 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 G ++ K D+ ++ N+ + D++FIDEIH ++ VEEI+Y AMEDF++D+++G Sbjct: 65 KVHYLQGALLEKKSDVLSVFANVNENDIVFIDEIHSINKSVEEIIYNAMEDFKIDIIIGP 124 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 +++ +++NL FTLI ATT++ LL+ P +DRFG+ RL+ Y E++ I+Q K Sbjct: 125 EGNSKVMRMNLKPFTLIGATTKLNLLSQPFKDRFGLLARLSQYSNEEIVKILQNSKKKLK 184 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + +E +A SR TPRIA LL+R DF+ + I + L + +G Sbjct: 185 VETDNEVLMLLAKYSRNTPRIANHLLKRAYDFSLKNNQNIIDAKTTYLTFKHLELFDLGL 244 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 ++ + YL++++ +F V I+ IS L+ +D + + IEPY++ I+++PRGR Sbjct: 245 NKEHIEYLSLLSNSFYDKFVSIDAISGILNMNKDNLINDIEPYLLYLQLIEKSPRGR 301 >gi|315282448|ref|ZP_07870860.1| holliday junction DNA helicase RuvB [Listeria marthii FSL S4-120] gi|313613911|gb|EFR87643.1| holliday junction DNA helicase RuvB [Listeria marthii FSL S4-120] Length = 218 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 112/209 (53%), Positives = 149/209 (71%) Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 +EEILYPAMED+ LD+++G GP+ARSV+++L FTLI ATTR GLL+ PL+DRFG+ L Sbjct: 4 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 63 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 FY E L IV R + + + + A EIA RSRGTPRIA RLL+RVRDFA+V T Sbjct: 64 EFYTEEQLTEIVLRTSSILDTKIDELGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 123 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 +T ++A AL L +D G D +D + L I ++F GGPVG++TI+A + E R+ IED+ Sbjct: 124 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 183 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 EPY++Q GF+QRTPRGR+ A+ HLGI Sbjct: 184 EPYLLQIGFLQRTPRGRIATETAYNHLGI 212 >gi|207093068|ref|ZP_03240855.1| Holliday junction DNA helicase B [Helicobacter pylori HPKX_438_AG0C1] Length = 209 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 101/189 (53%), Positives = 145/189 (76%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP E+F GQ + SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+ N Sbjct: 21 LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS +EE+LYPAMEDF+LD+++G G Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 P+A+++KI+L FTLI ATTR G+L+NPL+DRFG+ R+ FY +L I+++ A Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQ 200 Query: 202 AVTDEAACE 210 + +E+A E Sbjct: 201 DIKEESADE 209 >gi|291320152|ref|YP_003515413.1| Holliday junction DNA helicase RuvB [Mycoplasma agalactiae] gi|290752484|emb|CBH40456.1| Holliday junction DNA helicase ruvB [Mycoplasma agalactiae] Length = 320 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 110/297 (37%), Positives = 175/297 (58%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LLRP +EF GQ + LK I+ + R E LDH+LF GPPG GKTTLA ++ EL Sbjct: 5 LLRPTCFKEFIGQKKLIITLKAMIDGSLHRNETLDHILFYGPPGTGKTTLASLIGNELNK 64 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 G ++ K D+ ++ N+ + D++FIDEIH ++ VEEI+Y AMEDF++DL++G Sbjct: 65 KVHYLQGALLEKKSDVLSVFANVNENDIVFIDEIHSINKAVEEIIYNAMEDFKIDLIIGP 124 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 +++ +++NL FTLI ATT++ LL+ P +DRFG+ RL+ Y E++ I+Q K Sbjct: 125 EGNSKVMRMNLKPFTLIGATTKLNLLSQPFKDRFGLLARLSQYSNEEIVKILQNSKKKLK 184 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + + +A SR TPRIA LL+R DF+ + I + L + +G Sbjct: 185 VETDSDVLMLLAKYSRNTPRIANHLLKRAYDFSLKNNQSIIDAKTTYLTFKHLELFDLGL 244 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 ++ + YL++++ +F V I+ IS L+ ++ + IEPY++ I+++PRGR Sbjct: 245 NKEHIEYLSLLSNSFYDKFVSIDAISGILNMSKENLISDIEPYLLYLQLIEKSPRGR 301 >gi|148377490|ref|YP_001256366.1| Holliday junction DNA helicase B [Mycoplasma agalactiae PG2] gi|148291536|emb|CAL58922.1| Holliday junction DNA helicase ruvB [Mycoplasma agalactiae PG2] Length = 320 Score = 221 bits (564), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 109/297 (36%), Positives = 177/297 (59%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LLRP + +EF GQ + LK I+ + R E LDH+LF GPPG GKTTLA ++ EL Sbjct: 5 LLRPTSFKEFIGQKKLIITLKAMIDGSLHRNEVLDHILFYGPPGTGKTTLASLIGNELNK 64 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 G ++ K D+ ++ N+ + D++FIDEIH ++ VEEI+Y AMEDF++DL++G Sbjct: 65 RVHYLQGALLEKKSDVLSVFANVNENDIVFIDEIHSINRAVEEIIYNAMEDFKIDLIIGP 124 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 +++ +++NL FTL+ ATT++ LL+ P +DRFG+ RL+ Y E++ I+Q K Sbjct: 125 EGNSKVMRMNLKPFTLVGATTKLNLLSQPFKDRFGLLARLSQYSNEEIVKILQNSKKKLK 184 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + + +A SR TPRIA LL+R DF+ + I + L + +G Sbjct: 185 VETDSDVLMLLAKYSRNTPRIANHLLKRAYDFSLKNNQSIIDAKTTYLTFKHLELFDLGL 244 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 ++ + YL++++ +F V I+ IS L+ ++ + + IEPY++ I+++PRGR Sbjct: 245 NKEHIEYLSLLSNSFYDKFVSIDAISGILNMSKENLINDIEPYLLYLQLIEKSPRGR 301 >gi|144900758|emb|CAM77622.1| Holliday junction DNA helicase RuvB [Magnetospirillum gryphiswaldense MSR-1] Length = 195 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 99/178 (55%), Positives = 137/178 (76%) Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 ++ ATTR GLLT PL++RFGIP R+N+Y ++L+ IV RGA++ G VT + A E+A R+ Sbjct: 1 MVGATTRSGLLTTPLRERFGIPCRMNYYXPQELELIVARGARVLGFDVTPDGAAEVARRA 60 Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275 RGTPR+AGRLLRRVRDFA VA + ++AD AL RL +D+MG D +D RYL IA N+ Sbjct: 61 RGTPRVAGRLLRRVRDFAAVAGQSPVDAQVADRALTRLEVDQMGLDAMDRRYLKCIADNY 120 Query: 276 GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 GGGPVG++T++A LSE RD +E+++EPY++QQG IQRTPRGR+L ++H+G++ P Sbjct: 121 GGGPVGVDTLAAALSESRDTLEEVVEPYLLQQGLIQRTPRGRMLSAAGFKHIGLNPPS 178 >gi|325973631|ref|YP_004250695.1| holliday junction ATP-dependent DNA helicase, RuvB [Mycoplasma suis str. Illinois] gi|325990083|ref|YP_004249782.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma suis KI3806] gi|323575168|emb|CBZ40830.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma suis] gi|323652233|gb|ADX98315.1| holliday junction ATP-dependent DNA helicase, RuvB [Mycoplasma suis str. Illinois] Length = 319 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 116/315 (36%), Positives = 182/315 (57%), Gaps = 10/315 (3%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 + D+ RP L EF G+ E +L++ IE AK + L+H L GPPG+GKT+LAQ++A Sbjct: 2 NLDLLHTRPTNLSEFIGKPEIVKSLRIGIEVAKKLNKPLEHTLLYGPPGVGKTSLAQIIA 61 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 E+ VN + I DL +L +L D DVLFIDEIH L + E+LY A+ED LD Sbjct: 62 NEMEVNIKIVPSTNIQTLPDLIGILNSLNDFDVLFIDEIHSLKLEYSEMLYSALEDNVLD 121 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 L++G+ +++++++NL +FTLIAATT +G L L++RFG ++ Y E+L +++R Sbjct: 122 LLIGKNYNSKTIRVNLPKFTLIAATTNLGALPKALEERFGYVFFIDCYTEEELIVLIKRV 181 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 K+ L ++++ I SRG PR A R+LRRV D+ + + I I + + Sbjct: 182 TKMWNLELSEKEILTIVYNSRGIPRNANRILRRVLDYKTINNECEIQEIIKECGFIY--- 238 Query: 256 DKMGFDQLDLRYLTMIAR--NFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 MG + D++YL + NF GI++I G + + IEPY++ +G+I +T Sbjct: 239 --MGLTETDIKYLNFLKESLNFTS---GIKSIVQGTNIDESTLIKKIEPYLVSKGYISKT 293 Query: 314 PRGRLLMPIAWQHLG 328 +GR+L + LG Sbjct: 294 NKGRILTDSGEKILG 308 >gi|308126387|ref|ZP_07663742.1| holliday junction ATP-dependent DNA helicase RuvB [Vibrio parahaemolyticus AQ4037] gi|308109586|gb|EFO47126.1| holliday junction ATP-dependent DNA helicase RuvB [Vibrio parahaemolyticus AQ4037] Length = 201 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 102/153 (66%), Positives = 128/153 (83%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L ++ GQ +++FI+AA+ R+EALDH+L GPPGLGKTTLA +VA E+ VN Sbjct: 25 IRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANEMEVN 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG Sbjct: 85 IRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEG 144 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174 P+ARS+KI+L FTLI ATTR G LT+PL+DR Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRL 177 >gi|294155533|ref|YP_003559917.1| Holliday junction DNA helicase [Mycoplasma crocodyli MP145] gi|291600218|gb|ADE19714.1| Holliday junction DNA helicase [Mycoplasma crocodyli MP145] Length = 314 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 108/296 (36%), Positives = 173/296 (58%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +EF GQ + LK I +A + LDH+LF GPPG GKT+LA ++A E Sbjct: 5 LRPSNFKEFIGQNKIKETLKAMIISANTQKRVLDHILFYGPPGTGKTSLATIIANEQNAI 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 I K DL ++L+ + D+LFIDE+H L+ ++EE+LY AMEDF D+++G Sbjct: 65 IHYVQASNIDKKSDLVSILSTINHGDILFIDEVHGLNKVIEELLYNAMEDFVFDILIGTE 124 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +A+++++ + FTLIAATT++ L++ PL+DRFG +LN YE+ +L I++ AK + Sbjct: 125 ENAKTIRMKIKPFTLIAATTKLNLISQPLKDRFGFIAKLNNYELIELVRILKNSAKALKI 184 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + + A I SR TPRIA LLRRV DF + + I +I + L + + G Sbjct: 185 EIGESEANLICSYSRQTPRIANNLLRRVNDFKIANNKELIDFKIIEKTFDNLELYEFGLT 244 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 + + YL ++ +F ++T+ L+ +D + + +EP ++ G I+++ RGR Sbjct: 245 KDHIEYLDLLRNSFDEKWASLDTMCGLLNLEKDNLLNEVEPILLYYGLIKKSSRGR 300 >gi|240047399|ref|YP_002960787.1| Holliday junction DNA helicase RuvB [Mycoplasma conjunctivae HRC/581] gi|239984971|emb|CAT04964.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma conjunctivae] Length = 321 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 110/304 (36%), Positives = 175/304 (57%), Gaps = 3/304 (0%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 QE+ +I RP + E F GQ + LKV IE+++ R + LDHVLF GPPG GKTTLA + Sbjct: 2 QENLEI---RPTSFEGFIGQKKIVQTLKVLIESSQKRKKTLDHVLFHGPPGTGKTTLANI 58 Query: 74 VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A + + GP++ K D+ A+L N+ V+FIDEIH ++ +EE+LY AME+F Sbjct: 59 IASMVNTKIKYVQGPLLEKKADVLAMLANITKDSVIFIDEIHGINKNIEELLYSAMEEFV 118 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 +DL +G + +++ L FTLI A+T++ ++ PLQ+RFG ++ Y ED++ I+ Sbjct: 119 IDLQIGVDGENKIMRMKLPNFTLIGASTKLSQISTPLQNRFGFIAKITEYSNEDMRQIIY 178 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 AK + + I + TPRIA LL+R+RDFA V + + I I + + Sbjct: 179 NSAKKLHINLGASEIDYIVNFTNKTPRIANNLLKRIRDFALVQNIEKIDINIINKTFDSI 238 Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313 + K G + + YL ++ F V ++ + L E R I +IEP ++++ +I++T Sbjct: 239 GVYKNGLSETSVEYLKILHYIFKDKSVALDVLVGILKESRQTIIHIIEPLLVEKFYIEKT 298 Query: 314 PRGR 317 RGR Sbjct: 299 IRGR 302 >gi|328471548|gb|EGF42429.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus MTCC 5462] Length = 216 Score = 215 bits (547), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 101/205 (49%), Positives = 142/205 (69%) Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDF +D++VG+GP+A V L FTLI ATTR G+L+ PL+DRFGI + +Y +DL Sbjct: 1 MEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGISEHMAYYSPDDL 60 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 IV+R A + +A+ E A EIA RSRGTPR+A RLL+R+RDFAEVA + + D Sbjct: 61 SEIVKRSANVFNMAIDAEGAYEIARRSRGTPRVANRLLKRIRDFAEVAGKSPVDLAMVDH 120 Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 AL +L +D G DQ+D + LT + R++ GGPVG+ TI+A + E IE++ EPY++Q G Sbjct: 121 ALDQLQVDAQGLDQIDRKLLTFMIRDYQGGPVGLSTIAANIGEEMATIEEMYEPYLLQIG 180 Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333 F++RTPRGR++ P + H+GI +P Sbjct: 181 FLKRTPRGRMVTPAGFAHMGITMPQ 205 >gi|299782996|gb|ADJ40994.1| Holliday junction DNA helicase RuvB [Lactobacillus fermentum CECT 5716] Length = 213 Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 103/206 (50%), Positives = 141/206 (68%) Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LY AMEDF +D++VGEGP+A V L FTLI ATTR GLL PL+DRFGI R+++Y Sbjct: 1 MLYSAMEDFYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGLLAAPLRDRFGIVARMDYY 60 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 +L I+ R A + + ++ A E+A+RSRGTPRIA RLL+RVRDFA+V I Sbjct: 61 TTTELSQIIDRSATIFNTKIQEDGAHELALRSRGTPRIANRLLKRVRDFAQVGGQAAIDP 120 Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 D AL LA+D G D++D + LT + ++ GGPVGI TI+A + E + IE++ EPY Sbjct: 121 ATVDRALDLLAVDDQGLDEIDRKLLTTMIEHYHGGPVGIRTIAANIGEEVNTIEEMYEPY 180 Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329 ++Q GF+ RTPRGR++ P A++HL I Sbjct: 181 LLQIGFLMRTPRGRVVTPAAYEHLKI 206 >gi|15829129|ref|NP_326489.1| Holliday junction DNA helicase B [Mycoplasma pulmonis UAB CTIP] gi|20140190|sp|Q98PR1|RUVB_MYCPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|14090073|emb|CAC13831.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Mycoplasma pulmonis] Length = 315 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 98/296 (33%), Positives = 178/296 (60%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +F GQ + LKV I +A+ + LDH+LF G PG GKT+LA +++ L Sbjct: 7 IRPKNFSDFVGQNKLKKLLKVMISSAQVQNRPLDHILFYGNPGTGKTSLASIISNSLNSR 66 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + G ++ K D+ L ++E+ D++F+DEIH ++ +EE+LY +EDF +D+++G Sbjct: 67 IKYAQGNLLDKKTDILTLFASVEENDIIFVDEIHAINKNIEELLYSILEDFVVDIVIGVE 126 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +++ +++NL FT I ATT++ ++ PL+DRFG+ +++ Y++ED++ I++ +K + Sbjct: 127 SNSKIMRLNLKPFTFIGATTQINRISKPLRDRFGLIGQISNYQVEDIEKIIKNNSKKLNI 186 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++A IA+ S+ PR+A LL+R +DF + I ++ + L +L I + G + Sbjct: 187 QIDEKATNLIALYSQNIPRLAINLLKRTKDFCIYEECQIIDYKLVNKTLKQLGIYENGLN 246 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 + ++YL ++ F V ++ I LS ++ I IEP +I I +TPRGR Sbjct: 247 ESQVKYLRSLSETFYKKAVSLDLIVGFLSLQKETIISEIEPLLISNNLIVKTPRGR 302 >gi|172046793|sp|Q4A6N6|RUVB_MYCS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|144574985|gb|AAZ43585.2| holliday junction DNA helicase RuvB [Mycoplasma synoviae 53] Length = 316 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 106/301 (35%), Positives = 171/301 (56%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + + RP E F GQ S LK IE++K + + L+H+LF G PG+GKT+LA ++A E Sbjct: 1 MQITRPHNFETFIGQKNLISTLKAMIESSKKQNKVLNHILFYGMPGMGKTSLAGIIANET 60 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 G + K DL +L+ + + D++FIDEIH ++ + E LY AMEDF DL++ Sbjct: 61 KNKIHFIQGSNLEKKSDLINILSVINENDIVFIDEIHSINKNIIEFLYSAMEDFVFDLII 120 Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198 G +A+++++ + FTLI ATT++ + P +DRFG R Y ED+K I++ KL Sbjct: 121 GTESNAKALRMKIKPFTLIGATTKINEMAQPFKDRFGYIARFVSYNAEDMKQIIRNSIKL 180 Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258 + + +E +A SR TPRI LL R+ DFA V +A I ++I L + + Sbjct: 181 LNINLGEEHFDFVASYSRNTPRIVNHLLERINDFAIVKNAGIIDKKIIKKTFKSLDLYEY 240 Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318 G + + YL ++ F PV ++T+S L P++ + + IEP ++ I +T +GR+ Sbjct: 241 GLTKDHVEYLQLLRDGFDSKPVSLDTLSGVLIHPKEVLVNEIEPILLYLKLITKTSKGRM 300 Query: 319 L 319 + Sbjct: 301 I 301 >gi|331703542|ref|YP_004400229.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802097|emb|CBW54251.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 307 Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 106/297 (35%), Positives = 179/297 (60%), Gaps = 3/297 (1%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 + RP EE+ GQ +NLKVFI++AK + + +DH+ GP G GKT+LA ++A++L Sbjct: 1 MFRPEKWEEYIGQTNILNNLKVFIKSAKKQNKVVDHIFIYGPSGYGKTSLAYLLAKQLKT 60 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 N R +GP + KA D+ ++LT+++++DVLFIDEIH ++ V EI+YP +E+ +L++++G+ Sbjct: 61 NIRILNGPNLQKASDIISILTSIKEKDVLFIDEIHAVNKEVLEIIYPVLEENKLNIIIGK 120 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 +++ V I+L +FT+I ATT + + PL +RF I + Y +ED+ IV+ Sbjct: 121 DYNSKVVNIDLPKFTIICATTEINKIPLPLLNRFPINFTMQEYNLEDMSKIVELYCNKFQ 180 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + + +A R TPRIA L++R++D + K I L +L I ++G Sbjct: 181 IKLDQNIYLYLASFCRKTPRIAINLIKRIKDHIICDNPKIIDINYIKKVLEKLEIYELGL 240 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 ++ YL MIA+N +G++ I+ L+ I + IEP++I++ I RT +GR Sbjct: 241 TITEINYLKMIAKN---KRIGLDNIAHLLNTTPLIIANNIEPFLIRESLIIRTIKGR 294 >gi|256384432|gb|ACU79002.1| holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma mycoides subsp. capri str. GM12] gi|256385264|gb|ACU79833.1| holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma mycoides subsp. capri str. GM12] gi|296455986|gb|ADH22221.1| holliday junction ATP-dependent DNA helicase RuvB [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 307 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 106/297 (35%), Positives = 179/297 (60%), Gaps = 3/297 (1%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 + RP EE+ GQ NLKVFI++AK + + +DH+ GP G GKT+LA ++A++L Sbjct: 1 MFRPEKWEEYIGQTNILDNLKVFIKSAKKQNKVVDHIFIYGPSGYGKTSLAYLLAKQLKT 60 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 N R +GP + KA D+ ++LT+++++DVLFIDEIH ++ V EI+YP +E+ +L++++G+ Sbjct: 61 NIRILNGPNLQKASDIISILTSIKEKDVLFIDEIHAVNKEVLEIIYPVLEENKLNIIIGK 120 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 +++ V I+L +FT+I ATT + + PL +RF I + Y +ED+ IV+ Sbjct: 121 DYNSKVVNIDLPKFTIICATTEINKIPLPLLNRFPINFTMQEYNLEDMSKIVELYCNKFQ 180 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + + + +A R TPRIA L++R++D + K I L +L I ++G Sbjct: 181 IKLDQDIYLYLASFCRKTPRIAINLIKRIKDHIICDNPKLIDINYIKKVLEKLEIYELGL 240 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 ++ YL MIA+N +G++ I+ L+ I + IEP++I++ I RT +GR Sbjct: 241 TITEINYLKMIAKN---KRIGLDNIAHLLNTTPLIIANNIEPFLIRESLIIRTIKGR 294 >gi|269114959|ref|YP_003302722.1| holliday junction DNA helicase ruvB [Mycoplasma hominis] gi|268322584|emb|CAX37319.1| Holliday junction DNA helicase ruvB [Mycoplasma hominis ATCC 23114] Length = 317 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 104/303 (34%), Positives = 175/303 (57%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84 + +EF GQ + S +K+ IE+AK + + +DH+LF GPPGLGKTTLA+++++E N Sbjct: 8 NSFDEFVGQEKLISTIKIIIESAKVQKKQIDHLLFYGPPGLGKTTLAKIISKETKSNIVY 67 Query: 85 TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144 GP+I K D+ + +++ D D++FIDEIH ++ +EE+ Y A+E+ +D+ +G Sbjct: 68 VQGPLIEKKSDVLTIFSSINDNDIIFIDEIHGINKNIEELFYSALEEGTIDVALGVDGDK 127 Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204 + +++ L +F LIAATT++ LL+ PL+DRFG +L+ Y ++ I+ A + + Sbjct: 128 KIMRMKLKKFCLIAATTKINLLSKPLKDRFGYIGKLSDYSDLEIAKIIFNSATKNKIKIK 187 Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264 ++A IA+ SR TPR+A LL+RV DFA I E A L I G Sbjct: 188 NDAINFIAIHSRQTPRVANTLLKRVNDFAIYYKIDLIDLETVKKAFSYLGIYLYGLYSPQ 247 Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324 + YL + + F ++ IS+ + + + I + IEP ++ I+++PRGR + Sbjct: 248 IEYLKTLHKVFNDKFSSLDAISSIIKDDKYTILNDIEPILLIYKLIEKSPRGRKITNNGI 307 Query: 325 QHL 327 ++L Sbjct: 308 EYL 310 >gi|31544807|ref|NP_853385.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma gallisepticum str. R(low)] gi|31541653|gb|AAP56953.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma gallisepticum str. R(low)] gi|284930881|gb|ADC30820.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma gallisepticum str. R(high)] Length = 306 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 115/313 (36%), Positives = 183/313 (58%), Gaps = 14/313 (4%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + L RP +EF G+ E L FI A+ ++ +ALDHVLF GPPG+GKT+LAQ++A EL Sbjct: 1 MKLARPNNFDEFIGKNELKQKLLTFINASISQNKALDHVLFYGPPGVGKTSLAQIIANEL 60 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 + I K DL + L DVLFIDEIH LS + E+L+P MED+ +D+++ Sbjct: 61 KSKIKILQASQIQKPADLLNAFSLLSKNDVLFIDEIHSLSPTIMELLFPIMEDYVVDILI 120 Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198 G+ +++ ++ L FTLI ATT G + +PL++RFGI ++L++Y+ +++ I++ Sbjct: 121 GKEFNSKFTRMKLPPFTLIGATTMYGRIIDPLEERFGILLQLDYYQDDEIFEIIRSINAK 180 Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL-RLAIDK 257 + +T + +IA S+GTPR A R+ +RV DF K +EI ++L +L I + Sbjct: 181 EKIKLTKDEMVQIAEHSKGTPRNALRIYKRVMDF------KLFDQEITIKSILEKLNIYQ 234 Query: 258 MGFDQLDLRYLTMIARNFGGGP---VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 G LDL YL ++F P +G++++S IE IEPY+++ I++T Sbjct: 235 YGLSNLDLEYL----KSFDDNPKLYLGLKSLSLISGIDCFTIESKIEPYLLKMNLIKKTS 290 Query: 315 RGRLLMPIAWQHL 327 +GR + A Q+ Sbjct: 291 KGRQITQKAIQYF 303 >gi|313665318|ref|YP_004047189.1| holliday junction DNA helicase RuvB C-terminal domain protein [Mycoplasma leachii PG50] gi|312949948|gb|ADR24544.1| holliday junction DNA helicase RuvB C-terminal domain protein [Mycoplasma leachii PG50] Length = 307 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 178/297 (59%), Gaps = 3/297 (1%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 + RP EE+ GQ NLKVFI++AK + + +DH+ GP G GKT+LA ++A++L Sbjct: 1 MFRPEKWEEYIGQNNILDNLKVFIKSAKKQNKVVDHIFIYGPSGYGKTSLAYLLAKQLKT 60 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 N R +G + KA D+ ++LT+++++DVLFIDEIH ++ + EI+YP +E+ +L++++G+ Sbjct: 61 NIRILNGSNLQKASDIISILTSIKEKDVLFIDEIHAVNKEILEIIYPVLEENKLNIIIGK 120 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 +++ V I+L +FT++ ATT + + PL +RF I + Y +ED+ IV+ Sbjct: 121 DYNSKVVNIDLPKFTIVCATTEINKMPIPLLNRFPINFTMQEYNLEDMSKIVELYCNKFQ 180 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + + + +A R TPRIA L++R++D + K I L +L I ++G Sbjct: 181 IKLDQDIYLYLASFCRKTPRIAINLIKRIKDHIICDNPKKIDIHYIKKVLEKLEIYELGL 240 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 ++ YL MIA+N +G++ I+ L+ I + IEP++I++ I RT +GR Sbjct: 241 TVTEINYLKMIAKN---KRIGLDNIAHLLNTTPLIIANNIEPFLIRENLIIRTIKGR 294 >gi|284931637|gb|ADC31575.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma gallisepticum str. F] Length = 306 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 114/313 (36%), Positives = 183/313 (58%), Gaps = 14/313 (4%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + L RP +EF G+ E L FI A+ ++ +ALDHVLF GPPG+GKT+LAQ++A EL Sbjct: 1 MKLARPNNFDEFIGKNELKQKLLTFINASISQNKALDHVLFYGPPGVGKTSLAQIIANEL 60 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 + I K DL + L DVLFIDEIH LS + E+L+P MED+ +D+++ Sbjct: 61 KSKIKILQASQIQKPADLLNAFSLLSKNDVLFIDEIHSLSPTIMELLFPIMEDYVVDILI 120 Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198 G+ +++ ++ L FTLI ATT G + +PL++RFGI ++L++Y+ +++ I++ Sbjct: 121 GKEFNSKFTRMKLPPFTLIGATTMYGRIIDPLEERFGILLQLDYYQDDEIFEIIRSINVK 180 Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL-RLAIDK 257 + +T + +IA S+GTPR A R+ +RV DF K +EI ++L +L I + Sbjct: 181 EKIELTKDEMVQIAEHSKGTPRNALRIYKRVMDF------KLFDQEITIKSILEKLNIYQ 234 Query: 258 MGFDQLDLRYLTMIARNFGGGP---VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 G LDL YL ++F P +G++++S IE IEPY+++ I++T Sbjct: 235 FGLSNLDLEYL----KSFDDNPKLYLGLKSLSLISGIDCFTIESKIEPYLLKMNLIKKTS 290 Query: 315 RGRLLMPIAWQHL 327 +GR + A ++ Sbjct: 291 KGRQITQKAIKYF 303 >gi|319777049|ref|YP_004136700.1| holliday junction ATP-dependent DNA helicase ruvb [Mycoplasma fermentans M64] gi|238809833|dbj|BAH69623.1| hypothetical protein [Mycoplasma fermentans PG18] gi|318038124|gb|ADV34323.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma fermentans M64] Length = 320 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 106/297 (35%), Positives = 172/297 (57%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +LRP EF GQ + LK IE ++ R E LDH+LF GPPG GKT+LA ++A EL Sbjct: 5 MLRPANFFEFVGQEKLIYTLKTMIEGSRYRKEPLDHILFYGPPGTGKTSLASILANELDT 64 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 G ++ K D+ + N+++ D++FIDEIH ++ VEEI+Y AMED+++D+++G Sbjct: 65 KIHYLQGALLEKKSDILTVFANVKENDIIFIDEIHSMNKNVEEIIYNAMEDYKIDIIIGP 124 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 +++ +++NL FTLI ATT++ LLT PL+DRFG RL+ Y +++ I++ + Sbjct: 125 EGNSKVMRMNLKPFTLIGATTKINLLTQPLKDRFGFIARLSQYNEKEIAKILENSEMVLN 184 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + IA S+GTPR+A LL+R+ DF+ IT++ + L + +G Sbjct: 185 IKSERGVIPLIAKYSKGTPRVANHLLKRILDFSIQNKEDEITKKTTYSTFKHLELYDLGL 244 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 + + YL ++ F I++I+ L+ RD + +EP ++ I + PRGR Sbjct: 245 GREHIEYLKVLNETFENKFAAIDSIAGVLNIDRDILIYELEPLLLYLKLIAKGPRGR 301 >gi|42561076|ref|NP_975527.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492573|emb|CAE77169.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321164|gb|ADK69807.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 307 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 177/297 (59%), Gaps = 3/297 (1%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 + RP EE+ GQ NLKVFI++AK + + +DH+ GP G GKT+LA ++A++L Sbjct: 1 MFRPEKWEEYIGQTNILDNLKVFIKSAKKQNKVVDHIFIYGPSGYGKTSLAYLLAKQLKT 60 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 N R +GP + KA D+ ++LT+++++DVLFIDEIH ++ V EI+YP +E+ +L++++G+ Sbjct: 61 NIRILNGPNLQKASDIISILTSIKEKDVLFIDEIHAVNKEVLEIIYPVLEENKLNIIIGK 120 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 +++ V I+L +FT+I ATT + + PL +RF I + Y +ED+ I++ Sbjct: 121 DYNSKVVNIDLPKFTIICATTEINKIPLPLLNRFPINFTMQEYNLEDMSKIIELYCNKFQ 180 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 + + + +A R TPRIA L++R++D + K I L +L I ++G Sbjct: 181 IKLDQDIYLYLASFCRKTPRIAINLIKRIKDHIICDNPKIIDVNYIKKVLDKLEIYELGL 240 Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 ++ YL MI +N +G++ I+ L+ I + IEP++I++ I RT + R Sbjct: 241 TITEINYLKMITKN---KRIGLDNIAHLLNTTPLIIANNIEPFLIRESLIIRTIKER 294 >gi|26553732|ref|NP_757666.1| Holliday junction DNA helicase B [Mycoplasma penetrans HF-2] gi|26453739|dbj|BAC44070.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2] Length = 322 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 179/298 (60%), Gaps = 9/298 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L++F G+ +NL +I+++K R E LDH LF GP G+GKTTLA++++ EL N Sbjct: 6 IRPQYLKDFCGKNNIKNNLLAYIDSSKNRNECLDHCLFYGPAGVGKTTLAKIISNELSQN 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + GP I + D+ L+ +L + ++FIDE+H ++ E+LY AMEDF++++ +G+ Sbjct: 66 IKIVQGPEIQEKTDILNLIYSLNENSIIFIDEVHSINPKCFELLYSAMEDFEINIEIGKD 125 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 + + +++ +FTLI ATT++G L P ++RFGI I ++ Y +++ I+ K + Sbjct: 126 FNKKLTTVSIPKFTLIGATTKLGNLPAPFEERFGIVINISEYTEKEIYKILDFSLKQCDI 185 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 V + I+ RS+G PRIA R+L R D H+ T + A+ L + + + G + Sbjct: 186 KVDKKVLEIISHRSKGIPRIAKRILARYLD-----HSLT-SNNTAETILKNIGVYEKGLN 239 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 ++DL YL I N +G++T+S L+ I + IEP++I+ FI +T GR+L Sbjct: 240 EIDLSYLLCIYEN---TKLGLKTLSQILNVDEKTIIEKIEPFLIKNNFISKTINGRIL 294 >gi|309799475|ref|ZP_07693706.1| holliday junction ATP-dependent DNA helicase RuvB [Streptococcus infantis SK1302] gi|308116889|gb|EFO54334.1| holliday junction ATP-dependent DNA helicase RuvB [Streptococcus infantis SK1302] Length = 183 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 98/153 (64%), Positives = 120/153 (78%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E+ GQ + L++FIEAAK R EALDHVL GPPGLGKTT+A V+A ELGVN Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + TSGPVI KAGDL A+L +LE DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G Sbjct: 80 LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174 ++RSV ++L FTLI ATTR G+L+NPL+ RF Sbjct: 140 EASRSVHLDLPPFTLIGATTRAGMLSNPLRARF 172 >gi|71894188|ref|YP_278296.1| Holliday junction DNA helicase B [Mycoplasma synoviae 53] Length = 304 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 165/288 (57%) Query: 32 GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 GQ S LK IE++K + + L+H+LF G PG+GKT+LA ++A E G + Sbjct: 2 GQKNLISTLKAMIESSKKQNKVLNHILFYGMPGMGKTSLAGIIANETKNKIHFIQGSNLE 61 Query: 92 KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 K DL +L+ + + D++FIDEIH ++ + E LY AMEDF DL++G +A+++++ + Sbjct: 62 KKSDLINILSVINENDIVFIDEIHSINKNIIEFLYSAMEDFVFDLIIGTESNAKALRMKI 121 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 FTLI ATT++ + P +DRFG R Y ED+K I++ KL + + +E + Sbjct: 122 KPFTLIGATTKINEMAQPFKDRFGYIARFVSYNAEDMKQIIRNSIKLLNINLGEEHFDFV 181 Query: 212 AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271 A SR TPRI LL R+ DFA V +A I ++I L + + G + + YL ++ Sbjct: 182 ASYSRNTPRIVNHLLERINDFAIVKNAGIIDKKIIKKTFKSLDLYEYGLTKDHVEYLQLL 241 Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 F PV ++T+S L P++ + + IEP ++ I +T +GR++ Sbjct: 242 RDGFDSKPVSLDTLSGVLIHPKEVLVNEIEPILLYLKLITKTSKGRMI 289 >gi|293363752|ref|ZP_06610494.1| Holliday junction DNA helicase RuvB [Mycoplasma alligatoris A21JP2] gi|292552673|gb|EFF41441.1| Holliday junction DNA helicase RuvB [Mycoplasma alligatoris A21JP2] Length = 314 Score = 198 bits (504), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 102/296 (34%), Positives = 171/296 (57%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP T EF GQ + +K I +A+ + ++LDH+L GPPG GKT+LA ++A Sbjct: 5 LRPSTFNEFIGQAKLKETIKAMIVSARVQNKSLDHILLYGPPGTGKTSLAGIIASAQKSF 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 I K DL ++ + L D+LFIDE+H L+ ++EE+LY AMEDF D+++G Sbjct: 65 IHYVQASNIEKKSDLISIFSTLNQGDILFIDEVHSLNKMIEELLYNAMEDFVFDVIIGTE 124 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +A+++++ + FTLIAATT++ ++ PL+DRFG+ +++ YE +L I++ A + L Sbjct: 125 DNAKTMRMKIKPFTLIAATTKINNISQPLKDRFGLVGKMHNYEDSELVKILKNSASILKL 184 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + A I SR TPRIA LL+RV DF + + I +I L + + G Sbjct: 185 DLGQSEAEYIVSFSRQTPRIANNLLKRVNDFKIAKNKEIIDLKIIQKTFDNLELYEFGLG 244 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 + + Y+ ++ +F ++TIS+ L+ ++ + + IEP ++ I+++ RGR Sbjct: 245 KDHVEYIQLLKDSFDEKWASLDTISSLLNTNKENLLNDIEPILLFYRLIKKSSRGR 300 >gi|193216718|ref|YP_001999960.1| Holliday junction DNA helicase RuvB [Mycoplasma arthritidis 158L3-1] gi|193002041|gb|ACF07256.1| Holliday junction DNA helicase RuvB [Mycoplasma arthritidis 158L3-1] Length = 317 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 104/296 (35%), Positives = 170/296 (57%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 R ++ +F GQ + LKV I +A +DH+LF GPPGLGKT+LA+++A E N Sbjct: 6 FRVKSFSDFIGQEKITKTLKVMIASASKLKRPIDHLLFYGPPGLGKTSLAKIIATETKRN 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 GP++ K D+ LL ++++ D++FIDE+H ++ +EE+LY A+ED +D+ +G Sbjct: 66 IVYAQGPLLEKKSDILTLLNSIKENDIIFIDEVHGINHNLEELLYSALEDGVVDIPLGVE 125 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 R +++ L F+LIAATT+ LL+ PL+DRFG +L Y E++ I+ A + Sbjct: 126 GDRRIMRMKLKSFSLIAATTKFNLLSQPLKDRFGFIGKLTPYTDEEIIKIITNSAARNNI 185 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++A +IA SR TPR+A LL+RV DFA IT ++ A + I + G Sbjct: 186 PIDEKAIKKIAEHSRQTPRVANNLLKRVYDFAVYEKKDLITEKLVKKAFKFIGIFQYGLV 245 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 + YL ++ + F ++ IS +S+ + I + IEP ++ I+++ RGR Sbjct: 246 YSQIEYLRVLHQVFNDSFGSLDAISGIISDEKSTIINEIEPLLLVYKLIEKSSRGR 301 >gi|47459106|ref|YP_015968.1| Holliday junction DNA helicase B [Mycoplasma mobile 163K] gi|47458435|gb|AAT27757.1| holliday junction DNA helicase RuvB [Mycoplasma mobile 163K] Length = 323 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 164/295 (55%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + EF GQ LKV I+++ R E LDH++F PG GKT+LA ++++E+ N Sbjct: 13 RPNSFNEFIGQKNLKHTLKVLIKSSILRKENLDHLIFQANPGYGKTSLAYIISKEMNSNL 72 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142 + G K DL +L ++ + D++F+DEIH ++ +EEILY M+DF +D+ +G Sbjct: 73 KIVQGNQFEKKSDLLSLFVSVNENDIIFVDEIHAINKSIEEILYSVMDDFVIDIQIGPEG 132 Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202 + V++NL FTLI ATT++ L+ PL DRFG + + Y ++ I++ A+ + Sbjct: 133 EKKIVRMNLPHFTLIGATTQIEKLSKPLIDRFGFVGKFSSYNENEINLILKNLARKLKIK 192 Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262 + ++A I+M S PRIA LL+R DFA K+I A L I + G + Sbjct: 193 IDEQALKLISMNSSYIPRIAINLLKRAWDFAIFDEKKSIDITTIKKAFNYLGIFENGLNI 252 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 L ++YL ++ + F ++ IS+ L ++ + IE ++ I++T RGR Sbjct: 253 LHIKYLKLLYQAFKNKSASLDAISSILGLSKNNVVFHIESNLLNLELIEKTSRGR 307 >gi|301633613|gb|ADK87167.1| Holliday junction DNA helicase RuvB [Mycoplasma pneumoniae FH] Length = 307 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 182/297 (61%), Gaps = 9/297 (3%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83 P EF G+ E + +++ I+A++ LDH+L GPPG+GKTTLA+++A E+ + Sbjct: 8 PNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIASEMNTKLQ 67 Query: 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143 G + + D ++ ++ DVLF+DEIH ++ V E+++P M+DF++ +++G+ + Sbjct: 68 IIQGGHLQRPSDFLNAVSLIKKGDVLFVDEIHAVAPSVMELMFPVMDDFRVQVLIGKDFN 127 Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203 ++ V++ ++ FTLI ATT+ G + NPL+DRFG+ + +++Y ++++ IV + L + Sbjct: 128 SKMVEMKVNPFTLIGATTQFGKIINPLEDRFGMILNIDYYSNQEIERIVSIYGEQMELEL 187 Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR-LAIDKMGFDQ 262 E +I S+ TPRIA R+++R+ + K + ++I AAL + L I K G Sbjct: 188 KPEEITQITQHSKQTPRIAIRIVKRLFE------QKIVNKKIDLAALFKSLMIYKNGLQS 241 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 +D++YL A N P GI++I + L + +E+ IEP+++++ IQ+T +GR++ Sbjct: 242 IDVQYLK--ALNGQYEPQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRII 296 >gi|67810107|gb|AAY81985.1| Holliday junction DNA helicase [Wolbachia pipientis] Length = 147 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 91/147 (61%), Positives = 122/147 (82%) Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 GLGKTTLAQ+V++EL V+FR+TSGP+++KAGDLAA+LT L +DVLFIDEIHRL+ +EE Sbjct: 1 GLGKTTLAQIVSKELRVSFRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEE 60 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 +LY AMEDF LD++VGEGPS R+++I+L FTLI ATTR+GLL+ PL+DRFGIP+ L FY Sbjct: 61 VLYTAMEDFCLDILVGEGPSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFY 120 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACE 210 E+L I++RGA++ + ++AA E Sbjct: 121 SFEELVNIIKRGARVLSAEIEEDAARE 147 >gi|13508275|ref|NP_110225.1| Holliday junction DNA helicase B [Mycoplasma pneumoniae M129] gi|2498874|sp|P75242|RUVB_MYCPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|1673978|gb|AAB95954.1| Holliday junction DNA helicase RuvB [Mycoplasma pneumoniae M129] Length = 307 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 181/297 (60%), Gaps = 9/297 (3%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83 P EF G+ E + +++ I+A++ LDH+L GPPG+GKTTLA+++A E+ + Sbjct: 8 PNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIASEMNTKLQ 67 Query: 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143 G + + D ++ ++ DVLF+DEIH ++ V E+++P M+DF++ +++G+ + Sbjct: 68 IIQGGHLQRPSDFLNAVSLIKKGDVLFVDEIHAVAPSVMELMFPVMDDFRVQVLIGKDFN 127 Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203 ++ V++ ++ FT I ATT+ G + NPL+DRFG+ + +++Y ++++ IV + L + Sbjct: 128 SKMVEMKVNPFTWIGATTQFGKIINPLEDRFGMILNIDYYSNQEIERIVSIYGEQMELEL 187 Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR-LAIDKMGFDQ 262 E +I S+ TPRIA R+++R+ + K + ++I AAL + L I K G Sbjct: 188 KPEEITQITQHSKQTPRIAIRIVKRLFE------QKIVNKKIDLAALFKSLMIYKNGLQS 241 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 +D++YL A N P GI++I + L + +E+ IEP+++++ IQ+T +GR++ Sbjct: 242 IDVQYLK--ALNGQYEPQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRII 296 >gi|12045219|ref|NP_073030.1| Holliday junction DNA helicase RuvB [Mycoplasma genitalium G37] gi|255660280|ref|ZP_05405689.1| Holliday junction DNA helicase RuvB [Mycoplasma genitalium G37] gi|2498873|sp|Q49425|RUVB_MYCGE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|3844943|gb|AAC71584.1| Holliday junction DNA helicase RuvB [Mycoplasma genitalium G37] gi|166078959|gb|ABY79577.1| Holliday junction DNA helicase RuvB [synthetic Mycoplasma genitalium JCVI-1.0] Length = 307 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 184/305 (60%), Gaps = 9/305 (2%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83 P T +EF G+ E S +++ I+A+K LDH+L GPPG+GKTTLA+++A EL + Sbjct: 8 PNTFDEFVGKQEIISQIQLSIKASKLNKTQLDHILLYGPPGVGKTTLARLIANELKTKLQ 67 Query: 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143 G + K D ++ ++ DVLFIDEIH ++ V E++YP M+ F++ +++G+ + Sbjct: 68 IIQGGHLQKPSDFLNAISLIKKGDVLFIDEIHAVAPNVMELMYPVMDVFKIQVLIGKDFN 127 Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203 ++ V++ ++ FTLI ATT++G + NPL+DRFG+ + +N+Y +++ +V K L + Sbjct: 128 SKIVEMKVNPFTLIGATTQLGKIINPLEDRFGVILNINYYSNAEIEKMVSIYGKQMKLEL 187 Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR-LAIDKMGFDQ 262 I S+ TPRIA R++RR+ + K + ++I L + L I K G Sbjct: 188 NSNEISAITEHSKQTPRIAIRIVRRIFE------QKIVNKKIDLEGLFKNLMIYKNGLQS 241 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322 +D++YL ++ R P GI++IS+ L R IE+ IEP+++++ IQ+T +GR++ Sbjct: 242 IDVQYLEVLNRQ--NEPQGIKSISSMLGIDRHTIENKIEPFLLRENMIQKTKKGRIITNS 299 Query: 323 AWQHL 327 ++L Sbjct: 300 GREYL 304 >gi|167973719|ref|ZP_02555996.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167975816|ref|ZP_02558093.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167987906|ref|ZP_02569577.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168362931|ref|ZP_02696105.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867808|ref|ZP_03079808.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273848|ref|ZP_03206382.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225550951|ref|ZP_03771900.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551197|ref|ZP_03772143.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903160|gb|EDT49449.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188019069|gb|EDU57109.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998029|gb|EDU67126.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660168|gb|EDX53548.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660505|gb|EDX53762.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249603|gb|EDY74385.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379012|gb|EEH01377.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380105|gb|EEH02467.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 312 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 103/299 (34%), Positives = 170/299 (56%), Gaps = 13/299 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP+ L++F G+ + SNLK+++ A K + DH L G G GKTTLA ++A E+GV+ Sbjct: 7 FRPQYLKDFIGKDQLKSNLKIYLNATKRLKSSFDHTLLHGLAGTGKTTLATIIANEMGVD 66 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 T G ++ K D+ LL+ +++ DV+F+DEIH + E LY +EDF +D+ +G+ Sbjct: 67 CHMTQGNLLNKPVDIINLLSLIKENDVIFVDEIHACGLAAFETLYSVLEDFCIDISIGKD 126 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-G 200 +A+ ++ + FTLI ATT +G + PL++RFG L+ YE ++ I+ + ++ Sbjct: 127 FNAKMTRLKVPHFTLIGATTMLGKIPKPLEERFGHVFYLSEYETSEIAAIILKNNQIHFQ 186 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAALLRLAIDKM 258 + + D+ IA ++G PR+A RLL+RV DF + K I +I I Sbjct: 187 INLNDQEIDLIANSAKGIPRLANRLLKRVVDFKINGFDNIKNIFEKI--------QIYDF 238 Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G ++ D+ YL ++ + +G+++I+ L + IE IEPY+IQ FI + RGR Sbjct: 239 GLEEQDINYLNVLYQQ--ENEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGR 295 >gi|209554525|ref|YP_002284875.1| Holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|226698787|sp|B5ZBT5|RUVB_UREU1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|209542026|gb|ACI60255.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 312 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 103/299 (34%), Positives = 170/299 (56%), Gaps = 13/299 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP+ L++F G+ + SNLK+++ A K + DH L G G GKTTLA ++A E+GV+ Sbjct: 7 FRPQYLKDFIGKDQLKSNLKIYLNATKRLKSSFDHTLLHGLAGTGKTTLATIIANEMGVD 66 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 T G ++ K D+ LL+ +++ DV+F+DEIH + E LY +EDF +D+ +G+ Sbjct: 67 CHMTQGNLLNKPVDIINLLSLIKENDVIFVDEIHACGLAAFETLYSVLEDFCIDISIGKD 126 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-G 200 +A+ ++ + FTLI ATT +G + PL++RFG L+ YE ++ I+ + ++ Sbjct: 127 FNAKMTRLKVPHFTLIGATTMLGKIPEPLEERFGHVFYLSEYETSEIAAIILKNNQIHFQ 186 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAALLRLAIDKM 258 + + D+ IA ++G PR+A RLL+RV DF + K I +I I Sbjct: 187 INLNDQEIDLIANSAKGIPRLANRLLKRVVDFKINGFDNIKNIFEKI--------QIYDF 238 Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G ++ D+ YL ++ + +G+++I+ L + IE IEPY+IQ FI + RGR Sbjct: 239 GLEEQDINYLNVLYQQ--ENEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGR 295 >gi|167972862|ref|ZP_02555139.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|184209206|gb|EDU06249.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar 5 str. ATCC 27817] Length = 312 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 103/299 (34%), Positives = 170/299 (56%), Gaps = 13/299 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP+ L++F G+ + SNLK+++ A K + DH L G G GKTTLA ++A E+GV+ Sbjct: 7 FRPQYLKDFIGKDQLKSNLKIYLNATKRLKSSFDHTLLHGLAGTGKTTLATIIANEMGVD 66 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 T G ++ K D+ LL+ +++ DV+F+DEIH + E LY +EDF +D+ +G+ Sbjct: 67 CNMTQGNLLNKPVDIINLLSLIKENDVIFVDEIHACGLAAFETLYSVLEDFCIDISIGKD 126 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-G 200 +A+ ++ + FTLI ATT +G + PL++RFG L+ YE ++ I+ + ++ Sbjct: 127 FNAKMTRLKVPHFTLIGATTMLGKIPKPLEERFGHVFYLSEYETSEIAAIILKNNQIHFQ 186 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAALLRLAIDKM 258 + + D+ IA ++G PR+A RLL+RV DF + K I +I I Sbjct: 187 INLNDQEIDLIANSAKGIPRLANRLLKRVVDFKINGFDNIKNIFEKI--------QIYDF 238 Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G ++ D+ YL ++ + +G+++I+ L + IE IEPY+IQ FI + RGR Sbjct: 239 GLEEQDINYLNVLYQQ--ENEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGR 295 >gi|237755644|ref|ZP_04584257.1| holliday junction ATP-dependent DNA helicase RuvB [Sulfurihydrogenibium yellowstonense SS-5] gi|237692208|gb|EEP61203.1| holliday junction ATP-dependent DNA helicase RuvB [Sulfurihydrogenibium yellowstonense SS-5] Length = 196 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 88/185 (47%), Positives = 131/185 (70%) Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202 SA+++++++++FTLI ATTR+G+L+ PL RFGI + L+FY+ + LK I+ R AK+ + Sbjct: 6 SAKAIRLDINKFTLIGATTRIGMLSTPLISRFGIILNLDFYDEKSLKEIILRSAKILNIN 65 Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262 +T+E A EIA S+GTPRIA +LL+RV D+A + I RE A AL L+I K G D Sbjct: 66 ITEEGALEIAKHSKGTPRIANKLLKRVYDYAVIHKKDVIDRETAFDALRFLSIGKDGIDG 125 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322 L L+YL + F GGPVG+ TIS +SE + IE++IEPY+++ GFI+RT +GR+ +P Sbjct: 126 LSLKYLKSLVYQFNGGPVGLNTISFAISEDKRTIEEVIEPYLLKLGFIKRTAKGRVALPT 185 Query: 323 AWQHL 327 A ++L Sbjct: 186 AVEYL 190 >gi|13358011|ref|NP_078285.1| Holliday junction DNA helicase B [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168281626|ref|ZP_02689293.1| holliday junction DNA helicase RuvB [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|170762291|ref|YP_001752533.1| Holliday junction DNA helicase RuvB [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|20140319|sp|Q9PQ42|RUVB_UREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189046056|sp|B1AJ89|RUVB_UREP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|11277827|pir||F82889 holliday junction DNA helicase UU448 [imported] - Ureaplasma urealyticum gi|6899440|gb|AAF30860.1|AE002141_6 holliday junction DNA helicase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827868|gb|ACA33130.1| holliday junction DNA helicase RuvB [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675948|gb|EDT87853.1| holliday junction DNA helicase RuvB [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 312 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 105/299 (35%), Positives = 169/299 (56%), Gaps = 13/299 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP+ L++F G+ + +NLKV++ A+K + DH L G G GKTTLA ++A E+ VN Sbjct: 7 FRPQYLKDFIGKEQLKNNLKVYLTASKRLENSFDHTLLHGLSGTGKTTLALIIANEMNVN 66 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 T G ++ K D+ LL+ +++ DV+FIDEIH + E LY +EDF +D+ +G+ Sbjct: 67 CHITQGNLLNKPIDIINLLSLIKENDVVFIDEIHACGLGAFETLYSVLEDFCIDINIGKD 126 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-G 200 +++ ++ + FTLI ATT G + L++RFG LN YE ++ I+ + ++ Sbjct: 127 FNSKMTRLKIPHFTLIGATTIFGKIPKSLEERFGHIFHLNEYEPSEISAIILKNNQMHFQ 186 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAALLRLAIDKM 258 + + +E IA ++G PR+A RLL+RV DF K I ++I I + Sbjct: 187 IDLNEEEIDLIANNAKGIPRLANRLLKRVVDFKINGFNDIKNIFKKI--------QIYEF 238 Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G D+ D+ YL ++ R +G+++I+ L + IE IEPY+IQ FI + RGR Sbjct: 239 GLDEQDINYLNVLYRQ--DNEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGR 295 >gi|226324736|ref|ZP_03800254.1| hypothetical protein COPCOM_02522 [Coprococcus comes ATCC 27758] gi|225207184|gb|EEG89538.1| hypothetical protein COPCOM_02522 [Coprococcus comes ATCC 27758] Length = 155 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/150 (58%), Positives = 115/150 (76%), Gaps = 3/150 (2%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M R + + N+ +ED I S LRP+ LE++ GQ +A LK++IEAAK+R EALDHVLF Sbjct: 1 MGRRIITTENL-EEDVKIESHLRPQLLEDYIGQAKAKETLKIYIEAAKSRGEALDHVLFY 59 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 GPPGLGKTTLA ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+ Sbjct: 60 GPPGLGKTTLAGIIANEMGVNIKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQ 119 Query: 121 VEEILYPAMEDFQLDLMVGEG-PSARSVKI 149 VEE+LYPAMEDF +D+M+G+G RSV I Sbjct: 120 VEEVLYPAMEDFAIDIMIGKGLRQGRSVWI 149 >gi|5514774|emb|CAB50776.1| RuvB protein [Pseudomonas putida] Length = 171 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 85/156 (54%), Positives = 110/156 (70%) Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 RL FY +DL TIV R A + GLA+ D+ A EIA R+RGTPRIA RLLRRVRD+AEV Sbjct: 3 RLEFYNDKDLSTIVSRSANILGLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGK 62 Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298 IT+ +AD AL L +D+ GFD D R L + F GGPVG++ ++A +SE R IED Sbjct: 63 GQITKAVADMALNLLDVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIED 122 Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334 ++EPY+IQQG+I RTPRGR++ A+ H G++IP R Sbjct: 123 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPGR 158 >gi|270684400|ref|ZP_06222796.1| Holliday junction DNA helicase ruvB [Haemophilus influenzae HK1212] gi|270316265|gb|EFA28211.1| Holliday junction DNA helicase ruvB [Haemophilus influenzae HK1212] Length = 111 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 79/109 (72%), Positives = 96/109 (88%) Query: 40 LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99 + +FI+AAK R +ALDH+L GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+ Sbjct: 1 MDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAM 60 Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVK 148 LTNLE DVLFIDEIHRLS +EE+LYPAMED+QLD+M+GEGP+ARS+K Sbjct: 61 LTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIK 109 >gi|226324737|ref|ZP_03800255.1| hypothetical protein COPCOM_02523 [Coprococcus comes ATCC 27758] gi|225207185|gb|EEG89539.1| hypothetical protein COPCOM_02523 [Coprococcus comes ATCC 27758] Length = 170 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 79/166 (47%), Positives = 117/166 (70%) Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224 +LT PL+DRFG+ RL FY ++L+TI+ R A + + + ++ A E+A RSRGTPR+A R Sbjct: 1 MLTAPLRDRFGVVNRLEFYTEKELQTIIIRSAGVLDVEIDEKGALEMARRSRGTPRLANR 60 Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284 LL+RVRDFA+V + IT E+A AL L +D++G D +D LT + F GGPVG++T Sbjct: 61 LLKRVRDFAQVKYEGVITEEVARQALDLLDVDRLGLDHVDRNLLTTMIEKFQGGPVGLDT 120 Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 ++A + E +ED+ EPY+++ GF+QRTPRGR++ +A+ HLG D Sbjct: 121 LAAAIGEDAGTVEDVYEPYLLKNGFLQRTPRGRVVTDLAYTHLGFD 166 >gi|50365238|ref|YP_053663.1| Holliday junction DNA helicase B [Mesoplasma florum L1] gi|50363794|gb|AAT75779.1| holliday junction DNA helicase [Mesoplasma florum L1] Length = 315 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 164/298 (55%), Gaps = 3/298 (1%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP E+ GQ + NLK+ IE++ + + LD ++F GP G+GKT+LA ++++ L Sbjct: 5 FRPSKWSEYIGQEKVIKNLKICIESSIKQNKVLDPIIFSGPSGMGKTSLAYLLSKILKTK 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 +GP + + DL ++LT++++ +LFIDE+H +S + E+LYP +E+ +L +++G+ Sbjct: 65 IHIVNGPSLQRPSDLISVLTSIKENQILFIDEVHSVSKDIMEVLYPVLEENKLSIIIGKE 124 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 +++ V I L FT+I ATT + L P +RF I L Y +DL I+ Sbjct: 125 YNSKIVNIKLPNFTIITATTEINKLPFPFLNRFPIQFELEGYNHDDLTKIIINTFNKLQY 184 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + E A IA SR PR+A L++R+ DF K ++ + ++ + + G + Sbjct: 185 KIEIEQAKIIAKFSRLVPRVAINLVKRIYDFLITEKIKDLSEKNLIWVFKQMGLYEYGLN 244 Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 + DL YL + N + +++++ ++ P I + +EP +++ I +T RGR L Sbjct: 245 EKDLDYLFTLLEN---NTLSLDSLAQIINVPNQTILNNMEPIFLKERLIIKTGRGRQL 299 >gi|167041777|gb|ABZ06519.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine microorganism HF4000_093M11] Length = 125 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/122 (64%), Positives = 99/122 (81%) Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 V R+TSGPVI + GDLAA+LTNLE + FIDEIHRL+ +VEE+LY AMEDF LD+++G Sbjct: 3 VPLRATSGPVIERQGDLAAILTNLEPGTIFFIDEIHRLNRVVEEVLYGAMEDFTLDIIIG 62 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 EGP AR+VKI+L FTL+ ATTR GLLT+PL++RFGI RLNFY+ E+LKTI+ R A L Sbjct: 63 EGPGARTVKIDLPHFTLVGATTRAGLLTSPLRERFGIQFRLNFYDPEELKTIILRAASLL 122 Query: 200 GL 201 G+ Sbjct: 123 GM 124 >gi|62184297|gb|AAX76510.1| RuvB [Allochromatium vinosum DSM 180] Length = 164 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 75/143 (52%), Positives = 100/143 (69%) Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 DL IVQR A + G+ + A EIA R+RGTPRIA RLLRRVRD+A+V I+ EIA Sbjct: 1 DLTHIVQRSAGILGIEAEPDGAAEIARRARGTPRIANRLLRRVRDYAQVRGDGRISAEIA 60 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 D AL L +D +GFD +D R L+ + F GGPVG+E+++A + E R IED++EP++IQ Sbjct: 61 DRALSMLKVDALGFDHMDRRLLSAVIEKFDGGPVGVESLAAAIGEERGTIEDVLEPFLIQ 120 Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329 QGF+ RTPRGR+ A+QH G+ Sbjct: 121 QGFLMRTPRGRMATQSAYQHFGL 143 >gi|145652290|gb|ABP88206.1| hypothetical protein [Borrelia lonestari] Length = 157 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 74/150 (49%), Positives = 103/150 (68%), Gaps = 1/150 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 + +R LS N D + + LRP++L EF GQ NL +FI A+K R E+LDHV Sbjct: 8 LQERTNFLSSNKDFLYDTNENELRPKSLVEFVGQSHIKENLNIFIRASKDRNESLDHVFL 67 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GPPGLGKTTLA +VA E+ + TS P + K D+ +LT L+D+ +LFIDE+HRL Sbjct: 68 SGPPGLGKTTLASIVAFEMNATIKVTSAPALDKPKDIVGILTTLDDKSILFIDELHRLKP 127 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKI 149 +VEE+LY AMED+++D ++G+GPSAR+V+I Sbjct: 128 VVEEMLYIAMEDYKIDWIIGQGPSARTVRI 157 >gi|218680790|ref|ZP_03528687.1| Holliday junction DNA helicase RuvB [Rhizobium etli CIAT 894] Length = 101 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 74/101 (73%), Positives = 92/101 (91%) Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 MEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E+L Sbjct: 1 MEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVEEL 60 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 + IV+RGA+L L +T+E A EIA R+RGTPRIAGRLLRRV Sbjct: 61 ELIVRRGARLMNLPMTEEGAREIARRARGTPRIAGRLLRRV 101 >gi|323246750|gb|EGA30722.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] Length = 137 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/134 (54%), Positives = 94/134 (70%) Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H I+ EIA AL L +D G Sbjct: 2 GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEG 61 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 FD +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+ Sbjct: 62 FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 121 Query: 320 MPIAWQHLGIDIPH 333 AW H GI P Sbjct: 122 TVRAWNHFGITPPE 135 >gi|213027805|ref|ZP_03342252.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 150 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/134 (53%), Positives = 94/134 (70%) Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 G+ ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H I+ EIA AL L +D G Sbjct: 15 GVEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEG 74 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 FD +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+ Sbjct: 75 FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 134 Query: 320 MPIAWQHLGIDIPH 333 AW H GI P Sbjct: 135 TVRAWNHFGITPPE 148 >gi|213581978|ref|ZP_03363804.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 133 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 71/131 (54%), Positives = 92/131 (70%) Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262 ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H I+ EIA AL L +D GFD Sbjct: 1 MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDY 60 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322 +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+ Sbjct: 61 MDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVR 120 Query: 323 AWQHLGIDIPH 333 AW H GI P Sbjct: 121 AWNHFGITPPE 131 >gi|168698683|ref|ZP_02730960.1| Holliday junction DNA helicase RuvB [Gemmata obscuriglobus UQM 2246] Length = 318 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 99/301 (32%), Positives = 152/301 (50%), Gaps = 9/301 (2%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +I + P +L GQ ++V ++AA A+ DH L GPPG GKT A+V+A+E Sbjct: 6 EIGDVAPTSLAHLIGQRSVVEQVRVALDAAHQDAKKFDHALLCGPPGCGKTQTAKVIAQE 65 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 + F+ G I DL ALL +DRDV+ +DE H L + LY A++ ++ L Sbjct: 66 MAGEFQEVLGQAIQSPADLNALLLGAKDRDVILLDEAHELDREYQTALYLAIDQRRVLLQ 125 Query: 138 V-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196 G P A I L+ FTL+ ATT L PL+DR + +R FY E+L ++++ A Sbjct: 126 TKGRTPQA----IPLADFTLLLATTDEFKLLQPLRDRMRLCLRFGFYSAEELAELIRQRA 181 Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256 V IA RSRGTPR+A RLL+ R + +T + A L ID Sbjct: 182 AALAWDVDVNVYRPIAARSRGTPRLALRLLQAARRVCRSQGDERVTGVHLERACLLEGID 241 Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316 +G + +YL ++ G G + I++ L P + ++ EP++I+ G + + +G Sbjct: 242 GLGLGPTEQQYLAVL----GEGANRLNVIASRLGLPTRTVAEVTEPFLIRAGLVAKDDQG 297 Query: 317 R 317 R Sbjct: 298 R 298 >gi|269214884|ref|ZP_06158888.1| holliday junction DNA helicase RuvB [Neisseria lactamica ATCC 23970] gi|269208795|gb|EEZ75250.1| holliday junction DNA helicase RuvB [Neisseria lactamica ATCC 23970] Length = 131 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 71/129 (55%), Positives = 93/129 (72%) Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262 +++E A EIA RSRGTPRIA RLLRRVRDFA+V + TI IADAAL L +D G D Sbjct: 1 MSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSMLDVDAQGLDV 60 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322 +D ++L + FGGGPVG++ ++A + E D IED+IEPY+IQQGF+QRTPRGR+ Sbjct: 61 MDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQRTPRGRMATER 120 Query: 323 AWQHLGIDI 331 A+ H G+ + Sbjct: 121 AYLHFGLPV 129 >gi|289829035|ref|ZP_06546731.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 131 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/129 (55%), Positives = 90/129 (69%) Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264 D+ A E+A R+RGTPRIA RLLRRVRDFAEV H I+ EIA AL L +D GFD +D Sbjct: 1 DDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDYMD 60 Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324 + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+ AW Sbjct: 61 RKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVRAW 120 Query: 325 QHLGIDIPH 333 H GI P Sbjct: 121 NHFGITPPE 129 >gi|309799476|ref|ZP_07693707.1| holliday junction ATP-dependent DNA helicase RuvB [Streptococcus infantis SK1302] gi|308116890|gb|EFO54335.1| holliday junction ATP-dependent DNA helicase RuvB [Streptococcus infantis SK1302] Length = 155 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/151 (46%), Positives = 100/151 (66%) Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + +Y +DL IV+R A + + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++ Sbjct: 1 MEYYAHDDLTEIVERTADIFEMEITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGDG 60 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299 I I D AL L +D G D +D + L + +GGGPVG+ T+S ++E R+ +ED+ Sbjct: 61 LIDDVITDKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDM 120 Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330 EPY+IQ+GFI RT GR+ A++HLG + Sbjct: 121 YEPYLIQKGFIMRTRSGRVATAKAYEHLGYE 151 >gi|325107531|ref|YP_004268599.1| ATPase AAA [Planctomyces brasiliensis DSM 5305] gi|324967799|gb|ADY58577.1| AAA ATPase central domain protein [Planctomyces brasiliensis DSM 5305] Length = 313 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 149/308 (48%), Gaps = 15/308 (4%) Query: 26 TLEEFTGQVEACSNLKVFIEA------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +L GQ A + L+ ++A EA H+L GP G GKT L +++A+EL Sbjct: 10 SLNHVVGQQRAVTVLRTALDAYWHDRSKNGGKEAFPHLLMCGPGGTGKTLLTELIAKELC 69 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 I G + LL LE +L +DEIH LS V+ LY A+ED +L L Sbjct: 70 TECTVELAQNIGNIGQMQGLLMMLESEHILLVDEIHELSETVQVSLYRAIEDRKLFLGGN 129 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 P + L FTLI ATT LLT ++DRF I +RL Y +++ ++ + + Sbjct: 130 RKP------VTLPPFTLIGATTDEYLLTPSMRDRFKILLRLQHYSHDEMAVLIDQRTRRL 183 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 G + + +A RSRG PR+A RLL + A I + + L ID +G Sbjct: 184 GWEIDAVSVTHLAARSRGVPRLAVRLLESAKRVASSKGMDRIEPKHVEEMLAIEGIDSLG 243 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 FD ++ RYL ++ + GPV + ++ L P+ IE + E I+ G I + +GR L Sbjct: 244 FDPVEQRYLKLLKES--QGPVRLNVLATHLGLPKQTIE-MFERDFIRLGLITKGDKGRAL 300 Query: 320 MPIAWQHL 327 P +HL Sbjct: 301 TPKGVEHL 308 >gi|308126386|ref|ZP_07663741.1| holliday junction ATP-dependent DNA helicase RuvB [Vibrio parahaemolyticus AQ4037] gi|308109584|gb|EFO47124.1| holliday junction ATP-dependent DNA helicase RuvB [Vibrio parahaemolyticus AQ4037] Length = 129 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 67/125 (53%), Positives = 89/125 (71%) Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265 E A E+A R+RGTPRIA RLLRRVRD+AEV I ++AD AL L +D GFD +D Sbjct: 4 EGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLDVDAQGFDYMDR 63 Query: 266 RYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325 + L I FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTPRGR+ A+ Sbjct: 64 KLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGRIATDRAYL 123 Query: 326 HLGID 330 H GI+ Sbjct: 124 HFGIE 128 >gi|323219947|gb|EGA04420.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 121 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/119 (55%), Positives = 83/119 (69%) Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274 +RGTPRIA RLLRRVRDFAEV H I+ EIA AL L +D GFD +D + L + Sbjct: 1 ARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDK 60 Query: 275 FGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 61 FFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 119 >gi|326392805|ref|ZP_08214061.1| Holliday junction DNA helicase RuvB domain [Thermoanaerobacter ethanolicus JW 200] gi|325991153|gb|EGD49889.1| Holliday junction DNA helicase RuvB domain [Thermoanaerobacter ethanolicus JW 200] Length = 111 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/110 (58%), Positives = 82/110 (74%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E +L+++ +QEDA LRPR L E+ GQ + LK++IEAAK R E LDHVL GPP Sbjct: 2 EERILTQSFTQEDASEYSLRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPP 61 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113 GLGKTTLA V++ E+GV + TSGP I K+GDLAA+LTNL++ D+LFIDE Sbjct: 62 GLGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFIDE 111 >gi|297520076|ref|ZP_06938462.1| Holliday junction DNA helicase RuvB [Escherichia coli OP50] Length = 115 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 66/115 (57%), Positives = 86/115 (74%), Gaps = 1/115 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ LEE+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 GP GLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEI Sbjct: 61 FGPSGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEI 115 >gi|213022655|ref|ZP_03337102.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 114 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 65/114 (57%), Positives = 85/114 (74%), Gaps = 1/114 (0%) Query: 1 MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + L+S + ED +RP+ L E+ GQ + S +++FI+AAK R +ALDH+L Sbjct: 1 MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDE Sbjct: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE 114 >gi|325107722|ref|YP_004268790.1| Holliday junction DNA helicase RuvB domain protein [Planctomyces brasiliensis DSM 5305] gi|324967990|gb|ADY58768.1| Holliday junction DNA helicase RuvB domain protein [Planctomyces brasiliensis DSM 5305] Length = 318 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 84/300 (28%), Positives = 148/300 (49%), Gaps = 8/300 (2%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D+ ++P +L G ++V ++A L GPPG GK++LA V+A+E Sbjct: 8 DVQDIKPTSLRHLIGNDHVRQQVQVALDACFEDQVRFPDTLLTGPPGQGKSSLANVIAQE 67 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 L T G ++ +L ALL +D +++ IDE+H L + L+ ++ +L + Sbjct: 68 LATTLHETLGQSVSGPAELNALLLGAKDGELIHIDEVHELPTEQQTALFICLDQRKLLVT 127 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 +G ++ I L++F+L+ +TT + PL+DR + + L + +L +V++ ++ Sbjct: 128 NQKG----ALSIPLAKFSLLLSTTDPHKVLQPLRDRMRMVLELAYLTEAELADVVRQRSR 183 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 + D EIA+R RGTPRIA R+L+ R + +T A ID Sbjct: 184 ALNWNIADGVPDEIAVRGRGTPRIALRILQSARRVSRSEGEHEVTFAHLRRACELDRIDG 243 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 G + RYL ++ G GP + +++ L P + D+IEP+MI+ G + + GR Sbjct: 244 KGLSSQEQRYLELL----GEGPTRLNVLASCLGVPSKTVSDVIEPFMIRTGLVVKDNGGR 299 >gi|190149555|ref|YP_001968080.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914686|gb|ACE60938.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 137 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 66/120 (55%), Positives = 88/120 (73%), Gaps = 4/120 (3%) Query: 1 MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 M++ + ++S + +E+ I +RP+ L ++ GQ +++FI+AAK R EALDH+L Sbjct: 1 MIEADRIISASPKREEEIIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI---HR 116 GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE DVLFIDEI HR Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIPAYHR 120 >gi|213029124|ref|ZP_03343571.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 85 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 58/85 (68%), Positives = 72/85 (84%) Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 EIHRLS +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L FTLI ATTR G LT+PL+D Sbjct: 1 EIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRD 60 Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAK 197 RFGI RL FY++ DL+ IV R A+ Sbjct: 61 RFGIVQRLEFYQVPDLQHIVGRSAR 85 >gi|218660348|ref|ZP_03516278.1| Holliday junction DNA helicase RuvB [Rhizobium etli IE4771] Length = 110 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 67/106 (63%), Positives = 79/106 (74%), Gaps = 2/106 (1%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L+S ED D++L RP++L+EFTGQ EA +NLK+FIEAAK R EALDHVLFVGPPGLG Sbjct: 7 LISPEKRGEDLDVTL-RPQSLDEFTGQAEARANLKIFIEAAKNRGEALDHVLFVGPPGLG 65 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 KTTLAQ++A+ELGVNFRSTS A + E RDVLFID Sbjct: 66 KTTLAQIMAKELGVNFRSTSALSSPSRRSRRAADQSRE-RDVLFID 110 >gi|207093215|ref|ZP_03241002.1| Holliday junction DNA helicase B [Helicobacter pylori HPKX_438_AG0C1] Length = 138 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 60/130 (46%), Positives = 88/130 (67%), Gaps = 3/130 (2%) Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262 + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++ + I AL L ++++GFD+ Sbjct: 1 IKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFDE 60 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322 DL YL+++A N G PVG+ TI+A + E IED+IEP+++ G+++RT +GR+ P Sbjct: 61 ADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP- 118 Query: 323 AWQHLGIDIP 332 H + IP Sbjct: 119 -KTHALLKIP 127 >gi|308189856|ref|YP_003922787.1| hypothetical protein MFE_02970 [Mycoplasma fermentans JER] gi|307624598|gb|ADN68903.1| hypothetical protein MFE_02970 [Mycoplasma fermentans JER] Length = 220 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 112/197 (56%) Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 VEEI+Y AMED+++D+++G +++ +++NL FTLI ATT++ LLT PL+DRFG RL Sbjct: 5 VEEIIYNAMEDYKIDIIIGPEGNSKVMRMNLKPFTLIGATTKINLLTQPLKDRFGFIARL 64 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 + Y +++ I++ + + IA S+GTPR+A LL+R+ DF+ Sbjct: 65 SQYNEKEIAKILENSEMVLNIKSERGVIPLIAKYSKGTPRVANHLLKRILDFSIQNKEDE 124 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 IT++ + L + +G + + YL ++ F I++I+ L+ RD + + Sbjct: 125 ITKKTTYSTFKHLELYDLGLGREHIEYLKVLNETFENKFAAIDSIAGVLNIDRDILIYEL 184 Query: 301 EPYMIQQGFIQRTPRGR 317 EP ++ I + PRGR Sbjct: 185 EPLLLYLKLIAKGPRGR 201 >gi|153864253|ref|ZP_01997214.1| Holliday junction DNA helicase RuvB [Beggiatoa sp. SS] gi|152146253|gb|EDN72787.1| Holliday junction DNA helicase RuvB [Beggiatoa sp. SS] Length = 121 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 54/106 (50%), Positives = 73/106 (68%) Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283 RLLRRVRD+A+V I + IA AL L +D G D +D + L I F GGPVGIE Sbjct: 4 RLLRRVRDYAQVRADGQINQTIAQQALNLLNVDTYGLDLMDRKLLLSIMEKFEGGPVGIE 63 Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 ++A +SE R IED+IEP+++QQGF++RT RGR++ +AWQH G+ Sbjct: 64 NLAAVISEERGTIEDVIEPFLLQQGFLKRTARGRVVTRLAWQHFGL 109 >gi|3248955|gb|AAD09937.1| Holliday junction DNA helicase RuvB [Coxiella burnetii] Length = 114 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/92 (48%), Positives = 61/92 (66%) Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 I IA AL L +D G D +D + L I + F GGPVGIE+++A +SE R IED+I Sbjct: 7 INESIAKEALDLLNVDIRGLDVMDRKLLETIIKKFQGGPVGIESLAAAISEERGTIEDVI 66 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 EPY+IQ+GFI RTPRGR+ + +QH + +P Sbjct: 67 EPYLIQEGFILRTPRGRIATELTYQHFKLPLP 98 >gi|261883772|ref|ZP_06007811.1| Holliday junction DNA helicase RuvB [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 99 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 44/99 (44%), Positives = 64/99 (64%) Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276 GT R+A RLL+RVRD+A+V I E+ AL L +D G D +D + + + F Sbjct: 1 GTQRLANRLLKRVRDYAQVHRDGRIKLELTQEALEMLIVDSHGLDNIDHKLMLNMIDRFK 60 Query: 277 GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 GGPVG++T++A + E +ED+ EPY++Q GFIQRTP+ Sbjct: 61 GGPVGLDTLAASIGEESATLEDVYEPYLLQIGFIQRTPK 99 >gi|323255374|gb|EGA39144.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 90 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 43/88 (48%), Positives = 58/88 (65%) Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305 A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED++EPY+I Sbjct: 1 AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLI 60 Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 QQGF+QRTPRGR+ AW H GI P Sbjct: 61 QQGFLQRTPRGRMATVRAWNHFGITPPE 88 >gi|169839550|ref|ZP_02872738.1| Holliday junction DNA helicase B [candidate division TM7 single-cell isolate TM7a] Length = 65 Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 42/64 (65%), Positives = 54/64 (84%) Query: 40 LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99 + +FI+AAK R E+LDH+L GPPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+ Sbjct: 2 MNIFIKAAKIRNESLDHILLYGPPGLGKTTLAGVIATEMGVNLKVTTGPVLEKAGDLAAI 61 Query: 100 LTNL 103 LT+L Sbjct: 62 LTSL 65 >gi|47094638|ref|ZP_00232270.1| holliday junction DNA helicase RuvB [Listeria monocytogenes str. 4b H7858] gi|47016988|gb|EAL07889.1| holliday junction DNA helicase RuvB [Listeria monocytogenes str. 4b H7858] Length = 84 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 39/77 (50%), Positives = 55/77 (71%) Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D + L I ++F GGPVG++TI+A + E R+ IED+ EPY++Q GF+QR Sbjct: 2 LQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQEPYLLQIGFLQR 61 Query: 313 TPRGRLLMPIAWQHLGI 329 TPRGR+ A+ HLGI Sbjct: 62 TPRGRIATETAYNHLGI 78 >gi|555267|gb|AAA59231.1| helicase [Norwalk virus] Length = 64 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 40/64 (62%), Positives = 50/64 (78%) Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TT++ ++A E+G N + T+GP I K GDL A+LT LE DVLFIDEIHRL+ +VEEILYP Sbjct: 1 TTMSMIIANEMGTNIKITTGPSIEKTGDLVAILTALEPGDVLFIDEIHRLNKVVEEILYP 60 Query: 128 AMED 131 AM D Sbjct: 61 AMGD 64 >gi|291277124|ref|YP_003516896.1| helicase-like protein [Helicobacter mustelae 12198] gi|290964318|emb|CBG40168.1| helicase-like protein [Helicobacter mustelae 12198] Length = 394 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 100/211 (47%), Gaps = 27/211 (12%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLLRP++ ++F GQ S VF ++ H F GPPG+GKTTLA++VA+EL Sbjct: 6 SLLRPKSFKDFVGQEHLFSKDSVFSRVLESGH--FPHSFFYGPPGVGKTTLARIVAKELE 63 Query: 80 VNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 + F +G A AL N + V+FIDE+HRLS +E L P ME+ Q Sbjct: 64 MPFLEFNGVDFALESLRCALKEYKNTLIKPVVFIDEVHRLSKNQQEFLLPVMENHQA--- 120 Query: 138 VGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 ++ A+T+ +LTN L+ R I + L+ + L+ I+Q+ Sbjct: 121 -----------------IILGASTQNPFSILTNALRSR-SILLELHPLKSHHLREILQKA 162 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 L +T +A + S G R LL Sbjct: 163 LDLYPCKITSDARVYLMDSSNGDARAMLHLL 193 >gi|239906458|ref|YP_002953199.1| putative ATPase [Desulfovibrio magneticus RS-1] gi|239796324|dbj|BAH75313.1| putative ATPase [Desulfovibrio magneticus RS-1] Length = 408 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 109/233 (46%), Gaps = 32/233 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE+F GQ S L + A + L +L GPPG GK+TLA ++AR G Sbjct: 15 IRPAKLEDFVGQAHVISRLTNMLAAPR-----LPSLLLFGPPGCGKSTLALILARAKGRP 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 + S P +AG LAAL ++ +++L +DE+HR S ++ P +E ++ L+ Sbjct: 70 YVRVSAP---EAG-LAALRELIKGKEILILDELHRFSKAQQDFFLPILETGEIVLLATTT 125 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 E PS + LSR ++ R+G LT+P L + +RGA+ Sbjct: 126 ENPSFSVTRQLLSRLHVL----RLGPLTHP-----------------QLMVLAERGAREA 164 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 G+A+ E+ IAM S G R L+ +E A R+ AL R Sbjct: 165 GMALAKESLETIAMLSSGDGRTLLNLVEYTAALSEDKRAPDELRKHLPEALAR 217 >gi|305432754|ref|ZP_07401913.1| ATPase [Campylobacter coli JV20] gi|304444151|gb|EFM36805.1| ATPase [Campylobacter coli JV20] Length = 393 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 115/256 (44%), Gaps = 48/256 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP+TL+E GQ E K FI K L H LF GP G GKTT A+VVA++ G++ Sbjct: 7 FRPKTLDEILGQQELVEVFKKFISMQK-----LPHSLFFGPAGCGKTTFARVVAKDFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 F G K DL ++ N ++ + ++FIDEIHRLS +E+L ME++ Sbjct: 62 FYEFDGGNF-KLEDLRKIIENYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENY------ 114 Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEI-----EDLKTIV 192 R +I A+T NP GI R +E +DL+ ++ Sbjct: 115 --------------RCIVIGASTE-----NPYFVLSSGIRSRSMLFEFKNLGQKDLELLL 155 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 +R + + D A E ++S R + + +FA V + K IT E + LR Sbjct: 156 ERVQQKIAFKIEDNAK-EFLLKS-----FDARAMLNLLEFALVLNEKEITLE--NLKKLR 207 Query: 253 LAIDKMGFDQLDLRYL 268 ++ G D Y+ Sbjct: 208 NGVNSEGVSSKDTHYI 223 >gi|291547110|emb|CBL20218.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Ruminococcus sp. SR1/5] Length = 440 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 10/130 (7%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+ + QE S LRPRTL+E GQ K+ A KA + L V+F GPPG GKT Sbjct: 9 SKTLDQESPLASRLRPRTLDEVVGQQHIVGKDKLLYRAIKA--DKLTSVIFYGPPGTGKT 66 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121 TLA+V+A +F + V K D+ A++ +D + +LFIDEIHR + Sbjct: 67 TLAKVIANTTSASFTQINATVAGKK-DMEAVVKQAQDDLGMYGKKTILFIDEIHRFNKGQ 125 Query: 122 EEILYPAMED 131 ++ L P +ED Sbjct: 126 QDYLLPFVED 135 >gi|260437226|ref|ZP_05791042.1| ATPase, AAA family [Butyrivibrio crossotus DSM 2876] gi|292810539|gb|EFF69744.1| ATPase, AAA family [Butyrivibrio crossotus DSM 2876] Length = 446 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 10/129 (7%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N+++E+ S +RP+TL+E GQ K+ A KA + L ++F GPPG GKTT Sbjct: 10 NNMTKEEPLASRMRPKTLDEVMGQKHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTT 67 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122 LA+V+A +FR + V K D+ ++ +D R +LF+DEIHR + + Sbjct: 68 LAKVIANTTSASFRQINATVAGKK-DMEDVVNGAKDIMASMGQRTILFVDEIHRFNKGQQ 126 Query: 123 EILYPAMED 131 + L P +ED Sbjct: 127 DYLLPYVED 135 >gi|169836550|ref|ZP_02869738.1| Holliday junction DNA helicase B [candidate division TM7 single-cell isolate TM7a] Length = 85 Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 37/76 (48%), Positives = 52/76 (68%) Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D G D+LD L I + GGPVGIET+S L E R IE++ EPY+++ GFI+RTP Sbjct: 1 MDDNGLDELDRNILLSIINVYNGGPVGIETLSLLLGEDRRTIEEVYEPYLVKIGFIKRTP 60 Query: 315 RGRLLMPIAWQHLGID 330 RGR++ + + HLGI+ Sbjct: 61 RGRVVTELGYNHLGIE 76 >gi|320528095|ref|ZP_08029260.1| recombination factor protein RarA [Solobacterium moorei F0204] gi|320131443|gb|EFW24008.1| recombination factor protein RarA [Solobacterium moorei F0204] Length = 446 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 17/179 (9%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD G S +++ ++ +RP TLEE GQ K+ A KA + L ++F Sbjct: 1 MDLFGYASEETKKKEEPLAARMRPSTLEEVVGQEHIIGKDKLLYRAIKA--DKLGSLIFY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDE 113 GPPG GKTTLAQV+A +FR + + K DL ++T+ + + +LFIDE Sbjct: 59 GPPGTGKTTLAQVIANSTSADFRQVNATIAGKK-DLEQVITHAIDLMSMYQKKTILFIDE 117 Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVG---EGP--SARSVKINLSRFTLIAATTRVGLLT 167 IHR + ++ L P +ED + +++G E P I+ SR + + T+ ++T Sbjct: 118 IHRFNKGQQDYLLPYVEDGTI-ILIGATTENPYFEVNQALISRSRIFQLKSLTKENIMT 175 >gi|255284508|ref|ZP_05349063.1| replication-associated recombination protein A [Bryantella formatexigens DSM 14469] gi|255264944|gb|EET58149.1| replication-associated recombination protein A [Bryantella formatexigens DSM 14469] Length = 438 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 11/144 (7%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + +N +++A + S LRPRTLEE GQ E K+ A KA + L ++F Sbjct: 1 MDLFDYMRQNTMEKEAPLASRLRPRTLEEVVGQQEIIGEGKLLYRAIKA--DKLGSLIFY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113 GPPG GKTTLA+V+A +F+ + V K D+ ++ +D + +LF+DE Sbjct: 59 GPPGTGKTTLAKVIANTTSADFKQINATVAGKK-DMEDVVKAAKDSLGMYGKKTILFVDE 117 Query: 114 IHRLSIIVEEILYPAMEDFQLDLM 137 IHR + ++ L P +ED L L+ Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILI 141 >gi|225574529|ref|ZP_03783139.1| hypothetical protein RUMHYD_02606 [Blautia hydrogenotrophica DSM 10507] gi|225038260|gb|EEG48506.1| hypothetical protein RUMHYD_02606 [Blautia hydrogenotrophica DSM 10507] Length = 439 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 86/191 (45%), Gaps = 41/191 (21%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP TLEE GQ K+ A KA + L ++F GPPG GKTTLA+V+A Sbjct: 20 SRLRPSTLEEVVGQTHIVGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTTLAKVIANTTS 77 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 NF + V K D+ A++ ++ + +LFIDEIHR + ++ L P +ED Sbjct: 78 ANFTQINATVAGKK-DMEAVIKQAQNDRGMFGKKTILFIDEIHRFNKGQQDYLLPFVED- 135 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG------IPIRLNFYEIE 186 LI ATT NP + G + L E E Sbjct: 136 -------------------GTIILIGATTE-----NPYFEVNGALLSRSVIFELKQLEKE 171 Query: 187 DLKTIVQRGAK 197 ++KT+++R K Sbjct: 172 EIKTLIRRAVK 182 >gi|308189834|ref|YP_003922765.1| hypothetical protein MFE_02740 [Mycoplasma fermentans JER] gi|307624576|gb|ADN68881.1| hypothetical protein MFE_02740 [Mycoplasma fermentans JER] Length = 89 Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 52/89 (58%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +LRP EF GQ + LK IE ++ R E LDH+LF GPPG GKT+LA ++A EL Sbjct: 1 MLRPANFFEFVGQEKLIYTLKTMIEGSRYRKEPLDHILFYGPPGTGKTSLASILANELDT 60 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVL 109 G ++ K D+ + N+++ +VL Sbjct: 61 KIHYLQGALLEKKSDILTVFANVKENEVL 89 >gi|213621617|ref|ZP_03374400.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 64 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/63 (52%), Positives = 47/63 (74%) Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D GFD +D + L + F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTP Sbjct: 2 VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 61 Query: 315 RGR 317 RGR Sbjct: 62 RGR 64 >gi|291562233|emb|CBL41049.1| ATPase related to the helicase subunit of the Holliday junction resolvase [butyrate-producing bacterium SS3/4] Length = 458 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 96/219 (43%), Gaps = 40/219 (18%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP TL+E GQ K+ A KA + L V+F GPPG GKTTLA+V+A Sbjct: 34 SRMRPTTLDEVVGQKHIIGKDKLLYRAIKA--DKLGSVIFYGPPGTGKTTLAKVIANTTS 91 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + V K D+ ++ N +D + +LF+DEIHR + ++ L P +ED Sbjct: 92 ARFEQINATVAGKK-DMEEIVKNAKDSIGMYGQKTILFVDEIHRFNKSQQDYLLPFVED- 149 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKT 190 TLI ATT + N L R I L E +D++ Sbjct: 150 -------------------GTITLIGATTENPYFEVNNALLSRSRI-FELKPLEKQDIRE 189 Query: 191 IVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIA 222 +V R G +TDEAA +A + G R A Sbjct: 190 LVMRAVYDTEKGMGTYSADITDEAADFLADVANGDARAA 228 >gi|255323655|ref|ZP_05364785.1| ATPase, AAA family [Campylobacter showae RM3277] gi|255299369|gb|EET78656.1| ATPase, AAA family [Campylobacter showae RM3277] Length = 394 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 92/207 (44%), Gaps = 38/207 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RPR+L+E GQ E K FIE K + H +F GP G GKT+ A+VVAR + + Sbjct: 8 FRPRSLDEICGQRELVGVFKKFIENKK-----IPHSIFYGPAGCGKTSFARVVARSMEYD 62 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 F G + K + +L N E+ + + FIDEIHRLS +E L ME+++ ++ Sbjct: 63 FYEFDGGNL-KIEEFRKILKNHENALSKPLFFIDEIHRLSKTQQEALLIPMENYRAAII- 120 Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-----EDLKTIVQ 193 G S + I LS GI R +E ED + +++ Sbjct: 121 --GASTENPYITLSS---------------------GIRSRSMLFEFKPLASEDFEKLLE 157 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR 220 R ++DEA + S G R Sbjct: 158 RVRDEVKFDISDEAKAYLVKSSGGDAR 184 >gi|292491563|ref|YP_003527002.1| ATPase AAA [Nitrosococcus halophilus Nc4] gi|291580158|gb|ADE14615.1| AAA ATPase central domain protein [Nitrosococcus halophilus Nc4] Length = 603 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 125/290 (43%), Gaps = 41/290 (14%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------- 107 +++F GP GLGKT LA+ VA+ LG+ + L + ++ Sbjct: 319 NLMFSGPGGLGKTELARRVAKALGLPLVDVPATTVRDVDSLLERINQTLQKNGQEPIEVG 378 Query: 108 -------------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 V+F+DE+H L + L M + + VG + V + Sbjct: 379 TDSGLKKMEYPPLVIFLDEVHELRRNADTFL--NMFEPKEKRAVG-----KKVVGDFKNA 431 Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214 TL+AATT GLL +P RF I I L Y E++ I++ + +G AV + +A R Sbjct: 432 TLLAATTTPGLLPSPFLSRFRI-IDLVPYTAEEVAAIIKPVFQKSGKAVEESFLVGLAKR 490 Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA-----IDKMGFDQLDLRYLT 269 R PR+A ++R + + + L R++ +D G QLD YL Sbjct: 491 GRLNPRVA---IQRAEEMLSHHLFDEKQYPLNEIGLERISTESWRVDTHGLRQLDHTYLK 547 Query: 270 MIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319 + GP G+ + + L R+ I ++EPY++Q I T +GR L Sbjct: 548 ALQ----SGPRGLSALVSLLPVEREEITQMVEPYLLQLEAISLTTKGREL 593 >gi|325660738|ref|ZP_08149366.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472812|gb|EGC76022.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium 4_1_37FAA] Length = 438 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 10/125 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP+TLEE GQ K+ A KA + L ++F GPPG GKTTLA+V+A Sbjct: 20 SRLRPKTLEEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTTLAKVIANTTS 77 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 NF + V K D+ ++ +D + +LF+DEIHR + ++ L P +ED Sbjct: 78 ANFTQINATVAGKK-DMEEVVRQAKDNQGMYGKKTILFVDEIHRFNKGQQDYLLPFVEDG 136 Query: 133 QLDLM 137 L L+ Sbjct: 137 TLILI 141 >gi|160937850|ref|ZP_02085209.1| hypothetical protein CLOBOL_02742 [Clostridium bolteae ATCC BAA-613] gi|158439289|gb|EDP17042.1| hypothetical protein CLOBOL_02742 [Clostridium bolteae ATCC BAA-613] Length = 445 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 10/135 (7%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 +++ +E S LRPRTL+E GQ K+ A +A + L ++F GPPG GKTT Sbjct: 17 KDMEKESPLASRLRPRTLDEVVGQQHIVGKDKLLYRAIQA--DKLGSIIFYGPPGTGKTT 74 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122 LA+V+A +FR + V K D+ ++ +D + +LF+DEIHR + + Sbjct: 75 LAKVIANTTSADFRQINATVAGKK-DMEEVVKEAKDNIGMYGRKTILFVDEIHRFNKGQQ 133 Query: 123 EILYPAMEDFQLDLM 137 + L P +ED L L+ Sbjct: 134 DYLLPFVEDGTLILI 148 >gi|291521790|emb|CBK80083.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Coprococcus catus GD/7] Length = 444 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 22/210 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRPRTL+E GQ K+ A KA + L ++ GPPG GKTT+A+V+A Sbjct: 20 SRLRPRTLDEIVGQQHILGRDKMLYRAIKA--DKLSSIILYGPPGTGKTTIAKVIANTTS 77 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + V K D+ ++ +D R +LF+DEIHR + ++ L P +ED Sbjct: 78 AAFTQINATVAGKK-DMEQVVQEAKDRMGMYGKRTILFVDEIHRFNKGQQDYLLPFVEDG 136 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 L +++G ++N + LI+ + L +D G+ IR Y+ E Sbjct: 137 TL-ILIGATTENPYFEVNGA---LISRSVIFELKPLSAED-IGVLIRRAVYDTE------ 185 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 RG G ++D+A +A S G R+A Sbjct: 186 -RGMGSYGAEISDDAVDFLADMSGGDARMA 214 >gi|315635453|ref|ZP_07890719.1| ATPase [Arcobacter butzleri JV22] gi|315480211|gb|EFU70878.1| ATPase [Arcobacter butzleri JV22] Length = 431 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 6/114 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +LE F GQ S K + K + + H+ F G PG GKTTLA+++A+E+G + Sbjct: 8 LRPTSLETFVGQSHIISKDKALYKLIKQKD--IPHLFFYGKPGTGKTTLAKIIAKEIGTD 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDF 132 + + I K DL + + + ++FIDE+HRLS +E+L P ME++ Sbjct: 66 YYYFNATSI-KVEDLRKVFDKYKGALIKPLIFIDEVHRLSKNQQEVLLPIMENY 118 >gi|331085539|ref|ZP_08334623.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407426|gb|EGG86928.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 438 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 10/125 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP+TLEE GQ K+ A KA + L ++F GPPG GKTTLA+V+A Sbjct: 20 SRLRPKTLEEVVGQHHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTTLAKVIANTTS 77 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 NF + V K D+ ++ +D + +LF+DEIHR + ++ L P +ED Sbjct: 78 ANFTQINATVAGKK-DMEEVVRQAKDNQGMYGKKTILFVDEIHRFNKGQQDYLLPFVEDG 136 Query: 133 QLDLM 137 L L+ Sbjct: 137 TLILI 141 >gi|154502582|ref|ZP_02039642.1| hypothetical protein RUMGNA_00395 [Ruminococcus gnavus ATCC 29149] gi|153796774|gb|EDN79194.1| hypothetical protein RUMGNA_00395 [Ruminococcus gnavus ATCC 29149] Length = 438 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 90/209 (43%), Gaps = 46/209 (22%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 + QE S +RP+TLEE GQ K+ A KA + L ++F GPPG GKTT Sbjct: 10 KTQEQESPLASRMRPQTLEEVVGQQHIIGKDKLLYRAIKA--DKLGSIIFYGPPGTGKTT 67 Query: 70 LAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 LA+V+A F+ + V K + LL + +LFIDEIHR + ++ Sbjct: 68 LAKVIAHTTSAEFKQINATVAGKKDMEQVVNEAKELLGMYRKKTILFIDEIHRFNKGQQD 127 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI----- 178 L P +ED TLI ATT NP + G I Sbjct: 128 YLLPFVED--------------------GTITLIGATTE-----NPYFEVNGALISRSSV 162 Query: 179 -RLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 L E ED++T+++R AV DE Sbjct: 163 FELKSLEKEDIRTLLKR-------AVYDE 184 >gi|295109221|emb|CBL23174.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Ruminococcus obeum A2-162] Length = 439 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 10/130 (7%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+ + +E S LRP TLEE GQ K+ A KA + L V+F GPPG GKT Sbjct: 9 SKTLDRESPLASRLRPTTLEEVVGQEHIVGKDKLLYRAIKA--DKLTSVIFYGPPGTGKT 66 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121 TLA+V+A NF + V K D+ ++ ++ + +LFIDEIHR + Sbjct: 67 TLAKVIAHTTSANFTQINATVAGKK-DMEQVVQEAQNNLGMYGRKTILFIDEIHRFNKGQ 125 Query: 122 EEILYPAMED 131 ++ L P +ED Sbjct: 126 QDYLLPFVED 135 >gi|157736320|ref|YP_001489003.1| recombination factor protein RarA [Arcobacter butzleri RM4018] gi|157698174|gb|ABV66334.1| ATPase, AAA family protein [Arcobacter butzleri RM4018] Length = 394 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 6/114 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP LE F GQ S K + K + + H+ F G PG GKTTLA+++A+E+G + Sbjct: 8 LRPTNLETFVGQSHIISKDKALYKLIKQKD--IPHLFFYGKPGTGKTTLAKIIAKEIGTD 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDF 132 + + I K DL + + + ++FIDE+HRLS +E+L P ME++ Sbjct: 66 YYYFNATSI-KVEDLRKVFDKYKGALIKPLIFIDEVHRLSKNQQEVLLPIMENY 118 >gi|210608530|ref|ZP_03287903.1| hypothetical protein CLONEX_00082 [Clostridium nexile DSM 1787] gi|210152981|gb|EEA83987.1| hypothetical protein CLONEX_00082 [Clostridium nexile DSM 1787] Length = 443 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 11/144 (7%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + N +Q+++ + S +RP+TLEE GQ K+ A KA + L ++F Sbjct: 1 MDLFDYMRENAAQKESPLASRMRPKTLEEVVGQQHIIGQDKLLYRAIKA--DKLSSIIFY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113 GPPG GKTTLA+V+A F + V K D+ ++ +D + +LF+DE Sbjct: 59 GPPGTGKTTLAKVIANTTSAQFTQINATVAGKK-DMEEVVRKAKDNLGMYGQKTILFVDE 117 Query: 114 IHRLSIIVEEILYPAMEDFQLDLM 137 IHR + ++ L P +ED L L+ Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILI 141 >gi|312143966|ref|YP_003995412.1| AAA ATPase central domain protein [Halanaerobium sp. 'sapolanicus'] gi|311904617|gb|ADQ15058.1| AAA ATPase central domain protein [Halanaerobium sp. 'sapolanicus'] Length = 443 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/144 (38%), Positives = 76/144 (52%), Gaps = 18/144 (12%) Query: 8 LSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 L N QE D L +RPR LEEF GQ + K+ A KA + L ++F GPPG Sbjct: 3 LFENSDQEKKDQPLAYRMRPRNLEEFFGQKDIVGENKLLSRAIKA--DRLRSLIFYGPPG 60 Query: 65 LGKTTLAQVVARELGVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115 GKT+LAQV+A + F TSG VI KA +L + +LFIDEIH Sbjct: 61 TGKTSLAQVIANQTKAEFIKLNAVTSGVKDIREVIKKAKSNRSLYNT---KTILFIDEIH 117 Query: 116 RLSIIVEEILYPAMEDFQLDLMVG 139 R + ++ L P++E+ L +M+G Sbjct: 118 RFNKSQQDALLPSVENGTL-IMIG 140 >gi|152989818|ref|YP_001355540.1| recombination factor protein RarA [Nitratiruptor sp. SB155-2] gi|151421679|dbj|BAF69183.1| ATPase, AAA family [Nitratiruptor sp. SB155-2] Length = 391 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 99/206 (48%), Gaps = 35/206 (16%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP++LEEF GQ + + F + K RA L H F GPPG GKTTLA++VA+E +F Sbjct: 5 RPKSLEEFIGQRQLLAPEAPFYKLLKQRA--LPHSFFFGPPGTGKTTLARIVAKEYESDF 62 Query: 83 RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + + K ++ ++ + + +LFIDE+HRLS +E+L P ME + L++G Sbjct: 63 FELNATSL-KIEEIRKIVHRYKGSFIKPLLFIDEVHRLSKNQQEVLLPIMEK-EEALILG 120 Query: 140 ---EGPSARSVKINLSRFTLIAATTRVGLLTN--PLQDRFGIPIRLNFYEIEDLKTIVQR 194 E P F+L AA +L PL + EDL +V R Sbjct: 121 ASTENPF----------FSLTAAIRSRSMLFEFRPLNE-------------EDLNQLVHR 157 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPR 220 + ++ +EA I S+G R Sbjct: 158 VCQNEECSIDEEAKEYIIRISQGDAR 183 >gi|1777932|gb|AAC45724.1| RuvB' [Treponema pallidum] Length = 82 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 34/59 (57%), Positives = 46/59 (77%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LRPR L++F GQ + NL++FI+AA+ R E+LDH+ +GPPG+GKTTLA + A ELGV Sbjct: 24 LRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLIGPPGVGKTTLAHITACELGV 82 >gi|332704198|ref|ZP_08424286.1| AAA ATPase central domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332554347|gb|EGJ51391.1| AAA ATPase central domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 426 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 96/213 (45%), Gaps = 32/213 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+EF GQ S L+ + RA+ L +L GPPG GK+TLA ++AR G Sbjct: 19 IRPADLDEFVGQRHLKSKLEALL-----RAKRLPSLLLFGPPGSGKSTLALLLARSTGRP 73 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 +R S P LA L L D+L +DE+HR S ++ P +E+ ++ L+ Sbjct: 74 YRRVSAPETG----LAELRKQLSGVDLLILDEVHRYSKAQQDFFLPQLENGEVTLIATTT 129 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 E PS + LSR ++ R+ L +P DL I RG K Sbjct: 130 ENPSFSVTRQLLSRLHVL----RLMPLADP-----------------DLLEITNRGLKAL 168 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 L + +E+ +A S G R LL V + Sbjct: 169 NLEIPEESRRLVAGVSGGDARTLLNLLEYVAEL 201 >gi|296271689|ref|YP_003654320.1| AAA ATPase central domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296095864|gb|ADG91814.1| AAA ATPase central domain protein [Arcobacter nitrofigilis DSM 7299] Length = 393 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 6/117 (5%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S+LRP +L++F GQ S KV + + E + H+ F G PG GKTTLA+++A+ + Sbjct: 6 SILRPNSLQDFVGQNHIISKNKVLYKLI-IKGE-IPHLFFYGKPGTGKTTLAKIIAKTIN 63 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++ + + K DL + + ++ + ++FIDE+HRLS +E+L P ME++Q Sbjct: 64 TDYFYFNATSL-KIEDLRKVFSKYDNSLIKPIVFIDEVHRLSKNQQEVLLPIMENYQ 119 >gi|167758834|ref|ZP_02430961.1| hypothetical protein CLOSCI_01177 [Clostridium scindens ATCC 35704] gi|167663574|gb|EDS07704.1| hypothetical protein CLOSCI_01177 [Clostridium scindens ATCC 35704] Length = 438 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 88/198 (44%), Gaps = 39/198 (19%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 +N+ +E S LRP TLEE GQ K+ A KA + L ++F GPPG GKTT Sbjct: 10 KNLDKEAPLASRLRPSTLEEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTT 67 Query: 70 LAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 LA+V+A F + V K G L + + +LF+DEIHR + ++ Sbjct: 68 LAKVIANTTSAVFTQINATVAGKKDMEEVVGRAKETLGMYQKKTILFVDEIHRFNKSQQD 127 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI-RLNF 182 L P +ED LI ATT NP + G I R + Sbjct: 128 YLLPFVED--------------------GTIILIGATTE-----NPYFEVNGALISRSSI 162 Query: 183 YEI-----EDLKTIVQRG 195 +E+ ED+KT+++R Sbjct: 163 FELHPLDKEDIKTVIRRA 180 >gi|153814369|ref|ZP_01967037.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756] gi|317500083|ref|ZP_07958318.1| replication-associated recombination protein A [Lachnospiraceae bacterium 8_1_57FAA] gi|331087693|ref|ZP_08336619.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848765|gb|EDK25683.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756] gi|316898568|gb|EFV20604.1| replication-associated recombination protein A [Lachnospiraceae bacterium 8_1_57FAA] gi|330409674|gb|EGG89110.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium 3_1_46FAA] Length = 438 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 10/119 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+TL+E GQ K+ A KA + L V+F GPPG GKTTLA+V+A Sbjct: 20 SRMRPKTLDEVVGQQHIIGKDKLLYRAIKA--DKLSSVIFYGPPGTGKTTLAKVIANTTS 77 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F+ + V K D+ ++ +D R +LFIDEIHR + ++ L P +ED Sbjct: 78 AEFKQINATVAGKK-DMEEVVKEAKDMQGMYGKRTILFIDEIHRFNKGQQDYLLPFVED 135 >gi|148983663|ref|ZP_01816982.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP3-BS71] gi|147923810|gb|EDK74922.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae SP3-BS71] Length = 83 Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 33/78 (42%), Positives = 51/78 (65%) Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312 L +D G D +D + L + + GGPVG+ T+S ++E R+ +ED+ EPY+IQ+GFI R Sbjct: 2 LDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMR 61 Query: 313 TPRGRLLMPIAWQHLGID 330 T GR+ A++HLG + Sbjct: 62 TRSGRVATAKAYEHLGYE 79 >gi|169836410|ref|ZP_02869598.1| Holliday junction DNA helicase B [candidate division TM7 single-cell isolate TM7a] Length = 62 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/49 (67%), Positives = 41/49 (83%) Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 +A V+A E+G N R TSGP I +AGDLA++LTNL+D D+LFIDEIHRLS Sbjct: 1 MASVIANEMGTNLRVTSGPAIERAGDLASILTNLQDNDILFIDEIHRLS 49 >gi|153809776|ref|ZP_01962444.1| hypothetical protein RUMOBE_00157 [Ruminococcus obeum ATCC 29174] gi|149833954|gb|EDM89034.1| hypothetical protein RUMOBE_00157 [Ruminococcus obeum ATCC 29174] Length = 427 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 10/130 (7%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+ + +E S LRP TL+E GQ K+ A KA + L V+F GPPG GKT Sbjct: 9 SKTLDRESPLASRLRPTTLDEVVGQEHIVGKDKLLYRAIKA--DKLTSVIFYGPPGTGKT 66 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIV 121 TLA+V+A +F + V K D+ ++ +DR +LFIDEIHR + Sbjct: 67 TLAKVIANTTSASFTQINATVAGKK-DMEEVVKEAQDRLGMYGKKTILFIDEIHRFNKGQ 125 Query: 122 EEILYPAMED 131 ++ L P +ED Sbjct: 126 QDYLLPFVED 135 >gi|290769987|gb|ADD61754.1| putative protein [uncultured organism] Length = 440 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 94/221 (42%), Gaps = 48/221 (21%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP TL+E GQ K+ A KA + L V+F GPPG GKTTLA+++A Sbjct: 22 LRPETLDEMVGQSHIIGKDKLLYRAIKA--DKLSSVIFYGPPGTGKTTLARIIANTTSAE 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + V K D+ ++ +D + +LF+DEIHR + ++ L P +ED Sbjct: 80 FNQVNATVAGKK-DMEEVVAKAKDNLGMYGRKTILFVDEIHRFNKGQQDYLLPFVED--- 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG------IPIRLNFYEIEDL 188 LI ATT NP + G I L E ED+ Sbjct: 136 -----------------GTIILIGATTE-----NPYFEVNGALISRSIIFELKPLEKEDI 173 Query: 189 KTIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIA 222 KTI++R G A+ D+A +A S G R A Sbjct: 174 KTIIKRAVYDEKKGMGSYNAAIDDDALEFLADISNGDARNA 214 >gi|225386739|ref|ZP_03756503.1| hypothetical protein CLOSTASPAR_00487 [Clostridium asparagiforme DSM 15981] gi|225047150|gb|EEG57396.1| hypothetical protein CLOSTASPAR_00487 [Clostridium asparagiforme DSM 15981] Length = 443 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 10/125 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP+TL+E GQ K+ A KA + L ++F GPPG GKTTLA+V+A Sbjct: 22 SRLRPKTLDEVVGQQHIVGRDKLLYRAIKA--DKLGSIIFYGPPGTGKTTLAKVIANTTS 79 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 +FR + V K D+ ++ +D + +LF+DEIHR + ++ L P +ED Sbjct: 80 ADFRQINATVAGKK-DMEEVVHAAKDNMGMYGKKTILFVDEIHRFNKGQQDYLLPFVEDG 138 Query: 133 QLDLM 137 L L+ Sbjct: 139 TLILI 143 >gi|223038447|ref|ZP_03608741.1| ATPase, AAA family protein [Campylobacter rectus RM3267] gi|222880304|gb|EEF15391.1| ATPase, AAA family protein [Campylobacter rectus RM3267] Length = 394 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RPR+L+E GQ E K FIE K + H +F GP G GKT+ A+VVAR + + Sbjct: 8 FRPRSLDEICGQRELVGVFKKFIENKK-----IPHSIFYGPAGCGKTSFARVVARSMEYD 62 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F G + K + +L N E+ + + FIDEIHRLS +E L ME+++ Sbjct: 63 FYEFDGGNL-KIEEFRKILKNHENALSKPLFFIDEIHRLSKTQQEALLIPMENYR 116 >gi|166031126|ref|ZP_02233955.1| hypothetical protein DORFOR_00811 [Dorea formicigenerans ATCC 27755] gi|166028973|gb|EDR47730.1| hypothetical protein DORFOR_00811 [Dorea formicigenerans ATCC 27755] Length = 439 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 90/199 (45%), Gaps = 41/199 (20%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 +N+ QE S LRP TLEE GQ K+ A KA + L ++F GPPG GKTT Sbjct: 10 KNMDQEAPLASRLRPTTLEEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTT 67 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVE 122 LA+V+A F + V K D+ ++ + + +LF+DEIHR + + Sbjct: 68 LAKVIAHTTSAEFTQINATVAGKK-DMEEVVQKAKETLGMYQKKTILFVDEIHRFNKGQQ 126 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI-RLN 181 + L P +ED LI ATT NP + G I R + Sbjct: 127 DYLLPFVED--------------------GTIILIGATTE-----NPYFEVNGALISRSS 161 Query: 182 FYEI-----EDLKTIVQRG 195 +E+ ED+KT+++R Sbjct: 162 IFELHPLEKEDIKTLLKRA 180 >gi|239628694|ref|ZP_04671725.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518840|gb|EEQ58706.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 438 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 10/125 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRPRTL+E GQ K+ A KA + L ++F GPPG GKTTLA+V+A Sbjct: 20 SRLRPRTLDEVVGQQHIVGVDKLLYRAIKA--DKLGSIIFYGPPGTGKTTLAKVIANTTS 77 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 +F+ + V K D+ ++ +D + +LF+DEIHR + ++ L P +ED Sbjct: 78 ADFKQINATVAGKK-DMEEVVKGAKDNMGMYGRKTILFVDEIHRFNKGQQDYLLPFVEDG 136 Query: 133 QLDLM 137 L L+ Sbjct: 137 TLILI 141 >gi|227549156|ref|ZP_03979205.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078716|gb|EEI16679.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM 44291] Length = 107 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 49/78 (62%) Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314 +D++G D+LD L + R GGGPVG+ T++ + E +E++ EPY+++ G + RT Sbjct: 20 VDELGLDRLDRAVLNSLIRGHGGGPVGVSTLAIAVGEEPGTVEEVCEPYLVRAGLMSRTG 79 Query: 315 RGRLLMPIAWQHLGIDIP 332 RGR+ AW H+G+ P Sbjct: 80 RGRVATAAAWHHVGVTPP 97 >gi|125973135|ref|YP_001037045.1| recombination factor protein RarA [Clostridium thermocellum ATCC 27405] gi|256003930|ref|ZP_05428916.1| AAA ATPase central domain protein [Clostridium thermocellum DSM 2360] gi|281417327|ref|ZP_06248347.1| AAA ATPase central domain protein [Clostridium thermocellum JW20] gi|125713360|gb|ABN51852.1| Recombination protein MgsA [Clostridium thermocellum ATCC 27405] gi|255992058|gb|EEU02154.1| AAA ATPase central domain protein [Clostridium thermocellum DSM 2360] gi|281408729|gb|EFB38987.1| AAA ATPase central domain protein [Clostridium thermocellum JW20] gi|316940639|gb|ADU74673.1| AAA ATPase central domain protein [Clostridium thermocellum DSM 1313] Length = 432 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 14/146 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEEF GQ E K+ KA + + ++ GPPG GKT+LA+++A N Sbjct: 12 MRPRTLEEFYGQEEIVGEGKLLNRMIKA--DRISSIILYGPPGTGKTSLARIIANSTKAN 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + V A D+ ++++ ++ R VLFIDEIHR + ++ L P +ED + Sbjct: 70 FEKLNA-VTAGVADIKRIVSDTQNPILNPKGRTVLFIDEIHRFNKSQQDALLPYVEDGTI 128 Query: 135 DLMVG---EGPSARSVKINLSRFTLI 157 ++VG E P K +SR ++ Sbjct: 129 -ILVGATTENPFFEVNKALISRSSVF 153 >gi|304570584|ref|YP_388490.2| recombination factor protein RarA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 428 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 106/242 (43%), Gaps = 38/242 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE F GQ L+ + A++ L +LF GPPG GK+T+A ++AR G Sbjct: 32 IRPADLEGFVGQTHLRDRLRALMNASR-----LPSLLFFGPPGCGKSTIALLLARNTGQK 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-- 139 + S P +AG L L +L +L +DE+HR S ++ P +E ++ L+ Sbjct: 87 YIRISAP---EAG-LQQLRKSLAGVRILVLDELHRFSKAQQDFFLPVLESGEVTLLASTT 142 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 E PS + LSR + +RL DL T+ +RGA+ Sbjct: 143 ENPSFSVTRQLLSRMHV---------------------LRLKPLAHSDLLTLARRGAEAQ 181 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI--DK 257 G A+ D+ +A + G R L+ V E + T E AAL L + DK Sbjct: 182 GAALKDDVCEMLATVAHGDARTLLNLVEYVAGLPE----EKQTPEAVKAALPELVMRHDK 237 Query: 258 MG 259 G Sbjct: 238 DG 239 >gi|242310186|ref|ZP_04809341.1| recombination factor protein RarA [Helicobacter pullorum MIT 98-5489] gi|239523483|gb|EEQ63349.1| recombination factor protein RarA [Helicobacter pullorum MIT 98-5489] Length = 388 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 6/114 (5%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ ++F GQ F++ K+ + H F GPPG GKTT A ++A ELG F Sbjct: 9 RPKNFQQFIGQKHIFGENAPFMQLLKSGK--IPHSFFFGPPGSGKTTAATLIANELGYPF 66 Query: 83 RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + + K+ DL +L N ++ + ++FIDE+HRL+ +E+L P ME+ Q Sbjct: 67 YNLNATSF-KSEDLRNILKNHQNTLQKPLIFIDEVHRLNKAQQELLLPIMENHQ 119 >gi|294506999|ref|YP_003571057.1| ATPase, AAA family protein [Salinibacter ruber M8] gi|294343327|emb|CBH24105.1| ATPase, AAA family protein [Salinibacter ruber M8] Length = 456 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ K+ A +A + + VLF GPPG GKTTLA+++AR + Sbjct: 23 MRPRTLDEFVGQEHFIGEGKLLRRAIEA--DRVTSVLFCGPPGTGKTTLARIIARTTEAH 80 Query: 82 FRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + V++ DL L + + R +LFIDE+HR + ++ L P +ED Sbjct: 81 FTSLNA-VLSGVADLREAVQKAKNRLKHHQTRTILFIDEVHRFNTAQQDALLPHVED 136 >gi|309791858|ref|ZP_07686343.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6] gi|308226098|gb|EFO79841.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6] Length = 486 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 78/150 (52%), Gaps = 17/150 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEE+ GQ K+ A + L ++ GPPG GKTTLA++VA + Sbjct: 28 MRPRTLEEYAGQQHVVGEGKLLRRAITG--DQLFSIILWGPPGSGKTTLARIVASSTNAH 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V A DL A++ +D R VLFIDEIHR + ++ + P +ED + Sbjct: 86 FTQVSA-VNAGVADLRAVIQEAQDRLGMYQQRTVLFIDEIHRFNKGQQDAVLPYVEDGTI 144 Query: 135 DLMVGEGPSARSVKIN---LSR---FTLIA 158 +++G S ++N LSR FTL A Sbjct: 145 -ILIGATTENPSFEVNSALLSRARVFTLQA 173 >gi|153854634|ref|ZP_01995884.1| hypothetical protein DORLON_01879 [Dorea longicatena DSM 13814] gi|149752738|gb|EDM62669.1| hypothetical protein DORLON_01879 [Dorea longicatena DSM 13814] Length = 439 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 101/223 (45%), Gaps = 51/223 (22%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 +N+ +E S LRP TLEE GQ K+ A KA + L V+F GPPG GKTT Sbjct: 10 QNMEKEAPLASRLRPTTLEEVVGQQHIIGKDKLLYRAIKA--DKLSSVIFYGPPGTGKTT 67 Query: 70 LAQVVARELGVNFR----STSGP-----VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 LA+V+A F +T+G VI KA ++ + + +LF+DEIHR + Sbjct: 68 LAKVIANTTSAEFTQINATTAGKKDMEEVINKAKEMQGM---YRKKTILFVDEIHRFNKG 124 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI-R 179 ++ L P +ED LI ATT NP + G + R Sbjct: 125 QQDYLLPFVED--------------------GTIILIGATTE-----NPYFEVNGALLSR 159 Query: 180 LNFYEI-----EDLKTIVQRGAKLT--GL----AVTDEAACEI 211 + +E+ ED+KT++ R T G+ AV DE A E Sbjct: 160 SSIFELQPLAKEDIKTLITRAVYDTVKGMGSYQAVIDEDALEF 202 >gi|229828714|ref|ZP_04454783.1| hypothetical protein GCWU000342_00780 [Shuttleworthia satelles DSM 14600] gi|229793308|gb|EEP29422.1| hypothetical protein GCWU000342_00780 [Shuttleworthia satelles DSM 14600] Length = 447 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 67/133 (50%), Gaps = 12/133 (9%) Query: 8 LSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 +RN +QE S LRP LEE GQ K+ A KA + L V+F GPPG Sbjct: 6 YARNKNQEHESPLASRLRPTCLEEVVGQEHIIGEDKLLYRAIKA--DKLSSVIFYGPPGT 63 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118 GKTTLA+V+A +FR + K D+ + +D + +LFIDEIHR + Sbjct: 64 GKTTLARVIANTTSADFRQINATTAGKK-DMQEAVEAAKDTLGMYGKKTILFIDEIHRFN 122 Query: 119 IIVEEILYPAMED 131 ++ L P +ED Sbjct: 123 KGQQDYLLPYVED 135 >gi|283851952|ref|ZP_06369228.1| AAA ATPase central domain protein [Desulfovibrio sp. FW1012B] gi|283572676|gb|EFC20660.1| AAA ATPase central domain protein [Desulfovibrio sp. FW1012B] Length = 408 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 36/213 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L +F GQ S L+ + A + L +L GPPG GK+TLA ++AR G Sbjct: 15 IRPQSLTDFVGQTHVISRLETMLAAPR-----LPSLLLFGPPGCGKSTLALILARAKGRP 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 + S P +AG LA L ++ +++L +DE+HR S ++ P +E ++ L+ Sbjct: 70 YVRVSAP---EAG-LATLRELIKGKEILILDELHRFSKAQQDFFLPLLETGEMVLLATTT 125 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 E PS + LSR + +RL +L + +RGAK Sbjct: 126 ENPSFSVTRQLLSRLHV---------------------LRLRPLSHGELMLLAERGAKAA 164 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 GL + E+ IA+ S G GR L + +F Sbjct: 165 GLDLARESLDAIALLSSGD----GRTLLNLVEF 193 >gi|266621439|ref|ZP_06114374.1| replication-associated recombination protein A [Clostridium hathewayi DSM 13479] gi|288866879|gb|EFC99177.1| replication-associated recombination protein A [Clostridium hathewayi DSM 13479] Length = 444 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 20/143 (13%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD+E L+ S LRP TL+E GQ K+ A KA + L V+F G Sbjct: 12 MDKESPLA----------SRLRPATLDEVVGQQHIIGKDKLLYRAIKA--DKLGSVIFYG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114 PPG GKTTLA+V+A +F+ + V K D+ ++ D + +LF+DEI Sbjct: 60 PPGTGKTTLAKVIANTTSADFKQINATVAGKK-DMEEIVKEARDSLGMFGRKTILFVDEI 118 Query: 115 HRLSIIVEEILYPAMEDFQLDLM 137 HR + ++ L P +ED L L+ Sbjct: 119 HRFNKGQQDYLLPFVEDGTLTLI 141 >gi|313888444|ref|ZP_07822111.1| ATPase, AAA family [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845473|gb|EFR32867.1| ATPase, AAA family [Peptoniphilus harei ACS-146-V-Sch2b] Length = 433 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 94/199 (47%), Gaps = 34/199 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEEF GQ K K+ + L VLF GPPG+GKTTLA+++AR N Sbjct: 22 MRPRTLEEFFGQDHIIGEGKYLSRLIKS--DRLTSVLFYGPPGVGKTTLAEIIARTTNKN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V + +L +L ED ++FIDEIHR + ++ L P +E + Sbjct: 80 FVKLSA-VTSNLKELREVLAKAEDSMKFDNVSTIVFIDEIHRFNKSQQDALLPFVERGVI 138 Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK--- 189 L+ E P + LSR +I +PL+D+ ++ED+ Sbjct: 139 SLIGATTENPYFEVNRALLSRMQIIN--------LHPLEDK----------DLEDMMYKA 180 Query: 190 -TIVQRGAKLTGLAVTDEA 207 + +RG + +T+EA Sbjct: 181 LSDKERGLGKKNIVITEEA 199 >gi|167912491|ref|ZP_02499582.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 112] Length = 77 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 43/58 (74%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 S E+A LRPR L+E+ GQ + L++FIEAAK R+EALDHVL GPPGLGKTTL Sbjct: 20 SHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTL 77 >gi|83814895|ref|YP_445120.1| recombination factor protein RarA [Salinibacter ruber DSM 13855] gi|83756289|gb|ABC44402.1| ATPase, AAA family protein [Salinibacter ruber DSM 13855] Length = 456 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ K+ A +A + + VLF GPPG GKTTLA+++AR + Sbjct: 23 MRPRTLDEFVGQEHFIGEGKLLRRAIEA--DRVTSVLFCGPPGTGKTTLARIIARTTEAH 80 Query: 82 FRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + V++ DL L + + R +LFIDE+HR + ++ L P +ED Sbjct: 81 FTSLNA-VLSGVTDLREAIQKAKNRLKHHQTRTILFIDEVHRFNTAQQDALLPHVED 136 >gi|313904153|ref|ZP_07837532.1| AAA ATPase central domain protein [Eubacterium cellulosolvens 6] gi|313470955|gb|EFR66278.1| AAA ATPase central domain protein [Eubacterium cellulosolvens 6] Length = 488 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 10/134 (7%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E + ++N E S +RP TLEE GQ ++ A KA + L ++F GPPG Sbjct: 5 EYMATQNKENESPLASRMRPETLEEVVGQEHIIGKGRMLYRAIKA--DKLSSIIFYGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRL 117 GKTTLA+V+A F + K D+ A + ++R +LFIDEIHR Sbjct: 63 TGKTTLARVIANTTSAEFAQMNATTSGKK-DMEAAVKEAQNRRGMYGKKTILFIDEIHRF 121 Query: 118 SIIVEEILYPAMED 131 + ++ L P +ED Sbjct: 122 NKGQQDFLLPYVED 135 >gi|238917273|ref|YP_002930790.1| putative ATPase [Eubacterium eligens ATCC 27750] gi|238872633|gb|ACR72343.1| putative ATPase [Eubacterium eligens ATCC 27750] Length = 455 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 107/243 (44%), Gaps = 49/243 (20%) Query: 1 MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 +MD + N ++ +++ LRP TLEE GQ K+ A KA + L V+F Sbjct: 15 IMDLFEYMRENNKNNESPLAMRLRPETLEEMVGQSHIVGKDKLLYRAIKA--DKLSSVIF 72 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112 GPPG GKTTLA+++A F + V K D+ ++ +D + +LF+D Sbjct: 73 YGPPGTGKTTLARIIANTTSAEFCQVNATVAGKK-DMEEVVAKAKDNLGMYGRKTILFVD 131 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 EIHR + ++ L P +ED LI ATT NP + Sbjct: 132 EIHRFNKGQQDYLLPFVED--------------------GTIILIGATTE-----NPYFE 166 Query: 173 RFG------IPIRLNFYEIEDLKTIVQRGA--KLTGL----AVTDEAACE-IAMRSRGTP 219 G I L E +D+KTI++R + G+ AV D+ A E +A S G Sbjct: 167 VNGALISRSIIFELKPLEKDDIKTIIKRAVYDEKKGMGSYKAVIDDDALEFLADISNGDA 226 Query: 220 RIA 222 R A Sbjct: 227 RNA 229 >gi|323486280|ref|ZP_08091606.1| hypothetical protein HMPREF9474_03357 [Clostridium symbiosum WAL-14163] gi|323693929|ref|ZP_08108116.1| replication-associated recombination protein A [Clostridium symbiosum WAL-14673] gi|323400390|gb|EGA92762.1| hypothetical protein HMPREF9474_03357 [Clostridium symbiosum WAL-14163] gi|323502026|gb|EGB17901.1| replication-associated recombination protein A [Clostridium symbiosum WAL-14673] Length = 440 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 12/146 (8%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + N +++A + S LRP TL+E GQ K+ A KA + L ++F Sbjct: 1 MDLFDYMRSNTMEKEAPLASRLRPATLDEVVGQKHIIGKDKLLYRAIKA--DKLGSIIFY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113 GPPG GKTTLA+V+A F+ + V K D+ ++ +D + +LF+DE Sbjct: 59 GPPGTGKTTLAKVIAGTTSARFKQLNATVAGKK-DMEEVVQEAKDALGMYGQKTILFVDE 117 Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVG 139 IHR + ++ L P +ED L L++G Sbjct: 118 IHRFNKSQQDYLLPFVEDGTL-LLIG 142 >gi|329298645|ref|ZP_08255981.1| Holliday junction DNA helicase RuvB [Plautia stali symbiont] Length = 62 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 274 NFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 F GGPVG++ ++A + E R+ IED+IEP++IQQG IQRTPRGR+ A++H GI Sbjct: 3 KFMGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGLIQRTPRGRMATQHAYKHFGI 58 >gi|152993934|ref|YP_001359655.1| recombination factor protein RarA [Sulfurovum sp. NBC37-1] gi|151425795|dbj|BAF73298.1| ATPase, AAA family [Sulfurovum sp. NBC37-1] Length = 393 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 64/115 (55%), Gaps = 12/115 (10%) Query: 23 RPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP+TL+E GQ L+ IEA +AL H+ GPPG GKTTLA+++A +LG Sbjct: 9 RPKTLDEMVGQRHLLGEEAPLRKLIEA-----DALPHIFLYGPPGCGKTTLARIIATQLG 63 Query: 80 VNFRSTSGPVIAKAGDLAALL---TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + + K DL + N + ++FIDE+HRLS +E+L P ME+ Sbjct: 64 RPFYEMNATTL-KIDDLRKIFKEYANALQKPLIFIDEVHRLSKNQQEVLLPFMEN 117 >gi|253580175|ref|ZP_04857442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848694|gb|EES76657.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 439 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 10/130 (7%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S+ + QE S LRP TL+E GQ + A KA + L V+F GPPG GKT Sbjct: 9 SKTLDQESPLASRLRPTTLDEVVGQQHIIGKNTLLYRAIKA--DKLTSVIFYGPPGTGKT 66 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121 TLA+V+A F + V K D+ A++ + + +LFIDEIHR + Sbjct: 67 TLAKVIANTTSAEFTQINATVAGKK-DMEAVVKEAQQNLGMYGKKTILFIDEIHRFNKGQ 125 Query: 122 EEILYPAMED 131 ++ L P +ED Sbjct: 126 QDYLLPFVED 135 >gi|225568599|ref|ZP_03777624.1| hypothetical protein CLOHYLEM_04676 [Clostridium hylemonae DSM 15053] gi|225162527|gb|EEG75146.1| hypothetical protein CLOHYLEM_04676 [Clostridium hylemonae DSM 15053] Length = 438 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 10/135 (7%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 +N+ E S LRP TL+E GQ K+ A KA + L ++F GPPG GKTT Sbjct: 10 KNMDNEAPLASRLRPATLDEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTT 67 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVE 122 LA+V+A F + V K D+ ++ + + R +LF+DEIHR + + Sbjct: 68 LAKVIANTTSAEFTQINATVAGKK-DMEEVVKHAKELQGMYQKRTILFVDEIHRFNKGQQ 126 Query: 123 EILYPAMEDFQLDLM 137 + L P +ED L L+ Sbjct: 127 DYLLPFVEDGTLILI 141 >gi|291457478|ref|ZP_06596868.1| replication-associated recombination protein A [Bifidobacterium breve DSM 20213] gi|291381313|gb|EFE88831.1| replication-associated recombination protein A [Bifidobacterium breve DSM 20213] Length = 459 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 96/217 (44%), Gaps = 40/217 (18%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPRTL+E GQ + ++ A+K A V+ GPPG+GKTTLA +VA + Sbjct: 24 MRPRTLDEVIGQTQVLGQGSPLHRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +LT +R VLFIDE+HR S ++ L PA+E Sbjct: 84 SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 142 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + + + E PS +K LSR + ++L E L Sbjct: 143 NRDVTFIGATTENPSFSVIKPLLSRSVV---------------------VKLESLEPNQL 181 Query: 189 KTIVQRG-AKLTGL----AVTDEAACEIAMRSRGTPR 220 +VQR A GL TDEA +I + G R Sbjct: 182 TELVQRALADERGLKGEVKATDEAVADIVRMAGGDAR 218 >gi|332981519|ref|YP_004462960.1| AAA ATPase central domain-containing protein [Mahella australiensis 50-1 BON] gi|332699197|gb|AEE96138.1| AAA ATPase central domain protein [Mahella australiensis 50-1 BON] Length = 444 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEEF GQ + ++ A KA + L V+F GPPG GKTTLA+V+A + Sbjct: 22 MRPRTLEEFVGQEHIIAPGRMLYRAIKA--DRLSSVIFYGPPGTGKTTLARVIANTTKSH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAME 130 F S V A D+ L+ + R +LFIDEIHR + ++ L P +E Sbjct: 80 FEQLSA-VTAGVADVRRLIDEAKQRLGMYGQRTILFIDEIHRFNKAQQDALLPHVE 134 >gi|15611466|ref|NP_223117.1| recombination factor protein RarA [Helicobacter pylori J99] gi|4154931|gb|AAD05978.1| putative [Helicobacter pylori J99] Length = 391 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/116 (38%), Positives = 64/116 (55%), Gaps = 12/116 (10%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79 LL P++LEEF GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 6 LLNPKSLEEFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLKR 63 Query: 80 --VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 ++F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 64 PILSFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|308184225|ref|YP_003928358.1| recombination factor protein RarA [Helicobacter pylori SJM180] gi|308060145|gb|ADO02041.1| recombination factor protein RarA [Helicobacter pylori SJM180] Length = 391 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 ++F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILSFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|329667375|gb|AEB93323.1| recombination factor protein [Lactobacillus johnsonii DPC 6026] Length = 420 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 114/276 (41%), Gaps = 46/276 (16%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ L +F GQ + S K + K +L GPPG GKT+LAQ++ARE Sbjct: 10 LIRPKNLSQFVGQTKLISEGKPLYQIIKNHVPI--SLLLWGPPGTGKTSLAQIIAREYDY 67 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG- 139 + + V KA + + T VL IDEIHR++ +++ L P +E+ Q+ L++G Sbjct: 68 PLATFNASVDNKAKLMQIINTYPYQSFVLLIDEIHRMTTTLQDYLLPYLENGQI-LLIGA 126 Query: 140 --EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 E P V SR + PL D+ D+ ++ R K Sbjct: 127 TTENPIMSIVPAVRSRCQIFE--------FEPLDDK-------------DISEVLVRALK 165 Query: 198 ----LTGLAVTDEAACEIAMRSRGTPRIAGRLL-------------RRVRDFAEVAHAKT 240 L + EA IA + G R+A LL + V++F + H Sbjct: 166 EVFHLDEKQIDKEAINIIARSADGDLRVALNLLETIHAVNGEEISVKNVKEFVKGQHFAY 225 Query: 241 ITREIADAALLRLAIDKMGFDQLD--LRYLTMIARN 274 + L D M D L YLT++ +N Sbjct: 226 DRKATKHYDYLAAYSDSMAGSDTDAALYYLTVLLKN 261 >gi|197304052|ref|ZP_03169081.1| hypothetical protein RUMLAC_02786 [Ruminococcus lactaris ATCC 29176] gi|197296877|gb|EDY31448.1| hypothetical protein RUMLAC_02786 [Ruminococcus lactaris ATCC 29176] Length = 443 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 10/125 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP TLEE GQ K+ A KA + L ++F GPPG GKTTLA+V+A Sbjct: 25 SRMRPTTLEEVVGQQHIIGKGKLLYRAIKA--DKLSSLIFYGPPGTGKTTLAKVIANTTS 82 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F+ + V K D+ ++ +D + +LFIDEIHR + ++ L P +ED Sbjct: 83 AEFKQINATVAGKK-DMEEVVKAAKDLQGMYGKKTILFIDEIHRFNKGQQDYLLPFVEDG 141 Query: 133 QLDLM 137 L L+ Sbjct: 142 TLILI 146 >gi|315638054|ref|ZP_07893239.1| ATPase [Campylobacter upsaliensis JV21] gi|315481902|gb|EFU72521.1| ATPase [Campylobacter upsaliensis JV21] Length = 391 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 9/119 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP L+E GQ E K FI K L H LF G G GKT+ A+ VA+E G++ Sbjct: 7 FRPNNLDEILGQYELVEVFKKFIAMQK-----LPHSLFFGVAGSGKTSFARAVAKEFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F G K +L +L N ++ + ++FIDEIHRLS +E+L ME+++L L+ Sbjct: 62 FYEFDGGNF-KLEELRKILENYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119 >gi|222824546|ref|YP_002576120.1| ATPase, AAA family protein [Campylobacter lari RM2100] gi|222539767|gb|ACM64868.1| ATPase, AAA family protein [Campylobacter lari RM2100] Length = 396 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 10/121 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP+TL+E GQ K FI+A+K L H +F GP G GKT+ A+ +A E ++ Sbjct: 8 FRPKTLDEVLGQENLVEIFKKFIQASK-----LPHSIFFGPAGCGKTSFARAIAYEYKLD 62 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 F G K +L +L+N E+ + ++FIDE+HRLS +E+L +E+ Q L + Sbjct: 63 FYEFDGGNF-KLEELRKILSNYENSLYKPLIFIDEVHRLSKTQQEMLLIPLEN-QKCLFI 120 Query: 139 G 139 G Sbjct: 121 G 121 >gi|77918707|ref|YP_356522.1| recombination factor protein RarA/unknown domain fusion protein [Pelobacter carbinolicus DSM 2380] gi|77544790|gb|ABA88352.1| Recombination protein MgsA [Pelobacter carbinolicus DSM 2380] Length = 726 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 17/168 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RPRTLEE+ GQ ++ A RA+ L ++F GPPG GKTTLAQV+A Sbjct: 17 SRMRPRTLEEYVGQDHILGEGRLLRRAI--RADQLSSLIFYGPPGTGKTTLAQVIANSTA 74 Query: 80 VNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S + V++ DL + + + R +LF+DE+HR + ++ L P +E Sbjct: 75 SRFVSMNA-VLSGVKDLREAIEDARQSQEYYDKRTILFVDEVHRWNKSQQDALLPWVEKG 133 Query: 133 QLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQDR 173 + L+ E P K +SR F L+ T ++T LQD+ Sbjct: 134 TIILIGATTENPYFEVNKALVSRSRVFQLLGLTEENLRQIVTQTLQDK 181 >gi|304316707|ref|YP_003851852.1| ATPase AAA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778209|gb|ADL68768.1| AAA ATPase central domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 444 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 43/239 (17%) Query: 2 MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD N +A ++ +RP TL+EF GQ + K+ A KA + + ++F Sbjct: 1 MDMFQFAHNNFKHSNAPLADRMRPTTLDEFVGQKHILGHDKLLYRAIKA--DRVRSLIFY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113 GPPG GKTTLA ++A +F + V + D+ ++ +D R +LFIDE Sbjct: 59 GPPGTGKTTLANIIANTTKSSFEKLNA-VTSGVTDIKKIVNESKDRLSMYGKRTILFIDE 117 Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPL 170 IHR + ++ L P +ED + +++G E P ++ +SR + PL Sbjct: 118 IHRFNKSQQDALLPYVEDGTI-ILIGATTENPYFEVIRPLVSRSMIFELY--------PL 168 Query: 171 QDRFGIPIRLNFYEIEDLKTIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 + ED+K IV +RG + +TD+A I S G R A Sbjct: 169 SN-------------EDIKEIVLRALNDEKRGLGNEKIKITDDALNHIITYSDGDARAA 214 >gi|291516212|emb|CBK69828.1| Recombination protein MgsA [Bifidobacterium longum subsp. longum F8] Length = 444 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPRTL+E GQ + ++ A+K A V+ GPPG+GKTTLA +VA + Sbjct: 9 MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 68 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +LT +R VLFIDE+HR S ++ L PA+E Sbjct: 69 SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 127 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157 + + + E PS +K LSR ++ Sbjct: 128 NRDVTFIGATTENPSFSIIKPLLSRSVVV 156 >gi|227546758|ref|ZP_03976807.1| recombination ATPase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212720|gb|EEI80601.1| recombination ATPase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 459 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPRTL+E GQ + ++ A+K A V+ GPPG+GKTTLA +VA + Sbjct: 24 MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +LT +R VLFIDE+HR S ++ L PA+E Sbjct: 84 SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGRETVLFIDEVHRFSKSQQDALLPAVE 142 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157 + + + E PS +K LSR ++ Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171 >gi|317481683|ref|ZP_07940716.1| ATPase [Bifidobacterium sp. 12_1_47BFAA] gi|316916862|gb|EFV38251.1| ATPase [Bifidobacterium sp. 12_1_47BFAA] Length = 459 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPRTL+E GQ + ++ A+K A V+ GPPG+GKTTLA +VA + Sbjct: 24 MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +LT +R VLFIDE+HR S ++ L PA+E Sbjct: 84 SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 142 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157 + + + E PS +K LSR ++ Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171 >gi|224437384|ref|ZP_03658355.1| recombination factor protein RarA [Helicobacter cinaedi CCUG 18818] Length = 415 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 6/116 (5%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +LLRP +L++F Q + + K A L H F GPPG GKTTLA ++A+EL Sbjct: 6 ALLRPESLQDFIAQEHIIAPDTPLFKMLKHNA--LSHCFFYGPPGSGKTTLAALIAKELN 63 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S + K +L + + E+ + ++FIDE+HRL+ +E+L P ME + Sbjct: 64 KPFMSYNATSF-KIEELRQFVKSYENTLFQPIIFIDEVHRLTRTQQEVLLPIMESY 118 >gi|213691612|ref|YP_002322198.1| AAA ATPase, central domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523073|gb|ACJ51820.1| AAA ATPase, central domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457699|dbj|BAJ68320.1| recombination factor protein RarA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 465 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPRTL+E GQ + ++ A+K A V+ GPPG+GKTTLA +VA + Sbjct: 24 MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +LT +R VLFIDE+HR S ++ L PA+E Sbjct: 84 SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 142 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157 + + + E PS +K LSR ++ Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171 >gi|239620734|ref|ZP_04663765.1| recombination factor protein RarA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132345|ref|YP_003999684.1| atpase for holliday junction resolvase [Bifidobacterium longum subsp. longum BBMN68] gi|322689648|ref|YP_004209382.1| recombination factor protein RarA [Bifidobacterium longum subsp. infantis 157F] gi|322691609|ref|YP_004221179.1| recombination factor protein RarA [Bifidobacterium longum subsp. longum JCM 1217] gi|239516310|gb|EEQ56177.1| recombination factor protein RarA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311773948|gb|ADQ03436.1| ATPase for Holliday junction resolvase [Bifidobacterium longum subsp. longum BBMN68] gi|320456465|dbj|BAJ67087.1| recombination factor protein RarA [Bifidobacterium longum subsp. longum JCM 1217] gi|320460984|dbj|BAJ71604.1| recombination factor protein RarA [Bifidobacterium longum subsp. infantis 157F] Length = 459 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPRTL+E GQ + ++ A+K A V+ GPPG+GKTTLA +VA + Sbjct: 24 MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +LT +R VLFIDE+HR S ++ L PA+E Sbjct: 84 SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 142 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157 + + + E PS +K LSR ++ Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171 >gi|189438904|ref|YP_001953985.1| recombination factor protein RarA [Bifidobacterium longum DJO10A] gi|32700050|gb|AAP86675.1| putative GTP-binding protein [Bifidobacterium longum subsp. infantis] gi|189427339|gb|ACD97487.1| ATPase for Holliday junction resolvase [Bifidobacterium longum DJO10A] Length = 459 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPRTL+E GQ + ++ A+K A V+ GPPG+GKTTLA +VA + Sbjct: 24 MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +LT +R VLFIDE+HR S ++ L PA+E Sbjct: 84 SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 142 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157 + + + E PS +K LSR ++ Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171 >gi|296133419|ref|YP_003640666.1| AAA ATPase central domain protein [Thermincola sp. JR] gi|296031997|gb|ADG82765.1| AAA ATPase central domain protein [Thermincola potens JR] Length = 445 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 11/138 (7%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD L +N +++A +++ +RPRTL+EF GQ + K+ A +A + L V+F Sbjct: 1 MDLFELNRQNQLKKEAPLAVRMRPRTLDEFVGQEQIVGPGKLLRRAIEA--DQLSSVIFY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113 GPPG GKTTLA+V+A F + V + +L ++ N ++ R +LFIDE Sbjct: 59 GPPGTGKTTLAKVIANTTKAFFVQVNA-VTSGVAELREVIQNAKERLGMYGQRTILFIDE 117 Query: 114 IHRLSIIVEEILYPAMED 131 IHR + ++ L P +ED Sbjct: 118 IHRFNKSQQDALLPYVED 135 >gi|225027995|ref|ZP_03717187.1| hypothetical protein EUBHAL_02264 [Eubacterium hallii DSM 3353] gi|224954709|gb|EEG35918.1| hypothetical protein EUBHAL_02264 [Eubacterium hallii DSM 3353] Length = 445 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 35/235 (14%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD +S +E++ +++ +RP+ L+E GQ K+ A KA + + ++F Sbjct: 5 MDLFEYMSMQRKKEESPLAVRMRPKNLDEVAGQQHIIGKDKLLYRAIKA--DKISSLIFY 62 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113 GPPG GKTTLA+V+A NF + K D+ ++ +D R +LFIDE Sbjct: 63 GPPGTGKTTLAKVIANTTSANFVQMNATTSGKK-DMEQAVSQAKDAFGMYGKRTILFIDE 121 Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPL 170 IHR + ++ L P +ED + +++G ++N LSR + PL Sbjct: 122 IHRFNKAQQDYLLPFVEDGTV-ILIGATTENPYFEVNSALLSRSQI--------FHLEPL 172 Query: 171 QDRFGIPIRLNFYEIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 + + Y + +KT V +RG G +T+EAA IA + G R A Sbjct: 173 AES-------DIYRL--VKTAVEDNERGMGAYGAVITEEAARFIAEMAGGDARRA 218 >gi|210134616|ref|YP_002301055.1| recombination factor protein RarA [Helicobacter pylori P12] gi|210132584|gb|ACJ07575.1| recombination factor protein [Helicobacter pylori P12] Length = 391 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 ++F +T K DL L N ++ + ++FIDE HRL+ +E L P ME Sbjct: 63 RPILSFNATD----FKLEDLRLKLKNYQNTLLKPIVFIDETHRLNKTQQEFLLPIME 115 >gi|23464657|ref|NP_695260.1| recombination factor protein RarA [Bifidobacterium longum NCC2705] gi|23325217|gb|AAN23896.1| widely conserved hypothetical protein with possible helicase and ATP binding domains [Bifidobacterium longum NCC2705] Length = 459 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPRTL+E GQ + ++ A+K A V+ GPPG+GKTTLA +VA + Sbjct: 24 MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +LT +R VLFIDE+HR S ++ L PA+E Sbjct: 84 SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGRETVLFIDEVHRFSKSQQDALLPAVE 142 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157 + + + E PS +K LSR ++ Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171 >gi|296454576|ref|YP_003661719.1| AAA ATPase [Bifidobacterium longum subsp. longum JDM301] gi|296184007|gb|ADH00889.1| AAA ATPase, central domain protein [Bifidobacterium longum subsp. longum JDM301] Length = 459 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPRTL+E GQ + ++ A+K A V+ GPPG+GKTTLA +VA + Sbjct: 24 MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +LT +R VLFIDE+HR S ++ L PA+E Sbjct: 84 SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 142 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157 + + + E PS +K LSR ++ Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171 >gi|46190307|ref|ZP_00206422.1| COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [Bifidobacterium longum DJO10A] Length = 436 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPRTL+E GQ + ++ A+K A V+ GPPG+GKTTLA +VA + Sbjct: 1 MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 60 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +LT +R VLFIDE+HR S ++ L PA+E Sbjct: 61 SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 119 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157 + + + E PS +K LSR ++ Sbjct: 120 NRDVTFIGATTENPSFSIIKPLLSRSVVV 148 >gi|291550085|emb|CBL26347.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Ruminococcus torques L2-14] Length = 438 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 10/134 (7%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N +E S +RP TL+E GQ K+ A KA + L ++F GPPG GKTTL Sbjct: 11 NKEKESPLASRMRPVTLDEVVGQKHIIGKDKLLYRAIKA--DKLSSLIFYGPPGTGKTTL 68 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123 A+V+A F+ + V K D+ ++ +D + +LFIDEIHR + ++ Sbjct: 69 AKVIAHTTSAEFKQINATVAGKK-DMEEVVKEAKDLQGMYGKKTILFIDEIHRFNKGQQD 127 Query: 124 ILYPAMEDFQLDLM 137 L P +ED L L+ Sbjct: 128 YLLPFVEDGTLILI 141 >gi|57505824|ref|ZP_00371749.1| ATPase, AAA family [Campylobacter upsaliensis RM3195] gi|57015854|gb|EAL52643.1| ATPase, AAA family [Campylobacter upsaliensis RM3195] Length = 391 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 9/119 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP L+E GQ E K FI K L H LF G G GKT+ A+ VA+E G++ Sbjct: 7 FRPNNLDEILGQYELVEVFKKFIAMQK-----LPHSLFFGVAGSGKTSFARSVAKEFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F G K +L +L N ++ + ++FIDEIHRLS +E+L ME+++L L+ Sbjct: 62 FYEFDGGNF-KLEELRKILENYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119 >gi|226323883|ref|ZP_03799401.1| hypothetical protein COPCOM_01658 [Coprococcus comes ATCC 27758] gi|225207432|gb|EEG89786.1| hypothetical protein COPCOM_01658 [Coprococcus comes ATCC 27758] Length = 450 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 62/121 (51%), Gaps = 14/121 (11%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP TL+E GQ K+ A KA + L V+F GPPG GKTTLA+V+A Sbjct: 31 SRLRPTTLDEVVGQQHIIGKDKLLYRAIKA--DKLSSVIFYGPPGTGKTTLAKVIANTTS 88 Query: 80 VNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + V+ KA +L + + R +LFIDEIHR + ++ L P +E Sbjct: 89 AEFTQINATVAGKKDMEEVVNKAKELKGM---YQKRTILFIDEIHRFNKGQQDYLLPFVE 145 Query: 131 D 131 D Sbjct: 146 D 146 >gi|323704141|ref|ZP_08115720.1| AAA ATPase central domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536207|gb|EGB25979.1| AAA ATPase central domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 442 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 42/218 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+EF GQ + K+ A KA + + ++F GPPG GKTTLA ++A + Sbjct: 22 MRPTTLDEFVGQKHILGHDKLLYRAIKA--DKVRSLIFYGPPGTGKTTLANIIANTTKSS 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + V + D+ ++ +D R +LF+DEIHR + ++ L P +ED + Sbjct: 80 FEKLNA-VTSGVTDIKKIVNESKDRLSMYGKRTILFVDEIHRFNKSQQDALLPYVEDGTI 138 Query: 135 DLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 +++G E P ++ +SR + PL D +D++ I Sbjct: 139 -ILIGATTENPYFEVIRPLVSRSMIFELY--------PLSD-------------DDIREI 176 Query: 192 V-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 V +RG + VTD+A I S G R A Sbjct: 177 VLRALNDEKRGLGNEKIKVTDDALNHIIAYSDGDARTA 214 >gi|219849982|ref|YP_002464415.1| recombination factor protein RarA [Chloroflexus aggregans DSM 9485] gi|219544241|gb|ACL25979.1| AAA ATPase central domain protein [Chloroflexus aggregans DSM 9485] Length = 485 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 19/167 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ K+ A + L ++ GPPG GKTTLAQ++A + Sbjct: 29 MRPRTLDEFVGQTHIIGEGKLLRRAIAN--DQLFSLILWGPPGSGKTTLAQIIANSTNAH 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V A DL ++ +D R V+FIDEIHR + ++ + P +ED + Sbjct: 87 FEPLSA-VSAGVNDLRRVVQEAKDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGTI 145 Query: 135 DLMVGEGPSARSVKIN---LSR---FTLIAAT-TRVGLLTN-PLQDR 173 +++G S ++N LSR FTL A T +G+L + L DR Sbjct: 146 -ILIGATTENPSFEVNAALLSRARVFTLEALTDEEIGILIDRALSDR 191 >gi|32267139|ref|NP_861171.1| recombination factor protein RarA [Helicobacter hepaticus ATCC 51449] gi|32263192|gb|AAP78237.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 411 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 12/117 (10%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79 LLRP +L++F GQ + + + A H F GPPG GKTTLA+++A+EL Sbjct: 7 LLRPTSLQDFIGQEHIIAPHTPLFKMLQHHTIA--HCFFYGPPGSGKTTLAKLIAKELNK 64 Query: 80 --VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMED 131 NF +T+ K +L + N E + ++FIDE+HRL+ + +E+L P ME Sbjct: 65 PFANFNATT----FKIEELRKFIKNYEGGLYQPLIFIDEVHRLNTLQQEVLLPIMES 117 >gi|227495470|ref|ZP_03925786.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces coleocanis DSM 15436] gi|226831017|gb|EEH63400.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces coleocanis DSM 15436] Length = 444 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 25/183 (13%) Query: 5 EGLLSRNVSQEDADISL---LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVL 58 E ++ V++ +A L +RP T+EE GQ + S L+ +E A A+A+ V+ Sbjct: 5 ESSVTPAVAESNAHAPLAARMRPTTVEELVGQQHLLTPGSPLRRLLEPADP-AKAVSSVI 63 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFI 111 GPPG+GKTTLA +VAR G +F S V + ++ +++ + +LFI Sbjct: 64 LWGPPGVGKTTLAYLVARSSGRHFAEVSA-VSSGVKEVRDVISEAKRHLATDGKETILFI 122 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNP 169 DE+HR S ++ L PA+E+ + L+ E PS + LSR L L NP Sbjct: 123 DEVHRFSKSQQDSLLPAVENRWVTLIAATTENPSFSVISPLLSRSIL--------LTLNP 174 Query: 170 LQD 172 L+D Sbjct: 175 LED 177 >gi|167768575|ref|ZP_02440628.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1] gi|317497939|ref|ZP_07956247.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710099|gb|EDS20678.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1] gi|291560535|emb|CBL39335.1| ATPase related to the helicase subunit of the Holliday junction resolvase [butyrate-producing bacterium SSC/2] gi|316894772|gb|EFV16946.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA] Length = 438 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 97/220 (44%), Gaps = 46/220 (20%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+E GQ K+ A KA + + ++F GPPG GKTTLA+V+A N Sbjct: 22 MRPATLDEVVGQEHIIGKDKLLYRAIKA--DKISSIIFYGPPGTGKTTLAKVIANTTKAN 79 Query: 82 F----RSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F +TSG + D L + + +LFIDEIHR + ++ L P +ED Sbjct: 80 FVQMNATTSGKKDMQEAVADAKESLGMYQKKTILFIDEIHRFNKAQQDYLLPFVED---- 135 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEI-----EDLK 189 LI ATT NP + + R N +E+ ED+K Sbjct: 136 ----------------GTIILIGATTE-----NPYFEVNQALISRSNVFELHSLDKEDIK 174 Query: 190 TIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 ++ ++G + G +TD+A ++ + G R A Sbjct: 175 KLIVRAITDDEKGMGIYGATITDDALDFLSDMAEGDARSA 214 >gi|10198155|gb|AAG15220.1|AF288461_6 unknown [Chloroflexus aurantiacus] Length = 377 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 26/237 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEEF GQ K+ A + L ++ GPPG GKTTLAQ++A + Sbjct: 29 MRPRTLEEFVGQHHLVGEGKLLRRAIAN--DQLFSLILWGPPGSGKTTLAQIIAHSTKAH 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V A DL ++ +D R V+FIDEIHR + ++ + P +ED + Sbjct: 87 FEPISA-VSAGVNDLRRVVQEAQDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGTI 145 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE----DLKT 190 +++G S ++N + + + RV L + G+ I + E DLK Sbjct: 146 -ILIGATTENPSFEVN----SALLSRARVFKLEALTDEEIGVLIDRALTDRERGLGDLKI 200 Query: 191 IVQRGAK------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 ++ R A+ G A T A E A RS+ P I L V D + ++ + Sbjct: 201 MLARDARDYLVNMANGDARTALNALEAAARSK-PPAIGETRLITVDDIRDALQSRAV 256 >gi|302384865|ref|YP_003820687.1| ATPase AAA [Clostridium saccharolyticum WM1] gi|302195493|gb|ADL03064.1| AAA ATPase central domain protein [Clostridium saccharolyticum WM1] Length = 439 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 10/125 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP +L+E GQ K+ A KA + L V+F GPPG GKTTLA+V+A Sbjct: 20 SRLRPASLDEVVGQQHIIGRDKLLYRAIKA--DKLGSVIFYGPPGTGKTTLARVIANTTS 77 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 +F+ + V K D+ ++ +D + +LF+DEIHR + ++ L P +ED Sbjct: 78 ADFKQINATVAGKK-DMEEIVKEAKDSLGMYGKKTILFVDEIHRFNKGQQDYLLPFVEDG 136 Query: 133 QLDLM 137 L L+ Sbjct: 137 TLILI 141 >gi|118580657|ref|YP_901907.1| recombination factor protein RarA [Pelobacter propionicus DSM 2379] gi|118503367|gb|ABK99849.1| Recombination protein MgsA [Pelobacter propionicus DSM 2379] Length = 448 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 119/263 (45%), Gaps = 48/263 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL EFTGQ L+ IE + L ++F GPPG GKTTLA V+ARE Sbjct: 31 MRPRTLTEFTGQEHLVGEDRILRRMIET-----DTLSSLIFWGPPGCGKTTLAHVIARET 85 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 +F S +++ ++ + E R +LF+DEIHR + ++ P +E Sbjct: 86 RAHFIFFSA-ILSGIKEIREIFREAEGVASRGRRTILFVDEIHRFNKSQQDAFLPYVEK- 143 Query: 133 QLDLMVG---EGPSARSVKINLSRFTLIA-----ATTRVGLLTNPLQDRFGIPIRLNFYE 184 + M+G E PS + LSR ++ +T GL+ L DR Sbjct: 144 GVVTMIGATTENPSFEVIAPLLSRCRVLTLKQLEPSTIAGLIGQALADR----------- 192 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +RG GL +++E ++ ++ G R+A L + A +A + I+ E Sbjct: 193 --------ERGLGELGLDISEEGLDFLSRQAGGDARVA---LNTLEVAAGLARERLISLE 241 Query: 245 IADAALLRLAI--DKMGFDQLDL 265 AL + A+ DK G + ++ Sbjct: 242 TVQEALQKKALLYDKRGEEHYNV 264 >gi|158337198|ref|YP_001518373.1| recombination factor protein RarA/unknown domain fusion protein [Acaryochloris marina MBIC11017] gi|158307439|gb|ABW29056.1| ATPase, AAA family protein [Acaryochloris marina MBIC11017] Length = 742 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL+EF GQ E ++ A +A + L ++F GPPG GKTTLAQ++A + Sbjct: 22 LRPRTLDEFVGQDEIVGPGRLLRRAIQA--DQLSSLIFYGPPGTGKTTLAQIIANTTQAH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + + V+A D+ + + +D R +LF+DE+HR + ++ L P +E+ Sbjct: 80 FLALNA-VLAGIKDIRSSVDEAQDRRGQYGQRTILFVDEVHRFNKAQQDALLPWVEN 135 >gi|325263700|ref|ZP_08130433.1| ATPase, AAA family [Clostridium sp. D5] gi|324030738|gb|EGB92020.1| ATPase, AAA family [Clostridium sp. D5] Length = 438 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 85/187 (45%), Gaps = 39/187 (20%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP +LEE GQ K+ A KA + L ++F GPPG GKTTLA+V+A Sbjct: 20 SRMRPSSLEEVVGQQHIIGRDKLLYRAIKA--DKLGSLIFYGPPGTGKTTLAKVIANTTS 77 Query: 80 VNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F+ + + K LL + + +LFIDEIHR + ++ L P +ED Sbjct: 78 AEFKQINATIAGKKDMEEVVKGAKELLGMYQKKTILFIDEIHRFNKGQQDYLLPYVED-- 135 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI-RLNFYEI-----ED 187 TLI ATT NP + G + R + +E+ ED Sbjct: 136 ------------------GTITLIGATTE-----NPYFEVNGALLSRSSVFELKSLSRED 172 Query: 188 LKTIVQR 194 +KT+++R Sbjct: 173 VKTLLKR 179 >gi|163846016|ref|YP_001634060.1| recombination factor protein RarA [Chloroflexus aurantiacus J-10-fl] gi|222523744|ref|YP_002568214.1| recombination factor protein RarA [Chloroflexus sp. Y-400-fl] gi|163667305|gb|ABY33671.1| AAA ATPase central domain protein [Chloroflexus aurantiacus J-10-fl] gi|222447623|gb|ACM51889.1| AAA ATPase central domain protein [Chloroflexus sp. Y-400-fl] Length = 497 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 99/212 (46%), Gaps = 25/212 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEEF GQ K+ A + L ++ GPPG GKTTLAQ++A + Sbjct: 29 MRPRTLEEFVGQHHLVGEGKLLRRAIAN--DQLFSLILWGPPGSGKTTLAQIIAHSTKAH 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V A DL ++ +D R V+FIDEIHR + ++ + P +ED + Sbjct: 87 FEPISA-VSAGVNDLRRVVQEAQDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGTI 145 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE----DLKT 190 +++G S ++N + + + RV L + G+ I + E DLK Sbjct: 146 -ILIGATTENPSFEVN----SALLSRARVFKLEALTDEEIGVLIDRALTDRERGLGDLKI 200 Query: 191 IVQRGAK------LTGLAVTDEAACEIAMRSR 216 ++ R A+ G A T A E A RS+ Sbjct: 201 MLARDARDYLVNMANGDARTALNALEAAARSK 232 >gi|319955815|ref|YP_004167078.1| recombination protein mgsa [Nitratifractor salsuginis DSM 16511] gi|319418219|gb|ADV45329.1| Recombination protein MgsA [Nitratifractor salsuginis DSM 16511] Length = 396 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 7/120 (5%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+TL+E GQ + F + + +AL H LF GPPG GKTTL +++A++L F Sbjct: 9 RPQTLDEMVGQEHLLAPEAPFRKLVEK--DALPHSLFFGPPGCGKTTLTRILAKKLDRPF 66 Query: 83 RSTSGPVIAKAGDLAALL---TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + + K +L L N + ++FIDE+HRLS +E+L P ME+ Q L+VG Sbjct: 67 HEFNATTL-KIDELRQLFKKYANALQKPLVFIDEVHRLSKTQQEVLLPYMEE-QRALIVG 124 >gi|225352769|ref|ZP_03743792.1| hypothetical protein BIFPSEUDO_04399 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156376|gb|EEG69945.1| hypothetical protein BIFPSEUDO_04399 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 458 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 40/217 (18%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP +++E GQ ++ A+K A ++ GPPG+GKTTLA +VA++ Sbjct: 23 MRPSSVDEVVGQSRVLGQGSPLRRLANPASKGSLTAPSSIILFGPPGVGKTTLAYIVAKQ 82 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +L DR VLFIDE+HR S ++ L P++E Sbjct: 83 SGRVFEELSA-VTSGVKDVRDVLRRAHDRLVAEGKETVLFIDEVHRFSKSQQDALLPSVE 141 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDL 188 + + T IAATT + PL R + ++L E +DL Sbjct: 142 NRDV--------------------TFIAATTENPSFSIIKPLLSR-SVVVKLESLEPDDL 180 Query: 189 KTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPR 220 KT+++R + + + DEA EI + G R Sbjct: 181 KTLIKRAIESERGLKNEVKINDEAVDEIVRMAGGDAR 217 >gi|237751577|ref|ZP_04582057.1| recombination factor protein RarA [Helicobacter bilis ATCC 43879] gi|229372943|gb|EEO23334.1| recombination factor protein RarA [Helicobacter bilis ATCC 43879] Length = 402 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 7/119 (5%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 RP TLE F GQ + L++ IE + L ++LF GPPG GKT+LA ++A Sbjct: 8 FRPTTLENFIGQKHLLAQDAPLRIIIEKNIQDSNMLPNLLFFGPPGSGKTSLAHIIATLS 67 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 ++ ++F +T+ + + +L +L + ++ +LFIDE+HRL+I +E L P +E Q+ Sbjct: 68 KKTFLSFNATNFKLDSLKKEL-SLYEHTMNKPLLFIDEVHRLNIAQQEFLLPILEKGQV 125 >gi|298529786|ref|ZP_07017189.1| AAA ATPase central domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511222|gb|EFI35125.1| AAA ATPase central domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 400 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 32/213 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+++E+F GQ + L+ A +++ L LF GPPG GK+TLA ++A G + Sbjct: 9 IRPQSIEDFVGQSHLRTRLR-----AMGQSQRLQSTLFFGPPGCGKSTLALIIAGNQGKS 63 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 S P I LA L LE ++L +DE+HR S ++ P +E ++ L+ Sbjct: 64 HLRLSAPEIG----LAELRKKLEGLEILILDELHRFSKAQQDFFLPLLETGEIILLATTT 119 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 E PS + LSR + +RL + +L+ I +R K Sbjct: 120 ENPSFSVTRQLLSRMNV---------------------LRLRSLSMPELRQIGERAVKEL 158 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 +++ +++ +A S G R L+ VR+ Sbjct: 159 DVSIPEKSLDLLASLSGGDARTFLNLMEYVREL 191 >gi|167957055|ref|ZP_02544129.1| recombination factor protein RarA [candidate division TM7 single-cell isolate TM7c] Length = 400 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 32/211 (15%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ +++ GQ S K+ + K + E + +L+ GPPG GKTTLA+++A+E Sbjct: 9 LMRPQKIKDIIGQRHLLSEGKILYKIIKQK-EPVSLILW-GPPGSGKTTLARIIAKETEA 66 Query: 81 NFRSTSGPVIAKAG-----DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 NF S K ++A NL+ R VLF+DEIHR S + ++ P +E + Sbjct: 67 NFMELSAVTSGKKEINNIIEIARQNWNLQLRTVLFVDEIHRFSKVQQDAFLPHIESGLIT 126 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L+ E PS + LSR ++ PL+D+ D++ I+ Sbjct: 127 LIGATTENPSFEIITPLLSRVKVMT--------LKPLEDK-------------DIQQILT 165 Query: 194 RGAKLTGLA--VTDEAACEIAMRSRGTPRIA 222 + + + VT+E+ +A S G R+A Sbjct: 166 KAIEKLAKSKLVTNESIEYLAHISSGDARVA 196 >gi|326201922|ref|ZP_08191792.1| AAA ATPase central domain protein [Clostridium papyrosolvens DSM 2782] gi|325987717|gb|EGD48543.1| AAA ATPase central domain protein [Clostridium papyrosolvens DSM 2782] Length = 427 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 92/214 (42%), Gaps = 34/214 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 + PRT++EF GQ K+ KA + + ++ GPPG GKT+LA+++A + Sbjct: 12 MSPRTIDEFAGQKHIIGKDKMLYRMIKA--DRITSIILYGPPGTGKTSLARIIANTTQSS 69 Query: 82 FRS----TSGPVIAK--AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F TSG K A D L N R VLF+DEIHR + ++ L P +ED + Sbjct: 70 FEKLNAVTSGVADIKRIAADTQNTLLNPNGRTVLFVDEIHRFNKAQQDALLPFVEDGSIV 129 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVG-----LLTNPLQDRFGIPIRLNFYEIEDL 188 L+ E P K +SR T+ G LL N L+D+ Sbjct: 130 LIGATTENPFFEVNKALISRSTVFMLKPLEGEDIKELLKNALEDK--------------- 174 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 RG + +TDEA + S G R A Sbjct: 175 ----DRGLGNYEINITDEAMDYLCEVSSGDARTA 204 >gi|189425566|ref|YP_001952743.1| recombination factor protein RarA [Geobacter lovleyi SZ] gi|189421825|gb|ACD96223.1| AAA ATPase central domain protein [Geobacter lovleyi SZ] Length = 435 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 124/264 (46%), Gaps = 50/264 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L EF GQ + L+ IEA + L ++F GPPG GKTTLA ++A E Sbjct: 20 MRPRSLGEFCGQEHLLGPGKALRKMIEA-----DQLPSMIFWGPPGCGKTTLAHIIAHET 74 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S ++A ++ + + E R +LF+DEIHR + ++ PA+E Sbjct: 75 SSRFVFFSA-IMAGVKEIREIFKDAEAYAAGGTRTILFVDEIHRFNKAQQDAFLPAVEKG 133 Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + ++ E PS F +IA PL R + +RL E ++L T Sbjct: 134 LVTIIGATTENPS----------FEVIA----------PLLSRCRV-LRLKQLEADELAT 172 Query: 191 IVQRGAKLT-------GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ++Q+ + T LA+ DEA ++ ++G R A L + A +A I+ Sbjct: 173 LLQKTLQDTEKGLGGLQLAIEDEALTFLSEAAQGDGRKA---LNTLEVAAGLAQDGLISL 229 Query: 244 EIADAALLRLAI--DKMGFDQLDL 265 EIA A+ + A+ DK G + ++ Sbjct: 230 EIAQEAMQQKALLYDKGGEEHYNV 253 >gi|303246593|ref|ZP_07332871.1| AAA ATPase central domain protein [Desulfovibrio fructosovorans JJ] gi|302491933|gb|EFL51811.1| AAA ATPase central domain protein [Desulfovibrio fructosovorans JJ] Length = 408 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 32/201 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+ F GQ S L + A + L +LF GPPG GK+TLA ++AR Sbjct: 15 VRPGALDGFVGQTHVISRLTTMLAAPR-----LPSLLFFGPPGCGKSTLALILARAKERP 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 + S P +AG LAAL ++ +++L +DE+HR S ++ P +E ++ L+ Sbjct: 70 YVRVSAP---EAG-LAALRELIKGKEILILDELHRFSKAQQDFFLPLLETGEIVLLATTT 125 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 E PS + LSR + RL +L + +RGAK Sbjct: 126 ENPSFSVTRQLLSRLHV---------------------FRLRPLSQAELLVLAERGAKEA 164 Query: 200 GLAVTDEAACEIAMRSRGTPR 220 G+ + E+ +AM S G R Sbjct: 165 GMELAPESLEAVAMLSSGDGR 185 >gi|163815250|ref|ZP_02206627.1| hypothetical protein COPEUT_01410 [Coprococcus eutactus ATCC 27759] gi|158449445|gb|EDP26440.1| hypothetical protein COPEUT_01410 [Coprococcus eutactus ATCC 27759] Length = 443 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 15/140 (10%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + N S++D+ ++ +RP +L++ GQ K+ A KA + + ++F Sbjct: 1 MDLFEYMRENASEDDSPLAKRMRPVSLDDVVGQEHIIGKDKLLYRAIKA--DKISSLIFY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFR----STSGP-----VIAKAGDLAALLTNLEDRDVLFI 111 GPPG GKTTLA V+A FR +T+G V+ +A D+ A+ R +LFI Sbjct: 59 GPPGTGKTTLAMVIANTTKAEFRQLNATTAGKKDMEQVVNEARDIKAMYGK---RTILFI 115 Query: 112 DEIHRLSIIVEEILYPAMED 131 DEIHR + ++ L P +ED Sbjct: 116 DEIHRFNKSQQDYLLPFVED 135 >gi|183601785|ref|ZP_02963155.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis HN019] gi|219683685|ref|YP_002470068.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis AD011] gi|241190717|ref|YP_002968111.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196123|ref|YP_002969678.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219391|gb|EDT90032.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis HN019] gi|219621335|gb|ACL29492.1| AAA ATPase, central domain protein [Bifidobacterium animalis subsp. lactis AD011] gi|240249109|gb|ACS46049.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250677|gb|ACS47616.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793706|gb|ADG33241.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis V9] Length = 504 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 35/186 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARA-EALDHVLFVGPPGLGKTTLAQVVARE 77 +RP TL+E GQ + S L+ ++A + A V+ GPPG+GKTTLA +VA++ Sbjct: 23 MRPTTLDEVVGQRHVLAPGSPLRRLADSASTGSLTAPSSVILFGPPGVGKTTLAHIVAKQ 82 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G + S V + DL +L +R VLFIDE+HR S ++ L P++E Sbjct: 83 SGRQYEELSA-VTSGVKDLREVLRRAHERLVSQGKETVLFIDEVHRFSKSQQDALLPSVE 141 Query: 131 DFQLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + + + E PS +K LSR + ++L E E+L Sbjct: 142 NRDVTFIAATTENPSFSVIKPLLSRSVV---------------------VKLESLEPEEL 180 Query: 189 KTIVQR 194 +T+++R Sbjct: 181 RTVIER 186 >gi|303241541|ref|ZP_07328042.1| AAA ATPase central domain protein [Acetivibrio cellulolyticus CD2] gi|302590959|gb|EFL60706.1| AAA ATPase central domain protein [Acetivibrio cellulolyticus CD2] Length = 430 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 19/167 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TLEEF GQ + + K+ KA + + V+ GPPG GKT+LA+++A N Sbjct: 12 MRPKTLEEFFGQEDIVGSGKLLYRMIKA--DRITSVILYGPPGTGKTSLARIIANTTKAN 69 Query: 82 FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + V A D+ ++ N + VLF+DEIHR + ++ L P +ED + Sbjct: 70 FEKLNA-VTAGVSDIKRIVADTRNQILNPSQKTVLFVDEIHRFNKAQQDALLPYVEDGTI 128 Query: 135 DLMVG---EGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDR 173 ++VG E P K +SR ++ + + ++ N L D+ Sbjct: 129 -ILVGATTENPYFEVNKALISRSSVFMLKPLGMGAIISIVKNALHDK 174 >gi|212716947|ref|ZP_03325075.1| hypothetical protein BIFCAT_01891 [Bifidobacterium catenulatum DSM 16992] gi|212660232|gb|EEB20807.1| hypothetical protein BIFCAT_01891 [Bifidobacterium catenulatum DSM 16992] Length = 464 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 76/273 (27%), Positives = 116/273 (42%), Gaps = 53/273 (19%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP +++E GQ ++ A+K A ++ GPPG+GKTTLA +VA++ Sbjct: 23 MRPSSVDEVVGQSRVLGQGSPLRRLANPASKGSLTAPSSIILFGPPGVGKTTLAYIVAKQ 82 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +L DR VLFIDE+HR S ++ L P++E Sbjct: 83 SGRVFEELSA-VTSGVKDVRDVLRRAHDRLVAEGKETVLFIDEVHRFSKSQQDALLPSVE 141 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDL 188 + + T IAATT + PL R + ++L E +DL Sbjct: 142 NRDV--------------------TFIAATTENPSFSVIKPLLSR-SVVVKLESLEPDDL 180 Query: 189 KTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR-----DFAEVAHA 238 KT++ R + + + DEA EI + G R +L D A A Sbjct: 181 KTLINRAIESEYGLKNEVKINDEAVDEIVRMAGGDARKTLTILEAAAGALTGDKARKKGA 240 Query: 239 K------TITREIADAALLRLAIDKMGFDQLDL 265 K + ++ D A +R DK G D D+ Sbjct: 241 KRPIITPDVVSQVMDVATVRY--DKDGDDHYDV 271 >gi|291519780|emb|CBK75001.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Butyrivibrio fibrisolvens 16/4] Length = 439 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 60/117 (51%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP TL+E GQ K+ A KA + L ++F GPPG GKTTLAQV+A Sbjct: 22 LRPTTLDEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTTLAQVIAHTTAAE 79 Query: 82 FRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + K D+ A+ L + +LFIDEIHR + ++ L P +ED Sbjct: 80 FTSINATTSGKK-DMEAVVEAAKQTLGAYGKKTILFIDEIHRFNKGQQDYLLPFVED 135 >gi|119025603|ref|YP_909448.1| recombination factor protein RarA [Bifidobacterium adolescentis ATCC 15703] gi|154487065|ref|ZP_02028472.1| hypothetical protein BIFADO_00903 [Bifidobacterium adolescentis L2-32] gi|118765187|dbj|BAF39366.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] gi|154084928|gb|EDN83973.1| hypothetical protein BIFADO_00903 [Bifidobacterium adolescentis L2-32] Length = 466 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 40/217 (18%) Query: 22 LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP ++++ GQ E ++ A+K A ++ GPPG+GKTTLA +VA++ Sbjct: 23 MRPASIDDVVGQSRVLGEGSPLRRLANPASKGSLTAPSSIILFGPPGVGKTTLAYIVAKQ 82 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +L +R VLFIDE+HR S ++ L P++E Sbjct: 83 SGRVFEELSA-VTSGVKDVRDVLKRAHERLVSEGKETVLFIDEVHRFSKSQQDALLPSVE 141 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDL 188 + + T IAATT + PL R + ++L E +DL Sbjct: 142 NRDV--------------------TFIAATTENPSFSVIKPLLSR-SVVVKLESLEPDDL 180 Query: 189 KTIVQRG-AKLTGLA----VTDEAACEIAMRSRGTPR 220 KT++ R A GL +TDEA EI + G R Sbjct: 181 KTLINRAIASEHGLDNEIRITDEAVDEIIRMAGGDAR 217 >gi|218961662|ref|YP_001741437.1| ATPase, AAA family [Candidatus Cloacamonas acidaminovorans] gi|167730319|emb|CAO81231.1| ATPase, AAA family [Candidatus Cloacamonas acidaminovorans] Length = 437 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 22/169 (13%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHV 57 + DRE L ++ V + LRP+TLEE GQ + S L+ IE+ + + Sbjct: 9 LFDREELSTKTVPLAEK----LRPQTLEELLGQTKLIAENSPLRQMIESGEYHS-----F 59 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLF 110 + GPPG GKTT+A+++ + G NF S V+A D+ A++ + R +LF Sbjct: 60 ILWGPPGSGKTTIARIIEKNSGYNFIRFSA-VLASISDVKAVMKEADYLHRTQNKRSILF 118 Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 IDEIHR + ++ P +E + L+ E PS + LSR T+ Sbjct: 119 IDEIHRFNKSQQDAFLPYVESGAIILIGATTENPSFEVIPALLSRCTVF 167 >gi|94986459|ref|YP_594392.1| recombination factor protein RarA [Lawsonia intracellularis PHE/MN1-00] gi|94730708|emb|CAJ54070.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Lawsonia intracellularis PHE/MN1-00] Length = 410 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 92/215 (42%), Gaps = 32/215 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+ F GQ L+ I A + L +LF GPPG GK+TLA ++A + N Sbjct: 10 LRPNNLDTFIGQNHLLERLQYIISAPR-----LPSLLFFGPPGCGKSTLALLLAYKKSTN 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 S P + L L D D+L +DEIHR S ++ P +E +L ++ Sbjct: 65 ILRISAPETG----IQQLRQKLTDIDILILDEIHRFSKAQQDFFLPLLESGKLTMLATTT 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 E PS K LSR N LQ R +L + E LK +V++G Sbjct: 121 ENPSFSVTKQLLSRL-------------NVLQLR-----QLGYNE---LKELVKKGTLFL 159 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 + + D+ +A + G R L+ + E Sbjct: 160 NILLPDDVINFLATTAHGDARTLFNLIEYISILPE 194 >gi|42519086|ref|NP_965016.1| recombination factor protein RarA [Lactobacillus johnsonii NCC 533] gi|41583373|gb|AAS08982.1| hypothetical protein LJ_1160 [Lactobacillus johnsonii NCC 533] Length = 420 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ L +F GQ + S K + K +L GPPG GKT+LAQ++ARE Sbjct: 10 LIRPKNLSQFVGQTKLISEGKPLYQIIKNHVPI--SLLLWGPPGTGKTSLAQIIAREYDY 67 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + + V KA + + T VL IDEIHR++ +++ L P +E+ Q+ L++G Sbjct: 68 PLATFNASVDNKAKLMQIINTYPYQSFVLLIDEIHRMTTTLQDYLLPYLENGQI-LLIG 125 >gi|160893315|ref|ZP_02074102.1| hypothetical protein CLOL250_00864 [Clostridium sp. L2-50] gi|156865007|gb|EDO58438.1| hypothetical protein CLOL250_00864 [Clostridium sp. L2-50] Length = 438 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 104/234 (44%), Gaps = 54/234 (23%) Query: 13 SQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 +Q+D D L +RP L+E GQ K+ A KA + L ++F GPPG GKTT Sbjct: 10 NQKDDDSPLAKRMRPENLDEVIGQEHIIGKNKLLYRAIKA--DKLGSLIFYGPPGTGKTT 67 Query: 70 LAQVVARELGVNFR----STSGP-----VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 LA V+A +F+ +TSG +I +A + A+ R +LFIDEIHR + Sbjct: 68 LAMVIAHTTKADFKQINATTSGKKDMEQIIEEAKNTKAMYGR---RTILFIDEIHRFNKS 124 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI-R 179 ++ L P +ED LI ATT NP + G I R Sbjct: 125 QQDYLLPFVED--------------------GTIILIGATTE-----NPYFEVNGALISR 159 Query: 180 LNFYEI-----EDLKTIV------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 N +E+ E++K I+ Q+G + + D+A ++ S G R A Sbjct: 160 SNIFELKPLSKENIKDIILKAVYDQKGMGAFNVCIDDDAVEFLSDMSEGDARSA 213 >gi|208434367|ref|YP_002266033.1| conserved hypothetical helicase-like protein [Helicobacter pylori G27] gi|208432296|gb|ACI27167.1| conserved hypothetical helicase-like protein [Helicobacter pylori G27] Length = 391 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|289178455|gb|ADC85701.1| ATPase, AAA family [Bifidobacterium animalis subsp. lactis BB-12] Length = 520 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 35/187 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARA-EALDHVLFVGPPGLGKTTLAQVVARE 77 +RP TL+E GQ + S L+ ++A + A V+ GPPG+GKTTLA +VA++ Sbjct: 39 MRPTTLDEVVGQRHVLAPGSPLRRLADSASTGSLTAPSSVILFGPPGVGKTTLAHIVAKQ 98 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G + S V + DL +L +R VLFIDE+HR S ++ L P++E Sbjct: 99 SGRQYEELSA-VTSGVKDLREVLRRAHERLVSQGKETVLFIDEVHRFSKSQQDALLPSVE 157 Query: 131 DFQLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + + + E PS +K LSR + ++L E E+L Sbjct: 158 NRDVTFIAATTENPSFSVIKPLLSRSVV---------------------VKLESLEPEEL 196 Query: 189 KTIVQRG 195 +T+++R Sbjct: 197 RTVIERA 203 >gi|217031651|ref|ZP_03437156.1| hypothetical protein HPB128_21g209 [Helicobacter pylori B128] gi|298736639|ref|YP_003729165.1| recombination factor protein RarA [Helicobacter pylori B8] gi|216946851|gb|EEC25447.1| hypothetical protein HPB128_21g209 [Helicobacter pylori B128] gi|298355829|emb|CBI66701.1| recombination factor protein RarA [Helicobacter pylori B8] Length = 391 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|258405684|ref|YP_003198426.1| recombination factor protein RarA [Desulfohalobium retbaense DSM 5692] gi|257797911|gb|ACV68848.1| AAA ATPase central domain protein [Desulfohalobium retbaense DSM 5692] Length = 404 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 32/215 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L++F GQ L+ A++ L +LF GPPG GK+TLA + A+ G Sbjct: 12 IRPHSLDDFIGQTHLRQRLQALQNASR-----LSSLLFFGPPGCGKSTLALMFAKAHGGA 66 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQLDLMVG 139 + S P + LA L +++ D+L +DE+HR S ++ P +E D L Sbjct: 67 YLRVSAPEVG----LANLRKQIQNTDILILDELHRFSKAQQDFFLPLLETGDIILLATTT 122 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 E PS + LSR + +RL ++L + QRG + Sbjct: 123 ENPSFSITRQLLSRLHV---------------------LRLRPLGPQELLDLAQRGQQEL 161 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 GL + D++ + + G R LL + +E Sbjct: 162 GLHLPDKSLELLCTYAGGDGRTLLNLLEYAEELSE 196 >gi|50547977|ref|XP_501458.1| YALI0C05038p [Yarrowia lipolytica] gi|49647325|emb|CAG81759.1| YALI0C05038p [Yarrowia lipolytica] Length = 626 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 46/215 (21%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L RP+TL++ +GQ E + L+ F+ + + ++F GPPG+GKTTLA+++A+ G Sbjct: 128 LCRPQTLDDISGQKELMAVLRRFVAYGR-----IPSIIFWGPPGVGKTTLARILAKTSGN 182 Query: 81 NFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S VI +A + LL +LFIDE+HR S +++L PA+E Sbjct: 183 RFVELSATQNNVADVKKVIDQANNEWKLLKR---GTILFIDELHRFSKAQQDVLLPAVEK 239 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAA-TTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + L+ E PS F L+ A T+R +LT L ++D+ Sbjct: 240 GDITLIGATTENPS----------FRLVGALTSRCRVLT------------LKKLSMKDI 277 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223 K +V+R + D A E+ + + IAG Sbjct: 278 KEVVERSL----VKYNDTAEHEVILPTEVIDYIAG 308 >gi|52425453|ref|YP_088590.1| recombination factor protein RarA [Mannheimia succiniciproducens MBEL55E] gi|52307505|gb|AAU38005.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 449 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 10/155 (6%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M + L S+N +Q S LRP +L+EF GQ KV + + L ++F G Sbjct: 10 MKQTSLFSQNNTQNQPLASRLRPTSLDEFVGQKHLLEPGKVLQQMI--VQDELSSMIFWG 67 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115 P G+GKTTLAQ++A + F + S V++ D+ ++ E ++ ++FIDEIH Sbjct: 68 PSGVGKTTLAQIIAHQTNAKFITFSA-VVSGIKDIKKIMEEAETDREMGEKTIVFIDEIH 126 Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 R + ++ P +E + +++G S +IN Sbjct: 127 RFNKAQQDAFLPYVEKGSI-ILIGATTENPSFEIN 160 >gi|218133225|ref|ZP_03462029.1| hypothetical protein BACPEC_01089 [Bacteroides pectinophilus ATCC 43243] gi|217992098|gb|EEC58102.1| hypothetical protein BACPEC_01089 [Bacteroides pectinophilus ATCC 43243] Length = 447 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 11/139 (7%) Query: 1 MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 +MD + N ++++ + S +RP TLEE GQ ++ A KA + + ++F Sbjct: 4 LMDLFQYMRENTMEKESPLASRMRPETLEEVVGQQHIIGKDRLLYRAIKA--DKISSIIF 61 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112 GPPG GKTTLA+V+A +F + V K D+ ++ +D + +LF+D Sbjct: 62 YGPPGTGKTTLAKVIANTTSADFCQINATVAGKK-DMEDVVAKAKDNIGMYGRKTILFVD 120 Query: 113 EIHRLSIIVEEILYPAMED 131 EIHR + ++ L P +ED Sbjct: 121 EIHRFNKGQQDYLLPFVED 139 >gi|317009066|gb|ADU79646.1| recombination factor protein RarA [Helicobacter pylori India7] Length = 391 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 6/114 (5%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 F + K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPFLLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|289643078|ref|ZP_06475209.1| AAA ATPase central domain protein [Frankia symbiont of Datisca glomerata] gi|289507122|gb|EFD28090.1| AAA ATPase central domain protein [Frankia symbiont of Datisca glomerata] Length = 526 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 16/120 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E GQ + A S L+ +E + VL GPPG GKTTLA +++ Sbjct: 22 LRPRTLDELVGQRHLLGAGSPLRRLVEGGGTTS-----VLLWGPPGSGKTTLAHIISGSG 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 G FR S V A D+ A++ D R VLFIDE+HR + ++ L PA+E+ Sbjct: 77 GRRFRELSA-VTAGVKDVRAVIDQARDTLAVSGVRTVLFIDEVHRFTRTQQDALLPAVEN 135 >gi|225174582|ref|ZP_03728580.1| AAA ATPase central domain protein [Dethiobacter alkaliphilus AHT 1] gi|225169709|gb|EEG78505.1| AAA ATPase central domain protein [Dethiobacter alkaliphilus AHT 1] Length = 445 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 93/217 (42%), Gaps = 42/217 (19%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TLE F GQ L+ IE+ + L +LF GPPG GKTTLA+++A + Sbjct: 22 LRPKTLEGFAGQTHLVGEGKPLRRLIES-----DVLSSLLFYGPPGTGKTTLAEIIAEKT 76 Query: 79 GVNF---RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S V ++ A L R VLF+DEIHR + ++ L PA+E Sbjct: 77 NAAFVRVNAVSSSVSELRKEMEAARNRLAQEGKRTVLFVDEIHRFNKAQQDALLPAVEK- 135 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLKT 190 LI ATT T PL R I ED++ Sbjct: 136 -------------------GIVVLIGATTENPYFTVNAPLLSRMRI-FPFEPLSAEDVRA 175 Query: 191 IVQRG-----AKLTGLAVTDEAACEIAMRSRGTPRIA 222 ++ R A+L + TDEA +AM + G R A Sbjct: 176 LLVRAQSEPEARLETVEFTDEALDHLAMMANGDARTA 212 >gi|229827568|ref|ZP_04453637.1| hypothetical protein GCWU000182_02957 [Abiotrophia defectiva ATCC 49176] gi|229788206|gb|EEP24320.1| hypothetical protein GCWU000182_02957 [Abiotrophia defectiva ATCC 49176] Length = 437 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 118/267 (44%), Gaps = 53/267 (19%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP F GQ L+ IE + + ++F GPPG+GKTTLA ++A + Sbjct: 20 LRPEEFSAFAGQEHLIGEGKLLRRLIEN-----DNITSMIFWGPPGVGKTTLAGIIAAKT 74 Query: 79 G---VNFRS-TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 +NF + TSG V+AKAG+ L R VLF+DEIHR + ++ P + Sbjct: 75 HSEFINFSAVTSGIKEIKEVMAKAGETRKLGM----RTVLFVDEIHRFNKAQQDAFLPFV 130 Query: 130 EDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLN 181 E + +++G S +IN LSR F L TT LLT L+D+ Sbjct: 131 ERGSI-ILIGATTENPSFEINAALLSRCKVFVLKQLTTEDIAKLLTRALKDK-------- 181 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 +G + + + DE IA+ S G R A L + E KTI Sbjct: 182 ------------KGFGMLNVEIADELVHAIALFSNGDARTALNTLEMAINNGEFTKEKTI 229 Query: 242 -TREIADAALLRLAI--DKMGFDQLDL 265 T+EI + + A+ DK G + +L Sbjct: 230 VTKEIVEQCTGKKALLYDKNGEEHYNL 256 >gi|297243480|ref|ZP_06927412.1| helicase subunit of the Holliday junction resolvase-like ATPase [Gardnerella vaginalis AMD] gi|296888525|gb|EFH27265.1| helicase subunit of the Holliday junction resolvase-like ATPase [Gardnerella vaginalis AMD] Length = 455 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 37/192 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAE----ALDHVLFVGPPGLGKTTLAQVVARE 77 +RP ++E+ GQ+ A A ++ A V+ GPPG+GKTTLA +VAR+ Sbjct: 23 MRPSSIEDVLGQLHALKEGSPLRRLANPQSRGSLTAPSSVVLFGPPGVGKTTLAYIVARQ 82 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ A+L +R VLFIDE+HR S ++ L P++E Sbjct: 83 SGRVFEELSA-VTSGVKDVRAVLDRAHERLVSNGQETVLFIDEVHRFSKSQQDALLPSVE 141 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + + + E PS +K LSR + ++L +EDL Sbjct: 142 NRDVTFIGATTENPSFSIIKPLLSR---------------------SVVVKLESLSVEDL 180 Query: 189 KTIVQRGAKLTG 200 T+++R LTG Sbjct: 181 HTLIERA--LTG 190 >gi|196228384|ref|ZP_03127251.1| AAA ATPase central domain protein [Chthoniobacter flavus Ellin428] gi|196227787|gb|EDY22290.1| AAA ATPase central domain protein [Chthoniobacter flavus Ellin428] Length = 426 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+LEE+ GQ + K+ A +A + + ++ GPPG GKTTLA+++A Sbjct: 1 MRPRSLEEYAGQEHILAPGKLLRRAIEA--DRISSIILFGPPGTGKTTLAEIIASATQSR 58 Query: 82 FRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F SG V + DL A LTN ++ +LFIDEIHR + +++L P +E Sbjct: 59 FERLSG-VESNVADLRRVIATAANRLTNKGEKTILFIDEIHRWNKAQQDVLLPDVE 113 >gi|148657906|ref|YP_001278111.1| recombination factor protein RarA [Roseiflexus sp. RS-1] gi|148570016|gb|ABQ92161.1| AAA ATPase, central domain protein [Roseiflexus sp. RS-1] Length = 505 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 15/162 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ KV A +AL ++ GPPG GKTTLA+++A + Sbjct: 27 MRPRTLDEFVGQDHIIGEGKVLRRAISN--DALFSIILWGPPGSGKTTLARIIADTTNAH 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V A DL ++ +D R ++FIDEIHR + ++ + P +ED + Sbjct: 85 FEQLSA-VSAGVADLRRVVKEAQDRLGMFQQRTIVFIDEIHRFNKAQQDAILPYVEDGTI 143 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176 +++G S ++N + + + RV +L D+ G+ Sbjct: 144 -ILIGATTENPSFEVNPA----LRSRARVFVLEALTDDQIGV 180 >gi|311064077|ref|YP_003970802.1| AAA family ATPase [Bifidobacterium bifidum PRL2010] gi|310866396|gb|ADP35765.1| AAA family ATPase [Bifidobacterium bifidum PRL2010] Length = 468 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 81/273 (29%), Positives = 118/273 (43%), Gaps = 53/273 (19%) Query: 22 LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPRT++E GQ E ++ ++K A ++ GPPG+GKTTLA +VAR+ Sbjct: 24 MRPRTVDEVLGQSHVLGEGSPLRRLANPSSKGSLTAPSSIIMFGPPGVGKTTLATIVARQ 83 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +L R VLFIDE+HR S ++ L PA+E Sbjct: 84 SGRAFEELSA-VTSGVKDVRDVLARARRRLVGDGTETVLFIDEVHRFSKSQQDALLPAVE 142 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + + + E PS +K LSR + ++L E DL Sbjct: 143 NRDVTFIGATTENPSFSVIKPLLSRSVV---------------------VKLESLEPSDL 181 Query: 189 KTIVQRGAK----LTGLAVTDEAAC-EIAMRSRGTPRIAGRLLRRVR-----DFAEVAHA 238 T++ R + L G D+AA EI + G R +L D A A Sbjct: 182 ATLIARAVEDKRGLNGEVKIDDAAVNEIVRMAGGDARKTLTILEAAAGAVTGDKARKKGA 241 Query: 239 K--TIT----REIADAALLRLAIDKMGFDQLDL 265 + TIT ++ DAA +R DK G D D+ Sbjct: 242 RRPTITPDVVSQVMDAATVRY--DKDGDDHYDV 272 >gi|261337911|ref|ZP_05965795.1| ATPase, AAA family [Bifidobacterium gallicum DSM 20093] gi|270277391|gb|EFA23245.1| ATPase, AAA family [Bifidobacterium gallicum DSM 20093] Length = 460 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 14/149 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAK-ARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP TL+E GQ +++ S L+ + A A ++ GPPG+GKTTLA +VA++ Sbjct: 23 MRPHTLDEVIGQQRVLQSGSPLRRLADPASLGSLTAPSSIILFGPPGVGKTTLATIVAQQ 82 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ A+L +R VLFIDE+HR S ++ L P++E Sbjct: 83 SGRAFEELSA-VTSGVKDVRAVLARAHERLVSSGQETVLFIDEVHRFSKSQQDALLPSVE 141 Query: 131 DFQLDLMVG--EGPSARSVKINLSRFTLI 157 + + + E PS +K LSR ++ Sbjct: 142 NRDITFIAATTENPSFSVIKPLLSRSVVV 170 >gi|260589707|ref|ZP_05855620.1| replication-associated recombination protein A [Blautia hansenii DSM 20583] gi|331083138|ref|ZP_08332255.1| hypothetical protein HMPREF0992_01179 [Lachnospiraceae bacterium 6_1_63FAA] gi|260539947|gb|EEX20516.1| replication-associated recombination protein A [Blautia hansenii DSM 20583] gi|330405140|gb|EGG84677.1| hypothetical protein HMPREF0992_01179 [Lachnospiraceae bacterium 6_1_63FAA] Length = 439 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 10/125 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP TLEE GQ K+ A KA + L V+F GPPG GKTTLA+V+A Sbjct: 20 SRMRPVTLEEVAGQEHIIGKDKLLYRAIKA--DKLGSVIFYGPPGTGKTTLAKVIANTTS 77 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F+ + V K D+ ++ + + +LF+DEIHR + ++ L P +ED Sbjct: 78 ARFKQINATVAGKK-DMEEVVKEAQQHLGMYGKKTILFVDEIHRFNKGQQDYLLPFVEDG 136 Query: 133 QLDLM 137 L L+ Sbjct: 137 TLILI 141 >gi|315586413|gb|ADU40794.1| crossover junction endodeoxyribonuclease ATPase [Helicobacter pylori 35A] Length = 391 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|261837854|gb|ACX97620.1| hypothetical protein KHP_0409 [Helicobacter pylori 51] Length = 391 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|167745397|ref|ZP_02417524.1| hypothetical protein ANACAC_00088 [Anaerostipes caccae DSM 14662] gi|167655118|gb|EDR99247.1| hypothetical protein ANACAC_00088 [Anaerostipes caccae DSM 14662] Length = 439 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 8/116 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL+E GQ K+ A +A + L ++F GPPG GKTTLA+V+A+ N Sbjct: 22 MRPKTLDEVVGQEHIIGKDKLLYRAIQA--DKLSSIIFYGPPGTGKTTLARVIAQTTQAN 79 Query: 82 FRSTSGPVIAKAGDLAAL------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + K A+ L + + +LFIDEIHR + ++ L P +ED Sbjct: 80 FVQMNATTSGKKEMQEAVKEAKEALGMFQKKTILFIDEIHRFNKAQQDFLLPFVED 135 >gi|310287217|ref|YP_003938475.1| AAA family ATPase [Bifidobacterium bifidum S17] gi|309251153|gb|ADO52901.1| AAA family ATPase [Bifidobacterium bifidum S17] Length = 468 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 81/273 (29%), Positives = 118/273 (43%), Gaps = 53/273 (19%) Query: 22 LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPRT++E GQ E ++ ++K A ++ GPPG+GKTTLA +VAR+ Sbjct: 24 MRPRTVDEVLGQSHVLGEGSPLRRLANPSSKGSLTAPSSIIMFGPPGVGKTTLATIVARQ 83 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +L R VLFIDE+HR S ++ L PA+E Sbjct: 84 SGRAFEELSA-VTSGVKDVRDVLARARRRLVGDGTETVLFIDEVHRFSKSQQDALLPAVE 142 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + + + E PS +K LSR + ++L E DL Sbjct: 143 NRDVTFIGATTENPSFSVIKPLLSRSVV---------------------VKLESLEPSDL 181 Query: 189 KTIVQRGAK----LTGLAVTDEAAC-EIAMRSRGTPRIAGRLLRRVR-----DFAEVAHA 238 T++ R + L G D+AA EI + G R +L D A A Sbjct: 182 ATLIARAVEDKRGLNGEVKIDDAAVNEIVRMAGGDARKTLTILEAAAGAVTGDKARKKGA 241 Query: 239 K--TIT----REIADAALLRLAIDKMGFDQLDL 265 + TIT ++ DAA +R DK G D D+ Sbjct: 242 RRPTITPDVVSQVMDAATVRY--DKDGDDHYDV 272 >gi|188527230|ref|YP_001909917.1| recombination factor protein RarA [Helicobacter pylori Shi470] gi|188143470|gb|ACD47887.1| recombination factor protein RarA [Helicobacter pylori Shi470] Length = 391 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVIFIDETHRLNKTQQEFLLPIME 115 >gi|313898685|ref|ZP_07832220.1| replication-associated recombination protein A [Clostridium sp. HGF2] gi|312956569|gb|EFR38202.1| replication-associated recombination protein A [Clostridium sp. HGF2] Length = 441 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 73/281 (25%), Positives = 131/281 (46%), Gaps = 42/281 (14%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M++ L +V Q+D + LRP +L+++ GQ K+ + + + ++F G Sbjct: 1 MEQNSLFQNDV-QKDPLAARLRPASLQDYVGQKHLLGKGKILYNLIEK--DMVSSMIFWG 57 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115 PPG+GKTTLA+++AR+ +F + S V + ++ A++ ED + ++F+DEIH Sbjct: 58 PPGVGKTTLARIIARQTQAHFINFSA-VTSGIREIKAVMKEAEDARLYGRKTIVFVDEIH 116 Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIA--ATTRVGLLT 167 R + ++ P +E + +++G S ++N LSR F L A + V LL Sbjct: 117 RFNKAQQDAFLPYVEKGSI-ILIGATTENPSFEVNAALLSRCKVFVLKALEVSDLVELLK 175 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 + LQD +RG + +T+E +A+ + G R A L Sbjct: 176 HALQD--------------------ERGFGSQHVLITEEQLHMLAVFANGDARTALNTLE 215 Query: 228 RVRDFAEVAHAK-TITREIADAALLR--LAIDKMGFDQLDL 265 V E + A IT+E+ + + L D+ G + +L Sbjct: 216 MVVLNGESSEAGIVITKEVLEQCTSQKSLLYDRQGEEHYNL 256 >gi|317473057|ref|ZP_07932357.1| ATPase [Anaerostipes sp. 3_2_56FAA] gi|316899486|gb|EFV21500.1| ATPase [Anaerostipes sp. 3_2_56FAA] Length = 439 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 8/116 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL+E GQ K+ A +A + L ++F GPPG GKTTLA+V+A+ N Sbjct: 22 MRPKTLDEVVGQEHIIGKDKLLYRAIQA--DKLSSIIFYGPPGTGKTTLARVIAQTTQAN 79 Query: 82 FRSTSGPVIAKAGDLAAL------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + K A+ L + + +LFIDEIHR + ++ L P +ED Sbjct: 80 FVQMNATTSGKKEMQEAVKEAKEALGMFQKKTILFIDEIHRFNKAQQDFLLPFVED 135 >gi|309388968|gb|ADO76848.1| Recombination protein MgsA [Halanaerobium praevalens DSM 2228] Length = 447 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 15/127 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L EF GQ E K+ A KA + L ++F GPPG GKT+LAQV+A + + Sbjct: 21 MRPQSLAEFYGQAEIVGENKLLSRAIKA--DRLQSLIFYGPPGTGKTSLAQVIANQTEAD 78 Query: 82 FRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F T+G VI KA L + + +LFIDEIHR + ++ L P++E Sbjct: 79 FVKLNAVTAGVKDIREVIKKAKSNRNLYNS---KTILFIDEIHRFNKSQQDALLPSVEKG 135 Query: 133 QLDLMVG 139 + +M+G Sbjct: 136 TI-IMIG 141 >gi|220929355|ref|YP_002506264.1| recombination factor protein RarA [Clostridium cellulolyticum H10] gi|219999683|gb|ACL76284.1| AAA ATPase central domain protein [Clostridium cellulolyticum H10] Length = 432 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 91/207 (43%), Gaps = 37/207 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 + PRT++EF GQ K+ KA + + ++ GPPG GKT+LA+++A Sbjct: 12 MSPRTIDEFVGQKHIIEKDKMLYRMIKA--DRITSIILYGPPGTGKTSLARIIANTTQST 69 Query: 82 FRS----TSGPVIAK--AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F TSG K A D L N R VLFIDEIHR + ++ L P +ED + Sbjct: 70 FEKLNAVTSGVADIKRIAADTQNTLLNPNGRTVLFIDEIHRFNKSQQDALLPFVEDGSIV 129 Query: 136 LM--VGEGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 L+ E P K +SR T+ + +T LL N L D+ Sbjct: 130 LIGATTENPFFEVNKALISRSTVFMLKPLESTDIRELLENALVDK--------------- 174 Query: 189 KTIVQRGAKLTGLAVTDEA---ACEIA 212 +RG + +TDEA CEI Sbjct: 175 ----ERGLGNYKINITDEALGYLCEIC 197 >gi|317179185|dbj|BAJ56973.1| recombination factor protein RarA [Helicobacter pylori F30] Length = 391 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|317177233|dbj|BAJ55022.1| recombination factor protein RarA [Helicobacter pylori F16] Length = 391 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|284047303|ref|YP_003397643.1| ATPase AAA [Conexibacter woesei DSM 14684] gi|283951524|gb|ADB54268.1| AAA ATPase central domain protein [Conexibacter woesei DSM 14684] Length = 427 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 115/263 (43%), Gaps = 54/263 (20%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTLEE+ GQ + S L+ IE + + ++ GPPG GKTTLA++VA Sbjct: 25 MRPRTLEEYVGQEHLLHDGSALRTAIEQGRPHS-----MILYGPPGAGKTTLARIVASSA 79 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 F S + + ++ A++ E R + F+DEIHR + ++ L PA+ED Sbjct: 80 DAVFEELSAVQVGRP-EVRAVIERAEQRRRMGRQTIFFLDEIHRFNKAQQDALLPAVED- 137 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI-RLNFYEIEDLK-- 189 R TLI ATT NP + G + R Y + +L Sbjct: 138 -------------------GRLTLIGATT-----ENPSYEVNGALLSRARLYALRELTED 173 Query: 190 ---TIVQRGA--KLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 T+++R + GL D+ A E +A RS G R A L + + A +T Sbjct: 174 HVLTLLRRAVERRECGLVSVDDDALELLAARSGGDARTA---LAALELACDTAPESKVTL 230 Query: 244 EIADAALLR--LAIDKMGFDQLD 264 E A+ AL R L D+ D Sbjct: 231 EHAEDALQRRILHYDRASDHHYD 253 >gi|307637117|gb|ADN79567.1| ATPase [Helicobacter pylori 908] gi|325995708|gb|ADZ51113.1| ATPase [Helicobacter pylori 2018] gi|325997304|gb|ADZ49512.1| putative recombination factor protein [Helicobacter pylori 2017] Length = 391 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +LL P +LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 ALLNPTSLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 ++F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILSFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|229817989|ref|ZP_04448271.1| hypothetical protein BIFANG_03276 [Bifidobacterium angulatum DSM 20098] gi|229784593|gb|EEP20707.1| hypothetical protein BIFANG_03276 [Bifidobacterium angulatum DSM 20098] Length = 458 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 14/149 (9%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP TL+E GQ ++ A+K A ++ GPPG+GKTTLA +VA++ Sbjct: 24 MRPHTLDEVVGQSHVLGQGSPLRRLANPASKGSLTAPSSIILFGPPGVGKTTLATIVAKQ 83 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +L +R VLFIDE+HR S ++ L PA+E Sbjct: 84 SGREFEELSA-VTSGVKDVRDVLDRAHERLVSQGKETVLFIDEVHRFSKSQQDALLPAVE 142 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157 + + + E PS +K LSR ++ Sbjct: 143 NRDVTFIGATTENPSFSVIKPLLSRSVVV 171 >gi|308061773|gb|ADO03661.1| recombination factor protein RarA [Helicobacter pylori Cuz20] Length = 391 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|20808203|ref|NP_623374.1| recombination factor protein RarA [Thermoanaerobacter tengcongensis MB4] gi|254479310|ref|ZP_05092650.1| ATPase, AAA family protein [Carboxydibrachium pacificum DSM 12653] gi|20516797|gb|AAM24978.1| uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Thermoanaerobacter tengcongensis MB4] gi|214034758|gb|EEB75492.1| ATPase, AAA family protein [Carboxydibrachium pacificum DSM 12653] Length = 440 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 121/260 (46%), Gaps = 38/260 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ K E + +++ ++ GPPG+GKTTLA ++A Sbjct: 22 MRPRTLDEFVGQEHILGKGKALRELIEK--DSITSMILWGPPGVGKTTLAMIIANMTNSK 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V++ ++ ++ E R V+FIDEIHR + ++ P +E + Sbjct: 80 FVNFSA-VLSGIKEIKEIMAQAERDAMYGQRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 137 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N + + + ++V + PL +++D+ I++R Sbjct: 138 ILIGATTENPSFEVN----SALLSRSKV-FMMKPL-------------DVKDIMIILKRA 179 Query: 196 AK-------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIAD 247 K L + + +E +IA+ S G R+A L A V + K +T EI Sbjct: 180 LKDEERGLGLYNVEIDEEKLEKIALFSNGDARVALNTLEMAVMAANVVNGKRVVTDEILS 239 Query: 248 AALLRLAI--DKMGFDQLDL 265 + + A+ DK G + +L Sbjct: 240 DVMQKKALLYDKAGEEHYNL 259 >gi|308063282|gb|ADO05169.1| recombination factor protein RarA [Helicobacter pylori Sat464] Length = 391 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|317153252|ref|YP_004121300.1| MgsA AAA+ ATPase-like protein [Desulfovibrio aespoeensis Aspo-2] gi|316943503|gb|ADU62554.1| MgsA AAA+ ATPase-like protein [Desulfovibrio aespoeensis Aspo-2] Length = 407 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 11/138 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L+EF GQ + ++ F ++ + L +L GPPG GK+TLA ++AR G Sbjct: 15 IRPKSLDEFVGQGHIRNRIEAFTKSKR-----LPSLLLFGPPGCGKSTLAMLLARLTGKK 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 S P +AG L AL L D+L +DE+HR S ++ P +E ++ L+ Sbjct: 70 SLRLSAP---EAG-LTALRKQLPGHDILILDELHRFSKAQQDFFLPILESGEITLLATTT 125 Query: 140 EGPSARSVKINLSRFTLI 157 E PS + LSR ++ Sbjct: 126 ENPSFSVTRQLLSRLHVL 143 >gi|301112162|ref|XP_002905160.1| ATPase WRNIP1 [Phytophthora infestans T30-4] gi|262095490|gb|EEY53542.1| ATPase WRNIP1 [Phytophthora infestans T30-4] Length = 499 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L + GQ E S L IEA + + +++ GPPG GKTTLA V++++ Sbjct: 90 MRPTDLNDLVGQEELLGPGSLLSTLIEADR-----VPNMILWGPPGCGKTTLAHVISKKT 144 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131 G F S SG +KAGD+ + R ++F+DEIHR + I ++ P +ED Sbjct: 145 GCKFISLSG-ATSKAGDMKDAVDRARGERKMFRRRTIVFVDEIHRFNKIQQDFFLPPVED 203 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS LSR Sbjct: 204 GTITLIGATTENPSFEVNNALLSR 227 >gi|282882872|ref|ZP_06291477.1| replication-associated recombination protein A [Peptoniphilus lacrimalis 315-B] gi|281297283|gb|EFA89774.1| replication-associated recombination protein A [Peptoniphilus lacrimalis 315-B] Length = 429 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 14/176 (7%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 + +N++ + LRP+ LEEF GQ K K+ + ++ +LF GPPG+GK Sbjct: 1 MEKNLNNKSPLADRLRPKNLEEFVGQDHIIGQGKFLSRLIKS--DRVNSLLFYGPPGVGK 58 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSII 120 TTLA+++A NF S V + +L +L +D ++FIDEIHR + Sbjct: 59 TTLAKIIANLTNKNFVELSA-VTSNIKELREVLNKAQDDFKFSNIETIVFIDEIHRFNKT 117 Query: 121 VEEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173 ++ L P +E + +++G E P K LSR ++ T N L DR Sbjct: 118 QQDALLPYVER-GIIILIGATTENPYFEVNKALLSRLQILNLTALENKDMNKLIDR 172 >gi|240143952|ref|ZP_04742553.1| ATPase, AAA family [Roseburia intestinalis L1-82] gi|257203986|gb|EEV02271.1| ATPase, AAA family [Roseburia intestinalis L1-82] gi|291534968|emb|CBL08080.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Roseburia intestinalis M50/1] gi|291539530|emb|CBL12641.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Roseburia intestinalis XB6B4] Length = 443 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 97/225 (43%), Gaps = 52/225 (23%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP TL+E GQ K+ A KA + L ++ GPPG GKTTLA+V+A Sbjct: 20 SRLRPTTLDEMVGQQHIIGKDKLLYRAIKA--DKLSSIILYGPPGTGKTTLAKVIANSTS 77 Query: 80 VNF---RSTSG------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F +TS VIAKA + + + +LFIDEIHR + ++ L P +E Sbjct: 78 AEFLQMNATSAGKKDMEDVIAKAKNNMGMFGK---KTILFIDEIHRFNKGQQDYLLPFVE 134 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG------IPIRLNFYE 184 D LI ATT NP + G I L E Sbjct: 135 D--------------------GTIILIGATTE-----NPYFEVNGALLSRSIIFELKSLE 169 Query: 185 IEDLKTIVQRGAKLT--GL----AVTDEAACE-IAMRSRGTPRIA 222 ED+KT++ R T G+ AV DE A + +A S G R A Sbjct: 170 KEDIKTLILRAVNDTQKGMGAYHAVIDEDALDFLADISNGDARAA 214 >gi|108562846|ref|YP_627162.1| recombination factor protein RarA [Helicobacter pylori HPAG1] gi|107836619|gb|ABF84488.1| conserved hypothetical helicase-like protein [Helicobacter pylori HPAG1] Length = 391 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ + F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPNAFFYGPPGVGKTSLAQIIARSLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 ++F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILSFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|331090669|ref|ZP_08339518.1| hypothetical protein HMPREF9477_00161 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400083|gb|EGG79734.1| hypothetical protein HMPREF9477_00161 [Lachnospiraceae bacterium 2_1_46FAA] Length = 440 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 11/138 (7%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + N ++++ + S LRP LEE GQ K+ A RA+ L ++F Sbjct: 1 MDLFEYMRENTKEKESPLASRLRPTKLEEVVGQQHIIGKDKLLYRAI--RADKLSSIIFY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113 GP G GKTTLA+V+A F + + K D+ A++ ++ R +LFIDE Sbjct: 59 GPSGTGKTTLAKVIANTTSAEFMQMNATIAGKK-DMEAVIEQAKNNLGMYGKRTILFIDE 117 Query: 114 IHRLSIIVEEILYPAMED 131 IHR + ++ L P +ED Sbjct: 118 IHRFNKGQQDYLLPFVED 135 >gi|87301395|ref|ZP_01084236.1| ATPase [Synechococcus sp. WH 5701] gi|87284363|gb|EAQ76316.1| ATPase [Synechococcus sp. WH 5701] Length = 742 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+LEEF GQ E ++ A RA+ + +++ GPPG+GKTTLA+++A + Sbjct: 23 LRPRSLEEFVGQAEILGPGRLLRRAI--RADRVGNLILHGPPGVGKTTLARIIASSTRAH 80 Query: 82 FRSTSGPVIAKAGDL----AALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V+A DL A LE R +LFIDE+HR ++ ++ L P +E+ + Sbjct: 81 FTSLNA-VLAGVKDLRVEVEAARQRLERHGLRTLLFIDEVHRFNVAQQDALLPWVENGTV 139 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E P K +SR L Sbjct: 140 TLIGATTENPYFEVNKALVSRSRLF 164 >gi|224418782|ref|ZP_03656788.1| recombination factor protein RarA [Helicobacter canadensis MIT 98-5491] gi|253826695|ref|ZP_04869580.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142299|ref|ZP_07804492.1| recombination factor protein RarA [Helicobacter canadensis MIT 98-5491] gi|253510101|gb|EES88760.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131330|gb|EFR48947.1| recombination factor protein RarA [Helicobacter canadensis MIT 98-5491] Length = 391 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 6/114 (5%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ ++F GQ F+ K+ + H F GPPG GKTT A+++A EL F Sbjct: 9 RPKNFQQFIGQKHIFGENSPFMRLLKSGE--IPHSFFFGPPGSGKTTAARLIANELDYPF 66 Query: 83 RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 S + K+ DL +L ++ + ++FIDE+HRL+ +E+L P ME+ Q Sbjct: 67 YSLNATSF-KSEDLRNILKQHQNTLQKPLIFIDEVHRLNKAQQELLLPIMENHQ 119 >gi|295092672|emb|CBK78779.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Clostridium cf. saccharolyticum K10] Length = 452 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 10/136 (7%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S + +E S LRP TL+E GQ K+ A KA + L V+F GPPG GKT Sbjct: 9 SSTMEKEAPLASRLRPSTLDEVVGQKHIIGKDKLLYRAIKA--DKLGSVIFYGPPGTGKT 66 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121 TLA+V+A F + K D+ + +D + +LF+DEIHR + Sbjct: 67 TLARVIANTTSARFTQINATTAGKK-DMEEAVKEAKDALGMYGQKTILFVDEIHRFNKSQ 125 Query: 122 EEILYPAMEDFQLDLM 137 ++ L P +ED L L+ Sbjct: 126 QDYLLPFVEDGTLILI 141 >gi|283798842|ref|ZP_06347995.1| ATPase, AAA family [Clostridium sp. M62/1] gi|291073529|gb|EFE10893.1| ATPase, AAA family [Clostridium sp. M62/1] Length = 452 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 10/136 (7%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S + +E S LRP TL+E GQ K+ A KA + L V+F GPPG GKT Sbjct: 9 SSTMEKEAPLASRLRPSTLDEVVGQKHIIGKDKLLYRAIKA--DKLGSVIFYGPPGTGKT 66 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121 TLA+V+A F + K D+ + +D + +LF+DEIHR + Sbjct: 67 TLARVIANTTSARFTQINATTAGKK-DMEEAVKEAKDALGMYGQKTILFVDEIHRFNKSQ 125 Query: 122 EEILYPAMEDFQLDLM 137 ++ L P +ED L L+ Sbjct: 126 QDYLLPFVEDGTLILI 141 >gi|157414507|ref|YP_001481763.1| recombination factor protein RarA [Campylobacter jejuni subsp. jejuni 81116] gi|157385471|gb|ABV51786.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747149|gb|ADN90419.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni M1] gi|315932005|gb|EFV10958.1| ATPase family associated with various cellular activities (AAA) family protein [Campylobacter jejuni subsp. jejuni 327] Length = 393 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP ++ GQ E K F K L H +F G G GKTT A+VVA+E G++ Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F G K +L +L N ++ + ++FIDEIHRLS +E+L ME+++L L+ Sbjct: 62 FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119 >gi|283955639|ref|ZP_06373132.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792864|gb|EFC31640.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 1336] Length = 393 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP ++ GQ E K F K L H +F G G GKTT A+VVA+E G++ Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F G K +L +L N ++ + ++FIDEIHRLS +E+L ME+++L L+ Sbjct: 62 FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119 >gi|205356556|ref|ZP_03223319.1| helicase like protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205345561|gb|EDZ32201.1| helicase like protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 393 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP ++ GQ E K F K L H +F G G GKTT A+VVA+E G++ Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F G K +L +L N ++ + ++FIDEIHRLS +E+L ME+++L L+ Sbjct: 62 FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119 >gi|153951019|ref|YP_001397445.1| recombination factor protein RarA [Campylobacter jejuni subsp. doylei 269.97] gi|152938465|gb|ABS43206.1| ATPase, AAA family protein [Campylobacter jejuni subsp. doylei 269.97] Length = 393 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP ++ GQ E K F K L H +F G G GKTT A+VVA+E G++ Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F G K +L +L N ++ + ++FIDEIHRLS +E+L ME+++L L+ Sbjct: 62 FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119 >gi|121613547|ref|YP_999917.1| recombination factor protein RarA [Campylobacter jejuni subsp. jejuni 81-176] gi|167004876|ref|ZP_02270634.1| recombination factor protein RarA [Campylobacter jejuni subsp. jejuni 81-176] gi|87250076|gb|EAQ73034.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 393 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP ++ GQ E K F K L H +F G G GKTT A+VVA+E G++ Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F G K +L +L N ++ + ++FIDEIHRLS +E+L ME+++L L+ Sbjct: 62 FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119 >gi|86149644|ref|ZP_01067874.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597357|ref|ZP_01100592.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|218561877|ref|YP_002343656.1| recombination factor protein RarA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839912|gb|EAQ57171.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190418|gb|EAQ94392.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359583|emb|CAL34367.1| helicase-like protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315928130|gb|EFV07448.1| ATPase family associated with various cellular activities (AAA) family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930207|gb|EFV09322.1| ATPase family associated with various cellular activities (AAA) family protein [Campylobacter jejuni subsp. jejuni 305] Length = 393 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP ++ GQ E K F K L H +F G G GKTT A+VVA+E G++ Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F G K +L +L N ++ + ++FIDEIHRLS +E+L ME+++L L+ Sbjct: 62 FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119 >gi|328771508|gb|EGF81548.1| hypothetical protein BATDEDRAFT_29838 [Batrachochytrium dendrobatidis JAM81] Length = 480 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 16/144 (11%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 L RP +L EF G V S L+ IE+ K ++ GPPG GKTTLA+++A+E Sbjct: 97 LARPTSLNEFFGHEAVVGQTSLLRQLIESKKVPC-----MILWGPPGSGKTTLARIIAKE 151 Query: 78 LGVNFRSTSGPV-----IAKAGDLAALLTNLE-DRDVLFIDEIHRLSIIVEEILYPAME- 130 LGV+F+ S + + K+ + A L + +LF+DEIHR + ++ P +E Sbjct: 152 LGVHFKEMSATIHNVSDVRKSCEEARTQRKLTGKKSILFLDEIHRFTKAQQDFFLPPVEQ 211 Query: 131 -DFQLDLMVGEGPSARSVKINLSR 153 +F E PS R LSR Sbjct: 212 GEFTFIAATTENPSFRVNAALLSR 235 >gi|57237203|ref|YP_178215.1| recombination factor protein RarA [Campylobacter jejuni RM1221] gi|57166007|gb|AAW34786.1| ATPase, AAA family protein [Campylobacter jejuni RM1221] gi|315057635|gb|ADT71964.1| Helicase-like protein [Campylobacter jejuni subsp. jejuni S3] Length = 393 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP ++ GQ E K F K L H +F G G GKTT A+VVA+E G++ Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F G K +L +L N ++ + ++FIDEIHRLS +E+L ME+++L L+ Sbjct: 62 FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119 >gi|308235719|ref|ZP_07666456.1| recombination factor protein RarA [Gardnerella vaginalis ATCC 14018] gi|311114730|ref|YP_003985951.1| replication-associated recombination protein A [Gardnerella vaginalis ATCC 14019] gi|310946224|gb|ADP38928.1| replication-associated recombination protein A [Gardnerella vaginalis ATCC 14019] Length = 457 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 35/187 (18%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIE-AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP ++E+ GQ A S L+ +K A V+ GPPG+GKTTLA +VAR+ Sbjct: 23 MRPSSIEDVLGQSHALKEGSPLRRLANPQSKGSLTAPSSVVLFGPPGVGKTTLAYIVARQ 82 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ A+L +R VLFIDE+HR S ++ L P++E Sbjct: 83 SGRVFEELSA-VTSGVKDVRAVLDRAHERLVSKGQETVLFIDEVHRFSKSQQDALLPSVE 141 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + + + E PS +K LSR + ++L +EDL Sbjct: 142 NRDVTFIGATTENPSFSIIKPLLSR---------------------SVVVKLESLSVEDL 180 Query: 189 KTIVQRG 195 T+++R Sbjct: 181 HTLIERA 187 >gi|86151263|ref|ZP_01069478.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315123797|ref|YP_004065801.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841610|gb|EAQ58857.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315017519|gb|ADT65612.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 393 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP ++ GQ E K F K L H +F G G GKTT A+VVA+E G++ Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F G K +L +L N ++ + ++FIDEIHRLS +E+L ME+++L L+ Sbjct: 62 FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119 >gi|326791959|ref|YP_004309780.1| MgsA AAA+ ATPase domain-containing protein [Clostridium lentocellum DSM 5427] gi|326542723|gb|ADZ84582.1| MgsA AAA+ ATPase domain-containing protein [Clostridium lentocellum DSM 5427] Length = 440 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 110/235 (46%), Gaps = 35/235 (14%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD ++ ED+ + S +RP L E GQ K+ A KA + L ++F Sbjct: 1 MDLFEYINEKKGNEDSPLASRMRPTKLSEIVGQHHLLEEDKLLYRAIKA--DKLQSLIFY 58 Query: 61 GPPGLGKTTLAQVVARELGVNF----RSTSGPV-IAKAGDLAALLTNLE-DRDVLFIDEI 114 GPPG GKTT+A+V+A +F +TSG I KA + A L ++ + ++FIDEI Sbjct: 59 GPPGTGKTTIAKVIANTTKAHFIVLNATTSGKAEIIKAVEDAKLQRSMTGKKTIIFIDEI 118 Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174 HR + ++ L P ED L L+ G + + ++R LI+ + L PL Sbjct: 119 HRFNKAQQDALLPYTEDGTLVLI---GATTENPYFEVNR-ALISRSLVFEL--KPL---- 168 Query: 175 GIPIRLNFYEIEDLKTIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 E +D+K I+ +RG VT++A +AMR+ G R A Sbjct: 169 ---------ETDDVKKIIKEAVYNKERGLGAYKADVTEDALDYLAMRTAGDARNA 214 >gi|284925490|gb|ADC27842.1| recombination factor protein RarA [Campylobacter jejuni subsp. jejuni IA3902] Length = 393 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP ++ GQ E K F K L H +F G G GKTT A+VVA+E G++ Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F G K +L +L N ++ + ++FIDEIHRLS +E+L ME+++L L+ Sbjct: 62 FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119 >gi|86153728|ref|ZP_01071931.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842689|gb|EAQ59901.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 393 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP ++ GQ E K F K L H +F G G GKTT A+VVA+E G++ Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F G K +L +L N ++ + ++FIDEIHRLS +E+L ME+++L L+ Sbjct: 62 FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119 >gi|317012260|gb|ADU82868.1| recombination factor protein RarA [Helicobacter pylori Lithuania75] Length = 391 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P +LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPTSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|87308504|ref|ZP_01090644.1| hypothetical protein DSM3645_14130 [Blastopirellula marina DSM 3645] gi|87288596|gb|EAQ80490.1| hypothetical protein DSM3645_14130 [Blastopirellula marina DSM 3645] Length = 461 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL EF GQ K+ +A + L+ VLF GPPG GKTTLAQ++ARE Sbjct: 34 MRPHTLAEFAGQTHFLGEGKLLRRLIQA--DRLNSVLFYGPPGTGKTTLAQLLARECRSR 91 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + V + +L +L +D R +LFIDEIHR + ++ L P +E+ Sbjct: 92 FEQLNA-VTSGVKELREVLQKAKDEIAVGGRRTLLFIDEIHRFNKSQQDALLPDVEN 147 >gi|312870086|ref|ZP_07730222.1| replication-associated recombination protein A [Lactobacillus oris PB013-T2-3] gi|311094389|gb|EFQ52697.1| replication-associated recombination protein A [Lactobacillus oris PB013-T2-3] Length = 441 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 16/172 (9%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M +E L +++ S + +RP TL EF GQ +V E + + L ++F G Sbjct: 1 MHQESLFAQSNSGATPLANRVRPSTLAEFVGQQHLIGPHRVLRELIEN--DQLSSLIFWG 58 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115 PPG+GKTTLA+++A++ +F + S V + D+ L+ E +R + FIDEIH Sbjct: 59 PPGVGKTTLAEIIAQQTKAHFVTFSA-VTSSIKDIRKLMQEAEQNREYGERTICFIDEIH 117 Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATT 161 R + ++ P +E + +++G S +IN LSR F L + TT Sbjct: 118 RFNKAQQDAFLPFVERGSI-ILIGATTENPSFEINSALLSRCKVFVLKSLTT 168 >gi|167756420|ref|ZP_02428547.1| hypothetical protein CLORAM_01953 [Clostridium ramosum DSM 1402] gi|167703828|gb|EDS18407.1| hypothetical protein CLORAM_01953 [Clostridium ramosum DSM 1402] Length = 444 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 130/283 (45%), Gaps = 44/283 (15%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MM ++ + +N+S E + LRP TL E+ GQ K+ + ++ + ++F Sbjct: 4 MMMKQQAMFKNMSNEPL-ANRLRPTTLTEYVGQRHLIGPGKILYQLI--NSDVVPSMVFW 60 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEI 114 GPPG+GKTTLA+++A + F + S V + D+ A++ +L ++ ++F+DEI Sbjct: 61 GPPGVGKTTLARIIANQTKAKFINFSA-VTSGIKDIRAVMKQAQEVQDLGEKTIVFVDEI 119 Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTRVGLLTN 168 HR + ++ P +E + +++G S +IN LSR F L A TT Sbjct: 120 HRFNKAQQDAFLPYVEQGSI-ILIGATTENPSFEINSALLSRCKVFVLKALTT------- 171 Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228 D FG+ L++ I +G K + + D+ IA S G R+A L Sbjct: 172 --DDLFGL---LHY------ALISPKGFKDQNVMIDDDLLYMIAGFSNGDARVALNTLEM 220 Query: 229 VRDFAEVAH------AKTITREIADAALLRLAIDKMGFDQLDL 265 + H +TI + I +LL DK G + ++ Sbjct: 221 AVLNGAITHDRIVVDKETIEQCINQKSLL---YDKKGEEHYNI 260 >gi|317050664|ref|YP_004111780.1| AAA ATPase central domain-containing protein [Desulfurispirillum indicum S5] gi|316945748|gb|ADU65224.1| AAA ATPase central domain protein [Desulfurispirillum indicum S5] Length = 420 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 103/236 (43%), Gaps = 44/236 (18%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +F GQ S L+ +E K L +F GPPG GKTTLA ++++ Sbjct: 17 LRPTDFADFVGQRHLLGERSLLRRMVEEDK-----LVSAIFTGPPGTGKTTLAHIISQRT 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 +F +T V A D+ A+ + ++ R VLFIDEIHR + I ++ L P +E Sbjct: 72 QSHF-ATLNAVNAGTADIRAICKDAKELRLHQGQRTVLFIDEIHRFNKIQQDALLPEVES 130 Query: 132 FQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + +++G + PS V LSR L L+ + ED+ Sbjct: 131 GNI-ILIGASTQNPSFALVPALLSRTVL---------------------FELHALDDEDM 168 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +V+RG G+ + DEA I G R R L + A + ITR+ Sbjct: 169 GRLVERGCAELGVTMDDEAREAIMTLCSGDGR---RCLNTIEAAALLCQGNHITRQ 221 >gi|154484609|ref|ZP_02027057.1| hypothetical protein EUBVEN_02325 [Eubacterium ventriosum ATCC 27560] gi|149734457|gb|EDM50374.1| hypothetical protein EUBVEN_02325 [Eubacterium ventriosum ATCC 27560] Length = 439 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 10/130 (7%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 S N +E S LRP+TL++ GQ K+ A KA + + ++F GPPG GKT Sbjct: 9 SVNSEKESPLASRLRPKTLDQVVGQEHIIGKDKLLYRAIKA--DKISSIIFYGPPGTGKT 66 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121 TLA+V+A +F + V K D+ ++ + + +LF+DEIHR + Sbjct: 67 TLAKVIANTTSADFMQLNATVAGKK-DMEDVVAKAKQNMAMSGRKTILFVDEIHRFNKGQ 125 Query: 122 EEILYPAMED 131 ++ L P +ED Sbjct: 126 QDYLLPFVED 135 >gi|313681270|ref|YP_004059008.1| recombination protein mgsa [Sulfuricurvum kujiense DSM 16994] gi|313154130|gb|ADR32808.1| Recombination protein MgsA [Sulfuricurvum kujiense DSM 16994] Length = 392 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 13/121 (10%) Query: 17 ADIS-LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 AD++ LLRP+ ++ GQ CS L+ E L H F GPPG GKTTLA+ Sbjct: 2 ADLTYLLRPKKFDDVVGQPHLCSPDSPLRSLCENGN-----LTHSFFYGPPGCGKTTLAR 56 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAM 129 ++A +G+ F + + K L + E+ + ++FIDE+HRL+ +E+L P M Sbjct: 57 IIAEVMGLPFYEFNATSL-KIEQLRKIFDQYENSLTKPLIFIDEVHRLAKNQQEVLLPVM 115 Query: 130 E 130 E Sbjct: 116 E 116 >gi|86741903|ref|YP_482303.1| recombination factor protein RarA [Frankia sp. CcI3] gi|86568765|gb|ABD12574.1| Recombination protein MgsA [Frankia sp. CcI3] Length = 519 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E GQ + S L+ +E A V+ GPPG GKTTLA +V+R Sbjct: 57 LRPRTLDEVVGQRHLLGPGSPLRRLVEGG-----ATTSVVLWGPPGTGKTTLAHIVSRAT 111 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 G FR S V A D+ A++ + R VLFIDE+HR + ++ L P++E Sbjct: 112 GRRFRELSA-VTAGVKDVRAVIDEARETLSTSGARTVLFIDEVHRFTRTQQDALLPSVE 169 >gi|283783289|ref|YP_003374043.1| recombination factor protein RarA [Gardnerella vaginalis 409-05] gi|283441280|gb|ADB13746.1| recombination factor protein RarA [Gardnerella vaginalis 409-05] Length = 462 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 35/187 (18%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIE-AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP ++E+ GQ A S L+ +K A V+ GPPG+GKTTLA +VAR+ Sbjct: 23 MRPSSIEDVLGQSHALKEGSPLRRLANPQSKGSLTAPSSVVLFGPPGVGKTTLAYIVARQ 82 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ A+L +R VLFIDE+HR S ++ L P++E Sbjct: 83 SGRVFEELSA-VTSGVKDVRAVLDRAHERLVSNGQETVLFIDEVHRFSKSQQDALLPSVE 141 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + + + E PS +K LSR + ++L +EDL Sbjct: 142 NRDVTFIGATTENPSFSIIKPLLSR---------------------SVVVKLASLSVEDL 180 Query: 189 KTIVQRG 195 T+++R Sbjct: 181 HTLIERA 187 >gi|261839269|gb|ACX99034.1| recombination factor protein RarA [Helicobacter pylori 52] Length = 391 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FLHAFFYGPPGVGKTSLAQIIARMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|317180683|dbj|BAJ58469.1| recombination factor protein RarA [Helicobacter pylori F32] Length = 391 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N + + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQHTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|298252773|ref|ZP_06976567.1| helicase subunit of the Holliday junction resolvase-like ATPase [Gardnerella vaginalis 5-1] gi|297533137|gb|EFH72021.1| helicase subunit of the Holliday junction resolvase-like ATPase [Gardnerella vaginalis 5-1] Length = 462 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 35/187 (18%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIE-AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP ++E+ GQ A S L+ +K A V+ GPPG+GKTTLA +VAR+ Sbjct: 23 MRPSSIEDVLGQSHALKEGSPLRRLANPQSKGSLTAPSSVVLFGPPGVGKTTLAYIVARQ 82 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ A+L +R VLFIDE+HR S ++ L P++E Sbjct: 83 SGRVFEELSA-VTSGVKDVRAVLDRAHERLVSNGQETVLFIDEVHRFSKSQQDALLPSVE 141 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + + + E PS +K LSR + ++L +EDL Sbjct: 142 NRDVTFIGATTENPSFSIIKPLLSR---------------------SVVVKLASLSVEDL 180 Query: 189 KTIVQRG 195 T+++R Sbjct: 181 HTLIERA 187 >gi|227889971|ref|ZP_04007776.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii ATCC 33200] gi|227849415|gb|EEJ59501.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii ATCC 33200] Length = 426 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 111/279 (39%), Gaps = 52/279 (18%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ L +F GQ + S K + K +L GPPG GKT+LAQ++ARE Sbjct: 10 LIRPKNLSQFVGQTKLISEGKPLYQIIKNHVPI--SLLLWGPPGTGKTSLAQIIAREYDY 67 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 + + + KA + + T VL IDEIHR++ +++ L P +E Sbjct: 68 PLATFNASIDNKAKLMQIINTYPYQSFVLLIDEIHRMTTTLQDYLLPYLES--------- 118 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF-GIPIRLNFYEIE-----DLKTIVQR 194 + LI ATT NP+ + R +E E D+ ++ R Sbjct: 119 -----------GKILLIGATTE-----NPIMSIVPAVRSRCQIFEFETLDDKDISEVLVR 162 Query: 195 GAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLL-------------RRVRDFAEVAH 237 K L + EA IA + G R+A LL + V++F + H Sbjct: 163 ALKEVFHLDEKQIDKEAINIIARSADGDLRVALNLLETIQAVNGEEISVKNVKEFLKGQH 222 Query: 238 AKTITREIADAALLRLAIDKMGFDQLD--LRYLTMIARN 274 + L D M D L YLT++ +N Sbjct: 223 FAYDRKATKHYDYLAAYSDSMAGSDTDAALYYLTVLLKN 261 >gi|283455715|ref|YP_003360279.1| AAA family ATPase [Bifidobacterium dentium Bd1] gi|283102349|gb|ADB09455.1| AAA family ATPase [Bifidobacterium dentium Bd1] Length = 467 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 42/208 (20%) Query: 22 LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP T++E GQ E ++ A++ A ++ GPPG+GKTTLA +VA++ Sbjct: 32 MRPSTVDEVVGQGRVLGEGSPLRRLANPASRKSLTAPSSIILFGPPGVGKTTLAYIVAKQ 91 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +L DR VLFIDE+HR S ++ L P++E Sbjct: 92 SGRVFEELSA-VTSGVKDVRDVLKRAHDRLVAEGKETVLFIDEVHRFSKSQQDALLPSVE 150 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDL 188 + + T IAATT + PL R + ++L E +DL Sbjct: 151 NRDV--------------------TFIAATTENPSFSVIKPLLSR-SVVVKLESLEPDDL 189 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSR 216 +T++ R AV DE +R R Sbjct: 190 RTLINR-------AVEDERGLNNEVRIR 210 >gi|242279432|ref|YP_002991561.1| recombination factor protein RarA [Desulfovibrio salexigens DSM 2638] gi|242122326|gb|ACS80022.1| AAA ATPase central domain protein [Desulfovibrio salexigens DSM 2638] Length = 420 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 11/138 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ ++EF GQ ++++ +EA + R++ L +L GPPG GK+TLA ++A+ G + Sbjct: 15 IRPKKIDEFFGQ----NHIRERVEAFE-RSKRLPSLLLFGPPGCGKSTLAMLLAKSTGRH 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 F S P + AL L D+L +DE+HR S ++ P +E ++ L+ Sbjct: 70 FMRISAP----ESGITALRKQLAGMDILILDELHRFSKAQQDFFLPILESGEITLLATTT 125 Query: 140 EGPSARSVKINLSRFTLI 157 E PS + LSR ++ Sbjct: 126 ENPSFSVTRQLLSRLHVL 143 >gi|283955370|ref|ZP_06372869.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 414] gi|283793130|gb|EFC31900.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 414] Length = 391 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP ++ GQ E K F K L H +F G G GKTT A+VVA+E G++ Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGIAGSGKTTFARVVAKEFGLD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F G K +L +L N ++ + ++FIDEIHRLS +E+L ME+++L L+ Sbjct: 62 FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119 >gi|94969641|ref|YP_591689.1| recombination factor protein RarA [Candidatus Koribacter versatilis Ellin345] gi|94551691|gb|ABF41615.1| Recombination protein MgsA [Candidatus Koribacter versatilis Ellin345] Length = 447 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 79/273 (28%), Positives = 117/273 (42%), Gaps = 46/273 (16%) Query: 14 QEDADISL---LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 Q D D L +RPRTL+EF GQ + L+V I+ + + ++F GPPG+GK Sbjct: 11 QSDRDRPLADRMRPRTLDEFAGQEHILAPGKPLRVQIDR-----DDIGSLIFWGPPGVGK 65 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIV 121 TTLA+++A +F S V++ ++ ++ + E R +LF+DEIHR + Sbjct: 66 TTLAKIIAAMTHADFIEFSA-VLSGIKEIKQVMADAERVRQYGTRTILFVDEIHRFNRAQ 124 Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTR--VGLLTNPLQDRF 174 ++ P +E + L+ E PS LSR +TL T VGLL L D Sbjct: 125 QDAFLPHVERGNIKLIGATTENPSFEVNSALLSRSRVYTLTPLTEEQIVGLLRRALTD-- 182 Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 +RG + D A IA + G R +L A Sbjct: 183 -----------------TERGLAELHVTAEDIALARIAAYASGDARSGYNVLEVAAQAAG 225 Query: 235 VAHAKTITREIADAALLR--LAIDKMGFDQLDL 265 + IT +I AL R L DK G + +L Sbjct: 226 ATSERIITEQIVADALQRRVLRYDKSGEEHYNL 258 >gi|331001822|ref|ZP_08325344.1| hypothetical protein HMPREF0491_00206 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412796|gb|EGG92179.1| hypothetical protein HMPREF0491_00206 [Lachnospiraceae oral taxon 107 str. F0167] Length = 441 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 9/125 (7%) Query: 14 QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +EDA + S LRP +L+ GQ K A KA + L ++F GPPG GKTT+A+ Sbjct: 13 KEDAPLASRLRPDSLDSIVGQEHILGKDKFLYRAIKA--DKLSSIIFFGPPGCGKTTIAK 70 Query: 73 VVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 V+A NF+ + + K + + + + +LFIDEIHR + ++ L Sbjct: 71 VIANTTKSNFKQINATMAGKKEMEEAVSEAKISFSMYKKKTILFIDEIHRFNKSQQDYLL 130 Query: 127 PAMED 131 P +ED Sbjct: 131 PFVED 135 >gi|168701195|ref|ZP_02733472.1| recombination factor protein RarA [Gemmata obscuriglobus UQM 2246] Length = 449 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E+ GQ + K+ A+ L+ ++F GPPG GKT LA V+A+ Sbjct: 22 MRPRTLDEYVGQTHFLAPGKLLRRML--LADRLNSLIFYGPPGCGKTALAHVIAKHTKSR 79 Query: 82 FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F+ + V A D+ LL L +R +LF+DEIHR + +++L P +ED Sbjct: 80 FKPLNA-VAAGTKDVRELLAEARGHLEELGERTILFLDEIHRFNRAQQDVLLPDVED 135 >gi|306823257|ref|ZP_07456633.1| replication-associated recombination protein A [Bifidobacterium dentium ATCC 27679] gi|309801882|ref|ZP_07695997.1| recombination factor protein RarA [Bifidobacterium dentium JCVIHMP022] gi|304553889|gb|EFM41800.1| replication-associated recombination protein A [Bifidobacterium dentium ATCC 27679] gi|308221438|gb|EFO77735.1| recombination factor protein RarA [Bifidobacterium dentium JCVIHMP022] Length = 458 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 42/208 (20%) Query: 22 LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP T++E GQ E ++ A++ A ++ GPPG+GKTTLA +VA++ Sbjct: 23 MRPSTVDEVVGQGRVLGEGSPLRRLANPASRKSLTAPSSIILFGPPGVGKTTLAYIVAKQ 82 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +L DR VLFIDE+HR S ++ L P++E Sbjct: 83 SGRVFEELSA-VTSGVKDVRDVLKRAHDRLVAEGRETVLFIDEVHRFSKSQQDALLPSVE 141 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDL 188 + + T IAATT + PL R + ++L E +DL Sbjct: 142 NRDV--------------------TFIAATTENPSFSVIKPLLSR-SVVVKLESLEPDDL 180 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSR 216 +T++ R AV DE +R R Sbjct: 181 RTLINR-------AVEDERGLNNEVRIR 201 >gi|258515784|ref|YP_003192006.1| recombination factor protein RarA [Desulfotomaculum acetoxidans DSM 771] gi|257779489|gb|ACV63383.1| AAA ATPase central domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 422 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 25/187 (13%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVG 61 E + R++++ + +RP++LEEF Q V + L+ IE ++L ++F G Sbjct: 5 EHAMERDMAKAAPLAARMRPKSLEEFEEQSTIVGPGTTLRRSIEN-----DSLMSMIFFG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEI 114 PPG GKT LA ++A +F + + V+A GD+ ++ + R VLFIDEI Sbjct: 60 PPGTGKTALANIIASMTKSHFETINA-VMAGVGDIRRVVDEAQKRRSYYGEKTVLFIDEI 118 Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN--------LSRFTLIAATTRVGLL 166 HR + ++ L P +E+ L ++G +N L RF L++ V LL Sbjct: 119 HRFNKAQQDALLPFVEN-GLITLIGSTTENPMFSVNRPILSRSQLYRFELLSTEAIVRLL 177 Query: 167 TNPLQDR 173 LQDR Sbjct: 178 QRALQDR 184 >gi|167948214|ref|ZP_02535288.1| Holliday junction DNA helicase B [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 76 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 41/56 (73%) Query: 274 NFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 F GGPVG++ ++A + E R IED++EP++IQQGF+ RTPRGR+ A+ H G+ Sbjct: 4 KFDGGPVGVDNLAAAIGEERGTIEDVLEPFLIQQGFMMRTPRGRVATQAAYLHFGL 59 >gi|317013863|gb|ADU81299.1| recombination factor protein RarA [Helicobacter pylori Gambia94/24] Length = 391 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +LL P +LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 ALLNPTSLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62 Query: 80 VN---FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 CPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|269218537|ref|ZP_06162391.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 848 str. F0332] gi|269211648|gb|EEZ77988.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 848 str. F0332] Length = 456 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 101/218 (46%), Gaps = 24/218 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ + A+A A V GPPG GKTT A ++AR + Sbjct: 36 MRPRTLDEVVGQGHLLAEGSPLRRLAEASGGAPSSVFLWGPPGTGKTTFAYLIARAGNRH 95 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V A +L A+++ R VLF+DE+HR + ++ L PA+E+ + Sbjct: 96 FEEVSA-VSAGVKELRAVVSAARQRLATSGRETVLFVDEVHRFNRAQQDALLPAVENGWV 154 Query: 135 DLMVG--EGPSARSVKINLSRFTLI-----AATTRVGLLTNPLQDRFGIPIRLNFY--EI 185 L+ E PS V LSR L+ A L+ L+D G RL+ + Sbjct: 155 TLVAATTENPSFTVVSPLLSRSLLVTLKGLAEEDIRTLVARALEDERGFAGRLSIAADAL 214 Query: 186 EDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRI 221 ++L I R + LT L EAA E A R+RG I Sbjct: 215 DNLVRIAGRDGRRSLTLL----EAAAEGA-RTRGETTI 247 >gi|171743312|ref|ZP_02919119.1| hypothetical protein BIFDEN_02443 [Bifidobacterium dentium ATCC 27678] gi|171278926|gb|EDT46587.1| hypothetical protein BIFDEN_02443 [Bifidobacterium dentium ATCC 27678] Length = 458 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 42/208 (20%) Query: 22 LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP T++E GQ E ++ A++ A ++ GPPG+GKTTLA +VA++ Sbjct: 23 MRPSTVDEVVGQGRVLGEGSPLRRLANPASRKSLTAPSSIILFGPPGVGKTTLAYIVAKQ 82 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ +L DR VLFIDE+HR S ++ L P++E Sbjct: 83 SGRVFEELSA-VTSGVKDVRDVLKRAHDRLVAEGKETVLFIDEVHRFSKSQQDALLPSVE 141 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDL 188 + + T IAATT + PL R + ++L E +DL Sbjct: 142 NRDV--------------------TFIAATTENPSFSVIKPLLSR-SVVVKLESLEPDDL 180 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSR 216 +T++ R AV DE +R R Sbjct: 181 RTLINR-------AVEDERGLNNEVRIR 201 >gi|302680609|ref|XP_003029986.1| hypothetical protein SCHCODRAFT_57429 [Schizophyllum commune H4-8] gi|300103677|gb|EFI95083.1| hypothetical protein SCHCODRAFT_57429 [Schizophyllum commune H4-8] Length = 552 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 12/141 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP TL EF GQ ++ + + A ++F GPPG GKTTLA+++A+ G Sbjct: 88 LRPSTLAEFVGQAHLTASDSLLMSTISNGAAG--SMIFWGPPGCGKTTLARLIAKHTGSI 145 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 FR S A D+ A+ ++ + VLF+DEIHR + ++I P +E + Sbjct: 146 FRELSA-TEAGIKDVRAVFEEAKNTLMLTGRKSVLFLDEIHRFNKAQQDIFLPYVEQGYI 204 Query: 135 DLM--VGEGPSARSVKINLSR 153 L+ E PS + V LSR Sbjct: 205 QLIGATTENPSFKLVSPLLSR 225 >gi|255725414|ref|XP_002547636.1| predicted protein [Candida tropicalis MYA-3404] gi|240135527|gb|EER35081.1| predicted protein [Candida tropicalis MYA-3404] Length = 498 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 75/132 (56%), Gaps = 11/132 (8%) Query: 22 LRPRTLEEFTGQ----VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP T EE+ GQ + ++ FI+ L ++F+GPPG+GKTTLA V++ E Sbjct: 31 IRPTTFEEYVGQDHLLNQQNGSIFTFIKLG-----YLPSMIFLGPPGVGKTTLASVISYE 85 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 + F S + G+L + E++ V+FIDEIHRL+ + ++ L P +E+ ++ ++ Sbjct: 86 CKLPFIELSATTLT-TGELKQIAMMHEEQIVVFIDEIHRLTKVQQDWLLPYVENGKM-VL 143 Query: 138 VGEGPSARSVKI 149 +G S S +I Sbjct: 144 IGATTSHPSKRI 155 >gi|78183967|ref|YP_376402.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. CC9902] gi|78168261|gb|ABB25358.1| Recombination protein MgsA [Synechococcus sp. CC9902] Length = 733 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 10/123 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEEF GQ + ++ A KA + + +++ GPPG+GKTTLA++VA + Sbjct: 25 MRPRTLEEFEGQQGILAEGRLLQRAIKA--DRVGNLILHGPPGVGKTTLARIVANHTRAH 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V+A DL A + + R +LFIDE+HR + ++ L P +E+ + Sbjct: 83 F-SNLNAVLAGVKDLRAEVDAAQQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTV 141 Query: 135 DLM 137 L+ Sbjct: 142 TLI 144 >gi|313902377|ref|ZP_07835780.1| Recombination protein MgsA [Thermaerobacter subterraneus DSM 13965] gi|313467308|gb|EFR62819.1| Recombination protein MgsA [Thermaerobacter subterraneus DSM 13965] Length = 513 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEEF GQ ++ A +A + L ++ GPPG GKTTLA+++AR + Sbjct: 37 MRPRTLEEFVGQQHLVGPGRLLRRAIEA--DRLGSIILWGPPGSGKTTLARIIARTTRAH 94 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 F + V A GDL ++ +R VLF+DE+HR + ++ L P +E Sbjct: 95 FEPLNA-VTAGVGDLRRVVEEARERWALEGRSTVLFVDEVHRWNRAQQDALLPHLE 149 >gi|310828857|ref|YP_003961214.1| hypothetical protein ELI_3289 [Eubacterium limosum KIST612] gi|308740591|gb|ADO38251.1| hypothetical protein ELI_3289 [Eubacterium limosum KIST612] Length = 446 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 15/162 (9%) Query: 11 NVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 N +++A +S+ +RP TL+EF GQ K+ +A + L V+F GPPG GKTT Sbjct: 12 NQIEDNAPLSVRMRPTTLDEFVGQTHIIGKGKLLYRLIEA--DKLSSVVFYGPPGTGKTT 69 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122 LA+++A F + V + ++ +L +D + +LFIDEIHR + + Sbjct: 70 LAKIIAHRTQAAFYELNA-VTSGKKEITEILDKAKDNLGIYNRKSILFIDEIHRFNKAQQ 128 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLIAATT 161 + L P++E L +++G +IN LSR T+ T Sbjct: 129 DALLPSVEG-GLVILIGATTENPYFEINSPLLSRSTIFEFKT 169 >gi|224282759|ref|ZP_03646081.1| recombination factor protein RarA [Bifidobacterium bifidum NCIMB 41171] gi|313139919|ref|ZP_07802112.1| recombination factor protein RarA [Bifidobacterium bifidum NCIMB 41171] gi|313132429|gb|EFR50046.1| recombination factor protein RarA [Bifidobacterium bifidum NCIMB 41171] Length = 468 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 119/279 (42%), Gaps = 65/279 (23%) Query: 22 LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPRT++E GQ E ++ ++K A ++ GPPG+GKTTLA +VAR+ Sbjct: 24 MRPRTVDEVLGQSHVLGEGSPLRRLANPSSKGSLTAPSSIIMFGPPGVGKTTLATIVARQ 83 Query: 78 LGVNFRS----TSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 G F TSG + D+ AL L VLF+DE+HR S ++ L PA+ Sbjct: 84 SGRAFEELSAVTSG--VKDVRDVLALARRRLVGDGTETVLFVDEVHRFSKSQQDALLPAV 141 Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 E+ + + E PS +K LSR + ++L E D Sbjct: 142 ENRDVTFIGATTENPSFSVIKPLLSRSVV---------------------VKLESLEPSD 180 Query: 188 LKTIVQRGAK----LTGLAVTDEAAC-EIAMRSRGTPR------------IAGRLLRRVR 230 L T++ R + L G D+AA EI + G R + G RR Sbjct: 181 LVTLIARAVEDKRGLNGEVKIDDAAVNEIVRMAGGDARKTLTILEAAAGAVTGDKARR-- 238 Query: 231 DFAEVAHAKTIT----REIADAALLRLAIDKMGFDQLDL 265 + A TIT ++ DAA +R DK G D D+ Sbjct: 239 ---KGARRPTITPDVVSQVMDAATVRY--DKDGDDHYDV 272 >gi|308182591|ref|YP_003926718.1| recombination factor protein RarA [Helicobacter pylori PeCan4] gi|308064776|gb|ADO06668.1| recombination factor protein RarA [Helicobacter pylori PeCan4] Length = 391 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++A L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAHALE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|297379642|gb|ADI34529.1| recombination factor protein RarA [Helicobacter pylori v225d] Length = 391 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++A L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAHALE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|109947662|ref|YP_664890.1| recombination factor protein RarA [Helicobacter acinonychis str. Sheeba] gi|109714883|emb|CAJ99891.1| conserved hypothetical helicase-like protein [Helicobacter acinonychis str. Sheeba] Length = 393 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P+ LE+F GQ +A +++ H F GPPG+GKT+LAQ++A L Sbjct: 5 SLLNPKRLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAHSLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 ++F +T K DL L N + + ++FIDE HRL+ +E L P ME Sbjct: 63 RPILSFNATD----FKLDDLRLKLKNYQHALLKPIVFIDETHRLNKTQQEFLLPIME 115 >gi|325107955|ref|YP_004269023.1| recombination protein MgsA [Planctomyces brasiliensis DSM 5305] gi|324968223|gb|ADY59001.1| Recombination protein MgsA [Planctomyces brasiliensis DSM 5305] Length = 453 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 23/168 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTLEEF GQ + + L+ +EA + L ++F GPPG GKTTLA+++AR+ Sbjct: 23 MRPRTLEEFAGQQQFLAEGRLLRRLLEADR-----LGSLIFYGPPGTGKTTLARLIARKT 77 Query: 79 GVNFRSTSGPVIAKAGDLAAL------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G + + AAL L R +LF+DE+H + +++L P +E Sbjct: 78 GAGWIGLNAASCGVKEVRAALQKASDSLATTGKRTILFVDELHHFTKTQQDVLLPELEQG 137 Query: 133 QLDLMVG---EGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQD 172 + + +G + P V LSR F ++ GLL N L D Sbjct: 138 TV-IFIGATTDNPFFALVSALLSRSHIFEFEPLSVEALKGLLKNALAD 184 >gi|33866690|ref|NP_898249.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. WH 8102] gi|33633468|emb|CAE08673.1| putative ATPase, AAA family [Synechococcus sp. WH 8102] Length = 751 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEEF GQ + ++ A KA + + +++ GPPG+GKTTLA++VA + Sbjct: 41 MRPRTLEEFEGQQGILAQGRLLRRAIKA--DRVGNLILHGPPGVGKTTLARIVANHTRAH 98 Query: 82 FRSTSGPVIAKAGDLAALLT----NLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V+A DL A + LE R +LFIDE+HR + ++ L P +E+ + Sbjct: 99 FSSLNA-VLAGVKDLRAEVDAAKLRLERHGLRSILFIDEVHRFNSAQQDALLPWVENGTV 157 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E P K +SR L Sbjct: 158 TLIGATTENPYFEVNKALVSRSRLF 182 >gi|116071416|ref|ZP_01468685.1| ATPase [Synechococcus sp. BL107] gi|116066821|gb|EAU72578.1| ATPase [Synechococcus sp. BL107] Length = 726 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 10/123 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEEF GQ + ++ A KA + + +++ GPPG+GKTTLA++VA + Sbjct: 25 MRPRTLEEFEGQQGILAEGRLLQRAIKA--DRVGNLILHGPPGVGKTTLARIVANHTRAH 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V+A DL A + + R +LFIDE+HR + ++ L P +E+ + Sbjct: 83 F-SNLNAVLAGVKDLRAEVDAAQQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTV 141 Query: 135 DLM 137 L+ Sbjct: 142 TLI 144 >gi|317010695|gb|ADU84442.1| recombination factor protein RarA [Helicobacter pylori SouthAfrica7] Length = 391 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +LL P +LE+F GQ +A +++ H F GPPG+GKT+LAQ++AR L Sbjct: 5 ALLNPTSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|168334208|ref|ZP_02692411.1| AAA ATPase central domain protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 420 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 116/264 (43%), Gaps = 44/264 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L + GQ + K+ A A + L ++F GPPG GKTT+A+V+A+ + Sbjct: 20 LRPVALAQIVGQEHILAKGKLLHRAITA--DKLQSMIFYGPPGSGKTTIAKVIAKTTTSH 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + + KA D+ L+ N +D ++FIDEIHR + ++ L P ED + Sbjct: 78 FETLNATTSGKA-DILRLVQNAKDSLATSSKHTIIFIDEIHRFNKAQQDALLPYAEDGTI 136 Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 L+ E P + LSR + + LTN E++ TI+ Sbjct: 137 ILIGATTENPYFEVNRALLSRSLIF----ELHSLTN-----------------ENIITIL 175 Query: 193 QRGAKLT--GLAV-----TDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAK-TITR 243 QR T GL V TD+AA IA + G R A L E A K IT Sbjct: 176 QRAITDTDKGLGVYNAILTDQAAEFIATHAAGDARAALNALELATLTTERSADGKINITA 235 Query: 244 EIADAALLR--LAIDKMGFDQLDL 265 ++A + + L DK G + D+ Sbjct: 236 QVASECMQKKFLNYDKKGDNHYDV 259 >gi|320534364|ref|ZP_08034850.1| recombination factor protein RarA [Actinomyces sp. oral taxon 171 str. F0337] gi|320133406|gb|EFW25868.1| recombination factor protein RarA [Actinomyces sp. oral taxon 171 str. F0337] Length = 468 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 73/149 (48%), Gaps = 28/149 (18%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKA----------------RAEALDHVLFVGP 62 +RPRTL+E GQ S L+ +E A+A +L V+ GP Sbjct: 26 MRPRTLDELEGQAHLLTPGSPLRRLVEPAEADKSSHAGEQGSGAVRSAGSSLSSVILWGP 85 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHR 116 PG GKTTLA +VAR G F S V A D+ A++T+ R VLFIDE+HR Sbjct: 86 PGTGKTTLAYLVARGSGRRFVELSA-VTAGVKDVRAVVTDARRRLAAGEETVLFIDEVHR 144 Query: 117 LSIIVEEILYPAMEDFQLDLMVG--EGPS 143 S ++ L P++E+ + L+ E PS Sbjct: 145 FSRSQQDALLPSVENRWVTLIAATTENPS 173 >gi|237733075|ref|ZP_04563556.1| ATPase [Mollicutes bacterium D7] gi|229383877|gb|EEO33968.1| ATPase [Coprobacillus sp. D7] Length = 440 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 36/234 (15%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MM ++ + +N+S E + LRP TL E+ GQ K+ + ++ + ++F Sbjct: 1 MMKQQAMF-KNMSNEPL-ANRLRPTTLTEYVGQRHLIGPGKILYQLI--NSDVVPSMVFW 56 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEI 114 GPPG+GKTTLA+++A + F + S V + D+ A++ +L ++ ++F+DEI Sbjct: 57 GPPGVGKTTLARIIANQTKAKFINFSA-VTSGIKDIRAVMKQAQEVQDLGEKTIVFVDEI 115 Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTRVGLLTN 168 HR + ++ P +E + +++G S +IN LSR F L A TT Sbjct: 116 HRFNKAQQDAFLPYVEQGSI-ILIGATTENPSFEINSALLSRCKVFVLKALTT------- 167 Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 D FG+ L++ I +G K + + D+ IA S G R+A Sbjct: 168 --DDLFGL---LHY------ALISPKGFKDQNVMIDDDLLYMIAGFSNGDARVA 210 >gi|229550919|ref|ZP_04439644.1| recombination ATPase [Lactobacillus rhamnosus LMS2-1] gi|258538369|ref|YP_003172868.1| recombination factor protein RarA [Lactobacillus rhamnosus Lc 705] gi|229315744|gb|EEN81717.1| recombination ATPase [Lactobacillus rhamnosus LMS2-1] gi|257150045|emb|CAR89017.1| AAA ATPase [Lactobacillus rhamnosus Lc 705] Length = 448 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 116/264 (43%), Gaps = 43/264 (16%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+TL+EF GQ KV + + + ++F GPPG+GKTTLA+++AR Sbjct: 16 SRMRPQTLDEFVGQTHLLGKNKVL--SNLIEHDEISSMIFWGPPGVGKTTLARIIARRTQ 73 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S V + ++ ++ E + ++F+DEIHR + ++ P +E Sbjct: 74 AQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGS 132 Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185 + +++G S ++N LSR F L T+ V LL L+D Sbjct: 133 I-ILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD------------- 178 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 RG L + ++ + +IA + G RIA L AE H ++ Sbjct: 179 -------PRGYGLQQVKISKKLLAQIADFANGDARIALNTLEMAVTNAETKH-DVVSVTQ 230 Query: 246 ADAALL----RLAIDKMGFDQLDL 265 AD A L L DK G + +L Sbjct: 231 ADVAQLLTKKALLYDKNGEEHYNL 254 >gi|199599229|ref|ZP_03212631.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001] gi|258507184|ref|YP_003169935.1| recombination factor protein RarA [Lactobacillus rhamnosus GG] gi|199589910|gb|EDY98014.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001] gi|257147111|emb|CAR86084.1| AAA ATPase [Lactobacillus rhamnosus GG] gi|259648554|dbj|BAI40716.1| recombination factor protein RarA [Lactobacillus rhamnosus GG] Length = 448 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 116/264 (43%), Gaps = 43/264 (16%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+TL+EF GQ KV + + + ++F GPPG+GKTTLA+++AR Sbjct: 16 SRMRPQTLDEFVGQTHLLGKNKVLSNLIEH--DEISSMIFWGPPGVGKTTLARIIARRTQ 73 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S V + ++ ++ E + ++F+DEIHR + ++ P +E Sbjct: 74 AQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGS 132 Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185 + +++G S ++N LSR F L T+ V LL L+D Sbjct: 133 I-ILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD------------- 178 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 RG L + ++ + +IA + G RIA L AE H ++ Sbjct: 179 -------PRGYGLQQVKISKKLLAQIADFANGDARIALNTLEMAVTNAETKH-DVVSVTQ 230 Query: 246 ADAALL----RLAIDKMGFDQLDL 265 AD A L L DK G + +L Sbjct: 231 ADVAQLLTKKALLYDKNGEEHYNL 254 >gi|315604260|ref|ZP_07879326.1| AAA family ATPase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313966|gb|EFU62017.1| AAA family ATPase [Actinomyces sp. oral taxon 180 str. F0310] Length = 447 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 16/158 (10%) Query: 1 MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEAL 54 + D E R V DAD L +RP +L+E GQ + + L+ + + A+ Sbjct: 3 LFDSESFDDRGVPACDADAPLAVRMRPTSLDEVVGQGHLLGEGAPLRRLLTPSSRDGVAV 62 Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRD 107 V+ GPPG GKTTLA ++AR G +F S V + GD+ ++ + + ++ Sbjct: 63 SSVVLWGPPGTGKTTLAYLIARASGRHFVELSA-VSSGVGDVRSVVQAARRRIASGDEET 121 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG--EGPS 143 VLF+DE+HR S ++ L PA+E+ + L+ E PS Sbjct: 122 VLFVDEVHRFSKAQQDSLLPAVENRWVVLVAATTENPS 159 >gi|15645640|ref|NP_207816.1| recombination factor protein RarA [Helicobacter pylori 26695] gi|2314168|gb|AAD08068.1| conserved hypothetical helicase-like protein [Helicobacter pylori 26695] Length = 391 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++A L Sbjct: 5 SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|331702365|ref|YP_004399324.1| AAA ATPase central domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129708|gb|AEB74261.1| AAA ATPase central domain protein [Lactobacillus buchneri NRRL B-30929] Length = 441 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 11/150 (7%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M +E L + N S +RP+TL++F GQ + KV E ++ + L ++F G Sbjct: 1 MKQESLFAGNQDGNQPLASRVRPKTLDQFVGQHQLVGKGKVLREIIES--DQLPSIIFWG 58 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115 PPG+GKTTLA+++A++ F + S V + ++ ++ + E + ++F+DEIH Sbjct: 59 PPGVGKTTLAEIIAKKTQAKFVTFSA-VTSGIKEIREIMKDAEANREMGGKTIVFVDEIH 117 Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPS 143 R + ++ P +E + L+ E PS Sbjct: 118 RFNKAQQDAFLPFVERGSITLIGATTENPS 147 >gi|299137091|ref|ZP_07030274.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX8] gi|298601606|gb|EFI57761.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX8] Length = 447 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 116/263 (44%), Gaps = 45/263 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+EF GQ L++ IE + + +LF GPPG+GKTTLA+++ARE Sbjct: 26 MRPRSLDEFFGQQHLLGPGMPLRLQIERDDSAS-----LLFWGPPGVGKTTLAKIIARET 80 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +F S V++ ++ ++ E R +LF+DEIHR + ++ P +E Sbjct: 81 QASFIEFSA-VLSGIKEIKQVMVEAEKAAEFGSRTILFVDEIHRFNKAQQDAFLPYVERG 139 Query: 133 QLDLMVGEGPSARSVKIN---LSR---FTL--IAATTRVGLLTNPLQDRFGIPIRLNFYE 184 + L +G S +IN LSR +TL + V LL LQD Sbjct: 140 TIRL-IGATTENPSFEINAALLSRCRVYTLRALGQDEVVALLQRALQD------------ 186 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +RG L V + A IA S G R A L E K +T+ Sbjct: 187 -------AERGLGALQLEVEEGALEAIASYSSGDARNALNALEVGAKLTEGRGEKLLTKA 239 Query: 245 IADAALLR--LAIDKMGFDQLDL 265 +A AL + L DK G D+ Sbjct: 240 LAAEALQQRVLLYDKKGEQHYDI 262 >gi|311113678|ref|YP_003984900.1| AAA family ATPase [Rothia dentocariosa ATCC 17931] gi|310945172|gb|ADP41466.1| AAA family ATPase [Rothia dentocariosa ATCC 17931] Length = 481 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 74/147 (50%), Gaps = 14/147 (9%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 SR SQ + + RPR ++E GQ S L+V A K+ V+ GPPG Sbjct: 25 SRTASQAPLAVRM-RPRHVDEVFGQAHLLTPGSPLRVLAGADKSGPAGPSSVILYGPPGT 83 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLS 118 GKTTLA V+AR G F S + A D+ A++ L DRD VLF+DEIHR + Sbjct: 84 GKTTLAHVIARAPGRKFVELSA-ITAGVKDVRAVMDQALLDRDMYGTTTVLFLDEIHRFT 142 Query: 119 IIVEEILYPAMEDFQLDLMVG--EGPS 143 ++ L P +E+ + L+ E PS Sbjct: 143 KAQQDALLPGVENRWVILVAATTENPS 169 >gi|184200999|ref|YP_001855206.1| hypothetical protein KRH_13530 [Kocuria rhizophila DC2201] gi|183581229|dbj|BAG29700.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 556 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 14/148 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ + + A A V+ GPPG GKTT+AQV+AR Sbjct: 41 MRPRTLDEVVGQKHLLRPGSPLRALVNGSSGPA-APSSVILWGPPGTGKTTIAQVIARGH 99 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMED 131 G F S + A D+ ++ L RD VLF+DEIHR + ++ L P +E+ Sbjct: 100 GTTFVELSA-LTAGVKDVRRVMDEALTARDLHGRTTVLFLDEIHRFTKAQQDALLPGVEN 158 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E PS + LSR ++ Sbjct: 159 GWVILVAATTENPSFSVISPLLSRSLML 186 >gi|300741584|ref|ZP_07071605.1| ATPase, AAA family [Rothia dentocariosa M567] gi|300380769|gb|EFJ77331.1| ATPase, AAA family [Rothia dentocariosa M567] Length = 481 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 74/147 (50%), Gaps = 14/147 (9%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 SR SQ + + RPR ++E GQ S L+V A K+ V+ GPPG Sbjct: 25 SRTASQAPLAVRM-RPRHVDEVFGQAHLLTPGSPLRVLAGADKSGPAGPSSVILYGPPGT 83 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLS 118 GKTTLA V+AR G F S + A D+ A++ L DRD VLF+DEIHR + Sbjct: 84 GKTTLAHVIARAPGRKFVELSA-ITAGVKDVRAVMDQALLDRDMYGTTTVLFLDEIHRFT 142 Query: 119 IIVEEILYPAMEDFQLDLMVG--EGPS 143 ++ L P +E+ + L+ E PS Sbjct: 143 KAQQDALLPGVENRWVILVAATTENPS 169 >gi|238924907|ref|YP_002938423.1| recombination factor protein RarA [Eubacterium rectale ATCC 33656] gi|238876582|gb|ACR76289.1| recombination factor protein RarA [Eubacterium rectale ATCC 33656] Length = 442 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 10/119 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP TL+E GQ K+ A KA + L ++F GPPG GKTTLA+V+A Sbjct: 20 SRMRPTTLDEVVGQQHIVGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTTLAKVIAHTTS 77 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + K D+ ++ ++ + +LFIDEIHR + ++ L P +ED Sbjct: 78 AEFMQINATSAGKK-DMEEVVEQAKNNQGMYQKKTILFIDEIHRFNKGQQDYLLPFVED 135 >gi|291525969|emb|CBK91556.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Eubacterium rectale DSM 17629] gi|291527297|emb|CBK92883.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Eubacterium rectale M104/1] Length = 442 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 10/119 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP TL+E GQ K+ A KA + L ++F GPPG GKTTLA+V+A Sbjct: 20 SRMRPTTLDEVVGQQHIVGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTTLAKVIAHTTS 77 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + K D+ ++ ++ + +LFIDEIHR + ++ L P +ED Sbjct: 78 AEFMQINATSAGKK-DMEEVVEQAKNNQGMYQKKTILFIDEIHRFNKGQQDYLLPFVED 135 >gi|149240319|ref|XP_001526035.1| hypothetical protein LELG_02593 [Lodderomyces elongisporus NRRL YB-4239] gi|146450158|gb|EDK44414.1| hypothetical protein LELG_02593 [Lodderomyces elongisporus NRRL YB-4239] Length = 516 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 19/166 (11%) Query: 1 MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLK-VFIEAAKARAEALDH 56 M E +S V+ ++SL +RP TL + GQ + K +F A R L Sbjct: 1 MTIEEETVSTQVADNGLELSLSEAVRPNTLANYVGQRHLLNEEKGIF--ANYIRMGYLPS 58 Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA-----LLTNLEDRDVLFI 111 +L +GPPG GKTTLA++VA+ G +TS + A L L+ + +++ V+FI Sbjct: 59 MLLIGPPGSGKTTLARLVAKSCGY---ATSNIIELSATTLTTENIKNLVNDCQEQLVVFI 115 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVG----EGPSARSVKINLSR 153 DEIHRLS + ++ L P +ED ++ +++G E P R K LSR Sbjct: 116 DEIHRLSKVQQDWLLPFVEDGKI-VLIGATTLETPLRRIRKAILSR 160 >gi|268315897|ref|YP_003289616.1| AAA ATPase central domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333431|gb|ACY47228.1| AAA ATPase central domain protein [Rhodothermus marinus DSM 4252] Length = 458 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 14/142 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ K+ A +A + L ++F GPPG GKTTLA+++AR + Sbjct: 23 MRPRTLDEFVGQEHILGPGKLLRRAIEA--DRLSSLIFYGPPGTGKTTLARIIARTSRAH 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + + V+A D+ + ++ R +LFIDE+HR + ++ L P +E+ + Sbjct: 81 FTALNA-VLAGVKDIRDAIEAAQERLRLHQQRTILFIDEVHRFNKAQQDALLPHVENGTV 139 Query: 135 DLMVG---EGPSARSVKINLSR 153 + +G E P +K +SR Sbjct: 140 -IFIGATTENPYFEVIKPLVSR 160 >gi|88807186|ref|ZP_01122698.1| putative ATPase, AAA family protein [Synechococcus sp. WH 7805] gi|88788400|gb|EAR19555.1| putative ATPase, AAA family protein [Synechococcus sp. WH 7805] Length = 759 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 16/167 (9%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 RE LL R D LRPR L+EF GQ + ++ A A + + +++ GPP Sbjct: 36 REALLRRQAPLADR----LRPRNLDEFVGQGAILAEGRLLRRAIAA--DRVGNLILHGPP 89 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN----LED---RDVLFIDEIHR 116 G+GKTTLA+++A +F S + V+A DL A ++ LE R +LFIDE+HR Sbjct: 90 GVGKTTLARIIANHTRAHFSSLNA-VLAGVKDLRAEVSEAGQRLERHGLRTILFIDEVHR 148 Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT 161 + ++ L P +E+ L L+ E P K +SR L T Sbjct: 149 FNSAQQDALLPWVENGTLTLIGATTENPYFEVNKALVSRSRLFRLQT 195 >gi|256825082|ref|YP_003149042.1| Recombination protein MgsA [Kytococcus sedentarius DSM 20547] gi|256688475|gb|ACV06277.1| Recombination protein MgsA [Kytococcus sedentarius DSM 20547] Length = 499 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 76/148 (51%), Gaps = 14/148 (9%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+LEE GQ E S L+ IE + A A +L+ GPPG GKTTLA++VA Sbjct: 35 MRPRSLEEVVGQREVLAPGSPLRRLIEGRRGVAGASSAILW-GPPGTGKTTLARLVADGA 93 Query: 79 GVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S V A D+ A++ + + VLF+DEIHR + ++ L P +ED Sbjct: 94 DRTFVQLSA-VTAGVKDVRAVMEAARRDKSMYGRQTVLFLDEIHRFTKAQQDALLPGVED 152 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E PS V LSR L+ Sbjct: 153 RTVILVAATTENPSFTVVTPLLSRSVLV 180 >gi|257068799|ref|YP_003155054.1| Recombination protein MgsA [Brachybacterium faecium DSM 4810] gi|256559617|gb|ACU85464.1| Recombination protein MgsA [Brachybacterium faecium DSM 4810] Length = 461 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 86/185 (46%), Gaps = 35/185 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ +E S L+ + + R A V+ GPPG GKTTLA VVA+ Sbjct: 33 MRPRTLDEVVGQHAALEPGSPLRRLVSSDDTRT-APASVILWGPPGTGKTTLAYVVAQSG 91 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F S V+A D+ ++ R VLF+DE+HR S ++ L P++E+ Sbjct: 92 DREFVEISA-VLAGVKDIREVVDQARSRLRTVGRETVLFVDEVHRFSKSQQDALLPSVEN 150 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLK 189 + TL+AATT + +PL R I + L E EDL Sbjct: 151 RWV--------------------TLVAATTENPYFSVISPLLSR-SIVLTLESLEQEDLD 189 Query: 190 TIVQR 194 +V R Sbjct: 190 ALVDR 194 >gi|259502469|ref|ZP_05745371.1| replication-associated recombination protein A [Lactobacillus antri DSM 16041] gi|259169612|gb|EEW54107.1| replication-associated recombination protein A [Lactobacillus antri DSM 16041] Length = 442 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 16/172 (9%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M +E L ++ S + +RP +L EF GQ +V E + + L ++F G Sbjct: 1 MHQESLFAQTNSAATPLANRVRPASLGEFVGQQHLIGPHRVLRELIEN--DQLSSLIFWG 58 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115 PPG+GKTTLA+++A++ +F + S V + D+ ++ E +R + FIDEIH Sbjct: 59 PPGVGKTTLAEIIAQQTKAHFVTFSA-VTSSIKDIRKIMQEAEQNREYGERTICFIDEIH 117 Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATT 161 R + ++ P +E + +++G S +IN LSR F L A TT Sbjct: 118 RFNKAQQDAFLPFVERGSI-ILIGATTENPSFEINSALLSRCKVFVLKALTT 168 >gi|256829632|ref|YP_003158360.1| AAA ATPase central domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578808|gb|ACU89944.1| AAA ATPase central domain protein [Desulfomicrobium baculatum DSM 4028] Length = 430 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 11/148 (7%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 V+Q+ LRP +L++F GQ L+ +++ + L +L GPPG GK+T+A Sbjct: 15 VAQKRPLAESLRPESLDDFIGQSHFRQRLRTLMQS-----KDLPSLLLFGPPGCGKSTVA 69 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++A+ F S P + + AL ++D+++L +DE+HR S ++ P +E Sbjct: 70 LLLAKHADKPFVRVSAPEVG----ITALRKQIQDKEILILDELHRYSKAQQDFFLPLLET 125 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLI 157 +L L+ E PS + LSR ++ Sbjct: 126 GELTLIATTTENPSFSVTRQLLSRLHVL 153 >gi|222056545|ref|YP_002538907.1| ATPase AAA [Geobacter sp. FRC-32] gi|221565834|gb|ACM21806.1| AAA ATPase central domain protein [Geobacter sp. FRC-32] Length = 438 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 51/265 (19%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT+ E+ GQ + L+ IE+ + L ++F GPPG GKTTLA+V+A Sbjct: 22 MRPRTIAEYVGQEQLLGEGKLLRRLIES-----DQLTSLIFWGPPGSGKTTLARVIAGAT 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 +F S +++ ++ ++ E+ R +LF+DEIHR + ++ P +E Sbjct: 77 SSHFIFFSA-ILSGIKEIREIVKEAEEVRKFQGRRTILFVDEIHRFNKSQQDAFLPYVEK 135 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLK 189 FT+I ATT PL R + + LN E+L+ Sbjct: 136 --------------------GVFTIIGATTENPSFEVIAPLLSRCKVLV-LNTLSEEELQ 174 Query: 190 TIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 I+ +RG LA+TD+A +A ++ G R+A L + A +A TIT Sbjct: 175 KIIRNALTDRERGLGNLDLAITDDALSYMAEQAGGDGRVA---LNTLETAARLAENGTIT 231 Query: 243 REIADAALLR--LAIDKMGFDQLDL 265 E A+ + L DK G + ++ Sbjct: 232 IENVREAVQKKPLLYDKGGEEHYNV 256 >gi|300813628|ref|ZP_07093956.1| recombination factor protein RarA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512264|gb|EFK39436.1| recombination factor protein RarA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 436 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 14/176 (7%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 + +N++ + LRP+ LEEF GQ K K+ + ++ +LF GPPG+GK Sbjct: 8 MEKNLNNKSPLADRLRPKNLEEFVGQDHIIGQGKFLSRLIKS--DRVNSLLFYGPPGVGK 65 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSII 120 TTLA+++A NF S V + +L +L +D ++FIDEIHR + Sbjct: 66 TTLAKIIANLTNKNFVELSA-VTSNIKELREVLQKAQDDFKFSNIETIVFIDEIHRFNKT 124 Query: 121 VEEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173 ++ L P +E + +++G E P K LSR ++ N L DR Sbjct: 125 QQDALLPYVER-GIIILIGATTENPYFEVNKALLSRLQILNLKALENKDMNKLIDR 179 >gi|206895474|ref|YP_002247556.1| AAA ATPase, central region [Coprothermobacter proteolyticus DSM 5265] gi|206738091|gb|ACI17169.1| AAA ATPase, central region [Coprothermobacter proteolyticus DSM 5265] Length = 459 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 99/218 (45%), Gaps = 43/218 (19%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ +A L+ IE K L ++ GPPG+GKT++A V+A Sbjct: 24 MRPRTLDEIVGQDKAFGKGTLLRKLIEEDK-----LTSLVLWGPPGVGKTSIAMVIANTT 78 Query: 79 GVNF----RSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F TSG I + + A + N+ R V+F+DEIH + ++ P +E Sbjct: 79 KARFLRFSAVTSGIKEIKEVLEDAEVQFNMGRRTVIFVDEIHHFNKTQQDAFLPYVEKGA 138 Query: 134 LDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + L+ E PS + LSR ++ + PL E ED+KTI Sbjct: 139 VVLICATTENPSFEIISPLLSRSKVV--------VLEPL-------------EAEDIKTI 177 Query: 192 V-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 + +RG + +TDE IA+ S G RIA Sbjct: 178 LYRALADKERGLGNERVVITDEQLMRIAVYSDGDARIA 215 >gi|54025615|ref|YP_119857.1| recombination factor protein RarA [Nocardia farcinica IFM 10152] gi|54017123|dbj|BAD58493.1| putative AAA ATPase [Nocardia farcinica IFM 10152] Length = 451 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 76/146 (52%), Gaps = 23/146 (15%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+LEE GQ + S L+ IE + A + VL GPPG GKTTLA ++++ Sbjct: 38 MRPRSLEEVVGQQHLLGPGSPLRRLIEGSGAAS-----VLLFGPPGTGKTTLASLISQAT 92 Query: 79 GVNFRSTSGPVIAKAG--------DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 G F + S AG DLA +R VLFIDE+HR S ++ L A+E Sbjct: 93 GRRFEALSA---LSAGVKEVRAVIDLARRRLTAGERTVLFIDEVHRFSKTQQDALLAAVE 149 Query: 131 DFQLDLMVG---EGPSARSVKINLSR 153 + ++ L+VG E PS V LSR Sbjct: 150 N-RIVLLVGATTENPSFSVVSPLLSR 174 >gi|57168339|ref|ZP_00367473.1| ATPase, AAA family [Campylobacter coli RM2228] gi|57020147|gb|EAL56821.1| ATPase, AAA family [Campylobacter coli RM2228] Length = 363 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 43/226 (19%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---RDV 108 + L H LF GP G GKTT A+VVA++ G++F G K DL ++ N ++ + + Sbjct: 2 QKLPHSLFFGPAGCGKTTFARVVAKDFGLDFYEFDGGNF-KLEDLRKIIENYKNSLYKPL 60 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 +FIDEIHRLS +E+L ME++ R +I A+T N Sbjct: 61 IFIDEIHRLSKTQQEMLLIPMENY--------------------RCIVIGASTE-----N 95 Query: 169 P-LQDRFGIPIRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 P GI R +E +DL+ +++R + + D A E ++S Sbjct: 96 PYFVLSSGIRSRSMLFEFKNLGQKDLELLLERVQQKIAFKIEDNAK-EFLLKS-----FD 149 Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYL 268 R + + +FA V + K IT E + LR ++ G D Y+ Sbjct: 150 ARAMLNLLEFALVLNEKEITLE--NLKKLRNGVNSEGVSSKDTHYI 193 >gi|329946639|ref|ZP_08294051.1| ATPase, AAA family [Actinomyces sp. oral taxon 170 str. F0386] gi|328526450|gb|EGF53463.1| ATPase, AAA family [Actinomyces sp. oral taxon 170 str. F0386] Length = 468 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 71/149 (47%), Gaps = 28/149 (18%) Query: 22 LRPRTLEEFTGQ-------------VEACSNLKVFIEAAKARAEA------LDHVLFVGP 62 +RPRTL+E GQ VE + A AR A L V+ GP Sbjct: 26 MRPRTLDELEGQTHLLTPGSPLRRLVEPSRTTEQVDSGAPARPNAHRLGASLSSVVLWGP 85 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHR 116 PG GKTTLA +VAR G F S V A D+ A++T+ R VLFIDE+HR Sbjct: 86 PGTGKTTLAYLVARGSGRRFVELSA-VTAGVKDVRAVVTDARRRLSAGEETVLFIDEVHR 144 Query: 117 LSIIVEEILYPAMEDFQLDLMVG--EGPS 143 S ++ L P++E+ + L+ E PS Sbjct: 145 FSRSQQDALLPSVENRWVTLIAATTENPS 173 >gi|111224626|ref|YP_715420.1| recombination factor protein RarA [Frankia alni ACN14a] gi|111152158|emb|CAJ63888.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Frankia alni ACN14a] Length = 534 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 63/119 (52%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E GQ + A S L+ +E + V+ GPPG GKTTLA +V+R Sbjct: 64 LRPQTLDEVVGQRHLLGAGSPLRRLVEGGGTTS-----VILWGPPGTGKTTLAHIVSRAT 118 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAME 130 G FR S V A D+ A++ R VLFIDE+HR + ++ L P++E Sbjct: 119 GRRFRELSA-VTAGVKDVRAVIDEARAASSASGTRTVLFIDEVHRFTRTQQDALLPSVE 176 >gi|207092026|ref|ZP_03239813.1| recombination factor protein RarA [Helicobacter pylori HPKX_438_AG0C1] Length = 367 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++A L Sbjct: 5 SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|308233738|ref|ZP_07664475.1| Recombination protein MgsA [Atopobium vaginae DSM 15829] gi|328943727|ref|ZP_08241192.1| AAA family ATPase [Atopobium vaginae DSM 15829] gi|327491696|gb|EGF23470.1| AAA family ATPase [Atopobium vaginae DSM 15829] Length = 475 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 14/119 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ +AC ++ A R + L ++ GPPG GKTTLAQ++A + Sbjct: 48 MRPRTLDEFVGQ-KACIGKDSWLRLAIER-DILSSIILYGPPGTGKTTLAQIIAHTSSAH 105 Query: 82 FRSTSGPVIAKAGDLAA---------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S ++A+ D+ L+TN+ + ++FIDEIHR S ++ L +E+ Sbjct: 106 FVDLSA-LLARVKDVREELAQARSRLLITNV--KTIMFIDEIHRFSRSQQDSLLKGVEN 161 >gi|225419780|ref|ZP_03762083.1| hypothetical protein CLOSTASPAR_06118 [Clostridium asparagiforme DSM 15981] gi|225041584|gb|EEG51830.1| hypothetical protein CLOSTASPAR_06118 [Clostridium asparagiforme DSM 15981] Length = 449 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 33/259 (12%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP TL+EF GQ + K+ + + + ++F GPPG+GKTTLA ++A+ Sbjct: 27 SRLRPETLDEFVGQNQLLGEGKILRQIIDQ--DNIPSMIFWGPPGVGKTTLASIIAKRTH 84 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S V + ++ ++ E R V+F+DEIHR + ++ P +E Sbjct: 85 AEFINFSA-VTSGIKEIKEVMARAEQGRRMGKRTVVFVDEIHRFNKAQQDAFLPYVEKGS 143 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGL----LTNPLQDRFGIPIRLNFYEIEDLK 189 + +++G S +IN + + GL LT L++ P Sbjct: 144 I-ILIGATTENPSFEINAALLSRCRVFVLQGLGEEDLTRLLKNALQSP------------ 190 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADA 248 RG + ++D IA S G R A +L E++ K T+T EI + Sbjct: 191 ----RGFGYLNVDISDAMLGAIARFSGGDARTALNILEMAVSNGEISAEKTTVTPEILEQ 246 Query: 249 ALLR--LAIDKMGFDQLDL 265 + R L DK G + +L Sbjct: 247 CMSRKSLLYDKNGEEHYNL 265 >gi|313143847|ref|ZP_07806040.1| recombination factor protein RarA [Helicobacter cinaedi CCUG 18818] gi|313128878|gb|EFR46495.1| recombination factor protein RarA [Helicobacter cinaedi CCUG 18818] Length = 384 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 4/86 (4%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---R 106 + AL H F GPPG GKTTLA ++A+EL F S + K +L + + E+ + Sbjct: 3 KHNALSHCFFYGPPGSGKTTLAALIAKELNKPFMSYNATSF-KIEELRQFVKSYENTLFQ 61 Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF 132 ++FIDE+HRL+ +E+L P ME + Sbjct: 62 PIIFIDEVHRLTRTQQEVLLPIMESY 87 >gi|239917777|ref|YP_002957335.1| Recombination protein MgsA [Micrococcus luteus NCTC 2665] gi|281413730|ref|ZP_06245472.1| recombination factor protein RarA [Micrococcus luteus NCTC 2665] gi|239838984|gb|ACS30781.1| Recombination protein MgsA [Micrococcus luteus NCTC 2665] Length = 465 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 13/134 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL++ GQ + S L+ E A V+ GPPG+GKTTLA V+AR Sbjct: 34 MRPRTLDDVLGQRHLMRPGSPLRKLAEPDPDSAAGPSSVILYGPPGIGKTTLAHVIARAP 93 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-DRD------VLFIDEIHRLSIIVEEILYPAMED 131 G F S + A D+ ++ + +RD VLF+DEIHR S ++ L P +E+ Sbjct: 94 GRTFTELSA-ITAGVKDVRQVMEQAQRERDLYGRTTVLFLDEIHRFSKAQQDALLPGVEN 152 Query: 132 FQLDLMVG--EGPS 143 + L+ E PS Sbjct: 153 RWVVLVAATTENPS 166 >gi|332673268|gb|AEE70085.1| ATPase [Helicobacter pylori 83] Length = 391 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++A L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|94265038|ref|ZP_01288806.1| AAA ATPase, central region [delta proteobacterium MLMS-1] gi|93454471|gb|EAT04759.1| AAA ATPase, central region [delta proteobacterium MLMS-1] Length = 441 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 122/263 (46%), Gaps = 49/263 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L +F GQ + K+ + R+ L +L GPPG GKTTLA+++AR+ G + Sbjct: 14 MRPASLAQFVGQRHLLGDDKLL--SGLLRSGHLPSLLLWGPPGSGKTTLARLLARQSGAD 71 Query: 82 FRSTSGPVIAKAGDLAALLT----NLEDR---DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V++ ++ A++ NLE VLF+DEIHR + ++ P +E L Sbjct: 72 FIFFSA-VLSGVKEIRAIVERSRLNLEKSGRGSVLFVDEIHRFNKGQQDAFLPHVESGLL 130 Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 L+ E PS F +IA PL R + + LN E ++L I+ Sbjct: 131 TLIGATTENPS----------FQVIA----------PLLSRCRVLV-LNALEEDELGEIL 169 Query: 193 -------QRGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITRE 244 Q+G + L+++DEAA + + G R + G L E+A A ++ Sbjct: 170 AAALSDRQQGLGESELSISDEAAAHLIAVADGDARNLLGSL--------EIAAALVADKK 221 Query: 245 IADAALLRLAIDKMGFDQLDLRY 267 AD + LA + + LRY Sbjct: 222 AADTGRIELADIEEAIQRKSLRY 244 >gi|328948385|ref|YP_004365722.1| ATPase AAA central domain protein [Treponema succinifaciens DSM 2489] gi|328448709|gb|AEB14425.1| AAA ATPase central domain protein [Treponema succinifaciens DSM 2489] Length = 805 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 8/116 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E+ GQ ++ A A + L V+F GPPG GKTTLA+V+A N Sbjct: 19 MRPRTLDEYIGQEHIVGKGRLLRRAIAA--DQLTSVIFYGPPGTGKTTLARVIANHTSSN 76 Query: 82 FRSTSGPV-----IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 F + + + I KA A NL R +LF+DE+HR + ++ L P +E+ Sbjct: 77 FITLNAVLTGVADIRKAISDAETQKNLYKRKTILFVDEVHRWNKSQQDALLPWVEN 132 >gi|300854386|ref|YP_003779370.1| putative helicase subunit of Holliday junction resolvase [Clostridium ljungdahlii DSM 13528] gi|300434501|gb|ADK14268.1| predicted helicase subunit of Holliday junction resolvase [Clostridium ljungdahlii DSM 13528] Length = 438 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLEEF GQ S K+ A + + +F GPPG+GKTTLA+++A N Sbjct: 22 MRPETLEEFIGQEHILSKGKMLYRAI--VTDNISSAIFYGPPGVGKTTLARIIANTTKAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F S V + D+ ++ +D + +LFIDEIHR + ++ + A+E Sbjct: 80 FYELSA-VNSGTSDVKKIIKEADDNQKFYSKKTILFIDEIHRFNKAQQDSVLNAVE 134 >gi|260435731|ref|ZP_05789701.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. WH 8109] gi|260413605|gb|EEX06901.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. WH 8109] Length = 722 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEEF GQ ++ ++ A KA + + +++ GPPG+GKTTLA+++A + Sbjct: 25 MRPRTLEEFEGQSGILADGRLLRRAIKA--DRVGNLILHGPPGVGKTTLARIIANHTRAH 82 Query: 82 FRSTSGPVIAKAGDLA----ALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMED 131 F S + V+A DL A LE R +LFIDE+HR + ++ L P +E+ Sbjct: 83 FSSLNA-VLAGIKDLRIEVDAARQRLERHGLRTILFIDEVHRFNSAQQDALLPWVEN 138 >gi|217033284|ref|ZP_03438715.1| hypothetical protein HP9810_9g37 [Helicobacter pylori 98-10] gi|216944225|gb|EEC23650.1| hypothetical protein HP9810_9g37 [Helicobacter pylori 98-10] Length = 391 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++A L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|289706214|ref|ZP_06502577.1| recombination factor protein RarA [Micrococcus luteus SK58] gi|289557053|gb|EFD50381.1| recombination factor protein RarA [Micrococcus luteus SK58] Length = 465 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 13/134 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL++ GQ + S L+ E A V+ GPPG+GKTTLA V+AR Sbjct: 34 MRPRTLDDVLGQRHLMRPGSPLRKLAEPDPDSAAGPSSVILYGPPGIGKTTLAHVIARAP 93 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-DRD------VLFIDEIHRLSIIVEEILYPAMED 131 G F S + A D+ ++ + +RD VLF+DEIHR S ++ L P +E+ Sbjct: 94 GRTFTELSA-ITAGVKDVRQVMEQAQRERDLYGRTTVLFLDEIHRFSKAQQDALLPGVEN 152 Query: 132 FQLDLMVG--EGPS 143 + L+ E PS Sbjct: 153 RWVVLVAATTENPS 166 >gi|160878660|ref|YP_001557628.1| recombination factor protein RarA [Clostridium phytofermentans ISDg] gi|160427326|gb|ABX40889.1| AAA ATPase central domain protein [Clostridium phytofermentans ISDg] Length = 444 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 11/138 (7%) Query: 2 MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + N ++++ + S LRP L E GQ K+ A A+ L V+F Sbjct: 1 MDLFEYMRENTKEKESPLASRLRPTKLTEVVGQSHIIGEDKLLYRAI--MADKLGSVIFY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113 GPPG GKTTLA+V+A NF+ + K D+ A++ + + +LF+DE Sbjct: 59 GPPGTGKTTLAKVIANTTSSNFQQINATSAGKK-DMEAVIEQAKQTLGMYGKKTILFVDE 117 Query: 114 IHRLSIIVEEILYPAMED 131 IHR + ++ L P +ED Sbjct: 118 IHRFNKGQQDYLLPFVED 135 >gi|118586319|ref|ZP_01543772.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163] gi|118433245|gb|EAV39958.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163] Length = 467 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 22/192 (11%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+++ L N S +RP+TLE+F GQ KV E + + + ++F Sbjct: 23 MIEQASLFENNSENGRPLASRVRPQTLEQFVGQENLLGPGKVLRELIEK--DQISSMIFW 80 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG--DLAALLTNLED------RDVLFID 112 GPPG+GKTTLA+++A F + S A +G ++ ++ + E+ R ++FID Sbjct: 81 GPPGVGKTTLAEIIAHRSKAKFITFSA---ATSGIKEIRKIMKDAENNRQFGVRTIVFID 137 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTL--IAATTRVG 164 EIHR + ++ P +E + +++G S +IN LSR F L + ++ V Sbjct: 138 EIHRFNKAQQDSFLPYVEKGSI-ILIGATTENPSFEINSALLSRSKVFVLRQLKSSDIVK 196 Query: 165 LLTNPLQDRFGI 176 LL N L++ G Sbjct: 197 LLENALKNPHGF 208 >gi|157165173|ref|YP_001465949.1| recombination factor protein RarA [Campylobacter concisus 13826] gi|112801797|gb|EAT99141.1| ATPase, AAA family protein [Campylobacter concisus 13826] Length = 394 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 10/122 (8%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 + RP+ L+E GQ + FI +K + H +F GP G GKT+ A+ VA Sbjct: 7 MFRPKNLDEICGQKAVKTAFLKFIATSK-----IPHSIFYGPAGCGKTSFARAVASGANY 61 Query: 81 NFRSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +F G + K D +L N E ++ + FIDEIHRLS +E L ME+++ L+ Sbjct: 62 DFYEFDGGNL-KIDDFRKILKNYENALNKPLFFIDEIHRLSKTQQEALLIPMENYKA-LV 119 Query: 138 VG 139 +G Sbjct: 120 IG 121 >gi|116491207|ref|YP_810751.1| recombination factor protein RarA [Oenococcus oeni PSU-1] gi|116091932|gb|ABJ57086.1| Recombination protein MgsA [Oenococcus oeni PSU-1] Length = 445 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 22/192 (11%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+++ L N S +RP+TLE+F GQ KV E + + + ++F Sbjct: 1 MIEQASLFENNSENGRPLASRVRPQTLEQFVGQENLLGPGKVLRELIEK--DQISSMIFW 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG--DLAALLTNLED------RDVLFID 112 GPPG+GKTTLA+++A F + S A +G ++ ++ + E+ R ++FID Sbjct: 59 GPPGVGKTTLAEIIAHRSKAKFITFSA---ATSGIKEIRKIMKDAENNRQFGVRTIVFID 115 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTL--IAATTRVG 164 EIHR + ++ P +E + +++G S +IN LSR F L + ++ V Sbjct: 116 EIHRFNKAQQDSFLPYVEKGSI-ILIGATTENPSFEINSALLSRSKVFVLRQLKSSDIVK 174 Query: 165 LLTNPLQDRFGI 176 LL N L++ G Sbjct: 175 LLENALKNPHGF 186 >gi|302671634|ref|YP_003831594.1| recombination factor protein RarA [Butyrivibrio proteoclasticus B316] gi|302396107|gb|ADL35012.1| recombination factor protein RarA [Butyrivibrio proteoclasticus B316] Length = 440 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 11/138 (7%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD + +N ++++ ++ +RPRTL+E GQ + K+ A A + L ++ Sbjct: 1 MDLFDYMRQNNKEKESPLAARMRPRTLDEVVGQQHIIARDKLLYRAISA--DKLSSIILY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113 GPPG GKTTLA+V+A F + IA D+ ++ +D + +LFIDE Sbjct: 59 GPPGTGKTTLAKVIAGTTKAEFMQINA-TIAGKKDMEDVVNKAKDNLGMYGKKTILFIDE 117 Query: 114 IHRLSIIVEEILYPAMED 131 IHR + ++ L P +ED Sbjct: 118 IHRFNKGQQDYLLPFVED 135 >gi|290890726|ref|ZP_06553796.1| hypothetical protein AWRIB429_1186 [Oenococcus oeni AWRIB429] gi|290479701|gb|EFD88355.1| hypothetical protein AWRIB429_1186 [Oenococcus oeni AWRIB429] Length = 445 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 22/192 (11%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+++ L N S +RP+TLE+F GQ KV E + + + ++F Sbjct: 1 MIEQASLFENNSENGRPLASRVRPQTLEQFVGQENLLGPGKVLRELIEK--DQISSMIFW 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG--DLAALLTNLED------RDVLFID 112 GPPG+GKTTLA+++A F + S A +G ++ ++ + E+ R ++FID Sbjct: 59 GPPGVGKTTLAEIIAHRSKAKFITFSA---ATSGIKEIRKIMKDAENNRQFGVRTIVFID 115 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTL--IAATTRVG 164 EIHR + ++ P +E + +++G S +IN LSR F L + ++ V Sbjct: 116 EIHRFNKAQQDSFLPYVEKGSI-ILIGATTENPSFEINSALLSRSKVFVLRQLKSSDIVK 174 Query: 165 LLTNPLQDRFGI 176 LL N L++ G Sbjct: 175 LLENALKNPHGF 186 >gi|84496693|ref|ZP_00995547.1| conserved ATP/GTP binding protein [Janibacter sp. HTCC2649] gi|84383461|gb|EAP99342.1| conserved ATP/GTP binding protein [Janibacter sp. HTCC2649] Length = 457 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 14/152 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +++E GQ + S L+ IE + A +L +L+ GPPG GKTTLA +VA Sbjct: 27 MRPASIDEVRGQDAVLRPGSPLRRLIEGSGGTAGSLSAILW-GPPGTGKTTLAHLVATAA 85 Query: 79 GVNFRSTSGPVIAKAGDLAALLT------NLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 F S V A D+ A++ +L DR VLF+DEIHR + ++ L P +E Sbjct: 86 NREFVELSA-VTAGVKDVRAVMEAAARNRDLYDRQTVLFLDEIHRFTKAQQDALLPGVET 144 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLIAATT 161 Q+ L+ E PS + LSR LI T+ Sbjct: 145 RQVILVAATTENPSFSVIAPLLSRSMLITLTS 176 >gi|227893680|ref|ZP_04011485.1| crossover junction endodeoxyribonuclease ATPase [Lactobacillus ultunensis DSM 16047] gi|227864540|gb|EEJ71961.1| crossover junction endodeoxyribonuclease ATPase [Lactobacillus ultunensis DSM 16047] Length = 431 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP TL+E GQ + K + K +L GPPG GKTTLA V+A L + Sbjct: 10 LMRPNTLDEMIGQEHLLTPGKPLYQIIKNHVSI--SLLLWGPPGCGKTTLAHVMANTLKI 67 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 F + + K+ A + + E+ VL +DEIHRL+ +++ L P +E+ + L+VG Sbjct: 68 PFEKFNASIQNKSQLQALVRKHPEESFVLLLDEIHRLTKPIQDYLLPYLENGHI-LLVG 125 >gi|332670524|ref|YP_004453532.1| AAA ATPase central domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339562|gb|AEE46145.1| AAA ATPase central domain protein [Cellulomonas fimi ATCC 484] Length = 458 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 15/136 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAK--ARAEALDHVLFVGPPGLGKTTLAQVVAR 76 +RPR+L+E GQ A S L+ +E A AR A V+ GPPG GKTTLA +VA Sbjct: 27 MRPRSLDEVAGQEHLLVAGSPLRRLVEPATEAARRAAPSSVVLWGPPGTGKTTLAYLVAT 86 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129 G F S V A D+ A++ + R VLF+DE+HR + ++ L P++ Sbjct: 87 TSGRRFVELSA-VTAGVKDVRAVIDDARRRLATDGGETVLFVDEVHRFTKAQQDALLPSV 145 Query: 130 EDFQLDLMVG--EGPS 143 E+ + L+ E PS Sbjct: 146 ENRWVTLVAATTENPS 161 >gi|225872629|ref|YP_002754086.1| ATPase, AAA family [Acidobacterium capsulatum ATCC 51196] gi|225792545|gb|ACO32635.1| ATPase, AAA family [Acidobacterium capsulatum ATCC 51196] Length = 448 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 115/263 (43%), Gaps = 44/263 (16%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+EF GQ L+V IE A + ++F GPPG+GKTTLA++VA Sbjct: 25 MRPRTLDEFRGQQHLLGLGKPLRVQIERDDAAS-----MIFWGPPGVGKTTLAKIVAETT 79 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +F S V++ ++ ++ + E R +LF+DEIHR + ++ P +E Sbjct: 80 HASFIEFSA-VLSGIKEIKQVMADAEKASTYGSRTILFVDEIHRFNRAQQDAFLPYVERG 138 Query: 133 QLDLM--VGEGPSARSVKINLSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185 + L+ E PS LSR +TL A T V LL DR Sbjct: 139 TIRLIGATTENPSFEVNAALLSRCRVYTLQALTEDDLVSLLERAAADR------------ 186 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITRE 244 +RG G+ +A IA S G R A L A+ ++RE Sbjct: 187 -------ERGLGNMGVTFDADALALIADYSSGDARNALNALEVAAKLAQSREENPRVSRE 239 Query: 245 IADAALLR--LAIDKMGFDQLDL 265 +A AL + L DK G + +L Sbjct: 240 LAQEALQQRVLLYDKQGEEHYNL 262 >gi|87125265|ref|ZP_01081111.1| putative ATPase, AAA family protein [Synechococcus sp. RS9917] gi|86167034|gb|EAQ68295.1| putative ATPase, AAA family protein [Synechococcus sp. RS9917] Length = 738 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 40/215 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L++F GQ + ++ A A + + ++L GPPG+GKTTLA+++A + Sbjct: 24 LRPRDLDDFVGQGAILAEGRLLRRAIAA--DRVGNLLLHGPPGVGKTTLARIIANHTRAH 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V+A +L A + R +LFIDE+HR + ++ L P +E+ L Sbjct: 82 FSSLNA-VLAGVKELRAEVDAARQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTL 140 Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 L+ E P K +SR L RL E EDL ++ Sbjct: 141 TLIGATTENPYFEVNKALVSRSRL---------------------FRLQALEAEDLHRLL 179 Query: 193 Q-------RGAKLTGLAVTDEAACEIAMRSRGTPR 220 Q RG ++VT EAA + + G R Sbjct: 180 QRALSDSERGYGNRAVSVTAEAAAHLVDVANGDAR 214 >gi|225377756|ref|ZP_03754977.1| hypothetical protein ROSEINA2194_03407 [Roseburia inulinivorans DSM 16841] gi|225210433|gb|EEG92787.1| hypothetical protein ROSEINA2194_03407 [Roseburia inulinivorans DSM 16841] Length = 443 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 14/131 (10%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 +N +E S LRP TL+E GQ K+ A KA + L ++ GPPG GKTT Sbjct: 10 QNREKESPLASRLRPATLDEMVGQQHIIGKDKLLYRAIKA--DKLSSIILYGPPGTGKTT 67 Query: 70 LAQVVARELGVNF---RSTSG------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 LA+V+A F +TS VIA+A + + + +LFIDEIHR + Sbjct: 68 LAKVIANTTSAEFLQINATSAGKKDMEDVIAQAKNNQGMYGK---KTILFIDEIHRFNKG 124 Query: 121 VEEILYPAMED 131 ++ L P +ED Sbjct: 125 QQDYLLPFVED 135 >gi|78188604|ref|YP_378942.1| recombination factor protein RarA [Chlorobium chlorochromatii CaD3] gi|78170803|gb|ABB27899.1| Recombination protein MgsA [Chlorobium chlorochromatii CaD3] Length = 453 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L+E GQ V A + L+ F+E+ + + V+F G PG GKTTLA++ A L Sbjct: 37 VRPRMLDEVAGQQHLVGANAPLRRFLESGQ-----MPSVIFWGAPGCGKTTLAEICASTL 91 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +F S + KA D+A + R +LFIDEIHR + ++ L A+E Sbjct: 92 QCHFEQLSAVDAGVKEVRKALDIATRVRQAGQRCLLFIDEIHRFNKSQQDTLLHALEQ-G 150 Query: 134 LDLMVGEGPSARSVKIN 150 L L++G S ++N Sbjct: 151 LILLIGATTENPSFEVN 167 >gi|292670832|ref|ZP_06604258.1| replication-associated recombination protein A [Selenomonas noxia ATCC 43541] gi|292647453|gb|EFF65425.1| replication-associated recombination protein A [Selenomonas noxia ATCC 43541] Length = 472 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 111/237 (46%), Gaps = 42/237 (17%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--- 57 M ++ GL R Q A+ +RP++LEEF GQ + KV ++ DH+ Sbjct: 32 MDEQGGLFERTAYQPLAE--RVRPQSLEEFVGQEHLLGSGKVLRRLIES-----DHITSM 84 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111 +F GPPG+GKTTLAQ++A + F + S V + D+ ++ + DR ++F+ Sbjct: 85 IFWGPPGVGKTTLAQIIAAQTKAKFITFSA-VTSGIKDIRTVMQEADRRRIYGDRIIVFV 143 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171 DEIHR + ++ P +E + +++G S +IN + + + RV +L Sbjct: 144 DEIHRFNKAQQDAFLPFVEKGSI-VLIGATTENPSFEIN----SALLSRCRVFVLQG--- 195 Query: 172 DRFGIPIRLNFYEIEDLKTIVQ------RGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 I+D+K ++Q R ++ + ++DE IA + G R A Sbjct: 196 -----------LTIDDIKRLLQHALSSDRELRVLRIHLSDEGIAAIAAFANGDARSA 241 >gi|197118824|ref|YP_002139251.1| recombination factor protein RarA [Geobacter bemidjiensis Bem] gi|197088184|gb|ACH39455.1| stalled replication fork rescue ATPase [Geobacter bemidjiensis Bem] Length = 434 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 119/258 (46%), Gaps = 37/258 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR++ E+ GQ V L+ IE+ + L ++F GPPG GKTTLA+++A Sbjct: 19 MRPRSMAEYLGQGHLVGEGKMLRRLIESDR-----LTSLIFWGPPGSGKTTLARIIANAT 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME- 130 +F S +++ ++ ++ ED R +LF+DEIHR + ++ P +E Sbjct: 74 RSHFIFFSA-IMSGIKEIREVVKEAEDTLKYQGKRTILFVDEIHRFNKSQQDAFLPHVER 132 Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 F + E PS + LSR + L+ PL D + I +E+ Sbjct: 133 GTFTIIGATTENPSFEVIAPLLSRCKV--------LVLQPLSDEDLLKI------LENAL 178 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 +RG L+ T EA +A ++ G R+A L + + +AH IT E A A Sbjct: 179 ADRERGLGELELSATAEALAFMAEQAAGDARVA---LNTLETASRLAHQGEITLESAREA 235 Query: 250 LLR--LAIDKMGFDQLDL 265 + + L DK G + ++ Sbjct: 236 VQKKPLLYDKGGEEHYNV 253 >gi|227496185|ref|ZP_03926491.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces urogenitalis DSM 15434] gi|226834268|gb|EEH66651.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces urogenitalis DSM 15434] Length = 459 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 70/137 (51%), Gaps = 16/137 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAK---ARAEALDHVLFVGPPGLGKTTLAQVVA 75 +RPRTL+E GQ + A S L+ + A + V+ GPPG GKTTLA +VA Sbjct: 26 MRPRTLDELVGQGHLLTAGSPLRRLVCPADDGGVAGAGVSSVILWGPPGTGKTTLAYLVA 85 Query: 76 RELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 R G F S V A D+ A LL + + VLF+DE+HR S ++ L P+ Sbjct: 86 RGSGRRFVELSA-VTAGVKDVRAVVEAARRLLASSGEETVLFVDEVHRFSRSQQDALLPS 144 Query: 129 MEDFQLDLMVG--EGPS 143 +E+ + LM E PS Sbjct: 145 VENRWVTLMAATTENPS 161 >gi|116334669|ref|YP_796196.1| recombination factor protein RarA [Lactobacillus brevis ATCC 367] gi|116100016|gb|ABJ65165.1| Recombination protein MgsA [Lactobacillus brevis ATCC 367] Length = 439 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 18/197 (9%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 ++G L N + S +RP+TL++F GQ K+ E + + + ++F GPP Sbjct: 2 KQGSLFENSQRNTPLASRVRPQTLDQFVGQAHLLGPGKILRELIEN--DQVSSMIFWGPP 59 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-DRD-----VLFIDEIHRL 117 G+GKTTLA+++AR+ F S S V + + ++ E DR+ ++F+DEIHR Sbjct: 60 GVGKTTLAEIIARQTQATFLSFSA-VDSSISKIKKIMHQAEADREIGEQTIVFVDEIHRF 118 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIA-ATTRVG-LLTNP 169 + ++ P +E + +++G S ++N LSR F L A AT + LL N Sbjct: 119 NKAQQDAFLPYVERGSI-ILIGATTENPSFEVNSALLSRCKVFVLKALATADIDQLLRNA 177 Query: 170 LQDRFGIPIRLNFYEIE 186 L + G R+ + E Sbjct: 178 LTNPAGFSGRVTIGDAE 194 >gi|320538018|ref|ZP_08037922.1| recombination factor protein Rar [Treponema phagedenis F0421] gi|320145134|gb|EFW36846.1| recombination factor protein Rar [Treponema phagedenis F0421] Length = 732 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E+ GQ ++ A +A + L V+F GPPG GKTTLA+V+A N Sbjct: 20 MRPRNLDEYIGQEHIVGKGRLLRRAIQA--DRLSSVIFFGPPGTGKTTLARVIANHTKSN 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F S + V+A + ++ E+ R +LF+DE+HR + ++ L P +E+ Sbjct: 78 FLSLNA-VLAGVQQIREAISKAEENKQLYDRRTILFVDEVHRWNRAQQDALLPWVEN 133 >gi|153953934|ref|YP_001394699.1| recombination factor protein RarA [Clostridium kluyveri DSM 555] gi|219854548|ref|YP_002471670.1| hypothetical protein CKR_1205 [Clostridium kluyveri NBRC 12016] gi|146346815|gb|EDK33351.1| Predicted helicase subunit of Holliday junction resolvase [Clostridium kluyveri DSM 555] gi|219568272|dbj|BAH06256.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 437 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLEEF GQ K+ A + + V+F GPPG+GKTTLA+++A N Sbjct: 22 MRPETLEEFIGQEHILGKDKMLYRAI--VTDNISSVIFYGPPGVGKTTLARIIANTTKAN 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F S V + D+ ++ E+ + +LFIDEIHR + ++ + A+E Sbjct: 80 FYELSA-VNSGTADVKKIIKEAENNLKFYSKKTILFIDEIHRFNKAQQDSVLNAVE 134 >gi|317128226|ref|YP_004094508.1| ATPase AAA [Bacillus cellulosilyticus DSM 2522] gi|315473174|gb|ADU29777.1| AAA ATPase central domain protein [Bacillus cellulosilyticus DSM 2522] Length = 442 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 10/119 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RPRT+ E GQ E + A +A + L ++F GPPG GKTTLA+V+A Sbjct: 18 SRMRPRTIHEVIGQKEIVGEGTLLRRAIEA--DQLTPMIFHGPPGTGKTTLAKVIANSTS 75 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 +F + VIA D+ +++ ++R VLFIDEIHR + ++ L P +ED Sbjct: 76 AHFEQLNA-VIAGIKDVREVVSRAKERLKYDQEKTVLFIDEIHRFNKGQQDALLPFVED 133 >gi|32034563|ref|ZP_00134719.1| COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 428 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ +E L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 1 MRPRTLAEYIGQAHLIEEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 56 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A +LTN L D+ Sbjct: 116 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 162 >gi|319778382|ref|YP_004129295.1| ATPase, AAA family [Taylorella equigenitalis MCE9] gi|317108406|gb|ADU91152.1| ATPase, AAA family [Taylorella equigenitalis MCE9] Length = 458 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 86/328 (26%), Positives = 132/328 (40%), Gaps = 64/328 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LRP+TLEE GQ K A K+ R ++ +F GPPG+GKTTLA+++A Sbjct: 33 LRPKTLEEVVGQKHLLDKGKPLYTAFKSGRPHSM---IFWGPPGVGKTTLARLMASGFDA 89 Query: 81 NFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V+ D+ A +L + +LF+DE+HR + ++ P +E Sbjct: 90 KFIAISA-VLGGVKDIRDAVASAKRAQDLGQKTILFVDEVHRFNKAQQDAFLPYVES--- 145 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIE-----DL 188 FT I ATT NP + + R Y +E DL Sbjct: 146 -----------------GLFTFIGATTE-----NPSFEVNSALLSRARVYVLEPLNEIDL 183 Query: 189 KTIVQRGAKLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 K + +R +K D A + I S G R R L + E+ + E+ Sbjct: 184 KQLYERASKFYPNTKIDLQALDLIVHWSDGDAR---RFLNNL----EIVLESAVVEEVGI 236 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFG-GGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 A + +YLT AR F GG V + ISA R + D + + Sbjct: 237 ATKEHIE-----------KYLTQNARRFDKGGEVFYDQISALHKSVRGSDPDAALYWFCR 285 Query: 307 --QGFIQRTPRGRLLMPIAWQHLGIDIP 332 G + + R ++ +AW+ +G+ P Sbjct: 286 MLDGGVDVSYLSRRIVRMAWEDIGLADP 313 >gi|124021978|ref|YP_001016285.1| recombination factor protein RarA/unknown domain fusion protein [Prochlorococcus marinus str. MIT 9303] gi|123962264|gb|ABM77020.1| putative ATPase, AAA family protein [Prochlorococcus marinus str. MIT 9303] Length = 735 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTLEEF GQ + ++ A A + + ++L GPPG+GKTTLA+++A N Sbjct: 24 LRPRTLEEFVGQGSILAEGRLLRRAIAA--DRVGNLLLHGPPGVGKTTLARIIAGHTRAN 81 Query: 82 FRSTSGPVIAKAGDLA----ALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V+A +L A LE R +LFIDE+HR + ++ L P +E+ + Sbjct: 82 FSSLNA-VLAGVKELRQEVDAAKQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTV 140 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E P K +SR L Sbjct: 141 TLIGATTENPYFEVNKALVSRSRLF 165 >gi|33863885|ref|NP_895445.1| recombination factor protein RarA/unknown domain fusion protein [Prochlorococcus marinus str. MIT 9313] gi|33635468|emb|CAE21793.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9313] Length = 735 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTLEEF GQ + ++ A A + + ++L GPPG+GKTTLA+++A N Sbjct: 24 LRPRTLEEFVGQGSILAEGRLLRRAIAA--DRVGNLLLHGPPGVGKTTLARIIAGHTRAN 81 Query: 82 FRSTSGPVIAKAGDLA----ALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V+A +L A LE R +LFIDE+HR + ++ L P +E+ + Sbjct: 82 FSSLNA-VLAGVKELRQEVDAAKQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTV 140 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E P K +SR L Sbjct: 141 TLIGATTENPYFEVNKALVSRSRLF 165 >gi|323142310|ref|ZP_08077142.1| replication-associated recombination protein A [Phascolarctobacterium sp. YIT 12067] gi|322413194|gb|EFY04081.1| replication-associated recombination protein A [Phascolarctobacterium sp. YIT 12067] Length = 428 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 20/149 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L +F GQ V A S L+ IE + L VLF GPPG GKTTLA+V+A Sbjct: 23 MRPERLSDFVGQESAVGAGSPLRRMIER-----DVLQSVLFYGPPGTGKTTLAKVIAHVT 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 G F + + V + +L L+ ++ R ++FIDEIHR + +++L P +E+ Sbjct: 78 GEKFEAINA-VSSGVPELRKLIAKAQEDRRSGRGRTIVFIDEIHRFNKAQQDVLLPYVEN 136 Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLI 157 + +++G +IN LSR ++ Sbjct: 137 GTI-VLIGATTENPFFEINSPLLSRMKVV 164 >gi|315651448|ref|ZP_07904471.1| replication-associated recombination protein A [Eubacterium saburreum DSM 3986] gi|315486268|gb|EFU76627.1| replication-associated recombination protein A [Eubacterium saburreum DSM 3986] Length = 440 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 8/118 (6%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP +L+ GQ K A KA + L ++F GPPG GKTT+A+V+A Sbjct: 20 SRLRPDSLDMVVGQEHILGKDKFLYRAIKA--DKLSSIIFFGPPGCGKTTIAKVIANTTK 77 Query: 80 VNFRSTSGPVIAKAGDLAAL------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 NF+ + K A+ ++ + + +LFIDEIHR + ++ L P +ED Sbjct: 78 SNFKQINATTAGKKEMEEAISEAKISISMYKKKTILFIDEIHRFNKSQQDYLLPFVED 135 >gi|255659708|ref|ZP_05405117.1| replication-associated recombination protein A [Mitsuokella multacida DSM 20544] gi|260848282|gb|EEX68289.1| replication-associated recombination protein A [Mitsuokella multacida DSM 20544] Length = 462 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 20/149 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR +EF GQ EA L+ IE + + ++F GPPG GKTTLAQ++A Sbjct: 46 MRPRNFDEFVGQQEAVGRGHFLRRMIEM-----DQIPSIIFYGPPGTGKTTLAQMIAAMT 100 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + V A DL ++ ++ R ++FIDEIHR + +++L P +ED Sbjct: 101 DSAFEKLNA-VSAGISDLRRIVKEADEARRYYQRRTIVFIDEIHRFNKSQQDVLLPYVED 159 Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLI 157 +L +++G ++N LSR ++ Sbjct: 160 GRL-ILIGATTENPFFEVNHALLSRVRIV 187 >gi|156741065|ref|YP_001431194.1| recombination factor protein RarA [Roseiflexus castenholzii DSM 13941] gi|156232393|gb|ABU57176.1| AAA ATPase central domain protein [Roseiflexus castenholzii DSM 13941] Length = 544 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 11/136 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+EF GQ K+ A +AL ++ GPPG GKTTLA+++A + Sbjct: 27 MRPRALDEFVGQDHIVGEGKLLRRAITN--DALFSIILWGPPGSGKTTLARIIADTTHAH 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V A DL ++ +D R ++FIDEIHR + ++ + P +ED + Sbjct: 85 FEQLSA-VSAGVADLRRVVKEAQDRLGMFQQRTIVFIDEIHRFNKAQQDAILPYVEDGTI 143 Query: 135 DLMVGEGPSARSVKIN 150 +++G S ++N Sbjct: 144 -ILIGATTENPSFEVN 158 >gi|317122073|ref|YP_004102076.1| recombination protein MgsA [Thermaerobacter marianensis DSM 12885] gi|315592053|gb|ADU51349.1| Recombination protein MgsA [Thermaerobacter marianensis DSM 12885] Length = 500 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEEF GQ ++ A +A + L ++ GPPG GKTTLA+++AR + Sbjct: 37 MRPRTLEEFVGQQHLVGPGRLLRRAIEA--DRLGSIILWGPPGSGKTTLARIIARTTRAH 94 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 F + V A DL ++ ++R VLF+DE+HR + ++ L P +E Sbjct: 95 FEPLNA-VTAGVADLRRVVEEAKERRALEGRSTVLFVDEVHRWNRAQQDALLPHLE 149 >gi|167039928|ref|YP_001662913.1| recombination factor protein RarA [Thermoanaerobacter sp. X514] gi|300915273|ref|ZP_07132587.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X561] gi|307724748|ref|YP_003904499.1| AAA ATPase central domain-containing protein [Thermoanaerobacter sp. X513] gi|166854168|gb|ABY92577.1| AAA ATPase, central domain protein [Thermoanaerobacter sp. X514] gi|300888549|gb|EFK83697.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X561] gi|307581809|gb|ADN55208.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X513] Length = 443 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 121/260 (46%), Gaps = 38/260 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL+EF GQ K+ E + + + ++ GPPG+GKTTLA ++A Sbjct: 23 MRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V++ ++ ++ E R V+FIDEIHR + ++ P +E + Sbjct: 81 FVTFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N + + + ++V + PL + EDL +++R Sbjct: 139 ILIGATTENPSFEVN----SALLSRSKV-FVMKPLTE-------------EDLLILLKRA 180 Query: 196 AK-------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IA 246 K + + +TDE +IA+ + G R+A L A+V + I + +A Sbjct: 181 LKDEQNGFGMYKIGITDEQLKKIALFANGDARVALNTLEIAVMGAKVIEGERIVTDDILA 240 Query: 247 DAALLR-LAIDKMGFDQLDL 265 DA + L DK G + +L Sbjct: 241 DAMQKKTLLYDKQGEEHYNL 260 >gi|307720121|ref|YP_003891261.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294] gi|306978214|gb|ADN08249.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294] Length = 391 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 10/116 (8%) Query: 21 LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP + +E GQ + L++ E EAL H F GP G+GKT+LA+V+A+ Sbjct: 6 LLRPSSFDEIIGQEHLSAEDAPLRILCEK-----EALGHSFFYGPAGVGKTSLARVIAKT 60 Query: 78 LGVNFR--STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 + + F + + I + + N + ++FIDE+HRLS +E+L P ME+ Sbjct: 61 MQLPFYEFNATSLKIEQLRKIFEQYKNALQKPLIFIDEVHRLSKNQQEVLLPVMEN 116 >gi|315924180|ref|ZP_07920406.1| replication-associated recombination protein A [Pseudoramibacter alactolyticus ATCC 23263] gi|315622582|gb|EFV02537.1| replication-associated recombination protein A [Pseudoramibacter alactolyticus ATCC 23263] Length = 449 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 79/160 (49%), Gaps = 20/160 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL F GQ + K+ A + L +F GPPG GKTTLA+++A + Sbjct: 24 MRPETLAHFYGQDQIVGKGKLLTRLITA--DKLTSAIFYGPPGTGKTTLAKIIASQTKAA 81 Query: 82 FRS----TSGP-----VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S TSG VIA+A A + +LFIDE+HR + ++ L P++ED Sbjct: 82 FHSLNAVTSGKKEISEVIAEARQNMAFYGR---KTILFIDEVHRFNKAQQDALLPSVED- 137 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 L +++G +IN + LI+ +T NPL D Sbjct: 138 GLIILIGATTENPYFEINAA---LISRSTIFEF--NPLSD 172 >gi|300087469|ref|YP_003757991.1| ATPase central domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527202|gb|ADJ25670.1| AAA ATPase central domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 442 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E+ GQ V + L+ +E+ K L ++ GPPG GKTTLA ++AR Sbjct: 24 MRPRTLDEYVGQEHLVGQGTALRRALESGK-----LPSLILWGPPGSGKTTLANLLARAT 78 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 +F S V A DL ++ R +LFIDEIHR + ++ + P +ED Sbjct: 79 SAHFSPVSA-VSAGVADLRKVIEEARQRRLGEGRGTILFIDEIHRFNKSQQDTILPFVED 137 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 138 GTVVLIGATTENPSFEVISPLLSR 161 >gi|78213812|ref|YP_382591.1| fused recombination factor protein RarA/unknown domain-containing protein [Synechococcus sp. CC9605] gi|78198271|gb|ABB36036.1| ATPase [Synechococcus sp. CC9605] Length = 721 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEEF GQ ++ ++ A KA + + +++ GPPG+GKTTLA+++A + Sbjct: 24 MRPRTLEEFEGQSGILADGRLLRRAIKA--DRVGNLILHGPPGVGKTTLARIIANHTRAH 81 Query: 82 FRSTSGPVIAKAGDLA----ALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V+A +L A LE R +LFIDE+HR + ++ L P +E+ + Sbjct: 82 FSSLNA-VLAGVKNLRTEVDAARQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTV 140 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E P K +SR L Sbjct: 141 TLIGATTENPYFEVNKALVSRSRLF 165 >gi|126207922|ref|YP_001053147.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae L20] gi|126096714|gb|ABN73542.1| hypothetical protein APL_0438 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 446 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ +E L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 19 MRPRTLAEYIGQAHLIEEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 73 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 74 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 133 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A +LTN L D+ Sbjct: 134 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 180 >gi|295110953|emb|CBL27703.1| Recombination protein MgsA [Synergistetes bacterium SGP1] Length = 446 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 95/196 (48%), Gaps = 34/196 (17%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVE----ACSNLKVFIEAAKARAEALDHV 57 M+ L SQ A + +RPRTL+EF GQ C L+ IE DHV Sbjct: 1 MEERSLFEDEASQPLA--ARMRPRTLDEFVGQTHLLGPGCV-LRRLIEE--------DHV 49 Query: 58 ---LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDV 108 +F GPPG+GKTTLA V+A+ F + S V + ++ A++ E+ R + Sbjct: 50 SSMIFWGPPGVGKTTLAGVIAQRTRAAFINFSA-VTSGIKEIRAVMQRAEEGRRLGGRTI 108 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR 162 +F+DEIHR + ++ P +E + +++G S ++N LSR F L A T Sbjct: 109 VFVDEIHRFNKAQQDAFLPFVERGSI-VLIGATTENPSFEVNGALLSRCRVFVLKALTAE 167 Query: 163 --VGLLTNPLQDRFGI 176 GLL+ L D G+ Sbjct: 168 ELAGLLSRALSDPRGL 183 >gi|110004993|emb|CAK99324.1| hypothetical dna helicase probably c-terminal truncated protein [Spiroplasma citri] Length = 106 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 30/119 (25%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP E++ GQ NLK+ I A++ + L H+LF+G G+GKT L Q+ Sbjct: 6 FRPDNFEKYIGQESIKINLKIMIAASQKQQLPLKHMLFIGCSGMGKTCLMQI-------- 57 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 + D++FIDEIH +S V E LYP +ED L+L++G+ Sbjct: 58 ----------------------KTFDLVFIDEIHAISQEVSEALYPVLEDNCLNLILGK 94 >gi|327189703|gb|EGE56850.1| putative ATPase protein [Rhizobium etli CNPAF512] Length = 438 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E TGQ + LK IE+ +L ++F GPPG GKTT+A++++ E Sbjct: 24 LRPKTLAEVTGQDHLTGDDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78 Query: 79 GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + DL A L ++ R +LF+DEIHR + ++ P MED Sbjct: 79 GLAFEQISA-IFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 138 TV-ILVGATTENPSFELN 154 >gi|315185392|gb|EFU19164.1| Recombination protein MgsA [Spirochaeta thermophila DSM 6578] Length = 741 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 119/264 (45%), Gaps = 40/264 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ ++ A +A + L V+F GPPG GKTTLA+V+A Sbjct: 23 MRPRTLDEFVGQEHILGPGRLLRRAIQA--DRLSSVIFYGPPGCGKTTLARVIANHTKSA 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V++ ++ A + R +LF+DE+HR + ++ L P +E+ + Sbjct: 81 FLSLNA-VLSGVQEVRAAIEKARQEMAYHGRRTILFVDEVHRWNKAQQDALLPWVENGTV 139 Query: 135 DLM--VGEGP--SARSVKINLSRFTLIAATTRVGL-------LTNPLQDRFGIPIRLNFY 183 L+ + P S I+ SR + TR L L++P + I L+ Sbjct: 140 ILIGATTQNPYFEVNSALISRSRIFQLKPLTRQHLRTIAERALSDPERGYGKYRIILDED 199 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 +E L T+ A+ A+ E A E + P EV H ITR Sbjct: 200 ALEHLITVADGDARTLLSAI--ELAVETTPDTFPPPE------------GEVIH---ITR 242 Query: 244 EIADAALLRLAI--DKMGFDQLDL 265 E+A+ ++ R A+ DK G D+ Sbjct: 243 EVAEDSIQRKAVLYDKEGDFHYDI 266 >gi|229543042|ref|ZP_04432102.1| AAA ATPase central domain protein [Bacillus coagulans 36D1] gi|229327462|gb|EEN93137.1| AAA ATPase central domain protein [Bacillus coagulans 36D1] Length = 442 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 28/210 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+EF GQ KV E + + L ++F GPPG+GKTTLA+++A + Sbjct: 21 VRPKNLDEFVGQKHLIGKGKVLREMIEH--DRLSSMIFWGPPGVGKTTLAKIIANQTQSE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V + D+ ++ E+R +LF+DEIHR + ++ P +E+ + Sbjct: 79 FINFSA-VTSGIKDIRNVMKEAEERRQLGEKTILFLDEIHRFNKAQQDAFLPYVENGSI- 136 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL--KTIVQ 193 +++G S ++N + + + T+V +L +L EI +L + IV Sbjct: 137 ILIGATTENPSFEVN----SALLSRTKVFVLH-----------KLTSSEIVELLKQAIVN 181 Query: 194 -RGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 G L + + D+ IA S G R A Sbjct: 182 PHGYGLQKIEIEDQTLLAIAEFSDGDARTA 211 >gi|167037129|ref|YP_001664707.1| recombination factor protein RarA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115548|ref|YP_004185707.1| AAA ATPase central domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855963|gb|ABY94371.1| AAA ATPase, central domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928639|gb|ADV79324.1| AAA ATPase central domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 443 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 121/260 (46%), Gaps = 38/260 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL+EF GQ K+ E + + + ++ GPPG+GKTTLA ++A Sbjct: 23 MRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V++ ++ ++ E R V+FIDEIHR + ++ P +E + Sbjct: 81 FITFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N + + + ++V + PL + EDL +++R Sbjct: 139 ILIGATTENPSFEVN----SALLSRSKV-FVMKPLTE-------------EDLLILLKRA 180 Query: 196 AK-------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IA 246 K + + +TDE +IA+ + G R+A L A+V + I + +A Sbjct: 181 LKDEQNGFGMYKIGITDEQLKKIALFANGDARVALNTLEIAVMGAKVIEGERIVTDDILA 240 Query: 247 DAALLR-LAIDKMGFDQLDL 265 DA + L DK G + +L Sbjct: 241 DAMQKKTLLYDKQGEEHYNL 260 >gi|57233987|ref|YP_182021.1| recombination factor protein RarA [Dehalococcoides ethenogenes 195] gi|57224435|gb|AAW39492.1| ATPase, AAA family [Dehalococcoides ethenogenes 195] Length = 457 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 29/215 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L EF GQ + L++ IE K + ++F GPPG GKTTLA ++AR L Sbjct: 27 MRPEGLSEFVGQDHLIGEGRALRLAIEGDK-----IPSLIFWGPPGSGKTTLANIIARRL 81 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 +F + S V A DL ++ + R +LFIDEIHR + ++ + P +ED Sbjct: 82 DAHFSALSA-VSAGVADLRRVVEEARERLKFERRRTILFIDEIHRFNKSQQDAILPYVED 140 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + +++G S ++N + + + +V +L NPL ++ I + L +ED + Sbjct: 141 GTV-VLIGATTENPSFEVN----SALLSRAQVYVL-NPLSEK-EISLILK-RSLEDPSGL 192 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 A+L +EA I+ ++G RIA +L Sbjct: 193 GNYHARL-----LEEAEKHISSFAQGDARIALNIL 222 >gi|293402112|ref|ZP_06646251.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304504|gb|EFE45754.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 447 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 26/192 (13%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M++E L +++ +D S LRP++LE++ GQ KV + + + ++F G Sbjct: 10 MEQESLFYQDL--QDPLASRLRPQSLEDYVGQKHLIGKGKVLWNLIEK--DQVTSMIFWG 65 Query: 62 PPGLGKTTLAQVVARELGVNF----RSTSG-----PVIAKAGDLAALLTNLEDRDVLFID 112 PPG+GKTTLA+++A + F TSG V+ +A D A R +LF+D Sbjct: 66 PPGVGKTTLARIIAHKTQSRFIDFSAVTSGIREIKQVMKEASDARA----FGKRTILFVD 121 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VG 164 EIHR + ++ P +E + +++G S +IN LSR F L T V Sbjct: 122 EIHRFNKAQQDAFLPYVEKGSI-ILIGATTENPSFEINSALLSRCKVFVLKGLETSDLVE 180 Query: 165 LLTNPLQDRFGI 176 LL + L D G Sbjct: 181 LLQHALADEKGF 192 >gi|253582254|ref|ZP_04859477.1| recombination factor protein RarA [Fusobacterium varium ATCC 27725] gi|251835793|gb|EES64331.1| recombination factor protein RarA [Fusobacterium varium ATCC 27725] Length = 409 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 98/215 (45%), Gaps = 41/215 (19%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L +F GQ + L+ IE +++ + +F GPPG GK++L +++++ L Sbjct: 18 LRPTSLNDFIGQEKILGKGGVLRKLIEK-----QSISNSIFFGPPGCGKSSLGEIISKTL 72 Query: 79 GVNFRSTSGPVIAKAGDLAALL----TNLE---DRDVLFIDEIHRLSIIVEEILYPAMED 131 NF T +A DL ++ NLE + +LF+DEIHR + + ++ L E Sbjct: 73 DSNFE-TLNATVASLNDLREIVEKAKKNLEFYGKKTILFLDEIHRFNKLQQDALLSYCES 131 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLK 189 L TLI ATT L N L R I E+++ Sbjct: 132 GIL--------------------TLIGATTENPYYSLNNALLSRVMI-FEFKPLSRENIR 170 Query: 190 TIVQRGAKLTGL--AVTDEAACEIAMRSRGTPRIA 222 I++RGAK GL ++ E I S+G RIA Sbjct: 171 HILERGAKYIGLEEKISKEIIECILDISQGDSRIA 205 >gi|78042989|ref|YP_361014.1| recombination factor protein RarA [Carboxydothermus hydrogenoformans Z-2901] gi|77995104|gb|ABB14003.1| ATPase, AAA family [Carboxydothermus hydrogenoformans Z-2901] Length = 444 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 10/136 (7%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD V++E +RPR+L+EF GQ K+ A ++ L ++F G Sbjct: 1 MDLWDTAKNKVNKEAPLAYRMRPRSLDEFIGQEHILGEGKLLRRAI--LSDRLGSLIFYG 58 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEI 114 PPG GKTTLA+++A F S + V + G++ ++ ++R+ VLFIDEI Sbjct: 59 PPGTGKTTLARIIASTTKSGFESINA-VTSGVGEIREVIKKAKEREKYYGERTVLFIDEI 117 Query: 115 HRLSIIVEEILYPAME 130 HR + ++ L P +E Sbjct: 118 HRFNKAQQDALLPEVE 133 >gi|223984816|ref|ZP_03634926.1| hypothetical protein HOLDEFILI_02224 [Holdemania filiformis DSM 12042] gi|223963225|gb|EEF67627.1| hypothetical protein HOLDEFILI_02224 [Holdemania filiformis DSM 12042] Length = 443 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 16/170 (9%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP+TLEE GQ K+ + + + + ++F GPPG+GKTTLA+++A Sbjct: 20 SRLRPKTLEEVAGQKHLLGEGKILRQLIEQ--DQVSSMIFWGPPGVGKTTLARIIAERTQ 77 Query: 80 VNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 +F TSG I + + A L + ++ +LF+DEIHR + ++ P +E + Sbjct: 78 SHFVDFSAVTSGIKEIKEVMNKAELNRQMGEKTILFVDEIHRFNKAQQDAFLPFVEKGSI 137 Query: 135 DLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176 +++G S +IN LSR F L A T LL LQD G Sbjct: 138 -ILIGATTENPSFEINAALLSRCKVFVLQALATEDLTELLARALQDPRGF 186 >gi|167630476|ref|YP_001680975.1| ATPase, putative [Heliobacterium modesticaldum Ice1] gi|167593216|gb|ABZ84964.1| ATPase, putative [Heliobacterium modesticaldum Ice1] Length = 441 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 49/242 (20%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MD S V ++ ++ +RPR+L+E +GQ +F + L + Sbjct: 1 MDLFSYQSEAVKSKEGPLAFRMRPRSLDEVSGQSHLLKKGSLFRRMIDE--DKLQSFILY 58 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDE 113 GPPG GKTT+A+++A+ F + S V A D+ + E+R +LFIDE Sbjct: 59 GPPGTGKTTIARLIAQTTESPFVTLSA-VTANTSDIKKVAKEAEERLSFNQKRTILFIDE 117 Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD- 172 IHR + +++L P +ED L LI ATT NPL + Sbjct: 118 IHRFNKAQQDLLLPIVEDGTL--------------------ILIGATTE-----NPLYEL 152 Query: 173 RFGIPIRLNFYEIEDLK------------TIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 + RL Y ++ LK T +RG L+G A+T+EA I ++G R Sbjct: 153 NAALLSRLRVYLLQPLKEEELLSLLKRALTDSERGLGLSGNALTEEALALIVQAAKGDAR 212 Query: 221 IA 222 A Sbjct: 213 AA 214 >gi|332799117|ref|YP_004460616.1| AAA ATPase central domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696852|gb|AEE91309.1| AAA ATPase central domain protein [Tepidanaerobacter sp. Re1] Length = 445 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 105/215 (48%), Gaps = 37/215 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL+EF GQ KV + ++ +++ ++ GPPG+GKTTLA+++A + Sbjct: 26 MRPQTLDEFEGQEHLLGEGKVLRKLIES--DSITSMILWGPPGVGKTTLAKIIAEKTHAK 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V++ ++ ++ E+ R +LFIDEIHR + ++ P +E + Sbjct: 84 FENFSA-VLSGIKEIREVMKQAEERRLYGQRTLLFIDEIHRFNKSQQDAFLPFVEKGDI- 141 Query: 136 LMVGEGPSARSVKIN---LSR---FTL--IAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 +++G S ++N LSR FTL + + LL ++D+ Sbjct: 142 ILIGATTENPSFELNSALLSRSKVFTLNPLKPENIILLLKRAIKDK-------------- 187 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 +RG + ++DE ++A+ S G R+A Sbjct: 188 -----ERGLGKMNVDISDETLEKLAVYSNGDARVA 217 >gi|330836757|ref|YP_004411398.1| Recombination protein MgsA [Spirochaeta coccoides DSM 17374] gi|329748660|gb|AEC02016.1| Recombination protein MgsA [Spirochaeta coccoides DSM 17374] Length = 763 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E+ GQ ++ A +A + L V+F GPPG GKTTLA+V+A + Sbjct: 21 MRPRTLDEYIGQEHIVGPGRLLRRAIQA--DQLSSVIFYGPPGTGKTTLARVIANTTKSH 78 Query: 82 FRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F T V++ +L L++ + R +LF+DE+HR + ++ L P +E+ Sbjct: 79 F-VTLNAVLSGVKELRYEIEQARERLSHWQQRTILFVDEVHRWNKSQQDALLPWVEN 134 >gi|39997165|ref|NP_953116.1| recombination factor protein RarA [Geobacter sulfurreducens PCA] gi|39984055|gb|AAR35443.1| ATPase, AAA family [Geobacter sulfurreducens PCA] gi|307634974|gb|ADI84901.2| stalled replication fork rescue ATPase [Geobacter sulfurreducens KN400] Length = 440 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 38/216 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E+ GQ L+ IE+ + L ++F GPPG GKTTLA+V+A Sbjct: 22 MRPRTLDEYVGQEHLLGEGKLLRRLIES-----DTLTSLIFWGPPGSGKTTLARVIANAT 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAME- 130 +F S +++ ++ ++ E+ +LF+DEIHR + ++ P +E Sbjct: 77 KSHFIFFSA-ILSGIKEIREIVKEAEEEKKYRGRNTILFVDEIHRFNKSQQDAFLPYVER 135 Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 F + E PS V LSR + L+ NPL N +I L+ Sbjct: 136 GTFTIIGATTENPSFEVVAPLLSRCKV--------LVLNPLSQE-------NVEQI--LR 178 Query: 190 TIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 + + +RG +GLA D+A +A +S G R+A Sbjct: 179 SALADPERGLGASGLAADDDALAFMAEQSGGDGRVA 214 >gi|269956477|ref|YP_003326266.1| AAA ATPase central domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269305158|gb|ACZ30708.1| AAA ATPase central domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 478 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 15/136 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAK--ARAEALDHVLFVGPPGLGKTTLAQVVAR 76 +RP +LEE GQ + A S L+ +E A AR A V+ GPPG GKTTLA +VA Sbjct: 30 MRPASLEEVAGQDHLLAAGSPLRRLVEPADGTARRAAPGSVILWGPPGTGKTTLAYLVAT 89 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129 G F S V A D+ A++ + R VLFIDE+HR S ++ L P++ Sbjct: 90 VSGRRFVELSA-VTAGVKDVRAVVEDARRRLAGSGEETVLFIDEVHRFSKSQQDALLPSV 148 Query: 130 EDFQLDLMVG--EGPS 143 E+ + L+ E PS Sbjct: 149 ENRWVTLVAATTENPS 164 >gi|227530160|ref|ZP_03960209.1| recombination ATPase [Lactobacillus vaginalis ATCC 49540] gi|227349913|gb|EEJ40204.1| recombination ATPase [Lactobacillus vaginalis ATCC 49540] Length = 441 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 19/176 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR LEEF GQ + N KV + + + + ++ GPPG+GKTTLA+++A++ + Sbjct: 20 IRPRNLEEFMGQQQLIGNGKVLRDLIEH--DQVSSLILWGPPGVGKTTLAEIIAQQTKSH 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V + D+ ++ E +R + FIDEIHR + ++ P +E + Sbjct: 78 FITFSA-VTSSIRDIRKIMEEAEKNREFGERTICFIDEIHRFNKAQQDAFLPFVERGSI- 135 Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIP-IRLNF 182 +++G S +IN LSR F L + T + +L + G P I++++ Sbjct: 136 ILIGATTENPSFEINSALLSRCKVFVLKSLTVNDIIAILKRAINHPDGFPGIKISY 191 >gi|222529053|ref|YP_002572935.1| recombination factor protein RarA [Caldicellulosiruptor bescii DSM 6725] gi|222455900|gb|ACM60162.1| AAA ATPase central domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 441 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 36/222 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE GQ S K K + L ++ GPPG GKTT+A V+A G Sbjct: 22 LRPKRLEEIVGQEHILSPGKPLYNLIKN--DRLTSIILYGPPGTGKTTIAHVIANATGKT 79 Query: 82 FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F++ + IA D+ ++ T + +LFIDEIHR + + ++ L P++E+ + Sbjct: 80 FKTINA-TIAGVNDIKKIIEEAKFEFTQTGKKTILFIDEIHRFNKLQQDALLPSVEEGVI 138 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 +++G ++N + L++ + L PL++ ED+ I++R Sbjct: 139 -ILIGATTENPFYEVNKA---LVSRSLVFELF--PLKE-------------EDILKIIER 179 Query: 195 GA--KLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRRV 229 K GL + D+A IA S G R+A +L V Sbjct: 180 AISDKENGLGELNIQIEDDAKKLIAKLSGGDARVALNILEAV 221 >gi|312622691|ref|YP_004024304.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203158|gb|ADQ46485.1| AAA ATPase central domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 441 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE GQ S K K + L ++ GPPG GKTT+A V+A G Sbjct: 22 LRPKRLEEIVGQEHILSPGKPLYNLIKN--DRLTSIILYGPPGTGKTTIAHVIANATGKT 79 Query: 82 FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F++ + IA D+ ++ T + +LFIDEIHR + + ++ L P++E+ Sbjct: 80 FKTINA-TIAGVNDIKKIIEEAKFEFTQTGKKTILFIDEIHRFNKLQQDALLPSVEE 135 >gi|262196587|ref|YP_003267796.1| ATPase AAA [Haliangium ochraceum DSM 14365] gi|262079934|gb|ACY15903.1| AAA ATPase central domain protein [Haliangium ochraceum DSM 14365] Length = 463 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 26/208 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L+EF GQ K+ A AL ++ GPPG GKTTLA ++A G Sbjct: 21 MRPKSLQEFVGQNHLLGPRKLL--ARLGPGAALPSLILWGPPGTGKTTLAHILATRAGSR 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 + S V A ++ L++ D R VLFIDEIHR S ++ L P +E + Sbjct: 79 LAAISA-VTAGVREMRQLVSEAGDRRDQFGSRTVLFIDEIHRFSKAQQDALLPHVEAGTV 137 Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 L+ E PS LSR ++ R+G L++ + G R + E Sbjct: 138 TLIGATTENPSFHVNAALLSRCRVL----RLGALSD---EELGALARRALSDRE------ 184 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPR 220 RG ++V+DE ++ +S G R Sbjct: 185 -RGLGRAAVSVSDEVLTDLVAQSGGDAR 211 >gi|297544999|ref|YP_003677301.1| AAA ATPase central domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842774|gb|ADH61290.1| AAA ATPase central domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 443 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 120/260 (46%), Gaps = 38/260 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ K+ E + + + ++ GPPG+GKTTLA ++A Sbjct: 23 MRPRTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V++ ++ ++ E R V+FIDEIHR + ++ P +E + Sbjct: 81 FVTFSA-VLSGIKEIKEIMAKAELDAMHGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N + + + ++V + PL + EDL +++R Sbjct: 139 ILIGATTENPSFEVN----SALLSRSKV-FVMKPLTE-------------EDLLILLKRA 180 Query: 196 AK-------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IA 246 K + + +T+E IA+ + G R+A L A+V + I + +A Sbjct: 181 LKDEQNGLGMYKIGITEEQLKRIALFANGDARVALNTLEIAVMGAKVTEGRRIVTDDILA 240 Query: 247 DAALLR-LAIDKMGFDQLDL 265 DA + L DK G + +L Sbjct: 241 DAMQKKTLLYDKQGEEHYNL 260 >gi|255019842|ref|ZP_05291918.1| ATPase, AAA family [Acidithiobacillus caldus ATCC 51756] gi|254970771|gb|EET28257.1| ATPase, AAA family [Acidithiobacillus caldus ATCC 51756] Length = 437 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 73/141 (51%), Gaps = 11/141 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L EF GQ AA R ++L ++F GPPG+GKTTLA ++A E G Sbjct: 13 MRPRSLAEFIGQERLLGPAGPI--AAMLRQKSLHSLVFWGPPGVGKTTLAHLLAAEQGAE 70 Query: 82 FRSTSGPVIAKAGDL---AALLTNLEDR---DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 + S V + +L AA+ T R VLFIDEIHR + ++ L P +E+ L Sbjct: 71 VLTLSA-VDSGVRELRAAAAVATERRGRGESTVLFIDEIHRFNKTQQDALLPHLEEGTLT 129 Query: 136 LM--VGEGPSARSVKINLSRF 154 L+ E PS V LSR Sbjct: 130 LIGATTENPSFALVGALLSRI 150 >gi|148240504|ref|YP_001225891.1| fused recombination factor protein RarA/unknown domain-containing protein [Synechococcus sp. WH 7803] gi|147849043|emb|CAK24594.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Synechococcus sp. WH 7803] Length = 737 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L+EF GQ + ++ A A + + +++ GPPG+GKTTLA+++A + Sbjct: 28 LRPRNLDEFVGQGAILAEGRLLRRAIAA--DRVGNLILHGPPGVGKTTLARIIANHTRAH 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V+A DL A ++ R +LFIDE+HR + ++ L P +E+ L Sbjct: 86 FSSLNA-VLAGVKDLRAEVSEAGQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTL 144 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E P K +SR L Sbjct: 145 TLIGATTENPYFEVNKALVSRSRLF 169 >gi|78222159|ref|YP_383906.1| recombination factor protein RarA [Geobacter metallireducens GS-15] gi|78193414|gb|ABB31181.1| Recombination protein MgsA [Geobacter metallireducens GS-15] Length = 441 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 46/220 (20%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+++ GQ L+ IE+ + L ++F GPPG GKTTLA+++A Sbjct: 23 MRPRTLDDYVGQEHLLGEGKLLRRLIES-----DTLSSLIFWGPPGSGKTTLARIIANAT 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 +F S +++ ++ ++ E+ +LF+DEIHR + ++ P +E Sbjct: 78 KSHFIFFSA-ILSGVKEIREIVKEAENERKYRGSNTILFVDEIHRFNKSQQDAFLPYVEK 136 Query: 132 --FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 F + E PS + LSR + L+ N L D E++ Sbjct: 137 GVFTIIGATTENPSFEVIAPLLSRCKV--------LVLNSLTD-------------EEVT 175 Query: 190 TIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 TI+ +RG LAV+DEA +A +++G RIA Sbjct: 176 TILRRALVDPERGLGNRSLAVSDEALAFMAEQAQGDARIA 215 >gi|295695736|ref|YP_003588974.1| AAA ATPase central domain protein [Bacillus tusciae DSM 2912] gi|295411338|gb|ADG05830.1| AAA ATPase central domain protein [Bacillus tusciae DSM 2912] Length = 472 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 75/147 (51%), Gaps = 14/147 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+E GQ E + A +A + L V+F GPPG+GKTTLA+++A Sbjct: 22 MRPATLDELMGQEEIVGPGTLLRRAIEA--DRLTSVIFYGPPGVGKTTLARLIAGYTRSV 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V A DL ++ + DR LFIDEIHR + ++ L P MED L Sbjct: 80 FVTLSA-VTAGIADLRRVVDDARDRLGMYGQKTTLFIDEIHRFNKAQQDALLPHMED-GL 137 Query: 135 DLMVG---EGPSARSVKINLSRFTLIA 158 +++G E P K LSR + A Sbjct: 138 VILIGATTENPYFEVNKALLSRSLVFA 164 >gi|270308478|ref|YP_003330536.1| ATPase, AAA family [Dehalococcoides sp. VS] gi|270154370|gb|ACZ62208.1| ATPase, AAA family [Dehalococcoides sp. VS] Length = 457 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 22/162 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L EF GQ + L++ IE K + ++F GPPG GKTTLA ++AR L Sbjct: 27 MRPEGLSEFVGQDHLIGEGRALRLAIEGDK-----IPSLIFWGPPGSGKTTLANIIARRL 81 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 +F + S V A DL ++ + R +LFIDEIHR + ++ + P +ED Sbjct: 82 DAHFSALSA-VSAGVADLRRVVEEARERLKFERRRTILFIDEIHRFNKSQQDAILPYVED 140 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173 + +++G S ++N + + + +V +L NPL ++ Sbjct: 141 GTV-VLIGATTENPSFEVN----SALLSRAQVYVL-NPLSEK 176 >gi|190891389|ref|YP_001977931.1| ATPase [Rhizobium etli CIAT 652] gi|190696668|gb|ACE90753.1| putative ATPase protein [Rhizobium etli CIAT 652] Length = 438 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E TGQ LK IE+ +L ++F GPPG GKTT+A++++ E Sbjct: 24 LRPKTLAEVTGQEHLTGEDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78 Query: 79 GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + DL A L ++ R +LF+DEIHR + ++ P MED Sbjct: 79 GLAFEQISA-IFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 138 TV-ILVGATTENPSFELN 154 >gi|313891986|ref|ZP_07825587.1| ATPase, AAA family [Dialister microaerophilus UPII 345-E] gi|313119629|gb|EFR42820.1| ATPase, AAA family [Dialister microaerophilus UPII 345-E] Length = 435 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 77/277 (27%), Positives = 127/277 (45%), Gaps = 49/277 (17%) Query: 11 NVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 ++ Q++ I L +RP LE+ GQ + + + F+ + + + +L GPPG GK Sbjct: 6 DIKQDNTYIPLADRMRPDKLEDIVGQKNSIGS-QSFLYKMICK-DLVPSLLLFGPPGCGK 63 Query: 68 TTLAQVVARELGVN---FRSTSGPVIAKAGDLAAL-----LTNLEDRDVLFIDEIHRLSI 119 TT+A+V+A N F +T + K L A+ L R +LFIDEIHR + Sbjct: 64 TTIAKVIASTTKSNFIKFNATENGI--KEIRLIAIKAEENLKFYNKRTILFIDEIHRFNK 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +++L P ED L L+ G + + +L+R A +R+ L +R Sbjct: 122 SQQDVLLPYTEDGTLTLI---GATTENPYFSLNR----ALLSRIRL------------VR 162 Query: 180 LNFYEIEDLKTIVQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 L I+D+ +I++ +G +++ EIA+ + G RIA LL +V Sbjct: 163 LTELSIDDIISILKNALTNKDKGLGKYNYEYNEKSLKEIAVFANGDTRIALNLLEQVTSL 222 Query: 233 AEVAHAKTIT----REIADAALLRLAIDKMGFDQLDL 265 VA TIT +E+A + DK G + D+ Sbjct: 223 --VAPNGTITENLVKEVAGEQI--FLYDKKGDNHYDV 255 >gi|307245272|ref|ZP_07527363.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254221|ref|ZP_07536065.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258684|ref|ZP_07540419.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853916|gb|EFM86130.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862820|gb|EFM94770.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867341|gb|EFM99194.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 428 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 1 MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 56 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A V +LTN L D+ Sbjct: 116 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIVQVLTNALYDK 162 >gi|257456871|ref|ZP_05622052.1| recombination factor protein RarA [Treponema vincentii ATCC 35580] gi|257445580|gb|EEV20642.1| recombination factor protein RarA [Treponema vincentii ATCC 35580] Length = 751 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L+E+ GQ ++ A +A + L V+F GPPG GKTTLAQV+A N Sbjct: 21 MRPRSLDEYIGQEHIVGKGRLLRRAIQA--DRLSSVIFFGPPGTGKTTLAQVIANHTKSN 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F S + V+A + + + E +LF+DE+HR + ++ L P +E+ Sbjct: 79 FLSLNA-VLAGVQQIRDAIASAEQYKKLYGKPTILFVDEVHRWNRAQQDALLPWVEN 134 >gi|326773290|ref|ZP_08232573.1| ATPase, AAA family [Actinomyces viscosus C505] gi|326636520|gb|EGE37423.1| ATPase, AAA family [Actinomyces viscosus C505] Length = 467 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 74/148 (50%), Gaps = 27/148 (18%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIE---------------AAKARAEALDHVLFVGPP 63 +RPRTL+E GQ S L+ +E AA+ + +L V+ GPP Sbjct: 26 MRPRTLDELQGQAHLLTPGSPLRRLVEPAEAGRGSHAGERGAAARPSSSSLSSVILWGPP 85 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRL 117 G GKTTLA +VAR G F S V A D+ A++T+ R VLFIDE+HR Sbjct: 86 GTGKTTLAYLVARGSGRRFVELSA-VTAGVKDVRAVVTDARRRLAAGEETVLFIDEVHRF 144 Query: 118 SIIVEEILYPAMEDFQLDLMVG--EGPS 143 S ++ L P++E+ + L+ E PS Sbjct: 145 SRSQQDALLPSVENRWVTLIAATTENPS 172 >gi|226355347|ref|YP_002785087.1| recombination factor protein RarA [Deinococcus deserti VCD115] gi|226317337|gb|ACO45333.1| putative DNA-dependent ATPase [Deinococcus deserti VCD115] Length = 451 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 18/170 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRT+ E GQ + ++ L ++ GPPG+GKTTLA++VA E+G + Sbjct: 31 LRPRTVAEVVGQTHLLGPGRPLTRVLQS--GRLGSLILWGPPGVGKTTLARLVAGEVGAH 88 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V A D+ +T E R +LF+DEIHR + ++ L P +E L Sbjct: 89 FIALSA-VSAGVKDVREAVTEAERLRARGTRTILFLDEIHRFNKAQQDALLPHVESGLLT 147 Query: 136 LMVGEGPSARSVKIN-----LSRFTLIAATTR---VGLLTNPLQDRFGIP 177 L +G S ++N +R ++ A T+ GLL L D G+P Sbjct: 148 L-IGATTENPSFEVNPALRSRARTLVLEALTQEDIKGLLERALSDERGLP 196 >gi|254779113|ref|YP_003057218.1| recombination factor protein RarA [Helicobacter pylori B38] gi|254001024|emb|CAX28968.1| Putative ATPase, AAA+ superfamily [Helicobacter pylori B38] Length = 391 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +LL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++A L Sbjct: 5 ALLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K DL L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115 >gi|241952086|ref|XP_002418765.1| AAA family ATPase, putative [Candida dubliniensis CD36] gi|223642104|emb|CAX44070.1| AAA family ATPase, putative [Candida dubliniensis CD36] Length = 490 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 15/136 (11%) Query: 22 LRPRTLEEFTGQVEACS----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP T E++ GQ + ++ FI+ L ++ GPPG+GKTTLA V++ E Sbjct: 26 IRPTTFEQYVGQDHLINPQNGAIRNFIKLG-----YLPSMILSGPPGIGKTTLASVISYE 80 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 G+ F S + DL ++ + VLFIDE+HRL+ I ++ L P +E+ ++ ++ Sbjct: 81 CGLPFLELSATTMT-TSDLKIIMETHNTQLVLFIDELHRLTKIQQDWLLPYIENGKI-IL 138 Query: 138 VGEGPSARSVKINLSR 153 +G A +V+ N +R Sbjct: 139 IG----ATTVQPNSTR 150 >gi|187922127|ref|YP_001893769.1| recombination factor protein RarA [Burkholderia phytofirmans PsJN] gi|187713321|gb|ACD14545.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN] Length = 439 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 66/129 (51%), Gaps = 16/129 (12%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRPRTL+EF GQ + A L++ EA K L + GPPG+GKTTL ++ A Sbjct: 18 LLRPRTLDEFVGQRHLLGAGKPLRLAFEAGK-----LHSFILWGPPGVGKTTLGRLAASA 72 Query: 78 LGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + S V+A D+ A L N VLF+DEIHR + ++ L P +E Sbjct: 73 TDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVE 131 Query: 131 DFQLDLMVG 139 L L+ G Sbjct: 132 SGLLTLVGG 140 >gi|257459680|ref|ZP_05624789.1| ATPase, AAA family [Campylobacter gracilis RM3268] gi|257443105|gb|EEV18239.1| ATPase, AAA family [Campylobacter gracilis RM3268] Length = 395 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 9/114 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP++L++ GQ + + K F+ A ++ H +F G G GKTT+A+V+A EL + Sbjct: 7 FRPKSLDQIAGQGKIVAVFKKFVAAG-----SIPHSIFFGAAGSGKTTMARVIASELNYD 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + K D+ +L++ + ++FIDEIHRLS +E+L ME++ Sbjct: 62 FYELDATSL-KVEDIRKILSSHAGSLIKPLIFIDEIHRLSKTQQEVLLIPMENY 114 >gi|159899639|ref|YP_001545886.1| recombination factor protein RarA [Herpetosiphon aurantiacus ATCC 23779] gi|159892678|gb|ABX05758.1| AAA ATPase central domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 459 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 20/165 (12%) Query: 7 LLSRNVSQ-EDADISL-LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVG 61 L S SQ DA ++ +RPRTL E+ GQ + L+ IE R + + +L+ G Sbjct: 3 LFSYQASQSNDAPLAARMRPRTLAEYEGQTKIVGEGRLLRRLIE----RDQLISLILW-G 57 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114 PPG GKTTLA+++A +F S V A +L ++ + R VLFIDEI Sbjct: 58 PPGTGKTTLARIIAGASSAHFEPLSA-VSAGVAELRKVVKEANERRGMYGKRTVLFIDEI 116 Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 HR + ++ + PA+ED + L+ E PS + LSR +I Sbjct: 117 HRWNKAQQDAVLPAVEDGTVTLIGATTENPSFEINRALLSRCRVI 161 >gi|288918205|ref|ZP_06412560.1| AAA ATPase central domain protein [Frankia sp. EUN1f] gi|288350375|gb|EFC84597.1| AAA ATPase central domain protein [Frankia sp. EUN1f] Length = 476 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 16/126 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR+L+E GQ + S L+ +E + V+ GPPG GKTTLA +V+R Sbjct: 22 LRPRSLDEVVGQRHLLAEGSPLRRLVEGGGTTS-----VVLWGPPGTGKTTLAHIVSRAT 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 FR S V A D+ A++ D R VLFIDE+HR + ++ L P++E Sbjct: 77 RRRFRELSA-VTAGVKDVRAVIDEARDTLFMSGVRTVLFIDEVHRFTRTQQDALLPSVEK 135 Query: 132 FQLDLM 137 + L+ Sbjct: 136 GWVTLV 141 >gi|330446443|ref|ZP_08310095.1| recombination factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490634|dbj|GAA04592.1| recombination factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 446 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 25/221 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+EE+ GQ K A +A L ++ GPPG GKTTLA+V A Sbjct: 19 MRPRTVEEYIGQQHILGEGKPLRRALEA--GHLHSMILWGPPGTGKTTLAEVAAHYANAE 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ A + D R +LF+DE+HR + ++ P +ED + Sbjct: 77 VERVSA-VTSGIKDIRAAIGKARDNKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 135 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + E PS LSR RV L + L+D + + +E T + Sbjct: 136 FIGATTENPSFELNNALLSR-------ARVYKLKS-LEDSEILQV------LEQALTDKE 181 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 RG T L D+ ++A RG R++ L ++ D AE Sbjct: 182 RGVTETNLHFVDDIKEKLAEFVRGDARMSLNYLEQLIDMAE 222 >gi|160885966|ref|ZP_02066969.1| hypothetical protein BACOVA_03971 [Bacteroides ovatus ATCC 8483] gi|156108779|gb|EDO10524.1| hypothetical protein BACOVA_03971 [Bacteroides ovatus ATCC 8483] Length = 423 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 120/264 (45%), Gaps = 50/264 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDEYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E+ Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 + L+ E PS ++ LSR L L E EDL+ Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQLYV---------------------LKSLEKEDLQ 160 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKT-----ITR 243 ++QR +T A+ E E+ + R +G R++ + E V ++T IT Sbjct: 161 ELLQRA--ITTDAILKERKIELK-ETTAMLRFSGGDARKLLNILELVVQSETEETVVITD 217 Query: 244 EIADAALLR--LAIDKMGFDQLDL 265 E+ L + LA DK G D+ Sbjct: 218 EMVTERLQQNPLAYDKDGEMHYDI 241 >gi|165975898|ref|YP_001651491.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875999|gb|ABY69047.1| putative ATPase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 428 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ L+ IEA + + ++F GPPG+GKTTLA+++A Sbjct: 1 MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGIGKTTLAEIIAHHF 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 56 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A +LTN L D+ Sbjct: 116 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 162 >gi|256832588|ref|YP_003161315.1| AAA ATPase central domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686119|gb|ACV09012.1| AAA ATPase central domain protein [Jonesia denitrificans DSM 20603] Length = 464 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 14/135 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEAL-DHVLFVGPPGLGKTTLAQVVARE 77 +RPRT+EE TGQ ++ S L+ ++ + A+ V+ GPPG GKTTLA ++A Sbjct: 27 MRPRTVEEVTGQTHLLQPGSPLRRLLDTSGEYQRAMPGSVMLWGPPGTGKTTLAYLIALN 86 Query: 78 LGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 G F S V A D+ A+ LT+ VLFIDE+HR S ++ L P++E Sbjct: 87 SGRFFVELSA-VTAGVKDVRAVIDDARRRLTSGGQETVLFIDEVHRFSKSQQDALLPSVE 145 Query: 131 DFQLDLMVG--EGPS 143 + + L+ E PS Sbjct: 146 NRWITLVAATTENPS 160 >gi|188586400|ref|YP_001917945.1| Recombination protein MgsA [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351087|gb|ACB85357.1| Recombination protein MgsA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 447 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 114/252 (45%), Gaps = 42/252 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L++F GQ + K+ A +A + L ++ GPPG GKTT+A+++A Sbjct: 24 MRPRSLDDFVGQEQILGKGKLLRRAIEA--DRLTSIVLYGPPGSGKTTIAKIIAENTEKY 81 Query: 82 FRSTSGPVIAKAGDLAALL-TNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + V + DL ++ + E+R ++FIDEIHR + ++ L P +ED Sbjct: 82 FYQLNA-VTSGVKDLREVVEKSKENRSYYSKGTIMFIDEIHRFNKSQQDALLPYVED--- 137 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLKTIV 192 TLI ATT T NPL R I +L I++++T++ Sbjct: 138 -----------------GTITLIGATTENPYFTVNNPLLSRSRI-FKLEQLGIQEIETLL 179 Query: 193 QR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITR 243 +R G + + +A + S G RIA L + + IT+ Sbjct: 180 RRSLQDEEKGLGNYNVEINQDALQHLTDCSNGDIRIALNALELAVLTTVPNENGTRIITK 239 Query: 244 EIADAALLRLAI 255 E+A+ ++ + A+ Sbjct: 240 EVAEESIQKKAV 251 >gi|86357338|ref|YP_469230.1| recombination factor protein RarA [Rhizobium etli CFN 42] gi|86281440|gb|ABC90503.1| putative ATPase associated with chromosome architecture/replication protein [Rhizobium etli CFN 42] Length = 438 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + TGQ LK IE+ +L ++F GPPG GKTT+A++++ E Sbjct: 24 LRPKTLADVTGQEHLTGEDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78 Query: 79 GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + DL AA + ++ R +LF+DEIHR + ++ P MED Sbjct: 79 GLAFEQISA-IFSGVADLKKVFEAARMRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 138 TV-ILVGATTENPSFELN 154 >gi|220908139|ref|YP_002483450.1| recombination factor protein RarA/unknown domain fusion protein [Cyanothece sp. PCC 7425] gi|219864750|gb|ACL45089.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7425] Length = 731 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 9/139 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L+EF GQ ++ A +A + L ++F GPPG GKTTLA+++A Sbjct: 15 MRPRSLDEFIGQDHIIGEGRLLRRAIQA--DQLSSLIFYGPPGTGKTTLARMIANTTQAY 72 Query: 82 FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + + I A + A L R +LF+DE+HR + ++ L P +E+ L L Sbjct: 73 FIAINAVLAGVKEIRAAVETAQTHQQLRQRTILFVDEVHRFNKAQQDALLPWVENGTLIL 132 Query: 137 M--VGEGPSARSVKINLSR 153 + E P K +SR Sbjct: 133 IGATTENPYFEVNKALVSR 151 >gi|223937388|ref|ZP_03629293.1| AAA ATPase central domain protein [bacterium Ellin514] gi|223893939|gb|EEF60395.1| AAA ATPase central domain protein [bacterium Ellin514] Length = 457 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L E+ GQ ++ A +A + + ++F GPPG GKT+LAQ++A + Sbjct: 35 MRPRNLSEYIGQSHILGPGQLLRRAIEA--DRIQSLIFYGPPGTGKTSLAQIIALQTSSK 92 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130 F SG V + D+ +L+ +R +LF+DEIHR + +++L P +E Sbjct: 93 FERLSG-VESNVADMRRVLSAASNRLENTGQPTILFVDEIHRFNKSQQDVLLPDVE 147 >gi|282878511|ref|ZP_06287292.1| recombination factor protein RarA [Prevotella buccalis ATCC 35310] gi|281299302|gb|EFA91690.1| recombination factor protein RarA [Prevotella buccalis ATCC 35310] Length = 432 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E+ GQ V + L+ IEA + + + GPPG+GKTTLAQ++A L Sbjct: 9 MRPRTLDEYVGQQHLVGEGAVLRKMIEAGR-----ISSFILWGPPGVGKTTLAQIIANML 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ ++ +LFIDEIHR S ++ L A+E Sbjct: 64 QTPFYTLSA-VTSGVKDVREVIERAKNSSFFNSASPILFIDEIHRFSKSQQDSLLGAVEK 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|289808090|ref|ZP_06538719.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 65 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 44/65 (67%) Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304 +A AL L +D GFD +D + L + F GGPVG++ ++A + E R+ IED++EPY+ Sbjct: 1 LAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYL 60 Query: 305 IQQGF 309 IQQGF Sbjct: 61 IQQGF 65 >gi|218885443|ref|YP_002434764.1| recombination factor protein RarA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756397|gb|ACL07296.1| AAA ATPase central domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 408 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 11/138 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ F GQ + AA RAE L +L GPPG GK+TLA ++A G Sbjct: 11 IRPSTLDGFVGQTHLTPRI-----AALLRAERLPSLLLFGPPGCGKSTLALLLANAHGTK 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 S P +AG L L +L DVL +DE+HR S ++ P +E ++ ++ Sbjct: 66 VLRLSAP---EAG-LQQLRRSLSGVDVLVLDELHRFSKAQQDFFLPILESGEITMIATTT 121 Query: 140 EGPSARSVKINLSRFTLI 157 E PS + LSR ++ Sbjct: 122 ENPSFSVTRQLLSRLHVM 139 >gi|289432988|ref|YP_003462861.1| ATPase AAA [Dehalococcoides sp. GT] gi|288946708|gb|ADC74405.1| AAA ATPase central domain protein [Dehalococcoides sp. GT] Length = 452 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 17/139 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL EF GQ L++ +E+ K + ++F GPPG GKTTLA ++A L Sbjct: 22 MRPETLAEFVGQSHLIGEGRALRLSLESDK-----IPSLIFWGPPGSGKTTLANIIAHSL 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 +F + S V A DL ++ + R +LFIDEIHR + ++ + P +ED Sbjct: 77 DAHFSALSA-VSAGVADLRRVVEEARERLKLYHRRTILFIDEIHRFNKSQQDAILPYVED 135 Query: 132 FQLDLMVGEGPSARSVKIN 150 + +++G S ++N Sbjct: 136 GTV-VLIGATTENPSFEVN 153 >gi|332975396|gb|EGK12290.1| AAA family ATPase [Desmospora sp. 8437] Length = 410 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 14/146 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ K+ + +A + L +L GPPG GKTTLA+V+A Sbjct: 22 MRPRTLDEIVGQSHILGRGKLLRRSIEA--DQLSSILLYGPPGTGKTTLAKVIANTTQAR 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + VIA ++ + ++ R +LFIDEIHR + ++ L P +ED + Sbjct: 80 FEQLNA-VIAGVAEIRRITQEAKEQLGMYDLRTLLFIDEIHRFNKSQQDALLPFVEDGTI 138 Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157 +++G S ++N LSR L Sbjct: 139 -ILIGATTENPSFEVNSALLSRSRLF 163 >gi|227824827|ref|ZP_03989659.1| recombination factor protein rarA [Acidaminococcus sp. D21] gi|226905326|gb|EEH91244.1| recombination factor protein rarA [Acidaminococcus sp. D21] Length = 440 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 18/169 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+EF GQ KV + + + ++F GPPG+GKTTLA+++A + Sbjct: 19 LRPKTLDEFQGQQHLLGKGKVLRNLIER--DQISSMIFWGPPGVGKTTLAKIIAHTTKAS 76 Query: 82 FRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V + ++ A++ T R ++FIDEIHR + ++ P +E + Sbjct: 77 FITFSA-VTSGIKEIRAVMQRADEQTRFGQRTIVFIDEIHRFNRAQQDAFLPFVEKGSI- 134 Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176 +++G S ++N LSR F L TT + LL L D G+ Sbjct: 135 ILIGATTENPSFEVNGALLSRCKVFVLKELTTEDIMALLKRALTDSRGL 183 >gi|147669758|ref|YP_001214576.1| recombination factor protein RarA [Dehalococcoides sp. BAV1] gi|146270706|gb|ABQ17698.1| AAA ATPase, central domain protein [Dehalococcoides sp. BAV1] Length = 457 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 17/139 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL EF GQ L++ +E+ K + ++F GPPG GKTTLA ++A L Sbjct: 27 MRPETLAEFVGQSHLIGEGRALRLSLESDK-----IPSLIFWGPPGSGKTTLANIIAHSL 81 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 +F + S V A DL ++ + R +LFIDEIHR + ++ + P +ED Sbjct: 82 DAHFSALSA-VSAGVADLRRVVEEARERLKLYHRRTILFIDEIHRFNKSQQDAILPYVED 140 Query: 132 FQLDLMVGEGPSARSVKIN 150 + +++G S ++N Sbjct: 141 GTV-VLIGATTENPSFEVN 158 >gi|254489705|ref|ZP_05102901.1| ATPase, AAA family protein [Methylophaga thiooxidans DMS010] gi|224465114|gb|EEF81367.1| ATPase, AAA family protein [Methylophaga thiooxydans DMS010] Length = 441 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 99/230 (43%), Gaps = 42/230 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGV 80 +RP+TL+++ GQ K +A A H ++F GPPG GKTTLA+++A Sbjct: 19 MRPKTLDQYIGQAHLLGASKPLRQAI---ASGHPHSMIFWGPPGTGKTTLAKLIAGYCDA 75 Query: 81 NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S V+A ++ A + + R +LF+DE+HR + ++ P +ED Sbjct: 76 EFMTISA-VLAGVKEVRAAVARAQQLQQEQGRRTMLFVDEVHRFNKSQQDAFLPYVED-- 132 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTI 191 FT I ATT L N L R + + L E DL+ I Sbjct: 133 ------------------GTFTFIGATTENPSFELNNALLSRARVYV-LKSLETTDLRQI 173 Query: 192 VQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 + R G G+A+ DE ++A + G R LL D A+ Sbjct: 174 IDRAMSNAELGLAERGIAIADELRDQLAQTADGDGRRVLNLLEIAIDLAD 223 >gi|116073846|ref|ZP_01471108.1| putative ATPase, AAA family protein [Synechococcus sp. RS9916] gi|116069151|gb|EAU74903.1| putative ATPase, AAA family protein [Synechococcus sp. RS9916] Length = 736 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 12/149 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR LEEF GQ + ++ A A + + ++L GPPG+GKTTLA+++A + Sbjct: 24 MRPRNLEEFVGQGAILAEGRLLRRAIAA--DRVGNLLLHGPPGVGKTTLARIIANHTRAH 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V+A DL + R +LFIDE+HR + ++ L P +E+ L Sbjct: 82 FSSLNA-VLAGVKDLRTEVDAARQRLDRHGLRTILFIDEVHRFNSAQQDALLPWVENGTL 140 Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATT 161 L+ E P K +SR L T Sbjct: 141 TLIGATTENPYFEVNKALVSRSRLFRLQT 169 >gi|307718299|ref|YP_003873831.1| ATPase, AAA family [Spirochaeta thermophila DSM 6192] gi|306532024|gb|ADN01558.1| ATPase, AAA family [Spirochaeta thermophila DSM 6192] Length = 745 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 118/264 (44%), Gaps = 40/264 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ ++ A +A + L V+F GPPG GKTTLA+V+A Sbjct: 23 MRPRTLDEFVGQEHILGPGRLLRRAIQA--DRLSSVIFYGPPGCGKTTLARVIANHTKSA 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V++ ++ A + R +LF+DE+HR + ++ L P +E+ + Sbjct: 81 FLSLNA-VLSGVQEVRAAIEKARQEMAYHGRRTILFVDEVHRWNKAQQDALLPWVENGTV 139 Query: 135 DLM--VGEGP--SARSVKINLSRFTLIAATTRVGL-------LTNPLQDRFGIPIRLNFY 183 L+ + P S I+ SR + TR L L +P + I ++ Sbjct: 140 ILIGATTQNPYFEVNSALISRSRIFQLTPLTREHLRTIAERALKDPERGYGKYRIIMDDD 199 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 +E L T+ A+ A+ E A E + P EV H ITR Sbjct: 200 ALEHLITVADGDARTLLSAI--ELAVETTPDTFPPPE------------GEVIH---ITR 242 Query: 244 EIADAALLRLAI--DKMGFDQLDL 265 E+A+ ++ R A+ DK G D+ Sbjct: 243 EVAEDSIQRKAVLYDKEGDFHYDI 266 >gi|148554570|ref|YP_001262152.1| recombination factor protein RarA [Sphingomonas wittichii RW1] gi|148499760|gb|ABQ68014.1| Recombination protein MgsA [Sphingomonas wittichii RW1] Length = 444 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 75/158 (47%), Gaps = 21/158 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +E+ GQ AR L ++F GPPG+GKTTLA+++A +G+ Sbjct: 27 LRPTRIEDVVGQEHLTGPDAPLARMVAARR--LSSIIFWGPPGIGKTTLARLLADLVGMR 84 Query: 82 FRSTSGPVIAKAGDLAALLT-----NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD- 135 F + S + AG AA + R VLF+DE HR + + E L P MED + Sbjct: 85 FEAFSATDVTVAGLKAAYAEAKRHLRMGKRTVLFLDESHRAARNITETLLPVMEDGTITA 144 Query: 136 -LMVGEGPSARSVKINLSRFTLIAA-TTRVGLLT-NPL 170 L E PS FTL T+R +LT NPL Sbjct: 145 ILATTEAPS----------FTLPKGITSRARVLTLNPL 172 >gi|73748992|ref|YP_308231.1| recombination factor protein RarA [Dehalococcoides sp. CBDB1] gi|73660708|emb|CAI83315.1| ATPase, AAA family [Dehalococcoides sp. CBDB1] Length = 457 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 17/139 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL EF GQ L++ +E+ K + ++F GPPG GKTTLA ++A L Sbjct: 27 MRPETLAEFVGQSHLIGEGRALRLSLESDK-----IPSLIFWGPPGSGKTTLANIIAHSL 81 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 +F + S V A DL ++ + R +LFIDEIHR + ++ + P +ED Sbjct: 82 DAHFSALSA-VSAGVADLRRVVEEARERLKLYHRRTILFIDEIHRFNKSQQDAILPYVED 140 Query: 132 FQLDLMVGEGPSARSVKIN 150 + +++G S ++N Sbjct: 141 GTV-VLIGATTENPSFEVN 158 >gi|160889857|ref|ZP_02070860.1| hypothetical protein BACUNI_02288 [Bacteroides uniformis ATCC 8492] gi|156860849|gb|EDO54280.1| hypothetical protein BACUNI_02288 [Bacteroides uniformis ATCC 8492] Length = 423 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPRTLDEYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVRDVIERAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|218507489|ref|ZP_03505367.1| recombination factor protein RarA [Rhizobium etli Brasil 5] Length = 250 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E TGQ + LK IE+ +L ++F GPPG GKTT+A+++ E Sbjct: 24 LRPKTLAEVTGQDHLTGDDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLPGEA 78 Query: 79 GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + DL A L ++ R +LF+DEIHR + ++ P MED Sbjct: 79 GLAFEHISA-IFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 138 TV-ILVGATTENPSFELN 154 >gi|302872103|ref|YP_003840739.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302574962|gb|ADL42753.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 441 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 36/222 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE GQ S K K + L ++ GPPG GKTT+A V+A G Sbjct: 22 LRPKRLEEIVGQEHILSPGKPLYNLIKN--DRLTSIILYGPPGTGKTTIAHVIANATGKT 79 Query: 82 FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F++ + IA D+ ++ + + +LFIDEIHR + + ++ L P++E+ + Sbjct: 80 FKTINA-TIAGVNDIKKIIEEAKIEFSQTGKKTILFIDEIHRFNKLQQDALLPSVEE-GI 137 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 +++G ++N + L++ + L PL++ ED+ I++R Sbjct: 138 IILIGATTENPFYEVNKA---LVSRSLVFELF--PLKE-------------EDILKIIER 179 Query: 195 GA--KLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRRV 229 K GL + D+A IA S G R+A +L V Sbjct: 180 AISDKENGLGELNIQIDDDAKKLIAKLSGGDARVALNILEAV 221 >gi|212550412|ref|YP_002308729.1| hypothetical protein CFPG_055 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548650|dbj|BAG83318.1| conserved hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 438 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 22/146 (15%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP++L +F GQ V S L+ IE E + + GPPG+GKTTLA++++ ++ Sbjct: 22 MRPQSLNDFFGQKHLVGEGSILRRMIEG-----EYISSFILWGPPGVGKTTLARIISNQM 76 Query: 79 GVNFRSTS---------GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 + F S G VI KA D+ + R +LFIDEIHR S ++ L A+ Sbjct: 77 NIPFFMLSAVNSGLKDIGKVIDKAKDV-RFFNGV--RPILFIDEIHRFSKSQQDFLLTAV 133 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153 ED + L+ E PS ++ LSR Sbjct: 134 EDRTIILIGATTENPSFEVIRPLLSR 159 >gi|270294113|ref|ZP_06200315.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275580|gb|EFA21440.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 423 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPRTLDEYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVRDVIERAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|319902448|ref|YP_004162176.1| Recombination protein MgsA [Bacteroides helcogenes P 36-108] gi|319417479|gb|ADV44590.1| Recombination protein MgsA [Bacteroides helcogenes P 36-108] Length = 422 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TLEE+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLEEYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 DTPFYTLSA-VTSGVKDVRDVIERAKGNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|227892533|ref|ZP_04010338.1| recombination ATPase [Lactobacillus ultunensis DSM 16047] gi|227865654|gb|EEJ73075.1| recombination ATPase [Lactobacillus ultunensis DSM 16047] Length = 441 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 21/192 (10%) Query: 2 MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M E L S ++ +D + L +RP++L+EF GQ + K+ E + + + ++ Sbjct: 1 MKEESLFS--LANQDENTPLADRVRPQSLDEFVGQKDLIGKGKILRELIEK--DKVPSLI 56 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112 GPPG GKTTLA+++A+ +F + S V + D+ ++ E ++ ++FID Sbjct: 57 LWGPPGTGKTTLAEIIAKHTKAHFITFSA-VTSSIKDIRKIMEEAESNRQFGEKTIVFID 115 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTR--VGL 165 EIHR + ++ P +E + L+ E PS LSR F L + +T V L Sbjct: 116 EIHRFNKAQQDAFLPFVEQGSITLIGATTENPSFEVNSALLSRAKVFVLHSLSTEDIVLL 175 Query: 166 LTNPLQDRFGIP 177 L +++ G P Sbjct: 176 LKRAIKNPNGFP 187 >gi|161760546|ref|NP_907435.2| recombination factor protein RarA [Wolinella succinogenes DSM 1740] Length = 396 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 12/119 (10%) Query: 21 LLRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP + E+ GQ A + L+ IE +L H F GPPG GKT+ A+++A+ Sbjct: 7 LLRPTSFEDLIGQEHLFGANAPLRRLIEHG-----SLPHAFFYGPPGTGKTSAAKIIAKR 61 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 L F + K +L + L ++ + +LFIDE+HRLS +E+L P ME+ + Sbjct: 62 LDRPFALFNATTF-KIEELRSYLKEYKNALLKPLLFIDEVHRLSKNQQEVLLPLMENHE 119 >gi|253700393|ref|YP_003021582.1| recombination factor protein RarA [Geobacter sp. M21] gi|251775243|gb|ACT17824.1| AAA ATPase central domain protein [Geobacter sp. M21] Length = 434 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 118/265 (44%), Gaps = 51/265 (19%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR++ ++ GQ V L+ IE+ + L ++F GPPG GKTTLA+++A Sbjct: 19 MRPRSMAQYLGQGHLVGEGKMLRRLIESDR-----LTSLIFWGPPGSGKTTLARIIANAT 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME- 130 +F S +++ ++ ++ ED R +LF+DEIHR + ++ P +E Sbjct: 74 SSHFIFFSA-IMSGIKEIREVVKEAEDTLKYQGKRTILFVDEIHRFNKSQQDAFLPHVER 132 Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 F + E PS + LSR + L+ PL D EDL Sbjct: 133 GTFTIIGATTENPSFEVIAPLLSRCKV--------LVLQPLSD-------------EDLL 171 Query: 190 TIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 I+ +RG L T EA +A ++ G R+A L + + +AH IT Sbjct: 172 KILEIALADRERGLGDLELGATAEALAFMAEQAAGDARVA---LNTLETASRLAHHGEIT 228 Query: 243 REIADAALLR--LAIDKMGFDQLDL 265 E A A+ + L DK G + ++ Sbjct: 229 LESAREAVQKKPLLYDKGGEEHYNV 253 >gi|108803881|ref|YP_643818.1| recombination factor protein RarA [Rubrobacter xylanophilus DSM 9941] gi|108765124|gb|ABG04006.1| Recombination protein MgsA [Rubrobacter xylanophilus DSM 9941] Length = 429 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 121/277 (43%), Gaps = 52/277 (18%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLF 59 + D+ G S N++ LRPR+L+E GQ EAA + R + V+ Sbjct: 3 LFDQSG--SENLAARAPLAERLRPRSLDEVVGQPHLAGEGGPLREAAERGR---VGSVIL 57 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112 GPPG GKTTLA+V+A + F S V + DL A L +R +LF+D Sbjct: 58 WGPPGTGKTTLARVLAASVEEEFVPLSA-VTSGVRDLRAALDGARERLKYEGRGTLLFVD 116 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPL 170 E+HR + ++ L PA+E+ +D I ATT +T PL Sbjct: 117 EVHRFNKAQQDALLPALEEGLVD--------------------FIGATTENPSFEVTAPL 156 Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230 R + +RL DL+ +++RG G+ ++ EA + R+AG RR+ Sbjct: 157 LSRSRV-LRLRPLSKGDLEALLERGLSELGVGISGEARDYLL-------RLAGGDARRML 208 Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267 + EV A + RE+ A + R Q LRY Sbjct: 209 NALEV--AASGRREVGVAEIER------ALGQRALRY 237 >gi|283768972|ref|ZP_06341878.1| recombination factor protein RarA [Bulleidia extructa W1219] gi|283104329|gb|EFC05706.1| recombination factor protein RarA [Bulleidia extructa W1219] Length = 441 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 16/133 (12%) Query: 11 NVSQEDAD-----ISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 N+ QE++D ++L +RP+TL+E GQ + K+ A +A+ L ++ GPPG Sbjct: 2 NLFQEESDELKEPLALRMRPKTLDEVVGQTHILAKDKLLYRAI--QADRLSSLILTGPPG 59 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117 GKT+LA VVA+ +F + V K DL ++ + ++ +LFIDEIHR Sbjct: 60 TGKTSLAMVVAQSTKSHFEQVNATVAGKK-DLEKIVEDASVRKERYGEKTILFIDEIHRF 118 Query: 118 SIIVEEILYPAME 130 + ++ L P +E Sbjct: 119 NKGQQDYLLPFVE 131 >gi|268319502|ref|YP_003293158.1| recombination factor protein RarA [Lactobacillus johnsonii FI9785] gi|262397877|emb|CAX66891.1| recombination factor protein RarA [Lactobacillus johnsonii FI9785] Length = 420 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ L F GQ + + + K +L GPPG GKT+LAQ++ARE Sbjct: 10 LIRPKDLSHFVGQKDLIKEGQPLYQIIKNHVPI--SLLLWGPPGTGKTSLAQIIAREYDY 67 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + + KA + + T VL IDEIHR++ +++ L P +E+ Q+ L++G Sbjct: 68 PLATFNASTDNKAKLMQIINTYPYQSFVLLIDEIHRMTTTLQDYLLPYLENGQI-LLIG 125 >gi|218460214|ref|ZP_03500305.1| recombination factor protein RarA [Rhizobium etli Kim 5] Length = 255 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + TGQ LK IE+ +L ++F GPPG GKTT+A++++ E Sbjct: 24 LRPKTLADVTGQDHLTGEDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78 Query: 79 GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + DL AA + ++ R +LF+DEIHR + ++ P MED Sbjct: 79 GLAFEQISA-IFSGVADLKKVFEAARMRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 138 TV-ILVGATTENPSFELN 154 >gi|213622415|ref|ZP_03375198.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 54 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/51 (64%), Positives = 39/51 (76%) Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H I+ EIA AL Sbjct: 2 GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQAL 52 >gi|260903841|ref|ZP_05912163.1| recombination factor protein RarA [Brevibacterium linens BL2] Length = 499 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 11/120 (9%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT+ E GQ S L +EA+ V+ GPPG+GKTTLA V++ Sbjct: 40 MRPRTIAEVVGQDHLTFPGSPLVQLVEASGGDRAGASSVILWGPPGVGKTTLAHVISHAP 99 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-EDRD------VLFIDEIHRLSIIVEEILYPAMED 131 G F S + A D+ ++ N +RD VLF+DEIHR S ++ L PA+E+ Sbjct: 100 GRTFVELSA-ITAGVKDVRQVIENARRERDMYQRTTVLFLDEIHRFSKAQQDALLPAVEN 158 >gi|116493737|ref|YP_805471.1| recombination factor protein RarA [Lactobacillus casei ATCC 334] gi|239630989|ref|ZP_04674020.1| recombination factor protein RarA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065310|ref|YP_003787333.1| helicase subunit of the Holliday junction resolvase-like ATPase [Lactobacillus casei str. Zhang] gi|116103887|gb|ABJ69029.1| Recombination protein MgsA [Lactobacillus casei ATCC 334] gi|239527272|gb|EEQ66273.1| recombination factor protein RarA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437717|gb|ADK17483.1| Helicase subunit of the Holliday junction resolvase related ATPase [Lactobacillus casei str. Zhang] Length = 448 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 114/264 (43%), Gaps = 43/264 (16%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+TL+EF GQ KV + + + ++F GPPG+GKTTLA+++AR Sbjct: 16 SRMRPQTLDEFVGQTHLLGKDKVL--SNLIEHDEISSMIFWGPPGVGKTTLARIIARRTK 73 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S V + ++ ++ E + ++F+DEIHR + ++ P +E Sbjct: 74 AQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGS 132 Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185 + +++G S ++N LSR F L T+ V LL L+D Sbjct: 133 I-ILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD------------- 178 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 RG L + + + +IA + G RIA L AE IT Sbjct: 179 -------PRGYGLQKVKIGKKLLAQIADFANGDARIALNTLEMAVTNAETK-GGVITVTQ 230 Query: 246 ADAALL----RLAIDKMGFDQLDL 265 AD A L L DK G + +L Sbjct: 231 ADVAQLLTKKALLYDKNGEEHYNL 254 >gi|259416571|ref|ZP_05740491.1| recombination factor protein RarA [Silicibacter sp. TrichCH4B] gi|259348010|gb|EEW59787.1| recombination factor protein RarA [Silicibacter sp. TrichCH4B] Length = 443 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL E GQ + A + L V + + +L ++F GPPG+GKTT+A+++A+E Sbjct: 30 LRPRTLAEVIGQEQVLGAEAPLGVMLASG-----SLSSLIFWGPPGVGKTTIARLLAQET 84 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 85 DLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 144 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 145 I-LLVGATTENPSFELN 160 >gi|153806769|ref|ZP_01959437.1| hypothetical protein BACCAC_01041 [Bacteroides caccae ATCC 43185] gi|149131446|gb|EDM22652.1| hypothetical protein BACCAC_01041 [Bacteroides caccae ATCC 43185] Length = 423 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDEYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E+ Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|300361690|ref|ZP_07057867.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri JV-V03] gi|300354309|gb|EFJ70180.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri JV-V03] Length = 426 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 87/357 (24%), Positives = 132/357 (36%), Gaps = 73/357 (20%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ L +F GQ + + + K +L GPPG GKT+LAQ++ARE Sbjct: 10 LIRPKDLSQFVGQKDLIEKERPLYQIIKKHVPI--SLLLWGPPGTGKTSLAQIIAREFDY 67 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 + + + KA + T VL IDEIHR++ +++ L P +E+ Sbjct: 68 PLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIHRMTTTLQDFLLPYLEN--------- 118 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF-GIPIRLNFYEI-----EDLKTIVQR 194 R LI ATT NP+ + R +E ED++ ++ R Sbjct: 119 -----------GRILLIGATTE-----NPIMSIVPAVRSRCQIFEFKTLSDEDIEQVLVR 162 Query: 195 GAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLL------------RRVRDFAEVAHA 238 K + +A IA+ + G R+A LL VR F + H Sbjct: 163 ALKEVFHFKDENIDRKAVKIIAISADGDLRVALNLLETIHAVNEDLSAEEVRQFVKGQHF 222 Query: 239 KTITREIADAALLRLAIDKMGFDQLD--LRYLTMIARNFGGGPV------GIETISAGLS 290 + L D M D L YL ++ +N G P I GL+ Sbjct: 223 AYDRKATKHYDYLAAYSDSMAGSDTDAALYYLAVLLKN-GDLPSVVRRLREIPYTYIGLA 281 Query: 291 EPRDAIEDLIE--------------PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333 P A + +I P M + +P+ + I WQ L D H Sbjct: 282 NPEQATQIVIAANQAEKIGMPKAKYPLMFATMLMCLSPKSGVFDEI-WQKLDEDTDH 337 >gi|209548968|ref|YP_002280885.1| recombination factor protein RarA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534724|gb|ACI54659.1| AAA ATPase central domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 438 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + TGQ LK IE+ ++L ++F GPPG GKTT+A++++ E Sbjct: 24 LRPKTLADVTGQEHLTGEDGVLKRMIES-----DSLGSMIFWGPPGTGKTTVARLLSGEA 78 Query: 79 GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + DL A L ++ R +LF+DEIHR + ++ P MED Sbjct: 79 GLAFEQISA-IFSGVADLKKMFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 138 TV-ILVGATTENPSFELN 154 >gi|183220685|ref|YP_001838681.1| recombination factor protein RarA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910786|ref|YP_001962341.1| recombination factor protein RarA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775462|gb|ABZ93763.1| helicase-like ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779107|gb|ABZ97405.1| Putative ATPase involved in DNA replication [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 419 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 27/152 (17%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+T EF GQ + + L+ + +LF GPPG GKTTLA ++A + Sbjct: 16 LVRPKTWSEFVGQTKVVAALRSITKPTS--------ILFYGPPGTGKTTLAHLLAESWKL 67 Query: 81 NFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 R TSG V+ + L + VLF+DEIHR S ++ L A+E+ Sbjct: 68 EKRYLSCVTSGVKEVREVLEEGKRLGTI--------VLFLDEIHRFSSSQQDALLSAVEE 119 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLIAATT 161 ++ L+ E PS R K LSR + TT Sbjct: 120 GEIILIAATTENPSFRVNKALLSRMLVYRLTT 151 >gi|329121015|ref|ZP_08249646.1| replication-associated recombination protein A [Dialister micraerophilus DSM 19965] gi|327471177|gb|EGF16631.1| replication-associated recombination protein A [Dialister micraerophilus DSM 19965] Length = 435 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 127/277 (45%), Gaps = 49/277 (17%) Query: 11 NVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 ++ Q++ I L +RP LE+ GQ + + + F+ + + + +L GPPG GK Sbjct: 6 DIKQDNTYIPLADRMRPDKLEDIVGQKNSIGS-QSFLYKMICK-DLVPSLLLFGPPGCGK 63 Query: 68 TTLAQVVARELGVN---FRSTSGPVIAKAGDLAAL-----LTNLEDRDVLFIDEIHRLSI 119 TT+A+V+A N F +T + K L A+ L + +LFIDEIHR + Sbjct: 64 TTIAKVIASTTKSNFIKFNATENGI--KEIRLIAIKAEENLKFYNKKTILFIDEIHRFNK 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +++L P ED L L+ G + + +L+R A +R+ L +R Sbjct: 122 SQQDVLLPYTEDGTLTLI---GATTENPYFSLNR----ALLSRIRL------------VR 162 Query: 180 LNFYEIEDLKTIVQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 L I+D+ +I++ +G +++ EIA+ + G RIA LL +V Sbjct: 163 LTELSIDDIISILKNALTNKDKGLGKYNYEYNEKSLKEIAVFANGDTRIALNLLEQVTSL 222 Query: 233 AEVAHAKTIT----REIADAALLRLAIDKMGFDQLDL 265 VA TIT +E+A + DK G + D+ Sbjct: 223 --VAPNGTITENLVKEVAGEQI--FLYDKKGDNHYDV 255 >gi|317124709|ref|YP_004098821.1| recombination protein MgsA [Intrasporangium calvum DSM 43043] gi|315588797|gb|ADU48094.1| Recombination protein MgsA [Intrasporangium calvum DSM 43043] Length = 466 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 14/148 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ + S L+ IE + A L +++ GPPG GKTTLA +VA Sbjct: 31 MRPRSLDEVRGQGSVLRPGSPLRRLIEGSGGAAGPLSAIIW-GPPGTGKTTLAHLVATAA 89 Query: 79 GVNFRSTSGPVIAKAGDLAALL-TNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131 F S V A D+ +++ + + +RD VLF+DEIHR + ++ L P +E+ Sbjct: 90 DRRFVELSA-VTAGVKDVRSVMESAVRERDLYGRQTVLFLDEIHRFTKAQQDALLPGVEN 148 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E PS + LSR LI Sbjct: 149 RTVILVAATTENPSFSVIAPLLSRSVLI 176 >gi|315918924|ref|ZP_07915164.1| recombination factor protein RarA [Bacteroides sp. D2] gi|313692799|gb|EFS29634.1| recombination factor protein RarA [Bacteroides sp. D2] Length = 322 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 120/264 (45%), Gaps = 50/264 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDEYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E+ Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 + L+ E PS ++ LSR L L E EDL+ Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQLYV---------------------LKSLEKEDLQ 160 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKT-----ITR 243 ++QR +T A+ E E+ + R +G R++ + E V ++T IT Sbjct: 161 ELLQRA--ITTDAILKERKIELK-ETTAMLRFSGGDARKLLNILELVVQSETEETVVITD 217 Query: 244 EIADAALLR--LAIDKMGFDQLDL 265 E+ L + LA DK G D+ Sbjct: 218 EMVTERLQQNPLAYDKDGEMHYDI 241 >gi|220904438|ref|YP_002479750.1| recombination factor protein RarA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868737|gb|ACL49072.1| AAA ATPase central domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 407 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 99/230 (43%), Gaps = 36/230 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L F GQ S L+ ++A + L +LF GPPG GK+TLA ++A+ G Sbjct: 11 MRPDDLALFLGQTHLGSRLRSLMQAKR-----LPSLLFFGPPGCGKSTLALLLAKGTGKT 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 F S P +AG L L +L ++L +DE+HR S ++ P +E L L+ Sbjct: 66 FLRLSAP---EAG-LQHLRRSLSGIEILVLDELHRFSKAQQDFFLPLVESGDLTLLATTT 121 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 E PS + LSR + +RL +L + +RGA Sbjct: 122 ENPSFSVTRQLLSRLHV---------------------LRLRPLGRTELVELARRGAMDL 160 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRV----RDFAEVAHAKTITREI 245 + + DE A +A + G R L+ V D E+ H K E+ Sbjct: 161 QVEMPDELAELLAGVAHGDARTLLNLVEYVAALPSDLREIEHIKAALPEV 210 >gi|312134908|ref|YP_004002246.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774959|gb|ADQ04446.1| AAA ATPase central domain protein [Caldicellulosiruptor owensensis OL] Length = 441 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE GQ S K K + L ++ GPPG GKTT+A V+A G Sbjct: 22 LRPKRLEEIVGQEHILSPGKPLYNLIKN--DKLTSIILYGPPGTGKTTIAHVIANATGKT 79 Query: 82 FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F++ + IA D+ ++ + + +LFIDEIHR + + ++ L P++E+ Sbjct: 80 FKTINA-TIAGVNDIKRIIEEAKIEFSQTGKKTILFIDEIHRFNKLQQDALLPSVEE 135 >gi|325068849|ref|ZP_08127522.1| AAA ATPase central domain protein [Actinomyces oris K20] Length = 464 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 73/148 (49%), Gaps = 27/148 (18%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEA---------------LDHVLFVGPP 63 +RPRTL+E GQ S L+ +E A+A + L V+ GPP Sbjct: 26 MRPRTLDELQGQTHLLTPGSPLRRLVEPAEASGGSHAGERGAAARPSSSSLSSVILWGPP 85 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRL 117 G GKTTLA +VAR G F S V A D+ A++++ R VLFIDE+HR Sbjct: 86 GTGKTTLAYLVARGSGRRFVELSA-VTAGVKDVRAVVSDARRRLAAGEETVLFIDEVHRF 144 Query: 118 SIIVEEILYPAMEDFQLDLMVG--EGPS 143 S ++ L P++E+ + L+ E PS Sbjct: 145 SRSQQDALLPSVENRWVTLIAATTENPS 172 >gi|91200409|emb|CAJ73456.1| similar to ATPase related to the helicase subunit of the Holliday junction resolvase [Candidatus Kuenenia stuttgartiensis] Length = 478 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 23/169 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L EF GQ L+ FIE + L ++F GPPG+GKTTLA ++A + Sbjct: 55 MRPRNLSEFVGQEHLVGEGKILRSFIENKE-----LVSLIFWGPPGVGKTTLALIIANAM 109 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 +F + S V++ ++ A++ ++ R VLF+DEIHR + ++ +ED Sbjct: 110 NAHFITFSA-VLSGVKEIRAVIEEAKEQLKFNGKRTVLFVDEIHRFNKAQQDSFLHHVED 168 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIA-----ATTRVGLLTNPLQDR 173 + L+ E PS LSR ++ + +L N L DR Sbjct: 169 GTITLIGATTENPSFEVNSPLLSRCKVLVLEPLRKSHITAILLNALSDR 217 >gi|95930182|ref|ZP_01312921.1| AAA ATPase, central region [Desulfuromonas acetoxidans DSM 684] gi|95133876|gb|EAT15536.1| AAA ATPase, central region [Desulfuromonas acetoxidans DSM 684] Length = 439 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 44/234 (18%) Query: 7 LLSRNVSQEDADIS-LLRPRTLEEFTGQ----VEACSNLKVFIEAAKARAEALDHVLFVG 61 L S +S + ++ +RP+ L+E GQ + C L+ IEA + L ++F G Sbjct: 3 LFSSTISDDQTPLAERMRPQHLDEVVGQQHLLADGCP-LRQIIEA-----DQLSSLIFWG 56 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114 PPG GKTTLAQV+A+ F S ++ D+ +++ ++ R +LF+DEI Sbjct: 57 PPGTGKTTLAQVIAQSTRSRFVFFSA-IMNGVKDIRHIVSRAKEDRSMYGTRTILFVDEI 115 Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174 HR + ++ PA+E L +++G S ++N + + + RV +L PLQ Sbjct: 116 HRFNKSQQDAFLPALEKGDL-ILIGATTENPSFEVNAA----LLSRARVFVL-KPLQH-- 167 Query: 175 GIPIRLNFYEIEDLKTIVQRG-AKLTGLA-----VTDEAACEIAMRSRGTPRIA 222 +D+ ++QR + GLA V+ EA +A ++G R+A Sbjct: 168 -----------DDIVLLLQRALSDPRGLADQKPDVSQEALDHLAQLAQGDARVA 210 >gi|90579109|ref|ZP_01234919.1| putative ATPase protein [Vibrio angustum S14] gi|90439942|gb|EAS65123.1| putative ATPase protein [Vibrio angustum S14] Length = 446 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 96/221 (43%), Gaps = 25/221 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+EE+ GQ K A + L ++ GPPG GKTTLA+V A Sbjct: 19 MRPRTVEEYIGQQHILGQGKPLRRALEG--GQLHSMILWGPPGTGKTTLAEVAAHYANAE 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ A + D R +LF+DE+HR + ++ P +ED + Sbjct: 77 VERVSA-VTSGIKDIRAAIDKARDNKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 135 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + E PS LSR RV L + L+D + + IE T + Sbjct: 136 FIGATTENPSFELNNALLSR-------ARVYKLKS-LEDDEILQV------IEQALTDKE 181 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 RG T + D+ ++A RG R++ L ++ D AE Sbjct: 182 RGVSETNIHFADDIKEKLAEFVRGDARMSLNYLEQLIDMAE 222 >gi|169832181|ref|YP_001718163.1| recombination factor protein RarA [Candidatus Desulforudis audaxviator MP104C] gi|169639025|gb|ACA60531.1| AAA ATPase, central domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 435 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+EFTGQ K+ A ++ + L ++ GPPG GKTTLA +++R N Sbjct: 28 MRPRELDEFTGQEHIVGPGKLLRRAIES--DLLGSIILYGPPGSGKTTLAHIISRTTKSN 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 FR+ S V + +L ++ D + +LF+DE H + +++L P +E Sbjct: 86 FRTVSA-VSSGVKELRQVIEAAADSLKFHGRKTILFVDECHAFNKSQQDVLLPGIE 140 >gi|268678708|ref|YP_003303139.1| ATPase AAA [Sulfurospirillum deleyianum DSM 6946] gi|268616739|gb|ACZ11104.1| AAA ATPase central domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 396 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 6/116 (5%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 RP+ +EE +GQ F + K+ + + H LF GP G+GKTTLA++VA L + Sbjct: 8 FFRPKVIEELSGQKHLSGENSPFRKLLKSGS--MSHALFFGPAGVGKTTLARIVANTLQL 65 Query: 81 NFRSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F I K ++ +L+ + ++FIDEIHRLS +E+L ME+ + Sbjct: 66 PFYELDATSI-KVEEIRKILSQHRGALQKPLIFIDEIHRLSKTQQEVLLLPMENHE 120 >gi|229918427|ref|YP_002887073.1| ATPase AAA [Exiguobacterium sp. AT1b] gi|229469856|gb|ACQ71628.1| AAA ATPase central domain protein [Exiguobacterium sp. AT1b] Length = 438 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 14/146 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL++ GQ K+ A +A + L ++ GPPG GKTTLA+V++ Sbjct: 17 MRPETLDDVIGQRHIIGEGKLLRRAIEA--DRLGTIILYGPPGTGKTTLARVISNYTKAT 74 Query: 82 FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + V AK +L ++ E +R +LF+DEIHR + + ++ L PA+E +L Sbjct: 75 FVQLNA-VTAKLDELRNVIREAESRYDYEDERTILFLDEIHRFNKLQQDALLPALESGKL 133 Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157 +++G S ++N LSR T+ Sbjct: 134 -VLIGATTENPSFEVNAALLSRATVF 158 >gi|297616541|ref|YP_003701700.1| ATPase AAA [Syntrophothermus lipocalidus DSM 12680] gi|297144378|gb|ADI01135.1| AAA ATPase central domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 429 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 108/251 (43%), Gaps = 53/251 (21%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHV 57 MD S+N Q + ++ +RP+ L+E GQ V + L+ IE + L + Sbjct: 1 MDLFSYQSQNQPQAWSPLAFRMRPKDLDEIEGQAHLVGPGAPLRRMIER-----DQLHSM 55 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFR------STSGPVIAKAGDLAALLTNLEDRDVLFI 111 + GPPG GKTTL ++A++ +F +T+ + AG+ L R +LF+ Sbjct: 56 ILYGPPGTGKTTLGNIIAKKTRSHFEYLKAVSTTTADIRQLAGEAGQRLKFYGQRTILFL 115 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171 DEIHR + ++ L P MV EG F LI ATT NPL Sbjct: 116 DEIHRFNKAQQDALLP---------MVEEG-----------IFILIGATTE-----NPLY 150 Query: 172 D-RFGIPIRLNFYEIEDLKTIV------------QRGAKLTGLAVTDEAACEIAMRSRGT 218 + + R + Y +E L +RG G+ +T+EA + + ++G Sbjct: 151 EINSALLSRTHIYVLEPLDEQAIERILLRALNDKERGLGKYGIEITEEALKSVVIAAKGD 210 Query: 219 PRIAGRLLRRV 229 R A L+ + Sbjct: 211 ARTALNLVENL 221 >gi|317476021|ref|ZP_07935274.1| ATPase [Bacteroides eggerthii 1_2_48FAA] gi|316907816|gb|EFV29517.1| ATPase [Bacteroides eggerthii 1_2_48FAA] Length = 372 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDEYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|89053112|ref|YP_508563.1| recombination factor protein RarA [Jannaschia sp. CCS1] gi|88862661|gb|ABD53538.1| Recombination protein MgsA [Jannaschia sp. CCS1] Length = 436 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL+ GQ + + +L+V +++ AL ++F GPPG+GKTT+A+++A E Sbjct: 25 LRPATLDAVIGQGHLLGSEGSLRVMLDSG-----ALSSLIFWGPPGVGKTTIARLLADET 79 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +NF S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 80 ALNFVQISAIFTGMPDLRKVFEAAKIRRTNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 139 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 140 I-LLVGATTENPSFELN 155 >gi|307247443|ref|ZP_07529489.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856059|gb|EFM88216.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 428 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 1 MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 56 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A +LTN L D+ Sbjct: 116 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 162 >gi|116251573|ref|YP_767411.1| recombination factor protein RarA [Rhizobium leguminosarum bv. viciae 3841] gi|115256221|emb|CAK07302.1| putative ATPase AAA family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 438 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + TGQ LK IE+ +L ++F GPPG GKTT+A++++ E Sbjct: 24 LRPKTLADVTGQEHLTGEDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78 Query: 79 GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + DL A L ++ R +LF+DEIHR + ++ P MED Sbjct: 79 GLAFEQISA-IFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 138 TV-ILVGATTENPSFELN 154 >gi|317181763|dbj|BAJ59547.1| recombination factor protein RarA [Helicobacter pylori F57] Length = 391 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 12/117 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++A L Sbjct: 5 SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 + F +T K L L N ++ + V+FIDE HRL+ +E L P ME Sbjct: 63 RPILLFNATD----FKLEGLRLKLKNYQNTLLKPVIFIDETHRLNKTQQEFLLPIME 115 >gi|241204199|ref|YP_002975295.1| recombination factor protein RarA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858089|gb|ACS55756.1| AAA ATPase central domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 438 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + TGQ LK IE+ +L ++F GPPG GKTT+A++++ E Sbjct: 24 LRPKTLADVTGQEHLTGEDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78 Query: 79 GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + DL A L ++ R +LF+DEIHR + ++ P MED Sbjct: 79 GLAFEQISA-IFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 138 TV-ILVGATTENPSFELN 154 >gi|284048963|ref|YP_003399302.1| AAA ATPase central domain protein [Acidaminococcus fermentans DSM 20731] gi|283953184|gb|ADB47987.1| AAA ATPase central domain protein [Acidaminococcus fermentans DSM 20731] Length = 439 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 18/169 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL+EF GQ + K+ + + + ++F GPPG+GKTTLAQ++A N Sbjct: 19 LRPRTLDEFVGQEQLLGPGKILWNLIEE--DRISSMIFWGPPGVGKTTLAQIIAHTTRAN 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V + ++ ++ ++ R ++F+DEIHR + ++ P +E + Sbjct: 77 FINFSA-VTSGIKEIRTVMQRADENRRFGARTIVFVDEIHRFNRAQQDAFLPFVEKGAI- 134 Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTRV--GLLTNPLQDRFGI 176 +++G S ++N LSR F L A + G+L L D G Sbjct: 135 ILIGATTENPSFEVNGALLSRCKVFVLKALDEKAIKGILKRALTDPRGF 183 >gi|327405355|ref|YP_004346193.1| AAA ATPase central domain-containing protein [Fluviicola taffensis DSM 16823] gi|327320863|gb|AEA45355.1| AAA ATPase central domain protein [Fluviicola taffensis DSM 16823] Length = 424 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 21/154 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L E+ GQ +E LK IE+ + L ++F GPPG+GKTTLA ++A++L Sbjct: 9 MRPNELSEYIGQRHLLEENGALKKAIES-----KILPSIIFWGPPGVGKTTLANLLAKQL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S + + D+ ++ E + VLFIDEIHR S ++ L A+E Sbjct: 64 NRPFYTLSA-ISSGVKDIREIIQKAESQGMFQTSGAVLFIDEIHRFSKSQQDSLLGAVEK 122 Query: 132 FQLDLM--VGEGPSARSVKINLSR---FTLIAAT 160 + L+ E PS + LSR +TL + T Sbjct: 123 GTITLIGATTENPSFEVISALLSRCQVYTLESHT 156 >gi|78219446|gb|ABB38795.1| Recombination protein MgsA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 375 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 33/219 (15%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF 110 A L +LF GPPG GK+T+A ++AR G + S P +AG L L +L +L Sbjct: 3 ASRLPSLLFFGPPGCGKSTIALLLARNTGQKYIRISAP---EAG-LQQLRKSLAGVRILV 58 Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTN 168 +DE+HR S ++ P +E ++ L+ E PS + LSR + Sbjct: 59 LDELHRFSKAQQDFFLPVLESGEVTLLASTTENPSFSVTRQLLSRMHV------------ 106 Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228 +RL DL T+ +RGA+ G A+ D+ +A + G R L+ Sbjct: 107 ---------LRLKPLAHSDLLTLARRGAEAQGAALKDDVCEMLATVAHGDARTLLNLVEY 157 Query: 229 VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDL 265 V E + T E AAL L + DK G ++ Sbjct: 158 VAGLPE----EKQTPEAVKAALPELVMRHDKDGDSHYEI 192 >gi|53804168|ref|YP_114220.1| recombination factor protein RarA [Methylococcus capsulatus str. Bath] gi|53757929|gb|AAU92220.1| ATPase, AAA family [Methylococcus capsulatus str. Bath] Length = 435 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 13/168 (7%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 +S + SQ AD LRPRTL+E+ GQ+ + E+ R L ++F GPPG GK Sbjct: 1 MSADFSQPLAD--RLRPRTLDEYIGQLHLIEPGRPLYESI--RRGRLHSMIFWGPPGTGK 56 Query: 68 TTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 TTLA++VAR F S + I +A A R +LF+DE+HR + + Sbjct: 57 TTLARLVARHADAEFLPVSAVLSGVKEIREALARAVQFKAAGRRAILFVDEVHRFNKSQQ 116 Query: 123 EILYPAMEDFQLDLM--VGEGPS--ARSVKINLSRFTLIAATTRVGLL 166 + +ED + + E PS S ++ +R ++ A T LL Sbjct: 117 DAFLAHVEDGTVSFIGATTENPSFEVNSALLSRARVYVLKALTEADLL 164 >gi|307251991|ref|ZP_07533892.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860683|gb|EFM92695.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 443 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 16 MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 70 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 71 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 130 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A +LTN L D+ Sbjct: 131 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 177 >gi|307256490|ref|ZP_07538271.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864900|gb|EFM96802.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 428 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 1 MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 56 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A +LTN L D+ Sbjct: 116 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 162 >gi|191636983|ref|YP_001986149.1| recombination factor protein RarA [Lactobacillus casei BL23] gi|190711285|emb|CAQ65291.1| Chromosome segregation helicase (Putative) [Lactobacillus casei BL23] gi|327381009|gb|AEA52485.1| hypothetical protein LC2W_0149 [Lactobacillus casei LC2W] gi|327384185|gb|AEA55659.1| hypothetical protein LCBD_0159 [Lactobacillus casei BD-II] Length = 448 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 43/264 (16%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+TL+EF GQ KV + + + ++F GPPG+GKTTLA+++AR Sbjct: 16 SRMRPQTLDEFVGQTHLLGKDKVL--SNLIEHDEISSMIFWGPPGVGKTTLARIIARRTK 73 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S V + ++ ++ E + ++F+DEIHR + ++ P +E Sbjct: 74 AQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGS 132 Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185 + +++G S ++N LSR F L T+ V LL L+D Sbjct: 133 I-ILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD------------- 178 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 RG L + + + +IA + G RIA L AE +T Sbjct: 179 -------PRGYGLQKVKIGKKLLAQIADFANGDARIALNTLEMAVTNAETK-GGVVTVTQ 230 Query: 246 ADAALL----RLAIDKMGFDQLDL 265 AD A L L DK G + +L Sbjct: 231 ADVAQLLTKKALLYDKNGEEHYNL 254 >gi|307263100|ref|ZP_07544722.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871726|gb|EFN03448.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 443 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 16 MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 70 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 71 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 130 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A +LTN L D+ Sbjct: 131 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 177 >gi|294673569|ref|YP_003574185.1| AAA family ATPase [Prevotella ruminicola 23] gi|294473348|gb|ADE82737.1| ATPase, AAA family [Prevotella ruminicola 23] Length = 424 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 9 LRPRTLDEYIGQEHLVGEGAVLRKMIDAGR-----IPSFILWGPPGVGKTTLAQIIAHKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ E +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVREVIERAQKGRFFNEASPILFIDEIHRFSKSQQDSLLGAVEK 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GIVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|190149782|ref|YP_001968307.1| hypothetical protein APP7_0513 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914913|gb|ACE61165.1| hypothetical protein APP7_0513 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 446 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 19 MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 73 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 74 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 133 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A +LTN L D+ Sbjct: 134 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 180 >gi|120403620|ref|YP_953449.1| recombination factor protein RarA [Mycobacterium vanbaalenii PYR-1] gi|119956438|gb|ABM13443.1| Recombination protein MgsA [Mycobacterium vanbaalenii PYR-1] Length = 429 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 48/261 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ ++ S L+ IE + A + V+ GPPG GKTTLA ++++ Sbjct: 17 MRPASLDEVVGQGHLLKPNSPLRRLIEGSGAAS-----VILYGPPGTGKTTLASMISQAT 71 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 G F + S + D+A + ++ VLFIDE+HR S ++ L A+E+ Sbjct: 72 GRRFEALSALAAGVKEVRAVIDVARQASMRGEQTVLFIDEVHRFSKTQQDALLAAVENRV 131 Query: 134 LDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + L+ E PS F+++A PL R I ++L ED+ T+ Sbjct: 132 VLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLQPLTPEDVTTV 170 Query: 192 VQRGAK----LTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 ++R + L G +AVTDEA ++ S G R A L + E +T E+ Sbjct: 171 IRRAIEDPRGLGGKVAVTDEAVDQLVQLSAGDARRALTALEVASESGE-----EVTVEVI 225 Query: 247 DAALLRLAI--DKMGFDQLDL 265 + +L + A+ D+ G D+ Sbjct: 226 EQSLDKAAVRYDRDGDQHYDV 246 >gi|319892681|ref|YP_004149556.1| Uncharacterized ATPase (AAA family) associated with cysteine desulfurase [Staphylococcus pseudintermedius HKU10-03] gi|317162377|gb|ADV05920.1| Uncharacterized ATPase (AAA family) associated with cysteine desulfurase [Staphylococcus pseudintermedius HKU10-03] Length = 423 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 17/205 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RPR ++E GQ + A+ L ++F GPPG+GKT++AQ +A Sbjct: 8 SRMRPRNIDEVIGQQHLVGETGIIRRMVNAKR--LSSMIFYGPPGIGKTSIAQAIAGSTA 65 Query: 80 VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + V D+ ++ + + +L +DEIHRL ++ L P +E+ ++ ++ Sbjct: 66 FKFRQLNA-VTNTKKDMQMIVDEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 +G S IN A +R + D+ I + LN + +ED +RG K Sbjct: 124 IGATTSNPYHAIN------PAIRSRAQIFELFPLDKNDIKVALN-HALED----EERGLK 172 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIA 222 ++ D+A A +S+G R A Sbjct: 173 QFDASIDDDAFEYFATQSQGDVRSA 197 >gi|303249802|ref|ZP_07336006.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651369|gb|EFL81521.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 446 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 19 MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 73 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 74 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 133 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A +LTN L D+ Sbjct: 134 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 180 >gi|227533349|ref|ZP_03963398.1| recombination ATPase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189020|gb|EEI69087.1| recombination ATPase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 448 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 43/264 (16%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+TL+EF GQ KV + + + ++F GPPG+GKTTLA+++AR Sbjct: 16 SRMRPQTLDEFVGQTHLLGKDKVLSNLIEH--DEISSMIFWGPPGVGKTTLARIIARRTK 73 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S V + ++ ++ E + ++F+DEIHR + ++ P +E Sbjct: 74 AQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGS 132 Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185 + +++G S ++N LSR F L T+ V LL L+D Sbjct: 133 I-ILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD------------- 178 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 RG L + + + +IA + G RIA L AE +T Sbjct: 179 -------PRGYGLQKVKIGKKLLAQIADFANGDARIALNTLEMAVTNAETK-GGVVTVTQ 230 Query: 246 ADAALL----RLAIDKMGFDQLDL 265 AD A L L DK G + +L Sbjct: 231 ADVAQLLTKKALLYDKNGEEHYNL 254 >gi|89073399|ref|ZP_01159923.1| putative ATPase protein [Photobacterium sp. SKA34] gi|89050886|gb|EAR56360.1| putative ATPase protein [Photobacterium sp. SKA34] Length = 428 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 25/221 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+EE+ GQ K A +A L ++ GPPG GKTTLA+V A Sbjct: 1 MRPRTVEEYIGQQHILGQGKPLRRALEA--GQLHSMILWGPPGTGKTTLAEVAAHYANAE 58 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ A + D R +LF+DE+HR + ++ P +ED + Sbjct: 59 VERVSA-VTSGIKDIRAAIDKARDNKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 117 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + E PS LSR +RV L + L+D + + IE + Sbjct: 118 FIGATTENPSFELNNALLSR-------SRVYKLKS-LEDDEILQV------IEQALMDKE 163 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 RG T L D+ ++A RG R++ L ++ D +E Sbjct: 164 RGVTETNLHFADDIKDKLAEFVRGDARMSLNYLEQLIDMSE 204 >gi|46580096|ref|YP_010904.1| recombination factor protein RarA [Desulfovibrio vulgaris str. Hildenborough] gi|120602446|ref|YP_966846.1| recombination factor protein RarA [Desulfovibrio vulgaris DP4] gi|46449512|gb|AAS96163.1| ATPase, AAA family [Desulfovibrio vulgaris str. Hildenborough] gi|120562675|gb|ABM28419.1| Recombination protein MgsA [Desulfovibrio vulgaris DP4] gi|311233905|gb|ADP86759.1| AAA ATPase central domain protein [Desulfovibrio vulgaris RCH1] Length = 411 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 11/138 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP LE F GQ ++ + RA L +L GPPG GK+TLA ++A+ N Sbjct: 11 LRPTVLEGFVGQTHLTQRIEALL-----RANRLPSLLLFGPPGCGKSTLALLLAKARSAN 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQLDLMVG 139 S P +AG L L L D+L +DE+HR S ++ P +E D + Sbjct: 66 VLRLSAP---EAG-LQHLRKQLHGVDILVLDELHRFSKAQQDFFLPLLESGDITMLATTT 121 Query: 140 EGPSARSVKINLSRFTLI 157 E PS + LSR ++ Sbjct: 122 ENPSFSVTRQLLSRLHVL 139 >gi|317968012|ref|ZP_07969402.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. CB0205] Length = 727 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L++F GQ E ++ A A + + +++F GPPG+GKTTLA+++A + Sbjct: 23 LRPRSLDDFQGQEEILGPGRLLRRAINA--DRVGNLIFYGPPGVGKTTLARIIAATTRAH 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F S + V+A DL + + R +LFIDE+HR + ++ L P +E+ Sbjct: 81 FSSLNA-VLAGVKDLRHEVDEAKRRLDQHGLRSLLFIDEVHRFNSAQQDALLPWVEN 136 >gi|289578776|ref|YP_003477403.1| ATPase AAA [Thermoanaerobacter italicus Ab9] gi|289528489|gb|ADD02841.1| AAA ATPase central domain protein [Thermoanaerobacter italicus Ab9] Length = 443 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 116/260 (44%), Gaps = 38/260 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL+EF GQ K+ E + + + ++ GPPG+GKTTLA ++A Sbjct: 23 MRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V++ ++ ++ E R V+FIDEIHR + ++ P +E + Sbjct: 81 FVTFSA-VLSGIKEIKEIMAKAELDAMHGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNII 139 Query: 136 LM--VGEGPS--ARSVKINLSRFTLIAATTR---VGLLTNPLQDRFGIPIRLNFYEIEDL 188 L+ E PS S ++ S+ ++ T+ + LL L+D Sbjct: 140 LIGATTENPSFEVNSALLSRSKVFVMKPLTKEDLLILLKRALKDE--------------- 184 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IA 246 Q G + + +T+E IA+ + G R+A L A+V + I + +A Sbjct: 185 ----QNGLGMYKIGITEEQLKRIALFANGDARVALNTLEIAVMGAKVTEGRRIVTDDILA 240 Query: 247 DAALLR-LAIDKMGFDQLDL 265 DA + L DK G + +L Sbjct: 241 DAMQKKTLLYDKQGEEHYNL 260 >gi|228470835|ref|ZP_04055683.1| ATPase, AAA family [Porphyromonas uenonis 60-3] gi|228307508|gb|EEK16513.1| ATPase, AAA family [Porphyromonas uenonis 60-3] Length = 436 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 20/147 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TLEE+ GQ V A + L+V +E + ++ GPPG+GKTTLA+++++ + Sbjct: 12 MRPKTLEEYVGQSHLVGANAPLRVMLERGH-----IPSMILWGPPGVGKTTLARLLSQLM 66 Query: 79 GVNFRSTSG---------PVIAKAGDL-AALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 S S + +A D A L + + R +LFIDEIHR S ++ L A Sbjct: 67 QCRCYSLSAVGSGVADVRKTLQEAKDAQAGLFSQHQGRPILFIDEIHRFSKSQQDSLLAA 126 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSR 153 +E + L+ E PS + ++ LSR Sbjct: 127 VEQGVVTLIGATTENPSFQVIRPLLSR 153 >gi|83854945|ref|ZP_00948475.1| ATPase, AAA family protein [Sulfitobacter sp. NAS-14.1] gi|83842788|gb|EAP81955.1| ATPase, AAA family protein [Sulfitobacter sp. NAS-14.1] Length = 435 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR+L E GQ + + L V +++ +L ++F GPPG+GKTT+A+++A E Sbjct: 23 LRPRSLGEVIGQSQVLGPDAPLTVMLQSG-----SLGSLIFWGPPGVGKTTIARLLADET 77 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K D A + +LF+DEIHR + ++ P MED Sbjct: 78 DLHFVQISAIFSGVPELRKVFDAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 138 I-LLVGATTENPSFELN 153 >gi|307249662|ref|ZP_07531648.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858360|gb|EFM90430.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 446 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 19 MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 73 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 74 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 133 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A +LTN L D+ Sbjct: 134 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 180 >gi|303252682|ref|ZP_07338845.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648650|gb|EFL78843.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 446 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 19 MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 73 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 74 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 133 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A +LTN L D+ Sbjct: 134 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 180 >gi|237736637|ref|ZP_04567118.1| ATPase [Fusobacterium mortiferum ATCC 9817] gi|229420499|gb|EEO35546.1| ATPase [Fusobacterium mortiferum ATCC 9817] Length = 410 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 40/223 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++LE+F GQ + L+ IE + + + +F GPPG GK++L +++++ + Sbjct: 20 LRPQSLEDFIGQEKLLGKGGILRKLIER-----QNISNSIFYGPPGCGKSSLGEIISKSI 74 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 NF T A DL ++ + + +LF+DEIHR + + ++ L E+ Sbjct: 75 NSNFE-TLNATTASLNDLREVVERAKKSIEFYGKKTILFLDEIHRFNKMQQDALLSHCEN 133 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLK 189 TLI ATT L N L R I E +D++ Sbjct: 134 --------------------GTITLIGATTENPYYSLNNALLSRVMI-FEFKALERKDIE 172 Query: 190 TIVQRG-AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231 IV+RG KL V+DE I S+G RIA L ++ Sbjct: 173 KIVRRGIEKLELKDVSDEIIECILDISQGDSRIALNYLELYKN 215 >gi|227486699|ref|ZP_03917015.1| crossover junction endodeoxyribonuclease ATPase [Anaerococcus lactolyticus ATCC 51172] gi|227235287|gb|EEI85302.1| crossover junction endodeoxyribonuclease ATPase [Anaerococcus lactolyticus ATCC 51172] Length = 439 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 14/142 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+T++ + GQ K+ KA + + ++F GPPG+GKTTLA++++ + Sbjct: 22 LRPKTIDAYIGQDHLVGEGKIIRRMIKA--DRIYSMIFYGPPGVGKTTLAKIISNSTHMA 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V + GDL + +D + +LFIDEIHR + ++ L P +ED + Sbjct: 80 FEEVSA-VASGIGDLKEKIQIAKDNLAYENKKTILFIDEIHRFNKSQQDYLLPFVEDATI 138 Query: 135 DLMVG---EGPSARSVKINLSR 153 +++G E P K +SR Sbjct: 139 -ILIGATTENPYFEVNKALISR 159 >gi|312127885|ref|YP_003992759.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311777904|gb|ADQ07390.1| AAA ATPase central domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 441 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 36/222 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE GQ S K K + L ++ GPPG GKTT+A V+A G Sbjct: 22 LRPKRLEEIIGQEHILSPGKPLYNLIKN--DRLTSIILYGPPGTGKTTIAHVIANATGKT 79 Query: 82 FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F++ + IA D+ ++ + + +LFIDEIHR + + ++ L P++E+ + Sbjct: 80 FKTINA-TIAGVNDIKKIIEEAKIEFSQTGRKTILFIDEIHRFNKLQQDALLPSVEE-GI 137 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 +++G ++N + L++ + L PL++ ED+ I++R Sbjct: 138 IILIGATTENPFYEVNKA---LVSRSLVFELF--PLKE-------------EDILKIIER 179 Query: 195 GA--KLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRRV 229 K GL + D+A IA S G R+A +L V Sbjct: 180 AISDKENGLGELNIQIEDDAKKLIAKLSGGDARVALNILEAV 221 >gi|227522807|ref|ZP_03952856.1| recombination ATPase [Lactobacillus hilgardii ATCC 8290] gi|227090008|gb|EEI25320.1| recombination ATPase [Lactobacillus hilgardii ATCC 8290] Length = 441 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL +F GQ + KV E ++ + L ++F GPPG GKTTLA+++A++ Sbjct: 21 VRPQTLADFAGQQQLLGKGKVLREIIES--DQLPSMIFWGPPGSGKTTLAEIIAKKTKAK 78 Query: 82 FRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V + D+ L+ N+ + ++F+DEIHR + ++ P +E + Sbjct: 79 FVTFSA-VTSGIRDIRKLMKDAEANRNMGGKTIVFVDEIHRFNKAQQDAFLPFVEKGSIT 137 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 138 LIGATTENPS 147 >gi|312793248|ref|YP_004026171.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180388|gb|ADQ40558.1| AAA ATPase central domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 441 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE GQ S K K + L ++ GPPG GKTT+A V+A G Sbjct: 22 LRPKRLEEIVGQEHILSPGKPLYNLIKN--DRLTSIILYGPPGTGKTTIAHVIANATGKT 79 Query: 82 FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F++ + IA D+ ++ + + +LFIDEIHR + + ++ L P++E+ Sbjct: 80 FKTINA-TIAGVNDIKKIIEEAKIEFSQTGRKTILFIDEIHRFNKLQQDALLPSVEE 135 >gi|227509636|ref|ZP_03939685.1| recombination ATPase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190998|gb|EEI71065.1| recombination ATPase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 441 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL +F GQ KV E ++ + L ++F GPPG GKTTLA+++A++ Sbjct: 21 VRPQTLADFAGQQHLLGKGKVLREIIES--DQLPSMIFWGPPGSGKTTLAEIIAKKTKAK 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLE-DRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V + D+ L+ + E +RD ++F+DEIHR + ++ P +E + Sbjct: 79 FVTFSA-VTSGIRDIRKLMKDAEANRDMGGKTIVFVDEIHRFNKAQQDAFLPFVEKGSIT 137 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 138 LIGATTENPS 147 >gi|218130825|ref|ZP_03459629.1| hypothetical protein BACEGG_02420 [Bacteroides eggerthii DSM 20697] gi|217987169|gb|EEC53500.1| hypothetical protein BACEGG_02420 [Bacteroides eggerthii DSM 20697] Length = 423 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDEYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|329955240|ref|ZP_08296197.1| ATPase, AAA family [Bacteroides clarus YIT 12056] gi|328526239|gb|EGF53258.1| ATPase, AAA family [Bacteroides clarus YIT 12056] Length = 431 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDEYIGQKHLVGQGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|227512582|ref|ZP_03942631.1| recombination ATPase [Lactobacillus buchneri ATCC 11577] gi|227084197|gb|EEI19509.1| recombination ATPase [Lactobacillus buchneri ATCC 11577] Length = 441 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL +F GQ + KV E ++ + L ++F GPPG GKTTLA+++A++ Sbjct: 21 VRPQTLADFAGQQQLLGKGKVLREIIES--DQLPSMIFWGPPGSGKTTLAEIIAKKTKAK 78 Query: 82 FRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V + D+ L+ N+ + ++F+DEIHR + ++ P +E + Sbjct: 79 FVTFSA-VTSGIRDIRKLMKDAEANRNMGGKTIVFVDEIHRFNKAQQDAFLPFVEKGSIT 137 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 138 LIGATTENPS 147 >gi|312876940|ref|ZP_07736915.1| AAA ATPase central domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796255|gb|EFR12609.1| AAA ATPase central domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 441 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE GQ S K K + L ++ GPPG GKTT+A V+A G Sbjct: 22 LRPKRLEEIVGQEHILSPGKPLYNLIKN--DRLTSIILYGPPGTGKTTIAHVIANATGKT 79 Query: 82 FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F++ + IA D+ ++ + + +LFIDEIHR + + ++ L P++E+ Sbjct: 80 FKTINA-TIAGVNDIKKIIEEAKIEFSQTGRKTILFIDEIHRFNKLQQDALLPSVEE 135 >gi|167762677|ref|ZP_02434804.1| hypothetical protein BACSTE_01035 [Bacteroides stercoris ATCC 43183] gi|167699017|gb|EDS15596.1| hypothetical protein BACSTE_01035 [Bacteroides stercoris ATCC 43183] Length = 422 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDEYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|147677387|ref|YP_001211602.1| recombination factor protein RarA [Pelotomaculum thermopropionicum SI] gi|146273484|dbj|BAF59233.1| ATPase [Pelotomaculum thermopropionicum SI] Length = 440 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 17/145 (11%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVG 61 E + +N++ + +RPRTL+EF Q L+ IE + + +F G Sbjct: 5 EQAMKKNLAMAAPLATRMRPRTLDEFEEQHGVAGPGTLLRRLIEE-----DNISSAIFFG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEI 114 PPG GKTTLA ++A +F + + V+A GD+ ++ +R +LFIDEI Sbjct: 60 PPGTGKTTLASIIAGMTRAHFETINA-VMAGVGDIKRVVEESRERLALYNQKTILFIDEI 118 Query: 115 HRLSIIVEEILYPAMEDFQLDLMVG 139 HR + ++ L P +E+ Q+ +M+G Sbjct: 119 HRFNRTQQDALLPFVENGQI-IMIG 142 >gi|294790942|ref|ZP_06756100.1| ATPase, AAA family [Scardovia inopinata F0304] gi|294458839|gb|EFG27192.1| ATPase, AAA family [Scardovia inopinata F0304] Length = 506 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 13/152 (8%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +E+ GQ +A S L+ + A ++ GPPG+GKTTLA + AR+ Sbjct: 29 MRPTRVEDVVGQGQALQPGSPLRRVAQPPAHSRTAPTSIILFGPPGVGKTTLAYIAARQS 88 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 G F S V + DL +L +R VLFIDE+HR S ++ L P++E+ Sbjct: 89 GRAFEELSA-VTSGVKDLRQVLQRAHERLVSQGKETVLFIDEVHRFSKSQQDALLPSVEN 147 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT 161 + + E PS + LSR ++ T Sbjct: 148 RDITFIGATTENPSFSIISPLLSRSVVVKLET 179 >gi|116629635|ref|YP_814807.1| recombination factor protein RarA [Lactobacillus gasseri ATCC 33323] gi|116095217|gb|ABJ60369.1| Helicase subunit of the Holliday junction resolvase related ATPase [Lactobacillus gasseri ATCC 33323] Length = 429 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ L +F GQ + + + K +L GPPG GKT+LAQ++ARE Sbjct: 13 LIRPKDLSQFVGQKDLIEEGRPLYQIIKKHVPI--SLLLWGPPGTGKTSLAQIIAREFDY 70 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + + + KA + T VL IDEIHR++ +++ L P +E+ ++ L++G Sbjct: 71 PLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIHRMTTTLQDFLLPYLENGRI-LLIG 128 >gi|238854285|ref|ZP_04644629.1| recombination factor protein RarA [Lactobacillus gasseri 202-4] gi|282851165|ref|ZP_06260532.1| ATPase, AAA family [Lactobacillus gasseri 224-1] gi|238833096|gb|EEQ25389.1| recombination factor protein RarA [Lactobacillus gasseri 202-4] gi|282557697|gb|EFB63292.1| ATPase, AAA family [Lactobacillus gasseri 224-1] Length = 426 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ L +F GQ + + + K +L GPPG GKT+LAQ++ARE Sbjct: 10 LIRPKDLSQFVGQKDLIEEGRPLYQIIKKHVPI--SLLLWGPPGTGKTSLAQIIAREFDY 67 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + + + KA + T VL IDEIHR++ +++ L P +E+ ++ L++G Sbjct: 68 PLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIHRMTTTLQDFLLPYLENGRI-LLIG 125 >gi|255692090|ref|ZP_05415765.1| replication-associated recombination protein A [Bacteroides finegoldii DSM 17565] gi|260622242|gb|EEX45113.1| replication-associated recombination protein A [Bacteroides finegoldii DSM 17565] Length = 425 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDEYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E+ Sbjct: 63 ETPFFTLSA-VTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|323464281|gb|ADX76434.1| ATPase AAA family protein [Staphylococcus pseudintermedius ED99] Length = 423 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 17/205 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RPR ++E GQ + A+ L ++F GPPG+GKT++AQ +A Sbjct: 8 SRMRPRNIDEVIGQQHLVGETGIIRRMVNAKR--LSSMIFYGPPGIGKTSIAQAIAGSTA 65 Query: 80 VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + V D+ ++ + + +L +DEIHRL ++ L P +E+ ++ ++ Sbjct: 66 FKFRQLNA-VTNTKKDMQMIVDEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 +G S IN A +R + D+ I + LN + +ED +RG K Sbjct: 124 IGATTSNPYHAIN------PAIRSRAQIFELFPLDKDDIKVALN-HALED----EERGLK 172 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIA 222 ++ D+A A +S+G R A Sbjct: 173 QFDASIDDDAFEYFATQSQGDVRSA 197 >gi|325478638|gb|EGC81750.1| ATPase, AAA family [Anaerococcus prevotii ACS-065-V-Col13] Length = 439 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 12/141 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E+ GQ K+ KA + + +F GPPG+GKT+LA++++ + + Sbjct: 22 LRPKNLDEYIGQEHLVGEGKIINRMIKA--DRIYSCIFYGPPGVGKTSLAKIISEKTNMA 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V + DL + +D + +LFIDEIHR + ++ L P +ED + Sbjct: 80 FEEISA-VASGISDLKKKVQIAKDNLSFENKKTILFIDEIHRFNKSQQDYLLPFVEDSTI 138 Query: 135 DLM--VGEGPSARSVKINLSR 153 L+ E P K +SR Sbjct: 139 TLIGATTENPYFEINKALISR 159 >gi|237742495|ref|ZP_04572976.1| ATPase [Fusobacterium sp. 4_1_13] gi|229430143|gb|EEO40355.1| ATPase [Fusobacterium sp. 4_1_13] Length = 407 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 41/230 (17%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L +N + LRP++L+EF GQ + V L + +F GPPG Sbjct: 2 NLFQKNYKNVEPLAYKLRPKSLDEFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGC 59 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLS 118 GK++L ++++ L NF + IA D+ ++ N+E R +LF+DEIHR + Sbjct: 60 GKSSLGEIISNTLDCNFEKLNA-TIASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIP 177 ++ L ED L TLI ATT NP + + Sbjct: 119 KNQQDALLSYTEDGTL--------------------TLIGATTE-----NPYYNINNALL 153 Query: 178 IRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 R+ +E ED+ ++ +G + ++D+ I S+G RIA Sbjct: 154 SRVMVFEFKALTNEDIVKLINKGLNFLNINMSDKIKEIIVDISQGDSRIA 203 >gi|189466213|ref|ZP_03014998.1| hypothetical protein BACINT_02583 [Bacteroides intestinalis DSM 17393] gi|189434477|gb|EDV03462.1| hypothetical protein BACINT_02583 [Bacteroides intestinalis DSM 17393] Length = 424 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDEYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQGSPILFIDEIHRFSKSQQDSLLGAVEQ 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|114566015|ref|YP_753169.1| recombination factor protein RarA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336950|gb|ABI67798.1| Recombination protein MgsA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 440 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 77/268 (28%), Positives = 118/268 (44%), Gaps = 41/268 (15%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ + S L IE + L + GPPG GKTT+A ++AR Sbjct: 22 MRPRSLDEVVGQEHIIGPDSPLHQAIENDR-----LQSFVLYGPPGSGKTTIAHIIARTT 76 Query: 79 GVNF------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ S G + A D A L + ++F+DEIHR + +++L P +ED Sbjct: 77 SSHYAAIKAVSSGVGEIRKIAADAADHLKYYQQSSIIFVDEIHRFNKSQQDVLLPYVEDG 136 Query: 133 QLDLMVGEGPSARSVKIN---LSRFTL-IAATTRVGLLTNPLQDRFGIPIR-LNFYEI-- 185 L +++G +IN LSR L I L ++ P R L + I Sbjct: 137 TL-ILIGATTENPLYEINNALLSRMKLYIMEALNANSLRRIVEQALADPERGLGKHNISI 195 Query: 186 --EDLKTIVQ--RGAKLTGLAVTDEAACEIAMRS---RGTP----RIAGRLLRRVRDFAE 234 + + IVQ +G T L + D + + R TP ++ GRL+ + D + Sbjct: 196 DEQSMVMIVQAAQGDARTALNILDTLHNSYSSKDGSLRITPELLEKVTGRLILKY-DRSG 254 Query: 235 VAHAKTITREIA-------DAALLRLAI 255 H TI+ I DAAL LA+ Sbjct: 255 DYHYDTISAFIKSIRGSDPDAALFWLAV 282 >gi|163745570|ref|ZP_02152930.1| ATPase, AAA family protein [Oceanibulbus indolifex HEL-45] gi|161382388|gb|EDQ06797.1| ATPase, AAA family protein [Oceanibulbus indolifex HEL-45] Length = 435 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L V + + AL ++F GPPG+GKTT+A+++A E Sbjct: 23 LRPRALVEVIGQDQVLGPDAPLTVMLASG-----ALSSLIFWGPPGVGKTTIARLLADET 77 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K D A L +LF+DEIHR + ++ P MED Sbjct: 78 DLHFVQISAIFSGVPELRKVFDAAKLRRRQGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 138 I-LLVGATTENPSFELN 153 >gi|254526293|ref|ZP_05138345.1| ATPase [Prochlorococcus marinus str. MIT 9202] gi|221537717|gb|EEE40170.1| ATPase [Prochlorococcus marinus str. MIT 9202] Length = 429 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 20/143 (13%) Query: 2 MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M E L + + SQE+ + L LRP+ LE+F GQ + N + +A + + + + Sbjct: 1 MHSENLFT-DYSQEENNAPLADKLRPKNLEDFFGQ-QPILNENSLLRSAILN-DKISNFI 57 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTS---GPVIAKAGDLAALLTNLEDR-------DV 108 F GPPG+GKTTL ++++ N RS V++ +L + N +DR + Sbjct: 58 FSGPPGVGKTTLIEIIS----FNTRSKLIKLNAVLSSVKELRNEIANAKDRLINSKRKTI 113 Query: 109 LFIDEIHRLSIIVEEILYPAMED 131 LFIDE+HR + + ++ L P++E+ Sbjct: 114 LFIDEVHRFTAVQQDALLPSIEN 136 >gi|167761579|ref|ZP_02433706.1| hypothetical protein CLOSCI_03990 [Clostridium scindens ATCC 35704] gi|167660722|gb|EDS04852.1| hypothetical protein CLOSCI_03990 [Clostridium scindens ATCC 35704] Length = 437 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 24/174 (13%) Query: 20 SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S LRP +LE+F GQ L+ IE + + ++F GPPG+GKTTLA ++A Sbjct: 18 SRLRPSSLEDFVGQEHLLGKGRMLRQLIER-----DQISSMIFWGPPGVGKTTLASIIAG 72 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 +F + S V + ++ ++ E+ R VLF+DEIHR + ++ P +E Sbjct: 73 RTKADFINFSA-VTSGIKEIKEVMRQAEESRCMGIRTVLFVDEIHRFNKAQQDAFLPFVE 131 Query: 131 DFQLDLMVGEGPSARSVKIN---LSR---FTLIA--ATTRVGLLTNPLQDRFGI 176 + +++G S ++N LSR F L A T V LLTN L G+ Sbjct: 132 KGSI-VLIGATTENPSFEVNAALLSRCRVFVLKALEETDLVKLLTNALNSPAGL 184 >gi|269836458|ref|YP_003318686.1| AAA ATPase central domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269785721|gb|ACZ37864.1| AAA ATPase central domain protein [Sphaerobacter thermophilus DSM 20745] Length = 460 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 14/146 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ + + A + + L ++ GPPG GKTTLA+++A Sbjct: 22 MRPRTLDEFVGQEQVVGPGTLLRRAIEQ--DRLSSLILWGPPGSGKTTLARIIATVTKAE 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V A DL + D R +LFIDEIHR + ++ + P +ED + Sbjct: 80 FVQVSA-VSAGVADLRREVKEASDRLGMHGRRTILFIDEIHRFNRAQQDAILPYVEDGTI 138 Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157 +++G S ++N LSR +I Sbjct: 139 -ILIGATTENPSFEVNSPLLSRSRVI 163 >gi|163740269|ref|ZP_02147663.1| recombination protein [Phaeobacter gallaeciensis 2.10] gi|161386127|gb|EDQ10502.1| recombination protein [Phaeobacter gallaeciensis 2.10] Length = 440 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L E GQ + L V + + +L ++F GPPG+GKTT+A+++ARE Sbjct: 28 LRPQSLAEVIGQAQVLGEDAPLGVMLASG-----SLSSLIFWGPPGVGKTTIARLLARET 82 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 83 DLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 142 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 143 I-LLVGATTENPSFELN 158 >gi|163739476|ref|ZP_02146886.1| AAA ATPase, central region [Phaeobacter gallaeciensis BS107] gi|161387229|gb|EDQ11588.1| AAA ATPase, central region [Phaeobacter gallaeciensis BS107] Length = 440 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L E GQ + L V + + +L ++F GPPG+GKTT+A+++ARE Sbjct: 28 LRPQSLAEVIGQAQVLGEDAPLGVMLASG-----SLSSLIFWGPPGVGKTTIARLLARET 82 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 83 DLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 142 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 143 I-LLVGATTENPSFELN 158 >gi|307322100|ref|ZP_07601476.1| AAA ATPase central domain protein [Sinorhizobium meliloti AK83] gi|306892282|gb|EFN23092.1| AAA ATPase central domain protein [Sinorhizobium meliloti AK83] Length = 436 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL E TGQ V + +L ++F GPPG GKTT+A++++ E G+ Sbjct: 23 LRPRTLAEVTGQEHLTGPDGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLSGEAGLA 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 139 ILVGATTENPSFELN 153 >gi|303326761|ref|ZP_07357203.1| ATPase, AAA family [Desulfovibrio sp. 3_1_syn3] gi|302862749|gb|EFL85681.1| ATPase, AAA family [Desulfovibrio sp. 3_1_syn3] Length = 409 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 11/138 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + +F GQ L+ ++A + L +LF GPPG GK+TLA ++A+ G Sbjct: 11 MRPDDVAQFLGQSHLADRLRSLMQAKR-----LPSLLFFGPPGCGKSTLALLLAKSTGKK 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 + S P +AG L L L ++L +DE+HR S ++ P +E +L L+ Sbjct: 66 YLRLSAP---EAG-LQHLRRALAGVEILVLDELHRFSKAQQDFFLPLVESGELTLLATTT 121 Query: 140 EGPSARSVKINLSRFTLI 157 E PS + LSR ++ Sbjct: 122 ENPSFSVTRQLLSRLHVL 139 >gi|257065126|ref|YP_003144798.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476] gi|256792779|gb|ACV23449.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476] Length = 439 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 8/134 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79 LRP +L+E+ GQ KV + +A + + ++F GPPG+GKTTLAQ++A + Sbjct: 18 LRPLSLDEYAGQKHLVGEGKVLRKLIEA--DQVSSMIFWGPPGVGKTTLAQIIAHQTNAK 75 Query: 80 -VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 VNF + + + I + A +L ++ +LF+DEIHR + ++ P +E + + Sbjct: 76 FVNFSAVTSGIKEIRQVMKQAENNRSLGEKTILFVDEIHRFNKAQQDAFLPFVEKGTI-I 134 Query: 137 MVGEGPSARSVKIN 150 ++G S ++N Sbjct: 135 LIGATTENPSFEVN 148 >gi|307314388|ref|ZP_07593994.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C] gi|306899086|gb|EFN29728.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C] Length = 436 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL E TGQ V + +L ++F GPPG GKTT+A++++ E G+ Sbjct: 23 LRPRTLAEVTGQEHLTGPDGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLSGEAGLA 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 139 ILVGATTENPSFELN 153 >gi|255327169|ref|ZP_05368244.1| recombination factor protein RarA [Rothia mucilaginosa ATCC 25296] gi|255295787|gb|EET75129.1| recombination factor protein RarA [Rothia mucilaginosa ATCC 25296] Length = 503 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 14/134 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT++E GQ + + L+V + A V+ GPPG GKTTLA V+AR Sbjct: 51 MRPRTIDEVLGQEHLLTPGAPLRV-LAGENAGPAGPSSVILYGPPGTGKTTLAHVIARAP 109 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMED 131 G F S + A D+ A++ L DRD VLF+DEIHR + ++ L P +E+ Sbjct: 110 GRKFVELSA-ITAGVKDVRAVMDQALLDRDMYGTTTVLFLDEIHRFTKAQQDALLPGVEN 168 Query: 132 FQLDLMVG--EGPS 143 + L+ E PS Sbjct: 169 RWVILVAATTENPS 182 >gi|167854588|ref|ZP_02477369.1| hypothetical protein HPS_02389 [Haemophilus parasuis 29755] gi|219872223|ref|YP_002476598.1| recombination factor protein RarA [Haemophilus parasuis SH0165] gi|167854343|gb|EDS25576.1| hypothetical protein HPS_02389 [Haemophilus parasuis 29755] gi|219692427|gb|ACL33650.1| recombination factor protein RarA [Haemophilus parasuis SH0165] Length = 447 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 13/118 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A EL Sbjct: 19 MRPRTLAEYVGQSHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIANEL 73 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 74 DAEVERLSAVTSGIKEIREAIEKAKLNRQSGRRTLLFVDEVHRFNKSQQDAFLPHIED 131 >gi|257469472|ref|ZP_05633564.1| recombination factor protein RarA [Fusobacterium ulcerans ATCC 49185] gi|317063716|ref|ZP_07928201.1| ATPase [Fusobacterium ulcerans ATCC 49185] gi|313689392|gb|EFS26227.1| ATPase [Fusobacterium ulcerans ATCC 49185] Length = 409 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 41/215 (19%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP L++F GQ + L+ IE +++ + +F GPPG GK++L +++++ L Sbjct: 18 LRPTNLDDFIGQEKILGKGGVLRKLIEK-----QSISNSIFFGPPGCGKSSLGEIISKTL 72 Query: 79 GVNFRSTSGPVIAKAGDLAALL----TNLE---DRDVLFIDEIHRLSIIVEEILYPAMED 131 NF + + V A DL ++ NLE + +LF+DEIHR + + ++ L E Sbjct: 73 DSNFETLNATV-ASLNDLREIVEKAKKNLEFYGKKTILFLDEIHRFNKLQQDALLSYCES 131 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLK 189 L TLI ATT L N L R I ++++ Sbjct: 132 GIL--------------------TLIGATTENPYYSLNNALLSRVMI-FEFKSLSRDNIR 170 Query: 190 TIVQRGAKLTGL--AVTDEAACEIAMRSRGTPRIA 222 I+++G K GL ++ E I S+G RIA Sbjct: 171 EILEKGVKYIGLEEKISKEVIECILDISQGDSRIA 205 >gi|83941468|ref|ZP_00953930.1| ATPase, AAA family protein [Sulfitobacter sp. EE-36] gi|83847288|gb|EAP85163.1| ATPase, AAA family protein [Sulfitobacter sp. EE-36] Length = 435 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR+L E GQ + + L V +++ +L ++F GPPG+GKTT+A+++A E Sbjct: 23 LRPRSLGEVIGQSQVLGPDAPLTVMLQSG-----SLGSLIFWGPPGVGKTTIARLLADET 77 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K D A + +LF+DEIHR + ++ P MED Sbjct: 78 DLHFVQISAIFSGVPELRKVFDAAKIRRQNGRGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 138 I-LLVGATTENPSFELN 153 >gi|283458016|ref|YP_003362623.1| ATPase [Rothia mucilaginosa DY-18] gi|283134038|dbj|BAI64803.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Rothia mucilaginosa DY-18] Length = 513 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 14/134 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT++E GQ + + L+V + A V+ GPPG GKTTLA V+AR Sbjct: 52 MRPRTIDEVLGQEHLLTPGAPLRV-LAGENAGPAGPSSVILYGPPGTGKTTLAHVIARAP 110 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMED 131 G F S + A D+ A++ L DRD VLF+DEIHR + ++ L P +E+ Sbjct: 111 GRKFVELSA-ITAGVKDVRAVMDQALLDRDMYGTTTVLFLDEIHRFTKAQQDALLPGVEN 169 Query: 132 FQLDLMVG--EGPS 143 + L+ E PS Sbjct: 170 RWVILVAATTENPS 183 >gi|256811337|ref|YP_003128706.1| Replication factor C [Methanocaldococcus fervens AG86] gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86] Length = 316 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 69/278 (24%), Positives = 119/278 (42%), Gaps = 43/278 (15%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+TL+E GQ E LK ++E +++ H+LF GPPG+GKTT A +AR+L Sbjct: 6 VEKYRPKTLDEIVGQDEIVKRLKKYVEK-----KSMPHLLFSGPPGVGKTTAALCLARDL 60 Query: 79 -GVNFRSTSGPVIAK-AGDLAALLTNLED-----------RDVLFIDEIHRLSIIVEEIL 125 G N+R + A + + T ++D ++F+DE L+ + L Sbjct: 61 FGENWRENFLELNASDERGIDVIRTKVKDFARTKPIGDVPFKIIFLDESDALTPDAQNAL 120 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 ME + ++ RF L + + P+Q R I R + + Sbjct: 121 RRTMEKYS----------------DVCRFIL--SCNYPSKIIPPIQSRCAI-FRFSPLKK 161 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ED+ ++ A+ GL +T+ I S G R A +L+ +EV + + + Sbjct: 162 EDIAKKLKEIAEKEGLKLTESGLEAIIYVSEGDMRKAINVLQTAAALSEVIDDEIVYKVS 221 Query: 246 ADA------ALLRLAIDKMGFDQLDLRYLTMIARNFGG 277 + A ++ LA++ + DL Y M+ G Sbjct: 222 SRARPEEVKKMMELALEGKFVEARDLLYKLMVEWGMSG 259 >gi|15965138|ref|NP_385491.1| recombination factor protein RarA [Sinorhizobium meliloti 1021] gi|15074318|emb|CAC45964.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 436 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL E TGQ V + +L ++F GPPG GKTT+A++++ E G+ Sbjct: 23 LRPRTLAEVTGQEHLTGPDGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLSGEAGLA 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 139 ILVGATTENPSFELN 153 >gi|172058090|ref|YP_001814550.1| ATPase central domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990611|gb|ACB61533.1| AAA ATPase central domain protein [Exiguobacterium sibiricum 255-15] Length = 437 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 92/215 (42%), Gaps = 40/215 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L+E GQ + A A+ L V+F GPPG GKTTLA+V++ Sbjct: 18 MRPQSLDEIVGQRHLIGESTLLRRAI--LADRLGTVIFYGPPGTGKTTLARVISSYTKSA 75 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + V AK L +L E R +LF+DEIHR + + ++ L PA+E + Sbjct: 76 FEQLNA-VTAKLDQLREVLKAAESRLQFDQQKTILFLDEIHRFNKMQQDALLPALEAGTI 134 Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 L+ E PS LSR T+ RF P EDL+ ++ Sbjct: 135 TLIGATTENPSFEVNAALLSRATVF---------------RFETPT------TEDLRVVL 173 Query: 193 -------QRGAKLTGLAVTDEAACEIAMRSRGTPR 220 +RG + VT+EA S G R Sbjct: 174 HRTLHDTERGLGKYPITVTEEAVDHYVKLSDGDYR 208 >gi|293372974|ref|ZP_06619343.1| recombination factor protein RarA [Bacteroides ovatus SD CMC 3f] gi|299145353|ref|ZP_07038421.1| ATPase, AAA family [Bacteroides sp. 3_1_23] gi|292632042|gb|EFF50651.1| recombination factor protein RarA [Bacteroides ovatus SD CMC 3f] gi|298515844|gb|EFI39725.1| ATPase, AAA family [Bacteroides sp. 3_1_23] Length = 423 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E+ Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|29346615|ref|NP_810118.1| recombination factor protein RarA [Bacteroides thetaiotaomicron VPI-5482] gi|253568023|ref|ZP_04845434.1| recombination factor protein RarA [Bacteroides sp. 1_1_6] gi|29338511|gb|AAO76312.1| putative ATPase, AAA family [Bacteroides thetaiotaomicron VPI-5482] gi|251842096|gb|EES70176.1| recombination factor protein RarA [Bacteroides sp. 1_1_6] Length = 422 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E+ Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|326391411|ref|ZP_08212948.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992546|gb|EGD51001.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 443 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 118/261 (45%), Gaps = 40/261 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL+EF GQ K+ E + + + ++ GPPG+GKTTLA ++A Sbjct: 23 MRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V++ ++ ++ E R V+FIDEIHR + ++ P +E + Sbjct: 81 FITFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 138 Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIED 187 +++G S ++N LSR F + T + LL L+D+ Sbjct: 139 ILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLVLLKRALRDK-------------- 184 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--I 245 +RG + + ++ + +IA+ + G R+A L AEV K I + + Sbjct: 185 -----ERGLGMYDIEISGDQLKKIALFANGDARVALNTLEIAVMAAEVIEGKRIVTDDIL 239 Query: 246 ADAALLR-LAIDKMGFDQLDL 265 ADA + L DK G + +L Sbjct: 240 ADAMQKKTLLYDKEGEEHYNL 260 >gi|282880078|ref|ZP_06288798.1| recombination factor protein RarA [Prevotella timonensis CRIS 5C-B1] gi|281305951|gb|EFA97991.1| recombination factor protein RarA [Prevotella timonensis CRIS 5C-B1] Length = 431 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E+ GQ L+ IE+ + + GPPG+GKTTLAQ+VA +L Sbjct: 9 MRPRTLDEYVGQQHLVGKDAVLRKMIESGHVSS-----FILWGPPGVGKTTLAQIVANKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVRQVIERAKSNHFFQTASPILFIDEIHRFSKSQQDSLLGAVER 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GIVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|257066688|ref|YP_003152944.1| AAA ATPase central domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798568|gb|ACV29223.1| AAA ATPase central domain protein [Anaerococcus prevotii DSM 20548] Length = 428 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 14/142 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ GQ + K+ KA + + ++F GPPG+GKT+LA++++++ + Sbjct: 22 LRPKDLSDYLGQNHLIGDGKIINRMIKA--DRIYSMIFYGPPGVGKTSLAKIISQKTNMA 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V + DL + +D + +LFIDEIHR + ++ L P +ED L Sbjct: 80 FEEISA-VASGISDLKKKVQIAKDNLSFENKKTILFIDEIHRFNKSQQDYLLPYVEDSTL 138 Query: 135 DLMVG---EGPSARSVKINLSR 153 +++G E P K +SR Sbjct: 139 -ILIGATTENPYFEVNKALISR 159 >gi|85859697|ref|YP_461899.1| recombination factor protein RarA [Syntrophus aciditrophicus SB] gi|85722788|gb|ABC77731.1| ATPase, AAA family [Syntrophus aciditrophicus SB] Length = 478 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 115/267 (43%), Gaps = 50/267 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+EF GQ ++ S L+ IE + L V+F GPPG GKTTLA++VA E Sbjct: 45 MRPETLDEFFGQEHLLKKHSLLRRAIEEDR-----LFSVIFWGPPGSGKTTLARIVAGET 99 Query: 79 GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V++ +L A N + VLF+DEIHR + ++ P +E Sbjct: 100 KAYFAAFSA-VLSGVKELRKVVEEAEARWQNNRQKTVLFVDEIHRFNKAQQDAFLPHVES 158 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 + L+ E PS + LSR RV L+ P D EDL Sbjct: 159 GLITLIGATTENPSFEVIAPLLSR-------CRV-LVLKPFSD-------------EDLV 197 Query: 190 TIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240 I+ +RG GL + +A + + G R A L V ++ Sbjct: 198 RILNRVLRDRRRGLGNLGLELDQDALAYLVHTADGDARTALNSLEAVASLLAAGEGQSSR 257 Query: 241 ITREIADAALLR--LAIDKMGFDQLDL 265 I+R + AL + L DK G + +L Sbjct: 258 ISRVQVEEALQKKGLQYDKSGAEHYNL 284 >gi|269114890|ref|YP_003302653.1| ATPase, AAA family [Mycoplasma hominis] gi|268322515|emb|CAX37250.1| ATPase, AAA family [Mycoplasma hominis ATCC 23114] Length = 404 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 33/206 (16%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +L+RP+ LE+F E + IE R+ +F G PG GKTT++ ++A L Sbjct: 7 NLIRPKILEDFICPQEQKKLFQKIIENNDYRS-----FIFYGKPGTGKTTISYILANALK 61 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 VN+ + + K L+ L+ +L IDEIHRL+ ++IL P +E+ DL+ Sbjct: 62 VNYEYFNAAIENKED----LVHKLKLNKILIIDEIHRLNKDKQDILLPYLEN---DLI-- 112 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLT-NP-LQDRFGIPIRLNFYEIEDLKTIVQRGA- 196 T+ A TT NP L+ R I I + I+DL + ++ Sbjct: 113 ---------------TIYATTTENPYFKLNPALRSRCSI-IEITKPTIQDLSSCLKNACL 156 Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIA 222 K G+ + + A +A+++ G R A Sbjct: 157 KTFGVDLNKDIADYLALQANGDFRSA 182 >gi|187734543|ref|YP_001876655.1| ATPase AAA [Akkermansia muciniphila ATCC BAA-835] gi|187424595|gb|ACD03874.1| AAA ATPase central domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 459 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ + K+ A + + ++F GPPG GKTTLA V+AR + Sbjct: 30 MRPRTLDEVAGQKHLLAPGKLLRRAIET--DRFTSLIFYGPPGCGKTTLAAVIARTTNAH 87 Query: 82 FRSTSGPVIAKAGDL------AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130 F +G V + D+ A + ++ R VLF+DE+HR + +++L P +E Sbjct: 88 FMMLNG-VESNVADIREKIAQAQMRMSMHGRKTVLFVDELHRFNKAQQDVLLPHLE 142 >gi|237716254|ref|ZP_04546735.1| recombination factor protein RarA [Bacteroides sp. D1] gi|237721058|ref|ZP_04551539.1| recombination factor protein RarA [Bacteroides sp. 2_2_4] gi|262407859|ref|ZP_06084407.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647656|ref|ZP_06725222.1| recombination factor protein RarA [Bacteroides ovatus SD CC 2a] gi|294807679|ref|ZP_06766472.1| recombination factor protein RarA [Bacteroides xylanisolvens SD CC 1b] gi|298481000|ref|ZP_06999195.1| ATPase, AAA family [Bacteroides sp. D22] gi|229443901|gb|EEO49692.1| recombination factor protein RarA [Bacteroides sp. D1] gi|229449893|gb|EEO55684.1| recombination factor protein RarA [Bacteroides sp. 2_2_4] gi|262354667|gb|EEZ03759.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637005|gb|EFF55457.1| recombination factor protein RarA [Bacteroides ovatus SD CC 2a] gi|294445115|gb|EFG13789.1| recombination factor protein RarA [Bacteroides xylanisolvens SD CC 1b] gi|298273023|gb|EFI14589.1| ATPase, AAA family [Bacteroides sp. D22] Length = 423 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E+ Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|163840727|ref|YP_001625132.1| recombination factor protein RarA [Renibacterium salmoninarum ATCC 33209] gi|162954203|gb|ABY23718.1| ATPase, AAA family [Renibacterium salmoninarum ATCC 33209] Length = 462 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 11/133 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L+E GQ + S L+ AA A ++ GPPG GKTTLA V+AR Sbjct: 31 MRPRNLDEVLGQQHLLGEGSPLRRLSAAANDSAAGPTSLILWGPPGTGKTTLAHVIARGP 90 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILYPAMEDF 132 G +F S + K D A ++L R VLF+DEIHR + ++ L P +E+ Sbjct: 91 GRSFVELSAITAGVKDVRKVMDDALTASDLHGRTTVLFLDEIHRFTKAQQDALLPGVENR 150 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 151 WVVLVAATTENPS 163 >gi|328955597|ref|YP_004372930.1| Recombination protein MgsA [Coriobacterium glomerans PW2] gi|328455921|gb|AEB07115.1| Recombination protein MgsA [Coriobacterium glomerans PW2] Length = 462 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 28/164 (17%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L +F GQ EA S L+ IE + L V+ GP G+GKTTLA+++A Sbjct: 23 MRPSSLADFVGQSEAVGPGSWLRQAIELDR-----LSSVILFGPAGVGKTTLARIIA--- 74 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED----------RDVLFIDEIHRLSIIVEEILYPA 128 +N RS V A +G + L +ED R +LFIDEIHR S ++ L A Sbjct: 75 -MNTRSEFIEVSAVSGTVKDLRRAIEDAKRRLLSLDRRTILFIDEIHRFSKSQQDTLLHA 133 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 +ED ++ +MVG ++N + + + +R+ L PLQD Sbjct: 134 VED-RVVVMVGATTENPFFEVN----SALLSRSRIVEL-KPLQD 171 >gi|317478867|ref|ZP_07938017.1| ATPase [Bacteroides sp. 4_1_36] gi|316904949|gb|EFV26753.1| ATPase [Bacteroides sp. 4_1_36] Length = 423 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E+ GQ V + L+ I+ + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPRTLDEYIGQKHLVGPGAVLRKMIDVGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVRDVIERAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|197284594|ref|YP_002150466.1| recombination factor protein RarA [Proteus mirabilis HI4320] gi|194682081|emb|CAR41637.1| putative ATPase [Proteus mirabilis HI4320] Length = 449 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLE++ GQ + K A KA L ++ GPPG GKTTLA+++ R + Sbjct: 20 MRPETLEQYIGQKHLLAEGKPLPRAIKA--GQLHSMILWGPPGTGKTTLAEIIGRYAQAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I A D+A N R +LF+DE+HR + ++ P +ED + Sbjct: 78 IERLSAVTSGIKEIRAAIDIAHQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|259046674|ref|ZP_05737075.1| ATPase, AAA family domain protein [Granulicatella adiacens ATCC 49175] gi|259036839|gb|EEW38094.1| ATPase, AAA family domain protein [Granulicatella adiacens ATCC 49175] Length = 423 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 25/252 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+EE GQ S K+ A+ L ++ GPPG GKT++A ++ V+ Sbjct: 10 MRPRTIEEVIGQEHLVSPGKIINRMVVAKQ--LSSMILYGPPGTGKTSIASAISGSTKVS 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ ++VG Sbjct: 68 FRQLNAATDTKKDLQIVAEEAKMSGSVILLLDEIHRLDKTKQDFLLPHIENGRI-ILVGA 126 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 + IN + I + T++ L PL I +N E E +RG Sbjct: 127 TTENPYISINPA----IRSRTQIFEL-KPLSPEDIIKALVNAIEDE------ERGLGKLD 175 Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-----VAHAKTITREIADAALLR--L 253 L V++EA A + G R A L E + H IT +IA+ + R L Sbjct: 176 LDVSEEALNHFASSTNGDVRSALNALELAAKSTEPGEDGIIH---ITIQIAEECIQRKAL 232 Query: 254 AIDKMGFDQLDL 265 + DK G D+ Sbjct: 233 SYDKDGDHHYDV 244 >gi|260909479|ref|ZP_05916183.1| replication-associated recombination protein A [Prevotella sp. oral taxon 472 str. F0295] gi|260636404|gb|EEX54390.1| replication-associated recombination protein A [Prevotella sp. oral taxon 472 str. F0295] Length = 424 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+++ GQ V + L+ IEA + + + GPPG+GKTTLAQ+VA++L Sbjct: 9 MRPRSLDDYVGQKHLVGPNAVLRNMIEAGR-----IPSFILWGPPGVGKTTLAQIVAKKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVREVIEKAKGGRFFGSHSPILFIDEIHRFSKSQQDSLLGAVEK 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GIVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|227499837|ref|ZP_03929930.1| crossover junction endodeoxyribonuclease ATPase [Anaerococcus tetradius ATCC 35098] gi|227217946|gb|EEI83219.1| crossover junction endodeoxyribonuclease ATPase [Anaerococcus tetradius ATCC 35098] Length = 440 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 24/177 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LE + GQ K+ KA + + +F GPPG+GKT+LA++++++ + Sbjct: 23 LRPKNLEAYLGQDHLLGPGKIITRMIKA--DRIYSCIFYGPPGVGKTSLAKIISQKTNMA 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V + DL + +D + +LFIDEIHR + ++ L P +ED L Sbjct: 81 FEEISA-VASGINDLKKKVQIAKDNLAYENKKTILFIDEIHRFNKSQQDYLLPFVEDSTL 139 Query: 135 DLMVG---EGPSARSVKINLSR---FTLIAATTR-------VGLLTNPLQDRFGIPI 178 +++G E P K +SR F L + + R + L +P+ R I I Sbjct: 140 -ILIGATTENPYFEVNKALISRMYVFELKSLSDRDLDRLIDMALNKDPILKRKNIDI 195 >gi|227356776|ref|ZP_03841161.1| recombination ATPase [Proteus mirabilis ATCC 29906] gi|227163066|gb|EEI48001.1| recombination ATPase [Proteus mirabilis ATCC 29906] Length = 457 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLE++ GQ + K A KA L ++ GPPG GKTTLA+++ R + Sbjct: 28 MRPETLEQYIGQKHLLAEGKPLPRAIKA--GQLHSMILWGPPGTGKTTLAEIIGRYAQAD 85 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I A D+A N R +LF+DE+HR + ++ P +ED + Sbjct: 86 IERLSAVTSGIKEIRAAIDIAHQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 145 Query: 137 M--VGEGPS 143 + E PS Sbjct: 146 IGATTENPS 154 >gi|126695427|ref|YP_001090313.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT 9301] gi|126542470|gb|ABO16712.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9301] Length = 429 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 40/283 (14%) Query: 2 MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M E L + N SQ + + L LRP+ LE+F GQ + N + +A + + + + Sbjct: 1 MHSENLFT-NYSQIENNAPLADKLRPKNLEDFFGQ-QPILNENSLLRSAILN-DKISNFI 57 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTS---GPVIAKAGDLAALLTNLEDR-------DV 108 F GPPG+GKTTL ++++ N RS V++ +L + + N +DR + Sbjct: 58 FSGPPGVGKTTLIEIIS----FNTRSKLIKLNAVLSSVKELRSEIANAKDRLINSKRKTI 113 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166 LFIDE+HR + + ++ L P++E+ + + E P K +SR ++ T + L Sbjct: 114 LFIDEVHRFTAVQQDALLPSIENGTITFIGATTENPFFAVNKALVSRSSIF---TLLPLA 170 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 N LQ IE + T + + +T +A + S G R L Sbjct: 171 ENDLQKI-----------IEKVITHYSKQKDSKKVYLTQDAISHLIKFSSGDARTLINAL 219 Query: 227 RRVRDFAEVAHAKT--ITREIADAALLRLAI--DKMGFDQLDL 265 + AK I IA+ AL + I DK G + D+ Sbjct: 220 EMAIETTAANDAKEIHINLSIAEDALQKKNIVYDKNGQNHYDV 262 >gi|222085712|ref|YP_002544242.1| ATPase associated with chromosome architecture/replication protein [Agrobacterium radiobacter K84] gi|221723160|gb|ACM26316.1| ATPase associated with chromosome architecture/replication protein [Agrobacterium radiobacter K84] Length = 438 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + TGQ L+ IE+ +L ++F GPPG GKTT+A++++ E Sbjct: 24 LRPQTLADVTGQSHLTGEDGALRRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78 Query: 79 GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + DL A L ++ R +LF+DEIHR + ++ P MED Sbjct: 79 GLAFEQISA-IFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 138 TV-ILVGATTENPSFELN 154 >gi|325293302|ref|YP_004279166.1| recombination factor protein RarA [Agrobacterium sp. H13-3] gi|325061155|gb|ADY64846.1| recombination factor protein RarA [Agrobacterium sp. H13-3] Length = 438 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E TGQ L+ I++ +L ++F GPPG GKTT+A++++ E Sbjct: 24 LRPKTLAEVTGQPHLTGEEGVLRRMIDSG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + DL + R +LF+DEIHR + ++ P MED Sbjct: 79 GLAFEQISA-IFSGVADLKKVFEAARTRRMNGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 138 TI-ILVGATTENPSFELN 154 >gi|220935170|ref|YP_002514069.1| recombination factor protein RarA [Thioalkalivibrio sp. HL-EbGR7] gi|219996480|gb|ACL73082.1| recombination factor protein RarA [Thioalkalivibrio sp. HL-EbGR7] Length = 447 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E+ GQ + K A + + L +LF GPPG GKTTLA+++A G Sbjct: 22 MRPRNLDEYAGQSHLLAPGKPLRRAIEE--DRLHSMLFWGPPGTGKTTLARMIAHYCGAQ 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V++ D+ A + + VLF+DE+HR + ++ P +ED Sbjct: 80 FLTLSA-VLSGVKDIRAAVEQAREYRRMHGKPTVLFVDEVHRFNKSQQDAFLPHVED 135 >gi|52425506|ref|YP_088643.1| recombination factor protein RarA [Mannheimia succiniciproducens MBEL55E] gi|52307558|gb|AAU38058.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 446 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 13/118 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TLE++ GQ N L+ IEA A + ++F GPPG GKTTLA+++A ++ Sbjct: 20 MRPTTLEQYCGQQHLLGNGKPLRKAIEAGHAHS-----MIFWGPPGTGKTTLAEIIAHKI 74 Query: 79 GVNFRS----TSGPVIAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMED 131 TSG + A L D R +LF+DE+HR + ++ P +ED Sbjct: 75 NAEVERISAVTSGIKEIREAIERAKQNRLADRRTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|260577150|ref|ZP_05845127.1| AAA ATPase central domain protein [Rhodobacter sp. SW2] gi|259020624|gb|EEW23943.1| AAA ATPase central domain protein [Rhodobacter sp. SW2] Length = 436 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 114/257 (44%), Gaps = 41/257 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL E GQ + S A A +L ++F GPPG+GKTT+A+++A E + Sbjct: 23 LRPKTLAEVIGQGKVLSPEGPL--GAMLAAHSLSSLIFWGPPGVGKTTIARLLAHESDMA 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + DL + R +LF+DEIHR + ++ P MED + Sbjct: 81 FVQISA-IFTGVQDLRKVFEQARIRRANGQGTLLFVDEIHRFNKAQQDGFLPYMEDGTI- 138 Query: 136 LMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 L+VG E PS F L AA L R + I L ++DL+ + Sbjct: 139 LLVGATTENPS----------FELNAA----------LMSRAQV-IVLERLSLDDLERLA 177 Query: 193 QRGAKLTGLAVTDEAACEIAM--RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 QR + G A+ +A A+ + G R A L+ +V A K + RE L Sbjct: 178 QRAEQDMGRALPLKAEAREALLEMADGDGRAALNLIEQV---AAWKLDKPLDRETLSKRL 234 Query: 251 LRLA--IDKMGFDQLDL 265 +R A DK G + +L Sbjct: 235 MRRAAKYDKSGEEHYNL 251 >gi|307265951|ref|ZP_07547499.1| AAA ATPase central domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919015|gb|EFN49241.1| AAA ATPase central domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 443 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 118/261 (45%), Gaps = 40/261 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL+EF GQ K+ E + + + ++ GPPG+GKTTLA ++A Sbjct: 23 MRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V++ ++ ++ E R V+FIDEIHR + ++ P +E + Sbjct: 81 FITFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 138 Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIED 187 +++G S ++N LSR F + T + LL L+D+ Sbjct: 139 ILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLVLLKRALRDK-------------- 184 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--I 245 +RG + + ++ + +IA+ + G R+A L AEV K I + + Sbjct: 185 -----ERGLGMYDIEISGDQLKKIALFANGDARVALNTLEIAVMAAEVIEGKRIVTDDIL 239 Query: 246 ADAALLR-LAIDKMGFDQLDL 265 ADA + L DK G + +L Sbjct: 240 ADAMQKKTLLYDKEGEEHYNL 260 >gi|90415910|ref|ZP_01223843.1| hypothetical protein GB2207_01717 [marine gamma proteobacterium HTCC2207] gi|90332284|gb|EAS47481.1| hypothetical protein GB2207_01717 [marine gamma proteobacterium HTCC2207] Length = 443 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 35/244 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ F GQ K EA + L ++F GPPG+GKTTLA+++A + Sbjct: 18 MRPATLDGFYGQEHLIGLGKPLREAIEG--GTLHSMIFWGPPGVGKTTLAKIIAASADAH 75 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S S + A++ E RD +LF+DE+HR + ++ P +ED + Sbjct: 76 FESISAVLSGVKEIRASIAKATEQRDLRGRKTILFVDEVHRFNKSQQDAFLPFVEDGTV- 134 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR- 194 + +G S ++N N L R + + L + E +KT++Q+ Sbjct: 135 VFIGATTENPSFELN-----------------NALLSRCRVYV-LKSLDNEQIKTVIQQA 176 Query: 195 ------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKTITREIAD 247 G L + DEA +A + G R A LL D A E I R + + Sbjct: 177 LSDQQSGLGERQLQLDDEALDLLASAADGDARRALNLLEIANDLASESGDLAAIDRRVLE 236 Query: 248 AALL 251 L+ Sbjct: 237 QVLV 240 >gi|124024855|ref|YP_001013971.1| fused recombination factor protein RarA/unknown domain-containing protein [Prochlorococcus marinus str. NATL1A] gi|123959923|gb|ABM74706.1| Hypothetical protein NATL1_01421 [Prochlorococcus marinus str. NATL1A] Length = 734 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+EF GQ + ++ + A + + ++L GPPG+GKTTLA+++A + Sbjct: 24 LRPQTLDEFVGQDHILAQGRLLRRSIVA--DKVGNLLLYGPPGVGKTTLARIIALNTLSH 81 Query: 82 FRSTSGPVIAKAGDLAA-------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S +A DL + L R +LFIDE+HR + ++ L P +E+ L Sbjct: 82 F-SVVNAALAGIKDLRSEIESAIDRLNKFGKRTILFIDEVHRFNTAQQDALLPWVENGTL 140 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E P K LSR L Sbjct: 141 TLIGATTENPYFEVNKALLSRSRLF 165 >gi|42525535|ref|NP_970633.1| recombination factor protein RarA [Treponema denticola ATCC 35405] gi|41815546|gb|AAS10514.1| ATPase, AAA family [Treponema denticola ATCC 35405] Length = 441 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 10/119 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP +L+E+ GQ + A +A + L ++F GPPG GKTTLA+V+A Sbjct: 21 SRMRPISLDEYIGQEHIIGKGCLLRRAIQA--DRLSSLIFFGPPGTGKTTLARVIANTTK 78 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 NF S + V+A + +TN E+ + +LF+DE+HR + ++ L P +E+ Sbjct: 79 SNFLSLNA-VLAGVQQIREAVTNAEENKKLYNRKTILFVDEVHRWNKSQQDALLPWVEN 136 >gi|310640104|ref|YP_003944862.1| aaa atpase central domain protein [Paenibacillus polymyxa SC2] gi|309245054|gb|ADO54621.1| AAA ATPase central domain protein [Paenibacillus polymyxa SC2] Length = 442 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ LEEF GQ KV E + + + ++F GPPG+GKTTLA+++A + Sbjct: 21 VRPQNLEEFVGQKHLLEPGKVLREMIEN--DQVSSMIFWGPPGVGKTTLAKIIANQTQSK 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + D+ +++ E ++ +LFIDEIHR + ++ P +E + Sbjct: 79 FIDFSA-VTSGIKDIRSVMKEAEGNRQLGEKTLLFIDEIHRFNKAQQDAFLPYVEKGSI- 136 Query: 136 LMVGEGPSARSVKIN 150 +++G S ++N Sbjct: 137 ILIGATTENPSFEVN 151 >gi|313886300|ref|ZP_07820026.1| recombination factor protein RarA [Porphyromonas asaccharolytica PR426713P-I] gi|312924245|gb|EFR35028.1| recombination factor protein RarA [Porphyromonas asaccharolytica PR426713P-I] Length = 439 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 22/148 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TLEE+ GQ V A + L+V +E + ++ GPPG+GKTTLA+++++ + Sbjct: 12 MRPKTLEEYVGQSHLVGANAPLRVMLERGH-----IPSMILWGPPGVGKTTLARLLSQMM 66 Query: 79 GVNFRSTSGPVIAKAGDL-----------AALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 S S V + D+ + L + + R +LFIDEIHR S ++ L Sbjct: 67 QCRCYSLSA-VGSGVADVRKTLQEAKEAQSGLFSQHQGRPILFIDEIHRFSKSQQDSLLA 125 Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSR 153 A+E + L+ E PS + ++ LSR Sbjct: 126 AVEQGVVTLIGATTENPSFQVIRPLLSR 153 >gi|113954265|ref|YP_731698.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. CC9311] gi|113881616|gb|ABI46574.1| ATPase [Synechococcus sp. CC9311] Length = 733 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +LEEF GQ + ++ A A + + +++ GPPG+GKTTLA+++A Sbjct: 24 LRPTSLEEFAGQNAILAEGRLLRRAIAA--DRVGNLILHGPPGVGKTTLARIIATHTRAQ 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V+A DL + ++ R +LFIDE+HR + ++ L P +E+ L Sbjct: 82 FSSLNA-VLAGVKDLREQVDAAKERLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTL 140 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E P K +SR L Sbjct: 141 TLIGATTENPYFEVNKALVSRSRLF 165 >gi|148927772|ref|ZP_01811204.1| AAA ATPase, central domain protein [candidate division TM7 genomosp. GTL1] gi|147886884|gb|EDK72422.1| AAA ATPase, central domain protein [candidate division TM7 genomosp. GTL1] Length = 390 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 107/238 (44%), Gaps = 39/238 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL + GQ + ++ K + ++ GPPG GKTTLA+++A+E+ + Sbjct: 10 MRPQTLTDVIGQRQLLGENQILRHIVKNKQPV--SLILWGPPGSGKTTLARIIAKEVEAD 67 Query: 82 FRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V A D+ ++ NL+ R +LF+DEIHR + ++ P +E + Sbjct: 68 FIELSA-VTAGKADITQVVERARQNRNLKMRTILFVDEIHRFNKAQQDAFLPHVESGLIT 126 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L+ E PS + LSR +RV L+ PL ED+ TI++ Sbjct: 127 LIGATTENPSFEVITPLLSR-------SRV-LVLEPLDK-------------EDITTIIK 165 Query: 194 RGAKLTGLA--VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 + K VT +A +A S G RIA L D AE IT EI A Sbjct: 166 KSLKKLKATKRVTPKALEYLAELSSGDARIALGNLELALDMAE-----KITPEIVKKA 218 >gi|309810782|ref|ZP_07704588.1| recombination factor protein RarA [Dermacoccus sp. Ellin185] gi|308435262|gb|EFP59088.1| recombination factor protein RarA [Dermacoccus sp. Ellin185] Length = 457 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 71/152 (46%), Gaps = 14/152 (9%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTLEE GQ E S L+ IE A + +L+ GPPG GKTTLA + A Sbjct: 31 MRPRTLEEVRGQGEVLKPGSPLRRLIEGQAGAAGPMSAILW-GPPGTGKTTLAHLAANSA 89 Query: 79 GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A D+ L VLF+DEIHR S ++ L P +E+ Sbjct: 90 ERRFVELSA-ITAGVKDVRQAMEEAGRHLAMYGRSTVLFLDEIHRFSKAQQDALLPGVEN 148 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLIAATT 161 + L+ E PS + LSR L+ T+ Sbjct: 149 RTVILVAATTENPSFSVIAPLLSRSVLVTLTS 180 >gi|304384951|ref|ZP_07367297.1| replication-associated recombination protein A [Pediococcus acidilactici DSM 20284] gi|304329145|gb|EFL96365.1| replication-associated recombination protein A [Pediococcus acidilactici DSM 20284] Length = 439 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 8/152 (5%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 R+G L N + +RP L+EF GQ K+ E + + L ++F GPP Sbjct: 2 RQGSLFENKFNNTPLANRVRPSNLDEFVGQEHLLGPGKILREIIEN--DQLSSMIFWGPP 59 Query: 64 GLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 G+GKTTLAQ++A + F + S I K A L + + ++F+DEIHR + Sbjct: 60 GVGKTTLAQIIANKTNSKFLTFSAVDSSISKIKKIMQQAELDREIGQKTLVFVDEIHRFN 119 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 ++ P +E + +++G S ++N Sbjct: 120 KSQQDAFLPYVEKGSI-ILIGATTENPSFEVN 150 >gi|319405871|emb|CBI79503.1| ATPase, AAA family [Bartonella sp. AR 15-3] Length = 439 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 105/234 (44%), Gaps = 39/234 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L E GQ N + E +R A ++F GPPG GKTT+A+++A E Sbjct: 24 MRPRFLHEVVGQ-----NHLIGAEGFLSRMAASGSFSSMIFWGPPGTGKTTIARLLALET 78 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 F S + +L + R +LFIDEIHR + ++ MED Sbjct: 79 NFAFEQVSA-IFTGISELKKIFEVARARLMSGCQTLLFIDEIHRFNRAQQDSFLSFMEDG 137 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 + ++VG S ++N A +RV +LT D E L+ ++ Sbjct: 138 TI-ILVGATTENPSFELN------AALLSRVRILTFHTHDN------------ESLEILL 178 Query: 193 QRGAKLTGLAVT-DEAACEIAMR-SRGTPRIAGRL---LRRVRDFAEVAHAKTI 241 +R K+ G A+ D+ A EI +R S G R A L + RV EV +AKT+ Sbjct: 179 KRAEKMEGRALPLDDQAREILIRMSDGDARAALTLAEEIWRVAQSEEVFNAKTL 232 >gi|154148052|ref|YP_001406390.1| recombination factor protein RarA [Campylobacter hominis ATCC BAA-381] gi|153804061|gb|ABS51068.1| ATPase, AAA family [Campylobacter hominis ATCC BAA-381] Length = 392 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 50/223 (22%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP +++ +GQ E + + FI + E + + +F GP G GKTTLA+V+A EL F Sbjct: 8 RPDKIDDISGQHEIKAIFREFI-----KKEKIPNSIFFGPAGSGKTTLAKVLANELNYTF 62 Query: 83 RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + K D+ +L E+ + ++FIDEIHRLS +EIL +E+ Sbjct: 63 YELDASNL-KVEDIRKILNMHENSLYKPLIFIDEIHRLSKNQQEILLIPLEN-------- 113 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF----GIPIRLNFYEIE-----DLKT 190 + +I ATT NP +F GI R F+E + DL Sbjct: 114 ------------QKAVIIGATTE-----NP---QFVLTSGIRSRCMFFEFKALTNADLCE 153 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 + ++ K + EA + S G R LL DFA Sbjct: 154 LFEKVQKSLNFTIDKEAKNYLISSSGGDARAMFNLL----DFA 192 >gi|226311479|ref|YP_002771373.1| hypothetical protein BBR47_18920 [Brevibacillus brevis NBRC 100599] gi|226094427|dbj|BAH42869.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 452 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ + K+ A +A + + V+F GPPG GKTTLA+V+AR + Sbjct: 24 MRPQTIQDVIGQSHILAPGKLLRRAIEA--DQVSSVIFYGPPGTGKTTLAKVIARTTRTH 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDV-------LFIDEIHRLSIIVEEILYPAMED 131 F S V A D+ ++ ++R V LF+DEIHR + ++ L P +E+ Sbjct: 82 F-SELNAVTAGVADIRKVVDAAKERLVMDSQRTTLFVDEIHRFNKSQQDALLPYVEE 137 >gi|320106653|ref|YP_004182243.1| AAA ATPase central domain-containing protein [Terriglobus saanensis SP1PR4] gi|319925174|gb|ADV82249.1| AAA ATPase central domain protein [Terriglobus saanensis SP1PR4] Length = 445 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 16/153 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+EF GQ L++ +E + ++F GPPG GKTTLA++VAR Sbjct: 27 MRPRTLDEFAGQTHLVGKDGPLRLQLERDDPAS-----MIFWGPPGTGKTTLAKIVARMT 81 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +F S V++ ++ ++ + E R +LFIDEIHR + ++ P +E Sbjct: 82 QASFIEFSA-VMSGIKEIKQVMVDAEKAAAMGSRTILFIDEIHRFNKAQQDAFLPYVERG 140 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 L L +G S +IN + + T GL Sbjct: 141 TLRL-IGATTENPSFEINAALLSRCRVYTLRGL 172 >gi|224539375|ref|ZP_03679914.1| hypothetical protein BACCELL_04280 [Bacteroides cellulosilyticus DSM 14838] gi|224519010|gb|EEF88115.1| hypothetical protein BACCELL_04280 [Bacteroides cellulosilyticus DSM 14838] Length = 425 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIDRAKSNRFFSQGSPILFIDEIHRFSKSQQDSLLGAVEQ 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|94499677|ref|ZP_01306214.1| hypothetical protein RED65_01550 [Oceanobacter sp. RED65] gi|94428431|gb|EAT13404.1| hypothetical protein RED65_01550 [Oceanobacter sp. RED65] Length = 443 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 13/120 (10%) Query: 20 SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S RP+TL+++ GQ ++ L+ IE+ + L ++F GPPG+GKTTLA ++A Sbjct: 17 SRTRPQTLDDYAGQKHLLADGKPLRKVIESGR-----LHSMIFWGPPGVGKTTLAMILAN 71 Query: 77 ELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 + F S S + I A D A + + +LF+DE+HR + ++ P +ED Sbjct: 72 YVNAQFISVSAVMDGVKEIRAAVDKARMAQQQDRPSLLFVDEVHRFNKSQQDAFLPYVED 131 >gi|332829214|gb|EGK01878.1| hypothetical protein HMPREF9455_02026 [Dysgonomonas gadei ATCC BAA-286] Length = 422 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E+ GQ V + L+ IE+ + + L GPPG+GKTTLAQ++A L Sbjct: 9 LRPRTLDEYIGQKHLVGEGAILRKMIESGR-----IPSFLLWGPPGVGKTTLAQIIANTL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S + + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 DTPFYTLSA-INSGVKDVREVIEQAKKSQFFNTKSPILFIDEIHRFSKSQQDSLLNAVET 122 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS ++ LSR Sbjct: 123 GVITLIGATTENPSFEVIRPLLSR 146 >gi|325970918|ref|YP_004247109.1| ATPase AAA [Spirochaeta sp. Buddy] gi|324026156|gb|ADY12915.1| AAA ATPase central domain protein [Spirochaeta sp. Buddy] Length = 727 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E+ GQ ++ A +A + L V+F GPPG GKTTLA+V+A + Sbjct: 22 MRPRTLDEYIGQDAIIGAGRLLRRAIQA--DQLSSVIFYGPPGTGKTTLARVIANTTKRH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F ST V++ +L + R +LFIDE+HR + ++ L P +E+ Sbjct: 80 F-STLNAVLSGVKELRYEIEEARQRLELYNRGTILFIDEVHRWNKSQQDALLPWVEN 135 >gi|294784987|ref|ZP_06750275.1| ATPase, AAA family [Fusobacterium sp. 3_1_27] gi|294486701|gb|EFG34063.1| ATPase, AAA family [Fusobacterium sp. 3_1_27] Length = 407 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 41/230 (17%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L +N + LRP++LE+F GQ + V L + +F GPPG Sbjct: 2 NLFQKNYKNVEPLAYKLRPKSLEDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGC 59 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLS 118 GK++L ++++ L NF + A D+ ++ N+E R +LF+DEIHR + Sbjct: 60 GKSSLGEIISNTLDCNFEKLNATT-ASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIP 177 ++ L ED L TLI ATT NP + + Sbjct: 119 KNQQDALLSYTEDGTL--------------------TLIGATTE-----NPYYNINNALL 153 Query: 178 IRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 R+ +E ED+ ++ +G ++++D+ I S+G RIA Sbjct: 154 SRVMVFEFKALTNEDILKLINKGLNFLNISMSDKIKEIIVDISQGDSRIA 203 >gi|170726827|ref|YP_001760853.1| recombination factor protein RarA [Shewanella woodyi ATCC 51908] gi|169812174|gb|ACA86758.1| AAA ATPase central domain protein [Shewanella woodyi ATCC 51908] Length = 443 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 35/262 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ L+ +EA +A + ++F GPPG GKTTLA++VA Sbjct: 19 MRPEELSQYIGQSHLLGEGKPLRKALEAGRAHS-----MMFWGPPGTGKTTLAELVANYA 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + ++ + + ++ R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VTSGVKEIRTAIEHAKNVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + + +G S +IN + + RV L+ D + + ++E Sbjct: 133 GTV-IFIGATTENPSFEIN----NALLSRARVYLIKKLTNDEIVLIVNQALLDVE----- 182 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE-IADAAL 250 RG L + D A ++A G R A L+ + D VA ++ T E I + A Sbjct: 183 --RGLGKRKLTIPDAVANKLANVCDGDARKALNLIELMSDM--VADGESFTEEMIVEVAG 238 Query: 251 LRLAIDKMGFDQLDLRYLTMIA 272 +LA GFD+ +Y +I+ Sbjct: 239 QQLA----GFDKNGDQYYDLIS 256 >gi|322435979|ref|YP_004218191.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX9] gi|321163706|gb|ADW69411.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX9] Length = 445 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 29/255 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L+E+ GQ + L++ IE + ++F GPPG+GKTTLA+++A++ Sbjct: 25 MRPRDLDEYAGQQHLLGVGKPLRLAIERDDPAS-----MIFWGPPGVGKTTLAKIIAQKT 79 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +F S V++ ++ ++ E R +LF+DEIHR + ++ P +E Sbjct: 80 QASFIEFSA-VLSGIKEIKNVMVEAEKASQFGSRTILFVDEIHRFNKAQQDAFLPYVERG 138 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 + L +G S +IN + + + RV L +D +R + E Sbjct: 139 TIRL-IGATTENPSFEINAA----LLSRCRVYTLQPLSEDEVIALLRRALADSE------ 187 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 G +G+ ++A IA + G R A L A TIT+ +A A+ R Sbjct: 188 -YGLGESGVEADEDALASIAAYASGDARTALNALEVAAQLATGRGETTITKPLAAEAMQR 246 Query: 253 --LAIDKMGFDQLDL 265 L DK G D+ Sbjct: 247 RMLLYDKKGEQHYDI 261 >gi|329965400|ref|ZP_08302324.1| ATPase, AAA family [Bacteroides fluxus YIT 12057] gi|328522192|gb|EGF49306.1| ATPase, AAA family [Bacteroides fluxus YIT 12057] Length = 423 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 DTPFYTLSA-VTSGVKDVRDVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEQ 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|325847794|ref|ZP_08170016.1| ATPase, AAA family [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480812|gb|EGC83865.1| ATPase, AAA family [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 443 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 17/153 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+F GQ K+ K+ + + +F GPPG+GKTTLA+++++ + Sbjct: 22 MRPENIEDFLGQDHLLGEGKIIRRMIKS--DRIYSSIFYGPPGVGKTTLAKIISKSTNMA 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V + DL + +D + +LFIDEIHR + ++ L P +ED + Sbjct: 80 FEKVSA-VASGISDLKKKIEIAKDNLKYENKKTILFIDEIHRFNKSQQDYLLPFVEDSTI 138 Query: 135 DLMVG---EGPSARSVKINLSR---FTLIAATT 161 +++G E P K +SR F L A T Sbjct: 139 -ILIGATTENPYFEVNKALISRMYVFELKAHTN 170 >gi|318040549|ref|ZP_07972505.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. CB0101] Length = 745 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L++F GQ E ++ A A + + +++ GPPG+GKTTLA+++A + Sbjct: 37 LRPRSLDDFQGQEEILGPGRLLRRAIHA--DRVGNLILYGPPGVGKTTLARIIAASTRAH 94 Query: 82 FRSTSGPVIAKAGDLAALLTN----LED---RDVLFIDEIHRLSIIVEEILYPAMED 131 F S + V+A DL + + LE R LFIDE+HR + ++ L P +E+ Sbjct: 95 FSSLNA-VLAGVKDLRSEVDEARRRLEQHGLRSFLFIDEVHRFNSAQQDALLPWVEN 150 >gi|148241495|ref|YP_001226652.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. RCC307] gi|147849805|emb|CAK27299.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Synechococcus sp. RCC307] Length = 719 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 10/123 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L+EF GQ ++ A A + L ++ GPPG GKTTLA+++A + Sbjct: 25 LRPRSLDEFIGQDAILGPGRLLRRAIAA--DRLGSLILHGPPGTGKTTLARIIANTTRCH 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V+A DL A + ++ R +LFIDE+HR + ++ L P +E+ + Sbjct: 83 FSSLNA-VLAGIKDLRAEVEQAQERLGRHGLRTLLFIDEVHRFNTSQQDALLPWVENGTV 141 Query: 135 DLM 137 L+ Sbjct: 142 TLI 144 >gi|308270409|emb|CBX27021.1| Replication-associated recombination protein A [uncultured Desulfobacterium sp.] Length = 456 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 12/149 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L EF GQ + I A + + +L+ GPPG GKTTLA+++ARE Sbjct: 27 MRPRNLNEFAGQEHVVAE-GTLIRHAFEKDQVFSMILW-GPPGCGKTTLARIIARETSSY 84 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V++ ++ A++ ++ R +LF+DEIHR + ++ +E + Sbjct: 85 FMHFSA-VLSGVKEIRAVIEEAKNQLKLFRKRSILFVDEIHRFNKAQQDAFLHHVESGLI 143 Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATT 161 L+ E PS + LSR +I T Sbjct: 144 TLIGATTENPSFEVISPLLSRCRVITLKT 172 >gi|242211508|ref|XP_002471592.1| predicted protein [Postia placenta Mad-698-R] gi|220729364|gb|EED83240.1| predicted protein [Postia placenta Mad-698-R] Length = 380 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 13/143 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L+EF GQ + + + A ++F GPPG GKTTLA+++A+ Sbjct: 11 LRPSSLDEFVGQPHLTGPGSLLMHLLGSGATG--SMIFWGPPGCGKTTLARLLAKRTDAI 68 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F+ S V+ +A + AL R +LF+DE+HR + ++I P +E Sbjct: 69 FKELSATDSGISDVRAVVEEAKGVLALTGRQAVRTILFLDEVHRFNKAQQDIFLPFLEQG 128 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L L+ E PS + +SR Sbjct: 129 HLQLIGATTENPSFKLTGALISR 151 >gi|255008670|ref|ZP_05280796.1| recombination factor protein RarA [Bacteroides fragilis 3_1_12] gi|313146404|ref|ZP_07808597.1| recombination factor protein RarA [Bacteroides fragilis 3_1_12] gi|313135171|gb|EFR52531.1| recombination factor protein RarA [Bacteroides fragilis 3_1_12] Length = 423 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVEH 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|296162943|ref|ZP_06845721.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1] gi|295886797|gb|EFG66637.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1] Length = 437 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 16/129 (12%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP+TL+EF GQ + L++ EA K L + GPPG+GKTTL ++ A Sbjct: 16 LLRPKTLDEFVGQRHLLGPGKPLRLAFEAGK-----LHSFILWGPPGVGKTTLGRLAASA 70 Query: 78 LGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + S V+A D+ A L N VLF+DEIHR + ++ L P +E Sbjct: 71 TDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVE 129 Query: 131 DFQLDLMVG 139 L L+ G Sbjct: 130 SGLLTLVGG 138 >gi|319937217|ref|ZP_08011624.1| ATPase [Coprobacillus sp. 29_1] gi|319807583|gb|EFW04176.1| ATPase [Coprobacillus sp. 29_1] Length = 442 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 11/149 (7%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 L +N SQE S LRP+TL ++ GQ K+ + + + + ++F GPPG+GK Sbjct: 6 LFQNQSQEPL-ASRLRPQTLSDYVGQKHLIGQGKILWQLIEH--DQISSMIFWGPPGVGK 62 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIV 121 TTLA+++A F S V + D+ A++ ++ R ++F+DEIHR + Sbjct: 63 TTLARIIANCTQSEFIDFSA-VTSGIKDIKAVMKQAQEKQMMGIRTIVFVDEIHRFNKAQ 121 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKIN 150 ++ P +E + +++G S +IN Sbjct: 122 QDAFLPYVEQGSI-ILIGATTENPSFEIN 149 >gi|221215313|ref|ZP_03588278.1| ATPase, AAA family [Burkholderia multivorans CGD1] gi|221164745|gb|EED97226.1| ATPase, AAA family [Burkholderia multivorans CGD1] Length = 437 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 16/129 (12%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP+TL+EF GQ + L++ EA K L + GPPG+GKTTL ++ A Sbjct: 16 LLRPKTLDEFVGQRHLLGPGKPLRLAFEAGK-----LHSFILWGPPGVGKTTLGRLAASA 70 Query: 78 LGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + S V+A D+ A L N VLF+DEIHR + ++ L P +E Sbjct: 71 TDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVE 129 Query: 131 DFQLDLMVG 139 L L+ G Sbjct: 130 SGLLTLVGG 138 >gi|134095226|ref|YP_001100301.1| recombination factor protein RarA [Herminiimonas arsenicoxydans] gi|133739129|emb|CAL62178.1| ATPase, AAA family protein [Herminiimonas arsenicoxydans] Length = 437 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 16/129 (12%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP+TL+EF GQ + L++ EA K L + GPPG+GKTTL ++ A Sbjct: 16 LLRPKTLDEFVGQRHLLGPGKPLRLAFEAGK-----LHSFILWGPPGVGKTTLGRLAASA 70 Query: 78 LGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + S V+A D+ A L N VLF+DEIHR + ++ L P +E Sbjct: 71 TDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVE 129 Query: 131 DFQLDLMVG 139 L L+ G Sbjct: 130 SGLLTLVGG 138 >gi|15889208|ref|NP_354889.1| recombination factor protein RarA [Agrobacterium tumefaciens str. C58] gi|15157031|gb|AAK87674.1| ATPase, AAA family protein [Agrobacterium tumefaciens str. C58] Length = 438 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E +GQ L+ I++ +L ++F GPPG GKTT+A++++ E Sbjct: 24 LRPKTLSEVSGQPHLTGEEGVLRRMIDSG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + DL + R +LF+DEIHR + ++ P MED Sbjct: 79 GLAFEQISA-IFSGVADLKKVFEAARTRRMNGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 138 TI-ILVGATTENPSFELN 154 >gi|302391510|ref|YP_003827330.1| recombination protein MgsA [Acetohalobium arabaticum DSM 5501] gi|302203587|gb|ADL12265.1| Recombination protein MgsA [Acetohalobium arabaticum DSM 5501] Length = 439 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 15/130 (11%) Query: 13 SQEDADISL-----LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 SQE+ D S +RP TL++F GQ E ++ A KA + + ++ GPPG GK Sbjct: 8 SQEELDASAPLADRMRPTTLDDFFGQEEIVGPDRLLRRAIKA--DRIQSLILYGPPGTGK 65 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSII 120 TTLA ++A F + V + D+ ++ ++R +LFIDEIHR + Sbjct: 66 TTLAMIIANTTSSEFERLNA-VTSGIKDIREIIKQAKERRRMYQTKTILFIDEIHRFNKS 124 Query: 121 VEEILYPAME 130 ++ L PA+E Sbjct: 125 QQDALLPAVE 134 >gi|107102094|ref|ZP_01366012.1| hypothetical protein PaerPA_01003143 [Pseudomonas aeruginosa PACS2] Length = 425 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 16/129 (12%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP+TL+EF GQ + L++ EA K L + GPPG+GKTTL ++ A Sbjct: 4 LLRPKTLDEFVGQRHLLGPGKPLRLAFEAGK-----LHSFILWGPPGVGKTTLGRLAASA 58 Query: 78 LGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + S V+A D+ A L N VLF+DEIHR + ++ L P +E Sbjct: 59 TDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVE 117 Query: 131 DFQLDLMVG 139 L L+ G Sbjct: 118 SGLLTLVGG 126 >gi|265763268|ref|ZP_06091836.1| recombination factor protein RarA [Bacteroides sp. 2_1_16] gi|263255876|gb|EEZ27222.1| recombination factor protein RarA [Bacteroides sp. 2_1_16] Length = 423 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVEH 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|150865091|ref|XP_001384164.2| replication factor ATPase [Scheffersomyces stipitis CBS 6054] gi|149386347|gb|ABN66135.2| replication factor ATPase [Scheffersomyces stipitis CBS 6054] Length = 786 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 29/130 (22%) Query: 22 LRPRTLEEFTGQVE-------ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 +RPR+L+E+ GQ A +N R L +L GPPG+GKTT+A ++ Sbjct: 27 IRPRSLDEYIGQKHLIDPDNGAITNF--------MRLRYLPSMLLYGPPGVGKTTMASII 78 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNL--EDRD-----------VLFIDEIHRLSIIV 121 A E G F S A DL L T + E+R V+FIDEIHR ++ Sbjct: 79 AEECGYVFVELSATA-ATVADLRDLSTTIMAENRKRASRGEEELKVVVFIDEIHRFTVSQ 137 Query: 122 EEILYPAMED 131 ++ L P +E+ Sbjct: 138 QDFLLPYVEE 147 >gi|78485111|ref|YP_391036.1| recombination factor protein RarA [Thiomicrospira crunogena XCL-2] gi|78363397|gb|ABB41362.1| Recombination protein MgsA [Thiomicrospira crunogena XCL-2] Length = 453 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 43/231 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL++F GQ L E+ + + ++F GPPG GKTTLA+++A++ Sbjct: 13 LRPQTLDDFVGQTHLLGKGRALSKMFESGR-----MHSMIFWGPPGTGKTTLARLIAKQS 67 Query: 79 GVNFRSTSGPV-----IAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 + F + S + + A + A L + +LF+DE+HR + ++ P +ED Sbjct: 68 DLQFLNLSAVLDGVKEVRAAVEQAKLHRQQFQQGSLLFVDEVHRFNKAQQDAFLPFVED- 126 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKT 190 F I ATT L N L R + + L + +DL+ Sbjct: 127 -------------------GTFIFIGATTENPSFELNNALLSRARVYV-LRSLDEDDLQQ 166 Query: 191 IVQRGAKLTG------LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235 ++ R +L L + +A + S G R LL + DFAEV Sbjct: 167 VLNRATELLNQELSQPLRIEPDAQAALIQFSDGDARRLLNLLEQAVDFAEV 217 >gi|304382033|ref|ZP_07364585.1| replication-associated recombination protein A [Prevotella marshii DSM 16973] gi|304336787|gb|EFM03011.1| replication-associated recombination protein A [Prevotella marshii DSM 16973] Length = 430 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TLE++ GQ L+ IEA + + + GPPG+GKTTLAQ++A ++ Sbjct: 9 MRPSTLEDYIGQKHLVGEGGVLRRMIEAKRVSS-----FILWGPPGVGKTTLAQIIAHQM 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 V F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 EVPFYTLSA-VTSGVKDVREVIERAKSGRFFSQGSPILFIDEIHRFSKSQQDSLLGAVEQ 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|253566840|ref|ZP_04844292.1| recombination factor protein RarA [Bacteroides sp. 3_2_5] gi|251944403|gb|EES84892.1| recombination factor protein RarA [Bacteroides sp. 3_2_5] gi|301162894|emb|CBW22441.1| putative AAA family ATPase protein [Bacteroides fragilis 638R] Length = 423 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVEH 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|254442732|ref|ZP_05056208.1| ATPase, AAA family protein [Verrucomicrobiae bacterium DG1235] gi|198257040|gb|EDY81348.1| ATPase, AAA family protein [Verrucomicrobiae bacterium DG1235] Length = 496 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 5/112 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L E GQ + K+ +A +LF GPPG GKT++A+ +A E Sbjct: 80 LRPRSLSEVVGQEHILAPGKLLPRLVEANT--FGSLLFYGPPGCGKTSMAEAIAGETKSR 137 Query: 82 FRSTSGPV--IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130 F + + +A+ ++ + +ED+D VLFIDEIHR + +++L P +E Sbjct: 138 FVRINAVMSNVAELREILGIARRMEDKDTVLFIDEIHRFNKSQQDLLLPDVE 189 >gi|171911243|ref|ZP_02926713.1| ATPase, AAA family protein [Verrucomicrobium spinosum DSM 4136] Length = 466 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 12/117 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+++E+ GQ K+ A A + ++F GPPG+GKTTLA +++ E Sbjct: 43 MRPRSMDEYVGQEHILGEGKLLRRAIMA--DRFSSLIFYGPPGVGKTTLATIISNETHSR 100 Query: 82 FRSTSG--------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + SG ++A A + L + VLF+DEIHR + +++L P +E Sbjct: 101 FVTLSGVESNVAEIRMVADAAEKEERLNGIG--TVLFVDEIHRFNKSQQDVLLPHLE 155 >gi|317486968|ref|ZP_07945778.1| ATPase [Bilophila wadsworthia 3_1_6] gi|316921843|gb|EFV43119.1| ATPase [Bilophila wadsworthia 3_1_6] Length = 407 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 11/138 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L F GQ L +E + L +L GPPG GK+TLA ++AR G N Sbjct: 11 LRPSELALFVGQSHLAERLTTLLEGPR-----LPSLLLFGPPGCGKSTLALLLARARGGN 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 S P +AG L L L D+L +DE+HR S ++ P +E L ++ Sbjct: 66 VLRLSAP---EAG-LQQLRRQLTGVDILVLDELHRFSKAQQDFFLPLLESGDLTMIATTT 121 Query: 140 EGPSARSVKINLSRFTLI 157 E PS + LSR ++ Sbjct: 122 ENPSFSVTRQLLSRLHVL 139 >gi|60681434|ref|YP_211578.1| recombination factor protein RarA [Bacteroides fragilis NCTC 9343] gi|60492868|emb|CAH07643.1| putative AAA family ATPase protein [Bacteroides fragilis NCTC 9343] Length = 423 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVEH 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|53713173|ref|YP_099165.1| recombination factor protein RarA [Bacteroides fragilis YCH46] gi|52216038|dbj|BAD48631.1| putative AAA family ATPase [Bacteroides fragilis YCH46] Length = 423 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVEH 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|221485041|gb|EEE23331.1| werner helicase interacting protein, putative [Toxoplasma gondii GT1] Length = 586 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 101/246 (41%), Gaps = 50/246 (20%) Query: 22 LRPRTLEEFTGQVEAC-----SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 LRP +LEE+ GQ C +++ +EA L ++ GPPG GKTT+A + R Sbjct: 94 LRPASLEEYVGQ-RGCIQGGRGSIRELLEAGH-----LPSLILWGPPGCGKTTIALLAGR 147 Query: 77 ELGVNFRSTS--GPVIAKAGDLAA--------------LLTNLEDRDVLFIDEIHRLSII 120 +G + S PV K + L + + VLF+DEIHR + Sbjct: 148 SVGKKNSALSLPPPVFKKMSAVTCGVNDVRKVVQEALTLRATTKQKTVLFLDEIHRFNKA 207 Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 ++ L P +E + L+ E PS + LSR RV L PL + Sbjct: 208 QQDALLPHVETGTITLIGATTENPSFEVNRALLSR-------CRVCKL-EPLTE------ 253 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 EDL TI+QR AK + +T+ A I + G R A +L A+ Sbjct: 254 -------EDLTTILQRAAKEENVTITEAAVRVICRLADGDARRALNMLENAIHHERTANE 306 Query: 239 KTITRE 244 T + Sbjct: 307 NKATND 312 >gi|169334179|ref|ZP_02861372.1| hypothetical protein ANASTE_00575 [Anaerofustis stercorihominis DSM 17244] gi|169258896|gb|EDS72862.1| hypothetical protein ANASTE_00575 [Anaerofustis stercorihominis DSM 17244] Length = 482 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 40/217 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+EF GQ K+ +A + + ++ GP G GKTTLA+++A + Sbjct: 66 MRPENLDEFFGQEHIVGEGKLLNRMIEA--DRISSIILFGPAGCGKTTLARIIANKTSSY 123 Query: 82 FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V D+ ++ N + + +LFIDEIHR + ++ L P++ED Sbjct: 124 FYSLNA-VTCGVKDVREIIENAKANLGMERKKSILFIDEIHRFNKSQQDALLPSVED--- 179 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTIV 192 LI ATT + +PL R + +L E ED++ I+ Sbjct: 180 -----------------GTIILIGATTENPFFEINSPLISRSTL-FKLKKIEKEDVRKII 221 Query: 193 -------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 +RG + + +EA +++ S G R++ Sbjct: 222 ENTLKNKERGLGNYDIQIDEEAIDYLSLMSSGDARVS 258 >gi|325123959|gb|ADY83482.1| putative ATPase [Acinetobacter calcoaceticus PHEA-2] Length = 421 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VIA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR +TL + + LL N LQ DRF ++ Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQSDRF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 + IE+ ++Q A Sbjct: 176 YIHIEEYDALIQFAA 190 >gi|315608969|ref|ZP_07883941.1| AAA family ATPase [Prevotella buccae ATCC 33574] gi|315249349|gb|EFU29366.1| AAA family ATPase [Prevotella buccae ATCC 33574] Length = 428 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 22/149 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+++ GQ V + L+ IE + + + GPPG+GKTTLAQ++A L Sbjct: 8 MRPRTLDDYVGQQHLVSPGAVLRRMIEGGR-----ISSFILWGPPGVGKTTLAQIIANRL 62 Query: 79 GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F + TSG VI +AG +L +LFIDEIHR S ++ L A+ Sbjct: 63 KTPFYTLSAVTSGVKDVREVIERAGR-NRFFDSLS--PILFIDEIHRFSKSQQDSLLGAV 119 Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTL 156 E + L+ E PS ++ LSR L Sbjct: 120 EKGVVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|282858602|ref|ZP_06267764.1| recombination factor protein RarA [Prevotella bivia JCVIHMP010] gi|282588606|gb|EFB93749.1| recombination factor protein RarA [Prevotella bivia JCVIHMP010] Length = 423 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 22/149 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+++ GQ V + L+ IE+ + + GPPG+GKTTLAQ++A +L Sbjct: 8 MRPRTLDQYIGQEHLVGKDAVLRRMIESGH-----ISSFILWGPPGVGKTTLAQIIAHKL 62 Query: 79 GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F + TSG VI KA N +LFIDEIHR S ++ L A+ Sbjct: 63 ETPFYTLSAVTSGVKDVREVIEKAKSNRFFSAN---SPILFIDEIHRFSKSQQDSLLGAV 119 Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTL 156 E + L+ E PS ++ LSR L Sbjct: 120 EKGIVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|297620403|ref|YP_003708540.1| recombination factor RarA [Waddlia chondrophila WSU 86-1044] gi|297375704|gb|ADI37534.1| recombination factor RarA [Waddlia chondrophila WSU 86-1044] Length = 418 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE GQ + FI +A + L +L+ GPPG GKT++A++ A+ ++ Sbjct: 8 LRPKKLEEIWGQDHLLGD-GAFIPSAIRSQKPLSMILW-GPPGCGKTSIARLYAQAFAMD 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 FRS + + + DL ++ ++ VLF+DEIHR + ++ P +ED + Sbjct: 66 FRSLNA-IFSGVADLKKIVHEVKQTPLFSQNCVLFVDEIHRFNKAQQDAFLPFIEDGTIV 124 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 125 LIGATAENPS 134 >gi|34762825|ref|ZP_00143811.1| ATPase associated with chromosome architecture/replication [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887527|gb|EAA24611.1| ATPase associated with chromosome architecture/replication [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 407 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 41/214 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++LE+F GQ + V L + +F GPPG GK++L ++++ L N Sbjct: 18 LRPKSLEDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGCGKSSLGEIISNTLDCN 75 Query: 82 FRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + A D+ ++ N+E R +LF+DEIHR + ++ L ED L Sbjct: 76 FEKLNATT-ASVSDIRNVVETARRNIELYNKRTILFLDEIHRFNKNQQDALLSYTEDGTL 134 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDL 188 TLI ATT NP + + R+ +E ED+ Sbjct: 135 --------------------TLIGATTE-----NPYYNINNALLSRVMVFEFKALTNEDI 169 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 ++ +G ++++D+ I S+G RIA Sbjct: 170 LKLINKGLNFLNISMSDKIKEIIVDISQGDSRIA 203 >gi|330723792|gb|AEC46162.1| recombination factor protein RarA [Mycoplasma hyorhinis MCLD] Length = 405 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 9/109 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP LEEF GQ + L+ I+ + +F GP G GKTTLA ++A+ L + Sbjct: 6 LRPENLEEFVGQPHLRTLLEKLIQTQDKSS-----FIFYGPSGTGKTTLAILLAKNLNLK 60 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + + K+ LL ++D V+ IDE+HRL+ ++IL +E Sbjct: 61 FDIFNATIENKSD----LLQKIKDNQVVIIDEVHRLNKDKQDILLSHLE 105 >gi|126728193|ref|ZP_01744009.1| ATPase, AAA family protein [Sagittula stellata E-37] gi|126711158|gb|EBA10208.1| ATPase, AAA family protein [Sagittula stellata E-37] Length = 436 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ + S L V + A +L ++F GPPG+GKTT+A+++A Sbjct: 23 LRPQTLAEVIGQEQVLGPESPLGVMLAAG-----SLGSIVFWGPPGVGKTTIARLLADAT 77 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A L +LF+DEIHR + ++ P MED Sbjct: 78 DLHFVQISAIFTGVPELRKVFEAAKLRRQQGHGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137 Query: 134 LDLMVG---EGPSARSVKINLSR 153 + L+VG E PS + LSR Sbjct: 138 I-LLVGATTENPSFELNRALLSR 159 >gi|26990707|ref|NP_746132.1| recombination factor protein RarA [Pseudomonas putida KT2440] gi|24985700|gb|AAN69596.1|AE016593_4 ATPase, AAA family [Pseudomonas putida KT2440] gi|313498109|gb|ADR59475.1| Recombination factor protein RarA [Pseudomonas putida BIRD-1] Length = 441 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRPSSLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQFCDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 L +G S ++N Sbjct: 134 LFIGATTENPSFELN 148 >gi|148547066|ref|YP_001267168.1| recombination factor protein RarA [Pseudomonas putida F1] gi|148511124|gb|ABQ77984.1| Recombination protein MgsA [Pseudomonas putida F1] Length = 441 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRPSSLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQFCDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 L +G S ++N Sbjct: 134 LFIGATTENPSFELN 148 >gi|330794089|ref|XP_003285113.1| hypothetical protein DICPUDRAFT_148953 [Dictyostelium purpureum] gi|325084939|gb|EGC38356.1| hypothetical protein DICPUDRAFT_148953 [Dictyostelium purpureum] Length = 743 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 15/138 (10%) Query: 21 LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 ++RP +F GQ E N L +F ++E+ ++ GPPG GKTTLA+++ ++ Sbjct: 263 IMRPTEFLDFIGQEELMHNSIILNLF------KSESPPSIILYGPPGCGKTTLAKIITKK 316 Query: 78 LGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 N+ S + +A D A + +LFIDEIHR + +++L PA+E Sbjct: 317 SNANYLELSAVGSGVKDVKEAIDKAKNSLMFGKKTILFIDEIHRYNKSQQDVLLPAIESG 376 Query: 133 QLDLMVGEGPSARSVKIN 150 + +++G S +IN Sbjct: 377 TI-ILIGATTENPSFEIN 393 >gi|294141065|ref|YP_003557043.1| ATPase [Shewanella violacea DSS12] gi|293327534|dbj|BAJ02265.1| ATPase, AAA family [Shewanella violacea DSS12] Length = 443 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 35/262 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP LE++ GQ L+ +EA +A + ++F GPPG GKTTLA++VA Sbjct: 19 MRPEVLEQYIGQSHLLGEGKPLRKALEAGRAHS-----MVFWGPPGTGKTTLAELVAHYA 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + ++ A + + ++ R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VTSGVKEIRAAIEHAQNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + + +G S +IN + + RV L+ D +R I+D Sbjct: 133 GTV-IFIGATTENPSFEIN----NALLSRARVYLIKRLTNDEIIQIVRQAL--IDD---- 181 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE-IADAAL 250 +RG L + DE A ++A G R A L+ + D +A ++ T + I + A Sbjct: 182 -ERGLGKRQLTIPDEVAEKLANVCDGDARKALNLIELMSDM--IADGESFTEQMIIEVAG 238 Query: 251 LRLAIDKMGFDQLDLRYLTMIA 272 +LA GFD+ ++ +I+ Sbjct: 239 QQLA----GFDKNGDQFYDLIS 256 >gi|227873104|ref|ZP_03991398.1| crossover junction endodeoxyribonuclease ATPase [Oribacterium sinus F0268] gi|227841085|gb|EEJ51421.1| crossover junction endodeoxyribonuclease ATPase [Oribacterium sinus F0268] Length = 421 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 8/116 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+LEE GQ K+ + R++ L +LF GPPG GKT+LA+V+A + Sbjct: 22 MRPRSLEEVVGQEHILGKDKLL--SRLIRSDQLHSLLFFGPPGTGKTSLAKVIANSSKAD 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + K A+ E+ + +LF+DEIHR + ++ L P +E+ Sbjct: 80 FIPINATTAGKKDMEEAVARAKENMGGYGRKTILFVDEIHRFNKAQQDYLLPHVEE 135 >gi|319651670|ref|ZP_08005797.1| ATPase [Bacillus sp. 2_A_57_CT2] gi|317396737|gb|EFV77448.1| ATPase [Bacillus sp. 2_A_57_CT2] Length = 421 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 41/213 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E GQ S K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPRTIDEIIGQEHLVSEGKIIYRMVQAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + + +L +DE+HRL ++ L P +E+ Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGKVILLLDEVHRLDKGKQDFLLPYLEN--------- 118 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQR 194 TLI ATT +NP I R +E+ +D+K + R Sbjct: 119 -----------GSITLIGATT-----SNPYHAINPAIRSRCQIFELKPLSADDIKKALTR 162 Query: 195 G--AKLTGLA-----VTDEAACEIAMRSRGTPR 220 K GL VTD+A +A S G R Sbjct: 163 ALLDKERGLGNRQTEVTDDALTHLATASNGDVR 195 >gi|254485674|ref|ZP_05098879.1| ATPase, AAA family [Roseobacter sp. GAI101] gi|214042543|gb|EEB83181.1| ATPase, AAA family [Roseobacter sp. GAI101] Length = 435 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ + L V +++ +L ++F GPPG+GKTT+A+++A E Sbjct: 23 LRPKTLAEVIGQAQVLGPDGPLTVMLQSG-----SLGSLIFWGPPGVGKTTIARLLADET 77 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 78 DLHFVQISAIFSGVPELRKVFEAAKIRRQNGRGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 138 I-LLVGATTENPSFELN 153 >gi|332299790|ref|YP_004441711.1| AAA ATPase central domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332176853|gb|AEE12543.1| AAA ATPase central domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 439 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 22/148 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TLEE+ GQ V A + L+V +E + ++ GPPG+GKTTLA+++++ + Sbjct: 12 MRPKTLEEYVGQSHLVGANAPLRVMLERGH-----IPSMILWGPPGVGKTTLARLLSQMM 66 Query: 79 GVNFRSTSGPVIAKAGDL-----------AALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 S S V + D+ + L + + R +LFIDEIHR S ++ L Sbjct: 67 QCRCYSLSA-VGSGVADVRKTLQEAKEAQSGLFSQHQGRPILFIDEIHRFSKSQQDSLLA 125 Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSR 153 A+E + L+ E PS + + LSR Sbjct: 126 AVEQGVVTLIGATTENPSFQVIHPLLSR 153 >gi|294786969|ref|ZP_06752223.1| ATPase, AAA family [Parascardovia denticolens F0305] gi|315226608|ref|ZP_07868396.1| replication-associated recombination protein A [Parascardovia denticolens DSM 10105] gi|294485802|gb|EFG33436.1| ATPase, AAA family [Parascardovia denticolens F0305] gi|315120740|gb|EFT83872.1| replication-associated recombination protein A [Parascardovia denticolens DSM 10105] Length = 487 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 13/148 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L++ GQ + S L+ A A ++ GPPG+GKTTLA + A E Sbjct: 24 MRPTSLDQVVGQGRVLGEGSPLRRLASAPSHSRTAPSSIILFGPPGVGKTTLAYIAAHES 83 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 G F S VI +L +L R VLFIDE+HR S ++ L PA+E+ Sbjct: 84 GRAFEELSA-VIDGVKELREVLARSRQRLVAEGKETVLFIDEVHRFSKSQQDALLPAVEN 142 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLI 157 + + E PS + LSR ++ Sbjct: 143 RDVTFIGATTENPSFSIISPLLSRSVVV 170 >gi|192360498|ref|YP_001983014.1| ATPase, AAA family domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686663|gb|ACE84341.1| ATPase, AAA family domain protein [Cellvibrio japonicus Ueda107] Length = 447 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 38/273 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+++ GQ + K EA R + L ++ GPPG+GKT+LA++ A + Sbjct: 19 MRPRNLDDYIGQEHLLAAGKPLREAI-TRGQ-LHSMILWGPPGVGKTSLAKLFAEQANAR 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V++ ++ A + E + +LF+DE+HR + ++ P +ED Sbjct: 77 FETLSA-VMSGVKEIRAAVAAAEQERISTRRKTILFVDEVHRFNKSQQDAFLPYVEDGTF 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + +G S ++N + + RV +L LQ I + + T +R Sbjct: 136 -IFIGATTENPSFELN----NALLSRCRVYVLRG-LQPEQLIQV------MRQALTDAER 183 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 G +GL V DE +A + G R + LL D A+ + E D LA Sbjct: 184 GLGKSGLEVDDEVLNSLAQAADGDARKSLNLLEIAADLAQEQEGVRVINE--DVLREVLA 241 Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287 D FD+ GG + E ISA Sbjct: 242 ADVRRFDK--------------GGDIFYEQISA 260 >gi|146298174|ref|YP_001192765.1| recombination factor protein RarA [Flavobacterium johnsoniae UW101] gi|146152592|gb|ABQ03446.1| AAA ATPase, central domain protein [Flavobacterium johnsoniae UW101] Length = 425 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 69/144 (47%), Gaps = 17/144 (11%) Query: 22 LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RPRTLE++ Q N + + +K +L +F GPPG GKTTLAQ++A+E Sbjct: 9 IRPRTLEDYISQSHLVGPNGSLTQQISKGIIPSL---IFWGPPGTGKTTLAQIIAQESKR 65 Query: 81 NFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S VI KA L T +LFIDEIHR S ++ L A+E Sbjct: 66 PFYELSAINSGVKDIRDVIEKAKQSGGLFT--AKNPILFIDEIHRFSKSQQDSLLAAVEK 123 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 124 GWITLIGATTENPSFEVIPALLSR 147 >gi|260432475|ref|ZP_05786446.1| recombination factor protein RarA [Silicibacter lacuscaerulensis ITI-1157] gi|260416303|gb|EEX09562.1| recombination factor protein RarA [Silicibacter lacuscaerulensis ITI-1157] Length = 437 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 32/201 (15%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ L + GQ + + L V + + +L ++F GPPG+GKTT+A+++A+E Sbjct: 24 LRPQALSDVIGQQQVLGPEAPLGVMLASG-----SLSSLIFWGPPGVGKTTIARLLAKET 78 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A L +LF+DEIHR + ++ P MED Sbjct: 79 DLHFEQISAIFTGVPDLKKVFEAAKLRRRNGKGTLLFVDEIHRFNKAQQDGFLPYMEDGT 138 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + L+VG S ++N A +R +L L ++ DL+ + Q Sbjct: 139 I-LLVGATTENPSFELN------AAVLSRAQVLV------------LERLDLADLERLTQ 179 Query: 194 RGAKLTGLAVTDEAACEIAMR 214 R K G A+ A A++ Sbjct: 180 RAEKELGKALPLTPAARDALQ 200 >gi|290968723|ref|ZP_06560261.1| recombination factor protein RarA [Megasphaera genomosp. type_1 str. 28L] gi|290781376|gb|EFD93966.1| recombination factor protein RarA [Megasphaera genomosp. type_1 str. 28L] Length = 439 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 20/149 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TLEE GQ + + L+V IE + + +LF GP G+GKTTLA V+A E Sbjct: 25 MRPDTLEEIFGQEQLTGPGAFLRVMIEK-----DMVPSLLFYGPSGVGKTTLAHVIAAET 79 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + + V++ DL ++ + R ++FIDEIHR + ++IL P +E+ Sbjct: 80 KCKFVNLNA-VMSGTADLRRVIETAKQDIQIYQKRTLVFIDEIHRFNKSQQDILLPHVEN 138 Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLI 157 + +++G ++N LSR +I Sbjct: 139 GTI-ILIGATTENPYFEVNRPLLSRLRVI 166 >gi|212697090|ref|ZP_03305218.1| hypothetical protein ANHYDRO_01655 [Anaerococcus hydrogenalis DSM 7454] gi|212675865|gb|EEB35472.1| hypothetical protein ANHYDRO_01655 [Anaerococcus hydrogenalis DSM 7454] Length = 443 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 17/153 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+F GQ K+ K+ + + +F GPPG+GKTTLA+++++ + Sbjct: 22 MRPDNIEDFLGQDHLLGEGKIIRRMIKS--DRIYSSIFYGPPGVGKTTLAKIISKSTNMA 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V + DL + +D + +LFIDEIHR + ++ L P +ED + Sbjct: 80 FEKVSA-VASGISDLKKKIEIAKDNLKYENKKTILFIDEIHRFNKSQQDYLLPFVEDSTI 138 Query: 135 DLMVG---EGPSARSVKINLSR---FTLIAATT 161 +++G E P K +SR F L A T Sbjct: 139 -ILIGATTENPYFEVNKALISRMYVFELKAHTN 170 >gi|121535958|ref|ZP_01667752.1| AAA ATPase, central domain protein [Thermosinus carboxydivorans Nor1] gi|121305450|gb|EAX46398.1| AAA ATPase, central domain protein [Thermosinus carboxydivorans Nor1] Length = 446 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L+EF GQ + KA L +L GPPG GKTTLA ++A G + Sbjct: 22 MRPRSLDEFVGQQHLVGPGRFLRRMLKA--GTLPSLLLFGPPGTGKTTLAYLIANAAGCH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + V A D+ + ++ R +LFIDEIHR + ++ L P +ED Sbjct: 80 FEKLNA-VAAGVADVRKQVEAAQERLKLYGQRTILFIDEIHRFNKGQQDALLPFVED 135 >gi|325273411|ref|ZP_08139666.1| recombination factor protein RarA [Pseudomonas sp. TJI-51] gi|324101456|gb|EGB99047.1| recombination factor protein RarA [Pseudomonas sp. TJI-51] Length = 441 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRPSNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQFCDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 L +G S ++N Sbjct: 134 LFIGATTENPSFELN 148 >gi|221632458|ref|YP_002521679.1| recombination factor protein RarA [Thermomicrobium roseum DSM 5159] gi|221157227|gb|ACM06354.1| ATPase, aaa family [Thermomicrobium roseum DSM 5159] Length = 450 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 20/149 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ L+ IE + L ++ GPPG GKTTLA+++A+ Sbjct: 23 MRPRTLDEVVGQEHVLGPGALLRSLIER-----DQLVSLILWGPPGCGKTTLARLIAKHT 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F S V A D+ ++ DR ++FIDEIHR + ++ L PA+ED Sbjct: 78 RSAFVPLSA-VSASVADIRRVVQEASDRFAQHGQRTIVFIDEIHRFNRAQQDALLPAVED 136 Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLI 157 + +++G S +IN LSR ++ Sbjct: 137 GTI-VLIGATTENPSFEINAPLLSRCRVV 164 >gi|323344318|ref|ZP_08084544.1| AAA family ATPase [Prevotella oralis ATCC 33269] gi|323095047|gb|EFZ37622.1| AAA family ATPase [Prevotella oralis ATCC 33269] Length = 424 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 9 MRPRTLDEYVGQQHLVGEGAVLRKMIDAGRVSS-----FILWGPPGVGKTTLAQIIANKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ + + +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVRDAIERAKSNKFFNTASPILFIDEIHRFSKSQQDSLLGAVER 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|226227315|ref|YP_002761421.1| ATPase [Gemmatimonas aurantiaca T-27] gi|226090506|dbj|BAH38951.1| ATPase [Gemmatimonas aurantiaca T-27] Length = 459 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 33/211 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEE+ GQ E + + + A +R + +D ++F GPPG+GKTTLA+++A+ Sbjct: 25 MRPRTLEEYLGQ-EHLLAVGMPLREALSRGK-VDSMVFWGPPGVGKTTLARLLAQSTEAA 82 Query: 82 FRSTSGPV--IAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F S S +A+ ++ A D +LF+DEIHR + ++ P +E + L Sbjct: 83 FVSFSAVSDGVARVREIVAEAERRRDGGRGTILFVDEIHRFNRAQQDAFLPHVETGTVVL 142 Query: 137 M--VGEGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 + E PS LSR + I +T GL+ ++DR Sbjct: 143 IGATTENPSFALTGALLSRVRVMVLEAIPVSTLEGLVQRAVEDR---------------- 186 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 RG GL++ D+A +A S G R Sbjct: 187 ---DRGLGARGLSIDDDARHLLAESSDGDAR 214 >gi|237836221|ref|XP_002367408.1| ATPase, AAA family domain containing protein [Toxoplasma gondii ME49] gi|211965072|gb|EEB00268.1| ATPase, AAA family domain containing protein [Toxoplasma gondii ME49] gi|221505904|gb|EEE31539.1| werner helicase interacting protein, putative [Toxoplasma gondii VEG] Length = 1101 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 93/216 (43%), Gaps = 51/216 (23%) Query: 22 LRPRTLEEFTGQVEAC-----SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 LRP +LEE+ GQ C +++ +EA L ++ GPPG GKTT+A + R Sbjct: 609 LRPASLEEYVGQ-RGCIQGGRGSIRELLEAGH-----LPSLILWGPPGCGKTTIALLAGR 662 Query: 77 ELGVNFRSTS--GPVIAKAGDLAA--------------LLTNLEDRDVLFIDEIHRLSII 120 +G + S PV K + L + + VLF+DEIHR + Sbjct: 663 SVGKKNSALSLPPPVFKKMSAVTCGVNDVRKVVQEALTLRATTKQKTVLFLDEIHRFNKA 722 Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 ++ L P +E + L+ E PS + LSR RV L PL + Sbjct: 723 QQDALLPHVETGTITLIGATTENPSFEVNRALLSR-------CRVCKL-EPLTE------ 768 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214 EDL TI+QR AK + +T EAA + R Sbjct: 769 -------EDLTTILQRAAKEENVTIT-EAAVRVICR 796 >gi|167034603|ref|YP_001669834.1| recombination factor protein RarA [Pseudomonas putida GB-1] gi|166861091|gb|ABY99498.1| AAA ATPase central domain protein [Pseudomonas putida GB-1] Length = 441 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRPSNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQFCDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 L +G S ++N Sbjct: 134 LFIGATTENPSFELN 148 >gi|304385275|ref|ZP_07367620.1| AAA family ATPase [Pediococcus acidilactici DSM 20284] gi|304328482|gb|EFL95703.1| AAA family ATPase [Pediococcus acidilactici DSM 20284] Length = 425 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEE GQ K+ KA+ L ++ GPPG GKT++A +A Sbjct: 8 MRPRTLEEVVGQKHLVGPGKIISRMVKAKR--LSSMILYGPPGTGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + VL +DEIHRL ++ L P +E Q+ +++G Sbjct: 66 FRMLNAATDSKKQLQIVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPHLESGQI-ILIGA 124 Query: 141 GPSARSVKIN 150 + IN Sbjct: 125 TTENPYININ 134 >gi|152977760|ref|YP_001343389.1| recombination factor protein RarA [Actinobacillus succinogenes 130Z] gi|150839483|gb|ABR73454.1| AAA ATPase central domain protein [Actinobacillus succinogenes 130Z] Length = 439 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP LEEF GQ KV IE + + ++F GPPG+GKTTLAQ++A Sbjct: 20 LRPERLEEFAGQPHLLGEGKVLRRLIEN-----DQISSMIFWGPPGVGKTTLAQIIANST 74 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V + D+ A++ E + ++F+DEIHR + ++ P +E Sbjct: 75 QAGFIEFSA-VTSGIKDIRAIMQQAEQNRRYGAKTIVFVDEIHRFNKAQQDAFLPFVEKG 133 Query: 133 QLDLMVGEGPSARSVKIN 150 + +++G S +IN Sbjct: 134 SI-VLIGATTENPSFEIN 150 >gi|332297274|ref|YP_004439196.1| AAA ATPase central domain protein [Treponema brennaborense DSM 12168] gi|332180377|gb|AEE16065.1| AAA ATPase central domain protein [Treponema brennaborense DSM 12168] Length = 801 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E+ GQ ++ A A + L +F GPPG GKTTLA+V+A N Sbjct: 18 MRPRTLDEYIGQDHIVGKGRLLRRAIAA--DQLTSAIFYGPPGTGKTTLARVIANHTKSN 75 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F T V+ ++ + E R +LF+DE+HR + ++ L P +E+ Sbjct: 76 F-ITLNAVLTGVQNIRDSIAQAEQHYKLYGRRTILFVDEVHRWNRSQQDALLPWVEN 131 >gi|72383277|ref|YP_292632.1| recombination factor protein RarA/unknown domain fusion protein [Prochlorococcus marinus str. NATL2A] gi|72003127|gb|AAZ58929.1| Recombination protein MgsA [Prochlorococcus marinus str. NATL2A] Length = 734 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+EF GQ + ++ + A + + ++L GPPG+GKTTLA+++A + Sbjct: 24 LRPQTLDEFVGQDHILAQGRLLRRSIVA--DKVGNLLLYGPPGVGKTTLARIIALNTLSH 81 Query: 82 FRSTSGPVIAKAGDLAA-------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S +A DL + L R +LFIDE+HR + ++ L P +E+ L Sbjct: 82 F-SVVNAALAGIKDLRSEIESAIDRLNKFGKRTILFIDEVHRFNTAQQDALLPWVENGTL 140 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E P K +SR L Sbjct: 141 TLIGATTENPYFEVNKALVSRSRLF 165 >gi|312195527|ref|YP_004015588.1| AAA ATPase [Frankia sp. EuI1c] gi|311226863|gb|ADP79718.1| AAA ATPase central domain protein [Frankia sp. EuI1c] Length = 622 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 76/182 (41%), Gaps = 49/182 (26%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L+E GQ + S L+ +E + V+ GPPG GKTTLA +V+R Sbjct: 64 LRPRGLDELVGQRHLLGPGSPLRRLVEGGGTTS-----VVLWGPPGTGKTTLAHIVSRAT 118 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED--------------------------------- 105 G FR S V A D+ A++ D Sbjct: 119 GRRFRELSA-VTAGVKDVRAVIDEARDALSSSRSNQSRRMVREPGLFSDAAQAPGGEVPV 177 Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG--EGPSARSVKINLSR---FTLIA 158 R VLFIDE+HR + ++ L PA+E + L+ E PS V LSR FTL Sbjct: 178 DLRTVLFIDEVHRFTRTQQDALLPAVERGWITLVAATTENPSFSVVAPLLSRSLLFTLTP 237 Query: 159 AT 160 T Sbjct: 238 LT 239 >gi|325475344|gb|EGC78529.1| AAA family ATPase [Treponema denticola F0402] Length = 441 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 10/119 (8%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP +L+E+ GQ + A +A + L ++F GPPG GKTTLA+V+A Sbjct: 21 SRMRPISLDEYIGQEHIIGKGCLLRRAIQA--DRLSSLIFFGPPGTGKTTLARVIANTTK 78 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 NF S + V+A + ++N E+ + +LF+DE+HR + ++ L P +E+ Sbjct: 79 SNFLSLNA-VLAGVQQIREAVSNAEENKKLYNRKTILFVDEVHRWNKSQQDALLPWVEN 136 >gi|281357852|ref|ZP_06244338.1| AAA ATPase central domain protein [Victivallis vadensis ATCC BAA-548] gi|281315799|gb|EFA99826.1| AAA ATPase central domain protein [Victivallis vadensis ATCC BAA-548] Length = 455 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 8/122 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L+E+ GQ + K+ A A + V+ GPPG GKT+LA+V+AR Sbjct: 33 LRPRSLDEYIGQNHLLAPGKLLRRAIDA--DRFSSVILSGPPGTGKTSLAEVIARVSNSE 90 Query: 82 FRSTSGPVIAKAG---DLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F SG + A ++A +T R +LF+DEIHR S ++ L P +E+ + Sbjct: 91 FVRLSGVTSSVADVRKEIAQAVTRRRINGRRTILFVDEIHRFSRSQQDSLLPDVENGNVR 150 Query: 136 LM 137 L+ Sbjct: 151 LI 152 >gi|291458146|ref|ZP_06597536.1| ATPase, AAA family [Oribacterium sp. oral taxon 078 str. F0262] gi|291419229|gb|EFE92948.1| ATPase, AAA family [Oribacterium sp. oral taxon 078 str. F0262] Length = 430 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 10/123 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+E GQ E + A A + L ++F GPPG GKTTLA+++AR Sbjct: 22 MRPENLDELVGQQEIAGKGHLLYRAIAA--DKLSSLIFYGPPGTGKTTLARLIARTTKAE 79 Query: 82 FRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + K ++ + L R +LF+DEIHR + ++ L P +ED L Sbjct: 80 FCQLNATSAGKK-EMEEIVERAKKNLGGYGKRTILFVDEIHRFNKAQQDYLLPYVEDGSL 138 Query: 135 DLM 137 L+ Sbjct: 139 ILI 141 >gi|149915873|ref|ZP_01904397.1| ATPase, AAA family protein [Roseobacter sp. AzwK-3b] gi|149810196|gb|EDM70042.1| ATPase, AAA family protein [Roseobacter sp. AzwK-3b] Length = 437 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L + GQ + + L +EA +L ++F GPPG+GKTT+A+++A E Sbjct: 24 LRPRKLADVIGQAQLLGPEAPLGAMLEAG-----SLSSLVFWGPPGVGKTTIARLLADET 78 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 ++F S + + +L + R +LF+DEIHR + ++ P MED Sbjct: 79 DLHFVQISA-IFSGVAELKKVFEQARHRRANGQGTLLFVDEIHRFNKAQQDSFLPHMEDG 137 Query: 133 QLDLMVGEGPSARSVKIN 150 L L+VG S ++N Sbjct: 138 TL-LLVGATTENPSFELN 154 >gi|123965322|ref|YP_001010403.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT 9515] gi|123199688|gb|ABM71296.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9515] Length = 428 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 40/215 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL++F GQ N + A + + +++F GPPG+GKTTL ++++ N Sbjct: 22 LRPKTLDDFFGQESILGNNSLLRNAI--LNDKVGNIIFSGPPGVGKTTLIEIISS----N 75 Query: 82 FRST---SGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 RS V++ +L + N ++R +LFIDE+HR + I ++ L P++E+ Sbjct: 76 TRSALIKLNAVLSSIKELRTEIANAKERLLSSNRKTILFIDEVHRFTSIQQDALLPSIEN 135 Query: 132 FQLDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYE-I 185 + + E P K +SR F+LI L TN L R I +N+Y + Sbjct: 136 GTITFIGATTENPFFAVNKALISRARVFSLIP------LNTNDL--RKIIEKVVNYYACL 187 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 ED K I +T+EA + S G R Sbjct: 188 EDPKAI----------EITEEAISHLIKYSGGDAR 212 >gi|158313527|ref|YP_001506035.1| recombination factor protein RarA [Frankia sp. EAN1pec] gi|158108932|gb|ABW11129.1| AAA ATPase central domain protein [Frankia sp. EAN1pec] Length = 465 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L+E GQ + S L+ +E + V+ GPPG GKTTLA +V+R Sbjct: 22 LRPRGLDEVVGQRHLLAEGSPLRRLVEGGGTTS-----VVLWGPPGTGKTTLAHIVSRAT 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 FR S V A D+ A++ + R VLFIDE+HR + ++ L P++E Sbjct: 77 RRRFRELSA-VTAGVKDVRAVVDEARETLSMSGVRTVLFIDEVHRFTRTQQDALLPSVE 134 >gi|270291003|ref|ZP_06197226.1| ATPase [Pediococcus acidilactici 7_4] gi|270280399|gb|EFA26234.1| ATPase [Pediococcus acidilactici 7_4] Length = 425 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEE GQ K+ KA+ L ++ GPPG GKT++A +A Sbjct: 8 MRPRTLEEVVGQKHLVGPGKIISRMVKAKR--LSSMILYGPPGTGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + VL +DEIHRL ++ L P +E Q+ +++G Sbjct: 66 FRMLNAATDSKKQLQIVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPHLESGQI-ILIGA 124 Query: 141 GPSARSVKIN 150 + IN Sbjct: 125 TTENPYININ 134 >gi|325262409|ref|ZP_08129146.1| ATPase, AAA family [Clostridium sp. D5] gi|324032241|gb|EGB93519.1| ATPase, AAA family [Clostridium sp. D5] Length = 439 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 18/171 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP TL++F GQ KV + + + + ++F GPPG+GKTTLA ++A + Sbjct: 21 SRLRPDTLKDFVGQEHLLGKGKVLRQLIER--DQISSMIFWGPPGVGKTTLASIIAGQTK 78 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +F + S V + ++ ++ E R VLF+DEIHR + ++ P +E Sbjct: 79 ADFINFSA-VTSGIKEIKEVMNQAEQSRRMGIRTVLFVDEIHRFNKAQQDAFLPFVEKGS 137 Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176 + +++G S ++N LSR F L A + V LL++ L + G Sbjct: 138 I-ILIGATTENPSFEVNAALLSRCRVFVLKALEEKDLVKLLSHALANPSGF 187 >gi|283779444|ref|YP_003370199.1| ATPase AAA [Pirellula staleyi DSM 6068] gi|283437897|gb|ADB16339.1| AAA ATPase central domain protein [Pirellula staleyi DSM 6068] Length = 441 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ LEEF GQ K+ KA + L VLF GPPG GKTTLA+++A Sbjct: 22 MRPQRLEEFAGQQHFLGEGKLLRRLLKA--DRLGSVLFYGPPGCGKTTLARLLAVASKRR 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F S V + +L +L D R +LF+DEIHR S ++ L P +E+ Sbjct: 80 FVQLSA-VTSGVKELREMLEKARDELSTGGFRTLLFVDEIHRYSKSQQDALLPDVEE 135 >gi|254449265|ref|ZP_05062712.1| ATPase, AAA family [gamma proteobacterium HTCC5015] gi|198261120|gb|EDY85418.1| ATPase, AAA family [gamma proteobacterium HTCC5015] Length = 443 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 11/136 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR LE++ GQ + K +A ++ + L ++F GPPG GKTTLA+++A Sbjct: 24 LRPRRLEDYCGQQHLIAPGKPLRKAIES--DQLHSMIFWGPPGTGKTTLARLIAEYCDAE 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V++ D+ A + + R VLF+DE+HR + ++ P +ED + Sbjct: 82 FMTLSA-VLSGVKDIRAAVDEAKLRRRQDGRATVLFVDEVHRFNKSQQDAFLPHIEDGTI 140 Query: 135 DLMVGEGPSARSVKIN 150 VG S ++N Sbjct: 141 -FFVGATTENPSFELN 155 >gi|313827647|gb|EFS65361.1| recombination factor protein RarA [Propionibacterium acnes HL063PA2] Length = 446 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 18/147 (12%) Query: 9 SRNVSQEDADISL-LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 S + DA +++ LRPRT++E GQ + S L+ E A + V GPPG Sbjct: 22 SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPG 76 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLS 118 +GKTT+A VV+ F S V A D+ L L VLF+DE+HR S Sbjct: 77 VGKTTIASVVSHATNRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFS 135 Query: 119 IIVEEILYPAMEDFQLDLMVG--EGPS 143 +++L PA+E+ + L+ E PS Sbjct: 136 KAQQDVLLPAVENRTVTLIAATTENPS 162 >gi|15893618|ref|NP_346967.1| recombination factor protein RarA [Clostridium acetobutylicum ATCC 824] gi|15023171|gb|AAK78307.1|AE007547_4 ATPase related to the helicase subunit of Holliday junction resolvase [Clostridium acetobutylicum ATCC 824] gi|325507740|gb|ADZ19376.1| recombination factor protein RarA [Clostridium acetobutylicum EA 2018] Length = 443 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 121/267 (45%), Gaps = 53/267 (19%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L ++ GQ +E L+ +E +++ ++ GPPG+GKTTLA ++A Sbjct: 21 MRPRNLSDYIGQEHILEKGKALRNMLEK-----DSITSMILWGPPGVGKTTLAMIIASTT 75 Query: 79 GVNF----RSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAM 129 NF +TSG I + D+ ++ +D R +LFIDEIHR + ++ P + Sbjct: 76 KCNFVEFSAATSG--IKEIKDI--MIKAEKDRLFGIRTLLFIDEIHRFNKSQQDTFLPHV 131 Query: 130 EDFQLDLMVGEGPSARSVKIN---LSR---FTL--IAATTRVGLLTNPLQDRFGIPIRLN 181 E + +++G S ++N LSR F L ++ V LL N L D Sbjct: 132 EKGDI-ILIGATTENPSFEVNSALLSRCRVFVLKPLSNNDIVKLLKNALTD--------- 181 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KT 240 RG K + ++++ IA+ S G R A +L +++ H T Sbjct: 182 -----------TRGFKNKNIQISEDLLTLIAVYSNGDARTALNVLEMAVLSSKLEHGVVT 230 Query: 241 ITREIADAALLRLAI--DKMGFDQLDL 265 I + I + + A+ DK G + +L Sbjct: 231 INKGILEDCMQNKALIYDKNGEEHYNL 257 >gi|227821784|ref|YP_002825754.1| recombination factor protein RarA [Sinorhizobium fredii NGR234] gi|227340783|gb|ACP25001.1| ATPase, AAA family protein [Sinorhizobium fredii NGR234] Length = 436 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL E TGQ A L I + +L ++F GPPG GKTT+A++++ E Sbjct: 23 LRPRTLAEVTGQEHLTGADGALTRMIASG-----SLGSMIFWGPPGTGKTTVARLLSGEA 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + DL + + R +LF+DEIHR + ++ P ME+ Sbjct: 78 GLAFEQISA-IFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMENG 136 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 137 TV-ILVGATTENPSFELN 153 >gi|288929609|ref|ZP_06423453.1| ATPase, AAA family [Prevotella sp. oral taxon 317 str. F0108] gi|288329114|gb|EFC67701.1| ATPase, AAA family [Prevotella sp. oral taxon 317 str. F0108] Length = 425 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+++ GQ V + L+ IE + + + GPPG+GKTTLAQ+VA++L Sbjct: 9 MRPRSLDDYVGQKHLVGPNAVLRNMIEGGR-----IPSFILWGPPGVGKTTLAQIVAKKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVREVIEKAKGGRFFGSHSPILFIDEIHRFSKSQQDSLLGAVEK 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GIVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|227903996|ref|ZP_04021801.1| crossover junction endodeoxyribonuclease ATPase [Lactobacillus acidophilus ATCC 4796] gi|227868387|gb|EEJ75808.1| crossover junction endodeoxyribonuclease ATPase [Lactobacillus acidophilus ATCC 4796] Length = 478 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+TL E GQ + K + K L +L GPPG GKTTLA V+++ L + Sbjct: 59 LMRPKTLGEMVGQNHLLAKGKPLYQIIKEHI--LLSLLLWGPPGCGKTTLAYVMSQTLRL 116 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 F + + K+ + + ++ VL +DEIHRL+ +++ L P +E+ + L+VG Sbjct: 117 PFEKFNASIQNKSQLQKLIQKHPDESFVLLLDEIHRLTKPIQDYLLPYLENGHV-LLVG 174 >gi|119470156|ref|ZP_01612922.1| recombination protein [Alteromonadales bacterium TW-7] gi|119446577|gb|EAW27851.1| recombination protein [Alteromonadales bacterium TW-7] Length = 447 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 37/225 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP TL+E+ GQ S+ K +A A R +L + GPPG+GKTTLAQ++A Sbjct: 19 MRPTTLDEYIGQQHLLSSDKPLHQAIVAGRCHSL---ILWGPPGVGKTTLAQIIANHADA 75 Query: 81 NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 S V A D+ +T D R ++F+DE+HR + ++ P +ED Sbjct: 76 ELIQMSA-VTAGVKDIRDSVTQAHDNLQSRGQRTLMFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + VG S +N I + RV +L + LQ+ DL T+++ Sbjct: 135 F-IFVGATTENPSFALN----NAILSRARVYVLKS-LQE-------------SDLYTVIE 175 Query: 194 RGAK------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 R + + + D A + S G R LL + D Sbjct: 176 RALEQDEQLNQKNIVIADNAKKALCQASGGDARKVLNLLEQAVDL 220 >gi|150396236|ref|YP_001326703.1| recombination factor protein RarA [Sinorhizobium medicae WSM419] gi|150027751|gb|ABR59868.1| AAA ATPase central domain protein [Sinorhizobium medicae WSM419] Length = 436 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL E TGQ A L I + +L ++F GPPG GKTT+A++++ E Sbjct: 23 LRPRTLGEVTGQEHLTGADGGLTRMIASG-----SLGSMIFWGPPGTGKTTVARLLSGEA 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + DL + + R +LF+DEIHR + ++ P +ED Sbjct: 78 GLAFEQISA-IFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVIEDG 136 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 137 TV-ILVGATTENPSFELN 153 >gi|198276725|ref|ZP_03209256.1| hypothetical protein BACPLE_02924 [Bacteroides plebeius DSM 17135] gi|198270250|gb|EDY94520.1| hypothetical protein BACPLE_02924 [Bacteroides plebeius DSM 17135] Length = 424 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 76/149 (51%), Gaps = 22/149 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL+E+ GQ V + L+ IEA + + + GPPG+GKTTLAQ+VA Sbjct: 9 MRPKTLDEYIGQKHLVGEGAVLRRMIEAGR-----ISSFILWGPPGVGKTTLAQIVANRQ 63 Query: 79 GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 V F + TSG VI KA A + +LFIDEIHR S ++ L A+ Sbjct: 64 EVPFYTLSAVTSGVKEVREVIEKA---KANRFFSQQSPILFIDEIHRFSKSQQDSLLGAV 120 Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTL 156 E + L+ E PS ++ LSR L Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|184159941|ref|YP_001848280.1| recombination factor protein RarA [Acinetobacter baumannii ACICU] gi|183211535|gb|ACC58933.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Acinetobacter baumannii ACICU] gi|322509857|gb|ADX05311.1| Putative ATPase [Acinetobacter baumannii 1656-2] Length = 421 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VIA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR +TL + + LL N LQ DRF ++ Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDRF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 + IE+ ++Q A Sbjct: 176 YIHIEEYDALLQFAA 190 >gi|120437189|ref|YP_862875.1| recombination factor protein RarA [Gramella forsetii KT0803] gi|117579339|emb|CAL67808.1| AAA family ATPase [Gramella forsetii KT0803] Length = 424 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 70/146 (47%), Gaps = 21/146 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TLE++ Q + LK I+ + ++F GPPG+GKTTLA ++A E Sbjct: 9 LRPKTLEDYLSQQHLIGKNGALKQQIQQG-----IIPSMIFWGPPGVGKTTLANIIATES 63 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 G F + S VI KA L T +LFIDEIHR S ++ L A+ Sbjct: 64 GRPFFTLSAISSGVKDVREVIEKAKKSEGLFTT--KSPILFIDEIHRFSKSQQDSLLGAV 121 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153 E + L+ E PS + LSR Sbjct: 122 EKGWVTLIGATTENPSFEVISALLSR 147 >gi|114778010|ref|ZP_01452910.1| ATPase [Mariprofundus ferrooxydans PV-1] gi|114551616|gb|EAU54169.1| ATPase [Mariprofundus ferrooxydans PV-1] Length = 448 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 34/211 (16%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L++ GQ + A S + + + +F GPPG+GKTTLA V+A Sbjct: 26 IRPAVLQDVAGQPDLTAADSWFSTMVSEGRCCS-----CIFWGPPGVGKTTLATVMADAA 80 Query: 79 GVNFRSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 G+ F S KA D+ + +LF+DEIHR + +++L P +ED L + Sbjct: 81 GIPFVQLSAVSAGKAEVQDVVKRARSAGQTWLLFLDEIHRFNKAQQDVLLPCIEDGTL-V 139 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196 +VG S +N N L R + I L + D+ I++R Sbjct: 140 LVGATTENPSFSLN-----------------NALLSRCRV-IVLQALQASDVAVILKRAC 181 Query: 197 KLTG-----LAVTDEAACEIAMRSRGTPRIA 222 + G ++ D+A +A S G R A Sbjct: 182 RYLGDQAKAFSLDDDALVWLAENSDGDARYA 212 >gi|58337368|ref|YP_193953.1| recombination factor protein RarA [Lactobacillus acidophilus NCFM] gi|58254685|gb|AAV42922.1| chromosome segregation helicase [Lactobacillus acidophilus NCFM] Length = 429 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+TL E GQ + K + K L +L GPPG GKTTLA V+++ L + Sbjct: 10 LMRPKTLGEMVGQNHLLAKGKPLYQIIKEHI--LLSLLLWGPPGCGKTTLAYVMSQTLRL 67 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 F + + K+ + + ++ VL +DEIHRL+ +++ L P +E+ + L+VG Sbjct: 68 PFEKFNASIQNKSQLQKLIQKHPDESFVLLLDEIHRLTKPIQDYLLPYLENGHV-LLVG 125 >gi|212702534|ref|ZP_03310662.1| hypothetical protein DESPIG_00553 [Desulfovibrio piger ATCC 29098] gi|212673975|gb|EEB34458.1| hypothetical protein DESPIG_00553 [Desulfovibrio piger ATCC 29098] Length = 408 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 32/187 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + F GQ S LK + A E L +L GPPG GK+TLA ++AR Sbjct: 11 MRPDDPDLFLGQSHLASRLKSLMAA-----ERLPSLLLFGPPGCGKSTLALLLARSRKRP 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 + S P +AG L L +L ++L +DE+HR S ++ P +E +L L+ Sbjct: 66 YLRLSAP---EAG-LQHLRRSLNGIEILVLDELHRFSKAQQDFFLPLVESGELTLLATTT 121 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 E PS + LSR + +RL +L + +RGA+ T Sbjct: 122 ENPSFSVTRQLLSRLHV---------------------LRLRPLGRSELMELARRGAEQT 160 Query: 200 GLAVTDE 206 G+ + DE Sbjct: 161 GVTLGDE 167 >gi|229820501|ref|YP_002882027.1| AAA ATPase central domain protein [Beutenbergia cavernae DSM 12333] gi|229566414|gb|ACQ80265.1| AAA ATPase central domain protein [Beutenbergia cavernae DSM 12333] Length = 484 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 14/145 (9%) Query: 12 VSQEDADISL-LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 ++ DA +++ +RP + E GQ +E + L+ E A A V+ GPPG GK Sbjct: 16 AARPDAPLAVRMRPASASEVVGQEHLLEPGAPLRRLTEPADPGAPPPSSVILWGPPGTGK 75 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSII 120 TTLA ++A G F S V A D+ A++ + R VLF+DE+HR S Sbjct: 76 TTLAYLIAHASGRRFVELSA-VTAGVRDVRAVIDDARRRLAGGGVETVLFVDEVHRFSKT 134 Query: 121 VEEILYPAMEDFQLDLMVG--EGPS 143 ++ L P++E+ + L+ E PS Sbjct: 135 QQDALLPSVENRWVTLVAATTENPS 159 >gi|282856171|ref|ZP_06265454.1| AAA ATPase central domain protein [Pyramidobacter piscolens W5455] gi|282585930|gb|EFB91215.1| AAA ATPase central domain protein [Pyramidobacter piscolens W5455] Length = 439 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 18/169 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L+EF GQ K+ + + ++F GPPG+GKTTLA+++A + Sbjct: 19 LRPRSLDEFVGQTHLLGPDKILRRLIVN--DTISSMIFWGPPGVGKTTLARIIANQTKAE 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V + ++ ++ E + ++F+DEIHR + ++ P +E + Sbjct: 77 FINFSA-VTSGIKEIRTVMQQAESNRAFGGKTIVFVDEIHRFNKAQQDAFLPFVEKGSI- 134 Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176 +++G S ++N LSR F L A TT V LL L D G Sbjct: 135 ILIGATTENPSFEVNGALLSRCKVFVLQALTTDELVSLLQRALADPRGF 183 >gi|314927363|gb|EFS91194.1| recombination factor protein RarA [Propionibacterium acnes HL044PA1] gi|328907448|gb|EGG27214.1| recombination factor protein RarA [Propionibacterium sp. P08] Length = 474 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ + + S L+ E A + V GPPG+GKTT+A VV+ Sbjct: 48 LRPRTIDEIVGQQHLLTSGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 102 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ L L VLF+DE+HR S +++L PA+E+ Sbjct: 103 NRRFVEISA-VTAGVKDVRRELDTARRQLALGKPTVLFVDEVHRFSKAQQDVLLPAVENR 161 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 162 TVTLIAATTENPS 174 >gi|312865956|ref|ZP_07726177.1| replication-associated recombination protein A [Streptococcus downei F0415] gi|311098360|gb|EFQ56583.1| replication-associated recombination protein A [Streptococcus downei F0415] Length = 449 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 10/137 (7%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP++L++F GQ K E + + + ++F GPPG+GKTTLA+++A++ Sbjct: 19 SRMRPQSLDDFVGQEHLVGQGKFLREMIEK--DQVSSMIFWGPPGVGKTTLAEIIAKKTN 76 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S V+ ++ ++ E ++ ++FIDEIHR + ++ P +E Sbjct: 77 AKFITFSA-VMNGIKEIRTIMNEAEENRSFGEKTIVFIDEIHRFNKAQQDAFLPYVEKGS 135 Query: 134 LDLMVGEGPSARSVKIN 150 + +++G S ++N Sbjct: 136 I-ILIGATTENPSFEVN 151 >gi|288927100|ref|ZP_06420988.1| ATPase, AAA family [Prevotella buccae D17] gi|288336127|gb|EFC74520.1| ATPase, AAA family [Prevotella buccae D17] Length = 419 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 22/149 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+++ GQ V + L+ IE + + + GPPG+GKTTLAQ++A L Sbjct: 8 MRPRTLDDYVGQQHLVGPGAVLRRMIEGGR-----ISSFILWGPPGVGKTTLAQIIANRL 62 Query: 79 GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F + TSG VI +AG +L +LFIDEIHR S ++ L A+ Sbjct: 63 KTPFYTLSAVTSGVKDVREVIERAGR-NRFFDSLS--PILFIDEIHRFSKSQQDSLLGAV 119 Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTL 156 E + L+ E PS ++ LSR L Sbjct: 120 EKGVVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|313837756|gb|EFS75470.1| recombination factor protein RarA [Propionibacterium acnes HL037PA2] gi|314972693|gb|EFT16790.1| recombination factor protein RarA [Propionibacterium acnes HL037PA3] Length = 461 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ + + S L+ E A + V GPPG+GKTT+A VV+ Sbjct: 35 LRPRTIDEIVGQQHLLTSGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ L L VLF+DE+HR S +++L PA+E+ Sbjct: 90 NRRFVEISA-VTAGVKDVRRELDTARRQLALGKPTVLFVDEVHRFSKAQQDVLLPAVENR 148 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 149 TVTLIAATTENPS 161 >gi|269795071|ref|YP_003314526.1| Recombination protein MgsA [Sanguibacter keddieii DSM 10542] gi|269097256|gb|ACZ21692.1| Recombination protein MgsA [Sanguibacter keddieii DSM 10542] Length = 490 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 15/136 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAA--KARAEALDHVLFVGPPGLGKTTLAQVVAR 76 +RP +L E GQ S L+ +E A +R A V+ GPPG GKTTLA ++A Sbjct: 27 MRPASLAEVAGQKHLLVQGSPLRRLVEPADDSSRRAAPGSVILWGPPGTGKTTLAYLIAT 86 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129 G F S V A D+ A++ + R VLFIDE+HR S ++ L P++ Sbjct: 87 SSGRRFVELSA-VTAGVKDVRAVIEDARRRLATGGSETVLFIDEVHRFSKSQQDALLPSV 145 Query: 130 EDFQLDLMVG--EGPS 143 E+ + L+ E PS Sbjct: 146 ENRWVTLVAATTENPS 161 >gi|146297065|ref|YP_001180836.1| recombination factor protein RarA [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410641|gb|ABP67645.1| Recombination protein MgsA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 444 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE GQ K K + L ++ GPPG GKTT+A V+A+ Sbjct: 22 LRPKRLEEIVGQEHILGEGKPLYNLIKN--DKLTSIILYGPPGTGKTTIAHVIAQVTNNI 79 Query: 82 FRSTSGPVIAKAGDLAALL--TNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131 F+S + IA D+ ++ LE R +LFIDEIHR + + ++ L P++E+ Sbjct: 80 FKSINA-TIAGINDIKKIIEEAKLEFSQGGRRTILFIDEIHRFNKLQQDALLPSVEE 135 >gi|320159500|ref|YP_004172724.1| putative ATPase [Anaerolinea thermophila UNI-1] gi|319993353|dbj|BAJ62124.1| putative ATPase [Anaerolinea thermophila UNI-1] Length = 463 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 11/141 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRT +E GQ K+ A + ++ GPPG GKTTLAQ++A+ + Sbjct: 22 LRPRTFDEMVGQEHIIGPGKLLRRAIETD-RLFSSIILWGPPGTGKTTLAQLIAQYTQAH 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V+A DL ++ E+ R +LF+DE+HR + ++ L P +E + Sbjct: 81 FEVISA-VLAGVPDLRRVIQEAEERRKLYRRRTILFVDEVHRWNKAQQDALLPHVESGMI 139 Query: 135 DLM--VGEGPSARSVKINLSR 153 L+ E P + +SR Sbjct: 140 TLVGATTENPYFEVISALVSR 160 >gi|226330732|ref|ZP_03806250.1| hypothetical protein PROPEN_04652 [Proteus penneri ATCC 35198] gi|225201527|gb|EEG83881.1| hypothetical protein PROPEN_04652 [Proteus penneri ATCC 35198] Length = 354 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 SRN Q A + +RP TLE++ GQ + K A KA L ++ GPPG GK Sbjct: 16 FSRNEFQPLA--ARMRPETLEQYIGQTHLLAEGKPLPRAIKA--GQLHSMILWGPPGTGK 71 Query: 68 TTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 TTLA+++ R + TSG I ++ ++A N R +LF+DE+HR + + Sbjct: 72 TTLAEIIGRYAQADIERLSAVTSGIKEIRESIEIARQNRNAGRRTILFVDEVHRFNKSQQ 131 Query: 123 EILYPAMEDFQLDLM--VGEGPS 143 + P +ED + + E PS Sbjct: 132 DAFLPHIEDGTITFIGATTENPS 154 >gi|118474633|ref|YP_892891.1| recombination factor protein RarA [Campylobacter fetus subsp. fetus 82-40] gi|118413859|gb|ABK82279.1| ATPase, AAA family [Campylobacter fetus subsp. fetus 82-40] Length = 397 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP + + GQ + FI++ K + H LF G G GKTT+A+++A+++ Sbjct: 7 FRPNNINDMVGQKDIVELFSKFIKSKK-----IPHSLFFGATGCGKTTMAKIIAKQMNYE 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130 F G + K+ D+ +++ E + ++FIDE HRLS +E L ME Sbjct: 62 FFELDGANL-KSEDIRKIISKFETTLYKPLIFIDEFHRLSKTQQETLLIPME 112 >gi|256545396|ref|ZP_05472759.1| AAA family ATPase [Anaerococcus vaginalis ATCC 51170] gi|256398957|gb|EEU12571.1| AAA family ATPase [Anaerococcus vaginalis ATCC 51170] Length = 443 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 17/152 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+F GQ K+ K+ + + +F GPPG+GKTTLA++++ + Sbjct: 22 MRPEKIEDFLGQDHLLGEGKILRRMIKS--DRIYSSIFYGPPGVGKTTLAKIISNSTNMA 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V + DL + +D + +LFIDEIHR + ++ L P +ED + Sbjct: 80 FEKVSA-VASGINDLKKKIQIAKDNLKFENKKTILFIDEIHRFNKSQQDYLLPFVEDSTI 138 Query: 135 DLMVG---EGPSARSVKINLSR---FTLIAAT 160 +++G E P K +SR F L A T Sbjct: 139 -ILIGATTENPYFEVNKALISRMYVFELKAHT 169 >gi|295098785|emb|CBK87874.1| Recombination protein MgsA [Eubacterium cylindroides T2-87] Length = 445 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLEE+ GQ + K+ + + + + ++F GPPG+GKTTLA+++A + Sbjct: 20 MRPETLEEYVGQHQLVEKGKLLWQMIEN--DQVTSMIFWGPPGVGKTTLARIIAHQTESY 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDV------LFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + ++ ++ + R V LF+DEIHR + ++ P +E + Sbjct: 78 FVDFSA-VTSGIKEIKEVMKQADQRKVLGQKTILFVDEIHRFNKAQQDAFLPYVEKGSI- 135 Query: 136 LMVGEGPSARSVKIN 150 +++G S +IN Sbjct: 136 ILIGATTENPSFEIN 150 >gi|227503535|ref|ZP_03933584.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium accolens ATCC 49725] gi|227075571|gb|EEI13534.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium accolens ATCC 49725] Length = 461 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TLEE GQ + K + EA V+ GPPG GKTT+A ++A ++G N Sbjct: 44 MRPQTLEEVVGQDHLLAPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIASQMGQN 101 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + + ++T+ R VLFIDE+HR S ++ L A+E+ + Sbjct: 102 FVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVENRTVL 160 Query: 136 LMVG--EGPS 143 L+ E PS Sbjct: 161 LVAATTENPS 170 >gi|319899072|ref|YP_004159165.1| ATPase, AAA family [Bartonella clarridgeiae 73] gi|319403036|emb|CBI76591.1| ATPase, AAA family [Bartonella clarridgeiae 73] Length = 438 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 33/231 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L E GQ + F+ A + ++F GPPG GKTT+A+++A E Sbjct: 24 MRPRSLNEVVGQNHLIGT-EGFLSLMVASG-SFSSMIFWGPPGTGKTTIARLLALETNFV 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + +L + + R +LFIDEIHR + ++ P MED + Sbjct: 82 FEQVSA-IFTGISELKKIFEAAQARLMSGYQTLLFIDEIHRFNRAQQDSFLPFMEDGTI- 139 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 ++VG S ++N A +R +LT D E L T+++R Sbjct: 140 ILVGATTENPSFELN------AALLSRARVLTFRSHDN------------ESLDTLLKRA 181 Query: 196 AKLTGLAVT-DEAACEIAMR-SRGTPRIAGRL---LRRVRDFAEVAHAKTI 241 K G ++ D+ A EI +R S G R+A L + RV EV + +T+ Sbjct: 182 EKAEGRSLPLDDHAREILIRVSDGDARVALTLAEEIWRVARSEEVFNTETL 232 >gi|332879429|ref|ZP_08447125.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682619|gb|EGJ55520.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 423 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + + L+ I++ + + + GPPG+GKTTLAQ++A L Sbjct: 9 LRPQTLDDYIGQKHLVGSDAVLRKMIDSGR-----ISSFILWGPPGVGKTTLAQIIAHRL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVREVIEKARNNRFFTQASPILFIDEIHRFSKSQQDSLLGAVEQ 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GTVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|332535766|ref|ZP_08411508.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Pseudoalteromonas haloplanktis ANT/505] gi|332034834|gb|EGI71368.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Pseudoalteromonas haloplanktis ANT/505] Length = 447 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 97/225 (43%), Gaps = 37/225 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP TL+E+ GQ S K +A A R +L + GPPG+GKTTLAQ++A Sbjct: 19 MRPTTLDEYIGQQHLLSGDKPLHQAIVAGRCHSL---ILWGPPGVGKTTLAQIIANHADA 75 Query: 81 NFRSTSGPVIAKAGDLAALLT----NLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + S V A D+ +T NLE R ++F+DE+HR + ++ P +ED Sbjct: 76 SLIQMSA-VTAGVKDIRDSVTQARDNLESRGQRTLMFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + VG S +N I + RV +L + L D DL T+++ Sbjct: 135 F-IFVGATTENPSFALN----NAILSRARVYVLKS-LAD-------------TDLYTVIE 175 Query: 194 RGAK------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 R K + + D A + S G R LL + D Sbjct: 176 RALKQDEQLSQKHITIADNAKKALCQASGGDARKVLNLLEQAVDL 220 >gi|119713533|gb|ABL97586.1| ATPase AAA family protein [uncultured marine bacterium EB0_35D03] Length = 417 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 26/193 (13%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +LRP L +F GQ + K I A A + L ++F GP G+GKTTLA+++ ++G Sbjct: 10 VLRPTKLNDFIGQDHLLKSDKP-IGKALADKQFLS-MVFWGPSGVGKTTLARIICSQMGA 67 Query: 81 NFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 +F S + + + A L + +LF+DEIHR + ++ P +E L Sbjct: 68 HFEQMSAVLDGIKELRNVIEHAELYKQHDKNTILFVDEIHRFNKAQQDAFLPHIES-GLI 126 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 ++G S +IN S + + RV +L N L+D EDLK I + Sbjct: 127 TLIGATTENPSFEINSS----LLSRMRVYIL-NKLRD-------------EDLKIIASKA 168 Query: 196 AKLTGLAVTDEAA 208 K + + D A Sbjct: 169 IKSQKITLKDNDA 181 >gi|311031534|ref|ZP_07709624.1| recombination factor protein RarA [Bacillus sp. m3-13] Length = 423 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E GQ + K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPRTIDEMVGQEHLVGDGKIIQRMVKAKH--LSSMILYGPPGIGKTSIATAIAGSTQYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + V K ++ A + + +L +DE+HRL ++ L P +E+ ++ +++G Sbjct: 68 FRTLNAVVHNKKDMEIVAEEAKMSGKVILILDEVHRLDKAKQDFLLPHLENGRI-VLIGA 126 Query: 141 GPSARSVKIN 150 S IN Sbjct: 127 TTSNPYHAIN 136 >gi|134117618|ref|XP_772580.1| hypothetical protein CNBL0580 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255195|gb|EAL17933.1| hypothetical protein CNBL0580 [Cryptococcus neoformans var. neoformans B-3501A] Length = 626 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 22/154 (14%) Query: 23 RPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP + ++ GQ + S L+V IEA+K + + GPPG GKTTLA+++A+ G Sbjct: 146 RPSEISQYIGQSDIVGLGSLLRVQIEASKL----VGSCILWGPPGCGKTTLARLIAKSSG 201 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 +F+ S + D+ + ++ R VL IDEIHR + +++L P +E Sbjct: 202 ADFKELSA-TSSGTQDVRQVFEKAKNGLQMTGRRTVLMIDEIHRFNRAQQDLLLPYVEKG 260 Query: 133 QLDLMVGEGPSARSVKIN---LSR---FTLIAAT 160 + L +G S K+N LSR FTL A + Sbjct: 261 WIQL-IGATTENPSFKVNGALLSRCQVFTLHAHS 293 >gi|110598474|ref|ZP_01386745.1| AAA ATPase, central region [Chlorobium ferrooxidans DSM 13031] gi|110339924|gb|EAT58428.1| AAA ATPase, central region [Chlorobium ferrooxidans DSM 13031] Length = 447 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L++ GQ V L+ FI + + L ++F GPPG GKTTLA++ A L Sbjct: 31 VRPRSLDDMAGQEHLVGPSGPLRRFISSGQ-----LPSMIFWGPPGSGKTTLAEICAASL 85 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S + + D+ L N + R +LFIDEIHR + ++ L A+E Sbjct: 86 NYRFEQLSA-IDSGVKDVRKALDNAQKSRASGLRTILFIDEIHRFNKGQQDTLLHAIEQ- 143 Query: 133 QLDLMVGEGPSARSVKIN 150 L +++G S ++N Sbjct: 144 GLIVLIGATTENPSFEVN 161 >gi|304436891|ref|ZP_07396855.1| replication-associated recombination protein A [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370090|gb|EFM23751.1| replication-associated recombination protein A [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 447 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 18/159 (11%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHV 57 M ++ GL +R Q A+ +RPRTL++F GQ K+ IE+ + + + Sbjct: 3 MDEQGGLFARAAYQPLAE--RVRPRTLDDFVGQEHLLGQGKILRRLIESDR-----ITSM 55 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111 +F GPPG+GKTTLAQ++A F + S V + ++ ++ + +R V+F+ Sbjct: 56 IFWGPPGVGKTTLAQIIAARTKAEFITFSA-VTSGIKEIRTVMQEADRRRMYGERIVVFV 114 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 DEIHR + ++ P +E + +++G S +IN Sbjct: 115 DEIHRFNKAQQDAFLPFVEKGSI-VLIGATTENPSFEIN 152 >gi|168071185|ref|XP_001787086.1| predicted protein [Physcomitrella patens subsp. patens] gi|162659751|gb|EDQ48100.1| predicted protein [Physcomitrella patens subsp. patens] Length = 216 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++++E GQ + K+ A +A + + ++F GPPG GKTTLA+V+AR + Sbjct: 24 MRPQSIQEVIGQSHILAPGKLLRRAIEA--DQVSSLIFYGPPGTGKTTLAKVIARSTRSH 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDV-------LFIDEIHRLSIIVEEILYPAMED 131 F S V A D+ ++ ++R V LF+DEIHR + ++ L P +E+ Sbjct: 82 F-SELNAVTAGVADIRKVVEAAKERLVMDNQRTTLFVDEIHRFNKSQQDALLPYVEE 137 >gi|328881155|emb|CCA54394.1| ATPase, AAA family [Streptomyces venezuelae ATCC 10712] Length = 452 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + V+ GPPG+GKTTLA VV++ Sbjct: 29 MRPRTLDEVVGQQHLLKPGSPLRRLVGDGDGGPAGASSVILWGPPGIGKTTLAYVVSKAT 88 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 89 NKRFVELSA-ITAGVKEVRAVIDGARRAVGGYGKETVLFLDEIHRFSKAQQDSLLPAVEN 147 Query: 132 FQLDLM 137 + L+ Sbjct: 148 RWVTLI 153 >gi|189346365|ref|YP_001942894.1| recombination factor protein RarA [Chlorobium limicola DSM 245] gi|189340512|gb|ACD89915.1| AAA ATPase central domain protein [Chlorobium limicola DSM 245] Length = 449 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 15/145 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL++ +GQ L+ F+E+ + L ++ GPPG GKTTLA++ A L Sbjct: 33 VRPRTLDDLSGQAHLVGKDGPLRSFLESGR-----LPSMILWGPPGSGKTTLAEICATSL 87 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S + KA D A R +LFIDEIHR + ++ L A+E Sbjct: 88 HYRFEQLSAIDAGVKEVRKALDGARQARRSGQRTILFIDEIHRFNKAQQDTLLHAIEQGL 147 Query: 134 LDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS LSR + Sbjct: 148 ITLIGATTENPSFEVNGALLSRMQV 172 >gi|148377334|ref|YP_001256210.1| recombination factor protein RarA [Mycoplasma agalactiae PG2] gi|148291380|emb|CAL58764.1| ATPase, AAA family [Mycoplasma agalactiae PG2] Length = 404 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 9/109 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL++ GQ LK AR + +F G G GKT+ A +A +LG+ Sbjct: 8 LRPKTLDDIIGQKSVVELLK-----KVARDKIYSSFIFFGESGTGKTSAAVALANDLGLK 62 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + + V +KA L+ L D DVL IDEIHRL+ ++IL +E Sbjct: 63 YDYFNASVNSKA----ELIKMLADNDVLIIDEIHRLNKDKQDILLSYLE 107 >gi|300023015|ref|YP_003755626.1| ATPase AAA [Hyphomicrobium denitrificans ATCC 51888] gi|299524836|gb|ADJ23305.1| AAA ATPase central domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 439 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 15/146 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ V L +++ + + ++F GPPG GKTT+A+++A E Sbjct: 22 LRPKTLPEVAGQDHIVGPDGTLTRMLKSGR-----VPSLIFWGPPGSGKTTIARLLANET 76 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +NF S + KA + A ++ +LFIDEIHR + ++ P MED Sbjct: 77 NLNFEQLSAIFSGVADLRKAFERAKIMREQGKGTLLFIDEIHRFNRSQQDSFLPYMEDGT 136 Query: 134 LDLM--VGEGPSARSVKINLSRFTLI 157 + L+ E PS LSR +++ Sbjct: 137 ITLVGATTENPSFELNAAVLSRASVL 162 >gi|170722571|ref|YP_001750259.1| recombination factor protein RarA [Pseudomonas putida W619] gi|169760574|gb|ACA73890.1| AAA ATPase central domain protein [Pseudomonas putida W619] Length = 441 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRPSSLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQFCDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPFVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|332662821|ref|YP_004445609.1| AAA ATPase central domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332331635|gb|AEE48736.1| AAA ATPase central domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 425 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 12/141 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ V +A A L ++ GPPG+GKTTLA ++A ELG Sbjct: 8 MRPTRLADYLGQEHLVGEGSVLRQALAAGF--LPSIILWGPPGVGKTTLANILASELGRP 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S S + A D+ + E + +LFIDEIHR S ++ L A+E + Sbjct: 66 FYSLSA-IAAGVKDVRDTIQKAEQQRFFNRPNPILFIDEIHRFSKSQQDALLGAVEKGVI 124 Query: 135 DLM--VGEGPSARSVKINLSR 153 LM E PS + LSR Sbjct: 125 TLMGATTENPSFEVIPALLSR 145 >gi|157962052|ref|YP_001502086.1| recombination factor protein RarA [Shewanella pealeana ATCC 700345] gi|157847052|gb|ABV87551.1| AAA ATPase central domain protein [Shewanella pealeana ATCC 700345] Length = 443 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 13/137 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP TLE++ GQ K +A +A RA ++ +F GPPG GKTTLA++VAR Sbjct: 19 MRPETLEQYIGQTHLLGEGKPLRQALEAGRAHSM---MFWGPPGTGKTTLAELVARYANA 75 Query: 81 NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + S V + ++ + + + ++ R +LF+DE+HR + ++ P +ED Sbjct: 76 HVERISA-VTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGT 134 Query: 134 LDLMVGEGPSARSVKIN 150 + + +G S +IN Sbjct: 135 V-IFIGATTENPSFEIN 150 >gi|322514789|ref|ZP_08067812.1| replication-associated recombination protein A [Actinobacillus ureae ATCC 25976] gi|322119251|gb|EFX91381.1| replication-associated recombination protein A [Actinobacillus ureae ATCC 25976] Length = 446 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 13/118 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 19 MRPRTLAEYIGQSHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 73 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 74 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIED 131 >gi|293610473|ref|ZP_06692773.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826817|gb|EFF85182.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 421 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VIA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR +TL + + LL N LQ D+F ++ Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQSDKF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 + IE+ ++Q A Sbjct: 176 YIHIEEYDALIQFAA 190 >gi|265751828|ref|ZP_06087621.1| recombination factor protein RarA [Bacteroides sp. 3_1_33FAA] gi|263236620|gb|EEZ22090.1| recombination factor protein RarA [Bacteroides sp. 3_1_33FAA] Length = 425 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 9 LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVRDVIEKARSNHFFSQASPILFIDEIHRFSKSQQDSLLGAVET 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|310778223|ref|YP_003966556.1| Recombination protein MgsA [Ilyobacter polytropus DSM 2926] gi|309747546|gb|ADO82208.1| Recombination protein MgsA [Ilyobacter polytropus DSM 2926] Length = 412 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 48/231 (20%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL ++ GQ E S L+ I K + + +F GPPG GKT+LA+++A EL Sbjct: 19 MRPKTLLDYVGQEEIIGEKSVLRKLITKGK-----MINSIFFGPPGTGKTSLAEIIAEEL 73 Query: 79 GVNFRSTSGPVIAKAGDL------AALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMED 131 +F + A D A LE+ R +LF+DEIHR + + ++ L P E+ Sbjct: 74 SYSFEKMNA-TTANLSDFREVVERAKKRVELENRRTLLFLDEIHRFNKLQQDSLLPYTEE 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIED-- 187 L+V L+ ATT L N L R + F ++E+ Sbjct: 133 ---GLIV-----------------LVGATTENPYYTLNNALLSRCMV---FEFKKLEERH 169 Query: 188 LKTIVQRGAKLTGL--AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236 ++ +V++G K + ++ E I SRG R+A L V FA A Sbjct: 170 IRELVKKGCKRLDILEKLSSEMEDIILELSRGDARVA---LNYVELFANTA 217 >gi|300934544|ref|ZP_07149800.1| recombination factor protein RarA [Corynebacterium resistens DSM 45100] Length = 545 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 24/178 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ EA S L+ IE R ++ V+ GPPG GKTT+A +++ Sbjct: 61 MRPRSLDEVVGQKEALGAGSPLRRLIEG---RGDS--SVILYGPPGTGKTTIASLISAAS 115 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 +F + S + + ++ A++ N R VLFIDE+HR S ++ L A+E+ Sbjct: 116 DRHFEALSA-LNSGVKEVRAVIDNARQRLIHGRATVLFIDEVHRFSKTQQDALLSAVENR 174 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVG-----LLTNPLQD--RFGIPIRLN 181 + L+ E PS V LSR L+ + +LT ++D FG +RL+ Sbjct: 175 TVLLVAATTENPSFSVVAPLLSRSLLVQLHSLTDEDIATVLTRAVEDPRGFGSKVRLS 232 >gi|298246048|ref|ZP_06969854.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM 44963] gi|297553529|gb|EFH87394.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM 44963] Length = 481 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 73/145 (50%), Gaps = 16/145 (11%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S +RPRTL+E GQ K+ IE+ + + +LF GPPG GKTTL++ +AR Sbjct: 45 SRMRPRTLDELLGQEHLLGPGKLLRRTIESGRVTS-----MLFWGPPGSGKTTLSEAIAR 99 Query: 77 ELGVNF---RSTSGPV--IAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPAME 130 F +TS V + + D AA L + R +LFIDEIHR + ++ + P +E Sbjct: 100 HADARFVTLSATSAGVADLRRVVDEAAKLRQFSQRRTILFIDEIHRFNKAQQDAVLPHVE 159 Query: 131 DFQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS LSR Sbjct: 160 RGTVTLIGATTENPSFEVNSALLSR 184 >gi|123967627|ref|YP_001008485.1| recombination factor protein RarA [Prochlorococcus marinus str. AS9601] gi|123197737|gb|ABM69378.1| putative ATPase, AAA family [Prochlorococcus marinus str. AS9601] Length = 429 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 20/143 (13%) Query: 2 MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M E L + N SQ + + L LRP+ LE+F GQ + N + +A + + + + Sbjct: 1 MHSENLFT-NYSQIENNAPLADKLRPKNLEDFFGQ-QPILNENSLLRSAILN-DKVSNFI 57 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTS---GPVIAKAGDLAALLTNLEDR-------DV 108 F GPPG+GKTTL ++++ N RS V++ +L + N +DR + Sbjct: 58 FSGPPGVGKTTLIEIIS----FNTRSKLIRLNAVLSSVKELRNEIANAKDRLINSKRKTI 113 Query: 109 LFIDEIHRLSIIVEEILYPAMED 131 LFIDE+HR + + ++ L P++E+ Sbjct: 114 LFIDEVHRFTSLQQDALLPSIEN 136 >gi|75812394|ref|YP_320013.1| fused recombination factor protein RarA/unknown domain-containing protein [Anabaena variabilis ATCC 29413] gi|75705150|gb|ABA24824.1| Recombination protein MgsA [Anabaena variabilis ATCC 29413] Length = 739 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 8/116 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ ++ A + L ++F GPPG GKTTLA+V+A + Sbjct: 22 MRPRTLDEFVGQDHIIGPGRLLRRAISL--DQLSSLIFYGPPGTGKTTLARVIANTTRAH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131 F + + + AA+ T E R +LF+DE+HR + ++ L P +E+ Sbjct: 80 FLAINAVLSGVKEIRAAIDTAQEQRKFHNQRTILFVDEVHRFNKSQQDALLPWVEN 135 >gi|89092932|ref|ZP_01165884.1| ATPase, AAA family protein [Oceanospirillum sp. MED92] gi|89082957|gb|EAR62177.1| ATPase, AAA family protein [Oceanospirillum sp. MED92] Length = 452 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 44/230 (19%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP++L E+ GQ L+ +E A + ++F GPPG+GKTTLA+++A + Sbjct: 17 MRPQSLAEYCGQAHLLGRDKPLRTALEQGSAHS-----MIFWGPPGVGKTTLAKLIAHHV 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 +F + S V++ D+ + + + +LF+DE+HR + ++ P +ED Sbjct: 72 DAHFLTLSA-VLSGVKDIRVAVEQAKQHSAQTGRKTILFVDEVHRFNKSQQDAFLPYIED 130 Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFY 183 + + VG S ++N LSR + + AT + +L L D+ Sbjct: 131 GTI-IFVGATTENPSFELNNALLSRARVYLLRSLEATDILNVLNRALDDQ---------- 179 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 +RG L ++DE +A + G R + LL D A Sbjct: 180 ---------ERGYGQRKLNISDEMLNRLAQAADGDARRSLNLLEIAADLA 220 >gi|330998553|ref|ZP_08322373.1| ATPase, AAA family protein [Paraprevotella xylaniphila YIT 11841] gi|329568151|gb|EGG49970.1| ATPase, AAA family protein [Paraprevotella xylaniphila YIT 11841] Length = 423 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I++ + + + GPPG+GKTTLAQ++A +L Sbjct: 9 LRPQTLDDYIGQKHLVGPDAVLRKMIDSGR-----ISSFILWGPPGVGKTTLAQIIAHKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVREVIEKARNNRFFTQASPILFIDEIHRFSKSQQDSLLGAVEQ 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GTVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|307326777|ref|ZP_07605969.1| AAA ATPase central domain protein [Streptomyces violaceusniger Tu 4113] gi|306887540|gb|EFN18534.1| AAA ATPase central domain protein [Streptomyces violaceusniger Tu 4113] Length = 462 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ + V+ GPPG+GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLRPGSPLRRLVGEGGGGPAGPSSVILWGPPGIGKTTLAYVVSQAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALL------TNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ + RD VLF+DEIHR S ++ L PA+E+ Sbjct: 87 QKRFVELSA-ITAGVKEVRAVIDGARRSSGAYGRDTVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|254467160|ref|ZP_05080571.1| AAA ATPase, central region [Rhodobacterales bacterium Y4I] gi|206688068|gb|EDZ48550.1| AAA ATPase, central region [Rhodobacterales bacterium Y4I] Length = 440 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L E GQ + + L V + + +L ++F GPPG+GKTT+A+++A+E Sbjct: 28 LRPQSLGEVIGQAQVLGPEAPLGVMLASG-----SLSSLIFWGPPGVGKTTIARLLAKET 82 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 83 DLHFVQISAIFTGVPELRKVFEAARIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 142 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 143 I-LLVGATTENPSFELN 158 >gi|117928540|ref|YP_873091.1| recombination factor protein RarA [Acidothermus cellulolyticus 11B] gi|117649003|gb|ABK53105.1| Recombination protein MgsA [Acidothermus cellulolyticus 11B] Length = 500 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 99/218 (45%), Gaps = 46/218 (21%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT++EF GQ + + L+ ++ +A A +L L GPPG GKTTLA +V+ Sbjct: 39 MRPRTIDEFVGQQHLLAPGTPLRRLLDDPQATAPSL---LLWGPPGSGKTTLAYLVSHAS 95 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 G F S V A D+ ++ VLF+DE+HR S ++ L PA+E+ Sbjct: 96 GRRFVELSA-VAAGVKDVRDVIAAARRERAASGRGTVLFLDEVHRFSKAQQDSLLPAVEN 154 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 + L+ E PS + LSR L L PL D ++L+ Sbjct: 155 GIVTLIGATTENPSFSVIGPLLSRAVL--------LTLQPLSD-------------DELR 193 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 T+++R AV D +A R TP RL+R Sbjct: 194 TVIRR-------AVVDPRG--LAGRHTLTPAAEERLIR 222 >gi|229543727|ref|ZP_04432787.1| AAA ATPase central domain protein [Bacillus coagulans 36D1] gi|229328147|gb|EEN93822.1| AAA ATPase central domain protein [Bacillus coagulans 36D1] Length = 425 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E GQ K+ KAR L ++ GPPG+GKT++A +A Sbjct: 10 MRPRTIDEVIGQEHLVGKNKIIYRMVKARQ--LSSMILYGPPGVGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR+ + K ++ A + + +L +DE+HRL ++ L P +E Sbjct: 68 FRTLNAVTNNKKDMEIVAAEAKMSGKVILLLDEVHRLDKAKQDFLLPYLE 117 >gi|90417739|ref|ZP_01225651.1| ATPase, AAA family [Aurantimonas manganoxydans SI85-9A1] gi|90337411|gb|EAS51062.1| ATPase, AAA family [Aurantimonas manganoxydans SI85-9A1] Length = 452 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E GQ V +A +L ++F GPPG GKTT+A+++A E+ Sbjct: 37 LRPRQLGEVVGQEHLTGEGGVLSRMLEA--TSLGSMIFWGPPGTGKTTVARLLAHEVDYA 94 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + ++ P MED + Sbjct: 95 FEQISA-IFSGVADLKKMFETARLRRSNGRRTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 152 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 153 VLVGATTENPSFELN 167 >gi|315101311|gb|EFT73287.1| recombination factor protein RarA [Propionibacterium acnes HL046PA1] Length = 462 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ + S L+ E A + V GPPG+GKTT+A VV+ Sbjct: 36 LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ L L VLF+DE+HR S +++L PA+E+ Sbjct: 91 NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 150 TVTLIAATTENPS 162 >gi|312868718|ref|ZP_07728910.1| ATPase, AAA family [Lactobacillus oris PB013-T2-3] gi|311095704|gb|EFQ53956.1| ATPase, AAA family [Lactobacillus oris PB013-T2-3] Length = 434 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEE GQ K+ KAR L ++ GPPG GKT++A +A Sbjct: 9 MRPRTLEEVVGQQHLVGPGKIIARMVKARM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DEIHRL ++ L P +E ++ +++G Sbjct: 67 FRKLNAATDSKKDLQVVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI-VLIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYISIN 135 >gi|282853871|ref|ZP_06263208.1| recombination factor protein RarA [Propionibacterium acnes J139] gi|282583324|gb|EFB88704.1| recombination factor protein RarA [Propionibacterium acnes J139] gi|314923565|gb|EFS87396.1| recombination factor protein RarA [Propionibacterium acnes HL001PA1] gi|314966611|gb|EFT10710.1| recombination factor protein RarA [Propionibacterium acnes HL082PA2] gi|314981339|gb|EFT25433.1| recombination factor protein RarA [Propionibacterium acnes HL110PA3] gi|315092200|gb|EFT64176.1| recombination factor protein RarA [Propionibacterium acnes HL110PA4] gi|315092867|gb|EFT64843.1| recombination factor protein RarA [Propionibacterium acnes HL060PA1] gi|315103612|gb|EFT75588.1| recombination factor protein RarA [Propionibacterium acnes HL050PA2] gi|327327434|gb|EGE69210.1| replication-associated recombination protein A [Propionibacterium acnes HL103PA1] Length = 461 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ + S L+ E A + V GPPG+GKTT+A VV+ Sbjct: 35 LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ L L VLF+DE+HR S +++L PA+E+ Sbjct: 90 NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 148 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 149 TVTLIAATTENPS 161 >gi|78778465|ref|YP_396577.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT 9312] gi|78711964|gb|ABB49141.1| Recombination protein MgsA [Prochlorococcus marinus str. MIT 9312] Length = 429 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 25/174 (14%) Query: 2 MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M E L + N SQ +++ L LRP+ L++F GQ ++ N + +A + + + + Sbjct: 1 MHSENLFT-NYSQIESNAPLADKLRPKNLDDFFGQ-KSILNENSLLRSAILN-DKISNFI 57 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL----------LTNLEDRDV 108 F GPPG+GKTTL +++A N RS + A + L L N + + + Sbjct: 58 FSGPPGVGKTTLIEIIA----FNTRSKLIKLNAVLSSIKELRNEIANAKERLINTKRKTI 113 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLI 157 LFIDE+HR + + ++ L P++E+ + + E P K +SR FTLI Sbjct: 114 LFIDEVHRFTSVQQDALLPSIENGTITFIGATTENPFFAVNKALVSRSRIFTLI 167 >gi|254881703|ref|ZP_05254413.1| recombination factor protein RarA [Bacteroides sp. 4_3_47FAA] gi|319643669|ref|ZP_07998286.1| AAA family ATPase [Bacteroides sp. 3_1_40A] gi|254834496|gb|EET14805.1| recombination factor protein RarA [Bacteroides sp. 4_3_47FAA] gi|317384699|gb|EFV65661.1| AAA family ATPase [Bacteroides sp. 3_1_40A] Length = 425 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 9 LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVET 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|239978419|ref|ZP_04700943.1| recombination factor protein RarA [Streptomyces albus J1074] gi|291450315|ref|ZP_06589705.1| recombination factor protein RarA [Streptomyces albus J1074] gi|291353264|gb|EFE80166.1| recombination factor protein RarA [Streptomyces albus J1074] Length = 454 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + V GPPG+GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLKPGSPLRRLVGEGGGGPAGPSSVFLWGPPGIGKTTLAYVVSKAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 87 NKRFVELSA-ITAGVKEVRAVIDGARRASGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|254459950|ref|ZP_05073366.1| AAA ATPase, central region [Rhodobacterales bacterium HTCC2083] gi|206676539|gb|EDZ41026.1| AAA ATPase, central region [Rhodobacteraceae bacterium HTCC2083] Length = 436 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L E GQ + L+V + + +L ++F GPPG+GKTT+A+++A E Sbjct: 24 LRPQSLAEVIGQKQVLGEGAPLEVMLSSG-----SLSSIVFWGPPGVGKTTIARLLAHET 78 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 79 ELHFVQISAIFTGMPDLRKVFEGAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPYMEDGT 138 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 139 I-LLVGATTENPSFELN 154 >gi|322419817|ref|YP_004199040.1| AAA ATPase central domain-containing protein [Geobacter sp. M18] gi|320126204|gb|ADW13764.1| AAA ATPase central domain protein [Geobacter sp. M18] Length = 434 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 117/265 (44%), Gaps = 51/265 (19%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT+ E+ GQ L+ IE + + ++F GPPG GKTTLA+++A Sbjct: 18 MRPRTISEYLGQGHLLGEGKLLRSLIETDR-----VTSLIFWGPPGSGKTTLARIIAGAT 72 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME- 130 +F S +++ ++ ++ E+ R +LF+DEIHR + ++ P +E Sbjct: 73 KSHFIFFSA-IMSGIKEIREVVKEAEETLKYHGRRTILFVDEIHRFNKSQQDAFLPYVER 131 Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 F + E PS + LSR + L+ NPL + E+++ Sbjct: 132 GTFTMIGATTENPSFEVIAPLLSRCKV--------LVLNPLSE-------------EEIR 170 Query: 190 TIVQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 I+Q RG + L EA +A ++ G R+A L + A +A + IT Sbjct: 171 QILQNALTDRERGLGESELTAAPEALAFMAEQAGGDARVA---LNTLETAARLARDREIT 227 Query: 243 REIADAALLR--LAIDKMGFDQLDL 265 E A A + L DK G + ++ Sbjct: 228 LETAREASQKKPLLYDKGGEEHYNV 252 >gi|229495215|ref|ZP_04388950.1| ATPase, AAA family [Porphyromonas endodontalis ATCC 35406] gi|229317658|gb|EEN83556.1| ATPase, AAA family [Porphyromonas endodontalis ATCC 35406] Length = 458 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 21/147 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TLEE+ GQ V + L I + K + ++ GPPG+GKTTLA+++A+ + Sbjct: 33 MRPTTLEEYVGQRHIVAETAPLGRMIRSGK-----VPSLILWGPPGVGKTTLAELIAQSV 87 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE----------DRDVLFIDEIHRLSIIVEEILYPA 128 F S V + GD+ +L E R +LFIDEIHR S ++ L A Sbjct: 88 EAPFYKLSA-VGSGVGDVRRVLEEAERSTQGFFAAKSRPLLFIDEIHRFSKSQQDSLLAA 146 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSR 153 +E + L+ E PS ++ LSR Sbjct: 147 VERGIVTLIGATTENPSFEVIRPLLSR 173 >gi|306836214|ref|ZP_07469198.1| replication-associated recombination protein A [Corynebacterium accolens ATCC 49726] gi|304567935|gb|EFM43516.1| replication-associated recombination protein A [Corynebacterium accolens ATCC 49726] Length = 461 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TLEE GQ K + EA V+ GPPG GKTT+A ++A ++G N Sbjct: 44 MRPQTLEEVVGQDHLLGPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIASQMGQN 101 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + + ++T+ R VLFIDE+HR S ++ L A+E+ + Sbjct: 102 FVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVENRTVL 160 Query: 136 LMVG--EGPS 143 L+ E PS Sbjct: 161 LVAATTENPS 170 >gi|256028561|ref|ZP_05442395.1| recombination factor protein RarA [Fusobacterium sp. D11] gi|289766481|ref|ZP_06525859.1| ATPase [Fusobacterium sp. D11] gi|289718036|gb|EFD82048.1| ATPase [Fusobacterium sp. D11] Length = 407 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 41/214 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L++F GQ + V L + +F GPPG GK++L ++++ L N Sbjct: 18 LRPKSLDDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGCGKSSLGEIISNTLDCN 75 Query: 82 FRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + A D+ ++ N+E R +LF+DEIHR + ++ L ED L Sbjct: 76 FEKLNATT-ASVSDIRNVVETARRNIELYNKRTILFLDEIHRFNKNQQDALLSYTEDGTL 134 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDL 188 TLI ATT NP + + R+ +E ED+ Sbjct: 135 --------------------TLIGATTE-----NPYYNINNALLSRVMVFEFKALTNEDI 169 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 ++ +G ++++D+ I S+G RIA Sbjct: 170 LKLINKGLNFLNISMSDKIKEIIVDISQGDSRIA 203 >gi|314931757|gb|EFS95588.1| recombination factor protein RarA [Propionibacterium acnes HL067PA1] Length = 462 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ + S L+ E A + V GPPG+GKTT+A VV+ Sbjct: 36 LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ L L VLF+DE+HR S +++L PA+E+ Sbjct: 91 NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 150 TVTLIAATTENPS 162 >gi|313764302|gb|EFS35666.1| recombination factor protein RarA [Propionibacterium acnes HL013PA1] gi|313816210|gb|EFS53924.1| recombination factor protein RarA [Propionibacterium acnes HL059PA1] gi|314915292|gb|EFS79123.1| recombination factor protein RarA [Propionibacterium acnes HL005PA4] gi|314918158|gb|EFS81989.1| recombination factor protein RarA [Propionibacterium acnes HL050PA1] gi|314920234|gb|EFS84065.1| recombination factor protein RarA [Propionibacterium acnes HL050PA3] gi|314955559|gb|EFS99960.1| recombination factor protein RarA [Propionibacterium acnes HL027PA1] gi|314958054|gb|EFT02157.1| recombination factor protein RarA [Propionibacterium acnes HL002PA1] gi|315098686|gb|EFT70662.1| recombination factor protein RarA [Propionibacterium acnes HL059PA2] gi|315108666|gb|EFT80642.1| recombination factor protein RarA [Propionibacterium acnes HL030PA2] gi|327330408|gb|EGE72157.1| replication-associated recombination protein A [Propionibacterium acnes HL097PA1] gi|327450630|gb|EGE97284.1| recombination factor protein RarA [Propionibacterium acnes HL087PA3] gi|327454032|gb|EGF00687.1| recombination factor protein RarA [Propionibacterium acnes HL083PA2] gi|328753290|gb|EGF66906.1| recombination factor protein RarA [Propionibacterium acnes HL025PA2] gi|328754048|gb|EGF67664.1| recombination factor protein RarA [Propionibacterium acnes HL087PA1] Length = 462 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ + S L+ E A + V GPPG+GKTT+A VV+ Sbjct: 36 LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ L L VLF+DE+HR S +++L PA+E+ Sbjct: 91 NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 150 TVTLIAATTENPS 162 >gi|237744015|ref|ZP_04574496.1| ATPase [Fusobacterium sp. 7_1] gi|260494399|ref|ZP_05814530.1| ATPase [Fusobacterium sp. 3_1_33] gi|229431244|gb|EEO41456.1| ATPase [Fusobacterium sp. 7_1] gi|260198545|gb|EEW96061.1| ATPase [Fusobacterium sp. 3_1_33] Length = 407 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 41/214 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L++F GQ + V L + +F GPPG GK++L ++++ L N Sbjct: 18 LRPKSLDDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGCGKSSLGEIISNTLDCN 75 Query: 82 FRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + A D+ ++ N+E R +LF+DEIHR + ++ L ED L Sbjct: 76 FEKLNATT-ASVSDIRNVVETARRNIELYNKRTILFLDEIHRFNKNQQDALLSYTEDGTL 134 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDL 188 TLI ATT NP + + R+ +E ED+ Sbjct: 135 --------------------TLIGATTE-----NPYYNINNALLSRVMVFEFKALTNEDI 169 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 ++ +G ++++D+ I S+G RIA Sbjct: 170 LKLINKGLNFLNISMSDKIKEIIVDISQGDSRIA 203 >gi|307260915|ref|ZP_07542601.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869482|gb|EFN01273.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 443 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +R RTL E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 16 MRSRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 70 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 71 DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 130 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A +LTN L D+ Sbjct: 131 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 177 >gi|304373330|ref|YP_003856539.1| ATPase family associated with various cellular activities [Mycoplasma hyorhinis HUB-1] gi|304309521|gb|ADM22001.1| ATPase family associated with various cellular activities [Mycoplasma hyorhinis HUB-1] Length = 405 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 9/109 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP LEEF GQ + L+ I+ + +F GP G GKT+LA ++A+ L + Sbjct: 6 LRPENLEEFVGQPHLRTLLEKLIQTQDKSS-----FIFYGPSGTGKTSLAILLAKNLNLK 60 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + + K+ LL ++D V+ IDE+HRL+ ++IL +E Sbjct: 61 FDIFNATIENKSD----LLQKIKDNQVVIIDEVHRLNKDKQDILLSHLE 105 >gi|154253206|ref|YP_001414030.1| recombination factor protein RarA [Parvibaculum lavamentivorans DS-1] gi|154157156|gb|ABS64373.1| AAA ATPase central domain protein [Parvibaculum lavamentivorans DS-1] Length = 434 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE GQ E K + A+ L V+F GPPG GKTT+A+++A +G++ Sbjct: 22 LRPKVLEEVVGQ-EHLIGPKGPLGRMLAQGH-LSSVIFWGPPGTGKTTIARLLADRVGLH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + ++ P MED + Sbjct: 80 FEPMSA-IFSGVADLKKIFEAARGRRSTGKGTLLFVDEIHRFNRAQQDSFLPVMEDGTVT 138 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 139 LVGATTENPS 148 >gi|321264368|ref|XP_003196901.1| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein 1) [Cryptococcus gattii WM276] gi|317463379|gb|ADV25114.1| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein 1), putative [Cryptococcus gattii WM276] Length = 627 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 22/154 (14%) Query: 23 RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP + ++ GQ V S L+V IEA K + + GPPG GKTTLA+++A+ G Sbjct: 147 RPLEISQYIGQSDIVGPGSLLRVQIEAGKL----IGSCILWGPPGCGKTTLARLIAKSSG 202 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 +F+ S + D+ + ++ R VL IDEIHR + +++L P +E Sbjct: 203 ADFKELSA-TSSGTQDVRQVFEKAKNGLQMTGRRTVLMIDEIHRFNRAQQDLLLPYVEKG 261 Query: 133 QLDLMVGEGPSARSVKIN---LSR---FTLIAAT 160 + L +G S K+N LSR FTL A + Sbjct: 262 WIQL-IGATTENPSFKVNGALLSRCQVFTLHAHS 294 >gi|313771979|gb|EFS37945.1| recombination factor protein RarA [Propionibacterium acnes HL074PA1] gi|313810179|gb|EFS47900.1| recombination factor protein RarA [Propionibacterium acnes HL083PA1] gi|313830510|gb|EFS68224.1| recombination factor protein RarA [Propionibacterium acnes HL007PA1] gi|313833546|gb|EFS71260.1| recombination factor protein RarA [Propionibacterium acnes HL056PA1] gi|314973510|gb|EFT17606.1| recombination factor protein RarA [Propionibacterium acnes HL053PA1] gi|314976190|gb|EFT20285.1| recombination factor protein RarA [Propionibacterium acnes HL045PA1] gi|314983788|gb|EFT27880.1| recombination factor protein RarA [Propionibacterium acnes HL005PA1] gi|315096057|gb|EFT68033.1| recombination factor protein RarA [Propionibacterium acnes HL038PA1] gi|327326337|gb|EGE68127.1| replication-associated recombination protein A [Propionibacterium acnes HL096PA2] gi|327445769|gb|EGE92423.1| recombination factor protein RarA [Propionibacterium acnes HL043PA2] gi|327448248|gb|EGE94902.1| recombination factor protein RarA [Propionibacterium acnes HL043PA1] gi|328760701|gb|EGF74267.1| replication-associated recombination protein A [Propionibacterium acnes HL099PA1] Length = 462 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ + S L+ E A + V GPPG+GKTT+A VV+ Sbjct: 36 LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ L L VLF+DE+HR S +++L PA+E+ Sbjct: 91 NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 150 TVTLIAATTENPS 162 >gi|289425515|ref|ZP_06427292.1| recombination factor protein RarA [Propionibacterium acnes SK187] gi|289428610|ref|ZP_06430294.1| recombination factor protein RarA [Propionibacterium acnes J165] gi|289154493|gb|EFD03181.1| recombination factor protein RarA [Propionibacterium acnes SK187] gi|289158304|gb|EFD06523.1| recombination factor protein RarA [Propionibacterium acnes J165] gi|313791989|gb|EFS40090.1| recombination factor protein RarA [Propionibacterium acnes HL110PA1] gi|313802061|gb|EFS43295.1| recombination factor protein RarA [Propionibacterium acnes HL110PA2] gi|313807672|gb|EFS46159.1| recombination factor protein RarA [Propionibacterium acnes HL087PA2] gi|313812793|gb|EFS50507.1| recombination factor protein RarA [Propionibacterium acnes HL025PA1] gi|313818709|gb|EFS56423.1| recombination factor protein RarA [Propionibacterium acnes HL046PA2] gi|313820479|gb|EFS58193.1| recombination factor protein RarA [Propionibacterium acnes HL036PA1] gi|313822715|gb|EFS60429.1| recombination factor protein RarA [Propionibacterium acnes HL036PA2] gi|313825351|gb|EFS63065.1| recombination factor protein RarA [Propionibacterium acnes HL063PA1] gi|313838882|gb|EFS76596.1| recombination factor protein RarA [Propionibacterium acnes HL086PA1] gi|314925088|gb|EFS88919.1| recombination factor protein RarA [Propionibacterium acnes HL036PA3] gi|314960375|gb|EFT04477.1| recombination factor protein RarA [Propionibacterium acnes HL002PA2] gi|314962645|gb|EFT06745.1| recombination factor protein RarA [Propionibacterium acnes HL082PA1] gi|314987969|gb|EFT32060.1| recombination factor protein RarA [Propionibacterium acnes HL005PA2] gi|314989779|gb|EFT33870.1| recombination factor protein RarA [Propionibacterium acnes HL005PA3] gi|315077861|gb|EFT49912.1| recombination factor protein RarA [Propionibacterium acnes HL053PA2] gi|315080486|gb|EFT52462.1| recombination factor protein RarA [Propionibacterium acnes HL078PA1] gi|315084157|gb|EFT56133.1| recombination factor protein RarA [Propionibacterium acnes HL027PA2] gi|315085500|gb|EFT57476.1| recombination factor protein RarA [Propionibacterium acnes HL002PA3] gi|315088443|gb|EFT60419.1| recombination factor protein RarA [Propionibacterium acnes HL072PA1] gi|315105746|gb|EFT77722.1| recombination factor protein RarA [Propionibacterium acnes HL030PA1] gi|327331788|gb|EGE73525.1| replication-associated recombination protein A [Propionibacterium acnes HL096PA3] gi|327443565|gb|EGE90219.1| recombination factor protein RarA [Propionibacterium acnes HL013PA2] gi|327453292|gb|EGE99946.1| recombination factor protein RarA [Propionibacterium acnes HL092PA1] gi|328753320|gb|EGF66936.1| recombination factor protein RarA [Propionibacterium acnes HL020PA1] gi|332675579|gb|AEE72395.1| AAA domain-containing protein [Propionibacterium acnes 266] Length = 462 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ + S L+ E A + V GPPG+GKTT+A VV+ Sbjct: 36 LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ L L VLF+DE+HR S +++L PA+E+ Sbjct: 91 NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 150 TVTLIAATTENPS 162 >gi|260888003|ref|ZP_05899266.1| replication-associated recombination protein A [Selenomonas sputigena ATCC 35185] gi|260862254|gb|EEX76754.1| replication-associated recombination protein A [Selenomonas sputigena ATCC 35185] Length = 450 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 20/159 (12%) Query: 2 MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAE-ALDHV 57 M++E L R V D+ L +RP++L ++ GQ K+ K AE + + Sbjct: 11 MEQESLFRREV-----DLPLAARMRPKSLADYVGQQHLVGKGKML---RKLIAEDKIFSM 62 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111 +F GPPG+GKTTLA+++ARE F S V + ++ ++ E +R +LF+ Sbjct: 63 IFWGPPGVGKTTLARIIARETKARFIDFSA-VTSGIKEIRTVMQEAEKNTAYGERTILFV 121 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 DEIHR + ++ P +E + +++G S +IN Sbjct: 122 DEIHRFNKAQQDAFLPFVEKGSI-ILIGATTENPSFEIN 159 >gi|104781339|ref|YP_607837.1| recombination factor protein RarA [Pseudomonas entomophila L48] gi|95110326|emb|CAK15033.1| DNA-dependant ATPase [Pseudomonas entomophila L48] Length = 441 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRPSNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQFCDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|314978649|gb|EFT22743.1| recombination factor protein RarA [Propionibacterium acnes HL072PA2] Length = 462 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ + S L+ E A + V GPPG+GKTT+A VV+ Sbjct: 36 LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ L L VLF+DE+HR S +++L PA+E+ Sbjct: 91 NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 150 TVTLIAATTENPS 162 >gi|314967490|gb|EFT11589.1| recombination factor protein RarA [Propionibacterium acnes HL037PA1] Length = 462 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ + S L+ E A + V GPPG+GKTT+A VV+ Sbjct: 36 LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ L L VLF+DE+HR S +++L PA+E+ Sbjct: 91 NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 150 TVTLIAATTENPS 162 >gi|295130734|ref|YP_003581397.1| recombination factor protein RarA [Propionibacterium acnes SK137] gi|291376409|gb|ADE00264.1| recombination factor protein RarA [Propionibacterium acnes SK137] Length = 461 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ + S L+ E A + V GPPG+GKTT+A VV+ Sbjct: 35 LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ L L VLF+DE+HR S +++L PA+E+ Sbjct: 90 NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 148 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 149 TVTLIAATTENPS 161 >gi|332521647|ref|ZP_08398100.1| AAA ATPase central domain protein [Lacinutrix algicola 5H-3-7-4] gi|332042736|gb|EGI78936.1| AAA ATPase central domain protein [Lacinutrix algicola 5H-3-7-4] Length = 425 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 36/185 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TLE++ Q + + + + + ++ GPPG+GKTTLA ++A E Sbjct: 9 LRPKTLEDYVSQSQLVGKQGALTK--QIQQGLIPSIILWGPPGIGKTTLANIIANESKRP 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VI KA L T +LFIDEIHR S ++ L A+E Sbjct: 67 FYTLSAISSGVKDVREVIEKAKQSGGLFTT--KNPILFIDEIHRFSKSQQDSLLQAVEKG 124 Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + L+ E PS + LSR + LN +E +DL+ Sbjct: 125 WVTLIGATTENPSFEVIPALLSRCQVYI---------------------LNAFEKKDLEL 163 Query: 191 IVQRG 195 ++QR Sbjct: 164 LLQRA 168 >gi|212691432|ref|ZP_03299560.1| hypothetical protein BACDOR_00924 [Bacteroides dorei DSM 17855] gi|237726280|ref|ZP_04556761.1| recombination factor protein RarA [Bacteroides sp. D4] gi|212666042|gb|EEB26614.1| hypothetical protein BACDOR_00924 [Bacteroides dorei DSM 17855] gi|229434806|gb|EEO44883.1| recombination factor protein RarA [Bacteroides dorei 5_1_36/D4] Length = 425 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 9 LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVET 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|300727152|ref|ZP_07060571.1| ATPase, AAA family [Prevotella bryantii B14] gi|299775696|gb|EFI72287.1| ATPase, AAA family [Prevotella bryantii B14] Length = 423 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 22/149 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E+ GQ V + L+ I+A + + + GPPG+GKTTLA ++A +L Sbjct: 9 MRPRTLDEYVGQKHLVGEGAVLRNMIDAGR-----IPSFILWGPPGVGKTTLAHIIANKL 63 Query: 79 GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F + TSG VI KA T +LFIDEIHR S ++ L A+ Sbjct: 64 ETPFYTLSAVTSGVKDVREVIDKAAKSQFFNTI---SPILFIDEIHRFSKSQQDSLLGAV 120 Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTL 156 E + L+ E PS ++ LSR L Sbjct: 121 ERGTVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|50842656|ref|YP_055883.1| recombination factor protein RarA [Propionibacterium acnes KPA171202] gi|50840258|gb|AAT82925.1| uncharacterized ATPase related to the helicase subunit of the holliday junction resolvase [Propionibacterium acnes KPA171202] Length = 461 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ + S L+ E A + V GPPG+GKTT+A VV+ Sbjct: 35 LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ L L VLF+DE+HR S +++L PA+E+ Sbjct: 90 NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 148 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 149 TVTLIAATTENPS 161 >gi|150006392|ref|YP_001301136.1| recombination factor protein RarA [Bacteroides vulgatus ATCC 8482] gi|149934816|gb|ABR41514.1| putative ATPase, AAA family [Bacteroides vulgatus ATCC 8482] Length = 425 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 9 LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVET 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|226944894|ref|YP_002799967.1| recombination factor protein RarA [Azotobacter vinelandii DJ] gi|226719821|gb|ACO78992.1| recombination factor protein RarA [Azotobacter vinelandii DJ] Length = 441 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRPASLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVTDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETISAVLAGVKEIRQAVEIARQQAAQHGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|237712129|ref|ZP_04542610.1| recombination factor protein RarA [Bacteroides sp. 9_1_42FAA] gi|229453450|gb|EEO59171.1| recombination factor protein RarA [Bacteroides sp. 9_1_42FAA] Length = 425 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 9 LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVET 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|238926943|ref|ZP_04658703.1| recombination ATPase [Selenomonas flueggei ATCC 43531] gi|238885177|gb|EEQ48815.1| recombination ATPase [Selenomonas flueggei ATCC 43531] Length = 447 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 19/159 (11%) Query: 2 MDREG-LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHV 57 MD +G L +R Q A+ +RPRTL++F GQ K+ IE+ + + + Sbjct: 3 MDEQGRLFARAAYQPLAE--RVRPRTLDDFVGQEHLLGQGKILRRLIESDR-----ITSM 55 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111 +F GPPG+GKTTLAQ++A F + S V + ++ ++ + +R V+F+ Sbjct: 56 IFWGPPGVGKTTLAQIIAARTKAEFITFSA-VTSGIKEIRTVMQEADRRRMYGERIVVFV 114 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 DEIHR + ++ P +E + +++G S +IN Sbjct: 115 DEIHRFNKAQQDAFLPFVEKGSI-VLIGATTENPSFEIN 152 >gi|330838519|ref|YP_004413099.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC 35185] gi|329746283|gb|AEB99639.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC 35185] Length = 442 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 20/159 (12%) Query: 2 MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAE-ALDHV 57 M++E L R V D+ L +RP++L ++ GQ K+ K AE + + Sbjct: 3 MEQESLFRREV-----DLPLAARMRPKSLADYVGQQHLVGKGKML---RKLIAEDKIFSM 54 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111 +F GPPG+GKTTLA+++ARE F S V + ++ ++ E +R +LF+ Sbjct: 55 IFWGPPGVGKTTLARIIARETKARFIDFSA-VTSGIKEIRTVMQEAEKNTAYGERTILFV 113 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 DEIHR + ++ P +E + +++G S +IN Sbjct: 114 DEIHRFNKAQQDAFLPFVEKGSI-ILIGATTENPSFEIN 151 >gi|260593081|ref|ZP_05858539.1| ATPase, AAA family [Prevotella veroralis F0319] gi|260534967|gb|EEX17584.1| ATPase, AAA family [Prevotella veroralis F0319] Length = 400 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E+ GQ V + L+ I++ + + GPPG+GKTTLAQ++A +L Sbjct: 8 MRPRTLDEYIGQEHLVGQGAVLRRMIDSGH-----ISSFILWGPPGVGKTTLAQIIAHQL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIERAKSGRFFNSVSPILFIDEIHRFSKSQQDSLLGAVER 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GVVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|326329811|ref|ZP_08196131.1| ATPase, AAA family [Nocardioidaceae bacterium Broad-1] gi|325952397|gb|EGD44417.1| ATPase, AAA family [Nocardioidaceae bacterium Broad-1] Length = 448 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 14/125 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTLEE GQ A S L +E ++ + +L GPPG GKTT+A +V+R Sbjct: 32 MRPRTLEELVGQSSLRAAGSPLHQVVEGGQSLS-----LLLWGPPGTGKTTIASIVSRST 86 Query: 79 GVNFRSTSG------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A A L VLF+DE+HR S ++ L P +E+ Sbjct: 87 DRRFVEISAVSAGVKEVRAAIDSARAELVATGKETVLFVDEVHRFSKAQQDALLPGVENR 146 Query: 133 QLDLM 137 + L+ Sbjct: 147 WVTLV 151 >gi|325856575|ref|ZP_08172242.1| ATPase, AAA family [Prevotella denticola CRIS 18C-A] gi|325483423|gb|EGC86397.1| ATPase, AAA family [Prevotella denticola CRIS 18C-A] Length = 406 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+++ GQ V + L+ I++ + + + GPPG+GKTTLAQ++A L Sbjct: 8 MRPRTLDDYIGQQHLVGEGAVLRRMIDSGR-----IASFILWGPPGVGKTTLAQIIAHRL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ ++ +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVRDVIERAQNGRFFNSASPILFIDEIHRFSKSQQDSLLGAVEK 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|282866228|ref|ZP_06275275.1| AAA ATPase central domain protein [Streptomyces sp. ACTE] gi|282559012|gb|EFB64567.1| AAA ATPase central domain protein [Streptomyces sp. ACTE] Length = 431 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + A V+ GPPG GKTTLA VV++ Sbjct: 1 MRPRTLDEVVGQQHLLKPGSPLRRLVGEAGGGPAGPSSVILWGPPGTGKTTLAYVVSKAT 60 Query: 79 GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 61 NKRFVELSA-ITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 119 Query: 132 FQLDLMV 138 + L+ Sbjct: 120 RWVTLIA 126 >gi|256845830|ref|ZP_05551288.1| ATPase [Fusobacterium sp. 3_1_36A2] gi|256719389|gb|EEU32944.1| ATPase [Fusobacterium sp. 3_1_36A2] Length = 407 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 41/230 (17%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L +N + LRP++LE+F GQ + V L + +F GPPG Sbjct: 2 NLFQKNYKNVEPLAYKLRPKSLEDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGC 59 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLS 118 GK++L ++++ L NF + A D+ ++ N+E R +LF+DEIHR + Sbjct: 60 GKSSLGEIISNTLDCNFEKLNATT-ASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIP 177 ++ L ED L TLI ATT NP + + Sbjct: 119 KNQQDALLSYTEDGTL--------------------TLIGATTE-----NPYYNINNALL 153 Query: 178 IRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 R+ +E +D+ ++ +G ++++D+ I S+G RIA Sbjct: 154 SRVMVFEFKALTNKDILKLINKGLNFLNISMSDKIKEIIVDISQGDSRIA 203 >gi|294628351|ref|ZP_06706911.1| AAA family ATPase [Streptomyces sp. e14] gi|292831684|gb|EFF90033.1| AAA family ATPase [Streptomyces sp. e14] Length = 451 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 87 NKRFVELSA-ITAGVKEVRAVIDGARRATGGYGQETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|320011904|gb|ADW06754.1| AAA ATPase central domain protein [Streptomyces flavogriseus ATCC 33331] Length = 457 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLKPGSPLRRLVGEGGGGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 87 NKRFVELSA-ITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|83590492|ref|YP_430501.1| recombination factor protein RarA [Moorella thermoacetica ATCC 39073] gi|83573406|gb|ABC19958.1| Recombination protein MgsA [Moorella thermoacetica ATCC 39073] Length = 441 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ + + A ++ ++L ++ GPPG GKTTLA+++A + Sbjct: 22 MRPRTLDEFVGQEKIIGPGTLLRRAIES--DSLTSIILWGPPGSGKTTLARIIATMTRAH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + + V+ D+ ++ +R+ V+F+DEIHR + +++ L P +E+ Sbjct: 80 FEALNA-VLDGINDIRRVIAAAREREKYYQQKTVIFVDEIHRWAKNIQDALLPCVEE 135 >gi|220932040|ref|YP_002508948.1| AAA ATPase central domain protein [Halothermothrix orenii H 168] gi|219993350|gb|ACL69953.1| AAA ATPase central domain protein [Halothermothrix orenii H 168] Length = 450 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 11/141 (7%) Query: 6 GLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62 L +N D + L +RP L+EF GQ + K A +A + + ++ GP Sbjct: 5 NLFEQNSESNDKNRPLAYRMRPGNLDEFYGQEDVIGPGKPLRRAIEA--DRVQSLILYGP 62 Query: 63 PGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED-RDVLFIDEIHR 116 PG GKT+LAQV+AR+ + +N ++ I + D A+ +L + +LFIDEIHR Sbjct: 63 PGCGKTSLAQVIARKTEGKFIRINAVTSGVSKIREVIDKASKNRSLHGIKTILFIDEIHR 122 Query: 117 LSIIVEEILYPAMEDFQLDLM 137 + ++ L PA+E + L+ Sbjct: 123 FNKSQQDALLPAVESGTITLI 143 >gi|86135798|ref|ZP_01054377.1| ATPase, AAA family protein [Roseobacter sp. MED193] gi|85826672|gb|EAQ46868.1| ATPase, AAA family protein [Roseobacter sp. MED193] Length = 439 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 24/227 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L E GQ + + +L ++F GPPG+GKTT+A+++A+E ++ Sbjct: 27 LRPRSLSEVIGQAQVLGEEAPL--GVMLSSGSLSSLIFWGPPGVGKTTIARLLAQETDLH 84 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F S P + K + A + +LF+DEIHR + ++ P MED + L Sbjct: 85 FVQISAIFTGVPDLRKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPYMEDGTI-L 143 Query: 137 MVG---EGPS--------ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 +VG E PS +RS + L R +L+ + LLT + G + L+ E Sbjct: 144 LVGATTENPSFELNAAVLSRSQVLVLERLSLV----DLELLTQRAERELGKALPLSG-EA 198 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 D + G T L + ++ A G +A RL+RR + Sbjct: 199 RDALHEMADGDGRTLLNLIEQVAAWRVATPLGREALATRLMRRAAKY 245 >gi|254383601|ref|ZP_04998951.1| ATP/GTP binding protein [Streptomyces sp. Mg1] gi|194342496|gb|EDX23462.1| ATP/GTP binding protein [Streptomyces sp. Mg1] Length = 451 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + V+ GPPG+GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGASSVILWGPPGIGKTTLAYVVSQAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ + VLF+DEIHR S ++ L PA+E+ Sbjct: 87 QKRFVELSA-ITAGVKEVRAVIEGAKRAAGGYGKETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|119356781|ref|YP_911425.1| recombination factor protein RarA [Chlorobium phaeobacteroides DSM 266] gi|119354130|gb|ABL65001.1| Recombination protein MgsA [Chlorobium phaeobacteroides DSM 266] Length = 446 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 21/161 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL++ GQ V + L+ F+ + + ++F GPPG GKTTLA + A L Sbjct: 31 MRPRTLDDIMGQDHLVGRDAPLRRFLASGQ-----FPSMIFWGPPGSGKTTLAGICASSL 85 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S + + ++ L N E R +LFIDEIHR + ++ L A+E+ Sbjct: 86 QFGFEKLSA-IDSGVKEVRKALENAEKARRRGVRTMLFIDEIHRFNKAQQDTLLHAIEE- 143 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173 L ++VG S ++N + + + +V +L NPL DR Sbjct: 144 GLVVLVGATTENPSFEVNAA----LLSRAQVYIL-NPLGDR 179 >gi|299768300|ref|YP_003730326.1| recombination factor protein RarA [Acinetobacter sp. DR1] gi|298698388|gb|ADI88953.1| recombination factor protein RarA [Acinetobacter sp. DR1] Length = 421 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VIA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR +TL + + LL N LQ D+F ++ Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQADKF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 + +E+ ++Q A Sbjct: 176 YIHVEEYDALIQFAA 190 >gi|260553887|ref|ZP_05826155.1| recombination factor protein RarA [Acinetobacter sp. RUH2624] gi|260405007|gb|EEW98509.1| recombination factor protein RarA [Acinetobacter sp. RUH2624] Length = 421 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VIA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR +TL + + LL N LQ D+F ++ Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDKF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 + IE+ ++Q A Sbjct: 176 YIHIEEYDALLQFAA 190 >gi|161507635|ref|YP_001577589.1| recombination factor protein RarA [Lactobacillus helveticus DPC 4571] gi|160348624|gb|ABX27298.1| putative chromosome segregation helicase [Lactobacillus helveticus DPC 4571] Length = 441 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 107/235 (45%), Gaps = 41/235 (17%) Query: 2 MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIE-AAKARAEALDHVLF 59 M E L S E+ ++ +RP+ L++F GQ + K+ + K R +L + Sbjct: 1 MKEESLFSLANQNENTPLADRVRPQNLDDFVGQENLIGHGKILRDLIEKDRVPSL---IL 57 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDE 113 GPPG GKTTLA+++A+ +F + S V + D+ ++ E +R+++FIDE Sbjct: 58 WGPPGTGKTTLAEIIAKRTKAHFITFSA-VTSSIKDIRKIMEEAEQNRQFGERNIVFIDE 116 Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQ 171 IHR + ++ P +E TLI ATT + + L Sbjct: 117 IHRFNKAQQDAFLPFVEQ--------------------GSITLIGATTENPYFEVNSALL 156 Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLT------GLAVTDEAACEIAMRSRGTPR 220 R + + L+ +++D+ +++R K + V+DEA +IA+ G R Sbjct: 157 SRAKVFV-LHSLKVDDIVLLLKRALKNPNGFPDLNVKVSDEALKQIAIFGNGDAR 210 >gi|327314193|ref|YP_004329630.1| recombination factor protein RarA [Prevotella denticola F0289] gi|326944810|gb|AEA20695.1| recombination factor protein RarA [Prevotella denticola F0289] Length = 406 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+++ GQ V + L+ I++ + + + GPPG+GKTTLAQ++A L Sbjct: 8 MRPRTLDDYIGQQHLVGEGAVLRRMIDSGR-----IASFILWGPPGVGKTTLAQIIAHRL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ ++ +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVRDVIERAQNGRFFNSASPILFIDEIHRFSKSQQDSLLGAVEK 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|238018960|ref|ZP_04599386.1| hypothetical protein VEIDISOL_00820 [Veillonella dispar ATCC 17748] gi|237864444|gb|EEP65734.1| hypothetical protein VEIDISOL_00820 [Veillonella dispar ATCC 17748] Length = 433 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 14/146 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ GQ +A F+ A + + + +LF GP G GKTTLA ++A+ + Sbjct: 20 MRPTTLDHLYGQEKAVGK-GTFLRAMVEK-DTIPSMLFYGPCGTGKTTLAGIIAKVSNSH 77 Query: 82 FRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + + A G+L ++ + L+ R +LF+DEIHR + +++L P +ED + Sbjct: 78 FVNLNA-TNAGIGELRNIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVEDGTI 136 Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157 +++G ++N LSR LI Sbjct: 137 -ILIGATTENPFFEVNRPLLSRLRLI 161 >gi|170781157|ref|YP_001709489.1| recombination factor protein RarA [Clavibacter michiganensis subsp. sepedonicus] gi|169155725|emb|CAQ00846.1| putative ATPase [Clavibacter michiganensis subsp. sepedonicus] Length = 486 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 12/133 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAK--ARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPR+L+E TGQ + + A A + ++ GPPG GKTTLAQ +A Sbjct: 19 MRPRSLDEVTGQRHLLTPGSPLVSLASDVAGEQGSVSIILWGPPGTGKTTLAQAIAHGSS 78 Query: 80 VNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ ++ L DRD VLF+DEIHR + ++ L P +E+ Sbjct: 79 RRFVELSA-VTAGVRDVRQVMEKALSDRDLFGVSTVLFLDEIHRFTKAQQDALLPGVENG 137 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 138 WVILIAATTENPS 150 >gi|149244336|ref|XP_001526711.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146449105|gb|EDK43361.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 839 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 22/122 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP+TL++F GQ K+ E A R A+ + L GPPG GKTT+A+++A+ Sbjct: 187 VRPKTLDDFIGQE------KLVGENAPLRNLIQADLIPSFLLWGPPGCGKTTIARIIAKS 240 Query: 78 LGVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 + SG A+A +L L R +LF+DEIHR + V+++L P Sbjct: 241 TDYRYVELSGADSNAKSLKDAFAQADNLKKLTGQ---RTILFLDEIHRYNKAVQDLLLPV 297 Query: 129 ME 130 +E Sbjct: 298 IE 299 >gi|256826951|ref|YP_003150910.1| Recombination protein MgsA [Cryptobacterium curtum DSM 15641] gi|256583094|gb|ACU94228.1| Recombination protein MgsA [Cryptobacterium curtum DSM 15641] Length = 435 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 24/225 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L++ GQ EA ++ AA A A++L V+ GP G GKT++A ++A Sbjct: 23 MRPRSLDDLLGQQEAIGP-GSWLHAAIA-ADSLSSVILYGPAGTGKTSIAHIIAESTKAE 80 Query: 82 FRSTS---GPVIAKAGDLAAL---LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S G V ++AA LT+ R +LF+DEIHR + ++ L A+ED ++ Sbjct: 81 FVEVSAIGGTVSDLRREIAAAEKRLTSHGMRTILFVDEIHRFNRSQQDALLHAVED-RVV 139 Query: 136 LMVGEGPSARSVKIN---LSRFTLIAATTR-----VGLLTNPLQDRFGIPIRLNFYEIED 187 ++VG ++N LSR ++ T+ ++ L D G+ Y ++D Sbjct: 140 VLVGATTENPFFEVNSALLSRSRIVELTSLSDEEIASVVQRALVDERGL---AGAYSLDD 196 Query: 188 --LKTIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 L I+Q G T E AC++A R+ T I ++++ Sbjct: 197 EALDAIMQVSGGDARSALTTLELACDMA-RAEDTHAITAAMVKKA 240 >gi|256752628|ref|ZP_05493481.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748512|gb|EEU61563.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 443 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 118/261 (45%), Gaps = 40/261 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL+EF GQ K+ E + + + ++ GPPG+GKTTLA ++A Sbjct: 23 MRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V++ ++ ++ E R V+FIDEIHR + ++ P +E + Sbjct: 81 FVTFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 138 Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIED 187 +++G S ++N LSR F + T + LL L+D+ Sbjct: 139 ILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLVLLKRALRDK-------------- 184 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--I 245 +RG + + ++ + +IA+ + G R+A L A+V + I + + Sbjct: 185 -----ERGLGMYDIEISGDQLKKIALFANGDARVALNTLEIAVMGAKVIEGERIVTDDIL 239 Query: 246 ADAALLR-LAIDKMGFDQLDL 265 ADA + L DK G + +L Sbjct: 240 ADAMQKKTLLYDKQGEEHYNL 260 >gi|227543541|ref|ZP_03973590.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri CF48-3A] gi|300908249|ref|ZP_07125715.1| replication-associated recombination protein A [Lactobacillus reuteri SD2112] gi|227186468|gb|EEI66539.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri CF48-3A] gi|300894676|gb|EFK88032.1| replication-associated recombination protein A [Lactobacillus reuteri SD2112] Length = 434 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ K+ KA+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRTLDEVVGQQHLVGPGKIISRMVKAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL + ++ L P +E+ ++ +++G Sbjct: 67 FRKLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKVKQDFLLPHLENGRI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYISIN 135 >gi|34540836|ref|NP_905315.1| recombination factor protein RarA [Porphyromonas gingivalis W83] gi|188995064|ref|YP_001929316.1| recombination factor protein RarA [Porphyromonas gingivalis ATCC 33277] gi|34397150|gb|AAQ66214.1| ATPase, AAA family [Porphyromonas gingivalis W83] gi|188594744|dbj|BAG33719.1| ATPase AAA family [Porphyromonas gingivalis ATCC 33277] Length = 434 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 25/149 (16%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL ++ GQ + + + L+ IE + + ++ GPPG+GKTTLA+++A E+ Sbjct: 10 MRPKTLADYVGQQHLIGSGAVLRQMIEQGQTPS-----MILWGPPGVGKTTLAEIIAHEV 64 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILY 126 F + S VIA D+ + NL D R +LFIDEIHR S ++ L Sbjct: 65 DAPFYTLSAVSSGVKEVREVIA---DIESNRGNLFDKGGRAILFIDEIHRFSKSQQDSLL 121 Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSR 153 A+E + L+ E PS ++ LSR Sbjct: 122 AAVERGIVTLIGATTENPSFEVIRPLLSR 150 >gi|288801937|ref|ZP_06407378.1| ATPase, AAA family [Prevotella melaninogenica D18] gi|288335372|gb|EFC73806.1| ATPase, AAA family [Prevotella melaninogenica D18] Length = 418 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+++ GQ V + L+ I++ + + + GPPG+GKTTLAQ++A L Sbjct: 8 LRPRTLDDYIGQEHLVGEGAVLRRMIDSGR-----IASFILWGPPGVGKTTLAQIIANRL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVRDVIERAQSGRFFNSVSPILFIDEIHRFSKSQQDSLLGAVEK 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|302347025|ref|YP_003815323.1| recombination factor protein RarA [Prevotella melaninogenica ATCC 25845] gi|302150622|gb|ADK96883.1| recombination factor protein RarA [Prevotella melaninogenica ATCC 25845] Length = 405 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+++ GQ V + L+ I++ + + + GPPG+GKTTLAQ++A L Sbjct: 8 LRPRTLDDYIGQEHLVGEGAVLRRMIDSGR-----IASFILWGPPGVGKTTLAQIIANRL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVRDVIERAQSGRFFNSASPILFIDEIHRFSKSQQDSLLGAVEK 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|332873377|ref|ZP_08441331.1| recombination factor protein RarA [Acinetobacter baumannii 6014059] gi|332738440|gb|EGJ69313.1| recombination factor protein RarA [Acinetobacter baumannii 6014059] Length = 421 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VIA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR +TL + + LL N LQ D+F ++ Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDKF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 + IE+ ++Q A Sbjct: 176 YIHIEEYDALLQFAA 190 >gi|162286716|ref|YP_001086418.2| recombination factor protein RarA [Acinetobacter baumannii ATCC 17978] gi|193078744|gb|ABO13816.2| putative ATPase [Acinetobacter baumannii ATCC 17978] gi|323519866|gb|ADX94247.1| recombination factor protein RarA [Acinetobacter baumannii TCDC-AB0715] Length = 421 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VIA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR +TL + + LL N LQ D+F ++ Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDKF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 + IE+ ++Q A Sbjct: 176 YIHIEEYDALLQFAA 190 >gi|13358001|ref|NP_078275.1| holliday junction DNA helicase (fragment) [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762089|ref|YP_001752524.1| holliday junction ATP-dependent DNA helicase RuvB [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11356863|pir||E82891 holliday junction DNA helicase, truncated homolog UU438 [imported] - Ureaplasma urealyticum gi|6899429|gb|AAF30850.1|AE002140_9 holliday junction DNA helicase (fragment) [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827666|gb|ACA32928.1| holliday junction ATP-dependent DNA helicase RuvB [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 109 Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 12/109 (11%) Query: 211 IAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYL 268 IA ++G PR+A RLL+RV DF K+I ++I I + G D+ D+ YL Sbjct: 2 IANNAKGIPRLANRLLKRVVDFKINGFNDIKSIFKKIQ--------IYEFGLDEQDINYL 53 Query: 269 TMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317 ++ R +G+++I+ L + IE IEPY+IQ FI + RGR Sbjct: 54 NVLYRQ--DNEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGR 100 >gi|311894847|dbj|BAJ27255.1| putative ATPase [Kitasatospora setae KM-6054] Length = 449 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + +K A A V+ GPPG GKTTLA V+++ + Sbjct: 28 MRPRTLDEVAGQRQLLKDGSPLRRLVAGSKGPA-ATSSVILWGPPGTGKTTLAHVISQAV 86 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 F S + D A + R+ VLF+DEIHR S ++ L PA+E+ Sbjct: 87 EGRFVELSAITHGVKEVRAVIDGARRAVGMSGRETVLFLDEIHRFSKAQQDSLLPAVENR 146 Query: 133 QLDLMV 138 + L+ Sbjct: 147 WVTLIA 152 >gi|206900704|ref|YP_002250508.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12] gi|206739807|gb|ACI18865.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12] Length = 431 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 99/229 (43%), Gaps = 24/229 (10%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MDR+ L + + +RPRTLEEF G E F+ A + L ++ G Sbjct: 1 MDRQESLFKEDHNYEPLSFRMRPRTLEEFLG-AEDIIGENSFLRKAINKG-YLPSLIVYG 58 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL---TNLE---DRDVLFIDEIH 115 PPG GKTTL+ ++A+ + F + ++ AL NLE R VLF+DEIH Sbjct: 59 PPGSGKTTLSILLAKAINAEFIELNAAIVGVQELKEALQRARRNLELYGKRTVLFLDEIH 118 Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173 + + +++L P +E + L+ E P LSR LI PL + Sbjct: 119 HFNRLQQDVLLPFVEKGTIILIGATTENPFFALNTTLLSRCRLIE--------LKPLSNE 170 Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 I E ED RG L +TD+A EI + G RIA Sbjct: 171 NIEKILRRALEDED------RGLGKKKLQITDDAIEEIVRFANGDARIA 213 >gi|254432154|ref|ZP_05045857.1| ATPase [Cyanobium sp. PCC 7001] gi|197626607|gb|EDY39166.1| ATPase [Cyanobium sp. PCC 7001] Length = 753 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 40/214 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL++F GQ ++ A A + + +++ GPPG GKTTLA+++A + Sbjct: 23 LRPRTLDDFVGQEGILGPGRLLRRAIAA--DRVGNLILHGPPGTGKTTLARIIAGTTRAH 80 Query: 82 FRSTSGPVIAKAGDLAALLTN----LED---RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + V+A DL + LE R +LFIDE+HR + ++ L P +E+ + Sbjct: 81 FTSLNA-VLAGVKDLRTAVDEARGRLEQHGLRTLLFIDEVHRFNAAQQDALLPWVENGTV 139 Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 L+ E P K +SR L RL E L ++ Sbjct: 140 TLIGATTENPFFEVNKALVSRSRL---------------------FRLQPLEPIHLHQLL 178 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 QR A++DEAA +R + TP A L+ Sbjct: 179 QR-------ALSDEAAGYGRIRVQLTPEAADHLV 205 >gi|169634881|ref|YP_001708617.1| recombination factor protein RarA [Acinetobacter baumannii SDF] gi|239502781|ref|ZP_04662091.1| recombination factor protein RarA [Acinetobacter baumannii AB900] gi|260557813|ref|ZP_05830026.1| recombination factor protein RarA [Acinetobacter baumannii ATCC 19606] gi|169153673|emb|CAP02871.1| putative ATPase [Acinetobacter baumannii] gi|260408604|gb|EEX01909.1| recombination factor protein RarA [Acinetobacter baumannii ATCC 19606] Length = 421 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VIA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR +TL + + LL N LQ D+F ++ Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDKF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 + IE+ ++Q A Sbjct: 176 YIHIEEYDALLQFAA 190 >gi|269926092|ref|YP_003322715.1| AAA ATPase central domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269789752|gb|ACZ41893.1| AAA ATPase central domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 423 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 113/252 (44%), Gaps = 25/252 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR ++E GQ K + AA R +++ ++ GPPG GKT+LA +A N Sbjct: 24 MRPRNIDEIVGQEHLLGPGKP-LRAAIER-DSIPSIILWGPPGTGKTSLAMAIAETTSSN 81 Query: 82 FRSTSG-----PVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S P + + + A L NL R ++F+DEIHR + ++ + P +E+ + Sbjct: 82 FVHLSAVSVGVPELRRVIESAIRLKRNLRKRTIVFLDEIHRFNKAQQDAVLPHVENGSIT 141 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE-IEDLKTIVQR 194 L +G S ++N + + + RV +L NPL + I+L IED +R Sbjct: 142 L-IGATTENPSFEVN----SALLSRCRVYVL-NPLSEEH---IKLILKRAIED----KER 188 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADAALLRL 253 G L V D A +A + G RIA L A H + RE+ + L Sbjct: 189 GLGSYALQVDDVALEFLADLANGDARIALTALEMAARVANDGHIDVDLIREVVQRKV--L 246 Query: 254 AIDKMGFDQLDL 265 DK G DL Sbjct: 247 LYDKSGDQHYDL 258 >gi|51244885|ref|YP_064769.1| recombination factor protein RarA [Desulfotalea psychrophila LSv54] gi|50875922|emb|CAG35762.1| probable uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Desulfotalea psychrophila LSv54] Length = 440 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 110/262 (41%), Gaps = 51/262 (19%) Query: 23 RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFV--GPPGLGKTTLAQVVARE 77 RP+ LEE GQ +E S L+ IE D+ F+ GPPG GKTT+A+ + Sbjct: 24 RPQKLEEIHGQNKLLEKGSILRSMIEQD-------DYSSFILWGPPGTGKTTIARFIETH 76 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAME 130 F S S V+ K ++ AL+ + ++F+DEIHR + ++ P +E Sbjct: 77 TKHIFASLSA-VLTKIAEVKALMEQARFRLQAEGQKTLVFVDEIHRFNKSQQDAFLPYVE 135 Query: 131 DFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 + L+ E PS + LSR FTL PL I Sbjct: 136 SGAIVLLGATTENPSFEVISALLSRCHVFTL-----------QPL-------------SI 171 Query: 186 EDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ED+K+I+ R K + ++D+A +A +S G R A L V + I + Sbjct: 172 EDIKSIMTRALKEIPREIHISDQALTMLAEKSGGDGRKALNHLETVARSGATGDSIDIEK 231 Query: 244 EIADAALLRLAIDKMGFDQLDL 265 I + L DK G + +L Sbjct: 232 AIQAISQRSLFYDKRGEEHFNL 253 >gi|254457233|ref|ZP_05070661.1| AAA ATPase [Campylobacterales bacterium GD 1] gi|207086025|gb|EDZ63309.1| AAA ATPase [Campylobacterales bacterium GD 1] Length = 395 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 12/117 (10%) Query: 21 LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP + ++ GQ + L+V E L H F GP G GKT++A+++A+ Sbjct: 6 LLRPNSFDDLVGQEHLSAQNAPLRVLCEKY-----TLGHSFFYGPAGCGKTSIARIIAKT 60 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMED 131 + + F + I K L + ++ + +LFIDE+HRL+ +E+L P ME+ Sbjct: 61 MDLPFYEFNATSI-KIEQLRKIFEQYKNALQKPLLFIDEVHRLAKNQQEVLLPVMEN 116 >gi|332884949|gb|EGK05204.1| hypothetical protein HMPREF9456_03117 [Dysgonomonas mossii DSM 22836] Length = 422 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR LEE+ GQ V + L+ IE+ + + L GPPG+GKTTLAQ++A L Sbjct: 9 LRPRNLEEYIGQKHLVGEGAILRKMIESGRVPS-----FLLWGPPGVGKTTLAQIIANTL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S + + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 DTPFYTLSA-INSGVKDVREVIELAKKNQFFNTKSPILFIDEIHRFSKSQQDSLLGAVET 122 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS ++ LSR Sbjct: 123 GVITLIGATTENPSFEVIRPLLSR 146 >gi|184155391|ref|YP_001843731.1| recombination factor protein RarA [Lactobacillus fermentum IFO 3956] gi|183226735|dbj|BAG27251.1| helicase [Lactobacillus fermentum IFO 3956] Length = 448 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 8/134 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L EF GQ + KV E + + L ++ GPPG+GKTTLA+++A++ Sbjct: 22 VRPRELAEFFGQDQLVGTGKVLSELIEQ--DRLPSLILWGPPGVGKTTLAEIIAQKTKAK 79 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + S I + + A +R V+FIDEIHR + ++ P +E ++ + Sbjct: 80 FITFSAVNSSIKDIKQVMEAATANHQFGERTVVFIDEIHRFNKAQQDAFLPYVERGEI-I 138 Query: 137 MVGEGPSARSVKIN 150 ++G S ++N Sbjct: 139 LIGATTENPSFELN 152 >gi|328954253|ref|YP_004371587.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454577|gb|AEB10406.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM 11109] Length = 433 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 10/140 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LEEF GQ + ++ A +A ++F GPPG GKTTLAQ++A + Sbjct: 14 MRPSSLEEFVGQEQIIGPGRLLRRAIEAD-RLFSSLIFWGPPGCGKTTLAQIIAGVTRSH 72 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S S V++ D+ ++ E R ++ IDEIHR + ++ L P +E L Sbjct: 73 FVSLSA-VLSGVKDIREVVAQAEKKRLQQQRTIVLIDEIHRFNKAQQDALLPHVEAGTLI 131 Query: 136 LM--VGEGPSARSVKINLSR 153 L+ E P + LSR Sbjct: 132 LIGATTENPYFEVIAPLLSR 151 >gi|148543723|ref|YP_001271093.1| recombination factor protein RarA [Lactobacillus reuteri DSM 20016] gi|184153130|ref|YP_001841471.1| recombination factor protein RarA [Lactobacillus reuteri JCM 1112] gi|227363297|ref|ZP_03847427.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri MM2-3] gi|325682095|ref|ZP_08161613.1| replication-associated recombination protein A [Lactobacillus reuteri MM4-1A] gi|148530757|gb|ABQ82756.1| Recombination protein MgsA [Lactobacillus reuteri DSM 20016] gi|183224474|dbj|BAG24991.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227071660|gb|EEI09953.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri MM2-3] gi|324978739|gb|EGC15688.1| replication-associated recombination protein A [Lactobacillus reuteri MM4-1A] Length = 434 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ K+ KA+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRTLDEVVGQQHLVGPGKIISRMVKAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL + ++ L P +E+ ++ +++G Sbjct: 67 FRKLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKVKQDFLLPHLENGRI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYISIN 135 >gi|228993137|ref|ZP_04153059.1| hypothetical protein bpmyx0001_38730 [Bacillus pseudomycoides DSM 12442] gi|228766596|gb|EEM15237.1| hypothetical protein bpmyx0001_38730 [Bacillus pseudomycoides DSM 12442] Length = 420 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 1 MRPTNIKEIIGQEHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 58 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 59 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 112 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEIE---------DLK 189 TLI ATT +NP I R +E+ LK Sbjct: 113 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTENDILIGLK 152 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VTDEA C A S G R A L + F + IT E Sbjct: 153 RALEDKEKGLGEYHVTVTDEAMCHFANASGGDMRSAYNALELAVLSSFTTDDQSTEITLE 212 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 213 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 257 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 258 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 284 >gi|261492454|ref|ZP_05989010.1| putative recombination ATPase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311913|gb|EEY13060.1| putative recombination ATPase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 445 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 13/118 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A L Sbjct: 19 MRPRNLAEYVGQSHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHL 73 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A + A L R +LF+DE+HR + ++ P +ED Sbjct: 74 DAEVERISAVTSGVKEIREAIEQAKLNRQAGRRTLLFVDEVHRFNKSQQDAFLPHIED 131 >gi|37521678|ref|NP_925055.1| recombination factor protein RarA/unknown domain fusion protein [Gloeobacter violaceus PCC 7421] gi|35212676|dbj|BAC90050.1| glr2109 [Gloeobacter violaceus PCC 7421] Length = 747 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L++F GQ ++ A +A + L ++F GPPG GKTTLA+++A + Sbjct: 35 MRPRSLDQFVGQGHIVGPGRLLRRAIQA--DQLSSLIFYGPPGTGKTTLARIIAGTTRAH 92 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + + V+A D+ + + R +LF+DE+HR + ++ L P +E+ Sbjct: 93 FIAINA-VLAGVKDIREAIDEAKSRRGQFGRRTILFVDEVHRFNKSQQDALLPWIEN 148 >gi|260662096|ref|ZP_05862992.1| helicase [Lactobacillus fermentum 28-3-CHN] gi|260553479|gb|EEX26371.1| helicase [Lactobacillus fermentum 28-3-CHN] Length = 448 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 8/134 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L EF GQ + KV E + + L ++ GPPG+GKTTLA+++A++ Sbjct: 22 VRPRELAEFFGQDQLVGTGKVLSELIEQ--DRLPSLILWGPPGVGKTTLAEIIAQKTKAK 79 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + S I + + A +R V+FIDEIHR + ++ P +E ++ + Sbjct: 80 FITFSAVNSSIKDIKQVMEAATANHQFGERTVVFIDEIHRFNKAQQDAFLPYVERGEI-I 138 Query: 137 MVGEGPSARSVKIN 150 ++G S ++N Sbjct: 139 LIGATTENPSFELN 152 >gi|259503655|ref|ZP_05746557.1| AAA family ATPase [Lactobacillus antri DSM 16041] gi|259168374|gb|EEW52869.1| AAA family ATPase [Lactobacillus antri DSM 16041] Length = 433 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTLEE GQ K+ KAR L ++ GPPG GKT++A +A Sbjct: 8 MRPRTLEEVVGQQHLVGPGKIISRMVKARM--LSSMILYGPPGTGKTSIASAIAGSTRYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DEIHRL ++ L P +E ++ +++G Sbjct: 66 FRKLNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI-VLIGA 124 Query: 141 GPSARSVKIN 150 + IN Sbjct: 125 TTENPYISIN 134 >gi|308180384|ref|YP_003924512.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045875|gb|ADN98418.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ST-III] Length = 420 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 116/277 (41%), Gaps = 50/277 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-HV----LFVGPPGLGKTTLAQVVAR 76 +RP++LE+ GQ + ++A + + +D HV + GPPG GKT+LAQ++A Sbjct: 11 MRPQSLEQMVGQQD-------LLKAGQPLRQIIDQHVNIPLILWGPPGTGKTSLAQIIAS 63 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 + F + + KA A+ E VL IDEIHR++ +++ L P +E+ + + Sbjct: 64 QDDYPFVAFTASTENKAQLTKAIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHV-M 122 Query: 137 MVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE-DLKTIV 192 ++G E P V SR + PL D +IE L+ V Sbjct: 123 LIGSTTENPIMSIVPAIRSRCQIFE--------FQPLSDT----------DIEIALRRAV 164 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-------------VRDFAEVAHAK 239 LT V +A IA+ + G RIA +L V+ FA+ H Sbjct: 165 TDIYNLTDDQVDAKALNLIAISAEGDLRIALNILETLHAIDQKQITVAAVQHFAQQQHFS 224 Query: 240 TITREIADAALLRLAIDKMGFDQLD--LRYLTMIARN 274 + L D M D L YLT++ +N Sbjct: 225 YDRKATKHYDYLSAYSDSMAGSDTDAALYYLTILLKN 261 >gi|304439985|ref|ZP_07399878.1| AAA family ATPase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371477|gb|EFM25090.1| AAA family ATPase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 434 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+EF GQ K K+ + ++F GPPG+GKTTLA++ A G Sbjct: 22 MRPKNLDEFVGQSHIVGEGKYLNRLLKSGR--VFSMIFYGPPGVGKTTLAEIFAGLSGYK 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F S + + +L LL ED + +LFIDEIHR + ++ L P +E Sbjct: 80 FVRISA-ITSGVKELRELLKTAEDDLKFNNVKTILFIDEIHRFNKSQQDALLPFVE 134 >gi|227515139|ref|ZP_03945188.1| recombination ATPase [Lactobacillus fermentum ATCC 14931] gi|227086471|gb|EEI21783.1| recombination ATPase [Lactobacillus fermentum ATCC 14931] Length = 448 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 8/134 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L EF GQ + KV E + + L ++ GPPG+GKTTLA+++A++ Sbjct: 22 VRPRELAEFFGQDQLVGTGKVLSELIEQ--DRLPSLILWGPPGVGKTTLAEIIAQKTKAK 79 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + S I + + A +R V+FIDEIHR + ++ P +E ++ + Sbjct: 80 FITFSAVNSSIKDIKQVMEAATANHQFGERTVVFIDEIHRFNKAQQDAFLPYVERGEI-I 138 Query: 137 MVGEGPSARSVKIN 150 ++G S ++N Sbjct: 139 LIGATTENPSFELN 152 >gi|299783213|gb|ADJ41211.1| Recombination ATPase [Lactobacillus fermentum CECT 5716] Length = 448 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 8/134 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L EF GQ + KV E + + L ++ GPPG+GKTTLA+++A++ Sbjct: 22 VRPRELAEFFGQDQLVGTGKVLSELIEQ--DRLPSLILWGPPGVGKTTLAEIIAQKTKAK 79 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + S I + + A +R V+FIDEIHR + ++ P +E ++ + Sbjct: 80 FITFSAVNSSIKDIKQVMEAATANHQFGERTVVFIDEIHRFNKAQQDAFLPYVERGEI-I 138 Query: 137 MVGEGPSARSVKIN 150 ++G S ++N Sbjct: 139 LIGATTENPSFELN 152 >gi|28378233|ref|NP_785125.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1] gi|28271068|emb|CAD63973.1| chromosome segregation helicase (putative) [Lactobacillus plantarum WCFS1] Length = 420 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 116/277 (41%), Gaps = 50/277 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-HV----LFVGPPGLGKTTLAQVVAR 76 +RP++LE+ GQ + ++A + + +D HV + GPPG GKT+LAQ++A Sbjct: 11 MRPQSLEQMVGQQD-------LLKAGQPLRQIIDQHVNIPLILWGPPGTGKTSLAQIIAS 63 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 + F + + KA A+ E VL IDEIHR++ +++ L P +E+ + + Sbjct: 64 QDDYPFVAFNASTENKAQLTKAIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHV-M 122 Query: 137 MVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE-DLKTIV 192 ++G E P V SR + PL D +IE L+ V Sbjct: 123 LIGSTTENPIMSIVPAIRSRCQIFE--------FQPLSDT----------DIEIALRRAV 164 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-------------VRDFAEVAHAK 239 LT V +A IA+ + G RIA +L V+ FA+ H Sbjct: 165 TDIYNLTDDQVDAKALNLIAISAEGDLRIALNILETLHAIDQKQITVAAVQHFAQQQHFS 224 Query: 240 TITREIADAALLRLAIDKMGFDQLD--LRYLTMIARN 274 + L D M D L YLT++ +N Sbjct: 225 YDRKATKHYDYLSAYSDSMAGSDTDAALYYLTILLKN 261 >gi|313895502|ref|ZP_07829058.1| replication-associated recombination protein A [Selenomonas sp. oral taxon 137 str. F0430] gi|312975628|gb|EFR41087.1| replication-associated recombination protein A [Selenomonas sp. oral taxon 137 str. F0430] Length = 444 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 18/159 (11%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHV 57 M +++GL + + + A+ +RP TLE+F GQ K+ IE+ + + + Sbjct: 1 MDEQQGLFEQALHRPLAE--RVRPHTLEDFVGQEHLLGKGKILRRLIES-----DQITSM 53 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111 +F GPPG+GKTTLAQ++A F + S V D+ ++ E R ++F+ Sbjct: 54 IFWGPPGVGKTTLAQIIAARTKAEFITFSA-VSGGIKDIRTVMQEAERKRSYGQRVIIFV 112 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 DEIHR + ++ P +E + +++G S +IN Sbjct: 113 DEIHRFNKAQQDAFLPFVEKGSI-VLIGATTENPSFEIN 150 >gi|254556440|ref|YP_003062857.1| recombination factor protein RarA [Lactobacillus plantarum JDM1] gi|254045367|gb|ACT62160.1| recombination factor protein RarA [Lactobacillus plantarum JDM1] Length = 420 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 116/277 (41%), Gaps = 50/277 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-HV----LFVGPPGLGKTTLAQVVAR 76 +RP++LE+ GQ + ++A + + +D HV + GPPG GKT+LAQ++A Sbjct: 11 MRPQSLEQMVGQQD-------LLKAGQPLRQIIDQHVNIPLILWGPPGTGKTSLAQIIAS 63 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 + F + + KA A+ E VL IDEIHR++ +++ L P +E+ + + Sbjct: 64 QDDYPFVAFNASTENKAQLTKAIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHV-M 122 Query: 137 MVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE-DLKTIV 192 ++G E P V SR + PL D +IE L+ V Sbjct: 123 LIGSTTENPIMSIVPAIRSRCQIFE--------FQPLSDT----------DIEIALRRAV 164 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-------------VRDFAEVAHAK 239 LT V +A IA+ + G RIA +L V+ FA+ H Sbjct: 165 TDIYNLTDDQVDAKALNLIAISAEGDLRIALNILETLHAIDQKQITVAAVQHFAQQQHFS 224 Query: 240 TITREIADAALLRLAIDKMGFDQLD--LRYLTMIARN 274 + L D M D L YLT++ +N Sbjct: 225 YDRKATKHYDYLSAYSDSMAGSDTDAALYYLTILLKN 261 >gi|262280584|ref|ZP_06058368.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258362|gb|EEY77096.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 421 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGENAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VIA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR +TL + + L+ N LQ D+F ++ Sbjct: 119 EKGKITLVGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLINNALQADKF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 + IE+ ++Q A Sbjct: 176 YIHIEEYDALIQFAA 190 >gi|139436949|ref|ZP_01771109.1| Hypothetical protein COLAER_00082 [Collinsella aerofaciens ATCC 25986] gi|133776596|gb|EBA40416.1| Hypothetical protein COLAER_00082 [Collinsella aerofaciens ATCC 25986] Length = 454 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 17/128 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E+ GQ +A S L+ IE + L V+ GP G GKTTLA ++A Sbjct: 28 MRPNSLDEYVGQQKAVGKGSWLRAAIEH-----DVLSSVILYGPAGTGKTTLAHIIANHT 82 Query: 79 GVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S V DL + L + R +LFIDEIHR S ++ L A+E+ Sbjct: 83 KSEFVEVSA-VTGTVKDLRRVIDEAKTRLNTYDRRTILFIDEIHRFSKSQQDALLHAVEN 141 Query: 132 FQLDLMVG 139 + +M+G Sbjct: 142 RTV-IMIG 148 >gi|300767164|ref|ZP_07077076.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494983|gb|EFK30139.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 422 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 116/277 (41%), Gaps = 50/277 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-HV----LFVGPPGLGKTTLAQVVAR 76 +RP++LE+ GQ + ++A + + +D HV + GPPG GKT+LAQ++A Sbjct: 13 MRPQSLEQMVGQQD-------LLKAGQPLRQIIDQHVNIPLILWGPPGTGKTSLAQIIAS 65 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 + F + + KA A+ E VL IDEIHR++ +++ L P +E+ + + Sbjct: 66 QDDYPFVAFTASTENKAQLTKAIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHV-M 124 Query: 137 MVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE-DLKTIV 192 ++G E P V SR + PL D +IE L+ V Sbjct: 125 LIGSTTENPIMSIVPAIRSRCQIFE--------FQPLSDT----------DIEIALRRAV 166 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-------------VRDFAEVAHAK 239 LT V +A IA+ + G RIA +L V+ FA+ H Sbjct: 167 TDIYNLTDDQVDAKALNLIAISAEGDLRIALNILETLHAIDQKQITVAAVQHFAQQQHFS 226 Query: 240 TITREIADAALLRLAIDKMGFDQLD--LRYLTMIARN 274 + L D M D L YLT++ +N Sbjct: 227 YDRKATKHYDYLSAYSDSMAGSDTDAALYYLTILLKN 263 >gi|319947814|ref|ZP_08022008.1| recombination factor protein RarA [Dietzia cinnamea P4] gi|319438538|gb|EFV93464.1| recombination factor protein RarA [Dietzia cinnamea P4] Length = 417 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 15/119 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E + V+ GPPG GKTTLA +VA Sbjct: 5 MRPRTLDEVIGQEHLLRPNSPLRRLVEGRGGSS-----VILYGPPGTGKTTLANLVASTS 59 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED 131 G +F + S + A D+ A++ + R VLFIDE+HR S ++ L A+E+ Sbjct: 60 GRHFVALSA-LSAGVKDVRAVIDDARTRQVHGQRTVLFIDEVHRFSKSQQDALLAAVEN 117 >gi|260426534|ref|ZP_05780513.1| recombination factor protein RarA [Citreicella sp. SE45] gi|260421026|gb|EEX14277.1| recombination factor protein RarA [Citreicella sp. SE45] Length = 432 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 96/213 (45%), Gaps = 38/213 (17%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP TL++ GQ V S L+ I A +AL +L GPPG+GKT++A+ V + Sbjct: 18 LLRPETLDDVIGQKALVAPGSLLRRRIAA-----DALGSLLLYGPPGIGKTSIARAVGQM 72 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL-FIDEIHRLSIIVEEILYPAMEDFQLDL 136 LG FR + + D+ + R VL F+DE+HRLS + L E+ D Sbjct: 73 LGKEFRVLHAAGV-RVSDIRKIADEARIRPVLMFVDEVHRLSSTQADDLLTICEEGTADF 131 Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + E P K +SR + ++L IED++ +++R Sbjct: 132 IGATTENPYHAIPKALISRSQV---------------------LKLEPLAIEDMEEVLRR 170 Query: 195 G-AKLTGLAVTDEAACE----IAMRSRGTPRIA 222 G A+L + E A E IA RS G R A Sbjct: 171 GMARLASDGIEVEIAPEHLRLIAGRSGGDARKA 203 >gi|320528982|ref|ZP_08030074.1| recombination factor protein RarA [Selenomonas artemidis F0399] gi|320138612|gb|EFW30502.1| recombination factor protein RarA [Selenomonas artemidis F0399] Length = 447 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 18/159 (11%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHV 57 M +++GL + + + A+ +RP TLE+F GQ K+ IE+ + + + Sbjct: 4 MDEQQGLFEQALHRPLAE--RVRPHTLEDFVGQEHLLGKGKILRRLIES-----DQITSM 56 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111 +F GPPG+GKTTLAQ++A F + S V D+ ++ E R ++F+ Sbjct: 57 IFWGPPGVGKTTLAQIIAARTKAEFITFSA-VSGGIKDIRTVMQEAERKRSYGQRVIIFV 115 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 DEIHR + ++ P +E + +++G S +IN Sbjct: 116 DEIHRFNKAQQDAFLPFVEKGSI-VLIGATTENPSFEIN 153 >gi|15806898|ref|NP_295621.1| recombination factor protein RarA [Deinococcus radiodurans R1] gi|6459682|gb|AAF11452.1|AE002029_1 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 434 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT+ E GQ A L +++ + L ++ GPPG+GKTTLA+++A E+ Sbjct: 14 LRPRTVAEVAGQSHLLGAGKPLTRVLQSGR-----LGSLILWGPPGVGKTTLARLLAGEV 68 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G +F + S V A D+ + E R VLF+DEIHR + ++ L P +E Sbjct: 69 GAHFIALSA-VSAGVKDVRDAVAEAEREQARGRRTVLFLDEIHRFNKAQQDALLPHVESG 127 Query: 133 QLDLM--VGEGPS 143 L L+ E PS Sbjct: 128 LLTLIGATTENPS 140 >gi|311694708|gb|ADP97581.1| recombination factor protein RarA [marine bacterium HP15] Length = 445 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 71/278 (25%), Positives = 119/278 (42%), Gaps = 49/278 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L ++ GQ K A + L ++ GPPG+GKTT AQ++A ++ Sbjct: 19 MRPASLNDYVGQAHLVGPGKPLRRAVEQ--GQLHSMILWGPPGVGKTTFAQLLANVGDLS 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V++ ++ A++ +R +LF+DE+HR + ++ P +ED Sbjct: 77 FETVSA-VLSGVKEIRAVVERARNRKQSQGRDTLLFVDEVHRFNKSQQDAFLPHIEDGTF 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + VG S ++N + + + TRV +L N E ED+ +++R Sbjct: 136 -IFVGATTENPSFELN----SALLSRTRVYVLKN--------------LEEEDILQLLRR 176 Query: 195 GAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 + L V ++ +A S G R A +L D AE A T Sbjct: 177 ALTVDEGFGGRLRVDEDVLTLMAAASGGDARRALNILEVAADLAEPDEAGT--------- 227 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287 D++ DQL+ T + R GG V + ISA Sbjct: 228 ------DRVTADQLEQVMQTSLRRFDKGGDVFYDQISA 259 >gi|254477504|ref|ZP_05090890.1| AAA ATPase, central region [Ruegeria sp. R11] gi|214031747|gb|EEB72582.1| AAA ATPase, central region [Ruegeria sp. R11] Length = 444 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L E GQ + L V + + +L ++ GPPG+GKTT+A+++ARE Sbjct: 32 LRPQSLAEVIGQTHVLGPEAPLGVMLASG-----SLSSLILWGPPGVGKTTIARLLARET 86 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 87 DLHFVQISAIFSGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 146 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 147 I-LLVGATTENPSFELN 162 >gi|113970302|ref|YP_734095.1| recombination factor protein RarA [Shewanella sp. MR-4] gi|113884986|gb|ABI39038.1| Recombination protein MgsA [Shewanella sp. MR-4] Length = 443 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 118/262 (45%), Gaps = 35/262 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT+ E+ GQ L+ +EA +A + ++ GPPG GKTTLA+++A Sbjct: 19 MRPRTIAEYMGQAHLLGEGQPLRQALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + D+ A + + R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VTSGVKDIRAAIEQAQAVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + + +G S +IN + + RV L+ QD + I T Sbjct: 133 GTV-IFIGATTENPSFEIN----NALLSRARVYLIKRLSQDEI-------VHIITQALTD 180 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 +RG L + + ++A G R A LL + D VA + + T E+ L+ Sbjct: 181 TERGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELMSDM--VADSGSFTTEM----LV 234 Query: 252 RLAIDKM-GFDQLDLRYLTMIA 272 ++A ++ GFD+ ++ +I+ Sbjct: 235 QVAGHQVAGFDKNGDQFYDLIS 256 >gi|325298651|ref|YP_004258568.1| AAA ATPase central domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318204|gb|ADY36095.1| AAA ATPase central domain protein [Bacteroides salanitronis DSM 18170] Length = 424 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 22/149 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A L Sbjct: 9 MRPKTLDDYIGQKHLVGEGAVLRRMIDAGR-----ISSFILWGPPGVGKTTLAQIIANRL 63 Query: 79 GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 V F + TSG VI KA + + +LFIDEIHR S ++ L A+ Sbjct: 64 EVPFYTLSAVTSGVKEVRDVIEKARNGRFFSSQ---SPILFIDEIHRFSKSQQDSLLGAV 120 Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTL 156 E + L+ E PS ++ LSR L Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|149277254|ref|ZP_01883396.1| ATPase, AAA family protein [Pedobacter sp. BAL39] gi|149232131|gb|EDM37508.1| ATPase, AAA family protein [Pedobacter sp. BAL39] Length = 426 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 10/140 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L+E+ GQ V +A +++ L ++F GPPG+GKTTLA ++++ L Sbjct: 11 MRPQSLDEYVGQQHIVGPDAVLRKALQSKQ--LPSMIFWGPPGVGKTTLAYIISQTLDRP 68 Query: 82 FRSTSG-----PVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S I D AALL + L +LFIDEIHR S ++ L A+E + Sbjct: 69 FFNLSAINSGVKDIRDVIDRAALLKDSLMGLPILFIDEIHRFSKSQQDSLLGAVERGLVT 128 Query: 136 LM--VGEGPSARSVKINLSR 153 L+ E PS + LSR Sbjct: 129 LIGATTENPSFEVISALLSR 148 >gi|213418776|ref|ZP_03351842.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213855440|ref|ZP_03383680.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 43 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 293 RDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 R+ IED++EPY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 1 RETIEDVLEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 40 >gi|224023693|ref|ZP_03642059.1| hypothetical protein BACCOPRO_00409 [Bacteroides coprophilus DSM 18228] gi|224016915|gb|EEF74927.1| hypothetical protein BACCOPRO_00409 [Bacteroides coprophilus DSM 18228] Length = 424 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A L Sbjct: 9 MRPKTLDDYIGQKHLVGEGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANRL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVRDVIDKARSNRFFSQQSPILFIDEIHRFSKSQQDSLLGAVET 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|254558789|ref|YP_003065884.1| recombination protein [Methylobacterium extorquens DM4] gi|254266067|emb|CAX21819.1| recombination protein [Methylobacterium extorquens DM4] Length = 437 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E GQ +R+ L ++F GPPG GKTT+A+++A E ++ Sbjct: 22 LRPRRLAEVVGQEHLTGPDGALTRLLASRS--LGSLVFWGPPGTGKTTVARLLAHETALH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + GDL + R +LF+DEIHR + + P MED + Sbjct: 80 FEQISA-IFSGIGDLRKVFEAARKRRATGQGTLLFVDEIHRFNRAQLDAFLPVMEDGTVT 138 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 139 LVGATTENPS 148 >gi|206891135|ref|YP_002249330.1| ATP/GTP-binding domain protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743073|gb|ACI22130.1| ATP/GTP-binding domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 414 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 + PR L+E+ GQ S K+ A + + + ++ GPPG GKT LA+++A + Sbjct: 21 MAPRNLDEYVGQSHIISEGKLLRRAIDS--DKITSLILYGPPGTGKTALARIIANKTKAY 78 Query: 82 FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F+ + I K LA + ++ +LFIDEIHRL+ I ++ L P +E+ Sbjct: 79 FQWLNATTLNIEEIRKQVSLAKQRLSRGEKTILFIDEIHRLNRISQDALLPDIEE 133 >gi|313678201|ref|YP_004055941.1| AAA family ATPase [Mycoplasma bovis PG45] gi|312950489|gb|ADR25084.1| ATPase, AAA family [Mycoplasma bovis PG45] Length = 407 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 9/109 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL++ GQ + LK + AK R + +F G G GKT+ A +A +LG+ Sbjct: 8 LRPKTLDDIIGQKQVVDLLK---KVAKDRIHS--SFIFFGESGTGKTSSAVALANDLGLK 62 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + + V +KA L L D +VL IDEIHRL+ ++IL +E Sbjct: 63 YNYFNASVNSKA----ELTKMLSDNEVLIIDEIHRLNKDKQDILLSYLE 107 >gi|223983856|ref|ZP_03634020.1| hypothetical protein HOLDEFILI_01301 [Holdemania filiformis DSM 12042] gi|223964180|gb|EEF68528.1| hypothetical protein HOLDEFILI_01301 [Holdemania filiformis DSM 12042] Length = 420 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 12/134 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+E GQ +V IE + L ++F GPPG GKTTLA V+A EL Sbjct: 9 MRPETLDEVIGQQHLIGPGQVIRRCIEQGR-----LFSMIFYGPPGTGKTTLASVLANEL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 + +R + V +L + + D VL IDE+HRL+ +++L P +E+ ++ + Sbjct: 64 HLPYRLFNA-VTGNKKELDTIFEEAKFYDGLVLIIDEVHRLNKDKQDLLLPHVENGRI-I 121 Query: 137 MVGEGPSARSVKIN 150 ++G S ++ IN Sbjct: 122 LIGATTSNPTMAIN 135 >gi|169829377|ref|YP_001699535.1| Holliday junction ATP-dependent DNA helicase ruvB [Lysinibacillus sphaericus C3-41] gi|168993865|gb|ACA41405.1| Holliday junction ATP-dependent DNA helicase ruvB [Lysinibacillus sphaericus C3-41] Length = 75 Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 1/61 (1%) Query: 5 EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 E +++ S D L LRP+ L ++ GQ + NL++FIEAAK R E+LDHVL GPP Sbjct: 3 ERMMASEASGYDEQFELSLRPQRLAQYIGQHKVKENLQIFIEAAKLRQESLDHVLLYGPP 62 Query: 64 G 64 G Sbjct: 63 G 63 >gi|295396093|ref|ZP_06806276.1| AAA family ATPase [Brevibacterium mcbrellneri ATCC 49030] gi|294971034|gb|EFG46926.1| AAA family ATPase [Brevibacterium mcbrellneri ATCC 49030] Length = 460 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 11/120 (9%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+++E GQ S L+ E+ V+ GPPG+GKTT+A V+ Sbjct: 20 MRPRSIDELVGQDHLTFKGSPLRQLAESDPRGVAGATSVILYGPPGVGKTTIAHAVSHAE 79 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-EDRD------VLFIDEIHRLSIIVEEILYPAMED 131 G F S + A D+ ++ N DR+ VLF+DEIHR S ++ L PA+E+ Sbjct: 80 GRRFVELSA-ITAGVKDVREVIENARRDREMRGLTTVLFLDEIHRFSKAQQDALLPAVEN 138 >gi|256850208|ref|ZP_05555637.1| recombination factor protein RarA [Lactobacillus crispatus MV-1A-US] gi|256712845|gb|EEU27837.1| recombination factor protein RarA [Lactobacillus crispatus MV-1A-US] Length = 420 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL + GQ E K K +L GPPG GKT+LAQ++A+E Sbjct: 11 MRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAKENDYP 68 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 F S + + KA L ++ + + VL IDEIHR++ +++ L P +E+ + L+VG Sbjct: 69 FASFNASIDNKA-QLNNIINAYKYQTLVLLIDEIHRMTKNLQDFLLPYLENGHV-LLVG 125 >gi|239932410|ref|ZP_04689363.1| recombination factor protein RarA [Streptomyces ghanaensis ATCC 14672] gi|291440776|ref|ZP_06580166.1| recombination factor protein RarA [Streptomyces ghanaensis ATCC 14672] gi|291343671|gb|EFE70627.1| recombination factor protein RarA [Streptomyces ghanaensis ATCC 14672] Length = 451 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + + V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLKPGSPLRRLVGEGSSGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 87 NKRFVELSA-ITAGVKEVRAVIDGARRASGGYGQETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|115380346|ref|ZP_01467349.1| AAA ATPase, central region [Stigmatella aurantiaca DW4/3-1] gi|115362645|gb|EAU61877.1| AAA ATPase, central region [Stigmatella aurantiaca DW4/3-1] Length = 284 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL +F GQ L+ IE + + ++ GPPG GKTTLA+V+A+ Sbjct: 22 MRPSTLADFAGQEHLTGEGRFLRRVIEQ-----DQVPSLILWGPPGTGKTTLARVIAQAT 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 G +F S S V++ D+ + ++ R +LFIDEIHR + ++ L P +E Sbjct: 77 GASFESLSA-VLSGVKDIRETVARAQERWRLHRQRTLLFIDEIHRFNKSQQDALLPHVEK 135 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLI 157 + L+ E PS LSR ++ Sbjct: 136 GTVTLIGATTENPSFEVNAALLSRARVV 163 >gi|310823298|ref|YP_003955656.1| ATPase [Stigmatella aurantiaca DW4/3-1] gi|309396370|gb|ADO73829.1| AAA ATPase [Stigmatella aurantiaca DW4/3-1] Length = 443 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL +F GQ L+ IE + + ++ GPPG GKTTLA+V+A+ Sbjct: 22 MRPSTLADFAGQEHLTGEGRFLRRVIEQ-----DQVPSLILWGPPGTGKTTLARVIAQAT 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 G +F S S V++ D+ + ++ R +LFIDEIHR + ++ L P +E Sbjct: 77 GASFESLSA-VLSGVKDIRETVARAQERWRLHRQRTLLFIDEIHRFNKSQQDALLPHVEK 135 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLI 157 + L+ E PS LSR ++ Sbjct: 136 GTVTLIGATTENPSFEVNAALLSRARVV 163 >gi|227878587|ref|ZP_03996511.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus JV-V01] gi|293380972|ref|ZP_06627004.1| recombination factor protein RarA [Lactobacillus crispatus 214-1] gi|227861822|gb|EEJ69417.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus JV-V01] gi|290922469|gb|EFD99439.1| recombination factor protein RarA [Lactobacillus crispatus 214-1] Length = 420 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL + GQ E K K +L GPPG GKT+LAQ++A+E Sbjct: 11 MRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAKENDYP 68 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 F S + + KA L ++ + + VL IDEIHR++ +++ L P +E+ + L+VG Sbjct: 69 FASFNASIDNKA-QLNNIINAYKYQTLVLLIDEIHRMTKNLQDFLLPYLENGHV-LLVG 125 >gi|228910235|ref|ZP_04074053.1| hypothetical protein bthur0013_43830 [Bacillus thuringiensis IBL 200] gi|228849399|gb|EEM94235.1| hypothetical protein bthur0013_43830 [Bacillus thuringiensis IBL 200] Length = 428 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 132/330 (40%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPKNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160 Query: 190 TIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 + + ++G + VTDEA A S G R A L + F A IT E Sbjct: 161 SALEDKEKGLGKYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|312977419|ref|ZP_07789167.1| ATPase, AAA family [Lactobacillus crispatus CTV-05] gi|310895850|gb|EFQ44916.1| ATPase, AAA family [Lactobacillus crispatus CTV-05] Length = 420 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL + GQ E K K +L GPPG GKT+LAQ++A+E Sbjct: 11 MRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAKENDYP 68 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 F S + + KA L ++ + + VL IDEIHR++ +++ L P +E+ + L+VG Sbjct: 69 FASFNASIDNKA-QLNNIINAYKYQTFVLLIDEIHRMTKNLQDFLLPYLENGHV-LLVG 125 >gi|169794256|ref|YP_001712049.1| recombination factor protein RarA [Acinetobacter baumannii AYE] gi|213158747|ref|YP_002321168.1| ATPase, AAA family [Acinetobacter baumannii AB0057] gi|215481814|ref|YP_002323996.1| ATPase family associated with various cellular activities (AAA) family protein [Acinetobacter baumannii AB307-0294] gi|301345879|ref|ZP_07226620.1| recombination factor protein RarA [Acinetobacter baumannii AB056] gi|301509947|ref|ZP_07235184.1| recombination factor protein RarA [Acinetobacter baumannii AB058] gi|301594525|ref|ZP_07239533.1| recombination factor protein RarA [Acinetobacter baumannii AB059] gi|332850334|ref|ZP_08432668.1| recombination factor protein RarA [Acinetobacter baumannii 6013150] gi|332871558|ref|ZP_08440052.1| recombination factor protein RarA [Acinetobacter baumannii 6013113] gi|169147183|emb|CAM85042.1| putative ATPase [Acinetobacter baumannii AYE] gi|213057907|gb|ACJ42809.1| ATPase, AAA family [Acinetobacter baumannii AB0057] gi|213987786|gb|ACJ58085.1| ATPase family associated with various cellular activities (AAA) family protein [Acinetobacter baumannii AB307-0294] gi|332730792|gb|EGJ62102.1| recombination factor protein RarA [Acinetobacter baumannii 6013150] gi|332731412|gb|EGJ62704.1| recombination factor protein RarA [Acinetobacter baumannii 6013113] Length = 421 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VIA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR +TL + + LL N LQ D+F ++ Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQMLLNNALQNDKF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 + IE+ ++Q A Sbjct: 176 YIHIEEYDALLQFAA 190 >gi|297588295|ref|ZP_06946938.1| AAA family ATPase [Finegoldia magna ATCC 53516] gi|297573668|gb|EFH92389.1| AAA family ATPase [Finegoldia magna ATCC 53516] Length = 431 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 16/147 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L+++ GQ K+ KA + + ++F GPPG GKTTLA++++ + Sbjct: 22 LRPKSLDKYFGQSHVVGEGKLLNRLIKA--DKIPSMIFYGPPGTGKTTLAEIISNQTNSL 79 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S VI+ A + ++ + VLFIDEIHR + ++ L +ED Sbjct: 80 FERLSAISSGVKDIREVISTAKNNLSMYNK---KTVLFIDEIHRFNKSQQDALLGYVEDG 136 Query: 133 QLDLM--VGEGPSARSVKINLSRFTLI 157 + L+ E P K LSR +I Sbjct: 137 TITLIGATTENPFFEVNKALLSRCQII 163 >gi|325287034|ref|YP_004262824.1| AAA ATPase central domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322488|gb|ADY29953.1| AAA ATPase central domain protein [Cellulophaga lytica DSM 7489] Length = 425 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 65/143 (45%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL E+ Q + + K L ++ GPPG GKTTLA ++A E+ Sbjct: 9 VRPKTLTEYVSQTHLVGDNGTLTQQIKRGI--LPSLILWGPPGTGKTTLANIIANEIDRP 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VI KA L T +LFIDEIHR S ++ L A+E Sbjct: 67 FYTLSAISSGVKDVREVIEKAKKSGGLFTT--KNPILFIDEIHRFSKSQQDSLLAAVEKG 124 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147 >gi|262046401|ref|ZP_06019363.1| recombination factor protein RarA [Lactobacillus crispatus MV-3A-US] gi|260573272|gb|EEX29830.1| recombination factor protein RarA [Lactobacillus crispatus MV-3A-US] Length = 421 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL + GQ E K K +L GPPG GKT+LAQ++A+E Sbjct: 12 MRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAKENDYP 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 F S + + KA L ++ + + VL IDEIHR++ +++ L P +E+ + L+VG Sbjct: 70 FASFNASIDNKA-QLNNIINAYKYQTLVLLIDEIHRMTKNLQDFLLPYLENGHV-LLVG 126 >gi|319952206|ref|YP_004163473.1| aaa atpase central domain protein [Cellulophaga algicola DSM 14237] gi|319420866|gb|ADV47975.1| AAA ATPase central domain protein [Cellulophaga algicola DSM 14237] Length = 425 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TLE++ Q+ + K + ++ GPPG GKTTLA ++A E G Sbjct: 9 IRPKTLEDYISQLHLVGDNGSLTHQIKKGI--IPSLILWGPPGTGKTTLANIIAMESGRP 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VI KA L T +LFIDEIHR S ++ L A+E Sbjct: 67 FYTLSAINSGVKDIREVIDKAKQSGGLFTT--KNPILFIDEIHRFSKSQQDSLLAAVEKG 124 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147 >gi|110678756|ref|YP_681763.1| recombination factor protein RarA [Roseobacter denitrificans OCh 114] gi|109454872|gb|ABG31077.1| ATPase, AAA family protein, putative [Roseobacter denitrificans OCh 114] Length = 441 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 9/117 (7%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LLRP++L+E GQ + + + AE L ++ GPPG+GKTT+A+++A + Sbjct: 25 LLRPQSLDEVIGQEKLLAEDGPL--GSMLAAERLTSLILWGPPGVGKTTIARLLAHRTDL 82 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131 +F S + + DL + DR LFIDEIHR + + L P MED Sbjct: 83 HFEQISA-IFSGVSDLKKVFQAARDRASLGQGTFLFIDEIHRFNKAQLDSLLPVMED 138 >gi|297584737|ref|YP_003700517.1| AAA ATPase central domain-containing protein [Bacillus selenitireducens MLS10] gi|297143194|gb|ADH99951.1| AAA ATPase central domain protein [Bacillus selenitireducens MLS10] Length = 443 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+E GQ + A +A + L ++F GPPG GKTTLA+V+A Sbjct: 21 MRPVTLDEIFGQTHIIGEGTLLRRAIEA--DRLSPMIFHGPPGTGKTTLAKVIANTTAAA 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + V A D+ +++ + R VLFIDEIHR + ++ L P +ED Sbjct: 79 FEQLNA-VTAGIKDVREMVSQAKSRLDYDHKRTVLFIDEIHRFNKGQQDALLPHVED 134 >gi|78776412|ref|YP_392727.1| recombination factor protein RarA [Sulfurimonas denitrificans DSM 1251] gi|78496952|gb|ABB43492.1| Recombination protein MgsA [Sulfurimonas denitrificans DSM 1251] Length = 393 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 12/117 (10%) Query: 21 LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP +E GQ + L+V + L H F GP G GKT++A+++A+ Sbjct: 7 LLRPSNFDELIGQDHLSKDKAPLRVLCQKG-----VLGHSFFFGPSGTGKTSIARIIAKT 61 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMED 131 + + F + I K L A+ ++ + ++FIDE+HRL+ +E+L P ME+ Sbjct: 62 MELPFYEFNATSI-KIEQLRAIFEQYKNTLQKPLIFIDEVHRLAKNQQEVLLPVMEN 117 >gi|163733781|ref|ZP_02141223.1| ATPase, AAA family protein, putative [Roseobacter litoralis Och 149] gi|161392892|gb|EDQ17219.1| ATPase, AAA family protein, putative [Roseobacter litoralis Och 149] Length = 441 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 15/120 (12%) Query: 21 LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP++L+E GQ + + L + A + + ++ GPPG+GKTT+A+++A + Sbjct: 25 LLRPQSLDEVIGQEKLLAEDGPLGSMLAAGRVTS-----LILWGPPGVGKTTIARLLAHQ 79 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV------LFIDEIHRLSIIVEEILYPAMED 131 ++F S + + DL + DR V LFIDEIHR + + L P MED Sbjct: 80 TDLHFEQISA-IFSGVSDLKKVFQAARDRAVIGQGTFLFIDEIHRFNKAQLDSLLPVMED 138 >gi|299140803|ref|ZP_07033941.1| ATPase, AAA family [Prevotella oris C735] gi|298577769|gb|EFI49637.1| ATPase, AAA family [Prevotella oris C735] Length = 423 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 9 MRPHSLDEYVGQQHLVGRGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ ++ +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVRDVIEKAKNNRFFNTASPILFIDEIHRFSKSQQDSLLGAVER 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|302550147|ref|ZP_07302489.1| recombination factor protein RarA [Streptomyces viridochromogenes DSM 40736] gi|302467765|gb|EFL30858.1| recombination factor protein RarA [Streptomyces viridochromogenes DSM 40736] Length = 450 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 12/127 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + A A VL GPPG GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLKPGSPLRRLVGEASGPA-GPSSVLLWGPPGTGKTTLAYVVSKAT 85 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 86 DARFVELSA-ITAGVKEVRAVIDGARRASGGYGKETVLFLDEIHRFSKAQQDSLLPAVEN 144 Query: 132 FQLDLMV 138 + L+ Sbjct: 145 RWVTLIA 151 >gi|325270474|ref|ZP_08137076.1| AAA family ATPase [Prevotella multiformis DSM 16608] gi|324987197|gb|EGC19178.1| AAA family ATPase [Prevotella multiformis DSM 16608] Length = 406 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+++ GQ V + L+ I++ + + + GPPG+GKTTLAQ++A L Sbjct: 8 MRPRTLDDYIGQQHLVGEGAVLRRMIDSGR-----IASFILWGPPGVGKTTLAQIIAHRL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 ETPFYTLSA-VTSGVKDVRDVIERAQKGRFFNSASPILFIDEIHRFSKSQQDSLLGAVEK 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148 >gi|157375266|ref|YP_001473866.1| recombination factor protein RarA [Shewanella sediminis HAW-EB3] gi|157317640|gb|ABV36738.1| AAA ATPase, central domain protein [Shewanella sediminis HAW-EB3] Length = 443 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 35/262 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP T+ ++ GQ L+ +EA +A + ++F GPPG GKTTLA++VA Sbjct: 19 MRPETISQYIGQTHLLGEGKPLRKALEAGRAHS-----MMFWGPPGTGKTTLAELVANYA 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + ++ + + ++ R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VTSGVKEIRTAIEHAKNVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + + VG S +IN + + RV L+ D +R T Sbjct: 133 GTV-IFVGATTENPSFEIN----NALLSRARVYLIKKLTNDEIVHIVRQAL-------TD 180 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE-IADAAL 250 +RG L + D A ++A S G R A L+ + D +A + + E I + A Sbjct: 181 EERGLGKRKLLIPDNVALKLANVSEGDARKALNLIELMSDM--LADGGSFSEEMIIEVAG 238 Query: 251 LRLAIDKMGFDQLDLRYLTMIA 272 +LA GFD+ ++ +I+ Sbjct: 239 QQLA----GFDKNGDQFYDLIS 256 >gi|241948511|ref|XP_002416978.1| DNA-dependent ATPase (MGS1), putative; homolog of human Werner helicase interacting protein (WHIP), putative [Candida dubliniensis CD36] gi|223640316|emb|CAX44566.1| DNA-dependent ATPase (MGS1), putative [Candida dubliniensis CD36] Length = 677 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 18/134 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L++F GQ V L+ I+A + + L G PG+GKT+LA+++A+ Sbjct: 171 LRPKSLDDFFGQEKLVGKNGALRNIIQA-----DIIPSFLLWGVPGIGKTSLARIIAKTT 225 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F SG + + A L + E+ R +LF+DEIHR + V+++L P +E Sbjct: 226 SCKFVELSG-IDSNAKRLKEVFVQAENHKNLSGQRTILFLDEIHRFNKAVQDLLLPVIEK 284 Query: 132 FQLDLM--VGEGPS 143 L ++ E PS Sbjct: 285 GTLTVIGATTENPS 298 >gi|313637743|gb|EFS03102.1| replication-associated recombination protein A [Listeria seeligeri FSL S4-171] Length = 427 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKSLDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|313633161|gb|EFS00045.1| replication-associated recombination protein A [Listeria seeligeri FSL N1-067] Length = 427 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKSLDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|256379279|ref|YP_003102939.1| recombination factor protein RarA [Actinosynnema mirum DSM 43827] gi|255923582|gb|ACU39093.1| AAA ATPase central domain protein [Actinosynnema mirum DSM 43827] Length = 448 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 16/120 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + + L+ +E A A VL GPPG GKTTLA +V++ Sbjct: 28 MRPRTLDEVVGQDHLLGPGAPLRRLVEGA-----APASVLLYGPPGTGKTTLATLVSQAT 82 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 G F + S + A ++ A++ + R VLFIDE+HR S ++ L A+ED Sbjct: 83 GRRFAALSA-LSAGVKEVRAVIEEAKRRLVRSGEATVLFIDEVHRFSKTQQDALLGAVED 141 >gi|148263766|ref|YP_001230472.1| recombination factor protein RarA [Geobacter uraniireducens Rf4] gi|146397266|gb|ABQ25899.1| Recombination protein MgsA [Geobacter uraniireducens Rf4] Length = 435 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 40/217 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL E+ GQ K+ + + + L ++F GPPG GKTTLA+++A + Sbjct: 22 MRPRTLAEYVGQEHLLGPGKLLRQLIET--DQLTSLIFWGPPGSGKTTLARIIAGATKSH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED--F 132 F S +++ ++ ++ +D R +LF+DEIHR + ++ P +E F Sbjct: 80 FIFFSA-ILSGIKEIREIVKEADDIRKFHGKRTILFVDEIHRFNKSQQDAFLPYVERGVF 138 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 + E PS + LSR + L+ NPL + E++ I+ Sbjct: 139 TIIGATTENPSFEVIAPLLSRCKV--------LVLNPLTE-------------EEITGIL 177 Query: 193 -------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 +RG LA+ D+A +A ++ G R+A Sbjct: 178 RQALADKERGLGALDLAIEDDALTFMAEQAGGDARVA 214 >gi|94985501|ref|YP_604865.1| recombination factor protein RarA [Deinococcus geothermalis DSM 11300] gi|94555782|gb|ABF45696.1| AAA ATPase, central region [Deinococcus geothermalis DSM 11300] Length = 451 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 110/262 (41%), Gaps = 51/262 (19%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL E GQ + L ++ + L ++F GPPG+GKTTLA+++A E+ Sbjct: 34 LRPRTLAEVVGQGHLLGPGRPLTRLLQGGR-----LGSLIFWGPPGVGKTTLARLIASEV 88 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G +F S V A D+ + E +LF+DEIHR + ++ L P +E Sbjct: 89 GAHFIPLSA-VSAGVKDVREAVMEAERLRARGQPTILFLDEIHRFNKAQQDALLPHVESG 147 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATT-RVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L TLI ATT NP + L ED++ + Sbjct: 148 LL--------------------TLIGATTENPSFEVNPALRSRARTLVLEPLSQEDVRGL 187 Query: 192 VQRGAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH--AKTITREI 245 ++R L G+A EA +A R+A RR EVA A +T E Sbjct: 188 LERALADPRGLPGVAAQPEALDLLA-------RLADGDARRALGTLEVAATLANPVTSEA 240 Query: 246 ADAALLRL--AIDKMGFDQLDL 265 A R A+DK G D +L Sbjct: 241 VREAFGRHLPAMDKNGEDFYNL 262 >gi|330981392|gb|EGH79495.1| recombination factor protein RarA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 440 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 11/136 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRANNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLAKLLAKVSDAH 74 Query: 82 FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V+A ++ + R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL 133 Query: 135 DLMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 -IFIGATTENPSFELN 148 >gi|308177513|ref|YP_003916919.1| replication-associated recombination protein A [Arthrobacter arilaitensis Re117] gi|307744976|emb|CBT75948.1| replication-associated recombination protein A [Arthrobacter arilaitensis Re117] Length = 468 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 13/134 (9%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP++L+E GQ S L+ E + V+ GPPG+GKTT+A V+AR Sbjct: 31 MRPKSLDELVGQQHLLGPGSPLRQLAENPETGLAGPASVILYGPPGIGKTTIAHVIARAT 90 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-EDRD------VLFIDEIHRLSIIVEEILYPAMED 131 F S + A D+ ++ +DRD VLF+DEIHR + ++ L P +E+ Sbjct: 91 DRKFVELSA-ITAGVKDVRRVIEQAKDDRDLRGVTTVLFLDEIHRFNKAQQDALLPGVEN 149 Query: 132 FQLDLMVG--EGPS 143 + L+ E PS Sbjct: 150 RVVVLVAATTENPS 163 >gi|291320002|ref|YP_003515260.1| AAA family ATPase [Mycoplasma agalactiae] gi|290752331|emb|CBH40302.1| ATPase, AAA family [Mycoplasma agalactiae] Length = 404 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 9/109 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL++ GQ LK AR +F G G GKT+ A +A +LG+ Sbjct: 8 LRPKTLDDIIGQKSVVELLKRV-----ARDRIYSSFIFFGESGTGKTSAAVALANDLGLK 62 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + + V +KA L+ L D DVL IDEIHRL+ ++IL +E Sbjct: 63 YDYFNASVNSKA----ELIKMLADNDVLIIDEIHRLNKDKQDILLSYLE 107 >gi|255262261|ref|ZP_05341603.1| recombination factor protein RarA [Thalassiobium sp. R2A62] gi|255104596|gb|EET47270.1| recombination factor protein RarA [Thalassiobium sp. R2A62] Length = 464 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L E GQ + + L V + + ++L ++F GPPG+GKTT+A+++A E Sbjct: 52 LRPKSLGEVIGQDQVLGPEAPLGVMLAS-----QSLSSLIFWGPPGVGKTTIARLLADET 106 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 107 DLHFIQISAIFTGVPELRKVFEAAKIRRQNGKGTLLFVDEIHRFNKAQQDGFLPHMEDGT 166 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 167 I-LLVGATTENPSFELN 182 >gi|29833388|ref|NP_828022.1| recombination factor protein RarA [Streptomyces avermitilis MA-4680] gi|29610511|dbj|BAC74557.1| putative ATP/GTP-binding protein [Streptomyces avermitilis MA-4680] Length = 453 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + V+ GPPG GKTTLA VV++ Sbjct: 29 MRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVILWGPPGTGKTTLAYVVSKAT 88 Query: 79 GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 89 NKRFVELSA-ITAGVKEVRAVIDGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 147 Query: 132 FQLDLMV 138 + L+ Sbjct: 148 RWVTLIA 154 >gi|114562972|ref|YP_750485.1| recombination factor protein RarA [Shewanella frigidimarina NCIMB 400] gi|114334265|gb|ABI71647.1| Recombination protein MgsA [Shewanella frigidimarina NCIMB 400] Length = 443 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 102/232 (43%), Gaps = 26/232 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RPR + E+ GQ K +A +A RA ++ L GPPG GKTTLA+++A Sbjct: 19 MRPRDISEYIGQAHLLGEGKPLRKALEANRAHSM---LLWGPPGTGKTTLAELIAHYANA 75 Query: 81 NFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + S V + D+ A + + R +LF+DE+HR + ++ P +ED Sbjct: 76 HVERISA-VTSGVKDIRAAIEQAKAIAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGT 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + + +G S +IN + + RV L+ D + + ++E Sbjct: 135 V-IFIGATTENPSFEIN----NALLSRARVYLINRLSSDEINLIVTQALVDVE------- 182 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 RG L + + A ++A S G R A LL + D VA A T E+ Sbjct: 183 RGLGKRQLILPADVAKQLADISDGDARKALNLLELMSDL--VADAGAFTTEM 232 >gi|83312581|ref|YP_422845.1| recombination factor protein RarA [Magnetospirillum magneticum AMB-1] gi|82947422|dbj|BAE52286.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Magnetospirillum magneticum AMB-1] Length = 430 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TLEE GQ + A + L + A + L V+ GPPG GKTT+A+++A + Sbjct: 18 LRPATLEEVVGQSHLLAATAPLGRMLAAGR-----LASVILWGPPGCGKTTIARLLAERV 72 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S V + DL + E R +LF+DEIHR + ++ P +E+ Sbjct: 73 GLYFEPLSA-VFSGVADLRKVFDAAEKRKQTGRSTLLFVDEIHRFNRAQQDGFLPYVENG 131 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 132 TV-VLVGATTENPSFELN 148 >gi|290961834|ref|YP_003493016.1| ATP/GTP binding protein [Streptomyces scabiei 87.22] gi|260651360|emb|CBG74482.1| conserved ATP/GTP binding protein [Streptomyces scabiei 87.22] Length = 451 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + + V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLKPGSPLRRLVGESGGGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 87 NKRFVELSA-ITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|297198342|ref|ZP_06915739.1| recombination factor protein RarA [Streptomyces sviceus ATCC 29083] gi|197714396|gb|EDY58430.1| recombination factor protein RarA [Streptomyces sviceus ATCC 29083] Length = 451 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 87 NKRFVELSA-ITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|289434794|ref|YP_003464666.1| ATPase, AAA family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171038|emb|CBH27580.1| ATPase, AAA family [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 427 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKSLDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|110638794|ref|YP_679003.1| recombination factor protein RarA [Cytophaga hutchinsonii ATCC 33406] gi|110281475|gb|ABG59661.1| ATPase, AAA family [Cytophaga hutchinsonii ATCC 33406] Length = 420 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 13/139 (9%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L++ GQ + F+E K + ++ GPPG+GKTTLAQ++A+ + Sbjct: 10 MRPVLLQDVYGQQHLIGEGMVFRRFVEEGK-----IPSMILWGPPGVGKTTLAQLLAKTV 64 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 G+ F + S + + ++ ++ N + + VLFIDEIHR S ++ L A+E + L Sbjct: 65 GLPFYTLSA-ISSGVKEVREVIANAQTDGKAVLFIDEIHRFSKSQQDALLGAVEKGTIQL 123 Query: 137 M--VGEGPSARSVKINLSR 153 + E PS + LSR Sbjct: 124 IGATTENPSFEVIPALLSR 142 >gi|303237626|ref|ZP_07324186.1| recombination factor protein RarA [Prevotella disiens FB035-09AN] gi|302482078|gb|EFL45113.1| recombination factor protein RarA [Prevotella disiens FB035-09AN] Length = 424 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 12/141 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E+ GQ V +R + + G PG+GKTTLAQ++A +L Sbjct: 8 MRPRTLDEYVGQSHLVGKGAVLRNMIDSRH--ISSFILWGSPGVGKTTLAQIIANKLETP 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S + + D+ +++ + +LFIDEIHR S ++ L A+E + Sbjct: 66 FYTLSA-IASGVKDVRSVIEKAKSNRFFNAPSPILFIDEIHRFSKSQQDSLLGAVEKGVV 124 Query: 135 DLM--VGEGPSARSVKINLSR 153 L+ E PS ++ LSR Sbjct: 125 TLIGATTENPSFEVIRPLLSR 145 >gi|296139682|ref|YP_003646925.1| ATPase AAA [Tsukamurella paurometabola DSM 20162] gi|296027816|gb|ADG78586.1| AAA ATPase central domain protein [Tsukamurella paurometabola DSM 20162] Length = 456 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ + + L+ IE A A + V+ GPPG GKTT+A +++ Sbjct: 40 MRPRSLDEVLGQEHLLGPGTPLRRLIEGAGAAS-----VILYGPPGTGKTTIASLISGAT 94 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A D+ A++ ++++ VLFIDE+HR S ++ L A+E+ Sbjct: 95 GRRFEALSA-LSAGVKDVRAVIEMARRRLLVDEQTVLFIDEVHRFSKAQQDALLAAVENR 153 Query: 133 QLDLMVG--EGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 154 VVLLVAATTENPSFSVVSPLLSR 176 >gi|302380490|ref|ZP_07268955.1| recombination factor protein RarA [Finegoldia magna ACS-171-V-Col3] gi|302311433|gb|EFK93449.1| recombination factor protein RarA [Finegoldia magna ACS-171-V-Col3] Length = 431 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L+++ GQ K+ KA + + ++F GPPG GKTTLA++++ + Sbjct: 22 LRPKSLDKYFGQSHVVGEGKLLNRLIKA--DKIPSMIFYGPPGTGKTTLAEIISNQTNSL 79 Query: 82 FRSTSGPVIAKAGDLAALL----TNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + D+ ++ TNL + VLFIDEIHR + ++ L +ED + Sbjct: 80 FERLSA-ISNGVKDIREVISTAKTNLSMYNKKTVLFIDEIHRFNKSQQDALLGYVEDGTI 138 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E P K LSR +I Sbjct: 139 TLIGATTENPFFEVNKALLSRCQII 163 >gi|308049686|ref|YP_003913252.1| Recombination protein MgsA [Ferrimonas balearica DSM 9799] gi|307631876|gb|ADN76178.1| Recombination protein MgsA [Ferrimonas balearica DSM 9799] Length = 442 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 21/141 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+++ GQ + L+ +EA +A + +L GPPG GKTTLA++VAR Sbjct: 19 MRPETLDDYVGQEHLLGPGKPLRAALEAGRAHS-----MLLWGPPGTGKTTLAELVARYA 73 Query: 79 GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 + TSG I KA D+AA + +LF+DE+HR + ++ P + Sbjct: 74 NAHVERISAVTSGVKEIRAAIDKAKDIAAAHGR---QTLLFVDEVHRFNKSQQDAFLPHI 130 Query: 130 EDFQLDLMVGEGPSARSVKIN 150 ED + + +G S ++N Sbjct: 131 EDGTV-IFIGATTENPSFEVN 150 >gi|238879198|gb|EEQ42836.1| conserved hypothetical protein [Candida albicans WO-1] Length = 678 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 18/134 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L++F GQ V L+ I+A + + L G PG+GKT+LA+++A+ Sbjct: 170 LRPKSLDDFFGQEKLVGENGALRNIIQA-----DIIPSFLLWGVPGIGKTSLARIIAKTT 224 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F SG + + A L + E+ R +LF+DEIHR + V+++L P +E Sbjct: 225 SCKFVELSG-IDSNAKRLKEVFVQAENHKNLSGQRTILFLDEIHRFNKAVQDLLLPVIEK 283 Query: 132 FQLDLM--VGEGPS 143 L ++ E PS Sbjct: 284 GTLTVIGATTENPS 297 >gi|56695429|ref|YP_165777.1| recombination factor protein RarA [Ruegeria pomeroyi DSS-3] gi|56677166|gb|AAV93832.1| ATPase, AAA family [Ruegeria pomeroyi DSS-3] Length = 438 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L E GQ + + L V + + +L ++F GPPG+GKTT+A+++A+E Sbjct: 25 LRPQSLGEVIGQQQVLGPEAPLGVMLASG-----SLSSLVFWGPPGVGKTTIARLLAQET 79 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 80 DLHFVQISAIFTGVPDLKKVFEAARIRRGNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 139 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 140 I-LLVGATTENPSFELN 155 >gi|295396913|ref|ZP_06807037.1| AAA family ATPase [Aerococcus viridans ATCC 11563] gi|294974847|gb|EFG50550.1| AAA family ATPase [Aerococcus viridans ATCC 11563] Length = 423 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 5/111 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR++EE GQ K+ KA L ++ GPPG+GKT++A +A Sbjct: 11 MRPRSIEEVVGQQHLVGEGKIIFRMVKAMQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 68 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + +K DL A++ VL +DEIHRL ++ L P +E Sbjct: 69 FRKLNAATDSKK-DLQAVVEEAKFSGGIVLLLDEIHRLDKTKQDFLLPHLE 118 >gi|288549436|ref|ZP_05967088.2| hypothetical protein ENTCAN_05464 [Enterobacter cancerogenus ATCC 35316] gi|288319085|gb|EFC58023.1| replication-associated recombination protein A [Enterobacter cancerogenus ATCC 35316] Length = 428 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 98/226 (43%), Gaps = 33/226 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 1 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 56 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + +G S ++N + + + RV LL + L +IE + T Sbjct: 116 I-FFIGATTENPSFELN----SALLSRARVYLLKS-----------LTTEDIEHVLTQAM 159 Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235 RG + + DE IA + G R A L + D AEV Sbjct: 160 SDKARGYGGQDIVLPDETRLAIAQQVNGDARRALNTLEMMADMAEV 205 >gi|281425637|ref|ZP_06256550.1| ATPase, AAA family [Prevotella oris F0302] gi|281400224|gb|EFB31055.1| ATPase, AAA family [Prevotella oris F0302] Length = 423 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E+ GQ L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 9 MRPHSLDEYVGQQHLVGRGVVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ ++ +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVRDVIEKAKNNRFFNTASPILFIDEIHRFSKSQQDSLLGAVER 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|320093742|ref|ZP_08025601.1| AAA family ATPase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979327|gb|EFW10818.1| AAA family ATPase [Actinomyces sp. oral taxon 178 str. F0338] Length = 447 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 13/134 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +EE GQ + + L+ +E A + A+ V+ GPPG GKTTLA +VAR Sbjct: 27 MRPARIEEVVGQDHLLGEGAPLRRLLEPASGASVAVSSVVLWGPPGTGKTTLAYLVARTT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F S V + D+ ++ R VLF+DE+HR S ++ L PA+E+ Sbjct: 87 SRRFEELSA-VSSGVRDIRDVVGGARRRLAAGGGETVLFVDEVHRFSKSQQDALLPAVEN 145 Query: 132 FQLDLMVG--EGPS 143 + L+ E PS Sbjct: 146 RWVVLVAATTENPS 159 >gi|169824318|ref|YP_001691929.1| ATPase [Finegoldia magna ATCC 29328] gi|167831123|dbj|BAG08039.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Finegoldia magna ATCC 29328] Length = 431 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L+++ GQ K+ KA + + ++F GPPG GKTTLA++++ + Sbjct: 22 LRPKSLDKYFGQSHVVGEGKLLNRLIKA--DKIPSMIFYGPPGTGKTTLAEIISNQTNSL 79 Query: 82 FRSTSGPVIAKAGDLAALL----TNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + D+ ++ TNL + VLFIDEIHR + ++ L +ED + Sbjct: 80 FERLSA-ISNGVKDIREVISTAKTNLSMYNKKTVLFIDEIHRFNKSQQDALLGYVEDGTI 138 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E P K LSR +I Sbjct: 139 TLIGATTENPFFEVNKALLSRCQII 163 >gi|21220007|ref|NP_625786.1| recombination factor protein RarA [Streptomyces coelicolor A3(2)] gi|256788895|ref|ZP_05527326.1| recombination factor protein RarA [Streptomyces lividans TK24] gi|289772781|ref|ZP_06532159.1| recombination factor protein RarA [Streptomyces lividans TK24] gi|8249965|emb|CAB93386.1| conserved ATP/GTP binding protein [Streptomyces coelicolor A3(2)] gi|289702980|gb|EFD70409.1| recombination factor protein RarA [Streptomyces lividans TK24] Length = 451 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + + V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLKPGSPLRRLVGEGASGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 87 NKRFVELSA-ITAGVKEVRAVIDGARRAVGGYGKETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|68468917|ref|XP_721517.1| hypothetical protein CaO19.3019 [Candida albicans SC5314] gi|68469463|ref|XP_721246.1| hypothetical protein CaO19.10537 [Candida albicans SC5314] gi|46443155|gb|EAL02439.1| hypothetical protein CaO19.10537 [Candida albicans SC5314] gi|46443437|gb|EAL02719.1| hypothetical protein CaO19.3019 [Candida albicans SC5314] Length = 678 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 18/134 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L++F GQ V L+ I+A + + L G PG+GKT+LA+++A+ Sbjct: 170 LRPKSLDDFFGQEKLVGENGALRNIIQA-----DIIPSFLLWGVPGIGKTSLARIIAKTT 224 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F SG + + A L + E+ R +LF+DEIHR + V+++L P +E Sbjct: 225 SCKFVELSG-IDSNAKRLKEVFVQAENHKNLSGQRTILFLDEIHRFNKAVQDLLLPVIEK 283 Query: 132 FQLDLM--VGEGPS 143 L ++ E PS Sbjct: 284 GTLTVIGATTENPS 297 >gi|294782754|ref|ZP_06748080.1| ATPase, AAA family [Fusobacterium sp. 1_1_41FAA] gi|294481395|gb|EFG29170.1| ATPase, AAA family [Fusobacterium sp. 1_1_41FAA] Length = 407 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 104/241 (43%), Gaps = 53/241 (21%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77 LRP+ L++F GQ K+ + R AL + +F GPPG GK++L ++++ Sbjct: 18 LRPKNLDDFVGQE------KLLGKDGVIRRLILNSALSNSIFYGPPGCGKSSLGEIISNT 71 Query: 78 LGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAME 130 L NF + A D+ ++ N+E R +LF+DEIHR + ++ L E Sbjct: 72 LDCNFEKLNA-TTASVSDIRTVVETAKRNIELYNKRTILFLDEIHRFNKNQQDALLSYTE 130 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI---- 185 D L TLI ATT NP + + R+ +E Sbjct: 131 DGTL--------------------TLIGATTE-----NPYYNINNALLSRVMVFEFKALT 165 Query: 186 -EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 ED+ ++ +G ++++D+ I ++G RIA L V + + H++ E Sbjct: 166 NEDISKLIDKGLNFLNISMSDKIKEIIIDIAQGDSRIA---LNYVEMYNNI-HSQMTEDE 221 Query: 245 I 245 I Sbjct: 222 I 222 >gi|302561719|ref|ZP_07314061.1| AAA family ATPase [Streptomyces griseoflavus Tu4000] gi|302479337|gb|EFL42430.1| AAA family ATPase [Streptomyces griseoflavus Tu4000] Length = 451 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + + V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLKPGSPLRRLVGEGASGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 87 NKRFVELSA-ITAGVKEVRAVIDGARRASGGYGQETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|294648646|ref|ZP_06726108.1| recombination factor protein RarA [Acinetobacter haemolyticus ATCC 19194] gi|292825436|gb|EFF84177.1| recombination factor protein RarA [Acinetobacter haemolyticus ATCC 19194] Length = 426 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 13 LRPRDLSEIIGQDHLLGDNAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 67 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VIA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 68 DRPFISLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 119 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTL--IAATTRVGLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR +TL + A LL +Q D+F ++ Sbjct: 120 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDAEAIQTLLNKAIQTDKF---LKER 176 Query: 182 FYEIEDLKTIVQRGA 196 F +IE+ ++Q A Sbjct: 177 FIQIEEYDALIQFAA 191 >gi|218781932|ref|YP_002433250.1| ATPase AAA [Desulfatibacillum alkenivorans AK-01] gi|218763316|gb|ACL05782.1| AAA ATPase central domain protein [Desulfatibacillum alkenivorans AK-01] Length = 441 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 40/217 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ + A ++ + L ++F GPPG GKTTLA+++A Sbjct: 16 MRPRTLDEFIGQEAVVGEGGIVRRAVES--DHLFSMIFWGPPGCGKTTLARIMANASQSY 73 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V + + ++ +DR +LF+DEIHR + ++ P +E + Sbjct: 74 FMQISA-VGSGVKQIREVVEEAKDRRNFHAQKSILFVDEIHRFNKAQQDGFLPHVESGII 132 Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 L+ E PS + LSR ++ + PL +D+KT++ Sbjct: 133 TLIGATTENPSFEVISPLLSRCRVV--------VLKPLSS-------------DDMKTVI 171 Query: 193 Q-------RGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 Q +G + +++ +EA +A + G R A Sbjct: 172 QNAVQDEEKGLGMYDVSLEEEALENLAQGADGDARKA 208 >gi|119716631|ref|YP_923596.1| recombination factor protein RarA [Nocardioides sp. JS614] gi|119537292|gb|ABL81909.1| Recombination protein MgsA [Nocardioides sp. JS614] Length = 456 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 14/141 (9%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGP 62 G LS N +RPRTL+E GQ + A S L+ +E ++ + +L GP Sbjct: 18 GSLSANTHASAPLAVRMRPRTLDELVGQAQLRAAGSPLRRLVEGDQSMS-----LLLWGP 72 Query: 63 PGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLA-ALLTNLEDRDVLFIDEIHR 116 PG GKTT+A +V+++ F S + A D A A L VLF+DE+HR Sbjct: 73 PGTGKTTIAAIVSQQTDRRFVEVSAVSAGVKEVRAAIDAARAELAGGGRETVLFVDEVHR 132 Query: 117 LSIIVEEILYPAMEDFQLDLM 137 S ++ L P +E+ + L+ Sbjct: 133 FSKAQQDALLPGVENRWVTLI 153 >gi|303234078|ref|ZP_07320727.1| recombination factor protein RarA [Finegoldia magna BVS033A4] gi|302495003|gb|EFL54760.1| recombination factor protein RarA [Finegoldia magna BVS033A4] Length = 431 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L+++ GQ K+ KA + + ++F GPPG GKTTLA++++ + Sbjct: 22 LRPKSLDKYFGQSHVVGEGKLLNRLIKA--DKIPSMIFYGPPGTGKTTLAEIISNQTNSL 79 Query: 82 FRSTSGPVIAKAGDLAALL----TNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S + D+ ++ TNL + VLFIDEIHR + ++ L +ED + Sbjct: 80 FERLSA-ISNGVKDIREVISTAKTNLSMYNKKTVLFIDEIHRFNKSQQDALLGYVEDGTI 138 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E P K LSR +I Sbjct: 139 TLIGATTENPFFEVNKALLSRCQII 163 >gi|254509759|ref|ZP_05121826.1| ATPase, AAA family [Rhodobacteraceae bacterium KLH11] gi|221533470|gb|EEE36458.1| ATPase, AAA family [Rhodobacteraceae bacterium KLH11] Length = 437 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 18/155 (11%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L + GQ + + L V + + +L ++F GPPG+GKTT+A+++A+E Sbjct: 24 LRPQSLGDVIGQQQVLGPDAPLGVMLASG-----SLSSLIFWGPPGVGKTTIARLLAQET 78 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 79 DLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 138 Query: 134 LDLMVGEGPSARSVKIN---LSRFTLIAATTRVGL 165 + L+VG S ++N LSR + + R+GL Sbjct: 139 I-LLVGATTENPSFELNAAVLSR-SQVLVLERLGL 171 >gi|313107649|ref|ZP_07793832.1| putative ATPase associated with chromosome architecture [Pseudomonas aeruginosa 39016] gi|310880334|gb|EFQ38928.1| putative ATPase associated with chromosome architecture [Pseudomonas aeruginosa 39016] Length = 441 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRPANLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|15597809|ref|NP_251303.1| recombination factor protein RarA [Pseudomonas aeruginosa PAO1] gi|107102135|ref|ZP_01366053.1| hypothetical protein PaerPA_01003185 [Pseudomonas aeruginosa PACS2] gi|218891226|ref|YP_002440092.1| recombination factor protein RarA [Pseudomonas aeruginosa LESB58] gi|254235599|ref|ZP_04928922.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254241046|ref|ZP_04934368.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296388928|ref|ZP_06878403.1| recombination factor protein RarA [Pseudomonas aeruginosa PAb1] gi|9948679|gb|AAG06001.1|AE004690_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126167530|gb|EAZ53041.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126194424|gb|EAZ58487.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218771451|emb|CAW27218.1| putative ATPase associated with chromosome architecture [Pseudomonas aeruginosa LESB58] Length = 441 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRPANLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|218282978|ref|ZP_03489080.1| hypothetical protein EUBIFOR_01666 [Eubacterium biforme DSM 3989] gi|218216172|gb|EEC89710.1| hypothetical protein EUBIFOR_01666 [Eubacterium biforme DSM 3989] Length = 453 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 8/156 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79 +RP TL+E+ GQ + + + + + + + ++F GPPG+GKTTLA+++A + Sbjct: 20 MRPETLDEYVGQKQLVAKGNLLWQMIEH--DQVTSMIFWGPPGVGKTTLARIIAHQTKSY 77 Query: 80 -VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 V+F + + + I + A L + +LF+DEIHR + ++ P +E + + Sbjct: 78 FVDFSAVTSGIKEIKEVMKQADTRRALGQKTILFVDEIHRFNKAQQDAFLPYVEKGSI-I 136 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 ++G S +IN + + L T+ L+D Sbjct: 137 LIGATTENPSFEINSALLSRCRVFVLNSLNTDDLKD 172 >gi|296327395|ref|ZP_06869944.1| AAA family ATPase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155510|gb|EFG96278.1| AAA family ATPase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 407 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 41/230 (17%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L +N + LRP++L++F GQ + V L + +F GPPG Sbjct: 2 NLFQKNYKNVEPLAYKLRPKSLDDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGC 59 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLS 118 GK++L ++++ L NF + A D+ ++ N+E R +LF+DEIHR + Sbjct: 60 GKSSLGEIISNTLDCNFEKLNATT-ASVSDIRNIVETARRNIELYNKRTILFLDEIHRFN 118 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIP 177 ++ L ED L TLI ATT NP + + Sbjct: 119 KNQQDALLSYTEDGTL--------------------TLIGATTE-----NPYYNINNALL 153 Query: 178 IRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 R+ +E ED+ ++ +G + + D+ I S+G RIA Sbjct: 154 SRVMVFEFKALTNEDILKLIDKGLNFLNICMGDKIKEIIVDISQGDSRIA 203 >gi|116050600|ref|YP_790581.1| recombination factor protein RarA [Pseudomonas aeruginosa UCBPP-PA14] gi|115585821|gb|ABJ11836.1| putative ATPase associated with chromosome architecture [Pseudomonas aeruginosa UCBPP-PA14] Length = 441 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRPANLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|294055980|ref|YP_003549638.1| AAA ATPase central domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615313|gb|ADE55468.1| AAA ATPase central domain protein [Coraliomargarita akajimensis DSM 45221] Length = 450 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 15/117 (12%) Query: 22 LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPR+L+E GQ E C ++ RA+ ++F GPPG GKT++A+V+A E Sbjct: 30 MRPRSLDEIIGQKHIVGEDCLLPRLI------RADNFGSLIFYGPPGCGKTSMAEVIAAE 83 Query: 78 LGVNFRSTSGPVIAKAGDLAALL----TNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + V++ +L +L R +LFIDEIHR + +++L P +E Sbjct: 84 TSSKFVRINA-VLSNVAELREILRMARYESAARTILFIDEIHRFNKSQQDLLLPDVE 139 >gi|301062625|ref|ZP_07203257.1| ATPase, AAA family [delta proteobacterium NaphS2] gi|300443305|gb|EFK07438.1| ATPase, AAA family [delta proteobacterium NaphS2] Length = 741 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLEEF GQ + ++ A +A + L V+F GPPG GKTTLA V+A Sbjct: 16 MRPGTLEEFVGQSHIAAPGRLLRRAIQA--DQLSSVIFHGPPGTGKTTLAMVIANTTRSR 73 Query: 82 FRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + V+ DL +++ + R +LF+DEIHR + ++ L P +E+ Sbjct: 74 FIPLNA-VLTGVKDLREAISDARRHREEEDRRTILFVDEIHRWNKSQQDALLPWVEN 129 >gi|224542189|ref|ZP_03682728.1| hypothetical protein CATMIT_01364 [Catenibacterium mitsuokai DSM 15897] gi|224524880|gb|EEF93985.1| hypothetical protein CATMIT_01364 [Catenibacterium mitsuokai DSM 15897] Length = 436 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 16/140 (11%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S LRP L+EF GQ K+ IE +++ ++F GPPG+GKTTLA+++A Sbjct: 15 SRLRPDNLDEFVGQTHLVGKGKILRRLIET-----DSISSMIFWGPPGVGKTTLARIIAS 69 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 +F S V + ++ ++ E+ + +LF+DEIHR + ++ P +E Sbjct: 70 HTHSSFIDFSA-VTSGIKEIREVMKQAENNRVFGEKTILFVDEIHRFNKSQQDAFLPFVE 128 Query: 131 DFQLDLMVGEGPSARSVKIN 150 + +++G S +IN Sbjct: 129 KGSI-ILIGATTENPSFEIN 147 >gi|148272987|ref|YP_001222548.1| recombination factor protein RarA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830917|emb|CAN01861.1| putative ATPase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 473 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 12/133 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAK--ARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPR L+E TGQ + + A A + ++ GPPG GKTTLAQ +A Sbjct: 19 MRPRGLDEVTGQRHLLTPGSPLVSLASDVAGEQGSVSIILWGPPGTGKTTLAQAIAHGSS 78 Query: 80 VNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ ++ L DRD VLF+DEIHR + ++ L P +E+ Sbjct: 79 RRFVELSA-VTAGVRDVRQVMEKALSDRDLFGVSTVLFLDEIHRFTKAQQDALLPGVENG 137 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 138 WVILIAATTENPS 150 >gi|189500549|ref|YP_001960019.1| recombination factor protein RarA [Chlorobium phaeobacteroides BS1] gi|189495990|gb|ACE04538.1| AAA ATPase central domain protein [Chlorobium phaeobacteroides BS1] Length = 445 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 28/170 (16%) Query: 23 RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RPR L++ GQ + A L+ FI A+ R L ++F GPPG GKTTLA++ A L Sbjct: 32 RPRNLDDMYGQEHLIGAEGPLRKFI--AQGR---LPSMIFWGPPGSGKTTLAEICANSLD 86 Query: 80 VNFRSTSGP-----VIAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S S + K+ +LAA L+ R +LFIDEIHR + ++ L A+E Sbjct: 87 FRFDSLSAVDAGVREVRKSLELAASAQRLDGLRTLLFIDEIHRFNKAQQDSLLHAIEQ-G 145 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL----------IAATTRVGLLTNPL 170 + +++G S ++N +SR + + A R L +PL Sbjct: 146 VVVLIGATTENPSFEVNAALMSRMQVYVLNALEDAALQAVVRCALAGDPL 195 >gi|71019167|ref|XP_759814.1| hypothetical protein UM03667.1 [Ustilago maydis 521] gi|46099612|gb|EAK84845.1| hypothetical protein UM03667.1 [Ustilago maydis 521] Length = 566 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 26/160 (16%) Query: 22 LRPRTLEEFTGQVEACSN-LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79 +RP+TL+E+ GQ + + LK+ + K + ++ GPPG GKTTLA+++A+ Sbjct: 32 MRPQTLDEYVGQSDVVNGPLKMLLRQGK-----IPSMILWGPPGTGKTTLARLLAKSASS 86 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-----------------RDVLFIDEIHRLSIIVE 122 + GP + +++A + D R +LFIDEI R + + Sbjct: 87 TDSTCRQGPPPHRFVEISATNSGANDVKKILDEALHRLELTAQRTLLFIDEIQRFNRAQQ 146 Query: 123 EILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLIAAT 160 ++L PA+E Q+ L+ E PS R +SR + T Sbjct: 147 DVLLPAVEKGQIVLVAATTENPSFRLQSALISRMRVFVLT 186 >gi|331697349|ref|YP_004333588.1| AAA ATPase central domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326952038|gb|AEA25735.1| AAA ATPase central domain protein [Pseudonocardia dioxanivorans CB1190] Length = 456 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 22/151 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ + + L+ +E A VL GPPG GKTTLA+++AR Sbjct: 34 MRPRSLDEVVGQRHLLGPGAPLRRLLEGG-----APASVLLYGPPGTGKTTLARLMARSG 88 Query: 79 G--VNFRSTSGPVIAKAGDLAALLTNLE---DRD----VLFIDEIHRLSIIVEEILYPAM 129 G +F + S + A +L A++ + DRD VLFIDE+HR S ++ L A+ Sbjct: 89 GGSRHFVALSA-LSAGVKELRAVIEDARRRLDRDGRSTVLFIDEVHRFSKTQQDALLGAV 147 Query: 130 EDFQLDLMVG---EGPSARSVKINLSRFTLI 157 ED +L L+V E PS V LSR ++ Sbjct: 148 ED-RLVLLVAATTENPSFSVVSPLLSRSLIL 177 >gi|152987484|ref|YP_001347959.1| recombination factor protein RarA [Pseudomonas aeruginosa PA7] gi|150962642|gb|ABR84667.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 441 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRPANLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|90413225|ref|ZP_01221220.1| putative ATPase protein [Photobacterium profundum 3TCK] gi|90325777|gb|EAS42235.1| putative ATPase protein [Photobacterium profundum 3TCK] Length = 446 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 110/273 (40%), Gaps = 54/273 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+EE+ GQ K A +A L ++ GPPG GKTTLA+V A Sbjct: 19 MRPRTVEEYIGQQHILGEGKPLRRALEAGH--LHSMILWGPPGTGKTTLAEVAANYANAE 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ + + R +LF+DE+HR + ++ P +ED Sbjct: 77 VERVSA-VTSGVKDIRIAIDKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIED---- 131 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTI--- 191 T I ATT NP + + R Y+++ L+T+ Sbjct: 132 ----------------GTVTFIGATTE-----NPSFELNNALLSRARVYKLKSLETVEVL 170 Query: 192 ---------VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA--KT 240 RG T L D+ ++ G R++ L ++ D AE A K Sbjct: 171 AVVDQALKDSSRGISDTNLEFVDDVKERLSELVCGDARMSLNYLEQLIDMAEENKAGIKQ 230 Query: 241 ITREIADAALLRLAIDKMG-FDQLDLRYLTMIA 272 IT E+ L +A +K+G FD + MI+ Sbjct: 231 ITLEL----LAEVAGEKIGRFDNKGDLWYDMIS 259 >gi|333028343|ref|ZP_08456407.1| putative recombination factor protein RarA [Streptomyces sp. Tu6071] gi|332748195|gb|EGJ78636.1| putative recombination factor protein RarA [Streptomyces sp. Tu6071] Length = 451 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ A S L+ + V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLGAGSPLRRLVGEGGGGPAGASSVILWGPPGTGKTTLAYVVSKAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ ++ VLF+DEIHR S ++ L PA+E+ Sbjct: 87 NARFVELSA-ITAGVKEVRTVIDGARRASGGYGKDTVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|217979120|ref|YP_002363267.1| AAA ATPase central domain protein [Methylocella silvestris BL2] gi|217504496|gb|ACK51905.1| AAA ATPase central domain protein [Methylocella silvestris BL2] Length = 437 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 17/147 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ + V E A R + +L ++F GPPG GKTT+A+++A E Sbjct: 22 LRPKTLAEVVGQ-----DHLVGPEGALTRRIASGSLGSLIFWGPPGTGKTTVARLLAHET 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 F S + + +L L R +LF+DEIHR + ++ P MED Sbjct: 77 NFAFVQVSA-IFSGVAELKKLFEEARGRRAIGQGTLLFVDEIHRFNRAQQDSFLPVMEDG 135 Query: 133 QLDLM--VGEGPSARSVKINLSRFTLI 157 + L+ E PS LSR +++ Sbjct: 136 AITLIGATTENPSFELNAALLSRASVL 162 >gi|254302702|ref|ZP_04970060.1| RuvB family helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322894|gb|EDK88144.1| RuvB family helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 407 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 49/218 (22%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77 LRP++LE+F GQ K+ + R L + +F GPPG GK++L ++++ Sbjct: 18 LRPKSLEDFVGQE------KLLGKDGVIRRLILNSTLSNSIFYGPPGCGKSSLGEIISNT 71 Query: 78 LGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAME 130 L NF + A D+ ++ N+E R +LF+DEIHR + ++ L E Sbjct: 72 LDCNFEKLNA-TTASVSDIRNVVETARRNIELYNKRTILFLDEIHRFNKNQQDALLSYTE 130 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI---- 185 D L TLI ATT NP + + R+ +E Sbjct: 131 DGTL--------------------TLIGATTE-----NPYYNINNALLSRVMVFEFKALT 165 Query: 186 -EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 +D+ ++ +G ++++D+ I S+G RIA Sbjct: 166 NDDISKLIDKGLNFLNISMSDKIKEIIIDISQGDSRIA 203 >gi|300781083|ref|ZP_07090937.1| AAA family ATPase [Corynebacterium genitalium ATCC 33030] gi|300532790|gb|EFK53851.1| AAA family ATPase [Corynebacterium genitalium ATCC 33030] Length = 448 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ + + EA V+ GPPG GKTT+A ++A +G N Sbjct: 37 MRPRTLDELVGQDHLLGEGRPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIAAAMGQN 94 Query: 82 F---RSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + S V L NL R VLFIDE+HR S ++ L A+E+ + L Sbjct: 95 FVGLSALSSGVKQVREVLDGARRNLARGQRTVLFIDEVHRFSKTQQDALLAAVENRTVLL 154 Query: 137 MVG--EGPS 143 + E PS Sbjct: 155 VAATTENPS 163 >gi|302525831|ref|ZP_07278173.1| recombination factor protein RarA [Streptomyces sp. AA4] gi|302434726|gb|EFL06542.1| recombination factor protein RarA [Streptomyces sp. AA4] Length = 460 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + + L+ +E A A VL GPPG GKTTLA +V+ Sbjct: 40 MRPRTLDEVVGQQHLLREGAPLRRLVEGA-----APASVLLYGPPGTGKTTLANLVSIAT 94 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 G F + S + A ++ ++ R VLFIDE+HR S ++ L A+ED Sbjct: 95 GRRFVAMSA-LSAGVKEVRGVIEEARRRRQYNTENTVLFIDEVHRFSKTQQDALLGAVED 153 Query: 132 FQLDLMVG--EGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 154 RTVLLVAATTENPSFSVVSPLLSR 177 >gi|226953311|ref|ZP_03823775.1| recombination factor protein RarA [Acinetobacter sp. ATCC 27244] gi|226835937|gb|EEH68320.1| recombination factor protein RarA [Acinetobacter sp. ATCC 27244] Length = 425 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGDNAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VIA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFISLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTL--IAATTRVGLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR +TL + A LL +Q D+F ++ Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDAEAIQTLLNKAIQTDKF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 F +IE+ ++Q A Sbjct: 176 FIQIEEYDALIQFAA 190 >gi|114320863|ref|YP_742546.1| recombination factor protein RarA [Alkalilimnicola ehrlichii MLHE-1] gi|114227257|gb|ABI57056.1| Recombination protein MgsA [Alkalilimnicola ehrlichii MLHE-1] Length = 461 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 9/116 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ + E RA ++ GPPG GKTTLA++VA Sbjct: 40 MRPRTLDEFIGQDHILGEGRSLREGI--RAGRPHSMILWGPPGTGKTTLARLVAEAAEAR 97 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+A D+ A + R +LF+DE+HR + ++ P +ED Sbjct: 98 FLTLSA-VMAGVKDIRAAMEEATRVRAAGGRTLLFVDEVHRFNKAQQDAFLPWVED 152 >gi|315605005|ref|ZP_07880059.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 180 str. F0310] gi|315313284|gb|EFU61347.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 180 str. F0310] Length = 457 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 22/171 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + L+ IEA + + ++F GPPG+GKTTLA+V+AR Sbjct: 24 MRPTSLDEVVGQSHQIGPGKALRSMIEADRTPS-----MIFWGPPGVGKTTLARVIARHT 78 Query: 79 GVNF----RSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +F TSG I + A ++ R ++F+DEIHR + ++ P +E Sbjct: 79 HASFIDFSAVTSGIKEIREVMKQADAQASMGSRTIVFVDEIHRFNKAQQDAFLPFVEKGA 138 Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176 + +++G S ++N LSR F L T VGL+ L D G Sbjct: 139 I-ILIGATTENPSFEVNNALLSRCKVFVLNGLTEEDLVGLMRRALTDPRGF 188 >gi|302185003|ref|ZP_07261676.1| recombination factor protein RarA [Pseudomonas syringae pv. syringae 642] Length = 440 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 11/136 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLAKLLAKVSDAH 74 Query: 82 FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V+A ++ + R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL 133 Query: 135 DLMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 -IFIGATTENPSFELN 148 >gi|281208871|gb|EFA83046.1| putative helicase [Polysphondylium pallidum PN500] Length = 758 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 14/132 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L+ F GQ E N +F E K+ A + GPPG GKTT+A++V + + Sbjct: 305 MRPLSLDFFIGQEELL-NGSMFYEMIKSGAPP--SFILWGPPGSGKTTIAKLVEKNTSSH 361 Query: 82 FRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRLSIIVEEILYPAMED-- 131 F S V + D+ ++T L+ + +LFIDEIHR + ++ L P +E+ Sbjct: 362 FVMLSA-VHSGVADMKQVVTQAIARESGLLKQKTILFIDEIHRFTKSQQDFLLPYVENGT 420 Query: 132 FQLDLMVGEGPS 143 F L E PS Sbjct: 421 FTLIGATTENPS 432 >gi|294793998|ref|ZP_06759135.1| ATPase, AAA family [Veillonella sp. 3_1_44] gi|294455568|gb|EFG23940.1| ATPase, AAA family [Veillonella sp. 3_1_44] Length = 433 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 20/149 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR---EL 78 +RP L+ GQ +A F+ A + + +LF GP G GKTTLA ++A+ Sbjct: 20 MRPTKLDHLYGQEKAVGK-GTFLRAM-VEKDTIPSMLFYGPCGTGKTTLAGIIAKVSNSY 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131 VN +T+ A G+L ++ + L+ R +LF+DEIHR + +++L P +ED Sbjct: 78 FVNLNATN----AGIGELRTIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVED 133 Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLI 157 + +++G ++N LSR LI Sbjct: 134 GTI-ILIGATTENPFFEVNRPLLSRLRLI 161 >gi|225620542|ref|YP_002721799.1| Holliday junction resolvase helicase subunit-like ATPase [Brachyspira hyodysenteriae WA1] gi|225215361|gb|ACN84095.1| Holliday junction resolvase helicase subunit-like ATPase [Brachyspira hyodysenteriae WA1] Length = 431 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 121/263 (46%), Gaps = 35/263 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP T+EE GQ ++ L+ I+ K + ++F GPPG+GK+T+A ++A++ Sbjct: 18 MRPLTIEEVFGQHHILDKNKTLRKMIDNDK-----ITSMVFFGPPGVGKSTVASIIAKKT 72 Query: 79 GVNFRSTSGPVIAKAGDLAALL----TNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDF 132 + + V++ ++ + NLE+R +LFIDEIHR + ++ L PA+E+ Sbjct: 73 KSEYIKLNA-VLSNVSEIREAIKKAEKNLENRKKTILFIDEIHRFNKSQQDALLPAVENG 131 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 + +++G S +N + A +R+ L D I + IED Sbjct: 132 SI-ILIG------STTLNPYFYLNNALLSRIMLFEFRNLDDNDIKEAV-LKAIED----- 178 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK---TITREIADAA 249 +RG + V DEA I S G R A L ++ +K TIT EI Sbjct: 179 KRGLGEYDVDVEDEAVNLIVRYSHGDVRKAFTYLEASYLATQIDESKEKLTITEEIVRDV 238 Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272 + +I FD+ D Y T+ A Sbjct: 239 TSKQSI---SFDE-DEHYNTISA 257 >gi|325278997|ref|YP_004251539.1| AAA ATPase central domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324310806|gb|ADY31359.1| AAA ATPase central domain protein [Odoribacter splanchnicus DSM 20712] Length = 423 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ KV IE+ + + GPPG+GKTTLA +VA +L Sbjct: 10 LRPKTLDDYIGQQHLVGKGKVLRKMIESG-----VVSSFILWGPPGVGKTTLAMIVAEQL 64 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F S V + D+ ++ E + +LFIDEIHR S ++ L A+E Sbjct: 65 KRPFYVLSA-VSSGVKDVREVIQKAESQRFFNTPNPILFIDEIHRFSKAQQDSLLAAVEK 123 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 124 GTVTLIGATTENPSFEVISPLLSR 147 >gi|169838823|ref|ZP_02872011.1| Holliday junction DNA helicase B [candidate division TM7 single-cell isolate TM7a] Length = 54 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 38/48 (79%) Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 S+++ L +FTLI ATTR G L+ PL+DRFG+ R+ +Y++E+LK I++ Sbjct: 1 SIRVELPQFTLIGATTRAGQLSTPLRDRFGVTHRMEYYKLEELKEIIR 48 >gi|56459774|ref|YP_155055.1| recombination factor protein RarA [Idiomarina loihiensis L2TR] gi|56178784|gb|AAV81506.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Idiomarina loihiensis L2TR] Length = 446 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 14/119 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT++E+ GQ + L+V +E L ++ GPPG GKTTLA+++A + Sbjct: 19 MRPRTVDEYVGQQHLLAPGKPLRVAVEQGH-----LHSMILWGPPGTGKTTLAELIATQA 73 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I KA + A LL + R +LF+DE+HR + ++ P +ED Sbjct: 74 NATVSRISAVTSGVKDIRKAIEEAKLLAQQQGRRTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|269102237|ref|ZP_06154934.1| putative ATPase protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162135|gb|EEZ40631.1| putative ATPase protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 447 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 93/228 (40%), Gaps = 39/228 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E+ GQ K A +A L ++ GPPG GKTTLA+V A Sbjct: 19 MRPRTVQEYIGQKHILGEGKPLRRALEA--GHLHSMILWGPPGTGKTTLAEVAANYANAE 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ A + D R +LF+DE+HR + ++ P +ED Sbjct: 77 VERVSA-VTSGVKDIRAAIDKARDNKMAGRRTILFVDEVHRFNKSQQDAFLPHIED---- 131 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTIV- 192 T I ATT L N L R + +L E E++ ++ Sbjct: 132 ----------------GTVTFIGATTENPSFELNNALLSRARV-YKLKSLEKEEILEVLD 174 Query: 193 ------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 +RG T L D+ +A G R++ L ++ D AE Sbjct: 175 QALNDKERGVSDTNLNFVDDVKERLADLVCGDARMSLNYLEQLIDMAE 222 >gi|259908928|ref|YP_002649284.1| recombination factor protein RarA [Erwinia pyrifoliae Ep1/96] gi|224964550|emb|CAX56062.1| Putative polynucleotide ATPase protein [Erwinia pyrifoliae Ep1/96] Length = 447 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 11/143 (7%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 SRN Q A + +RPRTL E+ GQ + K A +AR L ++ GPPG GK Sbjct: 8 FSRNEFQPLA--ARMRPRTLAEYIGQQHLLAAGKPLPRAIEARH--LHSMILWGPPGTGK 63 Query: 68 TTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 TTLA+++ R + TSG I +A + A + R +LF+DE+HR + + Sbjct: 64 TTLAEIIGRYGQADVERISAVTSGVKEIREAIERARQNRHAGRRTILFVDEVHRFNKSQQ 123 Query: 123 EILYPAMEDFQLDLM--VGEGPS 143 + P +ED + + E PS Sbjct: 124 DAFLPHIEDGTITFVGATTENPS 146 >gi|77919922|ref|YP_357737.1| recombination factor protein RarA [Pelobacter carbinolicus DSM 2380] gi|77546005|gb|ABA89567.1| Recombination protein MgsA [Pelobacter carbinolicus DSM 2380] Length = 432 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 22/136 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTLEE GQ KV IE+ + L V+F GPPG GKTT+AQV+A Sbjct: 20 MRPRTLEEMVGQQHLIGTDKVLRRLIESDR-----LSSVIFWGPPGTGKTTMAQVIAGST 74 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S ++ KA + A + +LF+DEIHR + ++ P + Sbjct: 75 RSRFVFFSAVLQGIKEVREIVKKAREERAYHNR---KTLLFVDEIHRFNKAQQDAFLPYV 131 Query: 130 EDFQLDLM--VGEGPS 143 E + L+ E PS Sbjct: 132 EKGDITLIGATTENPS 147 >gi|297626347|ref|YP_003688110.1| Uncharacterized ATPase related to the helicase subunit of the holliday junction resolvase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922112|emb|CBL56680.1| Uncharacterized ATPase related to the helicase subunit of the holliday junction resolvase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 474 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 19/134 (14%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR+L+E GQ S L+ E A + V GPPG+GKTT+A VV+R Sbjct: 40 LRPRSLDEIVGQQHLLGPGSPLRRLAEGHAAMS-----VFLWGPPGVGKTTIAAVVSRAT 94 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F S V A D+ L ++ R+ VLF+DE+HR S +++L PA+E+ Sbjct: 95 NRRFVEMSA-VTAGVKDVRREL-DIARRELARGRPTVLFVDEVHRFSKAQQDVLLPAVEN 152 Query: 132 FQLDLMVG--EGPS 143 + L+ E PS Sbjct: 153 RIVTLIAATTENPS 166 >gi|254852138|ref|ZP_05241486.1| recombination factor protein RarA [Listeria monocytogenes FSL R2-503] gi|258605441|gb|EEW18049.1| recombination factor protein RarA [Listeria monocytogenes FSL R2-503] Length = 422 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|256840534|ref|ZP_05546042.1| recombination factor protein RarA [Parabacteroides sp. D13] gi|256737806|gb|EEU51132.1| recombination factor protein RarA [Parabacteroides sp. D13] Length = 423 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 10 LRPKTLDDYIGQKHLVGQGAVLRKMIDAGRVPS-----FILWGPPGVGKTTLAQIIANKL 64 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S + + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 65 DAPFYTLSA-ISSGVKDVREVIEKAKSNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVET 123 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS ++ LSR Sbjct: 124 GVVTLIGATTENPSFEVIRPLLSR 147 >gi|254556460|ref|YP_003062877.1| recombination factor protein RarA [Lactobacillus plantarum JDM1] gi|254045387|gb|ACT62180.1| recombination factor protein RarA [Lactobacillus plantarum JDM1] Length = 449 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 16/189 (8%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M +E L + + S +RP TL +F GQ K+ + + L ++F G Sbjct: 1 MRQESLFNPDKSSSSPLAYRVRPVTLADFKGQEHLLGPGKLLRQLIAE--DQLPSLIFWG 58 Query: 62 PPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHR 116 PPG+GKTTLA+++A++ +F + TSG I + D A + ++ ++FIDEIHR Sbjct: 59 PPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIVFIDEIHR 118 Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTRV--GLLTN 168 + ++ P +E + L +G S +IN LSR L A T +L Sbjct: 119 FNKAQQDAFLPYVERGSITL-IGATTENPSFEINAALLSRCKVLVLKALTPNALEAVLQG 177 Query: 169 PLQDRFGIP 177 LQ+ G P Sbjct: 178 ALQNPKGFP 186 >gi|237740164|ref|ZP_04570645.1| ATPase [Fusobacterium sp. 2_1_31] gi|229422181|gb|EEO37228.1| ATPase [Fusobacterium sp. 2_1_31] Length = 407 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 49/218 (22%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77 LRP+ L++F GQ K+ + R AL + +F GPPG GK++L ++++ Sbjct: 18 LRPKNLDDFVGQE------KLLGKDGVIRRLILNSALSNSIFYGPPGCGKSSLGEIISNT 71 Query: 78 LGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAME 130 L NF + A D+ ++ N+E R +LF+DEIHR + ++ L E Sbjct: 72 LDCNFEKLNATT-ASVSDIRTVVETAKRNIELYNKRTILFLDEIHRFNKNQQDALLSYTE 130 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI---- 185 D L TLI ATT NP + + R+ +E Sbjct: 131 DGTL--------------------TLIGATTE-----NPYYNINNALLSRVMVFEFKALT 165 Query: 186 -EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 ED+ ++ +G K ++++ + I ++G RIA Sbjct: 166 NEDISKLIDKGLKFLNISMSGKIKEIIIDIAQGDSRIA 203 >gi|331017252|gb|EGH97308.1| recombination factor protein RarA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 440 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|294811570|ref|ZP_06770213.1| recombination factor protein RarA [Streptomyces clavuligerus ATCC 27064] gi|326440045|ref|ZP_08214779.1| recombination factor protein RarA [Streptomyces clavuligerus ATCC 27064] gi|294324169|gb|EFG05812.1| recombination factor protein RarA [Streptomyces clavuligerus ATCC 27064] Length = 454 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + V+ GPPG+GKTTLA VV+ Sbjct: 27 MRPRTLDEVVGQRHLLKPGSPLRRLVGEGPGGPAGASSVILWGPPGIGKTTLAYVVSAAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 87 DKRFVELSA-ITAGVKEVRAVIDGARRAAGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|281422083|ref|ZP_06253082.1| replication-associated recombination protein A [Prevotella copri DSM 18205] gi|281403872|gb|EFB34552.1| replication-associated recombination protein A [Prevotella copri DSM 18205] Length = 424 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL ++ GQ V + L+ I+A + + + GPPG+GKTTLAQ+VA+ + Sbjct: 9 MRPHTLADYVGQQHLVGEGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIVAQTI 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 V F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 KVPFFTLSA-VTSGVKDVREVIERAKSGRFFNSASPILFIDEIHRFSKSQQDSLLGAVEK 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GIVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|28870511|ref|NP_793130.1| ATPase, AAA family [Pseudomonas syringae pv. tomato str. DC3000] gi|28853759|gb|AAO56825.1| ATPase, AAA family [Pseudomonas syringae pv. tomato str. DC3000] Length = 440 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|66046406|ref|YP_236247.1| recombination factor protein RarA [Pseudomonas syringae pv. syringae B728a] gi|63257113|gb|AAY38209.1| AAA ATPase, central region [Pseudomonas syringae pv. syringae B728a] gi|330972888|gb|EGH72954.1| recombination factor protein RarA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 440 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 11/136 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLAKLLAKVSDAH 74 Query: 82 FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V+A ++ + R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL 133 Query: 135 DLMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 -IFIGATTENPSFELN 148 >gi|328474875|gb|EGF45675.1| recombination factor protein RarA [Listeria monocytogenes 220] Length = 428 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|302541110|ref|ZP_07293452.1| AAA family ATPase [Streptomyces hygroscopicus ATCC 53653] gi|302458728|gb|EFL21821.1| AAA family ATPase [Streptomyces himastatinicus ATCC 53653] Length = 455 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ + VL GPPG+GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLRPGSPLRRLVGEGSGGPAGPSSVLLWGPPGIGKTTLAYVVSQAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 87 QKRFVELSA-ITAGVKEVRAVIDGARRSSGAYGRETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|313899860|ref|ZP_07833363.1| recombination factor protein RarA [Clostridium sp. HGF2] gi|312955475|gb|EFR37140.1| recombination factor protein RarA [Clostridium sp. HGF2] Length = 421 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 45/237 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L++ GQ KV + L ++F GPPG GKTTLA V+A EL + Sbjct: 9 MRPQHLDDIIGQQHLIGEGKVLRRCVLEKR--LFSMIFYGPPGTGKTTLAMVLANELELP 66 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V DL + + + ++ IDE+HRL+ +++L P +E+ Sbjct: 67 FRMFNA-VTGNKKDLETIFQEAKFYEGLIVIIDEVHRLNKDKQDLLLPHVEN-------- 117 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEIED----------L 188 TLI ATT +NPL I R + +EI+ + Sbjct: 118 ------------GNITLIGATT-----SNPLHAINPAIRSRCHLFEIKQAQQEDIEQALM 160 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 K I + + + +EA IA S G R + +L + +A IT+E+ Sbjct: 161 KAIHHQDGLNDSVQIEEEALHIIARHSNGDIRYSLNIL----EICALASDGVITQEL 213 >gi|194336934|ref|YP_002018728.1| AAA ATPase central domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309411|gb|ACF44111.1| AAA ATPase central domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 447 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL++ GQ V A L+ F+ + + ++F GPPG GKTTLA++ A L Sbjct: 31 VRPHTLDDMAGQEHLVGANGPLRKFLSGGQ-----MPSMIFWGPPGSGKTTLAEICATSL 85 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +F S + KA + A R +LFIDEIHR + ++ L A+E Sbjct: 86 NYSFEQLSAIDSGVKEVRKALEQAEKSRRSGRRTILFIDEIHRFNKAQQDTLLHAIEQ-G 144 Query: 134 LDLMVGEGPSARSVKIN 150 L +++G S ++N Sbjct: 145 LIVLIGATTENPSFEVN 161 >gi|198282689|ref|YP_002219010.1| AAA ATPase central domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667409|ref|YP_002424881.1| ATPase, AAA family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247210|gb|ACH82803.1| AAA ATPase central domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519622|gb|ACK80208.1| ATPase, AAA family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 442 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL+ + GQ L+ ++A L ++ GPPG GKTTLAQ++A Sbjct: 15 MRPQTLDAYAGQRHLLGKEGPLQAMVQAGH-----LHSMILWGPPGSGKTTLAQLLAHTA 69 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 G +F+ S I A A +L VLFIDEIHR + ++ L P +E+ Sbjct: 70 GRHFQILSAVNSGVREIRAAVSSAEAAQSLGQGTVLFIDEIHRFNKSQQDALLPYVEEGV 129 Query: 134 LDLM--VGEGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 130 VTLIGATTENPSFALVNALLSR 151 >gi|331010747|gb|EGH90803.1| recombination factor protein RarA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 440 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|299143961|ref|ZP_07037041.1| ATPase, AAA family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518446|gb|EFI42185.1| ATPase, AAA family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 434 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L EF GQ + K+ + + ++F GPPG+GKTTLA+++A Sbjct: 22 LRPKNLNEFFGQKHLVGEGRYLSRIIKS--DRVSSMIFYGPPGVGKTTLARIIANTTKKR 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F S V + +L +L E+ +LFIDEIHR + ++ L P +E Sbjct: 80 FVQISA-VTSNIKELREVLNEAEEFLKYENKNTILFIDEIHRFNKTQQDALLPFVE 134 >gi|297571411|ref|YP_003697185.1| ATPase AAA [Arcanobacterium haemolyticum DSM 20595] gi|296931758|gb|ADH92566.1| AAA ATPase central domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 442 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 19/136 (13%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L + GQ L+ IE + A + V+ GPPG+GKTTLA ++A Sbjct: 23 MRPTSLSDVVGQTHLLGPGQPLRQLIEPSHAGVPS--SVILWGPPGIGKTTLAYLIAGTS 80 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 G NF S IA+A D A+ VLF+DE+HR S ++ L PA+ Sbjct: 81 GRNFAEISAVSSGVAQLRESIARAKDELAITGK---ETVLFVDEVHRFSKAQQDALLPAV 137 Query: 130 EDFQLDLMVG--EGPS 143 E+ + L+ E PS Sbjct: 138 ENGWVILVAATTENPS 153 >gi|288939849|ref|YP_003442089.1| AAA ATPase central domain-containing protein [Allochromatium vinosum DSM 180] gi|288895221|gb|ADC61057.1| AAA ATPase central domain protein [Allochromatium vinosum DSM 180] Length = 435 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L+E GQ L++ ++ +A + ++ GPPG+GKTTLA++ A+ Sbjct: 17 LRPRVLDEVIGQSHLLGEGKPLRLAFQSGQAHS-----MILWGPPGVGKTTLARLTAQAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S V A D+ A + E R +LF+DEIHR + ++ L P +E Sbjct: 72 AGEFIALSA-VFAGVKDIRAAMEQAEHHRSRGRRTILFVDEIHRFNKAQQDALLPYVESG 130 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS LSR Sbjct: 131 LVTLIGATTENPSFEVNAALLSR 153 >gi|150007159|ref|YP_001301902.1| recombination factor protein RarA [Parabacteroides distasonis ATCC 8503] gi|149935583|gb|ABR42280.1| putative AAA family ATPase protein [Parabacteroides distasonis ATCC 8503] Length = 422 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 9 LRPKTLDDYIGQKHLVGQGAVLRKMIDAGRVPS-----FILWGPPGVGKTTLAQIIANKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S + + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 DAPFYTLSA-ISSGVKDVREVIEKAKSNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVET 122 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS ++ LSR Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSR 146 >gi|330875796|gb|EGH09945.1| recombination factor protein RarA [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 440 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|289625405|ref|ZP_06458359.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649312|ref|ZP_06480655.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi str. 2250] gi|298487530|ref|ZP_07005572.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157914|gb|EFH98992.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323768|gb|EFW79852.1| recombination factor protein RarA [Pseudomonas syringae pv. glycinea str. B076] gi|320327909|gb|EFW83914.1| recombination factor protein RarA [Pseudomonas syringae pv. glycinea str. race 4] gi|330866858|gb|EGH01567.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889679|gb|EGH22340.1| recombination factor protein RarA [Pseudomonas syringae pv. mori str. 301020] gi|330987921|gb|EGH86024.1| recombination factor protein RarA [Pseudomonas syringae pv. lachrymans str. M301315] Length = 440 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|270340043|ref|ZP_06006828.2| replication-associated recombination protein A [Prevotella bergensis DSM 17361] gi|270332946|gb|EFA43732.1| replication-associated recombination protein A [Prevotella bergensis DSM 17361] Length = 424 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ L+ +E+ + + + GPPG+GKTTLAQ++A L Sbjct: 9 LRPQTLDDYIGQEHVVGKDAVLRKMVESGR-----ISSFILWGPPGVGKTTLAQIIAGML 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 V F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 KVPFFTLSA-VTSGVKDVREVIERAKQGRFFNSGSPILFIDEIHRFSKSQQDSLLGAVER 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|213970053|ref|ZP_03398185.1| ATPase, AAA family [Pseudomonas syringae pv. tomato T1] gi|301381409|ref|ZP_07229827.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato Max13] gi|302058407|ref|ZP_07249948.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato K40] gi|302130344|ref|ZP_07256334.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925157|gb|EEB58720.1| ATPase, AAA family [Pseudomonas syringae pv. tomato T1] Length = 440 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|99080129|ref|YP_612283.1| recombination factor protein RarA [Ruegeria sp. TM1040] gi|99036409|gb|ABF63021.1| Recombination protein MgsA [Ruegeria sp. TM1040] Length = 443 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL E GQ + A + L V + + + ++F GPPG+GKTT+A+++A+E Sbjct: 30 LRPRTLAEVIGQDQVLGAEAPLGVMLSSGSLSS-----LIFWGPPGVGKTTIARLLAQET 84 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 85 DLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 144 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 145 I-LLVGATTENPSFELN 160 >gi|301311175|ref|ZP_07217103.1| ATPase, AAA family [Bacteroides sp. 20_3] gi|300830749|gb|EFK61391.1| ATPase, AAA family [Bacteroides sp. 20_3] Length = 422 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 9 LRPKTLDDYIGQKHLVGQGAVLRKMIDAGRVPS-----FILWGPPGVGKTTLAQIIANKL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S + + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 DAPFYTLSA-ISSGVKDVREVIEKAKSNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVET 122 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS ++ LSR Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSR 146 >gi|71733913|ref|YP_275261.1| recombination factor protein RarA [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554466|gb|AAZ33677.1| ATPase, AAA family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 440 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|19703642|ref|NP_603204.1| recombination factor protein RarA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713756|gb|AAL94503.1| ATPase associated with chromosome architecture/replication [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 407 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 41/230 (17%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L +N + LRP++L++F GQ + V L + +F GPPG Sbjct: 2 NLFQKNYKNVEPLAYKLRPKSLDDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGC 59 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLS 118 GK++L ++++ L NF + A D+ ++ N+E R +LF+DEIHR + Sbjct: 60 GKSSLGEIISNTLDCNFEKLNATT-ASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIP 177 ++ L ED L TLI ATT NP + + Sbjct: 119 KNQQDALLSYTEDGTL--------------------TLIGATTE-----NPYYNINNALL 153 Query: 178 IRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 R+ +E ED+ ++ +G + + D+ I S+G RIA Sbjct: 154 SRVMVFEFKALTNEDILKLIDKGLNFLNICMGDKIKEIIVDISQGDSRIA 203 >gi|315282425|ref|ZP_07870842.1| recombination factor protein RarA [Listeria marthii FSL S4-120] gi|313613930|gb|EFR87657.1| recombination factor protein RarA [Listeria marthii FSL S4-120] Length = 427 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|297195510|ref|ZP_06912908.1| recombination factor protein RarA [Streptomyces pristinaespiralis ATCC 25486] gi|197722126|gb|EDY66034.1| recombination factor protein RarA [Streptomyces pristinaespiralis ATCC 25486] Length = 453 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 13/129 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFI-EAAKARAEA-LDHVLFVGPPGLGKTTLAQVVAR 76 +RPRTL+E GQ ++ S L+ + E A A + V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQRHLLKPGSPLRRLVGEGANGGGPAGVSSVILWGPPGTGKTTLAYVVSK 86 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129 F S + A ++ A++ + VLF+DEIHR S ++ L PA+ Sbjct: 87 ATNKRFVELSA-ITAGVKEVRAVIEGAKRAAGGFGKETVLFLDEIHRFSKAQQDSLLPAV 145 Query: 130 EDFQLDLMV 138 E+ + L+ Sbjct: 146 ENRWVTLIA 154 >gi|149179070|ref|ZP_01857643.1| hypothetical protein PM8797T_19475 [Planctomyces maris DSM 8797] gi|148842110|gb|EDL56500.1| hypothetical protein PM8797T_19475 [Planctomyces maris DSM 8797] Length = 445 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 14/118 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+LEEF GQ K+ A + + ++F G PG GKT+LA+++AR+ Sbjct: 22 MRPRSLEEFVGQSHFLGEGKLLRRILAA--DRIGSLIFYGSPGTGKTSLAELIARQSNRR 79 Query: 82 FRSTSGPVIAKAG--DLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F + + A AG ++ A L D + +LFIDE+H S + +++L P +E Sbjct: 80 FEALNA---ASAGIKEVRAALDRARDELATGGKQTILFIDELHHFSKVQQDVLLPDVE 134 >gi|116872943|ref|YP_849724.1| recombination factor protein RarA [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741821|emb|CAK20945.1| ATPase, AAA domain family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 427 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|114047507|ref|YP_738057.1| recombination factor protein RarA [Shewanella sp. MR-7] gi|113888949|gb|ABI43000.1| Recombination protein MgsA [Shewanella sp. MR-7] Length = 443 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 35/262 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT+ E+ GQ L+ +EA +A + ++ GPPG GKTTLA+++A Sbjct: 19 MRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + D+ A + + R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VTSGVKDIRAAIEQAQAVAQSRRQRTLLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + + +G S +IN + + RV L+ QD + I T Sbjct: 133 GTV-IFIGATTENPSFEIN----NALLSRARVYLIKRLSQDEI-------VHIITQALTD 180 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 +RG L + + ++A G R A LL + D VA + T E+ L+ Sbjct: 181 AERGLGQRQLIMPTDVLNKLAQLCDGDARKALNLLELMSDM--VADGGSFTTEM----LV 234 Query: 252 RLAIDKM-GFDQLDLRYLTMIA 272 ++A ++ GFD+ ++ +I+ Sbjct: 235 QVAGHQVAGFDKNGDQFYDLIS 256 >gi|313623688|gb|EFR93840.1| recombination factor protein RarA [Listeria innocua FSL J1-023] Length = 427 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|16800617|ref|NP_470885.1| recombination factor protein RarA [Listeria innocua Clip11262] gi|16414036|emb|CAC96780.1| lin1549 [Listeria innocua Clip11262] Length = 427 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|333030271|ref|ZP_08458332.1| AAA ATPase central domain protein [Bacteroides coprosuis DSM 18011] gi|332740868|gb|EGJ71350.1| AAA ATPase central domain protein [Bacteroides coprosuis DSM 18011] Length = 423 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L+ + GQ V + L+ IE + + + GPPG+GKTTLA++++ +L Sbjct: 8 LRPTSLDNYIGQQHLVGPNAPLRKMIEGGR-----ISSFILWGPPGVGKTTLAKIISHQL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 V F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 DVPFYTLSA-VTSGVKDVREIIQKAKSNRFFNQASPILFIDEIHRFSKSQQDSLLGAVEQ 121 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 122 GVVTLIGATTENPSFEVIRPLLSRSQL 148 >gi|255015227|ref|ZP_05287353.1| recombination factor protein RarA [Bacteroides sp. 2_1_7] gi|262381155|ref|ZP_06074293.1| recombination factor protein RarA [Bacteroides sp. 2_1_33B] gi|298377584|ref|ZP_06987536.1| ATPase, AAA family [Bacteroides sp. 3_1_19] gi|262296332|gb|EEY84262.1| recombination factor protein RarA [Bacteroides sp. 2_1_33B] gi|298265603|gb|EFI07264.1| ATPase, AAA family [Bacteroides sp. 3_1_19] Length = 423 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 10 LRPKTLDDYIGQKHLVGQGAVLRKMIDAGRVPS-----FILWGPPGVGKTTLAQIIANKL 64 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S + + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 65 DAPFYTLSA-ISSGVKDVREVIEKAKSNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVET 123 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS ++ LSR Sbjct: 124 GVVTLIGATTENPSFEVIRPLLSR 147 >gi|313893197|ref|ZP_07826774.1| ATPase, AAA family [Veillonella sp. oral taxon 158 str. F0412] gi|313442550|gb|EFR60965.1| ATPase, AAA family [Veillonella sp. oral taxon 158 str. F0412] Length = 433 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 14/146 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+ GQ +A F+ A + + +LF GP G GKTTLA ++A+ + Sbjct: 20 MRPTKLDHLYGQEKAVGK-GTFLRAM-VEKDTIPSMLFYGPCGTGKTTLAGIIAKMSNSH 77 Query: 82 FRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + + A G+L ++ + L+ R +LF+DEIHR + +++L P +ED + Sbjct: 78 FVNLNA-TNAGIGELRTIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVEDGTI 136 Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157 +++G ++N LSR LI Sbjct: 137 -ILIGATTENPFFEVNRPLLSRLRLI 161 >gi|118617371|ref|YP_905703.1| recombination factor protein RarA [Mycobacterium ulcerans Agy99] gi|118569481|gb|ABL04232.1| conserved alanine, valine and leucine rich protein [Mycobacterium ulcerans Agy99] Length = 452 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 38/187 (20%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + + L+ +E + + V+ GPPG GKTTLA +++ Sbjct: 35 MRPESLDEVVGQGHLLAPGAPLRRLVEGS-----GVASVILYGPPGSGKTTLAALISHAT 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A D+ A++ ++ VLFIDE+HR S ++ L A+E+ Sbjct: 90 GRRFEALSA-LSAGVKDVRAVIETARQVLRRGEQTVLFIDEVHRFSKTQQDALLSAVENR 148 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + L+ E PS F+++A PL R I ++L+ ED++ Sbjct: 149 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLHPLGAEDIRA 187 Query: 191 IVQRGAK 197 +VQR A+ Sbjct: 188 VVQRAAQ 194 >gi|313608683|gb|EFR84519.1| recombination factor protein RarA [Listeria monocytogenes FSL F2-208] Length = 427 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|255731133|ref|XP_002550491.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240132448|gb|EER32006.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 698 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL++F GQ + L+ I++ + + L G PG+GKT+LA+++A+ Sbjct: 166 LRPKTLDDFFGQEKLLGKDGALRNMIQS-----DIIPSFLLWGVPGIGKTSLARIIAKNS 220 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F SG + + A +L + E+ R +LF+DEIHR + V+++L P +E Sbjct: 221 RCKFVELSG-IDSNAKNLKEVFLQAENHKKLTGQRTILFLDEIHRFNKAVQDLLLPVIE 278 >gi|226224115|ref|YP_002758222.1| hypothetical protein Lm4b_01524 [Listeria monocytogenes Clip81459] gi|225876577|emb|CAS05286.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 427 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|217967181|ref|YP_002352687.1| ATPase AAA [Dictyoglomus turgidum DSM 6724] gi|217336280|gb|ACK42073.1| AAA ATPase central domain protein [Dictyoglomus turgidum DSM 6724] Length = 431 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 8/135 (5%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 MD++ L + + + +RPRTLEEF G E K F+ A + L ++ G Sbjct: 1 MDKQERLFKEDNSYEPLSFRMRPRTLEEFLG-AEDIIGEKSFLRKAINKG-YLPSLIIYG 58 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT---NLE---DRDVLFIDEIH 115 PPG GKTTL+ ++A+ + F + ++ AL NLE R VLF+DEIH Sbjct: 59 PPGSGKTTLSVLLAKAINAEFIELNAAIVGVQELKEALQKAKRNLELYNKRTVLFLDEIH 118 Query: 116 RLSIIVEEILYPAME 130 + + +++L P +E Sbjct: 119 HFNKLQQDVLLPFVE 133 >gi|116624471|ref|YP_826627.1| recombination factor protein RarA [Candidatus Solibacter usitatus Ellin6076] gi|116227633|gb|ABJ86342.1| Recombination protein MgsA [Candidatus Solibacter usitatus Ellin6076] Length = 434 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 32/209 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L+E+ GQ K + + L ++ GPPG+GKTTLA ++A+ Sbjct: 22 MRPTSLDEYIGQDHILGPGKPL--RRQIERDELTSIILWGPPGVGKTTLAHLIAKVTKCE 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME--DFQ 133 F S V++ ++ A++ + E R +LF+DEIHR + ++ P +E D Sbjct: 80 FIPFSA-VLSGMKEIKAVMVDAEKLRRLGRRTILFVDEIHRFNKAQQDAFLPYVERGDII 138 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L E PS + LSR + A L + + ++ T+++ Sbjct: 139 LIGATTENPSFEVIAALLSRSRVYA---------------------LRAFTVPEIVTMLK 177 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 R + L +D+ +I + S G R A Sbjct: 178 RALPVLHLQASDDLLEQIGIYSNGDGRQA 206 >gi|152978774|ref|YP_001344403.1| recombination factor protein RarA [Actinobacillus succinogenes 130Z] gi|150840497|gb|ABR74468.1| AAA ATPase central domain protein [Actinobacillus succinogenes 130Z] Length = 447 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 18/155 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E+ GQ + L+ IE+ A + ++ GPPG GKTTLA+++A + Sbjct: 20 MRPRTLDEYCGQQHLIGQGKPLRRAIESGHAHS-----MILWGPPGTGKTTLAEIIAYRI 74 Query: 79 GVNFRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG + A L DR +LF+DE+HR + ++ P +ED Sbjct: 75 NAEVERLSAVTSGVKDIREAIERAKRNRLADRQTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 + + +G S ++N + + TRV +L + Sbjct: 135 I-IFIGATTENPSFELN----NALLSRTRVYILKS 164 >gi|330958181|gb|EGH58441.1| recombination factor protein RarA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 440 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|254994482|ref|ZP_05276672.1| recombination factor protein RarA [Listeria monocytogenes FSL J2-064] Length = 227 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|325282636|ref|YP_004255177.1| AAA ATPase central domain-containing protein [Deinococcus proteolyticus MRP] gi|324314445|gb|ADY25560.1| AAA ATPase central domain protein [Deinococcus proteolyticus MRP] Length = 429 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 64/130 (49%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRT+ E GQ K + L ++ GPPG+GKTTLA++VA E+G + Sbjct: 14 LRPRTVAEVVGQTHLLGPGKPLTRLLNS--GRLPSLILWGPPGVGKTTLARLVAGEVGSH 71 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V A D+ + E R VLF+DEIHR + ++ L P +E L Sbjct: 72 FIGLSA-VSAGVKDVREAVLEAEARRGRGQKTVLFLDEIHRFNKAQQDALLPHVESGLLT 130 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 131 LIGATTENPS 140 >gi|182439821|ref|YP_001827540.1| recombination factor protein RarA [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468337|dbj|BAG22857.1| putative ATP/GTP-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 459 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L+E GQ ++ S L+ + V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRVLDEVVGQQHLLKPGSPLRRLVGEGGGGPAGASSVILWGPPGTGKTTLAYVVSKAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ + VLF+DEIHR S ++ L PA+E+ Sbjct: 87 NKRFVELSA-ITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|90021340|ref|YP_527167.1| recombination factor protein RarA [Saccharophagus degradans 2-40] gi|89950940|gb|ABD80955.1| Recombination protein MgsA / PAS/PAC sensor signal transduction histidine kinase [Saccharophagus degradans 2-40] Length = 444 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 11/136 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E+ GQ K + A R + +L+ GPPG+GKT+LA+++A E+ + Sbjct: 20 MRPRTLKEYMGQTHLLGKGKP-LRLALERGQIHSMILW-GPPGVGKTSLARLLANEIQGH 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V++ ++ A + E + VLF+DE+HR + ++ P +ED + Sbjct: 78 FIAISA-VLSGVKEIRAAVAEAEQQRNMYGRTTVLFVDEVHRFNKSQQDAFLPYVEDGTV 136 Query: 135 DLMVGEGPSARSVKIN 150 + VG S ++N Sbjct: 137 -VFVGATTENPSFEVN 151 >gi|46907742|ref|YP_014131.1| recombination factor protein RarA [Listeria monocytogenes serotype 4b str. F2365] gi|47094362|ref|ZP_00232057.1| ATPase, AAA family domain protein [Listeria monocytogenes str. 4b H7858] gi|46881011|gb|AAT04308.1| ATPase, AAA family domain protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017260|gb|EAL08098.1| ATPase, AAA family domain protein [Listeria monocytogenes str. 4b H7858] gi|328465552|gb|EGF36781.1| recombination factor protein RarA [Listeria monocytogenes 1816] Length = 427 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|240170720|ref|ZP_04749379.1| recombination factor protein RarA [Mycobacterium kansasii ATCC 12478] Length = 446 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + A S L+ +E + + V+ GPPG GKTTLA +V++ Sbjct: 31 MRPASLDEVVGQDHLLAAGSPLRRLVEGS-----GVASVILYGPPGSGKTTLAALVSQAT 85 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A D+ A++ ++ VLFIDE+HR S ++ L A+E+ Sbjct: 86 GRRFEALSA-LSAGVKDVRAVIEGARRGLLAGEQTVLFIDEVHRFSKTQQDALLSAVENR 144 Query: 133 QLDLMVG--EGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 145 VVLLVAATTENPSFAVVAPLLSR 167 >gi|227505015|ref|ZP_03935064.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum ATCC 6940] gi|227198379|gb|EEI78427.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum ATCC 6940] Length = 416 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP++L+E GQ +E L+ IE + EA V+ GPPG GKTT+A ++A+ + Sbjct: 1 MRPQSLDEVLGQGHLLEKGKPLRRLIEGS---GEA--SVILYGPPGTGKTTIASLIAKAI 55 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 G NF S + + + ++T+ R VLFIDE+HR S ++ L A+E+ Sbjct: 56 GQNFVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVENR 114 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 115 TVLLVAATTENPS 127 >gi|152966979|ref|YP_001362763.1| recombination factor protein RarA [Kineococcus radiotolerans SRS30216] gi|151361496|gb|ABS04499.1| AAA ATPase central domain protein [Kineococcus radiotolerans SRS30216] Length = 456 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 11/120 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ ++ S L+ V+ GPPG GKTTLA V+AR Sbjct: 25 MRPRSLDEVVGQQHLLQPGSPLRRLAADGDLGRAGPASVILWGPPGTGKTTLASVLARSG 84 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-EDRD------VLFIDEIHRLSIIVEEILYPAMED 131 G F S V A D+ ++ +DRD VLF+DEIHR + ++ L P +E+ Sbjct: 85 GRKFAELSA-VTAGVKDVRRVVEAARDDRDLYRRQTVLFLDEIHRFTKAQQDALLPGVEN 143 >gi|47097211|ref|ZP_00234775.1| ATPase, AAA family domain protein [Listeria monocytogenes str. 1/2a F6854] gi|224499826|ref|ZP_03668175.1| recombination factor protein RarA [Listeria monocytogenes Finland 1988] gi|254898320|ref|ZP_05258244.1| recombination factor protein RarA [Listeria monocytogenes J0161] gi|254912188|ref|ZP_05262200.1| ATPase [Listeria monocytogenes J2818] gi|254936516|ref|ZP_05268213.1| ATPase [Listeria monocytogenes F6900] gi|284801904|ref|YP_003413769.1| recombination factor protein RarA [Listeria monocytogenes 08-5578] gi|284995046|ref|YP_003416814.1| recombination factor protein RarA [Listeria monocytogenes 08-5923] gi|47014425|gb|EAL05394.1| ATPase, AAA family domain protein [Listeria monocytogenes str. 1/2a F6854] gi|258609110|gb|EEW21718.1| ATPase [Listeria monocytogenes F6900] gi|284057466|gb|ADB68407.1| recombination factor protein RarA [Listeria monocytogenes 08-5578] gi|284060513|gb|ADB71452.1| recombination factor protein RarA [Listeria monocytogenes 08-5923] gi|293590161|gb|EFF98495.1| ATPase [Listeria monocytogenes J2818] Length = 427 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|330965615|gb|EGH65875.1| recombination factor protein RarA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 440 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|290893873|ref|ZP_06556851.1| recombination factor protein RarA [Listeria monocytogenes FSL J2-071] gi|290556590|gb|EFD90126.1| recombination factor protein RarA [Listeria monocytogenes FSL J2-071] Length = 427 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|254824427|ref|ZP_05229428.1| recombination factor protein RarA [Listeria monocytogenes FSL J1-194] gi|293593663|gb|EFG01424.1| recombination factor protein RarA [Listeria monocytogenes FSL J1-194] Length = 427 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|227496429|ref|ZP_03926715.1| recombination factor protein RarA [Actinomyces urogenitalis DSM 15434] gi|226834048|gb|EEH66431.1| recombination factor protein RarA [Actinomyces urogenitalis DSM 15434] Length = 455 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 17/147 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR+L E GQ + + L +EA + L ++ GPPG GKTT+A+++A Sbjct: 29 LRPRSLAEVVGQDHLLAPEAPLGRMVEAGR-----LSSIILWGPPGCGKTTIARLLASGT 83 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 G+ F S + K AA + R +LF+DEIHR + ++ P +ED Sbjct: 84 GLVFEQVSATFSGVAELRKVFSAAAQRRQIGQRTLLFVDEIHRFNRAQQDSFLPYVEDGT 143 Query: 134 LDLMVGEGPSARSVKIN---LSRFTLI 157 + ++VG S ++N LSR ++ Sbjct: 144 V-VLVGATTENPSFELNGALLSRCQVL 169 >gi|217964339|ref|YP_002350017.1| ATPase, AAA family domain protein [Listeria monocytogenes HCC23] gi|217333609|gb|ACK39403.1| ATPase, AAA family domain protein [Listeria monocytogenes HCC23] gi|307571095|emb|CAR84274.1| ATPase family protein [Listeria monocytogenes L99] Length = 427 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|330955484|gb|EGH55744.1| recombination factor protein RarA [Pseudomonas syringae Cit 7] Length = 207 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLAKLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLA-ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|326780485|ref|ZP_08239750.1| AAA ATPase central domain protein [Streptomyces cf. griseus XylebKG-1] gi|326660818|gb|EGE45664.1| AAA ATPase central domain protein [Streptomyces cf. griseus XylebKG-1] Length = 471 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L+E GQ ++ S L+ + V+ GPPG GKTTLA VV++ Sbjct: 42 MRPRVLDEVVGQQHLLKPGSPLRRLVGKGGGGPAGASSVILWGPPGTGKTTLAYVVSKAT 101 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ + VLF+DEIHR S ++ L PA+E+ Sbjct: 102 NKRFVELSA-ITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 160 Query: 132 FQLDLMV 138 + L+ Sbjct: 161 RWVTLIA 167 >gi|304391485|ref|ZP_07373427.1| replication-associated recombination protein A [Ahrensia sp. R2A130] gi|303295714|gb|EFL90072.1| replication-associated recombination protein A [Ahrensia sp. R2A130] Length = 440 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E GQ + L+ +EA +L ++F GPPG GKTT+A+++A E Sbjct: 26 LRPKTLDEVVGQDHLLGENGALRRMLEAP-----SLGSMVFWGPPGSGKTTVARLLADEG 80 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +F S + DL + R +LF+DEIHR + ++ P MED Sbjct: 81 EHHFEQISA-IFTGVADLKKVFEQARIRAGNGRRTLLFVDEIHRFNRAQQDSFLPVMEDG 139 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS LSR Sbjct: 140 TITLIGATTENPSFELNAAVLSR 162 >gi|330881213|gb|EGH15362.1| recombination factor protein RarA [Pseudomonas syringae pv. glycinea str. race 4] Length = 195 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|312890548|ref|ZP_07750084.1| AAA ATPase central domain protein [Mucilaginibacter paludis DSM 18603] gi|311297006|gb|EFQ74139.1| AAA ATPase central domain protein [Mucilaginibacter paludis DSM 18603] Length = 426 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 16/143 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E+ GQ V +A ++ + L ++F GPPG+GKTTLA ++++ L Sbjct: 11 MRPKNLDEYVGQKHLVGPGAVLRKAIESGS--LPSMIFWGPPGVGKTTLAYIISQSLDRP 68 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S S VI KA L L VLFIDEIHR S ++ L A+E Sbjct: 69 FFSLSAINSGVKDVREVIEKASLLKQQDATLP---VLFIDEIHRFSKSQQDSLLGAVERG 125 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 126 IVTLIGATTENPSFEVISALLSR 148 >gi|296129660|ref|YP_003636910.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM 20109] gi|296021475|gb|ADG74711.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM 20109] Length = 473 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 15/136 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEAL--DHVLFVGPPGLGKTTLAQVVAR 76 +RPRTL E GQ + S L+ +E A A V+ GPPG GKTTLA +VA Sbjct: 27 MRPRTLAEVAGQGHLLVPGSPLRRLVEPADDAARRAAPSSVVLWGPPGTGKTTLAYLVAS 86 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129 G F S V A D+ A++ + R VLFIDE+HR + ++ L P++ Sbjct: 87 TSGRRFVELSA-VTAGVKDVRAVVEDARRRLAADGSETVLFIDEVHRFTKAQQDALLPSV 145 Query: 130 EDFQLDLMVG--EGPS 143 E+ + L+ E PS Sbjct: 146 ENRWVTLVAATTENPS 161 >gi|28198581|ref|NP_778895.1| recombination factor protein RarA [Xylella fastidiosa Temecula1] gi|182681262|ref|YP_001829422.1| recombination factor protein RarA [Xylella fastidiosa M23] gi|28056665|gb|AAO28544.1| ATPase [Xylella fastidiosa Temecula1] gi|182631372|gb|ACB92148.1| AAA ATPase central domain protein [Xylella fastidiosa M23] gi|307579712|gb|ADN63681.1| recombination factor protein RarA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 453 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 39/269 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA--RAEALDHV---LFVGPPGLGKTTLAQVVAR 76 +RPRTL E GQ K ++ +A RA A HV + GPPG GKTTL+ ++A Sbjct: 27 MRPRTLHEMVGQ-------KRLLDPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAH 79 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 + FRS S V++ ++ +L + R VLF+DE+HR + + ++ P +E Sbjct: 80 YIDAEFRSVSA-VLSGLPEVRQILADAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIE 138 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + + VG S ++N + + + RV +L + ++ + E Sbjct: 139 RGSI-IFVGATTENPSFELN----SALLSRCRVHVLEAVSSQDIVVALQRALQDTE---- 189 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 RG + V+ + EIA + G R A LL AE+A + IT ++ L Sbjct: 190 ---RGLGGQKIEVSQASLLEIAKAADGDVRRALTLLEIA---AELAQDEQITADLLSQVL 243 Query: 251 LRLA--IDKMG---FDQLDLRYLTMIARN 274 + DK G +DQ+ + ++ + N Sbjct: 244 ADRSRRFDKRGEQFYDQISALHKSVRSSN 272 >gi|254931449|ref|ZP_05264808.1| recombination factor protein RarA [Listeria monocytogenes HPB2262] gi|300764820|ref|ZP_07074810.1| ATPase [Listeria monocytogenes FSL N1-017] gi|293583000|gb|EFF95032.1| recombination factor protein RarA [Listeria monocytogenes HPB2262] gi|300514496|gb|EFK41553.1| ATPase [Listeria monocytogenes FSL N1-017] gi|332311956|gb|EGJ25051.1| hypothetical AAA domain-containing protein YrvN [Listeria monocytogenes str. Scott A] Length = 427 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|237800567|ref|ZP_04589028.1| recombination factor protein RarA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023427|gb|EGI03484.1| recombination factor protein RarA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 440 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 11/136 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V+A ++ + R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL 133 Query: 135 DLMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 -IFIGATTENPSFELN 148 >gi|118473523|ref|YP_887339.1| recombination factor protein RarA [Mycobacterium smegmatis str. MC2 155] gi|118174810|gb|ABK75706.1| AAA ATPase, central region [Mycobacterium smegmatis str. MC2 155] Length = 447 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L+E GQ ++A S L+ +E + A + V+ GPPG GKTTLA ++++ Sbjct: 35 MRPAGLDEVVGQSHLLQAGSPLRRLVEGSGAAS-----VILYGPPGTGKTTLASLISQAT 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A ++ A++ + VLFIDE+HR S ++ L A+E+ Sbjct: 90 GRRFEALSA-LTAGVKEVRAVIDTARRAAVHGQQTVLFIDEVHRFSKTQQDALLAAVENR 148 Query: 133 QLDLMVG--EGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 149 VVLLVAATTENPSFSVVAPLLSR 171 >gi|145219908|ref|YP_001130617.1| recombination factor protein RarA [Prosthecochloris vibrioformis DSM 265] gi|145206072|gb|ABP37115.1| Recombination protein MgsA [Chlorobium phaeovibrioides DSM 265] Length = 445 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 13/117 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L++ GQ + L+ F+ + L ++F GPPG GKTTLA++ A L Sbjct: 31 VRPRSLDDMRGQEHLLGPDGPLRRFLSGGQ-----LPSMIFWGPPGTGKTTLAEICASAL 85 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 G F + S + +A AA +R +LFIDEIHR + ++ L A+E Sbjct: 86 GFRFETLSAIDSGVKEVRRALSDAASARERGERTILFIDEIHRFNKAQQDTLLHAIE 142 >gi|227833218|ref|YP_002834925.1| recombination factor protein [Corynebacterium aurimucosum ATCC 700975] gi|262184204|ref|ZP_06043625.1| recombination factor protein RarA [Corynebacterium aurimucosum ATCC 700975] gi|227454234|gb|ACP32987.1| recombination factor protein [Corynebacterium aurimucosum ATCC 700975] Length = 451 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP++L+E GQ +E + L+ +E + EA V+ GPPG GKTTLA ++A L Sbjct: 35 MRPQSLDEVVGQKHLLEPGTPLRRLVEGS---GEA--SVILYGPPGTGKTTLASLIASSL 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G NF S + + + ++T+ R VLFIDE+HR S ++ L A+E+ Sbjct: 90 GDNFIGLSA-LDSGVKQVREVITHARRELIEGRRTVLFIDEVHRFSKTQQDALLAAVENR 148 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 149 TVLLVAATTENPS 161 >gi|319442139|ref|ZP_07991295.1| recombination factor protein RarA [Corynebacterium variabile DSM 44702] Length = 457 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 11/144 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ R E+ V+ GPPG GKTT+A ++A G Sbjct: 41 MRPRTLDEVVGQSHVLGESSPLRRLIDGRGES--SVILYGPPGTGKTTVASLIAGGSGRR 98 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + + ++ +++ + R VLFIDE+HR S ++ L A+E+ + Sbjct: 99 FEALSA-LNSGVKEVRSVIADARRRLADGIPTVLFIDEVHRFSKTQQDALLSAVENRTVL 157 Query: 136 LMVG--EGPSARSVKINLSRFTLI 157 L+ E PS V LSR L+ Sbjct: 158 LVAATTENPSFSVVAPLLSRSLLV 181 >gi|294792127|ref|ZP_06757275.1| ATPase, AAA family [Veillonella sp. 6_1_27] gi|294457357|gb|EFG25719.1| ATPase, AAA family [Veillonella sp. 6_1_27] Length = 433 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR---EL 78 +RP L+ GQ +A F+ A + + +LF GP G GKTTLA ++A+ Sbjct: 20 MRPTKLDHLYGQEKAVGK-GTFLRAM-VEKDTIPSMLFYGPCGTGKTTLAGIIAKVSNSY 77 Query: 79 GVNFRSTS---GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 VN +T+ G + D + +L+ R +LF+DEIHR + +++L P +ED + Sbjct: 78 FVNLNATNVGIGELRTIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVEDGTI- 136 Query: 136 LMVGEGPSARSVKIN---LSRFTLI 157 +++G ++N LSR LI Sbjct: 137 ILIGATTENPFFEVNRPLLSRLRLI 161 >gi|283478929|emb|CAY74845.1| Uncharacterized protein ycaJ [Erwinia pyrifoliae DSM 12163] Length = 428 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL E+ GQ + K A +AR L ++ GPPG GKTTLA+++ R + Sbjct: 1 MRPRTLAEYIGQQHLLAAGKPLPRAIEARH--LHSMILWGPPGTGKTTLAEIIGRYGQAD 58 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 59 VERISAVTSGVKEIREAIERARQNRHAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118 Query: 137 M--VGEGPS 143 + E PS Sbjct: 119 VGATTENPS 127 >gi|255325072|ref|ZP_05366178.1| recombination factor protein RarA [Corynebacterium tuberculostearicum SK141] gi|255297637|gb|EET76948.1| recombination factor protein RarA [Corynebacterium tuberculostearicum SK141] Length = 547 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ + K + EA V+ GPPG GKTT+A ++A ++G N Sbjct: 121 MRPQNLDEVVGQDHLLAPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIASQMGQN 178 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + + ++T+ R VLFIDE+HR S ++ L A+E+ + Sbjct: 179 FVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVENRTVL 237 Query: 136 LMVG--EGPS 143 L+ E PS Sbjct: 238 LVAATTENPS 247 >gi|291087419|ref|ZP_06571936.1| replication-associated recombination protein A [Clostridium sp. M62/1] gi|291075102|gb|EFE12466.1| replication-associated recombination protein A [Clostridium sp. M62/1] Length = 484 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 16/140 (11%) Query: 20 SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S +RP +LEEF GQ L+ IE K + ++F GPPG+GKTTLA ++A Sbjct: 40 SRMRPESLEEFVGQSHLLGEGMLLRNLIERDK-----VSSMIFWGPPGVGKTTLAGIIAN 94 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V + ++ ++ E+ + V+F+DEIHR + ++ P +E Sbjct: 95 RTNAGFINFSA-VTSGIKEIREVMAKAEEARHRGMKTVVFVDEIHRFNKAQQDAFLPYVE 153 Query: 131 DFQLDLMVGEGPSARSVKIN 150 + +++G S +IN Sbjct: 154 RGSI-ILIGATTENPSFEIN 172 >gi|299822828|ref|ZP_07054714.1| ATPase [Listeria grayi DSM 20601] gi|299816357|gb|EFI83595.1| ATPase [Listeria grayi DSM 20601] Length = 424 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKSLDEIVGQTHLVGEGKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPHLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|319407398|emb|CBI81049.1| ATPase, AAA family [Bartonella sp. 1-1C] Length = 439 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 35/206 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L E GQ N + E +R + + ++F GPPG GKTT+A+++A E Sbjct: 24 MRPRSLHEMVGQ-----NHLIGAEGFLSRMVASGSFSSMIFWGPPGTGKTTVARLLALET 78 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 F S + +L + R +LFIDEIHR + ++ P MED Sbjct: 79 NFAFEQVSA-IFTGISELKKIFEVARSRLMSGCQTLLFIDEIHRFNRSQQDSFLPFMEDG 137 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 + ++VG S ++N A +R +LT D E L ++ Sbjct: 138 TI-ILVGATTENPSFELN------AALLSRARVLTFRAHDN------------ESLDILL 178 Query: 193 QRGAKLTGLAVT-DEAACEIAMRSRG 217 +R K+ G ++ D+ A EI +R G Sbjct: 179 KRAEKVEGKSLPLDDHAREILIRISG 204 >gi|257485416|ref|ZP_05639457.1| recombination factor protein RarA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 228 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + A L ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQGA--LHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|330900604|gb|EGH32023.1| recombination factor protein RarA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 440 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 11/136 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V+A ++ + R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL 133 Query: 135 DLMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 -IFIGATTENPSFELN 148 >gi|318057090|ref|ZP_07975813.1| recombination factor protein RarA [Streptomyces sp. SA3_actG] gi|318077863|ref|ZP_07985195.1| recombination factor protein RarA [Streptomyces sp. SA3_actF] Length = 447 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + A S L+ + V+ GPPG GKTTLA VV++ Sbjct: 23 MRPRTLDEVVGQQHLLGAGSPLRRLVGEGDGGPAGASSVILWGPPGTGKTTLAYVVSKAT 82 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRD-VLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ ++ +D VLF+DEIHR S ++ L PA+E+ Sbjct: 83 NARFVELSA-ITAGVKEVRTVIDGARRASGGYGKDTVLFLDEIHRFSKAQQDSLLPAVEN 141 Query: 132 FQLDLMV 138 + L+ Sbjct: 142 RWVTLIA 148 >gi|315038424|ref|YP_004031992.1| recombination factor protein RarA [Lactobacillus amylovorus GRL 1112] gi|312276557|gb|ADQ59197.1| recombination factor protein RarA [Lactobacillus amylovorus GRL 1112] Length = 420 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 2/110 (1%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+E GQ E K + + + +L GPPG GK++LA+++AR Sbjct: 11 MRPNNLKEIVGQQELLGKGKPLRQIIEQKVPI--SLLLWGPPGTGKSSLARIIARTNEYA 68 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + + KA L + T VL IDEIHR++ +++ L P +E+ Sbjct: 69 FASFNASIDNKAKLLNIIDTYPHQTFVLLIDEIHRMTKTLQDFLLPYLEN 118 >gi|126724895|ref|ZP_01740738.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2150] gi|126706059|gb|EBA05149.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2150] Length = 438 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 27/156 (17%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ + E GQ + L V +EA ++L ++F GPPG+GKTT+A+++A + Sbjct: 25 LRPKQISEVIGQAHVLGPEAPLGVMLEA-----KSLSSLIFWGPPGVGKTTIARLLADHV 79 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132 + F S + + DL + R +LF+DEIHR + ++ P ME+ Sbjct: 80 DLAFVQISA-IFSGVADLKKVFQAATIRHQNGQGTLLFVDEIHRFNKAQQDGFLPYMENG 138 Query: 133 QLDLMVG---EGPS--------ARSVKINLSRFTLI 157 + L+VG E PS +RS + L R +LI Sbjct: 139 TI-LLVGATTENPSFELNAALLSRSQVLVLERLSLI 173 >gi|117920496|ref|YP_869688.1| recombination factor protein RarA [Shewanella sp. ANA-3] gi|117612828|gb|ABK48282.1| Recombination protein MgsA [Shewanella sp. ANA-3] Length = 443 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 35/262 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT+ E+ GQ L+ +EA +A + ++ GPPG GKTTLA+++A Sbjct: 19 MRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + D+ A + + R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VTSGVKDIRAAIEQAQAVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + + +G S +IN + + RV L+ QD + I T Sbjct: 133 GTV-IFIGATTENPSFEIN----NALLSRARVYLIKRLSQDEI-------VHIITQALTD 180 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 +RG L + + ++A G R A LL + D VA + T E+ L+ Sbjct: 181 PERGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELMSDM--VADGGSFTTEM----LV 234 Query: 252 RLAIDKM-GFDQLDLRYLTMIA 272 ++A ++ GFD+ ++ +I+ Sbjct: 235 QVAGHQVAGFDKNGDQFYDLIS 256 >gi|325001185|ref|ZP_08122297.1| recombination factor protein RarA [Pseudonocardia sp. P1] Length = 462 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 23/159 (14%) Query: 11 NVSQEDADISL-LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 +V + DA ++ +RPR+L+E GQ +E + L+ +E A + VL GPPG G Sbjct: 23 SVPRPDAPLAARMRPRSLDEVVGQSELLEPGAPLRRLLEGGAAAS-----VLLYGPPGTG 77 Query: 67 KTTLAQVVARELGV--NFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRL 117 KTTLA+++A G +F + S + A +L A++ R VLFIDE+HR Sbjct: 78 KTTLARLMAGAGGAERHFVALSA-LSAGVKELRAVIEEARRRRDRSGTSTVLFIDEVHRF 136 Query: 118 SIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSR 153 S ++ L A+ED +L L+V E PS V LSR Sbjct: 137 SRTQQDALLGAVED-RLVLLVAATTENPSFSVVSPLLSR 174 >gi|89100968|ref|ZP_01173813.1| ATPase, AAA family domain protein [Bacillus sp. NRRL B-14911] gi|89084304|gb|EAR63460.1| ATPase, AAA family domain protein [Bacillus sp. NRRL B-14911] Length = 423 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 3/111 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+++E+ GQ K+ KAR L ++ GPPG+GKT++A +A Sbjct: 10 MRPKSIEDIIGQEHLVGEGKIIYRMVKARQ--LSSMILYGPPGIGKTSIASAIAGSTQFA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 FR+ + K ++ A + + +L +DE+HRL ++ L P +E+ Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGKVILLLDEVHRLDKAKQDFLLPYLEN 118 >gi|303229442|ref|ZP_07316232.1| recombination factor protein RarA [Veillonella atypica ACS-134-V-Col7a] gi|303230800|ref|ZP_07317547.1| recombination factor protein RarA [Veillonella atypica ACS-049-V-Sch6] gi|302514560|gb|EFL56555.1| recombination factor protein RarA [Veillonella atypica ACS-049-V-Sch6] gi|302515978|gb|EFL57930.1| recombination factor protein RarA [Veillonella atypica ACS-134-V-Col7a] Length = 434 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 14/146 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+ GQ +A F+ A + + +LF GP G GKTTLA ++A+ + Sbjct: 20 MRPTELDHLYGQEQAVGK-GTFLRAM-VEKDTIPSMLFYGPCGTGKTTLAGIIAKMSNSH 77 Query: 82 FRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + + A G+L ++ + L+ R +LF+DEIHR + +++L P +ED + Sbjct: 78 FVNLNA-TNAGIGELRNIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVEDGTI 136 Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157 +++G ++N LSR LI Sbjct: 137 -ILIGATTENPFFEVNRPLLSRLRLI 161 >gi|258511998|ref|YP_003185432.1| AAA ATPase central domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478724|gb|ACV59043.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 447 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 15/146 (10%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHV 57 MD L S + ++ +A ++ +RPR+L+E G L+ IE + L + Sbjct: 1 MDLFSLASEHEAEREAPLAYRMRPRSLDEMVGHENLVGRDGILRRMIERDR-----LMSI 55 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111 + GPPG GKTT+A+V+AR+ F + A A+ T E+RD V+F+ Sbjct: 56 ILYGPPGTGKTTIAEVIARQTKARFIPLNAVTSGIADVRKAVETAREERDLYARRTVVFL 115 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM 137 DEIHR + ++ L P +E L L+ Sbjct: 116 DEIHRFNKSQQDALLPHVEAGLLSLV 141 >gi|307946316|ref|ZP_07661651.1| replication-associated recombination protein A [Roseibium sp. TrichSKD4] gi|307769980|gb|EFO29206.1| replication-associated recombination protein A [Roseibium sp. TrichSKD4] Length = 437 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 13/144 (9%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 L ++V++ AD LRP+ L++ GQ K R+ L ++F GPPG GK Sbjct: 10 LDKDVNRPLAD--RLRPQKLDDVVGQDHLLGPDGTLSRMLKTRS--LGSLIFWGPPGTGK 65 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121 TT+A+++A E + F S + + DL + R +LF+DEIHR + Sbjct: 66 TTIARLLADETDLAFEQISA-IFSGVADLKKVFETARARRMGGRGTLLFVDEIHRFNRAQ 124 Query: 122 EEILYPAMEDFQLDLM--VGEGPS 143 ++ P MED + L+ E PS Sbjct: 125 QDSFLPVMEDGTITLVGATTENPS 148 >gi|302517979|ref|ZP_07270321.1| recombination factor protein RarA [Streptomyces sp. SPB78] gi|302426874|gb|EFK98689.1| recombination factor protein RarA [Streptomyces sp. SPB78] Length = 451 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + A S L+ + V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLGAGSPLRRLVGEGDGGPAGASSVILWGPPGTGKTTLAYVVSKAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRD-VLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ ++ +D VLF+DEIHR S ++ L PA+E+ Sbjct: 87 NARFVELSA-ITAGVKEVRTVIDGARRASGGYGKDTVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|258593286|emb|CBE69625.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [NC10 bacterium 'Dutch sediment'] Length = 423 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 11/144 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+EF GQ K+ A +A L ++ GPPG GKTTLA ++A Sbjct: 1 MRPRTLQEFVGQEHLLGEGKLLRRAMEA--GELPSLILWGPPGSGKTTLAFLLAERCKAT 58 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F+ S V + ++ ++ + R +LFIDEIHR + ++ P +E + Sbjct: 59 FQPFSA-VTSGIKEIKEVIVRAQQERGYGRRTLLFIDEIHRFNKAQQDAFLPHVEGGTIV 117 Query: 136 LM--VGEGPSARSVKINLSRFTLI 157 L+ E PS + LSR ++ Sbjct: 118 LIGATTENPSFEVIAPLLSRAKVV 141 >gi|254719264|ref|ZP_05181075.1| recombination factor protein RarA [Brucella sp. 83/13] gi|265984263|ref|ZP_06096998.1| recombination factor protein RarA [Brucella sp. 83/13] gi|306838015|ref|ZP_07470873.1| recombination factor protein RarA [Brucella sp. NF 2653] gi|264662855|gb|EEZ33116.1| recombination factor protein RarA [Brucella sp. 83/13] gi|306406939|gb|EFM63160.1| recombination factor protein RarA [Brucella sp. NF 2653] Length = 437 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 23 LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLAGETDLA 80 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL AA + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N A +R +LT + ++ E + T+++R Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180 Query: 196 AKL--TGLAVTDEAACEIAMRSRGTPRIA 222 + GL + DEA + + G R A Sbjct: 181 EEQEGQGLPLDDEARASLIRMADGDGRAA 209 >gi|28378253|ref|NP_785145.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1] gi|28271088|emb|CAD63993.1| chromosome segregation helicase (putative) [Lactobacillus plantarum WCFS1] Length = 458 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 11/164 (6%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M +E L + + S +RP TL +F GQ K+ + + L ++F G Sbjct: 1 MRQESLFNPDKSSSSPLAYRVRPVTLADFKGQEHLLGPGKLLRQLIAE--DQLPSLIFWG 58 Query: 62 PPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHR 116 PPG+GKTTLA+++A++ +F + TSG I + D A + ++ ++FIDEIHR Sbjct: 59 PPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIVFIDEIHR 118 Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLI 157 + ++ P +E + L +G S +IN LSR ++ Sbjct: 119 FNKAQQDAFLPYVERGSITL-IGATTENPSFEINAALLSRCKVL 161 >gi|241763321|ref|ZP_04761377.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN] gi|241367473|gb|EER61772.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN] Length = 449 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 25/213 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ + S L+ +EA + + ++ GPPG GKTTLA ++AR Sbjct: 26 MRPRSLDEMVGQRRLLAPRSALRRAVEAGRVHS-----MVLWGPPGCGKTTLALLLARYA 80 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FRS S P + + AA R VLF+DE+HR + ++ P +E Sbjct: 81 DAEFRSVSAVLAGLPEVRQVLAEAAHRFAQGRRTVLFVDEVHRFNKGQQDAFLPHIERGS 140 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + + VG S ++N + + + RV ++ + +RL + E Sbjct: 141 I-VFVGATTENPSFELN----SALLSRCRVHVMEAVSVEDIVQALRLALDDPE------- 188 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 RG G+ V+ E+ EIA + G R A LL Sbjct: 189 RGLGNDGVQVSGESLREIARAADGDVRRALTLL 221 >gi|240948710|ref|ZP_04753082.1| recombination factor protein RarA [Actinobacillus minor NM305] gi|240296926|gb|EER47504.1| recombination factor protein RarA [Actinobacillus minor NM305] Length = 444 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L E+ GQ K A +++ ++F GPPG GKTTLA+++A + Sbjct: 19 MRPRNLSEYIGQHHLIGEGKPLRRAIESKHP--HSMIFWGPPGTGKTTLAEIIAYHFDAD 76 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A L R +LF+DE+HR + ++ P +ED + + Sbjct: 77 VERLSAVTSGIKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPYIEDGTI-I 135 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171 +G S ++N + + RV +L PLQ Sbjct: 136 FIGATTENPSFELN----NALLSRARVYIL-KPLQ 165 >gi|300767183|ref|ZP_07077095.1| replication-associated recombination protein A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180402|ref|YP_003924530.1| replication-associated recombination protein A [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495002|gb|EFK30158.1| replication-associated recombination protein A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045893|gb|ADN98436.1| replication-associated recombination protein A [Lactobacillus plantarum subsp. plantarum ST-III] Length = 449 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 11/164 (6%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M +E L + + S +RP TL +F GQ K+ + + L ++F G Sbjct: 1 MRQESLFNPDKSSSSPLAYRVRPVTLADFKGQEHLLGPGKLLRQLIAE--DQLPSLIFWG 58 Query: 62 PPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHR 116 PPG+GKTTLA+++A++ +F + TSG I + D A + ++ ++FIDEIHR Sbjct: 59 PPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIVFIDEIHR 118 Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLI 157 + ++ P +E + L +G S +IN LSR ++ Sbjct: 119 FNKAQQDAFLPYVERGSITL-IGATTENPSFEINAALLSRCKVL 161 >gi|88812897|ref|ZP_01128141.1| ATPase, AAA family protein [Nitrococcus mobilis Nb-231] gi|88789819|gb|EAR20942.1| ATPase, AAA family protein [Nitrococcus mobilis Nb-231] Length = 435 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 15/119 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L EF GQ ++A L+ IEA + + ++F GPPG GKTTLA+++A Sbjct: 12 MRPRLLTEFVGQSHLLDAGKPLREVIEAGRPHS-----MVFWGPPGTGKTTLARLIAEAT 66 Query: 79 GVNFRSTSGPVIAKAGDL-AALLTNLEDR-----DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+A ++ A T +R +LF+DE+HR + ++ P +ED Sbjct: 67 EAEFLALSA-VMAGVKEIRQASATGQANRARGRQTILFVDEVHRFNKAQQDAFLPFIED 124 >gi|154508869|ref|ZP_02044511.1| hypothetical protein ACTODO_01380 [Actinomyces odontolyticus ATCC 17982] gi|153798503|gb|EDN80923.1| hypothetical protein ACTODO_01380 [Actinomyces odontolyticus ATCC 17982] Length = 447 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 11/133 (8%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+E GQ L+ + + A+ V+ GPPG GKTTLA ++AR Sbjct: 27 MRPTTLDEVVGQSHLLGEGAPLRRLLSPGSSDGVAVSSVVLWGPPGTGKTTLAYLIARAS 86 Query: 79 GVNF------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F S V D L + + +LF+DE+HR S ++ L PA+E+ Sbjct: 87 GRRFVELSAVSSGVSDVRRVVDDARRTLASGGEETILFVDEVHRFSKSQQDSLLPAVENR 146 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 147 WVVLVAATTENPS 159 >gi|269798266|ref|YP_003312166.1| ATPase AAA [Veillonella parvula DSM 2008] gi|282850504|ref|ZP_06259883.1| recombination factor protein RarA [Veillonella parvula ATCC 17745] gi|269094895|gb|ACZ24886.1| AAA ATPase central domain protein [Veillonella parvula DSM 2008] gi|282579997|gb|EFB85401.1| recombination factor protein RarA [Veillonella parvula ATCC 17745] Length = 433 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 14/146 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+ GQ +A F+ A + + +LF GP G GKTTLA ++A+ + Sbjct: 20 MRPTKLDHLYGQEKAIGK-GTFLRAM-VEKDTIPSMLFYGPCGTGKTTLAGIIAKVSNSH 77 Query: 82 FRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + + A G+L ++ + L+ R +LF+DEIHR + +++L P +ED + Sbjct: 78 FVNLNA-TNAGIGELRTIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVEDGTI 136 Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157 +++G ++N LSR LI Sbjct: 137 -ILIGATTENPFFEVNRPLLSRLRLI 161 >gi|162456465|ref|YP_001618832.1| recombination factor protein RarA [Sorangium cellulosum 'So ce 56'] gi|161167047|emb|CAN98352.1| ATPase [Sorangium cellulosum 'So ce 56'] Length = 460 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 18/134 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV---LFVGPPGLGKTTLAQVVAREL 78 +RPR+LE+ GQ K+ ARA A D + + GPPG GKTTLA+VVA Sbjct: 42 MRPRSLEDMIGQGHLLGEGKLL-----ARAIAADRIPSMILWGPPGAGKTTLARVVAHTT 96 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F + V+ +L +L R +LF+DEIHR + ++ P +ED Sbjct: 97 NARFVPFNA-VLGGVPELREILAQARAARSYEGKRTILFVDEIHRFNKAQQDAFLPHVED 155 Query: 132 FQLDLM--VGEGPS 143 + L+ E PS Sbjct: 156 GTITLIGATTENPS 169 >gi|74317514|ref|YP_315254.1| recombination factor protein RarA [Thiobacillus denitrificans ATCC 25259] gi|74057009|gb|AAZ97449.1| putative helicase ATPase [Thiobacillus denitrificans ATCC 25259] Length = 442 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL++ GQ L++ ++ K L ++ GPPG+GKTTLA++ A+ Sbjct: 27 LRPRTLDDVVGQSHLLGPGKPLRLAFDSGK-----LHSMILWGPPGVGKTTLARLTAQAF 81 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED-- 131 G +F + S + I +A + A + L +LF+DE+HR + ++ P +E Sbjct: 82 GADFIAISAVLSGVKDIREAVERARMNQKLGRATILFVDEVHRFNKSQQDAFLPHVESGL 141 Query: 132 FQLDLMVGEGPSARSVKINLSR 153 F E PS V LSR Sbjct: 142 FTFIGATTENPSFEVVGALLSR 163 >gi|307545643|ref|YP_003898122.1| recombination factor protein RarA [Halomonas elongata DSM 2581] gi|307217667|emb|CBV42937.1| recombination factor protein RarA [Halomonas elongata DSM 2581] Length = 446 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 18/168 (10%) Query: 7 LLSRNVSQEDADISL-LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGP 62 L + S + A ++ +RPR L ++ GQ V ++ +E R+ ++ GP Sbjct: 3 LFQQATSDQHAPLAWRMRPRRLADYVGQQALVGPDKPVRRMVETGTVRS-----MILWGP 57 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRL 117 PG GKTTLA+++A E G + S + I +A D A + + +LF+DEIHRL Sbjct: 58 PGTGKTTLAEILAEESGAHLERLSAVMAGVKDIREAVDRARVAQGQDRGTLLFLDEIHRL 117 Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPS--ARSVKINLSRFTLIAATT 161 + ++ L P +E L L+ E PS S ++ +R ++ A T Sbjct: 118 NKSQQDALLPHVESGLLTLIGATTENPSFEVNSALLSRARVHVLKALT 165 >gi|239832095|ref|ZP_04680424.1| recombination factor protein RarA [Ochrobactrum intermedium LMG 3301] gi|239824362|gb|EEQ95930.1| recombination factor protein RarA [Ochrobactrum intermedium LMG 3301] Length = 438 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 23 LRPRHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLAGETDLA 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKKVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKIN 150 +++G S ++N Sbjct: 139 ILIGATTENPSFELN 153 >gi|295839928|ref|ZP_06826861.1| AAA family ATPase [Streptomyces sp. SPB74] gi|197696758|gb|EDY43691.1| AAA family ATPase [Streptomyces sp. SPB74] Length = 451 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + A S L+ + V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLGAGSPLRRLVGEGNGGPAGASSVILWGPPGTGKTTLAYVVSKAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRD-VLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ ++ +D VLF+DEIHR S ++ L PA+E+ Sbjct: 87 DARFVELSA-ITAGVKEVRTVIDGARRASGGYGKDTVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|121998175|ref|YP_001002962.1| recombination factor protein RarA [Halorhodospira halophila SL1] gi|121589580|gb|ABM62160.1| Recombination protein MgsA [Halorhodospira halophila SL1] Length = 427 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RPR++EE GQ + ++ A R ++ + GPPG GKTTLA +VA Sbjct: 13 MRPRSIEEMAGQGHLLDTGRALAQSVAAGRPHSM---ILWGPPGSGKTTLAGLVAEHAEA 69 Query: 81 NFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V A ++ A + D R VLF+DE+HR + ++ P +ED + Sbjct: 70 RFLTLSA-VAAGVREIRAAMAEATDLWQAGRRTVLFVDEVHRFNKAQQDAFLPHVEDGTV 128 Query: 135 DLMVG---EGPSARSVKINLSR 153 + VG E PS K LSR Sbjct: 129 -VFVGATTENPSFELNKALLSR 149 >gi|298207712|ref|YP_003715891.1| putative ATPase, AAA family protein [Croceibacter atlanticus HTCC2559] gi|83850349|gb|EAP88217.1| putative ATPase, AAA family protein [Croceibacter atlanticus HTCC2559] Length = 425 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L+ + Q + + +A L ++F GPPG+GKTTLA ++A E Sbjct: 9 LRPKSLDSYISQKHLVGQDGSL--SKQIKAGVLPSLIFWGPPGVGKTTLANIIANESDRP 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S S VI KA L ++ +LFIDEIHR S ++ L A+E Sbjct: 67 FYSLSAINSGVKDVREVIEKAKKSDGLFSS--KNPLLFIDEIHRFSKSQQDSLLGAVEKG 124 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147 >gi|300703422|ref|YP_003745024.1| replicatioN-associated recombination protein a [Ralstonia solanacearum CFBP2957] gi|299071085|emb|CBJ42394.1| Replication-associated recombination protein A [Ralstonia solanacearum CFBP2957] Length = 434 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 109/263 (41%), Gaps = 51/263 (19%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E GQ L++ ++ K + ++F GPPG+GKTTLA++ A Sbjct: 17 LRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTASAF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S + I +A + A +LF+DEIHR + ++ L P +E Sbjct: 72 KCEFIALSAVLSGVKDIREAMEQARQFLAQGKSTILFVDEIHRFNKSQQDALLPHVES-- 129 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEI-----ED 187 FT I ATT NP + + R Y + E+ Sbjct: 130 ------------------GLFTFIGATTE-----NPSFEVNSALLSRAQVYVLKSLTDEE 166 Query: 188 LKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 LK ++QR + L L D+A I + G R LL + + A A + I E Sbjct: 167 LKLLLQRAQEKALGDLEFEDKAVDTIVGYADGDARRFLNLLEQCKTAAGAAGVQKIDAEF 226 Query: 246 ADAALLRLA--IDKMG---FDQL 263 AL A DK G +DQ+ Sbjct: 227 IQNALSLNARRFDKGGDNFYDQI 249 >gi|251789956|ref|YP_003004677.1| recombination factor protein RarA [Dickeya zeae Ech1591] gi|247538577|gb|ACT07198.1| AAA ATPase central domain protein [Dickeya zeae Ech1591] Length = 434 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E GQ L++ ++ K + ++F GPPG+GKTTLA++ A Sbjct: 17 LRPRTLDEVIGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTANYF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALL----TNLE--DRDVLFIDEIHRLSIIVEEILYPAME 130 F + S V + D+ A + NL+ + +LF+DEIHR + ++ L P E Sbjct: 72 DCEFIALSA-VFSGVKDIRAAMEQAQQNLDRGKKTILFVDEIHRFNKSQQDALLPYAE 128 >gi|124266314|ref|YP_001020318.1| recombination factor protein RarA [Methylibium petroleiphilum PM1] gi|124259089|gb|ABM94083.1| Recombination protein MgsA [Methylibium petroleiphilum PM1] Length = 443 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 35/236 (14%) Query: 12 VSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 V+ +DA ++ LRP TL+E GQ + K ++AA A +L+ GPPG GKTTL Sbjct: 14 VASDDAPLAERLRPATLDEVIGQRQLLGEGKP-LQAAFASGRPHSMILW-GPPGTGKTTL 71 Query: 71 AQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 A+++A F + S + I A + A + + R ++F+DE+HR + ++ Sbjct: 72 ARLMAHAFDAQFIAISAVLGGVKDIRDAVEQAQVAQGMGRRTIVFVDEVHRFNKAQQDAF 131 Query: 126 YPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 P +E F E PS LSR T+ + PL D Sbjct: 132 LPHVESGLFTFIGATTENPSFEVNSALLSRATV--------HVLRPLDD----------- 172 Query: 184 EIEDLKTIVQRG-AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 +L +++RG A L G ++D A + + G R RLL + A +A A Sbjct: 173 --SELAELLERGRALLNGSPLSDAARTRLIAYADGDAR---RLLNTYENIARMAGA 223 >gi|306840328|ref|ZP_07473100.1| recombination factor protein RarA [Brucella sp. BO2] gi|306289727|gb|EFM60916.1| recombination factor protein RarA [Brucella sp. BO2] Length = 437 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 23 LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLAGETDLA 80 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL AA + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N A +R +LT + ++ E + T+++R Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180 Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222 + G L + DEA + + G R A Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209 >gi|254361649|ref|ZP_04977787.1| possible recombination ATPase [Mannheimia haemolytica PHL213] gi|261496364|ref|ZP_05992758.1| putative recombination ATPase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093167|gb|EDN74183.1| possible recombination ATPase [Mannheimia haemolytica PHL213] gi|261307949|gb|EEY09258.1| putative recombination ATPase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 445 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 13/118 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L E+ GQ L+ IEA + + ++F GPPG GKTTLA+++A L Sbjct: 19 MRPRNLAEYVGQSHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHL 73 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I + + A L R +LF+DE+HR + ++ P +ED Sbjct: 74 DAEVERISAVTSGVKEIREVIEQAKLNRQAGRRTLLFVDEVHRFNKSQQDAFLPHIED 131 >gi|118594713|ref|ZP_01552060.1| recombination protein [Methylophilales bacterium HTCC2181] gi|118440491|gb|EAV47118.1| recombination protein [Methylophilales bacterium HTCC2181] Length = 433 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 14/119 (11%) Query: 21 LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +LRP+ + + GQ+E +LKV IE ++L ++ GPPG+GKT++A V++ Sbjct: 12 ILRPKNVHDIVGQIELLGEGQSLKVAIEG-----KSLPSMILWGPPGVGKTSIAHVISNC 66 Query: 78 LGVNFRSTSGPV-----IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130 + F S S + I +A + A + + R+ +LF+DE+HR + ++ P +E Sbjct: 67 IDAEFLSISAVLSGVKEIREAIEKAQFMKEHQQRNTILFVDEVHRFNKSQQDAFLPHIE 125 >gi|86143957|ref|ZP_01062325.1| putative ATPase, AAA family protein [Leeuwenhoekiella blandensis MED217] gi|85829664|gb|EAQ48127.1| putative ATPase, AAA family protein [Leeuwenhoekiella blandensis MED217] Length = 425 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+++ Q + + K+ + ++ GPPG+GKTTLA ++A E Sbjct: 9 LRPKTLDDYLSQEHLVGDKGSLTSSIKSGV--IPSLILWGPPGVGKTTLASIIAEESKRP 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S VI KA + L T + +LFIDEIHR S ++ L A+E Sbjct: 67 FYVLSAINSGVKDVREVIDKAKNAGGLFT--QKNPLLFIDEIHRFSKSQQDSLLAAVEKG 124 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147 >gi|311739533|ref|ZP_07713368.1| replication-associated recombination protein A [Corynebacterium pseudogenitalium ATCC 33035] gi|311305349|gb|EFQ81417.1| replication-associated recombination protein A [Corynebacterium pseudogenitalium ATCC 33035] Length = 463 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ + K + EA V+ GPPG GKTT+A ++A ++G N Sbjct: 37 MRPQNLDEVVGQDHLLAPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIASQMGQN 94 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + + ++T+ R VLFIDE+HR S ++ L A+E+ + Sbjct: 95 FVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVENRTVL 153 Query: 136 LMVG--EGPS 143 L+ E PS Sbjct: 154 LVAATTENPS 163 >gi|302533391|ref|ZP_07285733.1| LOW QUALITY PROTEIN: recombination factor protein RarA [Streptomyces sp. C] gi|302442286|gb|EFL14102.1| LOW QUALITY PROTEIN: recombination factor protein RarA [Streptomyces sp. C] Length = 340 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L+E GQ ++ S L+ + V+ GPPG+GKTTLA VV++ Sbjct: 27 MRPRNLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGASSVILWGPPGIGKTTLAYVVSQAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ + VLF+DEIHR S ++ L PA+E+ Sbjct: 87 RKRFVELSA-ITAGVKEVRAVIEGAKRAAGGYGKETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|189460834|ref|ZP_03009619.1| hypothetical protein BACCOP_01481 [Bacteroides coprocola DSM 17136] gi|189432408|gb|EDV01393.1| hypothetical protein BACCOP_01481 [Bacteroides coprocola DSM 17136] Length = 424 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 18/147 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL+++ GQ V + L+ I++ + + + GPPG+GKTTLAQ++A L Sbjct: 9 MRPKTLDDYIGQKHLVGEGAVLRRMIDSGR-----ISSFILWGPPGVGKTTLAQIIANRL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 64 ETPFYTLSA-VTSGVKDVRDVIDKARSNRFFSQQSPILFIDEIHRFSKSQQDSLLGAVET 122 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156 + L+ E PS ++ LSR L Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149 >gi|167580959|ref|ZP_02373833.1| recombination factor protein RarA [Burkholderia thailandensis TXDOH] Length = 436 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 82/326 (25%), Positives = 136/326 (41%), Gaps = 58/326 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ LK+ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLADVIGQTHLLGEGKPLKLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + +D +L+ + Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLTED--------------ELRQL 171 Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 ++R L GLA D+A + + G R LL + + A A TI DAA Sbjct: 172 LKRAQDTALDGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 226 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 + A +TM AR F GG + ISA R + D ++ + Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273 Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332 P+ R ++ +AW+ +G+ P Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299 >gi|257464779|ref|ZP_05629150.1| recombination factor protein RarA [Actinobacillus minor 202] gi|257450439|gb|EEV24482.1| recombination factor protein RarA [Actinobacillus minor 202] Length = 426 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L E+ GQ K A +++ ++F GPPG GKTTLA+++A + Sbjct: 1 MRPRNLSEYIGQHHLIGEGKPLRRAIESKHP--HSMIFWGPPGTGKTTLAEIIAYHFDAD 58 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A L R +LF+DE+HR + ++ P +ED + + Sbjct: 59 VERLSAVTSGIKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPYIEDGTI-I 117 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171 +G S ++N + + RV +L PLQ Sbjct: 118 FIGATTENPSFELN----NALLSRARVYIL-KPLQ 147 >gi|241763747|ref|ZP_04761795.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN] gi|241367052|gb|EER61437.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN] Length = 437 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 84/327 (25%), Positives = 135/327 (41%), Gaps = 60/327 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ L++ E+ + + + GPPG+GKTT+A+++A Sbjct: 15 LRPRQLSEVIGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMADAF 69 Query: 79 GVNFRSTSGPVIAKAGDL--AALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAME 130 F S S V+ D+ A L ++ R ++F+DE+HR + ++ P +E Sbjct: 70 DAQFISISA-VLGGVKDIRDAVQLAESARDGLMQQRTIVFVDEVHRFNKSQQDAFLPHVE 128 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDL 188 FT I ATT + + L R + + L +DL Sbjct: 129 S--------------------GLFTFIGATTENPSFEVNSALLSRAAVYV-LQPLSTDDL 167 Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 K IV L A+ +EA + + G R RLL + E+A A+ EI D Sbjct: 168 KQIVALAQSQQALPAIENEAIERLVAYADGDAR---RLLNTLETL-EMAAAQEQLAEITD 223 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 A LL++ ++M R GG +TISA R + D ++++ Sbjct: 224 AWLLKVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRM 270 Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332 PR R ++ +AW+ +G+ P Sbjct: 271 LDGGADPRYMARRIVRMAWEDIGLADP 297 >gi|227529658|ref|ZP_03959707.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis ATCC 49540] gi|227350448|gb|EEJ40739.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis ATCC 49540] Length = 432 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 74/177 (41%), Gaps = 26/177 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L E GQ K+ KAR L ++ GPPG GKT++A +A Sbjct: 8 MRPRNLSEVVGQQHLVGPNKIISRMVKARM--LSSLILYGPPGTGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ Sbjct: 66 FRKLNAATDTKKDLQVVAEEAKMSGTVILLLDEIHRLDKSKQDFLLPHLEN--------- 116 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLT-NP-LQDRFGIPIRLNFYEIEDLKTIVQRG 195 R LI ATT ++ NP ++ R I ++ IED+K V R Sbjct: 117 -----------GRIILIGATTENPYISINPAIRSRTQI-FPVHPLSIEDMKVAVNRA 161 >gi|294675887|ref|YP_003576502.1| ATPase AAA [Rhodobacter capsulatus SB 1003] gi|294474707|gb|ADE84095.1| ATPase, AAA family [Rhodobacter capsulatus SB 1003] Length = 435 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 11/144 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L E GQ A A +L V+ GPPG+GKTT+A+++A E Sbjct: 23 IRPQHLSEVIGQTHVLGPEGPL--GAMLAAGSLGSVILWGPPGVGKTTIARLLAHESDRA 80 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F S P + K D A L +LF+DEIHR + ++ P MED + L Sbjct: 81 FVQISAIFSGVPELRKVFDAAKLRMGQGRGTLLFVDEIHRFNKAQQDSFLPHMEDGTI-L 139 Query: 137 MVGEGPSARSVKIN---LSRFTLI 157 +VG S ++N LSR +I Sbjct: 140 LVGATTENPSFELNAALLSRAQVI 163 >gi|161485694|ref|NP_637341.2| recombination factor protein RarA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|162017102|ref|YP_243284.2| recombination factor protein RarA [Xanthomonas campestris pv. campestris str. 8004] gi|188991669|ref|YP_001903679.1| recombination factor protein RarA [Xanthomonas campestris pv. campestris str. B100] gi|167733429|emb|CAP51630.1| ATPase [Xanthomonas campestris pv. campestris] Length = 456 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + A S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 29 MRPRTLDEMVGQKRLLAADSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F++ S V++ D+ +L R VLF+DE+HR + ++ P +E Sbjct: 84 DAEFKAISA-VLSGLPDVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQQDAFLPHIERG 142 Query: 133 QLDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 143 TI-LFVGATTENPSFELN 159 >gi|222111884|ref|YP_002554148.1| recombination factor protein rara [Acidovorax ebreus TPSY] gi|221731328|gb|ACM34148.1| AAA ATPase central domain protein [Acidovorax ebreus TPSY] Length = 442 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 81/325 (24%), Positives = 133/325 (40%), Gaps = 56/325 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR+L E GQ L++ E+ + + + GPPG+GKTT+A+++A Sbjct: 16 LRPRSLAEVIGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMAEAF 70 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRLSIIVEEILYPAME 130 F S S V+ D+ + ++ R ++F+DE+HR + ++ P +E Sbjct: 71 DAQFISISA-VLGGVKDIRDAVQQAESARDGLMQQRTIVFVDEVHRFNKSQQDAFLPHVE 129 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 L VG S ++N + + A + PL +DLK Sbjct: 130 S-GLFTFVGATTENPSFEVNSALLSRAAV-----YVLQPLGS-------------DDLKQ 170 Query: 191 IVQRGAKLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IV + L L + AA E + + G R RLL + A I R I DA Sbjct: 171 IVAKAQALQALPAIENAALERLIAYADGDAR---RLLNTLETLEVTASQAGIER-IEDAW 226 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 LL++ ++M R GG +TISA R + D ++++ Sbjct: 227 LLQVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRMLD 273 Query: 310 IQRTPR--GRLLMPIAWQHLGIDIP 332 PR R ++ +AW+ +G+ P Sbjct: 274 GGADPRYMARRIVRMAWEDIGLADP 298 >gi|163752528|ref|ZP_02159714.1| ATPase, AAA family protein [Shewanella benthica KT99] gi|161327583|gb|EDP98781.1| ATPase, AAA family protein [Shewanella benthica KT99] Length = 443 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 35/262 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP LE+F GQ L+ +EA +A + +LF GPPG GKTTLA++VA Sbjct: 19 MRPEVLEQFIGQSHLLGEGKPLRKALEAGRAHS-----MLFWGPPGTGKTTLAELVAHYA 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + ++ + + ++ R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VTSGVKEIRTAIEHAKNVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + + VG S +IN + + RV L+ D +R + + Sbjct: 133 GTV-IFVGATTENPSFEIN----NALLSRARVYLIKRLTNDEIIQIVRQALIDND----- 182 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE-IADAAL 250 RG L + D A ++A G R A L+ + D +A ++ T + I + A Sbjct: 183 --RGLGKRQLKIPDAVAEKLANVCDGDARKALNLIELMSDM--IADGESFTEQMIIEVAG 238 Query: 251 LRLAIDKMGFDQLDLRYLTMIA 272 +LA GFD+ ++ +I+ Sbjct: 239 QQLA----GFDKNGDQFYDLIS 256 >gi|269216870|ref|ZP_06160724.1| replication-associated recombination protein A [Slackia exigua ATCC 700122] gi|269129677|gb|EEZ60761.1| replication-associated recombination protein A [Slackia exigua ATCC 700122] Length = 448 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 14/167 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79 LRPR+L+E GQ KV ++ + + ++F GPPG+GKTTLA+V+A + Sbjct: 26 LRPRSLDEVVGQQHLIGPGKVLRRIIES--DQVSSMIFWGPPGVGKTTLARVIADQTEAR 83 Query: 80 -VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 +NF + + + I A L R ++F+DEIHR + ++ P +E + L Sbjct: 84 FINFSAVTSGIKEIRTIMQEADAQRGLGRRTIVFVDEIHRFNKAQQDAFLPFVEKGAITL 143 Query: 137 M--VGEGPSARSVKINLSR---FTLIAATTR--VGLLTNPLQDRFGI 176 + E PS LSR F L A T V LL L D G Sbjct: 144 IGATTENPSFEVNGALLSRCKVFVLKALTENDVVELLKRALSDERGF 190 >gi|239939946|ref|ZP_04691883.1| recombination factor protein RarA [Streptomyces roseosporus NRRL 15998] gi|239986430|ref|ZP_04707094.1| recombination factor protein RarA [Streptomyces roseosporus NRRL 11379] gi|291443377|ref|ZP_06582767.1| recombination factor protein RarA [Streptomyces roseosporus NRRL 15998] gi|291346324|gb|EFE73228.1| recombination factor protein RarA [Streptomyces roseosporus NRRL 15998] Length = 455 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 12/127 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ ++ S L+ + A A V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLKPGSPLRRLVGDGGGPAGA-SSVILWGPPGTGKTTLAYVVSKAT 85 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ + VLF+DEIHR S ++ L PA+E+ Sbjct: 86 NKRFVELSA-ITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 144 Query: 132 FQLDLMV 138 + L+ Sbjct: 145 RWVTLIA 151 >gi|228960671|ref|ZP_04122316.1| hypothetical protein bthur0005_41330 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799035|gb|EEM46007.1| hypothetical protein bthur0005_41330 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 476 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 87/350 (24%), Positives = 137/350 (39%), Gaps = 65/350 (18%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++R+ +L V + +RP ++E GQ K+ +A ++ G Sbjct: 37 IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119 PPG GKT++A +A G FR + V D+ ++ + VL +DE+HRL Sbjct: 95 PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178 ++ L P +E L TLI ATT +NP I Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188 Query: 179 RLNFYEI-----EDLKTIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 R +E+ ED+ ++R G + VTDEA A S G R A L Sbjct: 189 RCQIFELHALTEEDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNAL 248 Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282 + F A IT EIA+ L + + DK G D+ L+ ++ G V Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306 Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 A+ L +I+ G +Q GR L+ +A++ +G+ P Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340 >gi|229152603|ref|ZP_04280792.1| hypothetical protein bcere0011_41380 [Bacillus cereus m1550] gi|228630864|gb|EEK87504.1| hypothetical protein bcere0011_41380 [Bacillus cereus m1550] Length = 476 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 87/350 (24%), Positives = 137/350 (39%), Gaps = 65/350 (18%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++R+ +L V + +RP ++E GQ K+ +A ++ G Sbjct: 37 IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119 PPG GKT++A +A G FR + V D+ ++ + VL +DE+HRL Sbjct: 95 PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178 ++ L P +E L TLI ATT +NP I Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188 Query: 179 RLNFYEI-----EDLKTIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 R +E+ ED+ ++R G + VTDEA A S G R A L Sbjct: 189 RCQIFELHALTEEDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNAL 248 Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282 + F A IT EIA+ L + + DK G D+ L+ ++ G V Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306 Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 A+ L +I+ G +Q GR L+ +A++ +G+ P Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340 >gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469] gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469] gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469] gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469] gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469] gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469] Length = 317 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 37/226 (16%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ED + RP++L+E GQ E LK ++ +A+ + H+LF GP G GKTT A + Sbjct: 2 EDVWVEKYRPKSLDEVVGQDEIVDRLKSYV-----KAKTMPHLLFAGPAGTGKTTCAIAL 56 Query: 75 AREL-GVNFRSTS-----------GPVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIV 121 AREL G N+R++ G V K + A N ++F+DE L+ Sbjct: 57 ARELFGENWRASFHELNASDERGIGIVRTKIKEYARTAAPNDVGFKIIFLDEADALTPDA 116 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 + L ME + RF L + + P+Q R + R Sbjct: 117 QAALRRTMEMYS----------------RTCRFIL--SCNYSSKIIEPIQSRCAV-FRFT 157 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 + ED+K ++ A G +T++A I S G R A +L+ Sbjct: 158 PLKSEDIKKRLKYIADSEGKKITEDALNAIVYISGGDMRKAINILQ 203 >gi|148828420|ref|YP_001293173.1| recombination factor protein RarA [Haemophilus influenzae PittGG] gi|148719662|gb|ABR00790.1| outer-membrane lipoprotein carrier protein precursor [Haemophilus influenzae PittGG] Length = 446 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++F GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMIFWGPPGTGKTTLAEIIAQCINAE 77 Query: 82 ----FRSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F TSG I +A D A + + +LF+DE+HR + ++ P +ED Sbjct: 78 VERIFAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|256044856|ref|ZP_05447760.1| recombination factor protein RarA [Brucella melitensis bv. 1 str. Rev.1] gi|260565542|ref|ZP_05836026.1| ATPase [Brucella melitensis bv. 1 str. 16M] gi|265991283|ref|ZP_06103840.1| recombination factor protein RarA [Brucella melitensis bv. 1 str. Rev.1] gi|260151610|gb|EEW86704.1| ATPase [Brucella melitensis bv. 1 str. 16M] gi|263002067|gb|EEZ14642.1| recombination factor protein RarA [Brucella melitensis bv. 1 str. Rev.1] Length = 437 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 23 LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 80 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL AA + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N A +R +LT + ++ E + T+++R Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180 Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222 + G L + DEA + + G R A Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209 >gi|221195770|ref|ZP_03568823.1| recombination factor protein RarA [Atopobium rimae ATCC 49626] gi|221184244|gb|EEE16638.1| recombination factor protein RarA [Atopobium rimae ATCC 49626] Length = 465 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TLE + GQ +A S L+ IE + L VL GP G GKTTLA ++A Sbjct: 23 MRPQTLEGYVGQTQAVGEGSWLRRAIEH-----DTLSSVLLYGPAGTGKTTLAHIIANST 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F S + DL + E R +LFIDEIHR + ++ L A+ED Sbjct: 78 HAAFVEVSA-ITGTVKDLRREIEAAESRLLTAGTRTILFIDEIHRFNRSQQDALLHAVED 136 >gi|110634002|ref|YP_674210.1| recombination factor protein RarA [Mesorhizobium sp. BNC1] gi|110284986|gb|ABG63045.1| Recombination protein MgsA [Chelativorans sp. BNC1] Length = 440 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 14/160 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E GQ R+ +L ++F GPPG GKTT+A+++A E + Sbjct: 24 LRPKRLDEVVGQEHLTGPEGALTRMI--RSGSLGSLVFWGPPGTGKTTVARLLAGETSMA 81 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL AA L + R +LF+DEIHR + ++ P MED + Sbjct: 82 FEQISA-IFSGVADLKKVFEAARLRRSQGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 139 Query: 136 LMVGEGPSARSVKIN---LSRF-TLIAATTRVGLLTNPLQ 171 ++VG S ++N LSR L+ + L N LQ Sbjct: 140 VLVGATTENPSFELNAALLSRARVLVFHSLEANSLENLLQ 179 >gi|307565626|ref|ZP_07628104.1| recombination factor protein RarA [Prevotella amnii CRIS 21A-A] gi|307345658|gb|EFN91017.1| recombination factor protein RarA [Prevotella amnii CRIS 21A-A] Length = 422 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 22/146 (15%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+++ GQ L+ IE+ + + + GPPG+GKTTLAQ++A L Sbjct: 8 MRPRSLDQYIGQKHLVGKNGVLRRMIES-----KHISSFILWGPPGVGKTTLAQIIANML 62 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VI +A TN ++FIDEIHR S ++ L A+ Sbjct: 63 ETPFYSVSAVTSGVKEVREVIERAKGNRFFSTN---SPIIFIDEIHRFSRAQQDSLLDAV 119 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153 E + L+ E PS + LSR Sbjct: 120 EKGIVTLIGATTENPSFEVITPLLSR 145 >gi|294655887|ref|XP_458100.2| DEHA2C09570p [Debaryomyces hansenii CBS767] gi|199430686|emb|CAG86171.2| DEHA2C09570p [Debaryomyces hansenii] Length = 842 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 29/130 (22%) Query: 21 LLRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ++RP++L E GQ +N +K FI R L ++ GPPG+GKT++A ++A+ Sbjct: 161 VIRPKSLNEVIGQTHLINNHNGTIKNFI-----RLGYLPSMILHGPPGVGKTSIASILAQ 215 Query: 77 ELG---VNFRSTSGPVIAKAGDLAALLTNLEDRD-------------VLFIDEIHRLSII 120 E G V F +T V DL L +E + V+FIDEIHR + Sbjct: 216 ETGYVFVEFSATDATV----SDLKELSITIEKENRKRSKKDMEYLRVVVFIDEIHRFTKT 271 Query: 121 VEEILYPAME 130 ++ L P +E Sbjct: 272 QQDFLLPFIE 281 >gi|332295959|ref|YP_004437882.1| AAA ATPase central domain protein [Thermodesulfobium narugense DSM 14796] gi|332179062|gb|AEE14751.1| AAA ATPase central domain protein [Thermodesulfobium narugense DSM 14796] Length = 420 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 18/128 (14%) Query: 16 DADISL---LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 +++ISL +RP+ L+EF GQ + + I AK R+ V+ GPPG+GKTT Sbjct: 6 ESEISLSQAIRPKNLDEFLGQSHLLRKDGTIYKSIVNAKLRS-----VILYGPPGVGKTT 60 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-LEDRD-----VLFIDEIHRLSIIVEE 123 LA+++A NF + V++ +L ++ ++D+ +LF+DE+HR + ++ Sbjct: 61 LAKIIASYSKANFEILNA-VLSGVPELRKIIEKAIDDKKRGIETLLFVDEVHRWNKAQQD 119 Query: 124 ILYPAMED 131 L P +ED Sbjct: 120 ALLPVLED 127 >gi|297155792|gb|ADI05504.1| recombination factor protein RarA [Streptomyces bingchenggensis BCW-1] Length = 533 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 11/127 (8%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ + V GPPG+GKTTLA VV++ Sbjct: 27 MRPRTLDEVVGQQHLLRPGSPLRRLVGEGSGGPAGPSSVFLWGPPGIGKTTLAYVVSQAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ VLF+DEIHR S ++ L PA+E+ Sbjct: 87 QKRFVELSA-ITAGVKEVRAVIDGARRSSGAYGRETVLFLDEIHRFSKAQQDSLLPAVEN 145 Query: 132 FQLDLMV 138 + L+ Sbjct: 146 RWVTLIA 152 >gi|294852541|ref|ZP_06793214.1| ATPase [Brucella sp. NVSL 07-0026] gi|294821130|gb|EFG38129.1| ATPase [Brucella sp. NVSL 07-0026] Length = 437 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 23 LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 80 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL AA + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N A +R +LT + ++ E + T+++R Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180 Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222 + G L + DEA + + G R A Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209 >gi|23502083|ref|NP_698210.1| recombination factor protein RarA [Brucella suis 1330] gi|161619161|ref|YP_001593048.1| recombination factor protein RarA [Brucella canis ATCC 23365] gi|254704491|ref|ZP_05166319.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686] gi|260566265|ref|ZP_05836735.1| ATPase [Brucella suis bv. 4 str. 40] gi|261755173|ref|ZP_05998882.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686] gi|23348042|gb|AAN30125.1| ATPase, AAA family [Brucella suis 1330] gi|161335972|gb|ABX62277.1| AAA ATPase central domain protein [Brucella canis ATCC 23365] gi|260155783|gb|EEW90863.1| ATPase [Brucella suis bv. 4 str. 40] gi|261744926|gb|EEY32852.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686] Length = 437 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 23 LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 80 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL AA + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N A +R +LT + ++ E + T+++R Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180 Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222 + G L + DEA + + G R A Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209 >gi|146278540|ref|YP_001168699.1| recombination factor protein RarA [Rhodobacter sphaeroides ATCC 17025] gi|145556781|gb|ABP71394.1| Recombination protein MgsA [Rhodobacter sphaeroides ATCC 17025] Length = 437 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 11/144 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+E GQ + S A + +L ++ GPPG+GKTT+A+++A+E + Sbjct: 24 LRPKALDEVIGQEKVLSPDGPL--GAMLASGSLSSLILWGPPGVGKTTIARLLAKETDLA 81 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F S P + K + A L +LF+DEIHR + ++ P MED + L Sbjct: 82 FVQISAIFTGVPDLRKVFEAARLRRANGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTI-L 140 Query: 137 MVGEGPSARSVKIN---LSRFTLI 157 +VG S ++N +SR +I Sbjct: 141 LVGATTENPSFELNAALMSRAQVI 164 >gi|257094688|ref|YP_003168329.1| AAA ATPase central domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047212|gb|ACV36400.1| AAA ATPase central domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 439 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 12/144 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL E GQ + K A ++ L ++ GPPG+GKTTLA+++A + Sbjct: 19 LRPRTLAEVIGQTHLLAPGKPLATAFQS--GQLHSMILWGPPGVGKTTLARLMADAFDAD 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V + D+ A + E R +LF+DE+HR + ++ P +E L Sbjct: 77 FMALSA-VFSGVKDIRAAVARAETTRALSGRRTILFVDEVHRFNKAQQDAFLPYVEGGLL 135 Query: 135 DLM--VGEGPSARSVKINLSRFTL 156 + E PS LSR ++ Sbjct: 136 TFVGATTENPSFEVNSALLSRASV 159 >gi|71897620|ref|ZP_00679865.1| AAA ATPase, central region [Xylella fastidiosa Ann-1] gi|71732523|gb|EAO34576.1| AAA ATPase, central region [Xylella fastidiosa Ann-1] Length = 455 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV---LFVGPPGLGKTTLAQVVAREL 78 +RPRTL E GQ + + A RA A HV + GPPG GKTTL+ ++A + Sbjct: 27 MRPRTLHEMVGQKRLLAP-----DRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHYI 81 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FRS S P + + AA + R VLF+DE+HR + + ++ P +E Sbjct: 82 DAEFRSVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGS 141 Query: 134 LDLMVGEGPSARSVKIN 150 + + VG S ++N Sbjct: 142 I-IFVGATTENPSFELN 157 >gi|319426382|gb|ADV54456.1| AAA ATPase central domain protein [Shewanella putrefaciens 200] Length = 443 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 41/265 (15%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR++ E+ GQ L+ +EA +A + ++ GPPG GKTTLA+++A+ Sbjct: 19 MRPRSIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAQYS 73 Query: 79 GVNFRS----TSG--PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 + TSG + A A+ + R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISAVTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNKSQQDAFLPFIEDG 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI- 191 + + +G S +IN + + RV L+ RL+ EI + T Sbjct: 134 TV-IFIGATTENPSFEIN----NALLSRARVYLIK-----------RLSNDEIAHIVTQA 177 Query: 192 ---VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 +RG L L + + ++A G R A LL + D V+ T T E+ Sbjct: 178 LADTERGLGLRQLEMPENVLIKLAQLCDGDARKALNLLELMSDM--VSDNDTFTHEM--- 232 Query: 249 ALLRLAIDKM-GFDQLDLRYLTMIA 272 L+++A ++ GFD+ ++ +I+ Sbjct: 233 -LVQVAGHQVAGFDKNGDQFYDLIS 256 >gi|299532556|ref|ZP_07045946.1| recombination factor protein RarA [Comamonas testosteroni S44] gi|298719503|gb|EFI60470.1| recombination factor protein RarA [Comamonas testosteroni S44] Length = 446 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 83/327 (25%), Positives = 133/327 (40%), Gaps = 60/327 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL E GQ L++ E+ + + + GPPG+GKTT+A+++A Sbjct: 21 LRPHTLAEVIGQQHVLGEGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMADAF 75 Query: 79 GVNFRSTSGPVIAKAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F S S V+ D+ AA L+ R ++F+DE+HR + ++ P +E Sbjct: 76 DAQFISISA-VLGGVKDIREAVEQAQAAQSGLLQQRTIVFVDEVHRFNKSQQDAFLPHVE 134 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDL 188 FT I ATT + + L R + + L +DL Sbjct: 135 S--------------------GLFTFIGATTENPSFEVNSALLSRAAVYV-LQSLTPDDL 173 Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 K IV + + + A+ DEA + + G R L + AE A ++IT D Sbjct: 174 KQIVAKAQAIQAIPAIEDEALERLIAYADGDARRLLNTLETLSITAEQAGVQSIT----D 229 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 A LL++ ++M R GG +TISA R + D + + Sbjct: 230 AWLLKVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWFCRM 276 Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332 PR R ++ +AW+ +G+ P Sbjct: 277 LDGGADPRYLARRIVRMAWEDIGLADP 303 >gi|326803422|ref|YP_004321240.1| ATPase, AAA family [Aerococcus urinae ACS-120-V-Col10a] gi|326651019|gb|AEA01202.1| ATPase, AAA family [Aerococcus urinae ACS-120-V-Col10a] Length = 424 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 20/138 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TLEE GQ + K+ KA+ L ++ GPPG+GKT++A +A ++ Sbjct: 11 MRPKTLEEVVGQGHLVGSGKIIWRMVKAKQ--LRSMILYGPPGIGKTSIASAIAGSTKLS 68 Query: 82 FRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 FR + V+A+A +L +L +DEIHRL ++ L P +E Sbjct: 69 FRQLNAATDNKKALQEVVAEAKFSGSL--------ILMLDEIHRLDKTKQDFLLPHLESG 120 Query: 133 QLDLMVGEGPSARSVKIN 150 L +++G + IN Sbjct: 121 LL-ILIGATTENPYININ 137 >gi|17987067|ref|NP_539701.1| recombination factor protein RarA [Brucella melitensis bv. 1 str. 16M] gi|17982724|gb|AAL51965.1| atpase associated with chromosome architecture/replication [Brucella melitensis bv. 1 str. 16M] Length = 457 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 43 LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 100 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL AA + R +LF+DEIHR + ++ P MED + Sbjct: 101 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 158 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N A +R +LT + ++ E + T+++R Sbjct: 159 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 200 Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222 + G L + DEA + + G R A Sbjct: 201 EEQEGQALPLDDEARASLIRMADGDGRAA 229 >gi|62290117|ref|YP_221910.1| recombination factor protein RarA [Brucella abortus bv. 1 str. 9-941] gi|82700040|ref|YP_414614.1| recombination factor protein RarA [Brucella melitensis biovar Abortus 2308] gi|189024355|ref|YP_001935123.1| recombination factor protein RarA [Brucella abortus S19] gi|254689426|ref|ZP_05152680.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870] gi|254693911|ref|ZP_05155739.1| recombination factor protein RarA [Brucella abortus bv. 3 str. Tulya] gi|254697561|ref|ZP_05159389.1| recombination factor protein RarA [Brucella abortus bv. 2 str. 86/8/59] gi|254730455|ref|ZP_05189033.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292] gi|256257672|ref|ZP_05463208.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68] gi|260546665|ref|ZP_05822404.1| ATPase [Brucella abortus NCTC 8038] gi|260754949|ref|ZP_05867297.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870] gi|260758165|ref|ZP_05870513.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292] gi|260761991|ref|ZP_05874334.1| recombination factor protein RarA [Brucella abortus bv. 2 str. 86/8/59] gi|260883958|ref|ZP_05895572.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68] gi|261214202|ref|ZP_05928483.1| recombination factor protein RarA [Brucella abortus bv. 3 str. Tulya] gi|297248512|ref|ZP_06932230.1| recombination factor protein RarA [Brucella abortus bv. 5 str. B3196] gi|62196249|gb|AAX74549.1| ATPase, AAA family [Brucella abortus bv. 1 str. 9-941] gi|82616141|emb|CAJ11184.1| Shikimate kinase:Replication factor C conserved domain:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA ATPase, central r [Brucella melitensis biovar Abortus 2308] gi|189019927|gb|ACD72649.1| ATPase, AAA family [Brucella abortus S19] gi|260095715|gb|EEW79592.1| ATPase [Brucella abortus NCTC 8038] gi|260668483|gb|EEX55423.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292] gi|260672423|gb|EEX59244.1| recombination factor protein RarA [Brucella abortus bv. 2 str. 86/8/59] gi|260675057|gb|EEX61878.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870] gi|260873486|gb|EEX80555.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68] gi|260915809|gb|EEX82670.1| recombination factor protein RarA [Brucella abortus bv. 3 str. Tulya] gi|297175681|gb|EFH35028.1| recombination factor protein RarA [Brucella abortus bv. 5 str. B3196] Length = 437 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 23 LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 80 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL AA + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N A +R +LT + ++ E + T+++R Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180 Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222 + G L + DEA + + G R A Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209 >gi|262202249|ref|YP_003273457.1| ATPase AAA [Gordonia bronchialis DSM 43247] gi|262085596|gb|ACY21564.1| AAA ATPase central domain protein [Gordonia bronchialis DSM 43247] Length = 460 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 19/144 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP++L+E GQ + A S L+ I + A + VL GPPG GKTT+A +++R Sbjct: 33 MRPQSLDEIVGQQHLLGAGSPLRRLISGSGAAS-----VLLYGPPGTGKTTMASLISRAT 87 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A ++ A++ R VLFIDE+HR S ++ L A+E+ Sbjct: 88 GGRFEALSA-LSAGVKEVRAVIDIARRRLVEGQQTVLFIDEVHRFSKTQQDALLDAVEN- 145 Query: 133 QLDLMVG---EGPSARSVKINLSR 153 ++ L+V E PS V LSR Sbjct: 146 RIVLLVAATTENPSFSVVAPLLSR 169 >gi|21113093|gb|AAM41265.1| ATPase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573854|gb|AAY49264.1| ATPase [Xanthomonas campestris pv. campestris str. 8004] Length = 428 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + A S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 1 MRPRTLDEMVGQKRLLAADSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 55 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F++ S V++ D+ +L R VLF+DE+HR + ++ P +E Sbjct: 56 DAEFKAISA-VLSGLPDVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQQDAFLPHIERG 114 Query: 133 QLDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 115 TI-LFVGATTENPSFELN 131 >gi|24373860|ref|NP_717903.1| recombination factor protein RarA [Shewanella oneidensis MR-1] gi|24348271|gb|AAN55347.1|AE015672_3 ATPase, AAA family [Shewanella oneidensis MR-1] Length = 445 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 35/262 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT+ E+ GQ L+ +EA +A + ++ GPPG GKTTLA+++A Sbjct: 21 MRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 75 Query: 79 GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + D+ A+ + R +LF+DE+HR + ++ P +ED Sbjct: 76 NAHVERISA-VTSGVKDIRGAIEQAQAIAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIED 134 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + + +G S +IN + + RV L+ QD + I Sbjct: 135 GTV-IFIGATTENPSFEIN----NALLSRARVYLIKRLSQDEI-------VHIITQALAD 182 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 +RG L + + ++A G R A LL + D VA T T E+ L+ Sbjct: 183 TERGLGQRALNMPTDVLNKLAQLCDGDARKALNLLELMSDM--VADGGTFTTEM----LV 236 Query: 252 RLAIDKM-GFDQLDLRYLTMIA 272 ++A ++ GFD+ ++ +I+ Sbjct: 237 QVAGHQVAGFDKNGDQFYDLIS 258 >gi|229111872|ref|ZP_04241418.1| hypothetical protein bcere0018_41160 [Bacillus cereus Rock1-15] gi|229146970|ref|ZP_04275334.1| hypothetical protein bcere0012_41090 [Bacillus cereus BDRD-ST24] gi|228636569|gb|EEK93035.1| hypothetical protein bcere0012_41090 [Bacillus cereus BDRD-ST24] gi|228671628|gb|EEL26926.1| hypothetical protein bcere0018_41160 [Bacillus cereus Rock1-15] Length = 476 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 87/350 (24%), Positives = 137/350 (39%), Gaps = 65/350 (18%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++R+ +L V + +RP ++E GQ K+ +A ++ G Sbjct: 37 IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119 PPG GKT++A +A G FR + V D+ ++ + VL +DE+HRL Sbjct: 95 PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178 ++ L P +E L TLI ATT +NP I Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188 Query: 179 RLNFYEI-----EDLKTIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 R +E+ ED+ ++R G + VTDEA A S G R A L Sbjct: 189 RCQIFELHALTEEDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNAL 248 Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282 + F A IT EIA+ L + + DK G D+ L+ ++ G V Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306 Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 A+ L +I+ G +Q GR L+ +A++ +G+ P Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340 >gi|332185004|ref|ZP_08386753.1| ATPase associated with various cellular activities family protein [Sphingomonas sp. S17] gi|332014728|gb|EGI56784.1| ATPase associated with various cellular activities family protein [Sphingomonas sp. S17] Length = 447 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP LE+ GQ E A R A L ++ GPPG GKTT+A+++A E+ Sbjct: 27 LRPERLEDVVGQDHLTGP-----EGAIGRMVAAGRLSSMILWGPPGTGKTTIARLLAAEV 81 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F + S V + DL + D R +LF+DEIHR + ++ P +ED Sbjct: 82 GLRFAAISA-VFSGVADLKKVFAEARDHARAGQRTLLFVDEIHRFNRAQQDGFLPFVEDG 140 Query: 133 QLDLM--VGEGPS 143 + L+ E PS Sbjct: 141 TVTLVGATTENPS 153 >gi|254786027|ref|YP_003073456.1| recombination factor protein RarA [Teredinibacter turnerae T7901] gi|237686731|gb|ACR13995.1| ATPase, AAA family [Teredinibacter turnerae T7901] Length = 447 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 21/141 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVAR 76 LRPR L+E+ GQ + + A K +A+ H ++ GPPG+GKT+LA+++A Sbjct: 22 LRPRNLDEYLGQ-------EHLLGAGKPLRQAIAHGQIHSMILWGPPGIGKTSLARLLAN 74 Query: 77 ELGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 E F S S V+A D+ + +LF+DE+HR + ++ P + Sbjct: 75 EANAFFLSISA-VLAGVKDIRDAVQQARQQQQAYGRKTILFVDEVHRFNKSQQDAFLPYV 133 Query: 130 EDFQLDLMVGEGPSARSVKIN 150 ED + L VG S ++N Sbjct: 134 EDGTI-LFVGATTENPSFEVN 153 >gi|298346857|ref|YP_003719544.1| crossover junction endodeoxyribonuclease ATPase [Mobiluncus curtisii ATCC 43063] gi|315655402|ref|ZP_07908302.1| replication-associated recombination protein A [Mobiluncus curtisii ATCC 51333] gi|298236918|gb|ADI68050.1| crossover junction endodeoxyribonuclease ATPase [Mobiluncus curtisii ATCC 43063] gi|315490342|gb|EFU79967.1| replication-associated recombination protein A [Mobiluncus curtisii ATCC 51333] Length = 445 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 8/117 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR +EE GQ + + E V+ GPPG GKTTLA +VA+ G + Sbjct: 27 MRPRNVEELVGQSHLLAPNSPLQRLLRGDTEMTSSVILYGPPGTGKTTLAYLVAQAGGRD 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 + S + A ++ ++ + R +LF+DE+HR S ++ L PA+E+ Sbjct: 87 YAQLSA-INAGVKEVREVINAAKQRLSLSGQETILFLDEVHRFSKSQQDSLLPAVEN 142 >gi|224501546|ref|ZP_03669853.1| recombination factor protein RarA [Listeria monocytogenes FSL R2-561] Length = 425 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|148559570|ref|YP_001259126.1| recombination factor protein RarA [Brucella ovis ATCC 25840] gi|163843471|ref|YP_001627875.1| recombination factor protein RarA [Brucella suis ATCC 23445] gi|225852702|ref|YP_002732935.1| recombination factor protein RarA [Brucella melitensis ATCC 23457] gi|254701946|ref|ZP_05163774.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513] gi|254706613|ref|ZP_05168441.1| recombination factor protein RarA [Brucella pinnipedialis M163/99/10] gi|254710277|ref|ZP_05172088.1| recombination factor protein RarA [Brucella pinnipedialis B2/94] gi|256031771|ref|ZP_05445385.1| recombination factor protein RarA [Brucella pinnipedialis M292/94/1] gi|256061286|ref|ZP_05451436.1| recombination factor protein RarA [Brucella neotomae 5K33] gi|256113760|ref|ZP_05454564.1| recombination factor protein RarA [Brucella melitensis bv. 3 str. Ether] gi|256159941|ref|ZP_05457659.1| recombination factor protein RarA [Brucella ceti M490/95/1] gi|256255172|ref|ZP_05460708.1| recombination factor protein RarA [Brucella ceti B1/94] gi|256263807|ref|ZP_05466339.1| ATPase [Brucella melitensis bv. 2 str. 63/9] gi|256369630|ref|YP_003107140.1| ATPase, AAA family [Brucella microti CCM 4915] gi|260168905|ref|ZP_05755716.1| recombination factor protein RarA [Brucella sp. F5/99] gi|261222368|ref|ZP_05936649.1| recombination factor protein RarA [Brucella ceti B1/94] gi|261314073|ref|ZP_05953270.1| recombination factor protein RarA [Brucella pinnipedialis M163/99/10] gi|261317839|ref|ZP_05957036.1| recombination factor protein RarA [Brucella pinnipedialis B2/94] gi|261325293|ref|ZP_05964490.1| recombination factor protein RarA [Brucella neotomae 5K33] gi|261752514|ref|ZP_05996223.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513] gi|261758397|ref|ZP_06002106.1| ATPase [Brucella sp. F5/99] gi|265988869|ref|ZP_06101426.1| recombination factor protein RarA [Brucella pinnipedialis M292/94/1] gi|265995120|ref|ZP_06107677.1| recombination factor protein RarA [Brucella melitensis bv. 3 str. Ether] gi|265998333|ref|ZP_06110890.1| recombination factor protein RarA [Brucella ceti M490/95/1] gi|148370827|gb|ABQ60806.1| ATPase, AAA family [Brucella ovis ATCC 25840] gi|163674194|gb|ABY38305.1| AAA ATPase central domain protein [Brucella suis ATCC 23445] gi|225641067|gb|ACO00981.1| AAA ATPase central domain protein [Brucella melitensis ATCC 23457] gi|255999792|gb|ACU48191.1| ATPase, AAA family [Brucella microti CCM 4915] gi|260920952|gb|EEX87605.1| recombination factor protein RarA [Brucella ceti B1/94] gi|261297062|gb|EEY00559.1| recombination factor protein RarA [Brucella pinnipedialis B2/94] gi|261301273|gb|EEY04770.1| recombination factor protein RarA [Brucella neotomae 5K33] gi|261303099|gb|EEY06596.1| recombination factor protein RarA [Brucella pinnipedialis M163/99/10] gi|261738381|gb|EEY26377.1| ATPase [Brucella sp. F5/99] gi|261742267|gb|EEY30193.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513] gi|262552801|gb|EEZ08791.1| recombination factor protein RarA [Brucella ceti M490/95/1] gi|262766233|gb|EEZ12022.1| recombination factor protein RarA [Brucella melitensis bv. 3 str. Ether] gi|263093935|gb|EEZ17869.1| ATPase [Brucella melitensis bv. 2 str. 63/9] gi|264661066|gb|EEZ31327.1| recombination factor protein RarA [Brucella pinnipedialis M292/94/1] gi|326538935|gb|ADZ87150.1| AAA ATPase central domain protein [Brucella melitensis M5-90] Length = 437 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 23 LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 80 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL AA + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N A +R +LT + ++ E + T+++R Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180 Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222 + G L + DEA + + G R A Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209 >gi|16803554|ref|NP_465039.1| recombination factor protein RarA [Listeria monocytogenes EGD-e] gi|16410943|emb|CAC99592.1| lmo1514 [Listeria monocytogenes EGD-e] Length = 425 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|254714274|ref|ZP_05176085.1| recombination factor protein RarA [Brucella ceti M644/93/1] gi|254717711|ref|ZP_05179522.1| recombination factor protein RarA [Brucella ceti M13/05/1] gi|261219553|ref|ZP_05933834.1| recombination factor protein RarA [Brucella ceti M13/05/1] gi|261322048|ref|ZP_05961245.1| recombination factor protein RarA [Brucella ceti M644/93/1] gi|260924642|gb|EEX91210.1| recombination factor protein RarA [Brucella ceti M13/05/1] gi|261294738|gb|EEX98234.1| recombination factor protein RarA [Brucella ceti M644/93/1] Length = 437 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 23 LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 80 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL AA + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N A +R +LT + ++ E + T+++R Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180 Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222 + G L + DEA + + G R A Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209 >gi|254423935|ref|ZP_05037653.1| ATPase, AAA family protein [Synechococcus sp. PCC 7335] gi|196191424|gb|EDX86388.1| ATPase, AAA family protein [Synechococcus sp. PCC 7335] Length = 742 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L EF GQ ++ A +A + L ++F GPPG GKTTLA+V+A Sbjct: 22 MRPRSLIEFIGQDAIVGPGRLLRRAIEA--DQLSSLIFYGPPGTGKTTLAKVIANTTMAQ 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + + V+ D+ + + R +LF+DE+HR + ++ L P +E+ Sbjct: 80 FVAINA-VLGGVKDIRFAIEQAQTHRGQFGRRTILFVDEVHRFNKAQQDALLPWVEN 135 >gi|300778766|ref|ZP_07088624.1| replication-associated recombination protein A [Chryseobacterium gleum ATCC 35910] gi|300504276|gb|EFK35416.1| replication-associated recombination protein A [Chryseobacterium gleum ATCC 35910] Length = 425 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ + ++ IE L+ ++F GPPG GKTTLA++++ + Sbjct: 11 LRPKTLNDVLGQEHLTGDKGTIRKMIEN-----NTLNSLIFWGPPGTGKTTLAEIISEQS 65 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 G F S V + D+ ++ + + ++ +LFIDEIHR + ++ L A+E Sbjct: 66 GRKFYKLSA-VSSGVKDVRDVIEDAKKQNLFSGKSPILFIDEIHRFNKSQQDSLLHAVEK 124 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 125 GWIVLIGATTENPSFEVVSALLSR 148 >gi|328543386|ref|YP_004303495.1| ATPase, AAA family protein [polymorphum gilvum SL003B-26A1] gi|326413131|gb|ADZ70194.1| ATPase, AAA family protein [Polymorphum gilvum SL003B-26A1] Length = 436 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR LE+ GQ K R L ++F GPPG GKTT+A+++A + Sbjct: 22 LRPRRLEDVVGQDHLLGPEGTLSRMLKTRT--LGSLIFWGPPGTGKTTIARLLADATDLA 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + ++ P MED + Sbjct: 80 FEQISA-IFSGVADLKKVFETARARRMGGRGTLLFVDEIHRFNRAQQDSFLPVMEDGTIT 138 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 139 LVGATTENPS 148 >gi|293192677|ref|ZP_06609631.1| ATPase, AAA family [Actinomyces odontolyticus F0309] gi|292820184|gb|EFF79181.1| ATPase, AAA family [Actinomyces odontolyticus F0309] Length = 447 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 11/133 (8%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+E GQ L+ + + A+ V+ GPPG GKTTLA ++AR Sbjct: 27 MRPTTLDEVVGQSHLLGEGAPLRRLLSPGSSDGVAVSSVVLWGPPGTGKTTLAYLIARAS 86 Query: 79 GVNF------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F S V D L + +LF+DE+HR S ++ L PA+E+ Sbjct: 87 GRRFVELSAVSSGVSDVRRVVDDARRTLASGGQETILFVDEVHRFSKSQQDSLLPAVENR 146 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 147 WVVLVAATTENPS 159 >gi|237815625|ref|ZP_04594622.1| recombination factor protein RarA [Brucella abortus str. 2308 A] gi|237788923|gb|EEP63134.1| recombination factor protein RarA [Brucella abortus str. 2308 A] Length = 457 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 43 LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 100 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL AA + R +LF+DEIHR + ++ P MED + Sbjct: 101 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 158 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N A +R +LT + ++ E + T+++R Sbjct: 159 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 200 Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222 + G L + DEA + + G R A Sbjct: 201 EEQEGQALPLDDEARASLIRMADGDGRAA 229 >gi|332967839|gb|EGK06938.1| replication-associated recombination protein A [Kingella kingae ATCC 23330] Length = 435 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 9/116 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL+E GQ K + A A E +L+ G PG+GKTTLA++VA+ G Sbjct: 17 LRPRTLDEVIGQEHLTGEGKP-LRVALASGEPHSMLLW-GSPGIGKTTLARIVAQGFGAQ 74 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S V + D+ + E R +LF+DE+HR + ++ P +E+ Sbjct: 75 FLPLSA-VFSGVKDIREAIQKAEIAWQHGQRTILFVDEVHRFNKSQQDAFLPYVEN 129 >gi|218291271|ref|ZP_03495247.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218238819|gb|EED06031.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 447 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 15/139 (10%) Query: 2 MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHV 57 MD L S + ++ +A ++ +RPR+L+E G L+ IE + L + Sbjct: 1 MDLFSLASEHEAEREAPLAYRMRPRSLDEMVGHENLVGRDGILRRMIERDR-----LMSI 55 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111 + GPPG GKTT+A+V+AR+ F + A A+ T E+RD V+F+ Sbjct: 56 ILYGPPGTGKTTIAEVIARQTKARFIPLNAVTSGIADVRKAVETAREERDLYGRRTVVFL 115 Query: 112 DEIHRLSIIVEEILYPAME 130 DEIHR + ++ L P +E Sbjct: 116 DEIHRFNKNQQDALLPHVE 134 >gi|154509637|ref|ZP_02045279.1| hypothetical protein ACTODO_02170 [Actinomyces odontolyticus ATCC 17982] gi|153799271|gb|EDN81691.1| hypothetical protein ACTODO_02170 [Actinomyces odontolyticus ATCC 17982] Length = 563 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 22/171 (12%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ L+ IEA + + ++F GPPG+GKTTLA+V+AR Sbjct: 24 MRPTSLDEVVGQSHQIGPGKALRSMIEADRTPS-----MIFWGPPGVGKTTLARVIARHT 78 Query: 79 GVNF----RSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +F TSG I + A ++ R ++F+DEIHR + ++ P +E Sbjct: 79 HASFIDFSAVTSGIKEIREVMKQADAQASMGRRTIVFVDEIHRFNKAQQDAFLPFVEKGS 138 Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176 + +++G S +IN LSR F L T V L+ L+D G Sbjct: 139 I-ILIGATTENPSFEINNALLSRCKVFVLHGLTEEDLVDLMRRALKDPRGF 188 >gi|126461163|ref|YP_001042277.1| recombination factor protein RarA [Rhodobacter sphaeroides ATCC 17029] gi|221638141|ref|YP_002524403.1| recombination factor protein RarA [Rhodobacter sphaeroides KD131] gi|126102827|gb|ABN75505.1| Recombination protein MgsA [Rhodobacter sphaeroides ATCC 17029] gi|221158922|gb|ACL99901.1| Recombination protein MgsA [Rhodobacter sphaeroides KD131] Length = 437 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 11/144 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L E GQ + S A + +L ++ GPPG+GKTT+A+++A+E + Sbjct: 24 LRPKSLAEVIGQGKVLSPDGPL--GAMLASGSLSSLILWGPPGVGKTTIARLLAKETDLA 81 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F S P + K + A L +LF+DEIHR + ++ P MED + L Sbjct: 82 FVQISAIFTGVPDLRKVFEAAKLRRANGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTI-L 140 Query: 137 MVGEGPSARSVKIN---LSRFTLI 157 +VG S ++N +SR +I Sbjct: 141 LVGATTENPSFELNAALMSRAQVI 164 >gi|332560168|ref|ZP_08414490.1| recombination factor protein RarA [Rhodobacter sphaeroides WS8N] gi|332277880|gb|EGJ23195.1| recombination factor protein RarA [Rhodobacter sphaeroides WS8N] Length = 437 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 11/144 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L E GQ + S A + +L ++ GPPG+GKTT+A+++A+E + Sbjct: 24 LRPKSLAEVIGQGKVLSPDGPL--GAMLASGSLSSLILWGPPGVGKTTIARLLAKETDLA 81 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F S P + K + A L +LF+DEIHR + ++ P MED + L Sbjct: 82 FVQISAIFTGVPDLRKVFEAAKLRRANGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTI-L 140 Query: 137 MVGEGPSARSVKIN---LSRFTLI 157 +VG S ++N +SR +I Sbjct: 141 LVGATTENPSFELNAALMSRAQVI 164 >gi|167384792|ref|XP_001737100.1| werner helicase interacting protein [Entamoeba dispar SAW760] gi|165900271|gb|EDR26634.1| werner helicase interacting protein, putative [Entamoeba dispar SAW760] Length = 428 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 33/253 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ +EE GQ++ ++ I +D ++F GPPG GKTTL +++ +F Sbjct: 34 RPQKIEEVVGQLKTRDDIIHQITVLGK----IDSMIFFGPPGCGKTTLCKLIKGYFEKSF 89 Query: 83 RSTSGPVIAK--AGDLAALLTNLED----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 G I DL +++ ++ + ++FIDEIH +S IV+E+L +++ + L Sbjct: 90 IELDGSSINTKMTKDLKSIIKKNKETTHSQTIIFIDEIHCISPIVQELLIDLLKEKTIHL 149 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-- 194 + G + + LS+ L+ F I L LK I++R Sbjct: 150 I---GTTTQVPSFCLSKELLL----------------FVRVIMLERLSETSLKEIIKRAI 190 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR-- 252 A+ + V+DE +I S G R+A L R+ AE+ I+ + + + Sbjct: 191 NAEYSKYIVSDEIINKIIDSSDGDGRMALNNLERLIQCAELEKVNEISIKFVHEIIGKKS 250 Query: 253 LAIDKMGFDQLDL 265 L DK G + +L Sbjct: 251 LNYDKRGDEHYNL 263 >gi|161621803|ref|YP_016214.2| recombination factor protein RarA [Mycoplasma mobile 163K] Length = 406 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 19/168 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE+ GQ K IE + + +F G G+GKTT A V+A+E + Sbjct: 8 IRPERLEDIVGQSHLIELFKAIIEK-----QEMSSFIFYGESGIGKTTAATVIAKEKQES 62 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + P I +L L L +L IDE+HRL+ +EIL +ED ++ L Sbjct: 63 Y-DVFNPTIHSKKEL---LEKLAINKILIIDELHRLNKDKQEILLSYLEDDKIILYATTT 118 Query: 142 --------PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 PS RS ++ + RF ++ T L N ++ ++ + I++N Sbjct: 119 ENPYFKIIPSLRS-RLKILRFNKLSETEIFQGLKNIIE-KYKLKIKIN 164 >gi|315656685|ref|ZP_07909572.1| replication-associated recombination protein A [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492640|gb|EFU82244.1| replication-associated recombination protein A [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 445 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 8/117 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR +EE GQ + + E V+ GPPG GKTTLA +VA+ G + Sbjct: 27 MRPRNVEELVGQSHLLAPNSPLQRLLRGDTEMTSSVILYGPPGTGKTTLAYLVAQAGGRD 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 + S + A ++ ++ + R +LF+DE+HR S ++ L PA+E+ Sbjct: 87 YAQLSA-INAGVKEVREVINAAKQRLSLSGQETILFLDEVHRFSKSQQDSLLPAVEN 142 >gi|304389438|ref|ZP_07371401.1| replication-associated recombination protein A [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327248|gb|EFL94483.1| replication-associated recombination protein A [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 445 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 8/117 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR +EE GQ + + E V+ GPPG GKTTLA +VA+ G + Sbjct: 27 MRPRNVEELVGQSHLLAPNSPLQRLLRGDTEMTSSVILYGPPGTGKTTLAYLVAQAGGRD 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 + S + A ++ ++ + R +LF+DE+HR S ++ L PA+E+ Sbjct: 87 YAQLSA-INAGVKEVREVINAAKQRLSLSGQETILFLDEVHRFSKSQQDSLLPAVEN 142 >gi|229071908|ref|ZP_04205119.1| hypothetical protein bcere0025_40750 [Bacillus cereus F65185] gi|228711204|gb|EEL63168.1| hypothetical protein bcere0025_40750 [Bacillus cereus F65185] Length = 476 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 89/350 (25%), Positives = 138/350 (39%), Gaps = 65/350 (18%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++R+ +L V + +RP ++E GQ K+ +A ++ G Sbjct: 37 IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119 PPG GKT++A +A G FR + V D+ ++ + VL +DE+HRL Sbjct: 95 PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178 ++ L P +E L TLI ATT +NP I Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188 Query: 179 RLNFYEI----ED-----LKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLL 226 R +E+ ED LK ++ K G + VTDEA A S G R A L Sbjct: 189 RCQIFELHALTEDDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNAL 248 Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282 + F A IT EIA+ L + + DK G D+ L+ ++ G V Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306 Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 A+ L +I+ G +Q GR L+ +A++ +G+ P Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340 >gi|225627677|ref|ZP_03785714.1| recombination factor protein RarA [Brucella ceti str. Cudo] gi|225617682|gb|EEH14727.1| recombination factor protein RarA [Brucella ceti str. Cudo] gi|326409226|gb|ADZ66291.1| recombination factor protein RarA [Brucella melitensis M28] Length = 457 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 43 LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 100 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL AA + R +LF+DEIHR + ++ P MED + Sbjct: 101 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 158 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N A +R +LT + ++ E + T+++R Sbjct: 159 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 200 Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222 + G L + DEA + + G R A Sbjct: 201 EEQEGQALPLDDEARASLIRMADGDGRAA 229 >gi|254828252|ref|ZP_05232939.1| recombination factor protein RarA [Listeria monocytogenes FSL N3-165] gi|258600640|gb|EEW13965.1| recombination factor protein RarA [Listeria monocytogenes FSL N3-165] Length = 427 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|311104419|ref|YP_003977272.1| magnesium chelatase subunit ChlI family protein 1 [Achromobacter xylosoxidans A8] gi|310759108|gb|ADP14557.1| magnesium chelatase, subunit ChlI family protein 1 [Achromobacter xylosoxidans A8] Length = 446 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 33/246 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL + GQ L+V E+ + + ++F GPPG+GKTTLA+++A Sbjct: 22 LRPRTLSDVVGQSHLLGPDKPLRVAFESGRPHS-----MIFWGPPGVGKTTLARLMADGF 76 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED-- 131 F + S + I A +A + R +LF+DE+HR + ++ P +E Sbjct: 77 DAQFIAISAVLGGVKDIRDAVTVAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVESGL 136 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 F E PS LSR + + L DR ++ L Sbjct: 137 FTFIGATTENPSFEVNSALLSRARVYVLQSLTAEELQQLVDR----------AVQALNDG 186 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 ++ G ++ V +A ++A + G R RL+ V AE A A R+ DAA L Sbjct: 187 LEEGERIH---VDADAREQLAAWADGDAR---RLISAVEVVAESAQA--AGRDTVDAAWL 238 Query: 252 RLAIDK 257 +++ + Sbjct: 239 EISLSQ 244 >gi|228954684|ref|ZP_04116707.1| hypothetical protein bthur0006_40530 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229081664|ref|ZP_04214159.1| hypothetical protein bcere0023_42940 [Bacillus cereus Rock4-2] gi|229180675|ref|ZP_04308015.1| hypothetical protein bcere0005_40190 [Bacillus cereus 172560W] gi|228602820|gb|EEK60301.1| hypothetical protein bcere0005_40190 [Bacillus cereus 172560W] gi|228701668|gb|EEL54159.1| hypothetical protein bcere0023_42940 [Bacillus cereus Rock4-2] gi|228805011|gb|EEM51607.1| hypothetical protein bthur0006_40530 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 476 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 89/350 (25%), Positives = 138/350 (39%), Gaps = 65/350 (18%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++R+ +L V + +RP ++E GQ K+ +A ++ G Sbjct: 37 IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119 PPG GKT++A +A G FR + V D+ ++ + VL +DE+HRL Sbjct: 95 PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178 ++ L P +E L TLI ATT +NP I Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188 Query: 179 RLNFYEI----ED-----LKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLL 226 R +E+ ED LK ++ K G + VTDEA A S G R A L Sbjct: 189 RCQIFELHALTEDDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNAL 248 Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282 + F A IT EIA+ L + + DK G D+ L+ ++ G V Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306 Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 A+ L +I+ G +Q GR L+ +A++ +G+ P Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340 >gi|157412429|ref|YP_001483295.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT 9215] gi|157387004|gb|ABV49709.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9215] Length = 429 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 20/142 (14%) Query: 2 MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58 M E L + + SQ + + L LRP+ LE+F GQ + N + +A + + + + Sbjct: 1 MHSENLFT-DYSQVENNAPLADKLRPKNLEDFFGQ-QPILNENSLLRSAILN-DKISNFI 57 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTS---GPVIAKAGDLAALLTNLEDR-------DV 108 F GPPG+GKTTL ++++ N RS V++ +L + N ++R + Sbjct: 58 FSGPPGVGKTTLIEIIS----CNTRSKLIKLNAVLSSVKELRNEIANAKERLINSKRKTI 113 Query: 109 LFIDEIHRLSIIVEEILYPAME 130 LFIDE+HR + + ++ L P++E Sbjct: 114 LFIDEVHRFTAVQQDALLPSIE 135 >gi|229192611|ref|ZP_04319572.1| hypothetical protein bcere0002_42620 [Bacillus cereus ATCC 10876] gi|228590918|gb|EEK48776.1| hypothetical protein bcere0002_42620 [Bacillus cereus ATCC 10876] Length = 476 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 89/350 (25%), Positives = 138/350 (39%), Gaps = 65/350 (18%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++R+ +L V + +RP ++E GQ K+ +A ++ G Sbjct: 37 IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119 PPG GKT++A +A G FR + V D+ ++ + VL +DE+HRL Sbjct: 95 PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178 ++ L P +E L TLI ATT +NP I Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188 Query: 179 RLNFYEI----ED-----LKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLL 226 R +E+ ED LK ++ K G + VTDEA A S G R A L Sbjct: 189 RCQIFELHALTEDDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNAL 248 Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282 + F A IT EIA+ L + + DK G D+ L+ ++ G V Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306 Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 A+ L +I+ G +Q GR L+ +A++ +G+ P Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340 >gi|91793101|ref|YP_562752.1| recombination factor protein RarA [Shewanella denitrificans OS217] gi|91715103|gb|ABE55029.1| Recombination protein MgsA [Shewanella denitrificans OS217] Length = 443 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 17/139 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L E+ GQ L+V +EA +A + +L GPPG GKTTLA+++A Sbjct: 19 MRPRVLSEYIGQSHLLGEGKALRVALEANRAHS-----MLLWGPPGTGKTTLAELIAHYA 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + D+ A + + R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VSSGVKDIRAAIEQAKAVAQSRGQRTLLFVDEVHRFNKSQQDAFLPYIED 132 Query: 132 FQLDLMVGEGPSARSVKIN 150 + + VG S ++N Sbjct: 133 GTV-IFVGATTENPSFELN 150 >gi|83720479|ref|YP_442107.1| recombination factor protein RarA [Burkholderia thailandensis E264] gi|167619051|ref|ZP_02387682.1| recombination factor protein RarA [Burkholderia thailandensis Bt4] gi|257138292|ref|ZP_05586554.1| recombination factor protein RarA [Burkholderia thailandensis E264] gi|83654304|gb|ABC38367.1| ATPase, AAA family protein [Burkholderia thailandensis E264] Length = 436 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 82/326 (25%), Positives = 136/326 (41%), Gaps = 58/326 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ LK+ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLADVIGQTHLLGEGKPLKLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + +D +L+ + Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLTED--------------ELRQL 171 Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 ++R L GLA D+A + + G R LL + + A A TI DAA Sbjct: 172 LKRAQDTALDGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 226 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 + A +TM AR F GG + ISA R + D ++ + Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273 Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332 P+ R ++ +AW+ +G+ P Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299 >gi|256847992|ref|ZP_05553436.1| ATPase [Lactobacillus coleohominis 101-4-CHN] gi|256715052|gb|EEU30029.1| ATPase [Lactobacillus coleohominis 101-4-CHN] Length = 427 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 6/131 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+EE GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 10 MRPRTIEEVVGQQHLVGPGKIIWRMVQAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR+ + K DL ++ + +L +DEIHRL ++ L P +E ++ +++G Sbjct: 68 FRTLNAATDTKK-DLQIVVEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGKI-ILIG 125 Query: 140 EGPSARSVKIN 150 + IN Sbjct: 126 ATTENPYININ 136 >gi|153009313|ref|YP_001370528.1| recombination factor protein RarA [Ochrobactrum anthropi ATCC 49188] gi|151561201|gb|ABS14699.1| AAA ATPase central domain protein [Ochrobactrum anthropi ATCC 49188] Length = 438 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 23 LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLAGETDLA 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKKVFETARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKIN 150 +++G S ++N Sbjct: 139 ILIGATTENPSFELN 153 >gi|121595667|ref|YP_987563.1| recombination factor protein RarA [Acidovorax sp. JS42] gi|120607747|gb|ABM43487.1| Recombination protein MgsA [Acidovorax sp. JS42] Length = 442 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 83/325 (25%), Positives = 134/325 (41%), Gaps = 56/325 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR+L E GQ L++ E+ + + + GPPG+GKTT+A+++A Sbjct: 16 LRPRSLAEVIGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMAEAF 70 Query: 79 GVNFRSTSGPVIAKAGDL--AALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAME 130 F S S V+ D+ A L ++ R ++F+DE+HR + ++ P +E Sbjct: 71 DAQFISISA-VLGGVKDIRDAVQLAESARDGLMQQRTIVFVDEVHRFNKSQQDAFLPHVE 129 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 L VG S ++N + + A + PL +DLK Sbjct: 130 S-GLFTFVGATTENPSFEVNSALLSRAAV-----YVLQPLGS-------------DDLKQ 170 Query: 191 IVQRGAKLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 IV + L L + AA E + + G R RLL + A I R I DA Sbjct: 171 IVAKAQALQALPAIENAALERLIAYADGDAR---RLLNTLETLEVTASQAGIER-IEDAW 226 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309 LL++ ++M R GG +TISA R + D ++++ Sbjct: 227 LLQVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRMLD 273 Query: 310 IQRTPR--GRLLMPIAWQHLGIDIP 332 PR R ++ +AW+ +G+ P Sbjct: 274 GGADPRYMARRIVRMAWEDIGLADP 298 >gi|194333665|ref|YP_002015525.1| recombination factor protein RarA [Prosthecochloris aestuarii DSM 271] gi|194311483|gb|ACF45878.1| AAA ATPase central domain protein [Prosthecochloris aestuarii DSM 271] Length = 454 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL++ GQ V + L+ F+E + L ++F GPPG GKTTLA++ A L Sbjct: 32 VRPQTLDQIAGQRHLVAEGAPLRRFLEEGR-----LPSLIFWGPPGSGKTTLAEICAHWL 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAME 130 F S V A D+ L + R +LFIDEIHR + ++ L A+E Sbjct: 87 DFRFAKLSA-VDAGVKDVRQALEQADKARRIEGQRSLLFIDEIHRFNKAQQDSLLHAIE 144 >gi|189220465|ref|YP_001941105.1| ATPase [Methylacidiphilum infernorum V4] gi|189187323|gb|ACD84508.1| ATPase [Methylacidiphilum infernorum V4] Length = 454 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTLEE GQ + L+ I+A + ++ ++ GPPG GKTTLA+++A++ Sbjct: 26 MRPRTLEELVGQEDILLPGKPLRRLIDADRIQS-----LILYGPPGTGKTTLAEIIAKKT 80 Query: 79 GVNFRSTSGPVIAKAGDL------AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130 +F + V A D+ AAL E + +LFIDEIHR + +++L P +E Sbjct: 81 K-SFFARLNAVEAGVSDIRKVIGQAALRWKKEKKHTLLFIDEIHRFNKSQQDVLLPDLE 138 >gi|152976813|ref|YP_001376330.1| recombination factor protein RarA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025565|gb|ABS23335.1| AAA ATPase central domain protein [Bacillus cytotoxicus NVH 391-98] Length = 428 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 104/263 (39%), Gaps = 47/263 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNISEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193 TLI ATT +NP I R +E+ +D+ T ++ Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILTGLK 160 Query: 194 R--GAKLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 R K GL VTDEA A S G R A L + FA A IT E Sbjct: 161 RALADKEKGLGEYHVTVTDEAIRHFASASGGDMRSAYNALELAVLSSFATDEQAGEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDL 265 IA+ L + + DK G D+ Sbjct: 221 IAEECLQKKSFVHDKDGDAHYDV 243 >gi|227514495|ref|ZP_03944544.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum ATCC 14931] gi|227087181|gb|EEI22493.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum ATCC 14931] Length = 430 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ K+ +AR L ++ GPPG GKT++A +A Sbjct: 9 MRPRTLDEVVGQQHLIGPGKIIWRMVEARM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + +K + A + +L +DEIHRL ++ L P +E ++ +++G Sbjct: 67 FRTLNAATDSKKDLQVVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI-VLIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYIAIN 135 >gi|184154931|ref|YP_001843271.1| recombination factor protein RarA [Lactobacillus fermentum IFO 3956] gi|183226275|dbj|BAG26791.1| ATPase [Lactobacillus fermentum IFO 3956] gi|299782966|gb|ADJ40964.1| ATPase [Lactobacillus fermentum CECT 5716] Length = 430 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ K+ +AR L ++ GPPG GKT++A +A Sbjct: 9 MRPRTLDEVVGQQHLIGPGKIIWRMVEARM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + +K + A + +L +DEIHRL ++ L P +E ++ +++G Sbjct: 67 FRTLNAATDSKKDLQVVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI-VLIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYIAIN 135 >gi|51893539|ref|YP_076230.1| recombination factor protein RarA [Symbiobacterium thermophilum IAM 14863] gi|51857228|dbj|BAD41386.1| ATP/GTP-binding domain protein [Symbiobacterium thermophilum IAM 14863] Length = 438 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 107/251 (42%), Gaps = 40/251 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL+EF GQ + A +A L + GPPG GKTTLA+++A + + Sbjct: 22 MRPQTLDEFVGQEHLVGPGRFLRRALEA--GHLPSCILFGPPGTGKTTLARLMASNVNAH 79 Query: 82 FRS----TSG-PVIAKAGDLA-ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F TSG I + D A A L + V+FIDEIHR ++ L P +ED Sbjct: 80 FEQLNAVTSGVQDIRRIVDEARARLAERGQKTVVFIDEIHRWRKDQQDALLPHVED---- 135 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLKTIVQ 193 TL+ ATT+ L++ PL R I L E + ++ Sbjct: 136 ----------------GLITLVGATTQNPLVSVNAPLVSRTRI-FELKPLSDEHIAHLLD 178 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA---------HAKTITRE 244 R + G + + A R+AG R + E+A +T+T E Sbjct: 179 RALRTPGRGLGNYNATVTPEAMEHLVRMAGGDARAALNALELAVLLTQPDEQGRRTVTLE 238 Query: 245 IADAALLRLAI 255 A+ ALL+ A+ Sbjct: 239 TAEEALLKRAV 249 >gi|66823793|ref|XP_645251.1| hypothetical protein DDB_G0272158 [Dictyostelium discoideum AX4] gi|75009093|sp|Q75JU2|WRIP1_DICDI RecName: Full=ATPase WRNIP1; AltName: Full=Werner helicase-interacting protein 1 homolog gi|60473285|gb|EAL71231.1| hypothetical protein DDB_G0272158 [Dictyostelium discoideum AX4] Length = 876 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 11/116 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA--RAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP L +F GQ +L V K ++ L + GPPG GKTTLAQ+VA + Sbjct: 201 MRPTELSDFIGQ----ESLLVGDPIVKKLFQSPELPSFILYGPPGCGKTTLAQIVASKSN 256 Query: 80 VNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 N + S I + D A + +LFIDEIHR + + +++L PA+E Sbjct: 257 YNINALSAVGSGVKDIKEVIDKARNTLQFGKKTILFIDEIHRYNKLQQDVLLPAIE 312 >gi|254829727|ref|ZP_05234382.1| recombination factor protein RarA [Listeria monocytogenes 10403S] Length = 427 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ KA+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKALDEIVGQTHLVGKDKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K ++ A + +L +DE+HRL ++ L P +E + +++G Sbjct: 68 FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126 Query: 141 GPSARSVKIN 150 S + IN Sbjct: 127 TTSNPYIAIN 136 >gi|34483337|emb|CAE10335.1| conserved hypothetical protein [Wolinella succinogenes] Length = 365 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---RDVL 109 +L H F GPPG GKT+ A+++A+ L F + K +L + L ++ + +L Sbjct: 6 SLPHAFFYGPPGTGKTSAAKIIAKRLDRPFALFNATTF-KIEELRSYLKEYKNALLKPLL 64 Query: 110 FIDEIHRLSIIVEEILYPAMEDFQ 133 FIDE+HRLS +E+L P ME+ + Sbjct: 65 FIDEVHRLSKNQQEVLLPLMENHE 88 >gi|260663310|ref|ZP_05864201.1| ATPase [Lactobacillus fermentum 28-3-CHN] gi|260552162|gb|EEX25214.1| ATPase [Lactobacillus fermentum 28-3-CHN] Length = 430 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ K+ +AR L ++ GPPG GKT++A +A Sbjct: 9 MRPRTLDEVVGQQHLIGPGKIIWRMVEARM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + +K + A + +L +DEIHRL ++ L P +E ++ +++G Sbjct: 67 FRTLNAATDSKKDLQVVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI-VLIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYIAIN 135 >gi|225568918|ref|ZP_03777943.1| hypothetical protein CLOHYLEM_04997 [Clostridium hylemonae DSM 15053] gi|225162417|gb|EEG75036.1| hypothetical protein CLOHYLEM_04997 [Clostridium hylemonae DSM 15053] Length = 445 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 22/158 (13%) Query: 20 SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S LRP +L++F GQ L+ I+ + + ++F GPPG+GKTTLA+++AR Sbjct: 19 SRLRPESLDDFAGQEHLLGPGRLLRQLIDK-----DQISSMIFWGPPGVGKTTLARIIAR 73 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 +F S V + ++ +++ E R ++F+DEIHR + ++ P +E Sbjct: 74 RTKADFIDFSA-VTSGIKEIKEVMSKAEKDRHAGIRTLVFVDEIHRFNKAQQDAFLPYVE 132 Query: 131 DFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR 162 + +++G S +IN LSR F L A T + Sbjct: 133 KGSI-ILIGATTENPSFEINAALLSRCKVFVLQALTEK 169 >gi|194468283|ref|ZP_03074269.1| AAA ATPase central domain protein [Lactobacillus reuteri 100-23] gi|194453136|gb|EDX42034.1| AAA ATPase central domain protein [Lactobacillus reuteri 100-23] Length = 434 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ K+ KA+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRTLDEVVGQQHLVGPGKIISRMVKAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +++G Sbjct: 67 FRKLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKGKQDFLLPHLENGRI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYISIN 135 >gi|325271660|ref|ZP_08138160.1| recombination factor protein RarA [Pseudomonas sp. TJI-51] gi|324103212|gb|EGC00559.1| recombination factor protein RarA [Pseudomonas sp. TJI-51] Length = 279 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 62/126 (49%), Gaps = 10/126 (7%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LLRP+ L+EF GQ K A +A + L + GPPG+GKTTL ++ A Sbjct: 4 LLRPKALDEFVGQRHLLGPGKPLRLAFEA--DNLHSFILWGPPGVGKTTLGRLAASATDS 61 Query: 81 NFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S V+A D+ A L N VLF+DEIHR + ++ L P +E Sbjct: 62 RFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVESGL 120 Query: 134 LDLMVG 139 L L+ G Sbjct: 121 LTLVGG 126 >gi|311280198|ref|YP_003942429.1| AAA ATPase central domain-containing protein [Enterobacter cloacae SCF1] gi|308749393|gb|ADO49145.1| AAA ATPase central domain protein [Enterobacter cloacae SCF1] Length = 447 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL ++ GQ + K A +A L ++ GPPG GKTTLA+V+AR + Sbjct: 20 MRPETLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYASAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A N R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|77360654|ref|YP_340229.1| recombination factor protein RarA [Pseudoalteromonas haloplanktis TAC125] gi|76875565|emb|CAI86786.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Pseudoalteromonas haloplanktis TAC125] Length = 447 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 16/133 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP TL+E+ GQ S K +A A R +L + GPPG+GKTTLAQ++A Sbjct: 19 MRPTTLDEYIGQQHLLSADKPLHQAIVAGRCHSL---ILWGPPGVGKTTLAQIIANHADA 75 Query: 81 NFRSTSGPVIAKAGDLAALLT----NLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 S V A D+ +T NL+ R ++F+DE+HR + ++ P +ED Sbjct: 76 ALIQMSA-VTAGVKDIRDSVTQARENLQSRGQRTLMFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLMVG---EGPS 143 + VG E PS Sbjct: 135 F-IFVGATTENPS 146 >gi|257439846|ref|ZP_05615601.1| replication-associated recombination protein A [Faecalibacterium prausnitzii A2-165] gi|257197755|gb|EEU96039.1| replication-associated recombination protein A [Faecalibacterium prausnitzii A2-165] Length = 424 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 24/177 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL E GQ + +VF IE+ + + +++F GP G GKTT+A+++A Sbjct: 9 MRPKTLAEVCGQQHLLAPGRVFRRTIESGR-----IPNMIFYGPSGTGKTTVARIIAENS 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133 G+ +G GD+ A+L ++ +L++DEI L+ ++ L +ED Sbjct: 64 GMTLHKLNGTSCG-TGDIKAVLKDIGTLAGAGGILLYLDEIQYLNKKQQQSLLECIEDGT 122 Query: 134 LDLMVG--EGPSARSVKINLSRFT------LIAATTRVGLLT--NPLQDRFGIPIRL 180 + L+ E P LSR T L AA GL L + G PIR+ Sbjct: 123 VTLIASTTENPYFYIYNALLSRCTVFEFKSLTAADVEQGLRNALKKLSESEGTPIRM 179 >gi|238883747|gb|EEQ47385.1| conserved hypothetical protein [Candida albicans WO-1] Length = 552 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 104/236 (44%), Gaps = 38/236 (16%) Query: 22 LRPRTLEEFTGQVEACS----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP T E++ GQ + ++ FI+ L ++F GP G+GKTTLA V++ E Sbjct: 30 IRPTTFEQYVGQDHLINPIDGAIRNFIKLG-----YLPSMIFTGPSGIGKTTLASVISYE 84 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLSIIVEE 123 G+ F S + DL + E + VLFIDE+HRL+ I ++ Sbjct: 85 CGLPFLELSATTMTTM-DLKTTIMQKNQKNQKNQKNQNVGEQKIVLFIDELHRLTKIQQD 143 Query: 124 ILYPAMEDFQLDLMVGEG---PSARSVKINLSR---FTLIAATTR--VGLLTNPLQDRFG 175 L P +E+ ++ +++G P+ R + LSR F L T + +L + F Sbjct: 144 WLLPYLENGEI-VLIGATTIQPNTRIRQAILSRCQVFKLEKLTRKEIKKVLCQAI--TFQ 200 Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231 R + Y+ L IV DE I R++G RIA L+ + D Sbjct: 201 NLKRKHLYQ---LGAIVYDDDDEEQGDGVDECFDLILDRAQGDCRIAINLIELISD 253 >gi|146307409|ref|YP_001187874.1| recombination factor protein RarA [Pseudomonas mendocina ymp] gi|145575610|gb|ABP85142.1| Recombination protein MgsA [Pseudomonas mendocina ymp] Length = 440 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR +L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATSLDEYVGQEHVLAPGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVTDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETISAVLSGVKEIRQAVEVAQQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|159902628|ref|YP_001549972.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT 9211] gi|159887804|gb|ABX08018.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9211] Length = 455 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP TL++F GQ ++ A + + + ++LF GPPG+GKTTL++++A + Sbjct: 24 LRPTTLDDFVGQQAILGPGRLLRRAIEC--DRVGNILFQGPPGIGKTTLSKIIASNTRAH 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F S V++ +L + ++ R +LFIDE+HR + ++ L P +E+ Sbjct: 82 F-SELNAVLSGIKELRQEIDAAKNRLGQHGLRTILFIDEVHRFTTSQQDALLPWVEN 137 >gi|240136936|ref|YP_002961405.1| recombination protein [Methylobacterium extorquens AM1] gi|240006902|gb|ACS38128.1| recombination protein [Methylobacterium extorquens AM1] Length = 447 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E GQ +R+ L ++F GPPG GKTT+A+++A E ++ Sbjct: 32 LRPRRLAEVVGQEHLTGPDGALTRLLASRS--LGSLVFWGPPGTGKTTVARLLAHETALH 89 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + + P MED + Sbjct: 90 FEQISA-IFSGIADLRKVFEAARKRRATGQGTLLFVDEIHRFNRAQLDAFLPVMEDGTVT 148 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 149 LVGATTENPS 158 >gi|68483119|ref|XP_714494.1| hypothetical protein CaO19.11084 [Candida albicans SC5314] gi|68483220|ref|XP_714445.1| hypothetical protein CaO19.3601 [Candida albicans SC5314] gi|46436011|gb|EAK95381.1| hypothetical protein CaO19.3601 [Candida albicans SC5314] gi|46436067|gb|EAK95436.1| hypothetical protein CaO19.11084 [Candida albicans SC5314] Length = 547 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 104/236 (44%), Gaps = 38/236 (16%) Query: 22 LRPRTLEEFTGQVEACS----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP T E++ GQ + ++ FI+ L ++F GP G+GKTTLA V++ E Sbjct: 30 IRPTTFEQYVGQDHLINPIDGAIRNFIKLG-----YLPSMIFTGPSGIGKTTLASVISYE 84 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLSIIVEE 123 G+ F S + DL + E + VLFIDE+HRL+ I ++ Sbjct: 85 CGLPFLELSATTMTTM-DLKTTIMQKNQKNQKNQKNQNVGEQKIVLFIDELHRLTKIQQD 143 Query: 124 ILYPAMEDFQLDLMVGEG---PSARSVKINLSR---FTLIAATTR--VGLLTNPLQDRFG 175 L P +E+ ++ +++G P+ R + LSR F L T + +L + F Sbjct: 144 WLLPYLENGEI-VLIGATTIQPNTRIRQAILSRCQVFKLEKLTRKEIKKVLCQAI--TFQ 200 Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231 R + Y+ L IV DE I R++G RIA L+ + D Sbjct: 201 NLKRKHLYQ---LGAIVYDDDDEEQGDGVDECFDLILDRAQGDCRIAINLIELISD 253 >gi|330503298|ref|YP_004380167.1| recombination factor protein RarA [Pseudomonas mendocina NK-01] gi|328917584|gb|AEB58415.1| recombination factor protein RarA [Pseudomonas mendocina NK-01] Length = 441 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR +L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATSLDEYVGQEHVLAPGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVTDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETISAVLSGVKEIRQAVEVAQQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|328876848|gb|EGG25211.1| putative helicase [Dictyostelium fasciculatum] Length = 795 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 15/151 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T++EF GQ E + + + ++ + + GPPG GKTTLA+++A+ + Sbjct: 265 MRPTTMKEFIGQHEL---MDQSLISTLFKSGDMPSCIIWGPPGCGKTTLARLIAKNSSSH 321 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ + ++ + +LFIDEIHR S + ++ L P +E+ + Sbjct: 322 IIMMSA-VGSGVADIKKHVQEAQNSLAFGKKTILFIDEIHRFSKLQQDALLPPVENGIVT 380 Query: 136 LM--VGEGPSARSVKINLSR---FTLIAATT 161 L+ E PS LSR FTL TT Sbjct: 381 LIGATTENPSFEVNNALLSRCRVFTLTKLTT 411 >gi|332882226|ref|ZP_08449856.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679849|gb|EGJ52816.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 425 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLE++ GQ E + + AR L ++F GPPG GKTTLA ++A + Sbjct: 8 MRPTTLEDYVGQ-EHLVGTQGALSQQIARG-FLPSLIFWGPPGTGKTTLANIIAHQSNRA 65 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VI ++ L T ++FIDEIHR + ++ L A+E Sbjct: 66 FYTLSAISSGIKEVREVIEQSKQSGGLFTT--QNPIVFIDEIHRFNKTQQDSLLQAVEKG 123 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 124 WITLIGATTENPSFEVIPALLSR 146 >gi|325290070|ref|YP_004266251.1| Recombination protein MgsA [Syntrophobotulus glycolicus DSM 8271] gi|324965471|gb|ADY56250.1| Recombination protein MgsA [Syntrophobotulus glycolicus DSM 8271] Length = 434 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +F GQ E K+ A +A + + ++ GPPG GKT++AQ++A + Sbjct: 20 MRPQGFADFIGQEEILGPGKLLRRAIEA--DRIGSIILFGPPGSGKTSIAQIIANHTSSD 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F + V A A +L A++ E+ + ++F DE+HR + ++IL PA+E Sbjct: 78 FVRINA-VSAGAKELRAIIDQAEEKLKLYGQKTLVFCDEVHRFNKGQQDILLPAVE 132 >gi|319761904|ref|YP_004125841.1| aaa atpase central domain protein [Alicycliphilus denitrificans BC] gi|317116465|gb|ADU98953.1| AAA ATPase central domain protein [Alicycliphilus denitrificans BC] Length = 437 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 86/327 (26%), Positives = 135/327 (41%), Gaps = 60/327 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL E GQ L++ E+ + + + GPPG+GKTT+A+++A Sbjct: 15 LRPRTLGEVVGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMAEAF 69 Query: 79 GVNFRSTSGPVIAKAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F S S V+ D+ +A + R ++F+DE+HR + ++ P +E Sbjct: 70 DAQFISISA-VLGGVKDIRDAVQLAESAAGGLMPQRTIVFVDEVHRFNKSQQDAFLPHVE 128 Query: 131 D--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 F E PS LSR AA + LT+ +DL Sbjct: 129 SGLFTFVGATTENPSFEVNSALLSR----AAVYVLQPLTS-----------------DDL 167 Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 K IV R + L A+ +EA + + G R L + AE A +TIT D Sbjct: 168 KRIVVRAQDIQALPAIENEALERLIAYADGDARRLLNTLETLSVTAEQAKVETIT----D 223 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 A LL++ ++M R GG +TISA R + D ++++ Sbjct: 224 AWLLQVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRM 270 Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332 PR R ++ +AW+ +G+ P Sbjct: 271 LDGGADPRYMARRIVRMAWEDIGLADP 297 >gi|298291465|ref|YP_003693404.1| ATPase AAA [Starkeya novella DSM 506] gi|296927976|gb|ADH88785.1| AAA ATPase central domain protein [Starkeya novella DSM 506] Length = 437 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E GQ + +R+ L ++F GPPG GKTT+A+++A E ++ Sbjct: 22 LRPQRLAEVVGQEHLTGPDGILTRMIDSRS--LGSLIFWGPPGTGKTTVARLLAHETDLH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + +L + R +LF+DEIHR + ++ P MED + Sbjct: 80 FEQVSA-IFTGVAELKKVFEAARGRRAVGRGTLLFVDEIHRFNKAQQDSFLPVMEDGTVT 138 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 139 LIGATTENPS 148 >gi|27380478|ref|NP_772007.1| recombination factor protein RarA [Bradyrhizobium japonicum USDA 110] gi|27353642|dbj|BAC50632.1| bll5367 [Bradyrhizobium japonicum USDA 110] Length = 445 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 8/134 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E GQ + R L ++F GPPG GKTT+A+++A ++ Sbjct: 30 LRPRALSEVVGQDHILGPDGALTRMLETRT--LGSLVFWGPPGTGKTTVARLLADATDLH 87 Query: 82 FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F S + KA D A + +LF+DE+HR + ++ P MED + + Sbjct: 88 FEQISAVFSGVADLKKAFDAARARREMGKGTLLFVDEVHRFNRAQQDSFLPVMEDGTV-V 146 Query: 137 MVGEGPSARSVKIN 150 MVG S ++N Sbjct: 147 MVGATTENPSFELN 160 >gi|54308357|ref|YP_129377.1| recombination factor protein RarA [Photobacterium profundum SS9] gi|46912785|emb|CAG19575.1| putative ATPase protein [Photobacterium profundum SS9] Length = 446 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 110/269 (40%), Gaps = 46/269 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+EE+ GQ K A +A L ++ GPPG GKTTLA+V A Sbjct: 19 MRPRTVEEYIGQQHILGVGKPLRRALEAGH--LHSMILWGPPGTGKTTLAEVAANYANAE 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ + + R +LF+DE+HR + ++ P +ED Sbjct: 77 VERVSA-VTSGVKDIRIAIDKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIED---- 131 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 T I ATT L N L R + +L E ++ +V+ Sbjct: 132 ----------------GTVTFIGATTENPSFELNNALLSRARV-YKLKSLETAEVLAVVE 174 Query: 194 -------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA--KTITRE 244 RG T L D+ ++ G R++ L ++ D AE A K IT E Sbjct: 175 QALKDSSRGISDTNLEFVDDVKERLSELVCGDARMSLNYLEQLVDMAEENKAGIKYITLE 234 Query: 245 IADAALLRLAIDKMG-FDQLDLRYLTMIA 272 + L +A +K+G FD + MI+ Sbjct: 235 L----LAEVAGEKIGRFDNKGDLWYDMIS 259 >gi|326794638|ref|YP_004312458.1| ATPase AAA [Marinomonas mediterranea MMB-1] gi|326545402|gb|ADZ90622.1| AAA ATPase central domain protein [Marinomonas mediterranea MMB-1] Length = 446 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 21/161 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L ++ GQ V L+ IE+ + + GPPG+GKTT AQ+ A+ + Sbjct: 21 MRPMSLSDYFGQEHLVGEGKPLRKMIESQHGHS-----FILWGPPGVGKTTFAQLFAKSM 75 Query: 79 GVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S V++ D+ A + T +LF+DE+HR + ++ P +ED Sbjct: 76 SAQFIELSA-VMSGVKDIRAAVEKAKQWRTVHNSSTLLFVDEVHRFNKSQQDAFLPFIED 134 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 L VG + ++N + + + RV LTNP D Sbjct: 135 GTF-LFVGATTENPAFELN----SALLSRARVYRLTNPSVD 170 >gi|229591234|ref|YP_002873353.1| recombination factor protein RarA [Pseudomonas fluorescens SBW25] gi|229363100|emb|CAY50103.1| conserevd hypothetical protein [Pseudomonas fluorescens SBW25] Length = 440 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRSTNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|329910976|ref|ZP_08275423.1| AAA ATPase, central region [Oxalobacteraceae bacterium IMCC9480] gi|327546035|gb|EGF31112.1| AAA ATPase, central region [Oxalobacteraceae bacterium IMCC9480] Length = 431 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 108/249 (43%), Gaps = 56/249 (22%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V E+ + + ++ GPPG+GKTTLA+++A Sbjct: 10 LRPTTLDQVIGQQHLLGPGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMADSF 64 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 +F + S V++ D+ + + R +LF+DE+HR + ++ P +E Sbjct: 65 AADFIALSA-VLSGVKDIREAVERAQLSRGAMGRRTILFVDEVHRFNKSQQDAFLPHVES 123 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-------LQDRFGIPIRLNFYE 184 FT I ATT NP L R + + + E Sbjct: 124 --------------------GLFTFIGATTE-----NPSFEVNGALLSRAAVYVLKSLTE 158 Query: 185 IEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 +DL ++ R + L GL D+A + + G R +LL + A A AK++ Sbjct: 159 -DDLGQLLDRACRDLLDGLQFADDAKTTLVASADGDGR---KLLNNLEIVARAAAAKSVV 214 Query: 243 REIADAALL 251 + DAALL Sbjct: 215 --LVDAALL 221 >gi|323436175|ref|ZP_01051125.2| ATPase family associated with various cellular activities (AAA) [Dokdonia donghaensis MED134] gi|321496490|gb|EAQ37959.2| ATPase family associated with various cellular activities (AAA) [Dokdonia donghaensis MED134] Length = 426 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LE++ Q +A KA + ++ GPPG+GKTTLA ++A E Sbjct: 10 LRPKKLEDYLSQHHLVGENGSLQQALKAGI--IPSLILWGPPGIGKTTLATIIAEESKRP 67 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VI KA L T + +LFIDEIHR S ++ L A+E Sbjct: 68 FYTLSAINSGVKDIREVIDKAKQSGGLFT--QKNPILFIDEIHRFSKSQQDSLLGAVERG 125 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 126 WVTLVGATTENPSFEVIPALLSR 148 >gi|254283872|ref|ZP_04958840.1| ATPase, AAA family [gamma proteobacterium NOR51-B] gi|219680075|gb|EED36424.1| ATPase, AAA family [gamma proteobacterium NOR51-B] Length = 445 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 30/208 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP L ++ GQV K EA + R + +L+ GPPG GKTTLA++ A + F Sbjct: 25 RPSALADYVGQVHVLGPGKPLREAIE-RGDLHSFILW-GPPGTGKTTLARLSAHQANAEF 82 Query: 83 RSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S V+A D+ ++ VLF+DE+HR + ++ P +ED L + Sbjct: 83 VQISA-VMAGVKDIRDVVARASQERGMGRATVLFVDEVHRFNKAQQDAFLPYVEDGTL-I 140 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-- 194 +G S ++N + + + RV L PL D ++L IV+ Sbjct: 141 FIGATTENPSFEVN----SALLSRARVYKL-QPLSD-------------DELSRIVRAAL 182 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIA 222 A+ T + V+D+A ++ + G R A Sbjct: 183 AAEFTDVTVSDDALSQLVASADGDARRA 210 >gi|21673587|ref|NP_661652.1| recombination factor protein RarA [Chlorobium tepidum TLS] gi|21646700|gb|AAM71994.1| ATPase, AAA family [Chlorobium tepidum TLS] Length = 451 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 26/163 (15%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+++E GQ V ++ ++E + + ++F GPPG GKTTLA++ AR L Sbjct: 33 VRPRSIDELFGQEHLVGPGGPVRSYLEQGR-----IPSMIFWGPPGSGKTTLAEICARSL 87 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDV-LFIDEIHRLSIIVEEILYPAMEDF 132 F S + + +LA +++ R + LFIDEIHR + ++ L A+E Sbjct: 88 NYRFEQLSATDAGVKDVRRVLELAQKSRSIDGRQMLLFIDEIHRFNKAQQDTLLHAIEQ- 146 Query: 133 QLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 L +++G E PS + LSR + + NPL + Sbjct: 147 GLIVLIGATTENPSFEVNRALLSRMQV--------YILNPLSE 181 >gi|84515662|ref|ZP_01003023.1| ATPase, AAA family [Loktanella vestfoldensis SKA53] gi|84510104|gb|EAQ06560.1| ATPase, AAA family [Loktanella vestfoldensis SKA53] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ L E GQ + L + + +L ++F GPPG+GKTT+A+++A E Sbjct: 23 LRPKRLAEVIGQQQVLGTDAPLGTMLASG-----SLSSLVFWGPPGVGKTTIARLLADET 77 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 78 DLHFVQISAIFTGVPELRKVFEAAKMRRQNGKGTLLFVDEIHRFNKAQQDGFLPYMEDGT 137 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 138 I-LLVGATTENPSFELN 153 >gi|312961667|ref|ZP_07776165.1| ATPase, AAA family [Pseudomonas fluorescens WH6] gi|311283926|gb|EFQ62509.1| ATPase, AAA family [Pseudomonas fluorescens WH6] Length = 441 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRSTNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|264677024|ref|YP_003276930.1| transporter ATM1 precursor [Comamonas testosteroni CNB-2] gi|262207536|gb|ACY31634.1| transporter ATM1 precursor [Comamonas testosteroni CNB-2] Length = 446 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 83/327 (25%), Positives = 133/327 (40%), Gaps = 60/327 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL E GQ L++ E+ + + + GPPG+GKTT+A+++A Sbjct: 21 LRPHTLAEVIGQQHVLGEGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMADAF 75 Query: 79 GVNFRSTSGPVIAKAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F S S V+ D+ AA L+ R ++F+DE+HR + ++ P +E Sbjct: 76 DAQFISISA-VLGGVKDIREAVEQAQAAQSGLLQQRTIVFVDEVHRFNKGQQDAFLPHVE 134 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDL 188 FT I ATT + + L R + + L +DL Sbjct: 135 S--------------------GLFTFIGATTENPSFEVNSALLSRAAVYV-LQSLTPDDL 173 Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 K IV + + + A+ DEA + + G R L + AE A ++IT D Sbjct: 174 KQIVAKAQAIQAIPAIEDEALERLIAYADGDARRLLNTLETLSITAEQAGVQSIT----D 229 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 A LL++ ++M R GG +TISA R + D + + Sbjct: 230 AWLLKVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWFCRM 276 Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332 PR R ++ +AW+ +G+ P Sbjct: 277 LDGGADPRYLARRIVRMAWEDIGLADP 303 >gi|218528368|ref|YP_002419184.1| recombination factor protein RarA [Methylobacterium chloromethanicum CM4] gi|218520671|gb|ACK81256.1| AAA ATPase central domain protein [Methylobacterium chloromethanicum CM4] Length = 440 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E GQ +R+ L ++F GPPG GKTT+A+++A E ++ Sbjct: 25 LRPRRLAEVVGQEHLTGPDGALTRLLASRS--LGSLVFWGPPGTGKTTVARLLAHETALH 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + + P MED + Sbjct: 83 FEQISA-IFSGIADLRKVFEAARKRRATGQGTLLFVDEIHRFNRAQLDAFLPVMEDGTVT 141 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 142 LVGATTENPS 151 >gi|163849727|ref|YP_001637770.1| recombination factor protein RarA [Methylobacterium extorquens PA1] gi|163661332|gb|ABY28699.1| AAA ATPase central domain protein [Methylobacterium extorquens PA1] Length = 437 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E GQ +R+ L ++F GPPG GKTT+A+++A E ++ Sbjct: 22 LRPRRLAEVVGQEHLTGPDGALTRLLASRS--LGSLVFWGPPGTGKTTVARLLAHETALH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + + P MED + Sbjct: 80 FEQISA-IFSGIADLRKVFEAARKRRATGQGTLLFVDEIHRFNRAQLDAFLPVMEDGTVT 138 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 139 LVGATTENPS 148 >gi|327393324|dbj|BAK10746.1| ATPase AAA family YcaJ [Pantoea ananatis AJ13355] Length = 455 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 17/150 (11%) Query: 6 GLLSRNVSQEDAD--ISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFV 60 G LS + S ED + +RP TL+ + GQ + A L IEA L ++ Sbjct: 10 GNLSLDFSSEDFKPLAARMRPETLKHYIGQQHLLAAGKPLPRAIEAGH-----LHSMILW 64 Query: 61 GPPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIH 115 GPPG GKTTLA+++A + TSG I +A + A L R +LF+DE+H Sbjct: 65 GPPGTGKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERARLSKQAGRRTILFVDEVH 124 Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPS 143 R + ++ P +ED + + E PS Sbjct: 125 RFNKSQQDAFLPHIEDGTITFIGATTENPS 154 >gi|315126411|ref|YP_004068414.1| recombination factor protein RarA [Pseudoalteromonas sp. SM9913] gi|315014925|gb|ADT68263.1| recombination factor protein RarA [Pseudoalteromonas sp. SM9913] Length = 447 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 37/232 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP +L ++ GQ S K +A A R +L + GPPG+GKTTLAQ++A Sbjct: 19 MRPLSLNDYIGQQHLLSADKPLHQAIVAGRCHSL---ILWGPPGVGKTTLAQIIANHADA 75 Query: 81 NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 S V A D+ +T D R ++F+DE+HR + ++ P +ED Sbjct: 76 ELIQMSA-VTAGVKDIRDSVTQARDNLQSRGQRTLMFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + VG S +N I + RV +L + LQ+ DL T+++ Sbjct: 135 F-IFVGATTENPSFALN----NAILSRARVYVLKS-LQE-------------SDLYTVIE 175 Query: 194 RGAK------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 R K + + D A + S G R LL + D + K Sbjct: 176 RALKQDEQLSQKQIVIADNAKQALCQASGGDARKVLNLLEQAVDLTTEQNGK 227 >gi|297562029|ref|YP_003681003.1| ATPase AAA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846477|gb|ADH68497.1| AAA ATPase central domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 456 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 16/120 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E +A V GPPG GKTTLA VV+R Sbjct: 33 MRPRTLDEVVGQRHLLGEGSPLRRLVED-----DAPMSVFLWGPPGTGKTTLATVVSRVT 87 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S V A D+ A++ + R +LF+DE+HR + ++ L PA+E+ Sbjct: 88 KRRFVELSA-VNAGVKDVRAVIDDARRRMGMHGTRTLLFVDEVHRFNKTQQDALLPAVEN 146 >gi|304311214|ref|YP_003810812.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [gamma proteobacterium HdN1] gi|301796947|emb|CBL45160.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [gamma proteobacterium HdN1] Length = 467 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 115/260 (44%), Gaps = 41/260 (15%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TLEE+ GQ + A +L+ +E +A + ++ GPPG+GKTTLA ++A + Sbjct: 19 MRPLTLEEYAGQEHLLGANGSLRKALELGQAHS-----MILWGPPGVGKTTLAMLMANYI 73 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S + I A D A + +LF+DE+HR + ++ P +ED Sbjct: 74 EAQFITLSAVLSGVKEIRAAIDEARHYRQQGRQCLLFVDEVHRFNKSQQDAFLPHIEDGT 133 Query: 134 LDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + + VG S ++N LSR RV +L PL D I R L++ Sbjct: 134 V-IFVGATTENPSFELNGALLSR-------ARVYVL-KPL-DASAITAR--------LRS 175 Query: 191 IVQRGAKLTGLAVTDEAAC--EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 +Q L G + E A IA + G R A LL AE A +T I Sbjct: 176 AMQDARGLAGAGIRAEDAILETIARAADGDMRRAYNLLEIATSLAEADGADQVTEAILSQ 235 Query: 249 ALLRLA--IDKMG---FDQL 263 A+ DK G +DQ+ Sbjct: 236 AVGEGGRRFDKHGDQFYDQI 255 >gi|238924018|ref|YP_002937534.1| Holliday junction DNA helicase B [Eubacterium rectale ATCC 33656] gi|238875693|gb|ACR75400.1| Holliday junction DNA helicase B [Eubacterium rectale ATCC 33656] Length = 79 Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 7 LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 ++S + +ED I LRP +++ GQ + NLK++IEAAK+R EALDHVLF GP L Sbjct: 4 VISTQLQEEDIKIEKSLRPMYFDDYIGQQKIKDNLKIYIEAAKSRGEALDHVLFYGPRDL 63 Query: 66 GKTTLAQ 72 + L + Sbjct: 64 ERQHLQE 70 >gi|183982180|ref|YP_001850471.1| hypothetical protein MMAR_2167 [Mycobacterium marinum M] gi|183175506|gb|ACC40616.1| conserved alanine, valine and leucine rich protein [Mycobacterium marinum M] Length = 452 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 38/187 (20%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + + L+ +E + + V+ GPPG GKTTLA +++ Sbjct: 35 MRPESLDEVVGQGHLLAPGAPLRRLVEGS-----GVASVILYGPPGSGKTTLAALISHAT 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A D+ A++ ++ VLFIDE+HR S ++ L A+E+ Sbjct: 90 GRRFEALSA-LSAGVKDVRAVIETARQVLRRGEQTVLFIDEVHRFSKTQQDALLSAVENR 148 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + L+ E PS F+++A PL R I ++L+ +D++ Sbjct: 149 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLHPLGADDIRA 187 Query: 191 IVQRGAK 197 +VQR A+ Sbjct: 188 VVQRAAQ 194 >gi|153003645|ref|YP_001377970.1| recombination factor protein RarA [Anaeromyxobacter sp. Fw109-5] gi|152027218|gb|ABS24986.1| AAA ATPase central domain protein [Anaeromyxobacter sp. Fw109-5] Length = 444 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR LE+F GQ + L+ IEA + + ++ GPPG GKTTLA++VA+ Sbjct: 21 MRPRRLEDFVGQEHVLGRDTGLRRAIEA-----DQVPSLIVWGPPGTGKTTLARIVAKRT 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 G F S V+ ++ ++ R +LF+DEIHR + ++ P +ED Sbjct: 76 GAEFVPFSA-VLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRFTKAQQDAFLPHVED 134 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLI 157 + L+ E PS LSR ++ Sbjct: 135 GTITLIGATTENPSFEVNAALLSRCRVV 162 >gi|149202871|ref|ZP_01879842.1| ATPase, AAA family protein [Roseovarius sp. TM1035] gi|149143417|gb|EDM31453.1| ATPase, AAA family protein [Roseovarius sp. TM1035] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 19/151 (12%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L + GQ + + L V + + +L ++F GPPG+GKTT+A+++A E Sbjct: 25 LRPRRLVDVIGQEQVLGPEAPLGVMLASG-----SLSSLVFWGPPGVGKTTIARLLADET 79 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 ++F S + DL + + R +LF+DEIHR + ++ P MED Sbjct: 80 DLHFVQISA-IFTGVPDLRKVFDEAKHRRTQGRGTLLFVDEIHRFNKAQQDGFLPHMEDG 138 Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLIAAT 160 + L+VG S ++N LSR ++ T Sbjct: 139 TI-LLVGATTENPSFELNAALLSRAQVLVLT 168 >gi|327480897|gb|AEA84207.1| recombination factor protein RarA [Pseudomonas stutzeri DSM 4166] Length = 441 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR +L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRAASLDEYVGQEHLLARGKPLREALEQ--GALHSMVFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAA-LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|77462287|ref|YP_351791.1| recombination factor protein RarA [Rhodobacter sphaeroides 2.4.1] gi|77386705|gb|ABA77890.1| Recombination protein MgsA [Rhodobacter sphaeroides 2.4.1] Length = 437 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 11/144 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L E GQ + S A + +L ++ GPPG+GKTT+A+++A+E + Sbjct: 24 LRPKSLAEVIGQGKVLSPDGPL--GAMLVSGSLSSLILWGPPGVGKTTIARLLAKETDLA 81 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F S P + K + A L +LF+DEIHR + ++ P MED + L Sbjct: 82 FVQISAIFTGVPDLRKVFEAAKLRRANGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTI-L 140 Query: 137 MVGEGPSARSVKIN---LSRFTLI 157 +VG S ++N +SR +I Sbjct: 141 LVGATTENPSFELNAALMSRAQVI 164 >gi|295092387|emb|CBK78494.1| Recombination protein MgsA [Clostridium cf. saccharolyticum K10] Length = 462 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 16/140 (11%) Query: 20 SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S +RP +LEEF GQ L+ IE + + ++F GPPG+GKTTLA ++A Sbjct: 18 SRMRPESLEEFFGQSHLLGEGMLLRNLIER-----DQVSSMIFWGPPGVGKTTLASIIAN 72 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V + ++ ++ E+ + V+F+DEIHR + ++ P +E Sbjct: 73 RTNAGFINFSA-VTSGIKEIREVMAKAEEARHRGMKTVVFVDEIHRFNKAQQDAFLPYVE 131 Query: 131 DFQLDLMVGEGPSARSVKIN 150 + +++G S +IN Sbjct: 132 RGSI-ILIGATTENPSFEIN 150 >gi|167624139|ref|YP_001674433.1| recombination factor protein RarA [Shewanella halifaxensis HAW-EB4] gi|167354161|gb|ABZ76774.1| AAA ATPase central domain protein [Shewanella halifaxensis HAW-EB4] Length = 443 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 110/259 (42%), Gaps = 38/259 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP LE++ GQ K +A +A RA ++ +F GPPG GKTTLA++VA Sbjct: 19 MRPERLEQYIGQSHLLGEGKPLRQALEAGRAHSM---MFWGPPGTGKTTLAELVAHYANA 75 Query: 81 NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + S V + ++ + + + ++ R +LF+DE+HR + ++ P +ED Sbjct: 76 HVERISA-VTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGT 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + + +G S +IN + + RV L+ E E++ IVQ Sbjct: 135 V-IFIGATTENPSFEIN----NALLSRARVYLIKQ--------------LEPEEIGQIVQ 175 Query: 194 -------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 RG L + + + ++A G R A L+ + D + A T IA Sbjct: 176 QALEDEERGLGKRKLLLPADVSLKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIIA 235 Query: 247 DAALLRLAIDKMGFDQLDL 265 A DK G DL Sbjct: 236 VAGQQLAGFDKNGDQYYDL 254 >gi|77459806|ref|YP_349313.1| recombination factor protein RarA [Pseudomonas fluorescens Pf0-1] gi|77383809|gb|ABA75322.1| conserevd hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 441 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A + Sbjct: 18 LRATNLDEYVGQEHVLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAEVSDAH 75 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 76 FETVSAVLAGVKEIRQAVEIAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 134 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 135 IFIGATTENPSFELN 149 >gi|87122210|ref|ZP_01078093.1| putative ATPase [Marinomonas sp. MED121] gi|86162530|gb|EAQ63812.1| putative ATPase [Marinomonas sp. MED121] Length = 448 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 23/172 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L ++ GQ V LK IE + + + G PG+GKTT A++++ +L Sbjct: 19 MRPRQLSDYLGQEHLVGEGKPLKRMIETGRCHS-----FILWGAPGVGKTTFAKLLSHQL 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 +F S V++ D+ A + + VLF+DE+HR + ++ P +ED Sbjct: 74 QAHFLELSA-VMSGVKDIRAAVEQAKQHKMMNAGQTVLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181 L +G + ++N + + + RV L P QD R G+ LN Sbjct: 133 GTF-LFIGATTENPAFELN----SALLSRARVYSLKKPSQDIIRTGLERALN 179 >gi|149377437|ref|ZP_01895180.1| putative ATPase associated with chromosome architecture [Marinobacter algicola DG893] gi|149358278|gb|EDM46757.1| putative ATPase associated with chromosome architecture [Marinobacter algicola DG893] Length = 447 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 15/154 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L+E+ GQ K A + L ++ GPPG+GKTT A+++A ++ Sbjct: 19 MRPASLDEYVGQSHLVGEGKPLRRAVEQ--GQLHSMILWGPPGVGKTTFARLLANLSDLS 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V++ D+ ++ ++R +LF+DE+HR + ++ P +ED Sbjct: 77 FETVSA-VLSGVKDIRLIVERAKERKRSEGRDTLLFVDEVHRFNKSQQDAFLPHIEDGTF 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 + VG S ++N + + + TRV +L N Sbjct: 136 -IFVGATTENPSFELN----SALLSRTRVYVLKN 164 >gi|237746808|ref|ZP_04577288.1| recombination factor protein RarA [Oxalobacter formigenes HOxBLS] gi|229378159|gb|EEO28250.1| recombination factor protein RarA [Oxalobacter formigenes HOxBLS] Length = 430 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 42/232 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+T++E GQ + L++ E+ + + ++ GPPG+GKTTLA+++A Sbjct: 10 LRPQTIDEVVGQEHLLGPGKPLRLAFESGEPHS-----MILWGPPGVGKTTLARLMADGF 64 Query: 79 GVNFRSTSGPV-----IAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S + I +A + A L+ + R +LF+DE+HR + ++ P +E Sbjct: 65 NAEFIALSAVLSGVKDIREAVERARLIRSGSGRRTILFVDEVHRFNKSQQDAFLPHVES- 123 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKT 190 FT I ATT + N L R + + L + +L T Sbjct: 124 -------------------GLFTFIGATTENPSFEVNNALLSRAAVYV-LKPLDNGNLDT 163 Query: 191 IVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 +V R +L GL V+ EA + M + G R RLL + A+ A AK Sbjct: 164 LVNRALERELDGLTVSAEARTLLLMSADGDAR---RLLNNLEIVAQAARAKN 212 >gi|158424151|ref|YP_001525443.1| recombination factor protein RarA [Azorhizobium caulinodans ORS 571] gi|158331040|dbj|BAF88525.1| AAA ATPase [Azorhizobium caulinodans ORS 571] Length = 469 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 12/142 (8%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +LRP+ LE+ GQ K + L + GPPG GKTT+A++VAR LG Sbjct: 51 VLRPQRLEDVIGQEHLLGPEGPIGRMVKGKR--LSSFILWGPPGSGKTTIARLVARGLGF 108 Query: 81 NFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S V++ DL ++ T + +F+DE+HR + ++ L P +ED Sbjct: 109 EFVQLSA-VLSGVADLRKVVETARQLRTGSGRQTAVFVDELHRFNRTTQDALLPHVEDGT 167 Query: 134 LDLM--VGEGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 168 IVLIGATTENPSFSMVAALLSR 189 >gi|260061886|ref|YP_003194966.1| recombination factor protein RarA [Robiginitalea biformata HTCC2501] gi|88786019|gb|EAR17188.1| putative ATPase, AAA family protein [Robiginitalea biformata HTCC2501] Length = 427 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 67/146 (45%), Gaps = 21/146 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L E+ Q V + A R A + ++F GPPG GKTTLA ++A E Sbjct: 9 VRPRKLSEYLSQTHL-----VGPQGALTRQIANGTVPSMIFWGPPGTGKTTLAHIIAEES 63 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 G F + S VI KA L T +LFIDEIHR S ++ L A+ Sbjct: 64 GRPFFTLSAINSGVKDVREVIEKARQGGGLFTT--RNPILFIDEIHRFSKSQQDSLLAAV 121 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153 E + L+ E PS + LSR Sbjct: 122 EKGWVTLIGATTENPSFEVIPALLSR 147 >gi|46203510|ref|ZP_00051413.2| COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [Magnetospirillum magnetotacticum MS-1] Length = 175 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E GQ +R+ L ++F GPPG GKTT+A+++A E ++ Sbjct: 22 LRPRRLSEVVGQEHLTGPDGALTRLLASRS--LGSLVFWGPPGTGKTTVARLLAHETALH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + + P MED + Sbjct: 80 FEQISA-IFSGIADLRKVFEAARKRRSTGQGTLLFVDEIHRFNRAQLDAFLPVMEDGTVT 138 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 139 LVGATTENPS 148 >gi|157363945|ref|YP_001470712.1| recombination factor protein RarA [Thermotoga lettingae TMO] gi|157314549|gb|ABV33648.1| AAA ATPase central domain protein [Thermotoga lettingae TMO] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 24/208 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +E+ GQ + +A + + VL+ GPPG GK+++A+++ + + Sbjct: 14 VRPKNVEDLVGQQHVMGKEGILRKALE-KGMMFSCVLY-GPPGCGKSSIAELIRKHVDAE 71 Query: 82 FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F SG + I +A + A + + ++FIDEIHRL+ +++L +ED + L Sbjct: 72 FFFFSGALHGANDIKQAMNRAQEMKRYGKQTIIFIDEIHRLNKAQQDLLLSKVEDGTITL 131 Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + E PS + LSR +I PL + +I IV Sbjct: 132 IGATTENPSFEIIPPLLSRCRVI--------FLKPLSNE-------ELIKIMKRAIIVDE 176 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIA 222 + VTDE IA S+G R A Sbjct: 177 KIASYEINVTDEVFQAIAQMSQGDARFA 204 >gi|254495330|ref|ZP_05108254.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Polaribacter sp. MED152] gi|85819684|gb|EAQ40841.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Polaribacter sp. MED152] Length = 423 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 65/143 (45%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TLE++ Q V K + ++ GPPG+GKTTLA ++A E Sbjct: 9 IRPKTLEDYISQQHLVGPKGVLTNLIKQGI--IPSLILWGPPGIGKTTLANIIATESNRP 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VI KA L T +LFIDEIHR S ++ L A+E Sbjct: 67 FYTLSAISSGVKDVREVIEKAKKSGGLFT--AKNPILFIDEIHRFSKSQQDSLLGAVEKG 124 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147 >gi|255530100|ref|YP_003090472.1| AAA ATPase central domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343084|gb|ACU02410.1| AAA ATPase central domain protein [Pedobacter heparinus DSM 2366] Length = 426 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 10/140 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E+ GQ V +A ++ L ++F GPPG+GKTTLA ++++ L Sbjct: 11 MRPQNLDEYVGQQHLVGPDAVLRKAIQSGQ--LPSMIFWGPPGVGKTTLAYIISQTLDRP 68 Query: 82 FRSTSG-----PVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S I D AALL + L +LFIDEIHR S ++ L A+E + Sbjct: 69 FFNLSAINSGVKDIRDVIDRAALLKDSLMGLPILFIDEIHRFSKSQQDSLLGAVERGLVT 128 Query: 136 LM--VGEGPSARSVKINLSR 153 L+ E PS + LSR Sbjct: 129 LIGATTENPSFEVISALLSR 148 >gi|256822345|ref|YP_003146308.1| AAA ATPase central domain-containing protein [Kangiella koreensis DSM 16069] gi|256795884|gb|ACV26540.1| AAA ATPase central domain protein [Kangiella koreensis DSM 16069] Length = 451 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L ++ GQ + A L+ IE + + ++F GPPG GKTTLA+++A+ Sbjct: 21 LRPTSLNDYVGQEHLLAAGKPLRQAIETQRPFS-----LIFWGPPGTGKTTLARLIAQSS 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132 +F + S V+A D+ A + +LF+DE+HR + ++ P +ED Sbjct: 76 NAHFITISA-VLAGVKDIRAAVDEARQYQSQGKPTILFVDEVHRFNKAQQDAFLPYVEDG 134 Query: 133 QLDLM--VGEGPS 143 L + E PS Sbjct: 135 TLTFIGATTENPS 147 >gi|315645809|ref|ZP_07898930.1| AAA ATPase central domain protein [Paenibacillus vortex V453] gi|315278570|gb|EFU41884.1| AAA ATPase central domain protein [Paenibacillus vortex V453] Length = 435 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L+E+ GQ K+ A +A + + +L GPPG GKTTLA +++++ + Sbjct: 21 MRPSSLDEYIGQEHIIGPGKLLRRAIEA--DQVSSILLYGPPGCGKTTLAHIISQQTKGH 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + V A D+ ++ + + +LF+DE+HR + ++ L PA+E+ Sbjct: 79 FVRLNA-VEASVKDVREVIEQAQSNRSLYGTKTILFLDEVHRFNSSRQDALLPAVEN 134 >gi|296504892|ref|YP_003666592.1| recombination factor protein RarA [Bacillus thuringiensis BMB171] gi|296325944|gb|ADH08872.1| recombination factor protein RarA [Bacillus thuringiensis BMB171] Length = 428 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 84/330 (25%), Positives = 130/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193 TLI ATT +NP I R +E+ ED+ ++ Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEEDILIGLK 160 Query: 194 R-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 R G + VTDEA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ + ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSALQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|170761682|ref|YP_001787888.1| recombination factor protein RarA [Clostridium botulinum A3 str. Loch Maree] gi|169408671|gb|ACA57082.1| ATPase, AAA family [Clostridium botulinum A3 str. Loch Maree] Length = 416 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 29/295 (9%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ LE+F GQ S K K ++ + + +F GPPG GKTTLA ++A + Sbjct: 7 LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64 Query: 81 NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + I ++ + + +L + VL+IDE+ + ++ L +ED ++ L Sbjct: 65 KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124 Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186 + E P K LSR + R ++ N L D+ GI I+ +F +E Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYSFESLE 183 Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237 + I Q + + LAV I + +A +R E A Sbjct: 184 YIGEICQGDYRKAYNILELAVNSHCGFNIEITLDYIESLAQSNIRADATGDEYYNILSAF 243 Query: 238 AKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFG-GGPVGIETISAGL 289 K+I ADAA+ LA I + R M+A + G P + +++G+ Sbjct: 244 QKSIRGSDADAAVHYLARLIKSGDITSITRRLSVMVAEDIGLAYPNALTIVNSGI 298 >gi|308389351|gb|ADO31671.1| recombination factor protein RarA [Neisseria meningitidis alpha710] gi|325130297|gb|EGC53064.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis OX99.30304] gi|325136258|gb|EGC58866.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M0579] gi|325202050|gb|ADY97504.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M01-240149] gi|325208196|gb|ADZ03648.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis NZ-05/33] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + +L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKSLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V + D+ + E +LF+DE+HR + ++ P +E+ Sbjct: 72 NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVENG 130 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153 >gi|304408765|ref|ZP_07390386.1| AAA ATPase central domain protein [Shewanella baltica OS183] gi|307302768|ref|ZP_07582523.1| AAA ATPase central domain protein [Shewanella baltica BA175] gi|304352586|gb|EFM16983.1| AAA ATPase central domain protein [Shewanella baltica OS183] gi|306913128|gb|EFN43550.1| AAA ATPase central domain protein [Shewanella baltica BA175] Length = 443 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT+ E+ GQ L+ +EA +A + ++ GPPG GKTTLA+++A Sbjct: 19 MRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + D+ A + + R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKIN 150 + + +G S +IN Sbjct: 133 GTV-IFIGATTENPSFEIN 150 >gi|146293105|ref|YP_001183529.1| recombination factor protein RarA [Shewanella putrefaciens CN-32] gi|145564795|gb|ABP75730.1| Recombination protein MgsA [Shewanella putrefaciens CN-32] Length = 443 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 41/265 (15%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR++ E+ GQ L+ +EA +A + ++ GPPG GKTTLA+++A+ Sbjct: 19 MRPRSIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAQYS 73 Query: 79 GVNFRS----TSG--PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 + TSG + A A+ + R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISAVTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNKSQQDAFLPFIEDG 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI- 191 + + +G S +IN + + RV L+ RL+ EI + T Sbjct: 134 TV-IFIGATTENPSFEIN----NALLSRARVYLIK-----------RLSNNEIAHIVTQA 177 Query: 192 ---VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 +RG L L + + ++A G R A LL + D V+ T T E+ Sbjct: 178 LADTERGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELMSDM--VSDNDTFTLEM--- 232 Query: 249 ALLRLAIDKM-GFDQLDLRYLTMIA 272 L+++A ++ GFD+ ++ +I+ Sbjct: 233 -LVQVAGHQVAGFDKNGDQFYDLIS 256 >gi|262373850|ref|ZP_06067128.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262311603|gb|EEY92689.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 424 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGENAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S VIA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFISLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTL--IAATTRVGLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR +TL + A L+ +Q D+F ++ Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDADAIQTLINKAIQSDKF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 F ++E+ ++Q A Sbjct: 176 FIQVEEYDALIQFAA 190 >gi|217973365|ref|YP_002358116.1| recombination factor protein RarA [Shewanella baltica OS223] gi|217498500|gb|ACK46693.1| AAA ATPase central domain protein [Shewanella baltica OS223] Length = 443 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT+ E+ GQ L+ +EA +A + ++ GPPG GKTTLA+++A Sbjct: 19 MRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + D+ A + + R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKIN 150 + + +G S +IN Sbjct: 133 GTV-IFIGATTENPSFEIN 150 >gi|114704681|ref|ZP_01437589.1| hypothetical protein FP2506_07091 [Fulvimarina pelagi HTCC2506] gi|114539466|gb|EAU42586.1| hypothetical protein FP2506_07091 [Fulvimarina pelagi HTCC2506] Length = 464 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 17/160 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E GQ + + L ++F GPPG GKTT+A+++A++ Sbjct: 50 LRPRMLSEVVGQEHLTGEGGILSRMLAGKN--LGSMIFWGPPGTGKTTVARLLAKDSDYA 107 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + DL + + R +LF+DEIHR + ++ P MED + Sbjct: 108 FEQISA-IFTGVADLKKVFESARMRRSNGRPTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 165 Query: 136 LMVGEGPSARSVKIN---LSRFTLIA----ATTRVGLLTN 168 ++VG S ++N LSR ++ TT + LL N Sbjct: 166 VLVGATTENPSFELNAALLSRARVLTFKPHDTTSLSLLLN 205 >gi|160875433|ref|YP_001554749.1| recombination factor protein RarA [Shewanella baltica OS195] gi|160860955|gb|ABX49489.1| AAA ATPase central domain protein [Shewanella baltica OS195] gi|315267623|gb|ADT94476.1| AAA ATPase central domain protein [Shewanella baltica OS678] Length = 443 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT+ E+ GQ L+ +EA +A + ++ GPPG GKTTLA+++A Sbjct: 19 MRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + D+ A + + R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKIN 150 + + +G S +IN Sbjct: 133 GTV-IFIGATTENPSFEIN 150 >gi|330810442|ref|YP_004354904.1| Replication-associated recombination protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378550|gb|AEA69900.1| Replication-associated recombination protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 442 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A + Sbjct: 18 LRATNLDEYVGQEHVLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAEVSDAH 75 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 76 FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 134 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 135 IFIGATTENPSFELN 149 >gi|152980972|ref|YP_001352846.1| recombination factor protein RarA [Janthinobacterium sp. Marseille] gi|151281049|gb|ABR89459.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 433 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E GQ L++ ++ K + ++F GPPG+GKTTLA++ A Sbjct: 17 LRPKTLDEVVGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTASAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V + D+ A + E +LF+DEIHR + ++ L P E Sbjct: 72 ECEFIALSA-VFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQDALLPYAE 128 >gi|323697890|ref|ZP_08109802.1| AAA ATPase central domain protein [Desulfovibrio sp. ND132] gi|323457822|gb|EGB13687.1| AAA ATPase central domain protein [Desulfovibrio desulfuricans ND132] Length = 407 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 32/225 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L++F GQ + ++ F A+++ + +L GPPG GK+TLA ++A+ G Sbjct: 15 IRPASLDDFVGQGHIRNRIEAF-----AQSKRMPSLLLFGPPGCGKSTLALLLAQLTGKK 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139 + S P +AG L AL L +++L +DE+HR S ++ P +E ++ L+ Sbjct: 70 YLRVSAP---EAG-LTALRKMLPGQEILILDELHRFSKAQQDFFLPILESGEITLLATTT 125 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 E PS + LSR + +RL E+L + RGA+ Sbjct: 126 ENPSFSVTRQLLSRLHV---------------------LRLRQLSREELVDVSHRGAREL 164 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 + + +E+ +A + G R LL + + RE Sbjct: 165 NVELEEESHRMLAAMAGGDARTLLNLLEYTAELPKDKRCPECLRE 209 >gi|169629937|ref|YP_001703586.1| hypothetical protein MAB_2853c [Mycobacterium abscessus ATCC 19977] gi|169241904|emb|CAM62932.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 451 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+E GQ ++ S L+ ++ + A + V+ GPPG GKTTLA +++ Sbjct: 32 MRPATLDEVVGQGHLLKQGSPLRRLVDGSGAAS-----VILYGPPGTGKTTLASLISGAT 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 G F + S + A ++ A++ N + VLFIDE+HR S ++ L A+E+ Sbjct: 87 GRRFEALSA-LSAGVKEVRAVIENSRTALAYHGQQTVLFIDEVHRFSKTQQDALLAAVEN 145 Query: 132 FQLDLMVG--EGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 146 RVVLLVAATTENPSFSVVAPLLSR 169 >gi|146282639|ref|YP_001172792.1| recombination factor protein RarA [Pseudomonas stutzeri A1501] gi|145570844|gb|ABP79950.1| ATPase, AAA family [Pseudomonas stutzeri A1501] Length = 441 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR +L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRAASLDEYVGQEHLLARGKPLREALEH--GALHSMVFWGPPGVGKTTLARLLAKVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAA-LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 134 IFIGATTENPSFELN 148 >gi|116493046|ref|YP_804781.1| recombination factor protein RarA [Pediococcus pentosaceus ATCC 25745] gi|116103196|gb|ABJ68339.1| Recombination protein MgsA [Pediococcus pentosaceus ATCC 25745] Length = 425 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+EE GQ K+ KA+ L ++ GPPG GKT++A ++ Sbjct: 8 MRPRTIEEIVGQQHLVGPGKIIDRMVKAKL--LSSMILYGPPGTGKTSIASAISGSTKYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DEIHRL ++ L P +E+ + +++G Sbjct: 66 FRILNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGNI-ILIGA 124 Query: 141 GPSARSVKIN 150 + IN Sbjct: 125 TTENPYININ 134 >gi|325833397|ref|ZP_08165846.1| ATPase, AAA family [Eggerthella sp. HGA1] gi|325485321|gb|EGC87790.1| ATPase, AAA family [Eggerthella sp. HGA1] Length = 446 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 60/123 (48%), Gaps = 22/123 (17%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTLEE GQ EA S L+ IE + L V+ GP G GKT+LA V+A Sbjct: 23 MRPRTLEEVVGQDEAVGPGSWLRNAIEQ-----DQLSSVILFGPAGTGKTSLAHVIAETT 77 Query: 79 GVNFRSTSGPVIAKAGDLAAL----------LTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 F S A G ++ L L+ R +LF+DEIHR + ++ L A Sbjct: 78 KATFVEVS----AIGGTVSDLRREIDAADKRLSAFGLRTILFVDEIHRFNRSQQDALLHA 133 Query: 129 MED 131 +ED Sbjct: 134 VED 136 >gi|145224348|ref|YP_001135026.1| recombination factor protein RarA [Mycobacterium gilvum PYR-GCK] gi|145216834|gb|ABP46238.1| Recombination protein MgsA [Mycobacterium gilvum PYR-GCK] Length = 446 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L+E GQ ++ S L+ IE + A + V+ GPPG GKTTLA ++++ Sbjct: 30 MRPANLDEVVGQDHLLKPNSPLRRLIEGSGAAS-----VILYGPPGTGKTTLASMISQAT 84 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 G F + S + D+A ++ VLFIDE+HR S ++ L A+E+ Sbjct: 85 GRRFEALSALAAGVKEVRAVIDVARQAAVRGEQTVLFIDEVHRFSKTQQDALLAAVENRV 144 Query: 134 LDLMVG--EGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 145 VLLVAATTENPSFSVVAPLLSR 166 >gi|315444680|ref|YP_004077559.1| recombination protein MgsA [Mycobacterium sp. Spyr1] gi|315262983|gb|ADT99724.1| Recombination protein MgsA [Mycobacterium sp. Spyr1] Length = 446 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L+E GQ ++ S L+ IE + A + V+ GPPG GKTTLA ++++ Sbjct: 30 MRPANLDEVVGQDHLLKPNSPLRRLIEGSGAAS-----VILYGPPGTGKTTLASMISQAT 84 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 G F + S + D+A ++ VLFIDE+HR S ++ L A+E+ Sbjct: 85 GRRFEALSALAAGVKEVRAVIDVARQAAVRGEQTVLFIDEVHRFSKTQQDALLAAVENRV 144 Query: 134 LDLMVG--EGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 145 VLLVAATTENPSFSVVAPLLSR 166 >gi|257792296|ref|YP_003182902.1| AAA ATPase central domain-containing protein [Eggerthella lenta DSM 2243] gi|317490217|ref|ZP_07948705.1| ATPase [Eggerthella sp. 1_3_56FAA] gi|257476193|gb|ACV56513.1| AAA ATPase central domain protein [Eggerthella lenta DSM 2243] gi|316910711|gb|EFV32332.1| ATPase [Eggerthella sp. 1_3_56FAA] Length = 446 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 60/123 (48%), Gaps = 22/123 (17%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTLEE GQ EA S L+ IE + L V+ GP G GKT+LA V+A Sbjct: 23 MRPRTLEEVVGQDEAVGPGSWLRNAIEQ-----DQLSSVILFGPAGTGKTSLAHVIAETT 77 Query: 79 GVNFRSTSGPVIAKAGDLAAL----------LTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 F S A G ++ L L+ R +LF+DEIHR + ++ L A Sbjct: 78 KATFVEVS----AIGGTVSDLRREIDAADKRLSAFGLRTILFVDEIHRFNRSQQDALLHA 133 Query: 129 MED 131 +ED Sbjct: 134 VED 136 >gi|153000734|ref|YP_001366415.1| recombination factor protein RarA [Shewanella baltica OS185] gi|151365352|gb|ABS08352.1| AAA ATPase central domain protein [Shewanella baltica OS185] Length = 443 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT+ E+ GQ L+ +EA +A + ++ GPPG GKTTLA+++A Sbjct: 19 MRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + D+ A + + R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKIN 150 + + +G S +IN Sbjct: 133 GTV-IFIGATTENPSFEIN 150 >gi|329926789|ref|ZP_08281197.1| ATPase, AAA family protein [Paenibacillus sp. HGF5] gi|328938989|gb|EGG35357.1| ATPase, AAA family protein [Paenibacillus sp. HGF5] Length = 435 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L+E+ GQ K+ A +A + + +L GPPG GKTTLA +++++ + Sbjct: 21 MRPSSLDEYIGQEHIIGPGKLLRRAIEA--DQVSSILLYGPPGCGKTTLAHIISQQTKGH 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + V A D+ ++ + + +LF+DE+HR + ++ L PA+E+ Sbjct: 79 FVRLNA-VEASVKDVREVIEQAQSNRSLYGTKTILFLDEVHRFNSSRQDALLPAVEN 134 >gi|257063510|ref|YP_003143182.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476] gi|256791163|gb|ACV21833.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476] Length = 446 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 8/116 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA---REL 78 +RPRTL+E GQ EA ++ AA A A+ L ++ GP G GKT++A ++A R + Sbjct: 23 MRPRTLDELKGQQEAVGE-GSWLHAAIA-ADTLSSIILFGPAGTGKTSIAHIIAETTRAI 80 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMED 131 V + G V ++AA L R +LF+DEIHR + ++ L A+E+ Sbjct: 81 FVEVSAIGGTVSDLRREIAAAEKRLYATGRRTILFVDEIHRFNRSQQDALLHAVEN 136 >gi|90407805|ref|ZP_01215982.1| putative ATPase protein [Psychromonas sp. CNPT3] gi|90311070|gb|EAS39178.1| putative ATPase protein [Psychromonas sp. CNPT3] Length = 439 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 28/221 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+ +++ GQ V L+ +EA A + ++ GPPG GKTTLA+++A Sbjct: 18 MRPKNFDQYIGQTHIVGVGKPLRKALEAGAAHS-----MILWGPPGTGKTTLAELIAHYC 72 Query: 79 GVNFRSTSGPVIAKAGDL-AALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDF 132 + S V A D+ AA+ ++ R +LF+DE+HR + ++ P +ED Sbjct: 73 DAHVERLSA-VTAGIKDIRAAIEIGKQNQSRGMRTLLFVDEVHRFNKTQQDAFLPFIEDG 131 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 L L +G S ++N + + RV LL +D E+ D Sbjct: 132 TL-LFIGATTENPSFELN----NALLSRARVYLLKKLSEDE--------IVEVIDQACHA 178 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 Q G K L ++A+ +G R A L + D A Sbjct: 179 QDGLKAHNLHFAQGVKEKLALLVQGDARKALNYLELLSDMA 219 >gi|167563730|ref|ZP_02356646.1| recombination factor protein RarA [Burkholderia oklahomensis EO147] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 38/287 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIREAMDQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V LL + +D E+ L Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYLLKSLTED-----------ELRQLLAR 174 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 Q A L GLA D+A + + G R LL + + A A TI ++A+ Sbjct: 175 AQDTA-LAGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAATSAGVTTIDAAFVESAMT 233 Query: 252 RLA--IDKMG---FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293 A DK G +DQ+ + ++ N G + G ++P+ Sbjct: 234 MNARRFDKGGDNFYDQISALHKSVRGSNPDGALYWFCRMLDGGADPK 280 >gi|126174375|ref|YP_001050524.1| recombination factor protein RarA [Shewanella baltica OS155] gi|125997580|gb|ABN61655.1| Recombination protein MgsA [Shewanella baltica OS155] Length = 443 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT+ E+ GQ L+ +EA +A + ++ GPPG GKTTLA+++A Sbjct: 19 MRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + D+ A + + R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKIN 150 + + +G S +IN Sbjct: 133 GTV-IFIGATTENPSFEIN 150 >gi|209963765|ref|YP_002296680.1| recombination factor protein RarA [Rhodospirillum centenum SW] gi|209957231|gb|ACI97867.1| ATPase, AAA family [Rhodospirillum centenum SW] Length = 432 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR LEE GQ + KAR L ++ GPPG GKTT+A+++A+ ++ Sbjct: 18 LRPRRLEEVVGQEHLLAPEGPVGRQVKARR--LTSMILWGPPGCGKTTIARLLAQSTDLH 75 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + + R +LFIDEIHR + ++ P +ED + Sbjct: 76 FEPLSA-VFSGVADLRKVFEAAKARRAMGQGTLLFIDEIHRFNRSQQDGFLPYVEDGTVT 134 Query: 136 LMVGEGPSARSVKIN 150 L VG S ++N Sbjct: 135 L-VGATTENPSFELN 148 >gi|218262943|ref|ZP_03477241.1| hypothetical protein PRABACTJOHN_02921 [Parabacteroides johnsonii DSM 18315] gi|218223042|gb|EEC95692.1| hypothetical protein PRABACTJOHN_02921 [Parabacteroides johnsonii DSM 18315] Length = 424 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ+++ +L Sbjct: 10 LRPKTLDDYIGQKHLVGPGAVLRKMIDAGRVPS-----FILWGPPGVGKTTLAQIISNKL 64 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S + + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 65 EAPFYTLSA-ISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVET 123 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS ++ LSR Sbjct: 124 GVVTLIGATTENPSFEVIRPLLSR 147 >gi|167752814|ref|ZP_02424941.1| hypothetical protein ALIPUT_01075 [Alistipes putredinis DSM 17216] gi|167659883|gb|EDS04013.1| hypothetical protein ALIPUT_01075 [Alistipes putredinis DSM 17216] Length = 423 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E+ GQ + F+E + + GPPG+GKTTLA++VA L Sbjct: 9 LRPRTLDEYIGQAHLVGQNGVFRKFLETGN-----VPSFILWGPPGVGKTTLAKIVATTL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S V + ++ +L + + +LFIDEIHR + ++ L A+E Sbjct: 64 KRPFYTLSA-VTSGVKEVREVLESARKQKFFDSKPPILFIDEIHRFNKSQQDSLLGAVEQ 122 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 123 GVVTLIGATTENPSFEVISPLLSR 146 >gi|229220692|ref|NP_820184.4| recombination factor protein RarA [Coxiella burnetii RSA 493] gi|30581044|sp|P39918|RARA_COXBU RecName: Full=Replication-associated recombination protein A Length = 440 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LEEF GQ K A + L ++ GPPG GKTTLA+++A++ G Sbjct: 14 MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIIAQKAGAR 71 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 S S V+A D+ ++ E +LF+DE+H + ++ P +E + L+ Sbjct: 72 VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 130 Query: 138 --VGEGPSARSVKINLSR 153 E PS + LSR Sbjct: 131 GATTENPSFQLNNALLSR 148 >gi|300937614|ref|ZP_07152423.1| replication-associated recombination protein A [Escherichia coli MS 21-1] gi|300457344|gb|EFK20837.1| replication-associated recombination protein A [Escherichia coli MS 21-1] Length = 428 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 20/167 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 1 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 56 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTR--VGLLTNPLQDR 173 + + E PS LSR + L + +T+ +LT ++D+ Sbjct: 116 ITFIGATTENPSFELNSALLSRARVYLLKSLSTKDIEQVLTQAMEDK 162 >gi|134098618|ref|YP_001104279.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL 2338] gi|291009604|ref|ZP_06567577.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL 2338] gi|133911241|emb|CAM01354.1| AAA ATPase, central region [Saccharopolyspora erythraea NRRL 2338] Length = 453 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 19/152 (12%) Query: 15 EDADISL-LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 E+A +++ +RPR+L+E GQ + + L+ +E A A VL GPPG GKTTL Sbjct: 25 ENAPLAVRMRPRSLDEVIGQKHLLGPGAPLRRLVEGA-----APASVLLYGPPGTGKTTL 79 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEE 123 A +V+ G F + S + + ++ A++ R VLFIDE+HR S ++ Sbjct: 80 ANLVSLATGRRFVALSA-LSSGVKEVRAVIEEARRRLGRTAEATVLFIDEVHRFSKTQQD 138 Query: 124 ILYPAMEDFQLDLMVG--EGPSARSVKINLSR 153 L A+ED + L+ E PS V LSR Sbjct: 139 ALLGAVEDRTVLLVAATTENPSFSVVAPLLSR 170 >gi|70731237|ref|YP_260978.1| recombination factor protein RarA [Pseudomonas fluorescens Pf-5] gi|68345536|gb|AAY93142.1| ATPase, AAA family [Pseudomonas fluorescens Pf-5] Length = 441 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 21/219 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ + K EA + AL ++F GPPG+GKTTLA+++A + Sbjct: 17 LRATNLDEYVGQQHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAEVSDAH 74 Query: 82 FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + I +A ++A R +LF+DE+HR + ++ P +ED L Sbjct: 75 FETVSAVLAGVKEIRQAVEIAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 + +G S ++N + + RV +L + + G ++ E +RG Sbjct: 134 IFIGATTENPSFELN----NALLSRARVYVLKSLDEAALGTLVQRALTE--------ERG 181 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 L+++DE + + G R LL D AE Sbjct: 182 LGKRQLSLSDEGFQMLLSAADGDGRRMLNLLENASDLAE 220 >gi|269123583|ref|YP_003306160.1| AAA ATPase central domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314909|gb|ACZ01283.1| AAA ATPase central domain protein [Streptobacillus moniliformis DSM 12112] Length = 395 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 28/207 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ +EF GQ L +E K + +F GP G GKTTLA+++A +LG ++ Sbjct: 16 RPKDFDEFYGQENIRKILFRMLENNKIISS-----IFFGPSGTGKTTLAKIIADKLGYDY 70 Query: 83 RSTSGPVIAKAGDLAAL---LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + + A D+ + N ++ +LF DEIHR + + ++ L +E+ + L+ Sbjct: 71 VYLNA-IKASKNDITQISLKAKNSVNKTLLFFDEIHRFNKLQQDSLLEDLENGNIILI-- 127 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 G + + +L+R A +RV L D ED+ I+++ AK Sbjct: 128 -GATTENPYFSLNR----ALLSRVLLFEFKKLDE------------EDIFNILEKIAKEE 170 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLL 226 L ++ I+M S G R + L Sbjct: 171 QLEYKEDILKYISMISDGDARTSINFL 197 >gi|229048107|ref|ZP_04193680.1| hypothetical protein bcere0027_40800 [Bacillus cereus AH676] gi|228723262|gb|EEL74634.1| hypothetical protein bcere0027_40800 [Bacillus cereus AH676] Length = 420 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 1 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 58 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 59 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 112 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193 TLI ATT +NP I R +E+ ED+ ++ Sbjct: 113 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEEDILIGLK 152 Query: 194 R-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 R G + VTDEA A S G R A L + F A IT E Sbjct: 153 RALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 212 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 213 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 257 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 258 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 284 >gi|154495040|ref|ZP_02034045.1| hypothetical protein PARMER_04086 [Parabacteroides merdae ATCC 43184] gi|154085590|gb|EDN84635.1| hypothetical protein PARMER_04086 [Parabacteroides merdae ATCC 43184] Length = 426 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ+++ +L Sbjct: 10 LRPKTLDDYIGQKHLVGPGAVLRKMIDAGRVPS-----FILWGPPGVGKTTLAQIISNKL 64 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S + + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 65 EAPFYTLSA-ISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVET 123 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS ++ LSR Sbjct: 124 GVVTLIGATTENPSFEVIRPLLSR 147 >gi|84499813|ref|ZP_00998101.1| ATPase, AAA family protein [Oceanicola batsensis HTCC2597] gi|84392957|gb|EAQ05168.1| ATPase, AAA family protein [Oceanicola batsensis HTCC2597] Length = 435 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 113/257 (43%), Gaps = 41/257 (15%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L + GQ + + L V + + +L ++F GPPG+GKTT+A+++A E Sbjct: 22 LRPRRLADVIGQEQVLGPEAPLGVMLASG-----SLSSLVFWGPPGVGKTTIARLLADET 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 + F S + + DL + R +LF+DEIHR + ++ P MED Sbjct: 77 DLEFIQISA-IFSGVADLKKVFEAAIQRRRAGQGTLLFVDEIHRFNKAQQDGFLPHMEDG 135 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 + L+VG S ++N A +R +L + +R G EDL+ ++ Sbjct: 136 TI-LLVGATTENPSFELN------AALLSRAQVL---VLERLG---------PEDLERLL 176 Query: 193 QRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 QR G L +TD A + + G R LL V A +T E L Sbjct: 177 QRAEAEIGQELELTDAARATLREMADGDGRA---LLNLVEQVAAWRVKAPLTPEELSTRL 233 Query: 251 LRLA--IDKMGFDQLDL 265 +R A DK G + +L Sbjct: 234 MRRAAKYDKSGEEHYNL 250 >gi|161830329|ref|YP_001597052.1| recombination factor protein RarA [Coxiella burnetii RSA 331] gi|161762196|gb|ABX77838.1| ATPase, AAA family [Coxiella burnetii RSA 331] Length = 440 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LEEF GQ K A + L ++ GPPG GKTTLA+++A++ G Sbjct: 14 MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIIAQKAGAR 71 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 S S V+A D+ ++ E +LF+DE+H + ++ P +E + L+ Sbjct: 72 VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 130 Query: 138 --VGEGPSARSVKINLSR 153 E PS + LSR Sbjct: 131 GATTENPSFQLNNALLSR 148 >gi|262041005|ref|ZP_06014226.1| replication-associated recombination protein A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041640|gb|EEW42690.1| replication-associated recombination protein A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 447 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + K A +A L ++ GPPG GKTTLA+V+AR + Sbjct: 20 MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYASAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A N+ R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGVKEIREAIERARQNRNVGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|182679007|ref|YP_001833153.1| ATPase central domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634890|gb|ACB95664.1| AAA ATPase central domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 435 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L+E GQ E A R A +L ++F GPPG GKTT+A+++A E Sbjct: 22 LRPRRLDEVAGQEHLLGP-----EGALTRLVAAGSLGSLIFWGPPGTGKTTVARLLANET 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 + F S + + +L + R +LF+DEIHR + ++ P MED Sbjct: 77 KLAFVQISA-IFSGVAELKKVFEEARARRRLGQGSLLFVDEIHRFNRAQQDSFLPVMEDG 135 Query: 133 QLDLM--VGEGPS 143 + L+ E PS Sbjct: 136 TVTLIGATTENPS 148 >gi|94498812|ref|ZP_01305358.1| ATPase [Sphingomonas sp. SKA58] gi|94421741|gb|EAT06796.1| ATPase [Sphingomonas sp. SKA58] Length = 439 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL + GQ E + I A A L ++F GPPG GKTT+++++A +G+ Sbjct: 26 LRPRTLGDVVGQ-EHLTGPDGAIGRMVA-AGRLSSIIFWGPPGTGKTTISRLLAHAVGMR 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + +D + +LF+DEIHR + ++ P +E+ + Sbjct: 84 FEPISA-VFSGVADLKKVFAAAKDHARHGEKTLLFVDEIHRFNRAQQDSFLPFVENGTVT 142 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 143 LVGATTENPS 152 >gi|325963405|ref|YP_004241311.1| recombination protein MgsA [Arthrobacter phenanthrenivorans Sphe3] gi|323469492|gb|ADX73177.1| Recombination protein MgsA [Arthrobacter phenanthrenivorans Sphe3] Length = 472 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 67/137 (48%), Gaps = 16/137 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEAL---DHVLFVGPPGLGKTTLAQVVA 75 +RPRTL+E GQ + S L+ A A ++ GPPG GKTTLA V+A Sbjct: 41 MRPRTLDEVVGQQHLLGQGSPLRQLAAGAGADTSGPAGPTSLILWGPPGTGKTTLAHVIA 100 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPA 128 R G F S + A D+ ++ L RD VLF+DEIHR + ++ L P Sbjct: 101 RGPGRKFVELSA-ITAGVKDVRRVMDEALTARDLYKTTTVLFLDEIHRFNKAQQDALLPG 159 Query: 129 MEDFQLDLMVG--EGPS 143 +E+ + L+ E PS Sbjct: 160 VENRWVVLVAATTENPS 176 >gi|29541759|gb|AAO90698.1| ATPase, AAA family [Coxiella burnetii RSA 493] Length = 427 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LEEF GQ K A + L ++ GPPG GKTTLA+++A++ G Sbjct: 1 MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIIAQKAGAR 58 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 S S V+A D+ ++ E +LF+DE+H + ++ P +E + L+ Sbjct: 59 VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 117 Query: 138 --VGEGPSARSVKINLSR 153 E PS + LSR Sbjct: 118 GATTENPSFQLNNALLSR 135 >gi|229815204|ref|ZP_04445540.1| hypothetical protein COLINT_02250 [Collinsella intestinalis DSM 13280] gi|229809214|gb|EEP44980.1| hypothetical protein COLINT_02250 [Collinsella intestinalis DSM 13280] Length = 441 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 17/128 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+++ GQ +A S L+ IE + L V+ GP G GKTTLA ++A Sbjct: 23 MRPSTLDDYVGQKKAVGPGSWLRSAIEH-----DVLSSVILYGPAGTGKTTLAHIIASHT 77 Query: 79 GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S V DL L + R +LFIDEIHR S ++ L A+E+ Sbjct: 78 KSEFVEVSA-VTGTVKDLRREIDEAKHRLMMFDRRTILFIDEIHRFSRSQQDALLHAVEN 136 Query: 132 FQLDLMVG 139 + +M+G Sbjct: 137 RTV-VMIG 143 >gi|148700412|gb|EDL32359.1| Werner helicase interacting protein 1, isoform CRA_b [Mus musculus] Length = 590 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +EA + + ++ GPPG GKTTLA ++A Sbjct: 248 MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 302 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 303 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 361 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 362 VECGTITLIGATTENPSFQVNAALLSRCRVI 392 >gi|306844109|ref|ZP_07476703.1| recombination factor protein RarA [Brucella sp. BO1] gi|306275552|gb|EFM57284.1| recombination factor protein RarA [Brucella sp. BO1] Length = 437 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E TGQ V + +L ++F GPPG GKTT+A+++A E + Sbjct: 23 LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLAGETDLA 80 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL AA + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKIN 150 +++G S ++N Sbjct: 139 ILIGATTENPSFELN 153 >gi|26349529|dbj|BAC38404.1| unnamed protein product [Mus musculus] Length = 568 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +EA + + ++ GPPG GKTTLA ++A Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 280 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 339 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 340 VECGTITLIGATTENPSFQVNAALLSRCRVI 370 >gi|257055554|ref|YP_003133386.1| recombination factor protein RarA [Saccharomonospora viridis DSM 43017] gi|256585426|gb|ACU96559.1| Recombination protein MgsA [Saccharomonospora viridis DSM 43017] Length = 457 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 20/135 (14%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ + L+ +E A + VL GPPG GKTTLA +V+ Sbjct: 38 MRPRSLDEVVGQQHLLGPGAPLRRLVEGATPAS-----VLLYGPPGTGKTTLANLVSTAT 92 Query: 79 GVNFRSTSGPVIAKAGDLAALLT--------NLEDRDVLFIDEIHRLSIIVEEILYPAME 130 G F + S + A ++ ++ +LED VLFIDE+HR S ++ L A+E Sbjct: 93 GRRFVALSA-LSAGVKEVRGVIEEARRRRQYDLED-TVLFIDEVHRFSKTQQDALLGAVE 150 Query: 131 DFQLDLMVG--EGPS 143 D + L+ E PS Sbjct: 151 DRTVLLVAATTENPS 165 >gi|154491485|ref|ZP_02031111.1| hypothetical protein PARMER_01094 [Parabacteroides merdae ATCC 43184] gi|154088460|gb|EDN87505.1| hypothetical protein PARMER_01094 [Parabacteroides merdae ATCC 43184] Length = 246 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E+ GQ + F+E + + GPPG+GKTTLA++VA L Sbjct: 9 LRPRTLDEYIGQAHLVGQNGVFRKFLETGNVPS-----FILWGPPGVGKTTLAKIVATTL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S V + ++ +L + + +LFIDEIHR + ++ L A+E Sbjct: 64 KRPFYTLSA-VTSGVKEVREVLESARKQKFFDSKPPILFIDEIHRFNKSQQDSLLGAVEQ 122 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 123 GVVTLIGATTENPSFEVISPLLSR 146 >gi|307295569|ref|ZP_07575405.1| AAA ATPase central domain protein [Sphingobium chlorophenolicum L-1] gi|306878608|gb|EFN09828.1| AAA ATPase central domain protein [Sphingobium chlorophenolicum L-1] Length = 440 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL + GQ E A R A L ++ GPPG GKTT+++++A + Sbjct: 27 LRPRTLADVVGQDHLTGP-----EGAIGRMVAAGRLSSIILWGPPGTGKTTISRLLADAV 81 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S V + DL + +D + +LF+DEIHR + ++ P +ED Sbjct: 82 GMRFEPISA-VFSGVADLKKVFAAAKDHARRGEKTLLFVDEIHRFNRAQQDSFLPFVEDG 140 Query: 133 QLDLM--VGEGPS 143 + L+ E PS Sbjct: 141 TVTLVGATTENPS 153 >gi|206969731|ref|ZP_03230685.1| ATPase, AAA family [Bacillus cereus AH1134] gi|228941567|ref|ZP_04104116.1| hypothetical protein bthur0008_42040 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974497|ref|ZP_04135064.1| hypothetical protein bthur0003_42500 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981091|ref|ZP_04141392.1| hypothetical protein bthur0002_42520 [Bacillus thuringiensis Bt407] gi|206735419|gb|EDZ52587.1| ATPase, AAA family [Bacillus cereus AH1134] gi|228778632|gb|EEM26898.1| hypothetical protein bthur0002_42520 [Bacillus thuringiensis Bt407] gi|228785214|gb|EEM33226.1| hypothetical protein bthur0003_42500 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818123|gb|EEM64199.1| hypothetical protein bthur0008_42040 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942181|gb|AEA18077.1| recombination factor protein RarA [Bacillus thuringiensis serovar chinensis CT-43] Length = 428 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 86/330 (26%), Positives = 130/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VTDEA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|222148826|ref|YP_002549783.1| recombination factor protein RarA [Agrobacterium vitis S4] gi|221735812|gb|ACM36775.1| ATPase AAA family protein [Agrobacterium vitis S4] Length = 435 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L + TGQ V A + +L ++F GPPG GKTT+A++++ E + Sbjct: 23 LRPKALSDVTGQDHLTGQDGVL--ARMIASGSLGSMIFWGPPGTGKTTVARLLSGEADLA 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + ++ P MED + Sbjct: 81 FEQISA-IFSGVADLKRVFEGARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 139 ILVGATTENPSFELN 153 >gi|332292456|ref|YP_004431065.1| AAA ATPase central domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170542|gb|AEE19797.1| AAA ATPase central domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 425 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LE++ Q +A KA + ++ GPPG+GKTTLA +++ E Sbjct: 9 LRPKKLEDYLSQQHLVGPNGSLQQALKAGI--IPSLILWGPPGIGKTTLATIISEESNRP 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VI KA L T + +LFIDEIHR S ++ L A+E Sbjct: 67 FYTLSAINSGVKDIRDVIDKAKQSGGLFT--QKNPILFIDEIHRFSKSQQDSLLGAVERG 124 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147 >gi|295706706|ref|YP_003599781.1| ATPase, AAA family [Bacillus megaterium DSM 319] gi|294804365|gb|ADF41431.1| ATPase, AAA family [Bacillus megaterium DSM 319] Length = 425 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L++ GQ K+ KA L ++ GPPG+GKTT+A +A+ Sbjct: 10 MRPTHLDDVIGQQHLVGKDKMIYRMVKANH--LSSMILYGPPGVGKTTIATAIAKTTNTA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 FR + V K ++ A + + +L +DE+HRL ++ L P +E+ Sbjct: 68 FRQLNAVVNNKKDMEIVAEEAKMSGKVILLLDEVHRLDKAKQDFLLPYLEN 118 >gi|258647387|ref|ZP_05734856.1| ATPase, AAA family [Prevotella tannerae ATCC 51259] gi|260852753|gb|EEX72622.1| ATPase, AAA family [Prevotella tannerae ATCC 51259] Length = 422 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L+++ GQ V + L+ I+A + + + GPPG+GKTTLA++VA + Sbjct: 8 LRPTSLDDYVGQQHLVGPGAVLRNMIDAGR-----ITSFILWGPPGVGKTTLARIVATQF 62 Query: 79 GVNFRSTSGPVIAKAGDL------AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ AA D+ +LFIDEIHR S ++ L A+E+ Sbjct: 63 KAPFYTLSA-VNSGVKDVRDVIEKAAKNRFFSDQSPILFIDEIHRFSKSQQDSLLAAVEN 121 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS ++ LSR Sbjct: 122 GTITLIGATTENPSFEVIRPLLSR 145 >gi|254821817|ref|ZP_05226818.1| recombination factor protein RarA [Mycobacterium intracellulare ATCC 13950] Length = 454 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 38/184 (20%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + S L+ +E + + + GPPG GKTTLA ++++ Sbjct: 35 MRPASLDEVVGQDHLLAPGSPLRRLVEGS-----GVASAILYGPPGSGKTTLAALISQAT 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A D+ A++ ++ VLFIDE+HR S ++ L A+E+ Sbjct: 90 GRRFEALSA-LSAGVKDVRAVIEKARTALLHGEQTVLFIDEVHRFSKTQQDALLSAVENR 148 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + L+ E PS F+++A PL R I ++L +D++T Sbjct: 149 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLSADDIRT 187 Query: 191 IVQR 194 +VQR Sbjct: 188 VVQR 191 >gi|212212420|ref|YP_002303356.1| recombination factor protein RarA [Coxiella burnetii CbuG_Q212] gi|212010830|gb|ACJ18211.1| ATPase, AAA family [Coxiella burnetii CbuG_Q212] Length = 427 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LEEF GQ K A + L ++ GPPG GKTTLA+++A++ G Sbjct: 1 MRPGSLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIMAQKAGAR 58 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 S S V+A D+ ++ E +LF+DE+H + ++ P +E + L+ Sbjct: 59 VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 117 Query: 138 --VGEGPSARSVKINLSR 153 E PS + LSR Sbjct: 118 GATTENPSFQLNNALLSR 135 >gi|148380525|ref|YP_001255066.1| ATPase, AAA family [Clostridium botulinum A str. ATCC 3502] gi|153933551|ref|YP_001384812.1| recombination factor protein RarA [Clostridium botulinum A str. ATCC 19397] gi|153936060|ref|YP_001388283.1| recombination factor protein RarA [Clostridium botulinum A str. Hall] gi|148290009|emb|CAL84128.1| putative ATPase [Clostridium botulinum A str. ATCC 3502] gi|152929595|gb|ABS35095.1| ATPase, AAA family [Clostridium botulinum A str. ATCC 19397] gi|152931974|gb|ABS37473.1| ATPase, AAA family [Clostridium botulinum A str. Hall] Length = 416 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 26/257 (10%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ LE+F GQ S K K ++ + + +F GPPG GKTTLA ++A + Sbjct: 7 LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64 Query: 81 NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + I ++ + + +L + VL+IDE+ + ++ L +ED ++ L Sbjct: 65 KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124 Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186 + E P K LSR + R ++ N L D+ GI I+ F +E Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYTFESLE 183 Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237 + I Q + + LAV I + +A +R E A Sbjct: 184 YISEICQGDYRKAYNILELAVNSHCGFNIEINLDYIESLAQSNIRADATGDEYYNILSAF 243 Query: 238 AKTITREIADAALLRLA 254 K+I ADAA+ LA Sbjct: 244 QKSIRGSDADAAVHYLA 260 >gi|221068782|ref|ZP_03544887.1| AAA ATPase central domain protein [Comamonas testosteroni KF-1] gi|220713805|gb|EED69173.1| AAA ATPase central domain protein [Comamonas testosteroni KF-1] Length = 446 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 132/327 (40%), Gaps = 60/327 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL E GQ L++ E+ + + + GPPG+GKTT+A+++A Sbjct: 21 LRPRTLAEVIGQQHVLGEGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMADAF 75 Query: 79 GVNFRSTSGPVIAKAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F S S V+ D+ AA L+ R ++F+DE+HR + ++ P +E Sbjct: 76 DAQFISISA-VLGGVKDIREAVEQAQAARSGLLQQRTIVFVDEVHRFNKSQQDAFLPHVE 134 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDL 188 FT I ATT + + L R + + L +DL Sbjct: 135 S--------------------GLFTFIGATTENPSFEVNSALLSRAAVYV-LQSLTTDDL 173 Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 K IV + + + + DEA + + G R L + AE A ++IT D Sbjct: 174 KQIVAKAQVIKAVPTIEDEALDRLIAYADGDARRLLNTLETLSITAEQAGVESIT----D 229 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 LL++ ++M R GG +TISA R + D + + Sbjct: 230 GWLLKVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWFCRM 276 Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332 PR R ++ +AW+ +G+ P Sbjct: 277 LDGGADPRYLARRIVRMAWEDIGLADP 303 >gi|83645244|ref|YP_433679.1| recombination factor protein RarA [Hahella chejuensis KCTC 2396] gi|83633287|gb|ABC29254.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Hahella chejuensis KCTC 2396] Length = 448 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 79/324 (24%), Positives = 133/324 (41%), Gaps = 47/324 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR ++E+ GQ K +A + + L V+F GPPG+GKT+LA++VA G Sbjct: 24 MRPRVIDEYIGQTHLLDADKPLRKALER--DQLHSVIFWGPPGVGKTSLARLVAGYTGAE 81 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + S I + A + + ++F+DE+HR + ++ P +E+ Sbjct: 82 FITLSAVQSGVKEIREVSQRARANSQSGRKTIVFVDEVHRFNKSQQDAFLPYVEE----- 136 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 F I ATT L N L R + L I+DL ++QR Sbjct: 137 ---------------GAFVFIGATTENPSFELNNALLSRARV-YPLKPLTIDDLTALLQR 180 Query: 195 -------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI-TREIA 246 G T + + IA + G R A +L + D A+ I +RE+ Sbjct: 181 ALSDAENGLGQTSWSYDADLLRMIAEAANGDARQALNILETMSDLADPGEQGGILSRELL 240 Query: 247 DAALLRLAI---DKMG---FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300 A+++++++ DK G +DQ+ + ++ N G + G +P ++ Sbjct: 241 -ASVMQVSLKRFDKGGDAFYDQISALHKSVRGSNPDGALYWFARMLNGGCDPLYVARRVV 299 Query: 301 EPYMIQQGFIQRTPRGRLLMPIAW 324 M + PRG L AW Sbjct: 300 R--MASEDIGNADPRGLDLALSAW 321 >gi|300361432|ref|ZP_07057609.1| AAA family ATPase [Lactobacillus gasseri JV-V03] gi|300354051|gb|EFJ69922.1| AAA family ATPase [Lactobacillus gasseri JV-V03] Length = 432 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ N K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 8 MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + ++A+ G ++ + +L +DEIHRL ++ L P +E Sbjct: 66 FRKLNAATDTKKDLQIVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLE 115 >gi|254504344|ref|ZP_05116495.1| ATPase, AAA family protein [Labrenzia alexandrii DFL-11] gi|222440415|gb|EEE47094.1| ATPase, AAA family protein [Labrenzia alexandrii DFL-11] Length = 434 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE+ GQ K R L ++F GPPG GKTT+A+++A E + Sbjct: 22 MRPARLEDVVGQDHLLGPEGTLSRMLKTRT--LGSLIFWGPPGTGKTTIARLLANETDLA 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + ++ P MED + Sbjct: 80 FEQISA-IFSGVADLKKVFEAARARRMGGRATLLFVDEIHRFNRAQQDSFLPVMEDGTIT 138 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 139 LVGATTENPS 148 >gi|218700590|ref|YP_002408219.1| recombination factor protein RarA [Escherichia coli IAI39] gi|218370576|emb|CAR18383.1| recombination protein [Escherichia coli IAI39] Length = 447 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 20/167 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTR--VGLLTNPLQDR 173 + + E PS LSR + L + +T+ +LT ++D+ Sbjct: 135 ITFIGATTENPSFELNSALLSRARVYLLKSLSTKDIEQVLTQAMEDK 181 >gi|294501359|ref|YP_003565059.1| ATPase [Bacillus megaterium QM B1551] gi|294351296|gb|ADE71625.1| ATPase, AAA family [Bacillus megaterium QM B1551] Length = 425 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L++ GQ K+ KA L ++ GPPG+GKTT+A +A+ Sbjct: 10 MRPTHLDDVIGQQHLVGKDKMIYRMVKANH--LSSMILYGPPGVGKTTIATAIAKTTNTA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 FR + V K ++ A + + +L +DE+HRL ++ L P +E+ Sbjct: 68 FRQLNAVVNNKKDMEIVAEEAKMSGKVILLLDEVHRLDKAKQDFLLPYLEN 118 >gi|188579618|ref|YP_001923063.1| recombination factor protein RarA [Methylobacterium populi BJ001] gi|179343116|gb|ACB78528.1| AAA ATPase central domain protein [Methylobacterium populi BJ001] Length = 440 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E GQ +R+ L ++F GPPG GKTT+A+++A E ++ Sbjct: 25 LRPRRLSEVVGQEHLTGPDGALTRLLASRS--LGSLVFWGPPGTGKTTVARLLAHETELH 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + + P MED + Sbjct: 83 FEQISA-IFSGIADLRKVFEAARKRRATGQGTLLFVDEIHRFNRSQLDAFLPVMEDGTVT 141 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 142 LVGATTENPS 151 >gi|30022475|ref|NP_834106.1| recombination factor protein RarA [Bacillus cereus ATCC 14579] gi|218235142|ref|YP_002369209.1| recombination factor protein RarA [Bacillus cereus B4264] gi|229129680|ref|ZP_04258648.1| hypothetical protein bcere0015_41220 [Bacillus cereus BDRD-Cer4] gi|29898033|gb|AAP11307.1| ATPase, AAA family [Bacillus cereus ATCC 14579] gi|218163099|gb|ACK63091.1| ATPase, AAA family [Bacillus cereus B4264] gi|228653797|gb|EEL09667.1| hypothetical protein bcere0015_41220 [Bacillus cereus BDRD-Cer4] Length = 428 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193 TLI ATT +NP I R +E+ ED+ ++ Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEEDILIGLK 160 Query: 194 R-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 R G + VTDEA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|85059088|ref|YP_454790.1| recombination factor protein RarA [Sodalis glossinidius str. 'morsitans'] gi|84779608|dbj|BAE74385.1| putative ATPase protein [Sodalis glossinidius str. 'morsitans'] Length = 447 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLEE+ GQ + K K L ++ GPPG GKTTLA+++AR V+ Sbjct: 20 MRPSTLEEYIGQSHLLAADKPLPRVIKN--GQLHSMILWGPPGTGKTTLAELIARYGQVD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A L + R +LF+DE+HR + ++ P +E+ + Sbjct: 78 VERLSAVTSGIKEIREAIERACLNRDAGRRTILFVDEVHRFNKGQQDAFLPHIEEGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|320451464|ref|YP_004203560.1| AAA family ATPase [Thermus scotoductus SA-01] gi|320151633|gb|ADW23011.1| ATPase, AAA family [Thermus scotoductus SA-01] Length = 415 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 13/129 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR+L+E GQ L+ +EA + L ++ GPPG GKTTLAQ++A + Sbjct: 11 LRPRSLDEVLGQPHLTGPKGLLRRMLEAKR-----LSSMVLFGPPGTGKTTLAQILAEGV 65 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 G F S V A ++ A++ E VLF+DE+HR + ++ L P +E L L Sbjct: 66 GKPFLRLSA-VEAGVKEVRAVVERARREGGLVLFLDEVHRFNRTQQDALLPHLESGLLTL 124 Query: 137 M--VGEGPS 143 + E P+ Sbjct: 125 IGATAENPA 133 >gi|23015800|ref|ZP_00055567.1| COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [Magnetospirillum magnetotacticum MS-1] Length = 430 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 19/148 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP L+E GQ + A + L + A + L V+ GPPG GKTT+A+++A ++ Sbjct: 18 LRPGALDEVVGQGHLLAATAPLGRMLAAGR-----LASVILWGPPGCGKTTIARLLAEKV 72 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S V + DL + E R +LF+DEIHR + ++ P +E+ Sbjct: 73 GLYFEPLSA-VFSGVADLRKVFDAAEKRKQTGRSTLLFVDEIHRFNRAQQDGFLPYVENG 131 Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157 + ++VG S ++N LSR ++ Sbjct: 132 TV-VLVGATTENPSFELNGALLSRCQVL 158 >gi|297845668|ref|XP_002890715.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] gi|297336557|gb|EFH66974.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] Length = 525 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 38/170 (22%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL++ GQ S + A K+ L ++F GPPG GKT++A+ + Sbjct: 107 MRPRTLDDVVGQEHLLSPASLLRSAIKS--NRLPSIVFWGPPGTGKTSIAKSL------- 157 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----------------RDVLFIDEIHRLSIIVEEI 124 S+ P + + L+A+ + ++D R VLF+DE+HR + ++ Sbjct: 158 INSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGKKRTVLFMDEVHRFNKSQQDS 217 Query: 125 LYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171 P +ED + L +G E PS + LSR RV L NPL+ Sbjct: 218 FLPVIEDGSI-LFIGATTENPSFHLITPLLSR-------CRV-LTLNPLK 258 >gi|291085633|ref|ZP_06353556.2| replication-associated recombination protein A [Citrobacter youngae ATCC 29220] gi|291070482|gb|EFE08591.1| replication-associated recombination protein A [Citrobacter youngae ATCC 29220] Length = 428 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 1 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 56 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 116 ITFIGATTENPS 127 >gi|330826232|ref|YP_004389535.1| AAA ATPase central domain-containing protein [Alicycliphilus denitrificans K601] gi|329311604|gb|AEB86019.1| AAA ATPase central domain protein [Alicycliphilus denitrificans K601] Length = 439 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 84/327 (25%), Positives = 134/327 (40%), Gaps = 60/327 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL E GQ L++ E+ + + + GPPG+GKTT+A+++A Sbjct: 16 LRPRTLGEVVGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMAEAF 70 Query: 79 GVNFRSTSGPVIAKAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F S S V+ D+ +A + R ++F+DE+HR + ++ P +E Sbjct: 71 DAQFISISA-VLGGVKDIRDAVQLAESAAGGLMPQRTIVFVDEVHRFNKSQQDAFLPHVE 129 Query: 131 D--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 F E PS LSR AA + LT+ +DL Sbjct: 130 SGLFTFVGATTENPSFEVNSALLSR----AAVYVLQPLTS-----------------DDL 168 Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 K IV R + L A+ +EA + + G R RLL + + V + I D Sbjct: 169 KQIVVRAQDIQALPAIENEALERLIAYADGDAR---RLLNTLETLS-VTAGQAKVETITD 224 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 A LL++ ++M R GG +TISA R + D ++++ Sbjct: 225 AWLLQVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRM 271 Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332 PR R ++ +AW+ +G+ P Sbjct: 272 LDGGADPRYMARRIVRMAWEDIGLADP 298 >gi|300311231|ref|YP_003775323.1| recombination factor RarA protein [Herbaspirillum seropedicae SmR1] gi|300074016|gb|ADJ63415.1| recombination factor RarA protein [Herbaspirillum seropedicae SmR1] Length = 434 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E GQ L++ ++ K + ++F GPPG+GKTTLA++ A Sbjct: 17 LRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTATAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V + D+ A + E +LF+DEIHR + ++ L P E Sbjct: 72 ECEFIALSA-VFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQDALLPYAE 128 >gi|116629863|ref|YP_815035.1| recombination factor protein RarA [Lactobacillus gasseri ATCC 33323] gi|311110500|ref|ZP_07711897.1| ATPase, AAA family [Lactobacillus gasseri MV-22] gi|116095445|gb|ABJ60597.1| Recombination protein MgsA [Lactobacillus gasseri ATCC 33323] gi|311065654|gb|EFQ45994.1| ATPase, AAA family [Lactobacillus gasseri MV-22] Length = 432 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ N K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 8 MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + ++A+ G ++ + +L +DEIHRL ++ L P +E Sbjct: 66 FRKLNAATDTKKDLQIVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLE 115 >gi|113460956|ref|YP_719023.1| recombination factor protein RarA [Haemophilus somnus 129PT] gi|112822999|gb|ABI25088.1| Recombination protein MgsA [Haemophilus somnus 129PT] Length = 446 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 26/169 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVAR 76 +RP+TL+++ GQ + I A K +A+++ ++F GPPG GKTTLA+++A+ Sbjct: 20 MRPQTLKQYCGQ-------EHLIGAGKPLYKAIENGHIHSMIFWGPPGTGKTTLAEIIAQ 72 Query: 77 ELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++ S I ++ + A + + +LF+DE+HR + ++ P +E+ Sbjct: 73 QIHAQVERISAVTAGVKEIRESIERAKQNRLMGQQTILFVDEVHRFNKTQQDAFLPHIEN 132 Query: 132 FQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQD 172 + + +G S ++N LSR + L TT V +L N +QD Sbjct: 133 GTI-IFIGATTENPSFELNNALLSRVKVYILKPLTTSNIVTVLQNAIQD 180 >gi|238853694|ref|ZP_04644062.1| recombination factor protein RarA [Lactobacillus gasseri 202-4] gi|238833732|gb|EEQ26001.1| recombination factor protein RarA [Lactobacillus gasseri 202-4] Length = 432 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ N K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 8 MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + ++A+ G ++ + +L +DEIHRL ++ L P +E Sbjct: 66 FRKLNAATDTKKDLQIVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLE 115 >gi|150025417|ref|YP_001296243.1| recombination factor protein RarA [Flavobacterium psychrophilum JIP02/86] gi|149771958|emb|CAL43432.1| Putative AAA family ATPase [Flavobacterium psychrophilum JIP02/86] Length = 425 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 17/144 (11%) Query: 22 LRPRTLEEFTGQVEAC-SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP+ L+++ Q N + + AK +L +F GPPG GKTTL+Q++A+E Sbjct: 9 IRPQNLQDYISQSHLVGQNGSLTHQIAKGIIPSL---IFWGPPGTGKTTLSQIIAQESKR 65 Query: 81 NFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S VI KA L T +LFIDEIHR S ++ L A+E Sbjct: 66 PFYILSAINSGVKDIRDVIEKAKQSGGLFTT--KNPILFIDEIHRFSKSQQDSLLAAVEK 123 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 124 GWITLIGATTENPSFEVIPALLSR 147 >gi|300784614|ref|YP_003764905.1| ATPase [Amycolatopsis mediterranei U32] gi|299794128|gb|ADJ44503.1| putative ATPase [Amycolatopsis mediterranei U32] Length = 458 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 70/144 (48%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L E GQ + + L+ +E A A VL GPPG GKTTLA +V+ Sbjct: 41 MRPRSLGEVVGQQHLLREGAPLRRLVEGA-----APASVLLYGPPGTGKTTLANLVSIAT 95 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 G F + S + A ++ ++ R VLFIDE+HR S ++ L A+ED Sbjct: 96 GRRFVAMSA-LSAGVKEVRGVIEEARRRRQYNAENTVLFIDEVHRFSKTQQDALLGAVED 154 Query: 132 FQLDLMVG--EGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 155 RTVLLVAATTENPSFSVVSPLLSR 178 >gi|268319729|ref|YP_003293385.1| hypothetical protein FI9785_1258 [Lactobacillus johnsonii FI9785] gi|262398104|emb|CAX67118.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785] Length = 431 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ N K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 8 MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + ++A+ G ++ + +L +DEIHRL ++ L P +E Sbjct: 66 FRKLNAATDTKKDLQIVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLE 115 >gi|226949925|ref|YP_002805016.1| ATPase, AAA family [Clostridium botulinum A2 str. Kyoto] gi|226840930|gb|ACO83596.1| ATPase, AAA family [Clostridium botulinum A2 str. Kyoto] Length = 416 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 26/257 (10%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ LE+F GQ S K K ++ + + +F GPPG GKTTLA ++A + Sbjct: 7 LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64 Query: 81 NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + I ++ + + +L + VL+IDE+ + ++ L +ED ++ L Sbjct: 65 KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124 Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186 + E P K LSR + R ++ N L D+ GI I+ F +E Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYTFESLE 183 Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237 + I Q + + LAV I + +A +R E A Sbjct: 184 YISEICQGDYRKAYNILELAVNSHCGFNIEINLDYIESLAQSNIRADATGDEYYNILSAF 243 Query: 238 AKTITREIADAALLRLA 254 K+I ADAA+ LA Sbjct: 244 QKSIRGSDADAAVHYLA 260 >gi|148553805|ref|YP_001261387.1| recombination factor protein RarA [Sphingomonas wittichii RW1] gi|148498995|gb|ABQ67249.1| Recombination protein MgsA [Sphingomonas wittichii RW1] Length = 481 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL + GQ E A R A L ++ GPPG GKTT+A+++A + Sbjct: 68 LRPRTLADVIGQEHLTGP-----EGAIGRMVAAGRLSSLVLWGPPGTGKTTIARLLADAV 122 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S V + DL + + R +LF+DEIHR + ++ P +ED Sbjct: 123 GLRFAPVSA-VFSGVADLKKIFAEAREHARIGTRTLLFVDEIHRFNRAQQDSFLPYVEDG 181 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 182 TV-VLVGATTENPSFELN 198 >gi|261405433|ref|YP_003241674.1| AAA ATPase central domain-containing protein [Paenibacillus sp. Y412MC10] gi|261281896|gb|ACX63867.1| AAA ATPase central domain protein [Paenibacillus sp. Y412MC10] Length = 435 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 10/117 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L+E+ GQ K+ A +A + + +L GPPG GKTTLA +++++ + Sbjct: 21 MRPSSLDEYIGQEHIIGPGKLLRRAIEA--DQVSSILLYGPPGCGKTTLAHIISQQTKGH 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + V A D+ ++ + + +LF+DE+HR + ++ L PA+E+ Sbjct: 79 FVRLNA-VEATVKDVREVIEQAQSNRSLYGTKTILFLDEVHRFNSSRQDALLPAVEN 134 >gi|68536116|ref|YP_250821.1| recombination factor protein RarA [Corynebacterium jeikeium K411] gi|68263715|emb|CAI37203.1| conserved hypothetical protein [Corynebacterium jeikeium K411] Length = 464 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 17/151 (11%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ + S L+ I+ + V+ GPPG GKTT+A ++++ Sbjct: 41 MRPRSLDEVVGQDKVLGPGSPLRRLIDGHGDTS-----VILYGPPGTGKTTIASLISQVS 95 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + + ++ A++ L + VLFIDE+HR S ++ L A+E+ Sbjct: 96 GRRFEALSA-LNSGVKEVRAIIEQARKRLVLGEHTVLFIDEVHRFSKTQQDALLSAVENR 154 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATT 161 + L+ E PS V LSR L+ +T Sbjct: 155 TVLLVAATTENPSFSVVSPLLSRSLLVQLST 185 >gi|33860637|ref|NP_892198.1| recombination factor protein RarA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633579|emb|CAE18536.1| putative ATPase, AAA family [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 429 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 16/120 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L++F GQ + + A + + +++F GPPG+GKTTL ++++ N Sbjct: 23 LRPKNLDDFFGQESILGHDSLLRNAI--LNDKVGNIIFSGPPGVGKTTLIEIISS----N 76 Query: 82 FRST---SGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 RS+ V++ +L + N ++R +LFIDE+HR + + ++ L P++E+ Sbjct: 77 TRSSLIKLNAVLSSIKELRTEIANAKERLRSSNRKTILFIDEVHRFTSVQQDALLPSIEN 136 >gi|126439052|ref|YP_001060001.1| recombination factor protein RarA [Burkholderia pseudomallei 668] gi|126218545|gb|ABN82051.1| replication-associated recombination protein A [Burkholderia pseudomallei 668] Length = 436 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 58/326 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + +D +L+ + Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 171 Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 ++R L GLA D+A + + G R LL + + A A TI DAA Sbjct: 172 LKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 226 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 + A +TM AR F GG + ISA R + D ++ + Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273 Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332 P+ R ++ +AW+ +G+ P Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299 >gi|312897412|ref|ZP_07756836.1| recombination factor protein RarA [Megasphaera micronuciformis F0359] gi|310621473|gb|EFQ05009.1| recombination factor protein RarA [Megasphaera micronuciformis F0359] Length = 443 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 20/153 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP+T+++ GQ L+ FIE + + ++F GPPG+GKTTLA+V+A Sbjct: 20 IRPKTIDDIIGQGHLLGEGRILRRFIEN-----DTVPSMIFWGPPGVGKTTLARVIAGHT 74 Query: 76 RELGVNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + V+F + +G + I + A T ++ +LF+DEIHR + ++ P +E Sbjct: 75 KAAFVDFSAVTGGIKEIRQIMQKADENTRYGEKTILFVDEIHRFNKAQQDAFLPFVEKGS 134 Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAAT 160 + +++G S +IN LSR F L A T Sbjct: 135 I-VLIGATTENPSFEINGALLSRCKVFVLHALT 166 >gi|262066993|ref|ZP_06026605.1| replication-associated recombination protein A [Fusobacterium periodonticum ATCC 33693] gi|291379280|gb|EFE86798.1| replication-associated recombination protein A [Fusobacterium periodonticum ATCC 33693] Length = 174 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 18/127 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77 LRP+ L++F GQ K+ + R +L + +F GPPG GK++L ++++ Sbjct: 18 LRPKNLDDFVGQE------KLLGKDGVIRRLILNSSLSNSIFYGPPGCGKSSLGEIISNT 71 Query: 78 LGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAME 130 L NF + A D+ ++ N+E R +LF+DEIHR + ++ L E Sbjct: 72 LDCNFEKLNATT-ASVSDIRTMVETAKRNIELYNKRTILFLDEIHRFNKNQQDALLSYTE 130 Query: 131 DFQLDLM 137 D L L+ Sbjct: 131 DGTLTLI 137 >gi|170717512|ref|YP_001784604.1| recombination factor protein RarA [Haemophilus somnus 2336] gi|168825641|gb|ACA31012.1| AAA ATPase central domain protein [Haemophilus somnus 2336] Length = 446 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 26/169 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVAR 76 +RP+TL+++ GQ + I A K +A+++ ++F GPPG GKTTLA+++A+ Sbjct: 20 MRPQTLKQYCGQ-------EHLIGAGKPLYKAIENGHIHSMIFWGPPGTGKTTLAEIIAQ 72 Query: 77 ELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++ S I ++ + A + + +LF+DE+HR + ++ P +E+ Sbjct: 73 QIHAQVERISAVTAGVKEIRESIERAKQNRLMGQQTILFVDEVHRFNKTQQDAFLPHIEN 132 Query: 132 FQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQD 172 + + +G S ++N LSR + L TT V +L N +QD Sbjct: 133 GTI-IFIGATTENPSFELNNALLSRVKVYILKPLTTSNIVTVLQNAIQD 180 >gi|284991584|ref|YP_003410138.1| AAA ATPase central domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284064829|gb|ADB75767.1| AAA ATPase central domain protein [Geodermatophilus obscurus DSM 43160] Length = 445 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 72/151 (47%), Gaps = 22/151 (14%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ + L+ +EA E + VL+ GPPG GKTTLA V++ Sbjct: 25 MRPRSLDEVVGQSHLLGPRAPLRRLVEAD----EPMSLVLY-GPPGTGKTTLAHVISLAT 79 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S VIA A LT R VLFIDE+HR S ++ L A+ Sbjct: 80 KRQFVQLSALDAGVKEVRAVIASA---KRELTYAGRRTVLFIDEVHRFSKTQQDSLLSAV 136 Query: 130 EDFQLDLMVG--EGPSARSVKINLSRFTLIA 158 ED + L+ E P V LSR ++A Sbjct: 137 EDRIVSLIAATTENPFFSVVSPLLSRSLVLA 167 >gi|168180541|ref|ZP_02615205.1| ATPase, AAA family [Clostridium botulinum NCTC 2916] gi|182668511|gb|EDT80490.1| ATPase, AAA family [Clostridium botulinum NCTC 2916] Length = 416 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 26/257 (10%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ LE+F GQ S K K ++ + + +F GPPG GKTTLA ++A + Sbjct: 7 LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64 Query: 81 NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + I ++ + + +L + VL+IDE+ + ++ L +ED ++ L Sbjct: 65 KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124 Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186 + E P K LSR + R ++ N L D+ GI I+ F +E Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYTFESLE 183 Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237 + I Q + + LAV I + +A +R E A Sbjct: 184 YISEICQGDYRKAYNILELAVNSHCGFNIEINLDYIESLAQSNIRADATGDEYYNILSAF 243 Query: 238 AKTITREIADAALLRLA 254 K+I ADAA+ LA Sbjct: 244 QKSIRGSDADAAVHYLA 260 >gi|313680216|ref|YP_004057955.1| recombination protein mgsa [Oceanithermus profundus DSM 14977] gi|313152931|gb|ADR36782.1| Recombination protein MgsA [Oceanithermus profundus DSM 14977] Length = 435 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E GQ L+V +E + L ++F GPPG GKTTLA+++A + Sbjct: 14 LRPRTLDEVVGQEHLTGPGKPLRVMLENGR-----LASMIFWGPPGTGKTTLARILANGV 68 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S V A ++ + ++ VLF+DE+HR + ++ L P +E Sbjct: 69 DARFVAMSA-VSAGVKEVREAVKQAQEAVSAGRPTVLFLDEVHRFNKAQQDALLPHVESG 127 Query: 133 QLDLM--VGEGPS 143 L L+ E PS Sbjct: 128 LLTLIGATTENPS 140 >gi|83949758|ref|ZP_00958491.1| ATPase, AAA family protein [Roseovarius nubinhibens ISM] gi|83837657|gb|EAP76953.1| ATPase, AAA family protein [Roseovarius nubinhibens ISM] Length = 437 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 14/138 (10%) Query: 21 LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 L+RP++L E GQ + + L V +E +L ++ GPPG+GKTT+A+++A E Sbjct: 25 LMRPQSLGEVIGQEQVLGPEAPLGVMLENG-----SLGSLILWGPPGVGKTTIARLLAAE 79 Query: 78 LGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 80 TDLHFVQISAIFTGVPELRKVFEEARMRHGNGRGTLLFVDEIHRFNKAQQDGFLPHMEDG 139 Query: 133 QLDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 140 TI-LLVGATTENPSFELN 156 >gi|49475767|ref|YP_033808.1| recombination factor protein RarA [Bartonella henselae str. Houston-1] gi|49238574|emb|CAF27815.1| ATPase, aaa family [Bartonella henselae str. Houston-1] Length = 439 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L + TGQ + A ++ ++F GPPG GKTT+A+++A E Sbjct: 24 MRPHSLNDVTGQSHLVGEKGLLSRIVAA--GSIGSMIFWGPPGTGKTTVARLLALETNFA 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + +L + + + R VLF+DEIHR + ++ P MED + Sbjct: 82 FEQVSA-IFTGVAELKKIFESAQARFMSGSQTVLFVDEIHRFNRAQQDSFLPVMEDGTV- 139 Query: 136 LMVGEGPSARSVKIN 150 +++G S ++N Sbjct: 140 ILIGATTENPSFELN 154 >gi|116748300|ref|YP_844987.1| recombination factor protein RarA [Syntrophobacter fumaroxidans MPOB] gi|116697364|gb|ABK16552.1| Recombination protein MgsA [Syntrophobacter fumaroxidans MPOB] Length = 451 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 12/141 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L+EF GQ K+ ++R + GPPG GKTTLA ++A + + Sbjct: 25 MRPGSLDEFVGQDHLLGRGKILDRVIRSRR--FQSFVLWGPPGSGKTTLAAIIAAQTQTH 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 S V+A ++ +T + R LF+DEIHRL+ ++ L P +E+ L Sbjct: 83 MIHLSA-VMAGTREIREAVTEAKQVWAKQKLRTWLFMDEIHRLNKAQQDTLLPHIENGTL 141 Query: 135 DLM--VGEGPSARSVKINLSR 153 L+ E PS ++ LSR Sbjct: 142 LLLGATTENPSFEIIRPLLSR 162 >gi|120598817|ref|YP_963391.1| recombination factor protein RarA [Shewanella sp. W3-18-1] gi|120558910|gb|ABM24837.1| Recombination protein MgsA [Shewanella sp. W3-18-1] Length = 443 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 41/265 (15%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR++ E+ GQ L+ +EA +A + ++ GPPG GKTTLA+++A+ Sbjct: 19 MRPRSIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAQYS 73 Query: 79 GVNFRS----TSG--PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 + TSG + A A+ + R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISAVTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNKSQQDAFLPFIEDG 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI- 191 + + +G S +IN + + RV L+ RL+ EI + T Sbjct: 134 TV-IFIGATTENPSFEIN----NALLSRARVYLIK-----------RLSNDEIAHIVTQA 177 Query: 192 ---VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 +RG L L + + ++A G R A LL + D V+ T T E+ Sbjct: 178 LADTERGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELMSDM--VSDNDTFTLEM--- 232 Query: 249 ALLRLAIDKM-GFDQLDLRYLTMIA 272 L+++A ++ GFD+ ++ +I+ Sbjct: 233 -LVQVAGHQVAGFDKNGDQFYDLIS 256 >gi|220915883|ref|YP_002491187.1| AAA ATPase central domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953737|gb|ACL64121.1| AAA ATPase central domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 437 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 18/134 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR LE+F GQ + L+ IEA + + ++ GPPG GKTTLA++VA+ Sbjct: 21 MRPRRLEDFAGQEHVLGPGTALRRSIEA-----DQVPSLILWGPPGTGKTTLARIVAQRT 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 G +F S V+ ++ ++ R +LF+DEIHR + ++ P +ED Sbjct: 76 GADFVPFSA-VLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRFTRAQQDAFLPHVED 134 Query: 132 FQLDLM--VGEGPS 143 + L+ E PS Sbjct: 135 GTITLIGATTENPS 148 >gi|329667579|gb|AEB93527.1| hypothetical protein LJP_1205 [Lactobacillus johnsonii DPC 6026] Length = 431 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ N K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 8 MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + ++A+ G ++ + +L +DEIHRL ++ L P +E Sbjct: 66 FRKLNAATDTKKDLQIVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLE 115 >gi|316933557|ref|YP_004108539.1| AAA ATPase central domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601271|gb|ADU43806.1| AAA ATPase central domain protein [Rhodopseudomonas palustris DX-1] Length = 443 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L + GQ + R L ++F GPPG GKTT+A+++A ++ Sbjct: 30 LRPRSLADVVGQDHIVGPDGALTRMLETRT--LGSLVFWGPPGTGKTTVARLLADATELH 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + R +LF+DE+HR + ++ P MED + Sbjct: 88 FEQISA-VFSGVADLKKVFDAARARREMGTGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145 Query: 136 LMVGEGPSARSVKIN 150 +MVG S ++N Sbjct: 146 VMVGATTENPSFELN 160 >gi|42518874|ref|NP_964804.1| recombination factor protein RarA [Lactobacillus johnsonii NCC 533] gi|41583160|gb|AAS08770.1| hypothetical protein LJ_0949 [Lactobacillus johnsonii NCC 533] Length = 431 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ N K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 8 MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + ++A+ G ++ + +L +DEIHRL ++ L P +E Sbjct: 66 FRKLNAATDTKKDLQIVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLE 115 >gi|295135714|ref|YP_003586390.1| recombination factor protein RarA [Zunongwangia profunda SM-A87] gi|294983729|gb|ADF54194.1| recombination factor protein RarA [Zunongwangia profunda SM-A87] Length = 424 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+++ Q + K + ++F GPPG+GKTTLA ++A E Sbjct: 9 LRPKTLDQYLSQTHLIGEKGALRQQIKRGI--IPSMIFWGPPGVGKTTLANIIANESDRP 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VI KA L T +LFIDEIHR S ++ L A+E Sbjct: 67 FFTLSAISSGVKDVREVIEKAKRSDGLFTT--KSPILFIDEIHRFSKSQQDSLLGAVEKG 124 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 125 WVTLIGATTENPSFEVISALLSR 147 >gi|67643955|ref|ZP_00442698.1| ATPase, AAA family protein [Burkholderia mallei GB8 horse 4] gi|76809377|ref|YP_334448.1| recombination factor protein RarA [Burkholderia pseudomallei 1710b] gi|121599128|ref|YP_992137.1| recombination factor protein RarA [Burkholderia mallei SAVP1] gi|124386623|ref|YP_001028581.1| recombination factor protein RarA [Burkholderia mallei NCTC 10229] gi|126448329|ref|YP_001081520.1| recombination factor protein RarA [Burkholderia mallei NCTC 10247] gi|134280424|ref|ZP_01767135.1| ATPase, AAA family [Burkholderia pseudomallei 305] gi|166998317|ref|ZP_02264177.1| ATPase, AAA family protein [Burkholderia mallei PRL-20] gi|167816971|ref|ZP_02448651.1| recombination factor protein RarA [Burkholderia pseudomallei 91] gi|254175353|ref|ZP_04882013.1| ATPase, AAA family protein [Burkholderia mallei ATCC 10399] gi|254191852|ref|ZP_04898355.1| ATPase, AAA family [Burkholderia pseudomallei Pasteur 52237] gi|254196125|ref|ZP_04902550.1| ATPase, AAA family [Burkholderia pseudomallei S13] gi|254202387|ref|ZP_04908750.1| ATPase, AAA family protein [Burkholderia mallei FMH] gi|254207719|ref|ZP_04914069.1| ATPase, AAA family protein [Burkholderia mallei JHU] gi|254261086|ref|ZP_04952140.1| replication-associated recombination protein A [Burkholderia pseudomallei 1710a] gi|254356381|ref|ZP_04972657.1| ATPase, AAA family protein [Burkholderia mallei 2002721280] gi|76578830|gb|ABA48305.1| ATPase, AAA family protein [Burkholderia pseudomallei 1710b] gi|121227938|gb|ABM50456.1| ATPase, AAA family protein [Burkholderia mallei SAVP1] gi|124294643|gb|ABN03912.1| ATPase, AAA family [Burkholderia mallei NCTC 10229] gi|126241199|gb|ABO04292.1| ATPase, AAA family protein [Burkholderia mallei NCTC 10247] gi|134248431|gb|EBA48514.1| ATPase, AAA family [Burkholderia pseudomallei 305] gi|147746634|gb|EDK53711.1| ATPase, AAA family protein [Burkholderia mallei FMH] gi|147751613|gb|EDK58680.1| ATPase, AAA family protein [Burkholderia mallei JHU] gi|148025378|gb|EDK83532.1| ATPase, AAA family protein [Burkholderia mallei 2002721280] gi|157939523|gb|EDO95193.1| ATPase, AAA family [Burkholderia pseudomallei Pasteur 52237] gi|160696397|gb|EDP86367.1| ATPase, AAA family protein [Burkholderia mallei ATCC 10399] gi|169652869|gb|EDS85562.1| ATPase, AAA family [Burkholderia pseudomallei S13] gi|238525428|gb|EEP88856.1| ATPase, AAA family protein [Burkholderia mallei GB8 horse 4] gi|243065389|gb|EES47575.1| ATPase, AAA family protein [Burkholderia mallei PRL-20] gi|254219775|gb|EET09159.1| replication-associated recombination protein A [Burkholderia pseudomallei 1710a] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 58/326 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + +D +L+ + Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 171 Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 ++R L GLA D+A + + G R LL + + A A TI DAA Sbjct: 172 LKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 226 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 + A +TM AR F GG + ISA R + D ++ + Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273 Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332 P+ R ++ +AW+ +G+ P Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299 >gi|126454407|ref|YP_001067279.1| recombination factor protein RarA [Burkholderia pseudomallei 1106a] gi|167720767|ref|ZP_02404003.1| recombination factor protein RarA [Burkholderia pseudomallei DM98] gi|167739751|ref|ZP_02412525.1| recombination factor protein RarA [Burkholderia pseudomallei 14] gi|167825381|ref|ZP_02456852.1| recombination factor protein RarA [Burkholderia pseudomallei 9] gi|167851463|ref|ZP_02476971.1| recombination factor protein RarA [Burkholderia pseudomallei B7210] gi|167895448|ref|ZP_02482850.1| recombination factor protein RarA [Burkholderia pseudomallei 7894] gi|167903834|ref|ZP_02491039.1| recombination factor protein RarA [Burkholderia pseudomallei NCTC 13177] gi|167912100|ref|ZP_02499191.1| recombination factor protein RarA [Burkholderia pseudomallei 112] gi|167920074|ref|ZP_02507165.1| recombination factor protein RarA [Burkholderia pseudomallei BCC215] gi|217421197|ref|ZP_03452702.1| ATPase, AAA family [Burkholderia pseudomallei 576] gi|237813404|ref|YP_002897855.1| recombination factor protein RarA [Burkholderia pseudomallei MSHR346] gi|242315892|ref|ZP_04814908.1| replication-associated recombination protein A [Burkholderia pseudomallei 1106b] gi|126228049|gb|ABN91589.1| ATPase, AAA family [Burkholderia pseudomallei 1106a] gi|217396609|gb|EEC36626.1| ATPase, AAA family [Burkholderia pseudomallei 576] gi|237506600|gb|ACQ98918.1| recombination factor protein RarA [Burkholderia pseudomallei MSHR346] gi|242139131|gb|EES25533.1| replication-associated recombination protein A [Burkholderia pseudomallei 1106b] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 58/326 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + +D +L+ + Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 171 Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 ++R L GLA D+A + + G R LL + + A A TI DAA Sbjct: 172 LKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 226 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 + A +TM AR F GG + ISA R + D ++ + Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273 Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332 P+ R ++ +AW+ +G+ P Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299 >gi|300921074|ref|ZP_07137458.1| replication-associated recombination protein A [Escherichia coli MS 115-1] gi|300411925|gb|EFJ95235.1| replication-associated recombination protein A [Escherichia coli MS 115-1] Length = 428 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 1 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 56 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 116 ITFIGATTENPS 127 >gi|258653471|ref|YP_003202627.1| ATPase AAA central domain-containing protein [Nakamurella multipartita DSM 44233] gi|258556696|gb|ACV79638.1| AAA ATPase central domain protein [Nakamurella multipartita DSM 44233] Length = 494 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 69/144 (47%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + + L+ ++ A +L GPPG GKTTLA +VA Sbjct: 47 MRPRTLDEVVGQQHLLGPGAPLRRLVQGG-----APSSMLLYGPPGTGKTTLATLVAGST 101 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 G F S V A ++ A++ R VLFIDE+HR S ++ L A+ED Sbjct: 102 GRFFAQLSA-VSAGVKEVRAVIAEATTRLRRTGEQTVLFIDEVHRFSRTQQDSLLGAVED 160 Query: 132 FQLDLMVG--EGPSARSVKINLSR 153 + L+ E P V LSR Sbjct: 161 RTIVLVAATTENPFFSVVSPLLSR 184 >gi|229105033|ref|ZP_04235687.1| hypothetical protein bcere0019_41690 [Bacillus cereus Rock3-28] gi|228678410|gb|EEL32633.1| hypothetical protein bcere0019_41690 [Bacillus cereus Rock3-28] Length = 428 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 86/330 (26%), Positives = 130/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VTDEA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|86157157|ref|YP_463942.1| recombination factor protein RarA [Anaeromyxobacter dehalogenans 2CP-C] gi|85773668|gb|ABC80505.1| Recombination protein MgsA [Anaeromyxobacter dehalogenans 2CP-C] Length = 437 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR LE+F GQ + L+ IEA + + ++ GPPG GKTTLA++VA+ Sbjct: 21 MRPRRLEDFAGQEHVLGPGTALRRSIEA-----DQVPSLILWGPPGTGKTTLARIVAQRT 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 G +F S V+ ++ ++ R +LF+DEIHR + ++ P +ED Sbjct: 76 GADFVPFSA-VLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRFTRAQQDAFLPHVED 134 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS LSR Sbjct: 135 GTITLIGATTENPSFEVNAALLSR 158 >gi|89895174|ref|YP_518661.1| recombination factor protein RarA [Desulfitobacterium hafniense Y51] gi|89334622|dbj|BAE84217.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 440 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+++ GQ E K+ A +A + + ++ GPPG GKT+LAQV+A Sbjct: 23 MRPRTLDDYIGQSEIIGKGKLLRRAIEA--DRVTSLILYGPPGTGKTSLAQVIANTTSSG 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + V A ++ ++ + + ++F DE+HR + ++ L PA+E+ + Sbjct: 81 FVRINA-VAAGVKEIREIIQTATEQLHLYGKKTLVFCDEVHRFNKGQQDALLPAVENGTI 139 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 + E P LSR TL Sbjct: 140 TFIGATTENPFFELNSALLSRSTLF 164 >gi|254181008|ref|ZP_04887606.1| ATPase, AAA family [Burkholderia pseudomallei 1655] gi|184211547|gb|EDU08590.1| ATPase, AAA family [Burkholderia pseudomallei 1655] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 58/326 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + +D +L+ + Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 171 Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 ++R L GLA D+A + + G R LL + + A A TI DAA Sbjct: 172 LKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 226 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 + A +TM AR F GG + ISA R + D ++ + Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273 Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332 P+ R ++ +AW+ +G+ P Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299 >gi|296103102|ref|YP_003613248.1| recombination factor protein RarA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057561|gb|ADF62299.1| recombination factor protein RarA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDR 173 + +G S ++N LSR + L + TT +LT + D+ Sbjct: 135 I-FFIGATTENPSFELNSALLSRARVYLLKSLTTEDIENVLTQAMDDK 181 >gi|253574915|ref|ZP_04852255.1| AAA ATPase central domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845961|gb|EES73969.1| AAA ATPase central domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 452 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L+E+ GQ K+ A +A + + +L GPPG GKTTLA +++ Sbjct: 36 MRPTSLDEYIGQEHIVGPGKLLRRAIEA--DQVSSILLYGPPGCGKTTLAHIISHHTKAE 93 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F + V A D+ ++ ++ + +LF+DE+HR + ++ L PA+E Sbjct: 94 FVRLNA-VDASVKDVREVIEKAQNDKAFYGTKTILFLDEVHRFNSSRQDALLPAVE 148 >gi|320180609|gb|EFW55538.1| recombination factor protein RarA [Shigella boydii ATCC 9905] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|315619204|gb|EFU99783.1| ATPase family associated with various cellular activities (AAA) family protein [Escherichia coli 3431] Length = 428 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 1 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 56 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 116 ITFIGATTENPS 127 >gi|320175333|gb|EFW50439.1| recombination factor protein RarA [Shigella dysenteriae CDC 74-1112] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|237730857|ref|ZP_04561338.1| recombination factor protein RarA [Citrobacter sp. 30_2] gi|226906396|gb|EEH92314.1| recombination factor protein RarA [Citrobacter sp. 30_2] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|209520410|ref|ZP_03269172.1| AAA ATPase central domain protein [Burkholderia sp. H160] gi|209499147|gb|EDZ99240.1| AAA ATPase central domain protein [Burkholderia sp. H160] Length = 437 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 125/290 (43%), Gaps = 46/290 (15%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR ++E GQ L+V E+ KA + ++ GPPG+GKTTLA+++A Sbjct: 15 LRPRNIDEVIGQTHLLGPNKPLRVAFESGKAHS-----MILWGPPGVGKTTLARLMADAF 69 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S + I +A + A + + ++F+DE+HR + ++ P +E Sbjct: 70 HAEFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 128 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L + VG S ++N + L R + + + + E + + + Sbjct: 129 LFVFVGATTENPSFEVN-----------------SALLSRAAVYVLKSLTDDEQRELLER 171 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 +L GL TDEA + + G R +LL + A A A+ T EI D LL Sbjct: 172 AQEELGGLTFTDEARAALIGSADGDGR---KLLNNLEIVARAA-ARQTTTEI-DGTLLGS 226 Query: 254 AI-------DKMG---FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293 A+ DK G +DQ+ + ++ N G + G ++PR Sbjct: 227 ALAENLRRFDKGGDAFYDQISALHKSVRGSNPDGALYWFCRMLDGGADPR 276 >gi|90424905|ref|YP_533275.1| recombination factor protein RarA [Rhodopseudomonas palustris BisB18] gi|90106919|gb|ABD88956.1| Recombination protein MgsA [Rhodopseudomonas palustris BisB18] Length = 442 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR LE+ GQ + R L ++F GPPG GKTT+A+++A ++ Sbjct: 30 LRPRALEDVVGQDHILGPDGALTRMLETRT--LGSLVFWGPPGTGKTTVARLLADTTELH 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + R +LF+DE+HR + ++ P MED + Sbjct: 88 FEQISA-VFSGVADLKKVFDAARARRQTGRGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 146 VLVGATTENPSFELN 160 >gi|293433189|ref|ZP_06661617.1| replication-associated recombination protein A [Escherichia coli B088] gi|291324008|gb|EFE63430.1| replication-associated recombination protein A [Escherichia coli B088] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|188495408|ref|ZP_03002678.1| ATPase, AAA family [Escherichia coli 53638] gi|188490607|gb|EDU65710.1| ATPase, AAA family [Escherichia coli 53638] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|300926530|ref|ZP_07142319.1| replication-associated recombination protein A [Escherichia coli MS 182-1] gi|301325785|ref|ZP_07219233.1| replication-associated recombination protein A [Escherichia coli MS 78-1] gi|300417447|gb|EFK00758.1| replication-associated recombination protein A [Escherichia coli MS 182-1] gi|300847428|gb|EFK75188.1| replication-associated recombination protein A [Escherichia coli MS 78-1] gi|323175486|gb|EFZ61081.1| magnesium chelatase, subunit ChlI family protein [Escherichia coli 1180] Length = 428 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 1 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 56 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 116 ITFIGATTENPS 127 >gi|157146420|ref|YP_001453739.1| recombination factor protein RarA [Citrobacter koseri ATCC BAA-895] gi|157083625|gb|ABV13303.1| hypothetical protein CKO_02179 [Citrobacter koseri ATCC BAA-895] Length = 428 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 1 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 56 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 116 ITFIGATTENPS 127 >gi|300823631|ref|ZP_07103758.1| replication-associated recombination protein A [Escherichia coli MS 119-7] gi|300896501|ref|ZP_07115025.1| replication-associated recombination protein A [Escherichia coli MS 198-1] gi|300902951|ref|ZP_07120895.1| replication-associated recombination protein A [Escherichia coli MS 84-1] gi|300929585|ref|ZP_07145048.1| replication-associated recombination protein A [Escherichia coli MS 187-1] gi|300949748|ref|ZP_07163725.1| replication-associated recombination protein A [Escherichia coli MS 116-1] gi|300954715|ref|ZP_07167150.1| replication-associated recombination protein A [Escherichia coli MS 175-1] gi|300978544|ref|ZP_07174297.1| replication-associated recombination protein A [Escherichia coli MS 45-1] gi|300983197|ref|ZP_07176476.1| replication-associated recombination protein A [Escherichia coli MS 200-1] gi|301047850|ref|ZP_07194900.1| replication-associated recombination protein A [Escherichia coli MS 185-1] gi|301302501|ref|ZP_07208632.1| replication-associated recombination protein A [Escherichia coli MS 124-1] gi|301646337|ref|ZP_07246225.1| replication-associated recombination protein A [Escherichia coli MS 146-1] gi|300300278|gb|EFJ56663.1| replication-associated recombination protein A [Escherichia coli MS 185-1] gi|300306961|gb|EFJ61481.1| replication-associated recombination protein A [Escherichia coli MS 200-1] gi|300318326|gb|EFJ68110.1| replication-associated recombination protein A [Escherichia coli MS 175-1] gi|300359650|gb|EFJ75520.1| replication-associated recombination protein A [Escherichia coli MS 198-1] gi|300405012|gb|EFJ88550.1| replication-associated recombination protein A [Escherichia coli MS 84-1] gi|300409623|gb|EFJ93161.1| replication-associated recombination protein A [Escherichia coli MS 45-1] gi|300450862|gb|EFK14482.1| replication-associated recombination protein A [Escherichia coli MS 116-1] gi|300462473|gb|EFK25966.1| replication-associated recombination protein A [Escherichia coli MS 187-1] gi|300523831|gb|EFK44900.1| replication-associated recombination protein A [Escherichia coli MS 119-7] gi|300842340|gb|EFK70100.1| replication-associated recombination protein A [Escherichia coli MS 124-1] gi|301075440|gb|EFK90246.1| replication-associated recombination protein A [Escherichia coli MS 146-1] gi|315257932|gb|EFU37900.1| replication-associated recombination protein A [Escherichia coli MS 85-1] gi|315291251|gb|EFU50611.1| replication-associated recombination protein A [Escherichia coli MS 153-1] gi|315296140|gb|EFU55449.1| replication-associated recombination protein A [Escherichia coli MS 16-3] gi|323190714|gb|EFZ75983.1| ATPase family associated with various cellular activities family protein [Escherichia coli RN587/1] gi|324009813|gb|EGB79032.1| replication-associated recombination protein A [Escherichia coli MS 57-2] gi|324012982|gb|EGB82201.1| replication-associated recombination protein A [Escherichia coli MS 60-1] gi|324019017|gb|EGB88236.1| replication-associated recombination protein A [Escherichia coli MS 117-3] Length = 428 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 1 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 56 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 116 ITFIGATTENPS 127 >gi|82543378|ref|YP_407325.1| recombination factor protein RarA [Shigella boydii Sb227] gi|81244789|gb|ABB65497.1| putative polynucleotide enzyme [Shigella boydii Sb227] gi|320183169|gb|EFW58027.1| recombination factor protein RarA [Shigella flexneri CDC 796-83] gi|332097125|gb|EGJ02108.1| ATPase family associated with various cellular activities family protein [Shigella boydii 3594-74] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|14714682|gb|AAH10482.1| Werner helicase interacting protein 1 [Mus musculus] Length = 660 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +EA + + ++ GPPG GKTTLA ++A Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 280 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 339 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 340 VECGTITLIGATTENPSFQVNAALLSRCRVI 370 >gi|219669601|ref|YP_002460036.1| recombination factor protein RarA [Desulfitobacterium hafniense DCB-2] gi|219539861|gb|ACL21600.1| AAA ATPase central domain protein [Desulfitobacterium hafniense DCB-2] Length = 437 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+++ GQ E K+ A +A + + ++ GPPG GKT+LAQV+A Sbjct: 20 MRPRTLDDYIGQSEIIGKGKLLRRAIEA--DRVTSLILYGPPGTGKTSLAQVIANTTSSG 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + V A ++ ++ + + ++F DE+HR + ++ L PA+E+ + Sbjct: 78 FVRINA-VAAGVKEIREIIQTATEQLHLYGKKTLVFCDEVHRFNKGQQDALLPAVENGTI 136 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 + E P LSR TL Sbjct: 137 TFIGATTENPFFELNSALLSRSTLF 161 >gi|323185143|gb|EFZ70508.1| ATPase family associated with various cellular activities family protein [Escherichia coli 1357] Length = 428 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 1 MRPENLAQYIGQQHLLAAGKPLPHAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 56 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 116 ITFIGATTENPS 127 >gi|310643530|ref|YP_003948288.1| aaa atpase central domain-containing protein [Paenibacillus polymyxa SC2] gi|309248480|gb|ADO58047.1| AAA ATPase central domain-containing protein [Paenibacillus polymyxa SC2] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L+E+ GQ K+ A +A + + +L GPPG GKTTLA ++++ + Sbjct: 21 LRPTSLDEYIGQEHVVGPGKLLRRAIEA--DQVSSILLYGPPGCGKTTLAHIISQHTQGD 78 Query: 82 FRSTSGPVIAKAGDLAALL----TNLE---DRDVLFIDEIHRLSIIVEEILYPAME 130 F + V A D+ ++ TN + +LF+DE+HR + ++ L PA+E Sbjct: 79 FVRLNA-VEASVKDVREVIDRAQTNKSMYGKKTILFLDEVHRFNSSRQDALLPAVE 133 >gi|300817006|ref|ZP_07097225.1| replication-associated recombination protein A [Escherichia coli MS 107-1] gi|301022877|ref|ZP_07186710.1| replication-associated recombination protein A [Escherichia coli MS 69-1] gi|309795299|ref|ZP_07689717.1| replication-associated recombination protein A [Escherichia coli MS 145-7] gi|300397339|gb|EFJ80877.1| replication-associated recombination protein A [Escherichia coli MS 69-1] gi|300530358|gb|EFK51420.1| replication-associated recombination protein A [Escherichia coli MS 107-1] gi|308120949|gb|EFO58211.1| replication-associated recombination protein A [Escherichia coli MS 145-7] gi|332091064|gb|EGI96154.1| ATPase family associated with various cellular activities family protein [Shigella dysenteriae 155-74] Length = 428 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 1 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 56 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 116 ITFIGATTENPS 127 >gi|312114760|ref|YP_004012356.1| ATPase AAA [Rhodomicrobium vannielii ATCC 17100] gi|311219889|gb|ADP71257.1| AAA ATPase central domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 455 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L + GQ A EA ++F GPPG GKTT+A+++A+ G + Sbjct: 37 LRPASLGDVIGQEHLLGEGGPLRRIADG--EAPRSMIFWGPPGTGKTTVARLMAKGAGAH 94 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + +DR +LF+DEIHR + ++ P +ED + Sbjct: 95 FEQISA-IFSGVADLRKVFDAAKDRQRFGQGTILFVDEIHRFNRSQQDSFLPFVEDGTI- 152 Query: 136 LMVGEGPSARSVKIN 150 +++G S ++N Sbjct: 153 ILIGATTENPSFELN 167 >gi|255534679|ref|YP_003095050.1| ATPase, AAA family [Flavobacteriaceae bacterium 3519-10] gi|255340875|gb|ACU06988.1| ATPase, AAA family [Flavobacteriaceae bacterium 3519-10] Length = 442 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 12/141 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL+E GQ E + K + + L+ ++F GPPG GKTT+A++++ + G Sbjct: 28 MRPKTLDEVRGQ-EHLTGEKGTVRKM-LENDTLNSLIFWGPPGTGKTTIAEIISEQSGRK 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V + D+ ++ + ++ +LFIDEIHR + ++ L A+E + Sbjct: 86 FFKLSA-VSSGVKDVREVIEEAKKQNLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWI 144 Query: 135 DLM--VGEGPSARSVKINLSR 153 L+ E PS V LSR Sbjct: 145 VLIGATTENPSFEVVSALLSR 165 >gi|197121182|ref|YP_002133133.1| recombination factor protein RarA [Anaeromyxobacter sp. K] gi|196171031|gb|ACG72004.1| AAA ATPase central domain protein [Anaeromyxobacter sp. K] Length = 437 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 18/134 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR LE+F GQ + L+ IEA + + ++ GPPG GKTTLA++VA+ Sbjct: 21 MRPRRLEDFAGQEHVLGPGTALRRSIEA-----DQVPSLILWGPPGTGKTTLARIVAQRT 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 G +F S V+ ++ ++ R +LF+DEIHR + ++ P +ED Sbjct: 76 GADFVPFSA-VLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRFTRAQQDAFLPHVED 134 Query: 132 FQLDLM--VGEGPS 143 + L+ E PS Sbjct: 135 GTITLIGATTENPS 148 >gi|47086195|ref|NP_998085.1| ATPase WRNIP1 [Danio rerio] gi|45709587|gb|AAH67729.1| Zgc:85976 [Danio rerio] Length = 546 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 14/149 (9%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA---RE 77 LLRP TLEE+ GQ + + K+ + + ++ GPPG GKTTLA ++A ++ Sbjct: 120 LLRPSTLEEYFGQNKLIGEQTLLRSLLKS--QEIPSLILWGPPGCGKTTLAHIIASSIKQ 177 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 G T A D+ ++ ++ + VLFIDEIHR + ++ P +E Sbjct: 178 KGTGRFVTLSATSASVSDVREVIKQAQNELRLCKRKTVLFIDEIHRFNKSQQDTFLPHVE 237 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157 + L+ E PS + LSR ++ Sbjct: 238 CGTITLIGATTENPSFQVNSALLSRCRVL 266 >gi|53720212|ref|YP_109198.1| recombination factor protein RarA [Burkholderia pseudomallei K96243] gi|53725979|ref|YP_103691.1| recombination factor protein RarA [Burkholderia mallei ATCC 23344] gi|52210626|emb|CAH36610.1| putative ATPase protein [Burkholderia pseudomallei K96243] gi|52429402|gb|AAU49995.1| ATPase, AAA family protein [Burkholderia mallei ATCC 23344] Length = 455 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 58/326 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 36 LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 90 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + D +LF+DEIHR + ++ L P +E Sbjct: 91 DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 149 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + +D +L+ + Sbjct: 150 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 190 Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 ++R L GLA D+A + + G R LL + + A A TI DAA Sbjct: 191 LKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 245 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 + A +TM AR F GG + ISA R + D ++ + Sbjct: 246 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 292 Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332 P+ R ++ +AW+ +G+ P Sbjct: 293 DGGADPKYLARRVVRMAWEDIGLADP 318 >gi|187733902|ref|YP_001880910.1| recombination factor protein RarA [Shigella boydii CDC 3083-94] gi|187430894|gb|ACD10168.1| putative DNA recombination-associated ATPase RarA [Shigella boydii CDC 3083-94] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|322616394|gb|EFY13303.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619644|gb|EFY16519.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622660|gb|EFY19505.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628573|gb|EFY25360.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634946|gb|EFY31675.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637036|gb|EFY33739.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641603|gb|EFY38240.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644442|gb|EFY40982.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649588|gb|EFY46019.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654110|gb|EFY50433.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659225|gb|EFY55474.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663499|gb|EFY59701.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670235|gb|EFY66375.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671471|gb|EFY67593.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676827|gb|EFY72894.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682752|gb|EFY78771.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686431|gb|EFY82413.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323191717|gb|EFZ76971.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199758|gb|EFZ84847.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202197|gb|EFZ87251.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209022|gb|EFZ93959.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210414|gb|EFZ95303.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323222450|gb|EGA06824.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226865|gb|EGA11048.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229819|gb|EGA13942.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233044|gb|EGA17140.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240779|gb|EGA24821.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243096|gb|EGA27116.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247418|gb|EGA31374.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250912|gb|EGA34789.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256445|gb|EGA40179.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263111|gb|EGA46653.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267977|gb|EGA51456.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270717|gb|EGA54157.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|308070341|ref|YP_003871946.1| hypothetical protein PPE_03591 [Paenibacillus polymyxa E681] gi|305859620|gb|ADM71408.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L+E+ GQ K+ A +A + + +L GPPG GKTTLA ++++ + Sbjct: 21 LRPTSLDEYIGQEHVVGPGKLLRRAIEA--DQVSSILLYGPPGCGKTTLAHIISQHTQGD 78 Query: 82 FRSTSGPVIAKAGDLAALL----TNLE---DRDVLFIDEIHRLSIIVEEILYPAME 130 F + V A D+ ++ TN + +LF+DE+HR + ++ L PA+E Sbjct: 79 FVRLNA-VEASVKDVREVIDRAQTNKSMYGKKTILFLDEVHRFNSSRQDALLPAVE 133 >gi|254470398|ref|ZP_05083802.1| ATPase, AAA family protein [Pseudovibrio sp. JE062] gi|211960709|gb|EEA95905.1| ATPase, AAA family protein [Pseudovibrio sp. JE062] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR LE+ GQ + + R+ +L ++F GPPG GKTT+A+++A + Sbjct: 22 MRPRVLEDVVGQGHLLGEDGIL--SRMLRSGSLGSLIFWGPPGTGKTTVARLLADATDLE 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDV------LFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R + LF+DEIHR + + P MED + Sbjct: 80 FEQISA-IFSGVADLKKCFERAKGRRISSKRTLLFVDEIHRFNRAQLDSFLPVMEDGTIT 138 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 139 LVGATTENPS 148 >gi|296126532|ref|YP_003633784.1| ATPase AAA [Brachyspira murdochii DSM 12563] gi|296018348|gb|ADG71585.1| AAA ATPase central domain protein [Brachyspira murdochii DSM 12563] Length = 435 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 117/273 (42%), Gaps = 55/273 (20%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP ++EE GQ L+ I+ K + ++F GPPG+GK+T+A ++A++ Sbjct: 22 MRPLSIEEVFGQKHILGKDKTLRKMIDNDK-----ITSMVFFGPPGVGKSTVASIIAKKT 76 Query: 79 GVNFRSTSGPVIAKAGDLAALL----TNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDF 132 + + V++ ++ + NLE+R +LFIDEIHR + ++ L PA+E+ Sbjct: 77 KSEYIKLNA-VLSNVSEIREAIKKAEKNLENRKKTILFIDEIHRFNKSQQDALLPAVENG 135 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIED--- 187 + LI +TT+ L N L R + F ++D Sbjct: 136 SV--------------------ILIGSTTQNPYFYLNNALLSRIML---FEFRNLDDNDI 172 Query: 188 ----LKTIV-QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--- 239 LK I +RG +AV D A I S G R A L ++ K Sbjct: 173 REALLKAITDKRGLGEDDVAVEDGAVSLIVRYSHGDVRKAFTYLEASYLATQIDETKEKL 232 Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272 TIT EI + + M FD+ D Y T+ A Sbjct: 233 TITEEIVKDVTSKQS---MTFDE-DEHYNTISA 261 >gi|126434949|ref|YP_001070640.1| recombination factor protein RarA [Mycobacterium sp. JLS] gi|126234749|gb|ABN98149.1| Recombination protein MgsA [Mycobacterium sp. JLS] Length = 445 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 19/144 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ ++ S L+ +E + A + V+ GPPG GKTTLA +++ Sbjct: 29 MRPASLDEVVGQQHLLKPNSPLRRLVEGSGAAS-----VILYGPPGTGKTTLASLISHAT 83 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A ++ A++ + VLFIDE+HR S ++ L A+E+ Sbjct: 84 GRRFEALSA-LSAGVKEVRAVIETARQGILRGQQTVLFIDEVHRFSKTQQDALLAAVEN- 141 Query: 133 QLDLMVG---EGPSARSVKINLSR 153 ++ L+V E PS V LSR Sbjct: 142 RIVLLVAATTENPSFSVVAPLLSR 165 >gi|325915378|ref|ZP_08177695.1| Recombination protein MgsA [Xanthomonas vesicatoria ATCC 35937] gi|325538425|gb|EGD10104.1| Recombination protein MgsA [Xanthomonas vesicatoria ATCC 35937] Length = 457 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 29 MRPRTLDEMVGQKRLLTPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F++ S V++ D+ +L R VLF+DE+HR + ++ P +E Sbjct: 84 DAEFKAISA-VLSGLPDVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQQDAFLPHIERG 142 Query: 133 QLDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 143 TI-LFVGATTENPSFELN 159 >gi|323967139|gb|EGB62563.1| ATPase [Escherichia coli M863] gi|327253680|gb|EGE65309.1| ATPase family associated with various cellular activities family protein [Escherichia coli STEC_7v] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|16759833|ref|NP_455450.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764323|ref|NP_459938.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142394|ref|NP_805736.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413986|ref|YP_151061.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161614808|ref|YP_001588773.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994703|ref|ZP_02575794.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230855|ref|ZP_02655913.1| putative DNA recombination-associated ATPase RarA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168240812|ref|ZP_02665744.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263552|ref|ZP_02685525.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466546|ref|ZP_02700408.1| putative DNA recombination-associated ATPase RarA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822938|ref|ZP_02834938.1| putative DNA recombination-associated ATPase RarA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446297|ref|YP_002040161.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447715|ref|YP_002044955.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471144|ref|ZP_03077128.1| putative DNA recombination-associated ATPase RarA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197263317|ref|ZP_03163391.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362909|ref|YP_002142546.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200391027|ref|ZP_03217638.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213428592|ref|ZP_03361342.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213851471|ref|ZP_03381369.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238913263|ref|ZP_04657100.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289830103|ref|ZP_06547534.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25329900|pir||AH0611 conserevd hypothetical protein STY0960 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419474|gb|AAL19897.1| putative polynucleotide enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502126|emb|CAD05362.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138024|gb|AAO69585.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128243|gb|AAV77749.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161364172|gb|ABX67940.1| hypothetical protein SPAB_02560 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404960|gb|ACF65182.1| putative DNA recombination-associated ATPase RarA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406019|gb|ACF66238.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457508|gb|EDX46347.1| putative DNA recombination-associated ATPase RarA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195630930|gb|EDX49516.1| putative DNA recombination-associated ATPase RarA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094386|emb|CAR59901.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197241572|gb|EDY24192.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199603472|gb|EDZ02018.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205327462|gb|EDZ14226.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334719|gb|EDZ21483.1| putative DNA recombination-associated ATPase RarA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339853|gb|EDZ26617.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340727|gb|EDZ27491.1| putative DNA recombination-associated ATPase RarA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347729|gb|EDZ34360.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261246179|emb|CBG23983.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992695|gb|ACY87580.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157506|emb|CBW16996.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911950|dbj|BAJ35924.1| recombination protein RarA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085199|emb|CBY94985.1| ATPase WRNIP1 Werner helicase-interacting protein 1 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223286|gb|EFX48355.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129228|gb|ADX16658.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987854|gb|AEF06837.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|193064678|ref|ZP_03045757.1| putative DNA recombination-associated ATPase RarA [Escherichia coli E22] gi|194428364|ref|ZP_03060905.1| putative DNA recombination-associated ATPase RarA [Escherichia coli B171] gi|218553478|ref|YP_002386391.1| recombination factor protein RarA [Escherichia coli IAI1] gi|260843142|ref|YP_003220920.1| recombination protein [Escherichia coli O103:H2 str. 12009] gi|192927735|gb|EDV82350.1| putative DNA recombination-associated ATPase RarA [Escherichia coli E22] gi|194413579|gb|EDX29860.1| putative DNA recombination-associated ATPase RarA [Escherichia coli B171] gi|218360246|emb|CAQ97796.1| recombination protein [Escherichia coli IAI1] gi|257758289|dbj|BAI29786.1| recombination protein [Escherichia coli O103:H2 str. 12009] gi|323159517|gb|EFZ45497.1| ATPase family associated with various cellular activities family protein [Escherichia coli E128010] gi|323947319|gb|EGB43327.1| ATPase [Escherichia coli H120] gi|324116105|gb|EGC10029.1| ATPase [Escherichia coli E1167] gi|332088848|gb|EGI93960.1| ATPase family associated with various cellular activities family protein [Shigella boydii 5216-82] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|167383505|ref|XP_001736558.1| replication factor C small subunit [Entamoeba dispar SAW760] gi|165900974|gb|EDR27174.1| replication factor C small subunit, putative [Entamoeba dispar SAW760] Length = 610 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 26/243 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ LEE GQ + + F + + + + GPPG GKTT+A ++ F Sbjct: 50 RPKNLEEIIGQEDVLAIGTPF--NTMIKNDKIQSTILYGPPGCGKTTIAGIIKNNSKSTF 107 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S S +K D +L + + R +LF+DEIH L+ + ++ PA+E + + Sbjct: 108 VSMSA-ATSKKEDFKKVLNDAKHRKRLGMNTILFLDEIHSLNRLQQDTFLPAIESGTI-I 165 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLT-NPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 ++G S ++N A +R L+T L D + I L+ + Sbjct: 166 LIGATTENPSFELNN------ALMSRCQLVTLKKLTDENVVKI---------LRKAIDEE 210 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 + + + +E IA S G R A L +V + + K + EI + + + + Sbjct: 211 YYYSKIDIDNEGLHFIAAISDGDARNALNTLEKVFVHYNLMNEKVLKNEINEKGGIDIEV 270 Query: 256 DKM 258 ++ Sbjct: 271 KEL 273 >gi|161503912|ref|YP_001571024.1| recombination factor protein RarA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865259|gb|ABX21882.1| hypothetical protein SARI_02002 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 428 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 1 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 56 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 116 ITFIGATTENPS 127 >gi|37589162|gb|AAH58744.1| Wrnip1 protein [Mus musculus] Length = 526 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +EA + + ++ GPPG GKTTLA ++A Sbjct: 92 MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 146 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 147 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 205 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 206 VECGTITLIGATTENPSFQVNAALLSRCRVI 236 >gi|62179486|ref|YP_215903.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|198244942|ref|YP_002214886.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205352170|ref|YP_002225971.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856354|ref|YP_002243005.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224582772|ref|YP_002636570.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62127119|gb|AAX64822.1| paral putative polynucleotide enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|197939458|gb|ACH76791.1| putative DNA recombination-associated ATPase RarA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205271951|emb|CAR36795.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708157|emb|CAR32450.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467299|gb|ACN45129.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713955|gb|EFZ05526.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326622639|gb|EGE28984.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627214|gb|EGE33557.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|323691840|ref|ZP_08106096.1| AAA ATPase central domain-containing protein [Clostridium symbiosum WAL-14673] gi|323504122|gb|EGB19928.1| AAA ATPase central domain-containing protein [Clostridium symbiosum WAL-14673] Length = 444 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 11/156 (7%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MMD+ L N S +RP TL+ F GQ KV + + + ++F Sbjct: 1 MMDQLSLFD-NRETTSPLASRIRPDTLDGFVGQKHLIGEGKVLRNLIEK--DQVTSMIFW 57 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114 GPPG+GKTTLA+++A + +F S V + ++ ++ E R +LF+DEI Sbjct: 58 GPPGVGKTTLARIIAGKTRSSFIDFSA-VTSGIKEIKTVMEQAEKNRSMGIRTILFVDEI 116 Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 HR + ++ P +E + +++G S +IN Sbjct: 117 HRFNKAQQDAFLPYVEKGSI-ILIGATTENPSFEIN 151 >gi|228923151|ref|ZP_04086442.1| hypothetical protein bthur0011_41310 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836530|gb|EEM81880.1| hypothetical protein bthur0011_41310 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 476 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 88/350 (25%), Positives = 138/350 (39%), Gaps = 65/350 (18%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++R+ +L V + +RP ++E GQ K+ +A ++ G Sbjct: 37 IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119 PPG GKT++A +A G FR + V D+ ++ + VL +DE+HRL Sbjct: 95 PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178 ++ L P +E L TLI ATT +NP I Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188 Query: 179 RLNFYEI----ED-----LKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLL 226 R +E+ ED LK ++ K G + VTD+A A S G R A L Sbjct: 189 RCQIFELHALTEDDILIGLKRALEDKEKGLGEYAVTVTDDALHHFANASGGDMRSAYNAL 248 Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282 + F A IT EIA+ L + + DK G D+ L+ ++ G V Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306 Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 A+ L +I+ G +Q GR L+ +A++ +G+ P Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340 >gi|208779605|ref|ZP_03246950.1| ATPase, AAA family protein [Francisella novicida FTG] gi|208744566|gb|EDZ90865.1| ATPase, AAA family protein [Francisella novicida FTG] Length = 412 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++++E GQ S + + + + ++ G PG+GKT+LA+++A + Sbjct: 10 IRPQSIDEIVGQEHLLSQHGILTKILAG--DGICSLVLCGKPGVGKTSLARIIASSKKLE 67 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137 F S V + D+ L+T+ + D VLF+DEIHR + ++IL P +E ++ L+ Sbjct: 68 FFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDILLPYIESGKIILIGA 126 Query: 138 VGEGPS--------ARSVKINLSRFTLIA 158 E P+ +R + L R +L+A Sbjct: 127 TTENPTYYLNDALVSRLFILRLKRLSLVA 155 >gi|108799292|ref|YP_639489.1| recombination factor protein RarA [Mycobacterium sp. MCS] gi|119868408|ref|YP_938360.1| recombination factor protein RarA [Mycobacterium sp. KMS] gi|108769711|gb|ABG08433.1| Recombination protein MgsA [Mycobacterium sp. MCS] gi|119694497|gb|ABL91570.1| Recombination protein MgsA [Mycobacterium sp. KMS] Length = 445 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 19/144 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ ++ S L+ +E + A + V+ GPPG GKTTLA +++ Sbjct: 29 MRPASLDEVVGQQHLLKPNSPLRRLVEGSGAAS-----VILYGPPGTGKTTLASLISHAT 83 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A ++ A++ + VLFIDE+HR S ++ L A+E+ Sbjct: 84 GRRFEALSA-LSAGVKEVRAVIETARQGILRGQQTVLFIDEVHRFSKTQQDALLAAVEN- 141 Query: 133 QLDLMVG---EGPSARSVKINLSR 153 ++ L+V E PS V LSR Sbjct: 142 RIVLLVAATTENPSFSVVAPLLSR 165 >gi|254540120|ref|NP_084491.3| ATPase WRNIP1 [Mus musculus] gi|73622086|sp|Q91XU0|WRIP1_MOUSE RecName: Full=ATPase WRNIP1; AltName: Full=Werner helicase-interacting protein 1 gi|26334781|dbj|BAC31091.1| unnamed protein product [Mus musculus] gi|56206896|emb|CAI25647.1| Werner helicase interacting protein 1 [Mus musculus] gi|74195651|dbj|BAE39633.1| unnamed protein product [Mus musculus] gi|74215304|dbj|BAE41868.1| unnamed protein product [Mus musculus] gi|74221135|dbj|BAE42069.1| unnamed protein product [Mus musculus] gi|148700413|gb|EDL32360.1| Werner helicase interacting protein 1, isoform CRA_c [Mus musculus] Length = 660 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +EA + + ++ GPPG GKTTLA ++A Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 280 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 339 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 340 VECGTITLIGATTENPSFQVNAALLSRCRVI 370 >gi|323484771|ref|ZP_08090128.1| hypothetical protein HMPREF9474_01879 [Clostridium symbiosum WAL-14163] gi|323401877|gb|EGA94218.1| hypothetical protein HMPREF9474_01879 [Clostridium symbiosum WAL-14163] Length = 444 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 11/156 (7%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 MMD+ L N S +RP TL+ F GQ KV + + + ++F Sbjct: 1 MMDQLSLFD-NRETTSPLASRIRPDTLDGFVGQKHLIGEGKVLRNLIEK--DQVTSMIFW 57 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114 GPPG+GKTTLA+++A + +F S V + ++ ++ E R +LF+DEI Sbjct: 58 GPPGVGKTTLARIIAGKTRSSFIDFSA-VTSGIKEIKTVMEQAEKNRSMGIRTILFVDEI 116 Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 HR + ++ P +E + +++G S +IN Sbjct: 117 HRFNKAQQDAFLPYVEKGSI-ILIGATTENPSFEIN 151 >gi|283784714|ref|YP_003364579.1| ATPase [Citrobacter rodentium ICC168] gi|282948168|emb|CBG87735.1| putative ATPase [Citrobacter rodentium ICC168] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|194435164|ref|ZP_03067397.1| putative DNA recombination-associated ATPase RarA [Shigella dysenteriae 1012] gi|194416602|gb|EDX32738.1| putative DNA recombination-associated ATPase RarA [Shigella dysenteriae 1012] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|204930075|ref|ZP_03221096.1| AAA ATPase, central domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321069|gb|EDZ06270.1| AAA ATPase, central domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|163760830|ref|ZP_02167909.1| hypothetical protein HPDFL43_06787 [Hoeflea phototrophica DFL-43] gi|162281874|gb|EDQ32166.1| hypothetical protein HPDFL43_06787 [Hoeflea phototrophica DFL-43] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL E TGQ + A R + +L ++F GPPG GKTT+A+++A E Sbjct: 21 LRPATLAEVTGQPHLTGP-----DGAITRMIASGSLGSMIFWGPPGTGKTTVARLLAGET 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 + F S + + DL + R +LF+DEIHR + ++ P MED Sbjct: 76 DLAFDQISA-IFSGVADLKKVFETARARRMGGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 134 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 135 TI-VLVGATTENPSFELN 151 >gi|127512950|ref|YP_001094147.1| recombination factor protein RarA [Shewanella loihica PV-4] gi|126638245|gb|ABO23888.1| AAA ATPase, central domain protein [Shewanella loihica PV-4] Length = 443 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 24/218 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP TL ++ GQ K +A +A RA ++ +F GPPG GKTTLA++VA Sbjct: 19 MRPETLSQYIGQDHLLGEGKPLRQALEAGRAHSM---MFWGPPGTGKTTLAELVAHYANA 75 Query: 81 NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + S V + ++ A + + + R +LF+DE+HR + ++ P +ED Sbjct: 76 HVERISA-VTSGVKEIRAAIEHAKSVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGT 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + + +G S +IN + + RV L+ LQD I I +ED + Sbjct: 135 V-IFIGATTENPSFEIN----NALLSRARVYLIKR-LQDEEIIKIVRQ--ALED----GE 182 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231 RG L + +E A ++A G R A L+ + D Sbjct: 183 RGLGKRQLKMPNEVAGKLASLCDGDARKALNLIELMSD 220 >gi|74311450|ref|YP_309869.1| recombination factor protein RarA [Shigella sonnei Ss046] gi|157159331|ref|YP_001462090.1| recombination factor protein RarA [Escherichia coli E24377A] gi|218694365|ref|YP_002402032.1| recombination factor protein RarA [Escherichia coli 55989] gi|260854183|ref|YP_003228074.1| recombination protein [Escherichia coli O26:H11 str. 11368] gi|260867064|ref|YP_003233466.1| recombination protein [Escherichia coli O111:H- str. 11128] gi|307311721|ref|ZP_07591361.1| AAA ATPase central domain protein [Escherichia coli W] gi|73854927|gb|AAZ87634.1| putative polynucleotide enzyme [Shigella sonnei Ss046] gi|157081361|gb|ABV21069.1| putative DNA recombination-associated ATPase RarA [Escherichia coli E24377A] gi|218351097|emb|CAU96801.1| recombination protein [Escherichia coli 55989] gi|257752832|dbj|BAI24334.1| recombination protein [Escherichia coli O26:H11 str. 11368] gi|257763420|dbj|BAI34915.1| recombination protein [Escherichia coli O111:H- str. 11128] gi|306908276|gb|EFN38775.1| AAA ATPase central domain protein [Escherichia coli W] gi|315060177|gb|ADT74504.1| recombination protein [Escherichia coli W] gi|323157222|gb|EFZ43345.1| magnesium chelatase, subunit ChlI family protein [Escherichia coli EPECa14] gi|323165353|gb|EFZ51140.1| magnesium chelatase, subunit ChlI family protein [Shigella sonnei 53G] gi|323172136|gb|EFZ57774.1| magnesium chelatase, subunit ChlI family protein [Escherichia coli LT-68] gi|323379266|gb|ADX51534.1| AAA ATPase central domain protein [Escherichia coli KO11] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|302335915|ref|YP_003801122.1| Recombination protein MgsA [Olsenella uli DSM 7084] gi|301319755|gb|ADK68242.1| Recombination protein MgsA [Olsenella uli DSM 7084] Length = 462 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 35/230 (15%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL+ F GQ +A S L+ IE + L VL GP G GKTTLA+++A Sbjct: 23 VRPQTLDGFVGQRQAVGEGSWLRRAIEH-----DTLSSVLLYGPAGTGKTTLARIIANTT 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F S V DL + E R +LF+DEIHR + ++ L A+ED Sbjct: 78 HAEFVEVSA-VTGTVRDLRREIDAAESRLLASGRRTILFVDEIHRFNRTQQDALLHAVED 136 Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLIAAT------TRVGLLTNPLQDRFGI--PIRL 180 + ++VG ++N +SR ++ T R+ L+ + D FG+ L Sbjct: 137 RTV-VLVGATTENPYFEVNSALISRSRVVELTPLDDEAVRL-LVRRAVDDEFGLNGAFEL 194 Query: 181 NFYEIEDLKTIVQRG--AKLTGLAVTDEAAC---EIAMRSRGTP-RIAGR 224 + IE++ T+ A LT L + + A ++A +R +P RI R Sbjct: 195 DDEAIEEIVTLSGGDGRAALTSLELASQMAAPAGDVAQATRESPVRITSR 244 >gi|293414174|ref|ZP_06656823.1| replication-associated recombination protein A [Escherichia coli B185] gi|291434232|gb|EFF07205.1| replication-associated recombination protein A [Escherichia coli B185] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|167550366|ref|ZP_02344123.1| AAA ATPase, central domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324653|gb|EDZ12492.1| AAA ATPase, central domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|333008794|gb|EGK28254.1| ATPase family associated with various cellular activities family protein [Shigella flexneri K-272] gi|333020322|gb|EGK39588.1| ATPase family associated with various cellular activities family protein [Shigella flexneri K-227] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|26341102|dbj|BAC34213.1| unnamed protein product [Mus musculus] Length = 660 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +EA + + ++ GPPG GKTTLA ++A Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 280 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 339 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 340 VECGTITLIGATTENPSFQVNAALLSRCRVI 370 >gi|15830231|ref|NP_309004.1| recombination factor protein RarA [Escherichia coli O157:H7 str. Sakai] gi|16128859|ref|NP_415412.1| recombination protein involved in processing recombnation intermediates at replication forks [Escherichia coli str. K-12 substr. MG1655] gi|26246918|ref|NP_752958.1| recombination factor protein RarA [Escherichia coli CFT073] gi|82777586|ref|YP_403935.1| recombination factor protein RarA [Shigella dysenteriae Sd197] gi|89107742|ref|AP_001522.1| recombination protein [Escherichia coli str. K-12 substr. W3110] gi|110641092|ref|YP_668822.1| recombination factor protein RarA [Escherichia coli 536] gi|157160415|ref|YP_001457733.1| recombination factor protein RarA [Escherichia coli HS] gi|168752126|ref|ZP_02777148.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4113] gi|168756983|ref|ZP_02781990.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4401] gi|168762974|ref|ZP_02787981.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4501] gi|168769885|ref|ZP_02794892.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4486] gi|168776257|ref|ZP_02801264.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4196] gi|168783802|ref|ZP_02808809.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4076] gi|168787320|ref|ZP_02812327.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC869] gi|168801426|ref|ZP_02826433.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC508] gi|170080550|ref|YP_001729870.1| recombination protein [Escherichia coli str. K-12 substr. DH10B] gi|170682500|ref|YP_001744278.1| recombination factor protein RarA [Escherichia coli SMS-3-5] gi|191172124|ref|ZP_03033668.1| putative DNA recombination-associated ATPase RarA [Escherichia coli F11] gi|193070763|ref|ZP_03051698.1| putative DNA recombination-associated ATPase RarA [Escherichia coli E110019] gi|194438737|ref|ZP_03070824.1| putative DNA recombination-associated ATPase RarA [Escherichia coli 101-1] gi|195939555|ref|ZP_03084937.1| recombination factor protein RarA [Escherichia coli O157:H7 str. EC4024] gi|208815727|ref|ZP_03256906.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4045] gi|208822111|ref|ZP_03262430.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4042] gi|209397045|ref|YP_002269565.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4115] gi|209918141|ref|YP_002292225.1| recombination factor protein RarA [Escherichia coli SE11] gi|217324512|ref|ZP_03440596.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. TW14588] gi|218548414|ref|YP_002382205.1| recombination factor protein RarA [Escherichia fergusonii ATCC 35469] gi|218688680|ref|YP_002396892.1| recombination factor protein RarA [Escherichia coli ED1a] gi|218704321|ref|YP_002411840.1| recombination factor protein RarA [Escherichia coli UMN026] gi|227884141|ref|ZP_04001946.1| recombination ATPase [Escherichia coli 83972] gi|238900150|ref|YP_002925946.1| recombination protein [Escherichia coli BW2952] gi|253774079|ref|YP_003036910.1| recombination factor protein RarA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161006|ref|YP_003044114.1| recombination factor protein RarA [Escherichia coli B str. REL606] gi|254792092|ref|YP_003076929.1| recombination factor protein RarA [Escherichia coli O157:H7 str. TW14359] gi|256023407|ref|ZP_05437272.1| recombination factor protein RarA [Escherichia sp. 4_1_40B] gi|261227397|ref|ZP_05941678.1| recombination protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256180|ref|ZP_05948713.1| recombination protein [Escherichia coli O157:H7 str. FRIK966] gi|293404199|ref|ZP_06648193.1| recombination factor protein RarA [Escherichia coli FVEC1412] gi|293409270|ref|ZP_06652846.1| conserved hypothetical protein [Escherichia coli B354] gi|297518812|ref|ZP_06937198.1| recombination factor protein RarA [Escherichia coli OP50] gi|298379980|ref|ZP_06989585.1| replication-associated recombination protein A [Escherichia coli FVEC1302] gi|306812652|ref|ZP_07446845.1| recombination factor protein RarA [Escherichia coli NC101] gi|307137520|ref|ZP_07496876.1| recombination factor protein RarA [Escherichia coli H736] gi|309784009|ref|ZP_07678653.1| ATPase family associated with various cellular activities (AAA) family protein [Shigella dysenteriae 1617] gi|331641413|ref|ZP_08342548.1| replication-associated recombination protein A [Escherichia coli H736] gi|331646159|ref|ZP_08347262.1| replication-associated recombination protein A [Escherichia coli M605] gi|331651911|ref|ZP_08352930.1| replication-associated recombination protein A [Escherichia coli M718] gi|331656964|ref|ZP_08357926.1| replication-associated recombination protein A [Escherichia coli TA206] gi|331662307|ref|ZP_08363230.1| replication-associated recombination protein A [Escherichia coli TA143] gi|331667266|ref|ZP_08368131.1| replication-associated recombination protein A [Escherichia coli TA271] gi|331672433|ref|ZP_08373223.1| replication-associated recombination protein A [Escherichia coli TA280] gi|331676679|ref|ZP_08377375.1| replication-associated recombination protein A [Escherichia coli H591] gi|331682401|ref|ZP_08383020.1| replication-associated recombination protein A [Escherichia coli H299] gi|77416799|sp|P0AAZ6|RARA_ECO57 RecName: Full=Replication-associated recombination protein A gi|77416800|sp|P0AAZ5|RARA_ECOL6 RecName: Full=Replication-associated recombination protein A gi|77416801|sp|P0AAZ4|RARA_ECOLI RecName: Full=Replication-associated recombination protein A gi|321160007|pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli Mgsa gi|321160008|pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli Mgsa gi|321160009|pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli Mgsa gi|321160010|pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli Mgsa gi|26107318|gb|AAN79501.1|AE016758_105 Hypothetical protein ycaJ [Escherichia coli CFT073] gi|1787119|gb|AAC73978.1| recombination protein involved in processing recombnation intermediates at replication forks [Escherichia coli str. K-12 substr. MG1655] gi|4062469|dbj|BAA35617.1| recombination protein [Escherichia coli str. K12 substr. W3110] gi|13360436|dbj|BAB34400.1| putative polynucleotide enzyme [Escherichia coli O157:H7 str. Sakai] gi|81241734|gb|ABB62444.1| putative polynucleotide enzyme [Shigella dysenteriae Sd197] gi|110342684|gb|ABG68921.1| putative polynucleotide enzyme [Escherichia coli 536] gi|157066095|gb|ABV05350.1| putative DNA recombination-associated ATPase RarA [Escherichia coli HS] gi|169888385|gb|ACB02092.1| recombination protein [Escherichia coli str. K-12 substr. DH10B] gi|170520218|gb|ACB18396.1| putative DNA recombination-associated ATPase RarA [Escherichia coli SMS-3-5] gi|187768384|gb|EDU32228.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4196] gi|188013952|gb|EDU52074.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4113] gi|188998918|gb|EDU67904.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4076] gi|189355914|gb|EDU74333.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4401] gi|189361172|gb|EDU79591.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4486] gi|189366832|gb|EDU85248.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4501] gi|189372743|gb|EDU91159.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC869] gi|189376426|gb|EDU94842.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC508] gi|190907651|gb|EDV67246.1| putative DNA recombination-associated ATPase RarA [Escherichia coli F11] gi|192955956|gb|EDV86424.1| putative DNA recombination-associated ATPase RarA [Escherichia coli E110019] gi|194422369|gb|EDX38369.1| putative DNA recombination-associated ATPase RarA [Escherichia coli 101-1] gi|208732375|gb|EDZ81063.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4045] gi|208737596|gb|EDZ85279.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4042] gi|209158445|gb|ACI35878.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. EC4115] gi|209775028|gb|ACI85826.1| putative polynucleotide enzyme [Escherichia coli] gi|209775030|gb|ACI85827.1| putative polynucleotide enzyme [Escherichia coli] gi|209775032|gb|ACI85828.1| putative polynucleotide enzyme [Escherichia coli] gi|209775034|gb|ACI85829.1| putative polynucleotide enzyme [Escherichia coli] gi|209775036|gb|ACI85830.1| putative polynucleotide enzyme [Escherichia coli] gi|209911400|dbj|BAG76474.1| putative polynucleotide enzyme [Escherichia coli SE11] gi|217320733|gb|EEC29157.1| putative DNA recombination-associated ATPase RarA [Escherichia coli O157:H7 str. TW14588] gi|218355955|emb|CAQ88571.1| recombination protein [Escherichia fergusonii ATCC 35469] gi|218426244|emb|CAR07069.1| recombination protein [Escherichia coli ED1a] gi|218431418|emb|CAR12296.1| recombination protein [Escherichia coli UMN026] gi|222032626|emb|CAP75365.1| Uncharacterized protein ycaJ [Escherichia coli LF82] gi|227838893|gb|EEJ49359.1| recombination ATPase [Escherichia coli 83972] gi|238863427|gb|ACR65425.1| recombination protein [Escherichia coli BW2952] gi|242376707|emb|CAQ31420.1| recombination factor [Escherichia coli BL21(DE3)] gi|253325123|gb|ACT29725.1| AAA ATPase central domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972907|gb|ACT38578.1| recombination protein [Escherichia coli B str. REL606] gi|253977121|gb|ACT42791.1| recombination protein [Escherichia coli BL21(DE3)] gi|254591492|gb|ACT70853.1| recombination protein [Escherichia coli O157:H7 str. TW14359] gi|260449962|gb|ACX40384.1| AAA ATPase central domain protein [Escherichia coli DH1] gi|284920745|emb|CBG33808.1| putative ATPase [Escherichia coli 042] gi|291428785|gb|EFF01810.1| recombination factor protein RarA [Escherichia coli FVEC1412] gi|291469738|gb|EFF12222.1| conserved hypothetical protein [Escherichia coli B354] gi|298279678|gb|EFI21186.1| replication-associated recombination protein A [Escherichia coli FVEC1302] gi|305853415|gb|EFM53854.1| recombination factor protein RarA [Escherichia coli NC101] gi|307552734|gb|ADN45509.1| hypothetical protein with a putative UvrD-like DNA helicase domain [Escherichia coli ABU 83972] gi|308928152|gb|EFP73615.1| ATPase family associated with various cellular activities (AAA) family protein [Shigella dysenteriae 1617] gi|309701168|emb|CBJ00468.1| putative ATPase [Escherichia coli ETEC H10407] gi|312945415|gb|ADR26242.1| recombination factor protein RarA [Escherichia coli O83:H1 str. NRG 857C] gi|315135540|dbj|BAJ42699.1| recombination factor protein RarA [Escherichia coli DH1] gi|320192621|gb|EFW67262.1| recombination factor protein RarA [Escherichia coli O157:H7 str. EC1212] gi|320202287|gb|EFW76858.1| recombination factor protein RarA [Escherichia coli EC4100B] gi|320637762|gb|EFX07554.1| recombination factor protein RarA [Escherichia coli O157:H7 str. G5101] gi|320642886|gb|EFX12087.1| recombination factor protein RarA [Escherichia coli O157:H- str. 493-89] gi|320648343|gb|EFX16998.1| recombination factor protein RarA [Escherichia coli O157:H- str. H 2687] gi|320654181|gb|EFX22249.1| recombination factor protein RarA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659805|gb|EFX27361.1| recombination factor protein RarA [Escherichia coli O55:H7 str. USDA 5905] gi|320664274|gb|EFX31425.1| recombination factor protein RarA [Escherichia coli O157:H7 str. LSU-61] gi|323937998|gb|EGB34260.1| ATPase [Escherichia coli E1520] gi|323942808|gb|EGB38973.1| ATPase [Escherichia coli E482] gi|323962940|gb|EGB58513.1| ATPase [Escherichia coli H489] gi|323969606|gb|EGB64893.1| ATPase [Escherichia coli TA007] gi|323976721|gb|EGB71809.1| ATPase [Escherichia coli TW10509] gi|324113811|gb|EGC07786.1| ATPase [Escherichia fergusonii B253] gi|326338212|gb|EGD62041.1| recombination factor protein RarA [Escherichia coli O157:H7 str. 1125] gi|326346189|gb|EGD69927.1| recombination factor protein RarA [Escherichia coli O157:H7 str. 1044] gi|330910674|gb|EGH39184.1| ATPase, AAA family [Escherichia coli AA86] gi|331038211|gb|EGI10431.1| replication-associated recombination protein A [Escherichia coli H736] gi|331044911|gb|EGI17038.1| replication-associated recombination protein A [Escherichia coli M605] gi|331050189|gb|EGI22247.1| replication-associated recombination protein A [Escherichia coli M718] gi|331055212|gb|EGI27221.1| replication-associated recombination protein A [Escherichia coli TA206] gi|331060729|gb|EGI32693.1| replication-associated recombination protein A [Escherichia coli TA143] gi|331065622|gb|EGI37515.1| replication-associated recombination protein A [Escherichia coli TA271] gi|331070339|gb|EGI41704.1| replication-associated recombination protein A [Escherichia coli TA280] gi|331075368|gb|EGI46666.1| replication-associated recombination protein A [Escherichia coli H591] gi|331080032|gb|EGI51211.1| replication-associated recombination protein A [Escherichia coli H299] gi|332342281|gb|AEE55615.1| recombination factor protein RarA [Escherichia coli UMNK88] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|15800755|ref|NP_286769.1| recombination factor protein RarA [Escherichia coli O157:H7 EDL933] gi|25329891|pir||G85614 probable polynucleotide enzyme ycaJ [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12514054|gb|AAG55379.1|AE005278_5 putative polynucleotide enzyme [Escherichia coli O157:H7 str. EDL933] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|325496837|gb|EGC94696.1| recombination factor protein RarA [Escherichia fergusonii ECD227] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|297181007|gb|ADI17208.1| ATPase related to the helicase subunit of the holliday junction resolvase [uncultured delta proteobacterium HF0070_10I02] Length = 481 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 28/162 (17%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +++E GQ + + +V +E L +L GPPG GKTTLA+++A ++ Sbjct: 61 MRPTSIDEIVGQDHLIGPDTPFRVALENG-----TLSSLLLWGPPGCGKTTLARLLANKV 115 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + + K D A + LE R +LF+DEIHR + ++ L P +E+ Sbjct: 116 GLKFLQLSAVMDGIKELRKLLDRARDIKTLERRGSLLFVDEIHRWNKAQQDALLPHVEEG 175 Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAAT-TRVGLLT-NPL 170 + L+ E P F +I A +R LLT NPL Sbjct: 176 TVVLIGATTENPG----------FQIIPALRSRCWLLTLNPL 207 >gi|170769294|ref|ZP_02903747.1| putative DNA recombination-associated ATPase RarA [Escherichia albertii TW07627] gi|170121946|gb|EDS90877.1| putative DNA recombination-associated ATPase RarA [Escherichia albertii TW07627] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|168236871|ref|ZP_02661929.1| AAA ATPase, central domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734760|ref|YP_002114014.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710262|gb|ACF89483.1| AAA ATPase, central domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290124|gb|EDY29481.1| AAA ATPase, central domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|170020706|ref|YP_001725660.1| recombination factor protein RarA [Escherichia coli ATCC 8739] gi|312971019|ref|ZP_07785198.1| ATPase family associated with various cellular activities (AAA) family protein [Escherichia coli 1827-70] gi|169755634|gb|ACA78333.1| AAA ATPase central domain protein [Escherichia coli ATCC 8739] gi|310336780|gb|EFQ01947.1| ATPase family associated with various cellular activities (AAA) family protein [Escherichia coli 1827-70] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|118497986|ref|YP_899036.1| ATPase, AAA family [Francisella tularensis subsp. novicida U112] gi|194323209|ref|ZP_03056993.1| ATPase, AAA family protein [Francisella tularensis subsp. novicida FTE] gi|118423892|gb|ABK90282.1| AAA family-ATPase [Francisella novicida U112] gi|194322573|gb|EDX20053.1| ATPase, AAA family protein [Francisella tularensis subsp. novicida FTE] Length = 412 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++++E GQ S + + + + ++ G PG+GKT+LA+++A + Sbjct: 10 IRPQSIDEIVGQEHLLSQHGILTKILAG--DGICSLVLCGKPGVGKTSLARIIASSKKLE 67 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137 F S V + D+ L+T+ + D VLF+DEIHR + ++IL P +E ++ L+ Sbjct: 68 FFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDILLPYVESGKIILIGA 126 Query: 138 VGEGPS--------ARSVKINLSRFTLIA 158 E P+ +R + L R +L+A Sbjct: 127 TTENPTYYLNDALVSRLFILRLKRLSLVA 155 >gi|261868432|ref|YP_003256354.1| recombination factor protein RarA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413764|gb|ACX83135.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 446 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 20/140 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL ++ GQ K +A +A + ++F GPPG GKTTLA+++A + V Sbjct: 20 MRPTTLAQYCGQSHLLGEGKPLRKAIEAGY--VHSMIFWGPPGTGKTTLAEIIAHRINVE 77 Query: 82 FRSTSGPVI-----------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 S AK LA L R + F+DE+HR + ++ P +E Sbjct: 78 VERISAVTSGIKEIREAIDKAKQNKLAGL------RTIFFVDEVHRFNKSQQDAFLPHIE 131 Query: 131 DFQLDLMVGEGPSARSVKIN 150 D + + +G S ++N Sbjct: 132 DGTI-IFIGATTENPSFELN 150 >gi|215486022|ref|YP_002328453.1| recombination factor protein RarA [Escherichia coli O127:H6 str. E2348/69] gi|312969040|ref|ZP_07783247.1| ATPase family associated with various cellular activities (AAA) family protein [Escherichia coli 2362-75] gi|215264094|emb|CAS08436.1| recombination protein [Escherichia coli O127:H6 str. E2348/69] gi|312286442|gb|EFR14355.1| ATPase family associated with various cellular activities (AAA) family protein [Escherichia coli 2362-75] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|24112267|ref|NP_706777.1| recombination factor protein RarA [Shigella flexneri 2a str. 301] gi|30062379|ref|NP_836550.1| recombination factor protein RarA [Shigella flexneri 2a str. 2457T] gi|24051119|gb|AAN42484.1| putative polynucleotide enzyme [Shigella flexneri 2a str. 301] gi|30040625|gb|AAP16356.1| putative polynucleotide enzyme [Shigella flexneri 2a str. 2457T] gi|281600220|gb|ADA73204.1| putative polynucleotide enzyme [Shigella flexneri 2002017] gi|313650196|gb|EFS14608.1| ATPase family associated with various cellular activities (AAA) family protein [Shigella flexneri 2a str. 2457T] gi|332762947|gb|EGJ93197.1| ATPase family associated with various cellular activities family protein [Shigella flexneri K-671] gi|332768070|gb|EGJ98256.1| recombination factor [Shigella flexneri 2930-71] gi|333006695|gb|EGK26194.1| ATPase family associated with various cellular activities family protein [Shigella flexneri VA-6] gi|333021033|gb|EGK40291.1| ATPase family associated with various cellular activities family protein [Shigella flexneri K-304] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|332759806|gb|EGJ90109.1| ATPase family associated with various cellular activities family protein [Shigella flexneri 4343-70] gi|333006990|gb|EGK26485.1| ATPase family associated with various cellular activities family protein [Shigella flexneri K-218] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|319783347|ref|YP_004142823.1| ATPase AAA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169235|gb|ADV12773.1| AAA ATPase central domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 435 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + A R + +L ++F GPPG GKTT+A+++A E Sbjct: 23 LRPRNLGEVVGQEHLTGP-----DGALTRLIGSGSLGSMIFWGPPGTGKTTVARLLAGET 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 + F S V + DL + + + R +LF+DEIHR + ++ P MED Sbjct: 78 SLAFEQISA-VFSGVADLKKVFESAKLRRANGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 136 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 137 TV-VLVGATTENPSFELN 153 >gi|251792120|ref|YP_003006840.1| recombination factor protein RarA [Aggregatibacter aphrophilus NJ8700] gi|247533507|gb|ACS96753.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter aphrophilus NJ8700] Length = 446 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 19/121 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL ++ GQ K +A +A + ++F GPPG GKTTLA+++A+ + Sbjct: 20 MRPTTLAQYCGQSHLLGEGKPLRKAIEA--GYVHSMIFWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRSTSGPVI-----------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 S AK LA L R +LF+DE+HR + ++ P +E Sbjct: 78 VERISAVTSGIKEIRKAIEKAKQNKLAGL------RTILFVDEVHRFNKSQQDAFLPHIE 131 Query: 131 D 131 D Sbjct: 132 D 132 >gi|323215845|gb|EGA00585.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] Length = 466 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|319408738|emb|CBI82395.1| ATPase, AAA family [Bartonella schoenbuchensis R1] Length = 443 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 22/160 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L E GQ L IE+ + ++F GPPG GKTT+A+++A E Sbjct: 24 MRPRSLSEVVGQDHLIGTEGFLSRMIESG-----SFGSMIFWGPPGTGKTTIARLLALET 78 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S + +L + + R +LF+DEIHR + +++ P MED Sbjct: 79 NFAFEQVSA-ICTGVTELKKIFEVAQARFISGCRTLLFVDEIHRFNRAQQDVFLPFMEDG 137 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 + ++VG S ++N A +R +LT L D Sbjct: 138 TV-VLVGATTENPSFELN------SALLSRARVLTFRLHD 170 >gi|313677223|ref|YP_004055219.1| ATPase AAA [Marivirga tractuosa DSM 4126] gi|312943921|gb|ADR23111.1| AAA ATPase central domain protein [Marivirga tractuosa DSM 4126] Length = 425 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 32/253 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVF-IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP LEE GQ V + A+ + ++ +F GPPG+GKTT+A ++A ++ Sbjct: 13 MRPTKLEELVGQQHLVGEKGVLRLTIAQGKVPSM---IFWGPPGVGKTTIANIIANQVKA 69 Query: 81 NFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 F++ S + A D+ ++ + + +LFIDEIHR + ++ L A+E + L + Sbjct: 70 PFQTLSA-ISAGVKDVREVIQRASRSGKIILFIDEIHRFNKSQQDALLGAVEKGVITL-I 127 Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK----TIVQR 194 G S ++N A +R + T L E+EDLK T ++ Sbjct: 128 GATTENPSFEVN------SALLSRCQVYT------------LKALELEDLKGLLNTALEN 169 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTITREIADAALLRL 253 KL L + + + S G R L V D + + K ++ + A R+ Sbjct: 170 DEKLKELNIEIKEYEALIQLSGGDARKLLNLFELVIDAYGKDEKIKITNDQVKEIAQNRM 229 Query: 254 AI-DKMGFDQLDL 265 AI DK G D+ Sbjct: 230 AIYDKSGEQHYDI 242 >gi|108761837|ref|YP_631057.1| recombination factor protein RarA [Myxococcus xanthus DK 1622] gi|108465717|gb|ABF90902.1| ATPase, AAA family [Myxococcus xanthus DK 1622] Length = 444 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 60/119 (50%), Gaps = 14/119 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT +EF GQ L+ IE +A+ LF GPPG+GKTTLA+++A + Sbjct: 24 MRPRTPDEFIGQSHLLGPGRPLRQLIER-----KAIVSSLFWGPPGVGKTTLARMMATGV 78 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S P I + A L N R VLF+DEIHR + V+E P +E Sbjct: 79 DAEFVILSAVSDGIPRIREVVAEAERLRNQYSRRTVLFVDEIHRWAKNVQEQALPHVES 137 >gi|16273484|ref|NP_439735.1| recombination factor protein RarA [Haemophilus influenzae Rd KW20] gi|1175611|sp|P45262|RARA_HAEIN RecName: Full=Replication-associated recombination protein A gi|1574435|gb|AAC23238.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] Length = 446 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++F GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQA--GHIYSMIFWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A D A + + +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|218768257|ref|YP_002342769.1| recombination factor protein RarA [Neisseria meningitidis Z2491] gi|121052265|emb|CAM08593.1| hypothetical protein NMA1433 [Neisseria meningitidis Z2491] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S I +A D A + +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131 Query: 134 LDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153 >gi|256020980|ref|ZP_05434845.1| recombination factor protein RarA [Shigella sp. D9] gi|332282205|ref|ZP_08394618.1| recombination protein [Shigella sp. D9] gi|332104557|gb|EGJ07903.1| recombination protein [Shigella sp. D9] Length = 447 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|254805040|ref|YP_003083261.1| hypothetical protein NMO_1076 [Neisseria meningitidis alpha14] gi|254668582|emb|CBA06099.1| conserved hypothetical protein [Neisseria meningitidis alpha14] Length = 436 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S I +A D A + +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131 Query: 134 LDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153 >gi|228967474|ref|ZP_04128503.1| hypothetical protein bthur0004_42720 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792251|gb|EEM39824.1| hypothetical protein bthur0004_42720 [Bacillus thuringiensis serovar sotto str. T04001] Length = 420 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 130/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 1 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 58 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 59 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 112 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 113 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 152 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + +TDEA A S G R A L + F A IT E Sbjct: 153 RALEDKEKGLGEYAVTITDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 212 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 213 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 257 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 258 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 284 >gi|197250604|ref|YP_002145880.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214307|gb|ACH51704.1| putative DNA recombination-associated ATPase RarA [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 447 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|261415680|ref|YP_003249363.1| AAA ATPase central domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372136|gb|ACX74881.1| AAA ATPase central domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326489|gb|ADL25690.1| ATPase, AAA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 431 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 45/218 (20%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L+EF GQ + + ++ + +++ ++F GPPG GKT+LA V+ + Sbjct: 9 LRPQNLDEFLGQNKILGQQSLLRKSLEN--DSIPSMIFWGPPGCGKTSLAHVIRQHTKKR 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S V+A A + + +LFIDEIHR + ++ L A+ED Sbjct: 67 FVALSAVASGVKEVKEVLADARQMKKAFMDT----ILFIDEIHRFNKGQQDALLGAVEDG 122 Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + L+ E P LSR LI L PL EDL+T Sbjct: 123 TVTLIGATTENPGFEVNGALLSRCQLI--------LFAPLSK-------------EDLRT 161 Query: 191 IV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRI 221 ++ RG +L + V D ++ +S G R Sbjct: 162 LIFSALRDHPRGLQLKDVEVEDSVVDKLIAQSEGDARF 199 >gi|254374800|ref|ZP_04990281.1| hypothetical protein FTDG_00976 [Francisella novicida GA99-3548] gi|151572519|gb|EDN38173.1| hypothetical protein FTDG_00976 [Francisella novicida GA99-3548] Length = 412 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++++E GQ S + + + + ++ G PG+GKT+LA+++A + Sbjct: 10 IRPQSIDEIVGQEHLLSQHGILTKILAG--DGICSLVLCGKPGVGKTSLARIIASSKKLE 67 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137 F S V + D+ L+T+ + D VLF+DEIHR + ++IL P +E ++ L+ Sbjct: 68 FFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDILLPYVESGKIILIGA 126 Query: 138 VGEGPS--------ARSVKINLSRFTLIA 158 E P+ +R + L R +L+A Sbjct: 127 TTENPTYYLNDALVSRLFILRLKRLSLVA 155 >gi|149371615|ref|ZP_01891031.1| putative ATPase, AAA family protein [unidentified eubacterium SCB49] gi|149355242|gb|EDM43802.1| putative ATPase, AAA family protein [unidentified eubacterium SCB49] Length = 425 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+ + Q ++ + ++F GPPG GKTTLA ++A Sbjct: 9 IRPRTLDTYLSQQHLVGKGGSL--TSQIKTGVFSSMIFWGPPGTGKTTLASIIAETSDRP 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VIAKA L T +LFIDEIHR S ++ L A+E Sbjct: 67 FYTLSAIDSGVAAVREVIAKAKQGDGLFTT--KNPILFIDEIHRFSKSQQDSLLGAVEKG 124 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147 >gi|191167587|ref|ZP_03029398.1| putative DNA recombination-associated ATPase RarA [Escherichia coli B7A] gi|190902348|gb|EDV62086.1| putative DNA recombination-associated ATPase RarA [Escherichia coli B7A] Length = 447 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|310767170|gb|ADP12120.1| recombination factor protein RarA [Erwinia sp. Ejp617] Length = 447 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 17/146 (11%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 SRN Q A + +RPRTL E+ GQ + A L IEA L ++ GPPG Sbjct: 8 FSRNEFQPLA--ARMRPRTLAEYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPG 60 Query: 65 LGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GKTTLA+++ R + TSG I +A + A + R +LF+DE+HR + Sbjct: 61 TGKTTLAEIIGRYGQADVERISAVTSGVKEIREAIERARQNRHAGRRTILFVDEVHRFNK 120 Query: 120 IVEEILYPAMEDFQLDLM--VGEGPS 143 ++ P +ED + + E PS Sbjct: 121 SQQDAFLPHIEDGTITFIGATTENPS 146 >gi|255283517|ref|ZP_05348072.1| replication-associated recombination protein A [Bryantella formatexigens DSM 14469] gi|255265974|gb|EET59179.1| replication-associated recombination protein A [Bryantella formatexigens DSM 14469] Length = 468 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 16/140 (11%) Query: 20 SLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S LRP LE+F GQ L+ IE + + ++F GPPG+GKTTLA ++A Sbjct: 40 SRLRPERLEDFVGQEHLLGPGKMLRRLIEE-----DQISSMIFWGPPGVGKTTLAGIIAA 94 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V + ++ ++ E+ R VLF+DEIHR + ++ P +E Sbjct: 95 HTKAEFINFSA-VTSGIKEIKEVMQQAENSRRMGRRTVLFVDEIHRFNKAQQDAFLPFVE 153 Query: 131 DFQLDLMVGEGPSARSVKIN 150 + +++G S ++N Sbjct: 154 KGSI-ILIGATTENPSFEVN 172 >gi|39936283|ref|NP_948559.1| recombination factor protein RarA [Rhodopseudomonas palustris CGA009] gi|39650138|emb|CAE28661.1| AAA ATPase [Rhodopseudomonas palustris CGA009] Length = 443 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L + GQ + R L ++F GPPG GKTT+A+++A + Sbjct: 30 LRPRSLADVVGQDHILGPDGALTRMLQTRT--LGSLVFWGPPGTGKTTVARLLADATELQ 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + R +LF+DE+HR + ++ P MED + Sbjct: 88 FEQISA-VFSGVADLKKVFDAARARREMGKGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145 Query: 136 LMVGEGPSARSVKIN 150 +MVG S ++N Sbjct: 146 VMVGATTENPSFELN 160 >gi|237785603|ref|YP_002906308.1| hypothetical protein ckrop_1012 [Corynebacterium kroppenstedtii DSM 44385] gi|237758515|gb|ACR17765.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM 44385] Length = 459 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 116/265 (43%), Gaps = 53/265 (20%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L+E GQ S L+ +E A + V+ GPPG GKTT+A +V+ Sbjct: 43 MRPRNLDEVVGQEHVLGQGSPLRRLVEGAGDSS-----VILFGPPGTGKTTIASLVSSTT 97 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 G FR S + + ++ ++L + VLFIDE+HR S ++ L A+E+ Sbjct: 98 GRRFRVLSA-LSSGVKEIRSVLKEARQALIDGVQTVLFIDEVHRFSKTQQDALLAAVENR 156 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + L+ E P+ V LSR L+ PL D E ++T Sbjct: 157 TVLLVAATTENPNFAVVGPLLSRSLLVQ--------LEPLDD-------------EAIRT 195 Query: 191 IVQRG-AKLTGLA----VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTITRE 244 ++ R + GLA + D+A I + G R R L V A+ + +TIT E Sbjct: 196 VINRSVSSQRGLAGRIRIDDDAVNSIVAMAGGDAR---RALTYVEASAQSLDDGETITPE 252 Query: 245 I----ADAALLRLAIDKMGFDQLDL 265 I D AL++ D+ G D+ Sbjct: 253 IVANNVDRALVKY--DRDGDQHYDV 275 >gi|192292006|ref|YP_001992611.1| recombination factor protein RarA [Rhodopseudomonas palustris TIE-1] gi|192285755|gb|ACF02136.1| AAA ATPase central domain protein [Rhodopseudomonas palustris TIE-1] Length = 443 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L + GQ + R L ++F GPPG GKTT+A+++A + Sbjct: 30 LRPRSLADVVGQDHILGPDGALTRMLQTRT--LGSLVFWGPPGTGKTTVARLLADATELQ 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + R +LF+DE+HR + ++ P MED + Sbjct: 88 FEQISA-VFSGVADLKKVFDAARARREMGKGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145 Query: 136 LMVGEGPSARSVKIN 150 +MVG S ++N Sbjct: 146 VMVGATTENPSFELN 160 >gi|154706961|ref|YP_001424634.1| recombination factor protein RarA [Coxiella burnetii Dugway 5J108-111] gi|154356247|gb|ABS77709.1| ATPase, AAA family [Coxiella burnetii Dugway 5J108-111] Length = 440 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LEEF GQ K A + L ++ GPPG GKTTLA+++A++ G Sbjct: 14 MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIMAQKAGAR 71 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 S S V+A D+ ++ E +LF+DE+H + ++ P +E + L+ Sbjct: 72 VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 130 Query: 138 --VGEGPSARSVKINLSR 153 E PS + LSR Sbjct: 131 GATTENPSFQLNNALLSR 148 >gi|312868678|ref|ZP_07728871.1| putative recombination factor protein RarA [Lactobacillus oris PB013-T2-3] gi|311095792|gb|EFQ54043.1| putative recombination factor protein RarA [Lactobacillus oris PB013-T2-3] Length = 170 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP TLE+ GQ + + + +L GPPG GKTTLA V+++ L + Sbjct: 10 LMRPTTLEQMVGQEHLLAPGRPLYQIITEHLSV--SLLLWGPPGSGKTTLAYVMSQTLQL 67 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 F + + K+ + + ++ VL +DEIHRL+ +++ L P +E+ + L+VG Sbjct: 68 PFEKFNASIQNKSQLQKLVDAHPDESFVLLLDEIHRLTKPLQDYLLPYLENGHI-LLVG 125 >gi|254673529|emb|CBA08975.1| conserved hypothetical protein [Neisseria meningitidis alpha275] Length = 436 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S I +A D A + +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131 Query: 134 LDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153 >gi|212218615|ref|YP_002305402.1| recombination factor protein RarA [Coxiella burnetii CbuK_Q154] gi|212012877|gb|ACJ20257.1| ATPase, AAA family [Coxiella burnetii CbuK_Q154] Length = 427 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LEEF GQ K A + L ++ GPPG GKTTLA+++A++ G Sbjct: 1 MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIMAQKAGAR 58 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 S S V+A D+ ++ E +LF+DE+H + ++ P +E + L+ Sbjct: 59 VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 117 Query: 138 --VGEGPSARSVKINLSR 153 E PS + LSR Sbjct: 118 GATTENPSFQLNNALLSR 135 >gi|296313690|ref|ZP_06863631.1| replication-associated recombination protein A [Neisseria polysaccharea ATCC 43768] gi|296839751|gb|EFH23689.1| replication-associated recombination protein A [Neisseria polysaccharea ATCC 43768] Length = 436 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S I +A D A + +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131 Query: 134 LDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153 >gi|261401234|ref|ZP_05987359.1| replication-associated recombination protein A [Neisseria lactamica ATCC 23970] gi|269208822|gb|EEZ75277.1| replication-associated recombination protein A [Neisseria lactamica ATCC 23970] Length = 436 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V + D+ + E +LF+DE+HR + ++ P +E+ Sbjct: 72 NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVENG 130 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153 >gi|226193735|ref|ZP_03789337.1| ATPase, AAA family [Burkholderia pseudomallei Pakistan 9] gi|254298872|ref|ZP_04966322.1| ATPase, AAA family [Burkholderia pseudomallei 406e] gi|157809189|gb|EDO86359.1| ATPase, AAA family [Burkholderia pseudomallei 406e] gi|225934040|gb|EEH30025.1| ATPase, AAA family [Burkholderia pseudomallei Pakistan 9] Length = 485 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 58/326 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 66 LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 120 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + D +LF+DEIHR + ++ L P +E Sbjct: 121 DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 179 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + +D +L+ + Sbjct: 180 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 220 Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 ++R L GLA D+A + + G R LL + + A A TI DAA Sbjct: 221 LKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 275 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 + A +TM AR F GG + ISA R + D ++ + Sbjct: 276 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 322 Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332 P+ R ++ +AW+ +G+ P Sbjct: 323 DGGADPKYLARRVVRMAWEDIGLADP 348 >gi|15677127|ref|NP_274280.1| recombination factor protein RarA [Neisseria meningitidis MC58] gi|7226497|gb|AAF41636.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|254671375|emb|CBA08828.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|316984713|gb|EFV63674.1| magnesium chelatase, subunit ChlI family protein [Neisseria meningitidis H44/76] gi|325134496|gb|EGC57141.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M13399] gi|325140513|gb|EGC63034.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis CU385] gi|325200112|gb|ADY95567.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis H44/76] Length = 436 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S I +A D A + +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131 Query: 134 LDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153 >gi|332760457|gb|EGJ90746.1| ATPase family associated with various cellular activities family protein [Shigella flexneri 2747-71] Length = 447 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|161870104|ref|YP_001599274.1| recombination factor protein RarA [Neisseria meningitidis 053442] gi|161595657|gb|ABX73317.1| putative ATPase [Neisseria meningitidis 053442] Length = 436 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S I +A D A + +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131 Query: 134 LDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153 >gi|161485713|ref|NP_642336.2| recombination factor protein RarA [Xanthomonas axonopodis pv. citri str. 306] Length = 457 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 29 MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F++ S V++ D+ +L R VLF+DE+HR + ++ P +E Sbjct: 84 DAEFKAISA-VLSGLPDVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERG 142 Query: 133 QLDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 143 TI-LFVGATTENPSFELN 159 >gi|164685937|ref|ZP_01946864.2| ATPase, AAA family [Coxiella burnetii 'MSU Goat Q177'] gi|165919023|ref|ZP_02219109.1| ATPase, AAA family [Coxiella burnetii RSA 334] gi|164601458|gb|EAX32492.2| ATPase, AAA family [Coxiella burnetii 'MSU Goat Q177'] gi|165917278|gb|EDR35882.1| ATPase, AAA family [Coxiella burnetii RSA 334] Length = 440 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LEEF GQ K A + L ++ GPPG GKTTLA+++A++ G Sbjct: 14 MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIMAQKAGAR 71 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 S S V+A D+ ++ E +LF+DE+H + ++ P +E + L+ Sbjct: 72 VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 130 Query: 138 --VGEGPSARSVKINLSR 153 E PS + LSR Sbjct: 131 GATTENPSFQLNNALLSR 148 >gi|227889733|ref|ZP_04007538.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii ATCC 33200] gi|227849597|gb|EEJ59683.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii ATCC 33200] Length = 431 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 17/117 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ N K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 8 MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + +IA+ G ++ + +L +DEIHRL ++ L P +E Sbjct: 66 FRKLNAATDTKKDLQIIAEEGKMSGTV-------ILLLDEIHRLDKPKQDFLLPLLE 115 >gi|325128338|gb|EGC51222.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis N1568] Length = 436 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S I +A D A + +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131 Query: 134 LDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153 >gi|302337812|ref|YP_003803018.1| ATPase AAA [Spirochaeta smaragdinae DSM 11293] gi|301634997|gb|ADK80424.1| AAA ATPase central domain protein [Spirochaeta smaragdinae DSM 11293] Length = 735 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 11/133 (8%) Query: 7 LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65 L S S E A ++ + PR L+E+ GQ ++ +A + L ++F GPPG Sbjct: 3 LFSAAESNEKAPLAYRMSPRNLDEYIGQSHIVGPGRLLRRVIQA--DRLSSLIFYGPPGC 60 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLS 118 GKT LA+V+A F T V++ +L +++ ++R +LF+DE+HR + Sbjct: 61 GKTALARVIAGTTKSAF-DTLNAVLSGVKELRQSISSAKERKELYDKRTILFVDEVHRWN 119 Query: 119 IIVEEILYPAMED 131 ++ L P +E+ Sbjct: 120 KAQQDALLPWVEN 132 >gi|294671065|ref|ZP_06735920.1| hypothetical protein NEIELOOT_02773 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307173|gb|EFE48416.1| hypothetical protein NEIELOOT_02773 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 441 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 16/151 (10%) Query: 14 QEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 Q DA ++ LRP TL++ GQ + L+V +E K + +L GPPG+GKTT Sbjct: 8 QPDAPLAERLRPHTLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTT 62 Query: 70 LAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LA+++A+ F S I +A D A + +LF+DE+HR + ++ Sbjct: 63 LARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122 Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSR 153 P +E L + E PS LSR Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSR 153 >gi|284007597|emb|CBA73185.1| recombination factor protein RarA [Arsenophonus nasoniae] Length = 455 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 94/221 (42%), Gaps = 23/221 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE++ GQ +N K A RA L ++ GP G GKTTLA+++ Sbjct: 28 MRPINLEQYIGQQHLLANNKPLARAI--RAGQLHSMILWGPAGTGKTTLAEIIGHYADAA 85 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I ++ ++A L R +LF+DE+HR + ++ P +ED + Sbjct: 86 IEKISAVTSGIKEIRESIEIARQNRQLGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 145 Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + E PS LSR RV LL + + + ++ + QR Sbjct: 146 IGATTENPSFELNSALLSR-------ARVYLLKSLANEEIAMVLQQAMAD-------SQR 191 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235 G + + D+ IA G R A LL + D AE+ Sbjct: 192 GYGGQKIILPDDTRDMIAQLVNGDARRALNLLEMMVDMAEI 232 >gi|15609696|ref|NP_217075.1| recombination factor protein RarA [Mycobacterium tuberculosis H37Rv] gi|15842097|ref|NP_337134.1| recombination factor protein RarA [Mycobacterium tuberculosis CDC1551] gi|148662398|ref|YP_001283921.1| recombination factor protein RarA [Mycobacterium tuberculosis H37Ra] gi|148823755|ref|YP_001288509.1| recombination factor protein RarA [Mycobacterium tuberculosis F11] gi|167968830|ref|ZP_02551107.1| recombination factor protein RarA [Mycobacterium tuberculosis H37Ra] gi|215404508|ref|ZP_03416689.1| recombination factor protein RarA [Mycobacterium tuberculosis 02_1987] gi|215412332|ref|ZP_03421092.1| recombination factor protein RarA [Mycobacterium tuberculosis 94_M4241A] gi|215446810|ref|ZP_03433562.1| recombination factor protein RarA [Mycobacterium tuberculosis T85] gi|218754298|ref|ZP_03533094.1| recombination factor protein RarA [Mycobacterium tuberculosis GM 1503] gi|253798360|ref|YP_003031361.1| hypothetical protein TBMG_01413 [Mycobacterium tuberculosis KZN 1435] gi|254232680|ref|ZP_04926007.1| conserved hypothetical alanine leucine valine rich protein [Mycobacterium tuberculosis C] gi|254551610|ref|ZP_05142057.1| recombination factor protein RarA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289553651|ref|ZP_06442861.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis KZN 605] gi|289746351|ref|ZP_06505729.1| recombination factor protein RarA [Mycobacterium tuberculosis 02_1987] gi|289758688|ref|ZP_06518066.1| recombination factor protein RarA [Mycobacterium tuberculosis T85] gi|289762729|ref|ZP_06522107.1| conserved hypothetical alanine leucine valine rich protein [Mycobacterium tuberculosis GM 1503] gi|294994330|ref|ZP_06800021.1| recombination factor protein RarA [Mycobacterium tuberculosis 210] gi|297635170|ref|ZP_06952950.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN 4207] gi|297732162|ref|ZP_06961280.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN R506] gi|298526033|ref|ZP_07013442.1| conserved hypothetical alanine leucine valine rich protein [Mycobacterium tuberculosis 94_M4241A] gi|306776833|ref|ZP_07415170.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu001] gi|306780598|ref|ZP_07418935.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu002] gi|306785361|ref|ZP_07423683.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu003] gi|306789961|ref|ZP_07428283.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu004] gi|306794041|ref|ZP_07432343.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu005] gi|306798440|ref|ZP_07436742.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu006] gi|306804319|ref|ZP_07440987.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu008] gi|306807642|ref|ZP_07444310.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu007] gi|306969843|ref|ZP_07482504.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu009] gi|306972948|ref|ZP_07485609.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu010] gi|307080659|ref|ZP_07489829.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu011] gi|307085246|ref|ZP_07494359.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu012] gi|313659496|ref|ZP_07816376.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN V2475] gi|2496491|sp|Q50739|Y2559_MYCTU RecName: Full=Uncharacterized AAA domain-containing protein Rv2559c/MT2636 gi|1460081|emb|CAB01045.1| CONSERVED HYPOTHETICAL ALANINE LEUCINE VALINE RICH PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13882379|gb|AAK46948.1| ATPase, AAA family [Mycobacterium tuberculosis CDC1551] gi|124601739|gb|EAY60749.1| conserved hypothetical alanine leucine valine rich protein [Mycobacterium tuberculosis C] gi|148506550|gb|ABQ74359.1| conserved hypothetical alanine,leucine and valine rich protein [Mycobacterium tuberculosis H37Ra] gi|148722282|gb|ABR06907.1| conserved alanine, leucine and valine rich protein [Mycobacterium tuberculosis F11] gi|253319863|gb|ACT24466.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis KZN 1435] gi|289438283|gb|EFD20776.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis KZN 605] gi|289686879|gb|EFD54367.1| recombination factor protein RarA [Mycobacterium tuberculosis 02_1987] gi|289710235|gb|EFD74251.1| conserved hypothetical alanine leucine valine rich protein [Mycobacterium tuberculosis GM 1503] gi|289714252|gb|EFD78264.1| recombination factor protein RarA [Mycobacterium tuberculosis T85] gi|298495827|gb|EFI31121.1| conserved hypothetical alanine leucine valine rich protein [Mycobacterium tuberculosis 94_M4241A] gi|308214760|gb|EFO74159.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu001] gi|308326532|gb|EFP15383.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu002] gi|308329953|gb|EFP18804.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu003] gi|308333570|gb|EFP22421.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu004] gi|308337597|gb|EFP26448.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu005] gi|308341263|gb|EFP30114.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu006] gi|308345964|gb|EFP34815.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu007] gi|308349070|gb|EFP37921.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu008] gi|308352653|gb|EFP41504.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu009] gi|308357638|gb|EFP46489.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu010] gi|308361580|gb|EFP50431.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu011] gi|308365200|gb|EFP54051.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu012] gi|323718832|gb|EGB27988.1| hypothetical protein TMMG_02570 [Mycobacterium tuberculosis CDC1551A] gi|326904174|gb|EGE51107.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis W-148] gi|328458130|gb|AEB03553.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis KZN 4207] Length = 452 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 38/184 (20%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + S L+ +E + + V+ GPPG GKTTLA ++++ Sbjct: 35 MRPASLDEVVGQDHLLAPGSPLRRLVEGS-----GVASVILYGPPGSGKTTLAALISQAT 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A ++ A++ N ++ VLFIDE+HR S ++ L A+E Sbjct: 90 GRRFEALSA-LSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEHR 148 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + L+ E PS F+++A PL R I ++L ED + Sbjct: 149 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLTAEDTRA 187 Query: 191 IVQR 194 +VQR Sbjct: 188 VVQR 191 >gi|319410506|emb|CBY90869.1| putative ATPase [Neisseria meningitidis WUE 2594] Length = 436 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S I +A D A + +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131 Query: 134 LDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153 >gi|298368871|ref|ZP_06980189.1| magnesium chelatase, subunit ChlI family [Neisseria sp. oral taxon 014 str. F0314] gi|298282874|gb|EFI24361.1| magnesium chelatase, subunit ChlI family [Neisseria sp. oral taxon 014 str. F0314] Length = 435 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 16/151 (10%) Query: 14 QEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 Q DA ++ LRP TL++ GQ + L+V +E K + +L GPPG+GKTT Sbjct: 8 QPDAPLAERLRPHTLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTT 62 Query: 70 LAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LA+++A+ F S I +A D A + +LF+DE+HR + ++ Sbjct: 63 LARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRTTILFVDEVHRFNKAQQDA 122 Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSR 153 P +E L + E PS LSR Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSR 153 >gi|325144597|gb|EGC66896.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M01-240013] Length = 436 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S I +A D A + +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131 Query: 134 LDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153 >gi|303232661|ref|ZP_07319346.1| recombination factor protein RarA [Atopobium vaginae PB189-T1-4] gi|302481147|gb|EFL44222.1| recombination factor protein RarA [Atopobium vaginae PB189-T1-4] Length = 471 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L+E++GQ +A S L+ IE + + ++ GP G GKTTLA ++AR Sbjct: 34 MRPRNLDEYSGQTQAVGEHSWLRRAIEH-----DTVTSIILYGPSGTGKTTLAHIIARYT 88 Query: 79 GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + + S + A D+ ++ L R +LF+DEIHR + ++ L A+E Sbjct: 89 HAHVVTMSA-ISATVKDVRDTISTASSRLYTRRQRTILFLDEIHRFNRSQQDALLEAVE 146 >gi|290510640|ref|ZP_06550010.1| ATPase [Klebsiella sp. 1_1_55] gi|289777356|gb|EFD85354.1| ATPase [Klebsiella sp. 1_1_55] Length = 447 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + K A +A L ++ GPPG GKTTLA+V+AR + Sbjct: 20 MRPENLAQYIGQQHLLAPGKPLQRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYASAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A N R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|152969481|ref|YP_001334590.1| recombination factor protein RarA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|329998191|ref|ZP_08303003.1| replication-associated recombination protein A [Klebsiella sp. MS 92-3] gi|150954330|gb|ABR76360.1| putative polynucleotide enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328538806|gb|EGF64881.1| replication-associated recombination protein A [Klebsiella sp. MS 92-3] Length = 447 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + K A +A L ++ GPPG GKTTLA+V+AR + Sbjct: 20 MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYASAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A N R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|83749188|ref|ZP_00946190.1| ATPase, AAA family [Ralstonia solanacearum UW551] gi|207742684|ref|YP_002259076.1| cog2256 atpase related to the helicase subunit of the holliday junction resolvase protein [Ralstonia solanacearum IPO1609] gi|83724129|gb|EAP71305.1| ATPase, AAA family [Ralstonia solanacearum UW551] gi|206594078|emb|CAQ61005.1| probable cog2256 atpase related to the helicase subunit of the holliday junction resolvase protein [Ralstonia solanacearum IPO1609] Length = 435 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E GQ + L++ ++ K + ++F GPPG+GKTTLA++ A Sbjct: 17 LRPKTLDEVIGQSHLLGDGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTATAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130 F + S V + D+ A + + +LF+DEIHR + ++ L P E Sbjct: 72 KCEFIALSA-VFSGVKDIRAAMEQAQQNLSMGKSTILFVDEIHRFNKSQQDALLPYAE 128 >gi|325205964|gb|ADZ01417.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M04-240196] Length = 436 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S I +A D A + +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131 Query: 134 LDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153 >gi|326318083|ref|YP_004235755.1| AAA ATPase central domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374919|gb|ADX47188.1| AAA ATPase central domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 434 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E GQ L++ ++ K + ++F GPPG+GKTTLA++ A Sbjct: 17 LRPKTLDEVVGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTATAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V + D+ A + + +LF+DEIHR + ++ L P E Sbjct: 72 KCEFIALSA-VFSGVKDIRAAMEQAQQNLAMGKHTILFVDEIHRFNKSQQDALLPYAE 128 >gi|121634950|ref|YP_975195.1| recombination factor protein RarA [Neisseria meningitidis FAM18] gi|120866656|emb|CAM10407.1| hypothetical protein NMC1159 [Neisseria meningitidis FAM18] gi|325132559|gb|EGC55252.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M6190] gi|325138333|gb|EGC60902.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis ES14902] Length = 436 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S I +A D A + +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131 Query: 134 LDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153 >gi|31793742|ref|NP_856235.1| recombination factor protein RarA [Mycobacterium bovis AF2122/97] gi|121638444|ref|YP_978668.1| recombination factor protein RarA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215427955|ref|ZP_03425874.1| recombination factor protein RarA [Mycobacterium tuberculosis T92] gi|215431517|ref|ZP_03429436.1| recombination factor protein RarA [Mycobacterium tuberculosis EAS054] gi|219558563|ref|ZP_03537639.1| recombination factor protein RarA [Mycobacterium tuberculosis T17] gi|224990938|ref|YP_002645625.1| recombination factor protein [Mycobacterium bovis BCG str. Tokyo 172] gi|260187574|ref|ZP_05765048.1| recombination factor protein RarA [Mycobacterium tuberculosis CPHL_A] gi|260201686|ref|ZP_05769177.1| recombination factor protein RarA [Mycobacterium tuberculosis T46] gi|260205881|ref|ZP_05773372.1| recombination factor protein RarA [Mycobacterium tuberculosis K85] gi|289444095|ref|ZP_06433839.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis T46] gi|289448208|ref|ZP_06437952.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis CPHL_A] gi|289570728|ref|ZP_06450955.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis T17] gi|289575267|ref|ZP_06455494.1| recombination factor protein RarA [Mycobacterium tuberculosis K85] gi|289751178|ref|ZP_06510556.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis T92] gi|289754677|ref|ZP_06514055.1| recombination factor protein RarA [Mycobacterium tuberculosis EAS054] gi|31619336|emb|CAD94774.1| CONSERVED HYPOTHETICAL ALANINE LEUCINE VALINE RICH PROTEIN [Mycobacterium bovis AF2122/97] gi|121494092|emb|CAL72570.1| Conserved hypothetical alanine leucine valine rich protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774051|dbj|BAH26857.1| recombination factor protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289417014|gb|EFD14254.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis T46] gi|289421166|gb|EFD18367.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis CPHL_A] gi|289539698|gb|EFD44276.1| recombination factor protein RarA [Mycobacterium tuberculosis K85] gi|289544482|gb|EFD48130.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis T17] gi|289691765|gb|EFD59194.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis T92] gi|289695264|gb|EFD62693.1| recombination factor protein RarA [Mycobacterium tuberculosis EAS054] Length = 452 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 38/184 (20%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + S L+ +E + + V+ GPPG GKTTLA ++++ Sbjct: 35 MRPASLDEVVGQDHLLAPGSPLRRLVEGS-----GVASVILYGPPGSGKTTLAALISQAT 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A ++ A++ N ++ VLFIDE+HR S ++ L A+E Sbjct: 90 GRRFEALSA-LSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEHR 148 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + L+ E PS F+++A PL R I ++L ED + Sbjct: 149 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLTAEDTRA 187 Query: 191 IVQR 194 +VQR Sbjct: 188 VVQR 191 >gi|224826932|ref|ZP_03700031.1| AAA ATPase central domain protein [Lutiella nitroferrum 2002] gi|224600919|gb|EEG07103.1| AAA ATPase central domain protein [Lutiella nitroferrum 2002] Length = 439 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 84/328 (25%), Positives = 129/328 (39%), Gaps = 61/328 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L+E GQ + L++ +E+ + ++ GPPG+GKTTLA+++A Sbjct: 17 LRPTSLDEVIGQPHLIGPGKPLRLAVESKTPHS-----MILWGPPGVGKTTLARILAHSF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 F S I +A D A + + R +LF+DE+HR + ++ P +E Sbjct: 72 DAEFIPLSAVFSGVKDIREAVDRAQAVLQRDGRHTILFVDEVHRFNKSQQDAFLPYVESG 131 Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 L + E PS LSR + + N L D +D K Sbjct: 132 LLTFIGATTENPSFEVNSALLSRAQVY--------VLNALAD-------------DDFKA 170 Query: 191 IVQRG---AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 + R L GL D A ++ + G R LL + R A H + I D Sbjct: 171 LFARAVASGALPGLTFDDSALATLSGYADGDARRFLNLLEQTRTAASARHVEHI-----D 225 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 A L LT+ AR F GG + ISA R + D ++ + Sbjct: 226 ADFL-------------AEVLTVNARRFDKGGDAFYDQISALHKSVRGSSPDGALYWLTR 272 Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332 PR R L+ +AW+ +G+ P Sbjct: 273 MLDGGADPRYLARRLVRMAWEDIGLADP 300 >gi|14349164|dbj|BAB60708.1| Werner helicase interacting protein [Mus musculus] Length = 660 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +EA + + ++ GPPG GKTTLA ++A Sbjct: 226 MRPDTLQDYIGQSRAVGEETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 280 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 339 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 340 VECGTITLIGATTENPSFQVNAALLSRCRVI 370 >gi|313202726|ref|YP_004041383.1| recombination protein mgsa [Paludibacter propionicigenes WB4] gi|312442042|gb|ADQ78398.1| Recombination protein MgsA [Paludibacter propionicigenes WB4] Length = 421 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+ + GQ V + L+ IE+ + + GPPG+GKTTLA+++A +L Sbjct: 8 LRPQTLDNYIGQKHLVGENAILRKMIESGHVAS-----FILWGPPGVGKTTLAKIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E+ Sbjct: 63 DRPFYTLSA-VTSGVKDVREVIEKAKANRFFSQANPILFIDEIHRFSKSQQDSLLGAVEN 121 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 122 GTVTLIGATTENPSFEVITPLLSR 145 >gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571] gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571] Length = 324 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 39/214 (18%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78 RP+TL++ GQ E + LK +++ +L H+LF GP G+GKTT A +ARE Sbjct: 13 RPKTLDDVVGQKEIVARLKSYVKTG-----SLPHLLFTGPAGIGKTTSAVALAREFFGEN 67 Query: 79 -GVNFRSTSGP-------VIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 VNFR + V + A A + E + +LF+DE L+ + L Sbjct: 68 WQVNFRELNASDERGIDVVRNQIKQFARTAPMGGAEFK-ILFLDEADALTNDAQAALRRT 126 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 ME++ RF L + + +P+Q R + R + E + Sbjct: 127 MENYAY----------------TCRFIL--SCNYSSKIIDPIQSRCAL-YRFRPLDREAV 167 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 + R AK GL++T++A I ++G R A Sbjct: 168 TEELNRIAKTEGLSITEDAMSAIIYVAQGDMRKA 201 >gi|213027867|ref|ZP_03342314.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 316 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|213581061|ref|ZP_03362887.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 430 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|171057447|ref|YP_001789796.1| recombination factor protein RarA [Leptothrix cholodnii SP-6] gi|170774892|gb|ACB33031.1| AAA ATPase central domain protein [Leptothrix cholodnii SP-6] Length = 447 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 15/145 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E GQ ++A L+V E+ + + ++ GPPG+GKTTLA+++A Sbjct: 31 LRPRTLDEVIGQYDLLDAGKPLRVAFESRQPHS-----MILWGPPGVGKTTLARLMADAF 85 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED-- 131 F S + I +A + A + R ++F+DE+HR + ++ P +E Sbjct: 86 DAQFVQISAVLGGVKEIREAVEQARVAQAQGRRCIVFVDEVHRFNKSQQDAFLPHVESGL 145 Query: 132 FQLDLMVGEGPSARSVKINLSRFTL 156 F E PS LSR T+ Sbjct: 146 FTFIGATTENPSFEVNSALLSRATV 170 >gi|78047616|ref|YP_363791.1| recombination factor protein RarA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036046|emb|CAJ23737.1| putative ATPase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 457 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTLEE GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 29 MRPRTLEEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F++ S P + + AA R VLF+DE+HR + ++ P +E Sbjct: 84 DAEFKAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 143 Query: 134 LDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 144 I-LFVGATTENPSFELN 159 >gi|117924970|ref|YP_865587.1| recombination factor protein RarA [Magnetococcus sp. MC-1] gi|117608726|gb|ABK44181.1| Recombination protein MgsA [Magnetococcus sp. MC-1] Length = 447 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 113/263 (42%), Gaps = 42/263 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L E GQ E ++ EA + + ++ GPPG GKTT+A+++A ++ + Sbjct: 18 MRPRDLAELVGQEELADEGRILHEALCS--GHIPSMILWGPPGCGKTTIARMIATQVTLR 75 Query: 82 FRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S S V+A ++ ++ L +LF+DEIHR + ++ P +E + Sbjct: 76 FESLSA-VLAGVKEVRLVVDRAREARVLGQGTILFVDEIHRFNKAQQDAFLPYVESGDI- 133 Query: 136 LMVGEGPSARSVKIN---LSRFTLIA-----ATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 +++G S ++N LSR ++ V LL L D+ Sbjct: 134 ILIGATTENPSFELNGALLSRCRVVELKPLHEAALVTLLQRALVDQ-------------- 179 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE---VAHAKTITRE 244 +RG + LAV EA +A + G R A LL + A VA +T E Sbjct: 180 -----ERGLERYKLAVEPEALQHMAQLAAGDGRYALNLLETFVELAAKSGVARGSQLTLE 234 Query: 245 IADAALLRLA--IDKMGFDQLDL 265 +L R A DK G +L Sbjct: 235 RLKNSLQRRAALYDKAGDGHYNL 257 >gi|309378598|emb|CBX22776.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 436 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V + D+ + E +LF+DE+HR + ++ P +E+ Sbjct: 72 NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVENG 130 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153 >gi|298372246|ref|ZP_06982236.1| ATPase, AAA family [Bacteroidetes oral taxon 274 str. F0058] gi|298275150|gb|EFI16701.1| ATPase, AAA family [Bacteroidetes oral taxon 274 str. F0058] Length = 421 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L+ F GQ ++ L+ IE+ + + GPPG+GKTTLA+++A L Sbjct: 8 LRPQSLDTFVGQRHLLADGAVLRSMIESGN-----ISSFILWGPPGVGKTTLAKIIANRL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + +LFIDEIHR S ++ L A+E Sbjct: 63 QRPFYTLSA-VTSGVKDVREVIEKAKQNRFFNSAPPILFIDEIHRFSKSQQDSLLGAVET 121 Query: 132 --FQLDLMVGEGPSARSVKINLSR 153 F L E PS + LSR Sbjct: 122 GIFTLIGATTENPSFEVITPLLSR 145 >gi|255065859|ref|ZP_05317714.1| replication-associated recombination protein A [Neisseria sicca ATCC 29256] gi|255049770|gb|EET45234.1| replication-associated recombination protein A [Neisseria sicca ATCC 29256] Length = 437 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 16/151 (10%) Query: 14 QEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 Q DA ++ LRP TL++ GQ + L+V +E K + +L GPPG+GKTT Sbjct: 8 QPDAPLAERLRPHTLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTT 62 Query: 70 LAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LA+++A+ F S I +A D A + +LF+DE+HR + ++ Sbjct: 63 LARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122 Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSR 153 P +E L + E PS LSR Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSR 153 >gi|261364752|ref|ZP_05977635.1| replication-associated recombination protein A [Neisseria mucosa ATCC 25996] gi|288567056|gb|EFC88616.1| replication-associated recombination protein A [Neisseria mucosa ATCC 25996] Length = 437 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 16/151 (10%) Query: 14 QEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 Q DA ++ LRP TL++ GQ + L+V +E K + +L GPPG+GKTT Sbjct: 8 QPDAPLAERLRPHTLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTT 62 Query: 70 LAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LA+++A+ F S I +A D A + +LF+DE+HR + ++ Sbjct: 63 LARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122 Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSR 153 P +E L + E PS LSR Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSR 153 >gi|206576595|ref|YP_002239455.1| putative DNA recombination-associated ATPase RarA [Klebsiella pneumoniae 342] gi|288936305|ref|YP_003440364.1| ATPase AAA [Klebsiella variicola At-22] gi|206565653|gb|ACI07429.1| putative DNA recombination-associated ATPase RarA [Klebsiella pneumoniae 342] gi|288891014|gb|ADC59332.1| AAA ATPase central domain protein [Klebsiella variicola At-22] Length = 447 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + K A +A L ++ GPPG GKTTLA+V+AR + Sbjct: 20 MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYASAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A N R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|21108233|gb|AAM36872.1| ATPase [Xanthomonas axonopodis pv. citri str. 306] Length = 429 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 1 MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 55 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F++ S V++ D+ +L R VLF+DE+HR + ++ P +E Sbjct: 56 DAEFKAISA-VLSGLPDVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERG 114 Query: 133 QLDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 115 TI-LFVGATTENPSFELN 131 >gi|283138944|gb|ADB12547.1| ATPase [uncultured bacterium 9F08] Length = 449 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 95/237 (40%), Gaps = 37/237 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT EF GQ K +A + L ++F GPPG GKTTLA+++A Sbjct: 23 MRPRTPAEFFGQQHLLGEGKPLRQAIDS--GNLHSMIFWGPPGTGKTTLARMIAGHGEAQ 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + S + AA+ + R VLF+DE+HR + ++ P +ED Sbjct: 81 FITISAVLSGVKEIRAAVEQARQARQRGQATVLFVDEVHRFNKSQQDAFLPHIED----- 135 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTIVQ- 193 FT I ATT L N L R + + L + +++TI+Q Sbjct: 136 ---------------GTFTFIGATTENPSFELNNALLSRARVYV-LKSLDSAEIETILQQ 179 Query: 194 ------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 RG L + D IA + G R A LL D AE I E Sbjct: 180 ALTDPERGLGRRPLVLADTLRRRIAEAADGDARRALNLLEIAADLAEPGEGVEIIAE 236 >gi|285018238|ref|YP_003375949.1| ATPase [Xanthomonas albilineans GPE PC73] gi|283473456|emb|CBA15961.1| putative atpase protein [Xanthomonas albilineans] Length = 457 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TLEE GQ + S L+ + A + + ++ GPPG GKTTLA ++A+ Sbjct: 29 MRPQTLEEMVGQKRLLTPSSALRRAVTAGRVHS-----MILWGPPGCGKTTLALLLAQYA 83 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F++ S V++ D+ +L R VLF+DE+HR + ++ P +E Sbjct: 84 DAEFKAISA-VLSGLPDVRLVLAEAAQRFADGRRTVLFVDEVHRFNKAQQDAFLPHIERG 142 Query: 133 QLDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 143 NI-LFVGATTENPSFELN 159 >gi|52081232|ref|YP_080023.1| recombination factor protein RarA [Bacillus licheniformis ATCC 14580] gi|52786612|ref|YP_092441.1| recombination factor protein RarA [Bacillus licheniformis ATCC 14580] gi|52004443|gb|AAU24385.1| Replication factor C conserved domain [Bacillus licheniformis ATCC 14580] gi|52349114|gb|AAU41748.1| YrvN [Bacillus licheniformis ATCC 14580] Length = 421 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 6/120 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +EE GQ K+ +A+ L ++ GPPG+GKT++A +A + Sbjct: 8 MRPTKIEEVLGQDHLVGEGKIIHRMVQAKH--LSSMILYGPPGIGKTSIATAIAGSTSIA 65 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + VI D+ A+ + + +L +DE+HRL ++ L P +E+ + +M+G Sbjct: 66 FRKLNA-VINNKKDMEAIAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMI-IMIG 123 >gi|238893953|ref|YP_002918687.1| recombination factor protein RarA [Klebsiella pneumoniae NTUH-K2044] gi|238546269|dbj|BAH62620.1| putative polynucleotide enzyme [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 447 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + K A +A L ++ GPPG GKTTLA+V+AR + Sbjct: 20 MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYASAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A N R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|319644801|ref|ZP_07999034.1| YrvN protein [Bacillus sp. BT1B_CT2] gi|317392610|gb|EFV73404.1| YrvN protein [Bacillus sp. BT1B_CT2] Length = 421 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 6/120 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +EE GQ K+ +A+ L ++ GPPG+GKT++A +A + Sbjct: 8 MRPTKIEEVLGQDHLVGEGKIIHRMVQAKH--LSSMILYGPPGIGKTSIATAIAGSTSIA 65 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + VI D+ A+ + + +L +DE+HRL ++ L P +E+ + +M+G Sbjct: 66 FRKLNA-VINNKKDMEAIAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMI-IMIG 123 >gi|296117814|ref|ZP_06836397.1| replication-associated recombination protein A [Corynebacterium ammoniagenes DSM 20306] gi|295969045|gb|EFG82287.1| replication-associated recombination protein A [Corynebacterium ammoniagenes DSM 20306] Length = 448 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ + K + EA V+ GPPG GKTT+A ++A +G N Sbjct: 1 MRPQQLDEVLGQDHLLAPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIASAMGQN 58 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + + ++T+ R VLFIDE+HR S ++ L A+E+ + Sbjct: 59 FVGLSA-LDSGVKQVREVITHARQEAIRGVRTVLFIDEVHRFSKTQQDALLAAVENRTVL 117 Query: 136 LMVG--EGPS 143 L+ E PS Sbjct: 118 LVAATTENPS 127 >gi|295675840|ref|YP_003604364.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002] gi|295435683|gb|ADG14853.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002] Length = 437 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 130/294 (44%), Gaps = 54/294 (18%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR ++E GQ L+V E+ +A + ++ GPPG+GKTTLA+++A Sbjct: 15 LRPRNIDEVIGQSHLLGPNKPLRVAFESGEAHS-----MILWGPPGVGKTTLARLMADAF 69 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S + I +A + A + + ++F+DE+HR + ++ P +E Sbjct: 70 DAQFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 128 Query: 134 LDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 L + VG S ++N LSR AA + LT+ Q + Sbjct: 129 LFVFVGATTENPSFEVNSALLSR----AAVYVLKSLTDDEQ-----------------RE 167 Query: 191 IVQRGAK-LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 +++R K L GL TDEA + + G R +LL + A A A+ T EI D A Sbjct: 168 LLERAQKELGGLTFTDEARTALIGSADGDGR---KLLNNLEIVARAA-AQQKTTEI-DGA 222 Query: 250 LLRLAI-------DKMG---FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293 LL A+ DK G +DQ+ + ++ N G + G ++PR Sbjct: 223 LLGSALAENLRRFDKGGDAFYDQISALHKSVRGSNPDGALYWFCRMLDGGADPR 276 >gi|160900791|ref|YP_001566373.1| recombination factor protein RarA [Delftia acidovorans SPH-1] gi|160366375|gb|ABX37988.1| AAA ATPase central domain protein [Delftia acidovorans SPH-1] Length = 434 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E GQ L++ ++ K + ++F GPPG+GKTTLA++ A Sbjct: 17 LRPKTLDEVVGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTATAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V + D+ A + + +LF+DEIHR + ++ L P E Sbjct: 72 KCEFIALSA-VFSGVKDIRAAMEQAQQNLAMGRHTILFVDEIHRFNKSQQDALLPYAE 128 >gi|288800898|ref|ZP_06406355.1| ATPase, AAA family [Prevotella sp. oral taxon 299 str. F0039] gi|288332359|gb|EFC70840.1| ATPase, AAA family [Prevotella sp. oral taxon 299 str. F0039] Length = 425 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 21/146 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +LEE+ GQ + + L+ I++ + + GPPG+GKTTLA +++ + Sbjct: 9 LRPNSLEEYVGQQHIIGKGAPLRRIIDSK----HGVPSFILWGPPGVGKTTLATIISHTI 64 Query: 79 GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 V F + TSG VI KA N +LFIDEIHR S ++ L A+ Sbjct: 65 DVPFYTLSAVTSGVKEVREVIDKATKERFFSNNAP---ILFIDEIHRFSKSQQDSLLGAV 121 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153 E + L+ E PS ++ LSR Sbjct: 122 EKGVVTLIGATTENPSFEVIRPLLSR 147 >gi|296109834|ref|YP_003616783.1| Replication factor C [Methanocaldococcus infernus ME] gi|295434648|gb|ADG13819.1| Replication factor C [Methanocaldococcus infernus ME] Length = 749 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 25/110 (22%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+TL+E GQ E LK ++ + +++ H+LF GPPG+GKTT A +AR+L G N Sbjct: 10 RPKTLDEIVGQEEIVKRLKNYV-----KRKSMPHLLFSGPPGVGKTTAALCLARDLFGEN 64 Query: 82 FR----------STSGPVIAKAG---------DLAALLTNLEDRDVLFID 112 +R S P++ K +L L N D D+ + D Sbjct: 65 WRENFLELNASVSKDTPILVKINGEVKRTTFAELDKLYFNERDGDISYKD 114 >gi|126736633|ref|ZP_01752373.1| ATPase, AAA family protein [Roseobacter sp. CCS2] gi|126713946|gb|EBA10817.1| ATPase, AAA family protein [Roseobacter sp. CCS2] Length = 436 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 26/187 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L E GQ + + +L ++F GPPG+GKTT+A+++A E ++ Sbjct: 23 LRPKALSEVIGQQQVLGADAPL--GTMLSSGSLSSLIFWGPPGVGKTTIARLLADETDLH 80 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F S P + K + A + +LF+DEIHR + ++ P MED + L Sbjct: 81 FVQISAIFTGVPDLRKVFEAAKMRRQNGKGTLLFVDEIHRFNKAQQDGFLPYMEDGTI-L 139 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196 +VG S ++N + + + ++V +LT RL+ ++DL+ + QR Sbjct: 140 LVGATTENPSFELNAA----VLSRSQVFILT-----------RLD---LKDLELLAQRAE 181 Query: 197 KLTGLAV 203 K G A+ Sbjct: 182 KELGKAL 188 >gi|37525550|ref|NP_928894.1| recombination factor protein RarA [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784978|emb|CAE13896.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 447 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLE++ GQ + K A RA L ++ GPPG GKTTLA+++ + Sbjct: 20 MRPMTLEQYIGQRHLLAEGKPLPRAI--RAGQLHSMILWGPPGTGKTTLAEIIGHYAQAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I ++ + A N R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGIKEIRESIEKARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|296120806|ref|YP_003628584.1| ATPase AAA [Planctomyces limnophilus DSM 3776] gi|296013146|gb|ADG66385.1| AAA ATPase central domain protein [Planctomyces limnophilus DSM 3776] Length = 432 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 75/267 (28%), Positives = 115/267 (43%), Gaps = 53/267 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPR L EF GQ V E R A+ + V+F GPPG+GKTTLA+++A+ Sbjct: 22 MRPRNLNEFIGQSH------VLGEGTLLRRMLIADRIHSVVFYGPPGVGKTTLAELIAKS 75 Query: 78 -----LGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 + +N +T + +A D + L + + +LF+DE+H + + +L P +E Sbjct: 76 SKRRFIALNAAATGVKELREALDESRERLKSSGTKTLLFVDELHHFNKQQQNVLLPDVEQ 135 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLK 189 +L+AATT L PL R I L E++K Sbjct: 136 --------------------GVVSLVAATTANPFFALIAPLLSRSQI-FELKPLSTEEIK 174 Query: 190 TIVQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240 +++ RG L V +E +A S G R R L + E ++ Sbjct: 175 AVLRQALSDETRGYGQKNLKVPEEVFDFLAASSDGDAR---RALLALEIAVESLDSRVLE 231 Query: 241 ITREIADAALLRLAI--DKMGFDQLDL 265 +T EIA +L + AI DK G D D+ Sbjct: 232 LTLEIAQESLQKKAIRYDKSGDDHYDV 258 >gi|294954392|ref|XP_002788145.1| werner helicase interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239903360|gb|EER19941.1| werner helicase interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 622 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%) Query: 43 FIEAAKARAEALDH------VLFVGPPGLGKTTLAQVVAREL---GVNFRSTS-GPVIAK 92 + EA A + H ++F GPPG GKTTLAQ++ R L G+ +R T V A Sbjct: 152 YYEALSQSAATISHHPTVPSMIFWGPPGCGKTTLAQLLCRSLTQSGLPWRHTKLSAVNAG 211 Query: 93 AGDLAALLTNLEDRD--------VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGP 142 D+ + E + +LF+DEIHR + ++ L P +E L L+ E P Sbjct: 212 VNDVGLEIPKAESMEGKVTISGTLLFLDEIHRFNKAQQDALLPHVESGTLTLIGATTENP 271 Query: 143 SARSVKINLSRFTLI 157 S + + +SR +I Sbjct: 272 SFQCNRALVSRCQVI 286 >gi|332638473|ref|ZP_08417336.1| recombination factor protein RarA [Weissella cibaria KACC 11862] Length = 428 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+EE GQ K+ A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRTIEEVVGQQHLVGEGKIIHRMVTAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + +K + A + VL +DEIHRL ++ L P +E Sbjct: 67 FRILNAATDSKKDLQIVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPHLE 116 >gi|255039465|ref|YP_003090086.1| AAA ATPase central domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254952221|gb|ACT96921.1| AAA ATPase central domain protein [Dyadobacter fermentans DSM 18053] Length = 423 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 7/126 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL++F GQ E K + A + A+ ++F GPPG+GKTTLA ++A Sbjct: 12 LRPRTLDDFVGQ-EKLLGPKGPLRRAILQ-NAIPSMIFWGPPGVGKTTLALLIAETTKRQ 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137 F + S + + DL +L +LFIDEIHR + ++ L A+E Q+ L+ Sbjct: 70 FYNLSA-ISSGVKDLREVLARPSGLFPAILFIDEIHRYNKSQQDALLGAVEKGQVTLIGA 128 Query: 138 VGEGPS 143 E PS Sbjct: 129 TTENPS 134 >gi|85706692|ref|ZP_01037784.1| ATPase, AAA family protein [Roseovarius sp. 217] gi|85668750|gb|EAQ23619.1| ATPase, AAA family protein [Roseovarius sp. 217] Length = 435 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 19/151 (12%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L + GQ + + L V + + +L ++F GPPG+GKTT+A+++A E Sbjct: 24 LRPRRLTDVIGQDQVLGPEAPLGVMLASG-----SLSSLVFWGPPGVGKTTIARLLADET 78 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 ++F S + +L + + R +LF+DEIHR + ++ P MED Sbjct: 79 DLHFIQISA-IFTGVPELRKVFEEAKHRRTQGRGTLLFVDEIHRFNKAQQDGFLPHMEDG 137 Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLIAAT 160 + L+VG S ++N LSR ++ T Sbjct: 138 TI-LLVGATTENPSFELNAALLSRAQVLVLT 167 >gi|291281895|ref|YP_003498713.1| Replication-associated recombination protein A [Escherichia coli O55:H7 str. CB9615] gi|290761768|gb|ADD55729.1| Replication-associated recombination protein A [Escherichia coli O55:H7 str. CB9615] Length = 447 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + K A +A L ++ GPPG GKTTLA+V+AR + Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEA--GYLHSMILWGPPGTGKTTLAEVIARYANAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A N R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|213418910|ref|ZP_03351976.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 235 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|212709768|ref|ZP_03317896.1| hypothetical protein PROVALCAL_00816 [Providencia alcalifaciens DSM 30120] gi|212687579|gb|EEB47107.1| hypothetical protein PROVALCAL_00816 [Providencia alcalifaciens DSM 30120] Length = 447 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 11/147 (7%) Query: 6 GLLSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 G LS + SQ + + +RP TLE++ GQ + K A RA L ++ GPP Sbjct: 2 GNLSLDFSQNEFQPLAARMRPETLEQYIGQKHLLAEGKPLPRAI--RAGHLHSMILWGPP 59 Query: 64 GLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 G GKTTLA+V+ + TSG I ++ + A + R +LF+DE+HR + Sbjct: 60 GTGKTTLAEVIGHYAQADIERISAVTSGIKEIRESIEKARQNLSAGRRTILFVDEVHRFN 119 Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPS 143 ++ P +ED + + E PS Sbjct: 120 KSQQDAFLPHIEDGTITFIGATTENPS 146 >gi|156382458|ref|XP_001632570.1| predicted protein [Nematostella vectensis] gi|156219628|gb|EDO40507.1| predicted protein [Nematostella vectensis] Length = 432 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 34/158 (21%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +LE++ GQ + N L+ +EA + + ++ GPPG GKTTLA +VA Sbjct: 1 MRPTSLEDYVGQEQVLGNSCLLRTLLEANEVPS-----MVLWGPPGCGKTTLAHIVAN-- 53 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-----------------RDVLFIDEIHRLSIIV 121 N R T+ + L+A + + D + +LF+DEIHR + Sbjct: 54 --NARKTT---TTRFVTLSATTSGINDIKEVVKVAKNEQQMFRRKTILFVDEIHRFNKTQ 108 Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 ++ P +E+ + L+ E PS + LSR +I Sbjct: 109 QDTFLPHVENGTITLIGATTENPSFQLNTALLSRCRVI 146 >gi|118086469|ref|XP_418979.2| PREDICTED: similar to Werner helicase interacting protein 1 isoform 2 [Gallus gallus] Length = 562 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 LRP TL ++ GQ + A + L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 127 LRPDTLRDYVGQERVLGAHTLLRSLLESHE-----IPSLILWGPPGCGKTTLAHIIANSS 181 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ G+ F + S AK D+ +++ ++ + +LFIDEIHR + ++ P Sbjct: 182 KKKGMRFVTLSA-TSAKTNDVRDVISQAQNEKRLFKRKTILFIDEIHRFNKSQQDTFLPH 240 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 241 VECGTVTLIGATTENPSFQVNAALLSRCRVI 271 >gi|229013617|ref|ZP_04170748.1| hypothetical protein bmyco0001_40250 [Bacillus mycoides DSM 2048] gi|228747676|gb|EEL97548.1| hypothetical protein bmyco0001_40250 [Bacillus mycoides DSM 2048] Length = 428 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 86/330 (26%), Positives = 130/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTL 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VTDEA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|209695310|ref|YP_002263239.1| recombination factor protein RarA [Aliivibrio salmonicida LFI1238] gi|208009262|emb|CAQ79528.1| conserevd hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 448 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 45/234 (19%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+ +E++ GQ + L+ +EA + + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQNIEQYIGQQHLLAVGKPLRRALEAGQ-----IHSMILWGPPGTGKTTLAEVAANYA 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 S V + D+ A + ++ R +LF+DE+HR + ++ P +E+ Sbjct: 76 NAEVERVSA-VTSGVKDIRAAIDKAKENQTTGRRTILFVDEVHRFNKSQQDAFLPHIEN- 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKT 190 T I ATT L N L R + +L E +D+ Sbjct: 134 -------------------GTITFIGATTENPSFELNNALLSRARV-YKLKSLEKQDIVQ 173 Query: 191 IVQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 I++ RG + D+ ++A G R++ L + D AE H Sbjct: 174 IIEQALTDKNRGLNDDNFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAEENH 227 >gi|190574295|ref|YP_001972140.1| recombination factor protein RarA [Stenotrophomonas maltophilia K279a] gi|190012217|emb|CAQ45840.1| putative ATPase [Stenotrophomonas maltophilia K279a] Length = 453 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 29 MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAEYA 83 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ S P + + AA R VLF+DE+HR + ++ P +E Sbjct: 84 DAEFRAISAVLSGLPEVRQVLAEAAQRFAEGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 143 Query: 134 LDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 144 I-LFVGATTENPSFELN 159 >gi|160871530|ref|ZP_02061662.1| DNA-dependant ATPase [Rickettsiella grylli] gi|159120329|gb|EDP45667.1| DNA-dependant ATPase [Rickettsiella grylli] Length = 434 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 14/152 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L++F GQ K A L ++ GPPG GKTTLAQ++A + Sbjct: 15 LRPQHLDQFFGQAHLLGPQKPLRRAL--LNNQLHSMILWGPPGTGKTTLAQLMAHHIQAK 72 Query: 82 FRSTSG-----PVIAKAGD--LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S S I + D + + T+ + + F+DEIHR + ++ L P +E L Sbjct: 73 FESLSALQSGVKEIRQLADRIKSQMNTHQPQKTICFVDEIHRFNKSQQDSLLPFVES-GL 131 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 +++G S +IN + + TRV +L Sbjct: 132 FILIGATTENPSFEIN----NALLSRTRVYVL 159 >gi|266624899|ref|ZP_06117834.1| replication-associated recombination protein A [Clostridium hathewayi DSM 13479] gi|288863218|gb|EFC95516.1| replication-associated recombination protein A [Clostridium hathewayi DSM 13479] Length = 440 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 18/171 (10%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S LRP LEEF GQ KV + + ++F GPPG+GKTTLA+++A Sbjct: 18 SRLRPTGLEEFVGQKHLLGEGKVLRRIIDQ--DMVCSMIFWGPPGVGKTTLARIIANRTK 75 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +F S V + ++ ++ E R ++F+DEIHR + ++ P +E Sbjct: 76 ASFVDFSA-VTSGIKEIKEVMAQAERDRHMGLRTLVFVDEIHRFNKAQQDAFLPYVEKGS 134 Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176 + +++G S +IN LSR F L A T V LL + L G+ Sbjct: 135 I-ILIGATTENPSFEINAALLSRCKVFVLQALQTDDLVILLHHALTSPLGL 184 >gi|303257968|ref|ZP_07343977.1| magnesium chelatase, subunit ChlI family [Burkholderiales bacterium 1_1_47] gi|302859311|gb|EFL82393.1| magnesium chelatase, subunit ChlI family [Burkholderiales bacterium 1_1_47] Length = 484 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 12/144 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+T++E GQ K + +A A +L+ GPPG+GKTTLA+++A G+ Sbjct: 42 LRPKTIDEVVGQKHLLGPGKP-LRSAFENAHPHSMILW-GPPGVGKTTLARLMADAFGLP 99 Query: 82 FRSTSGPVIAKAGDL-AALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED--F 132 F S S V+ D+ A+ +R+ V+F+DE+HR S ++ P +E F Sbjct: 100 FISISA-VLGGVKDIRDAVEKATANREKTGRSTVVFVDEVHRFSKSQQDAFLPHVESGLF 158 Query: 133 QLDLMVGEGPSARSVKINLSRFTL 156 E PS + LSR T+ Sbjct: 159 TFIGATTENPSFEVISALLSRSTV 182 >gi|170747937|ref|YP_001754197.1| recombination factor protein RarA [Methylobacterium radiotolerans JCM 2831] gi|170654459|gb|ACB23514.1| AAA ATPase central domain protein [Methylobacterium radiotolerans JCM 2831] Length = 447 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL E GQ + R L ++F GPPG GKTT+A+++A+ ++ Sbjct: 32 LRPQTLAEVVGQEHLTGEGGALTRLLRGRT--LGSLIFWGPPGTGKTTVARLLAQGTDLH 89 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + + P MED + Sbjct: 90 FEQISA-IFSGVPDLRKVFEAARKRRATGQGTLLFVDEIHRFNRAQLDAFLPVMEDGTVT 148 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 149 LVGATTENPS 158 >gi|149918222|ref|ZP_01906714.1| AAA ATPase [Plesiocystis pacifica SIR-1] gi|149820982|gb|EDM80389.1| AAA ATPase [Plesiocystis pacifica SIR-1] Length = 513 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+ + GQ ++ ++ + + ++F GPPG GKTTLA+++A G + Sbjct: 26 MRPRDLDGYVGQEHLTGPGRLLRRVVES--DRIPSMIFWGPPGTGKTTLARIIASRTGAH 83 Query: 82 FRSTSGPVIAKAGDL-AALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAME 130 F + S A DL A+ E RD +LF+DEIHR + ++ L P +E Sbjct: 84 FDTLSA-TDAGVKDLRKAVERARERRDYQGRATLLFVDEIHRFNKAQQDALLPHVE 138 >gi|331000051|ref|ZP_08323746.1| recombination factor protein RarA [Parasutterella excrementihominis YIT 11859] gi|329572935|gb|EGG54555.1| recombination factor protein RarA [Parasutterella excrementihominis YIT 11859] Length = 484 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 12/144 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+T++E GQ K + +A A +L+ GPPG+GKTTLA+++A G+ Sbjct: 42 LRPKTIDEVVGQKHLLGPGKP-LRSAFENAHPHSMILW-GPPGVGKTTLARLMADAFGLP 99 Query: 82 FRSTSGPVIAKAGDL-AALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED--F 132 F S S V+ D+ A+ +R+ V+F+DE+HR S ++ P +E F Sbjct: 100 FISISA-VLGGVKDIRDAVEKATANREKTGRSTVVFVDEVHRFSKSQQDAFLPHVESGLF 158 Query: 133 QLDLMVGEGPSARSVKINLSRFTL 156 E PS + LSR T+ Sbjct: 159 TFIGATTENPSFEVISALLSRSTV 182 >gi|289811623|ref|ZP_06542252.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 144 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 13/118 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|15827173|ref|NP_301436.1| recombination factor protein RarA [Mycobacterium leprae TN] gi|221229651|ref|YP_002503067.1| recombination factor protein RarA [Mycobacterium leprae Br4923] gi|13092721|emb|CAC30018.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932758|emb|CAR70603.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 473 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 38/184 (20%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + S L+ +E + + L GPPG GKTTLA ++++ Sbjct: 57 MRPASLDELVGQGHLLAPGSPLRRLVEGSGVVSAILH-----GPPGCGKTTLAALISQAT 111 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A D+ A+L R VLFIDE+HR S ++ L A+E+ Sbjct: 112 GHRFEALSA-LSAGVKDVRAVLKIARSALLSGKRTVLFIDEVHRFSKTQQDALLSAVENR 170 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + L+ E PS F+++A PL R I ++L +D++ Sbjct: 171 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLNADDIRA 209 Query: 191 IVQR 194 +VQR Sbjct: 210 VVQR 213 >gi|253990317|ref|YP_003041673.1| recombination factor protein RarA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781767|emb|CAQ84930.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 447 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLE++ GQ + K A RA L ++ GPPG GKTTLA+++ + Sbjct: 20 MRPITLEQYIGQQHLLAEGKPLPRAI--RAGQLHSMILWGPPGTGKTTLAEIIGHYAQAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I ++ + A N R +LF+DE+HR + ++ P +ED + Sbjct: 78 IERISAVTSGIKEIRESIEKARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|134295004|ref|YP_001118739.1| recombination factor protein RarA [Burkholderia vietnamiensis G4] gi|134138161|gb|ABO53904.1| Recombination protein MgsA [Burkholderia vietnamiensis G4] Length = 436 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 42/259 (16%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + +D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIREAMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + L D ++++ + Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKS-LDD-------------DEMRQL 171 Query: 192 VQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 ++R + L GLA D+A + + G R LL + + A A TI + +A Sbjct: 172 LERAQQIALDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAASSARVTTIDADFVSSA 231 Query: 250 LLRLA--IDKMG---FDQL 263 + A DK G +DQ+ Sbjct: 232 MTLNARRFDKGGDNFYDQI 250 >gi|126322071|ref|XP_001368425.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform 1 [Monodelphis domestica] Length = 695 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 44/219 (20%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFV 60 RE + + V + AD +RP TL+E+ GQ + L+ +E+ + + ++ Sbjct: 240 REEIWQKLVGKPLADK--MRPATLQEYIGQNKVVGQETLLRSLLESNE-----IPSLILW 292 Query: 61 GPPGLGKTTLAQVVARELGVN---FRSTSGPVIAKAGDLAALLTNLED-------RDVLF 110 GPPG GKTTLA ++A N F + S AK D+ ++ ++ + +LF Sbjct: 293 GPPGCGKTTLAYIIANNSKKNSMRFVTLSA-TSAKTSDVRDVIKQAQNEKNFFKRKTILF 351 Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 IDEIHR + ++ P +E + L+ E PS + LSR +I Sbjct: 352 IDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIV---------- 401 Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207 L E +KTI+ R GL V D+ Sbjct: 402 -----------LEKLSAEAMKTILMRAVSSLGLRVLDQG 429 >gi|262370792|ref|ZP_06064116.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262314154|gb|EEY95197.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 425 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 39/204 (19%) Query: 16 DADISL---LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 D++I L LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT Sbjct: 3 DSNIPLPERLRPRDLSEIIGQDHLLGEQAPLRQMIDQGH-----LPSIIFWGPPGVGKTT 57 Query: 70 LAQVVARELGVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 +A ++A+ + F S S +IA GDL V+FIDEIHR + Sbjct: 58 IALLLAQAIDRPFVSLSALNTGVKELREIIADGGDLMP--------PVVFIDEIHRFNKS 109 Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAA---TTRVGLLTNPLQD 172 ++ L A+E ++ L+ E PS LSR +TL A + LL D Sbjct: 110 QQDALLNAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNALDADAIQTLLLQAIKND 169 Query: 173 RFGIPIRLNFYEIEDLKTIVQRGA 196 F ++ + +IE+ + +VQ A Sbjct: 170 PF---LKERYIQIEEFEALVQFAA 190 >gi|170756647|ref|YP_001782185.1| recombination factor protein RarA [Clostridium botulinum B1 str. Okra] gi|169121859|gb|ACA45695.1| ATPase, AAA family [Clostridium botulinum B1 str. Okra] Length = 416 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 26/257 (10%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ LE+F GQ S K K ++ + + +F GPPG GKTTLA ++A + Sbjct: 7 LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64 Query: 81 NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + I ++ + + +L + VL+IDE+ + ++ L +ED ++ L Sbjct: 65 KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124 Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186 + E P K LSR + R ++ N L D+ GI I+ +F +E Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYSFESLE 183 Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237 + I Q + + LAV I + +A +R E A Sbjct: 184 YIGEICQGDYRKAYNILELAVNSHCGFNIEITLDYIESLAQSNIRADATGDEYYNILSAF 243 Query: 238 AKTITREIADAALLRLA 254 K+I ADAA+ LA Sbjct: 244 QKSIRGSDADAAVHYLA 260 >gi|262038640|ref|ZP_06012008.1| replication-associated recombination protein A [Leptotrichia goodfellowii F0264] gi|261747346|gb|EEY34817.1| replication-associated recombination protein A [Leptotrichia goodfellowii F0264] Length = 408 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 14/118 (11%) Query: 23 RPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RPRTLE+F GQ + L+ IE + +F G PG GKTTLA+++A + Sbjct: 19 RPRTLEDFYGQEKIVGEKGVLRKIIEKG-----TFMNSIFWGSPGTGKTTLAEIIANRMN 73 Query: 80 VNFR-----STSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 N+ +S I + + A + +E R +LF DEIHR + + ++ L +E+ Sbjct: 74 YNYEYLNAIKSSVSDIKELSERAKRIFGIEGRQTLLFFDEIHRFNKLQQDSLLQDLEN 131 >gi|261209220|ref|ZP_05923612.1| AAA ATPase [Enterococcus faecium TC 6] gi|289566136|ref|ZP_06446571.1| AAA domain-containing protein yrvN [Enterococcus faecium D344SRF] gi|294614190|ref|ZP_06694110.1| ATPase, AAA family [Enterococcus faecium E1636] gi|260076766|gb|EEW64501.1| AAA ATPase [Enterococcus faecium TC 6] gi|289162081|gb|EFD09946.1| AAA domain-containing protein yrvN [Enterococcus faecium D344SRF] gi|291592966|gb|EFF24555.1| ATPase, AAA family [Enterococcus faecium E1636] Length = 428 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E GQ K+ AR L ++ GPPG GKT++A +A Sbjct: 9 MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DE+HRL ++ L P +E ++ +++G Sbjct: 67 FRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|241889956|ref|ZP_04777254.1| replication-associated recombination protein A [Gemella haemolysans ATCC 10379] gi|241863578|gb|EER67962.1| replication-associated recombination protein A [Gemella haemolysans ATCC 10379] Length = 415 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 5/114 (4%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I+ LRP +++ GQ + KV + +++ + +L+ GPPG GKT++A +A EL Sbjct: 5 INKLRPSKIDDIIGQHHLIGDGKVLTKIVESK-KMFSFILY-GPPGTGKTSIANALANEL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAME 130 F+ + V DL A++ + + +L +DE HRL+ +++IL P +E Sbjct: 63 DYKFKILNA-VNCTKKDLTAVIEESKRFKKVILLLDEFHRLTKPMQDILLPEIE 115 >gi|314938563|ref|ZP_07845847.1| recombination factor protein RarA [Enterococcus faecium TX0133a04] gi|314940908|ref|ZP_07847814.1| recombination factor protein RarA [Enterococcus faecium TX0133C] gi|314948071|ref|ZP_07851473.1| recombination factor protein RarA [Enterococcus faecium TX0082] gi|314952045|ref|ZP_07855068.1| recombination factor protein RarA [Enterococcus faecium TX0133A] gi|314991926|ref|ZP_07857381.1| recombination factor protein RarA [Enterococcus faecium TX0133B] gi|314995184|ref|ZP_07860298.1| recombination factor protein RarA [Enterococcus faecium TX0133a01] gi|313590593|gb|EFR69438.1| recombination factor protein RarA [Enterococcus faecium TX0133a01] gi|313593510|gb|EFR72355.1| recombination factor protein RarA [Enterococcus faecium TX0133B] gi|313595835|gb|EFR74680.1| recombination factor protein RarA [Enterococcus faecium TX0133A] gi|313600266|gb|EFR79109.1| recombination factor protein RarA [Enterococcus faecium TX0133C] gi|313642120|gb|EFS06700.1| recombination factor protein RarA [Enterococcus faecium TX0133a04] gi|313645487|gb|EFS10067.1| recombination factor protein RarA [Enterococcus faecium TX0082] Length = 459 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E GQ K+ AR L ++ GPPG GKT++A +A Sbjct: 40 MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 97 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DE+HRL ++ L P +E ++ +++G Sbjct: 98 FRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 156 Query: 141 GPSARSVKIN 150 + IN Sbjct: 157 TTENPYITIN 166 >gi|301632691|ref|XP_002945415.1| PREDICTED: replication-associated recombination protein A-like [Xenopus (Silurana) tropicalis] Length = 435 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 132/327 (40%), Gaps = 60/327 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL E GQ L++ E+ + + + GPPG+GKTT+A+++A Sbjct: 16 LRPRTLGEVIGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMAEAF 70 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPAME 130 F S S V+ D+ + E R ++F+DE+HR + ++ P +E Sbjct: 71 DAQFISISA-VLGGVKDIRDAVQLAERARDGLAPQRTIVFVDEVHRFNKSQQDAFLPHVE 129 Query: 131 D--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 F E PS LSR T+ + PL +DL Sbjct: 130 SGLFTFVGATTENPSFEVNSALLSRATVY--------VLQPL-------------AADDL 168 Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 K IV + L L A+ +EA + + G R RLL + + A + + D Sbjct: 169 KQIVAKAQALQALPAIENEALERLVAYADGDAR---RLLNTLETLSVTAGQAQLA-TLTD 224 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307 A LL++ ++M R GG +TISA R + D ++++ Sbjct: 225 AWLLQVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRM 271 Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332 PR R ++ +AW+ +G+ P Sbjct: 272 LDGGADPRYMARRIVRMAWEDVGLADP 298 >gi|322806907|emb|CBZ04477.1| ATPase, AAA family [Clostridium botulinum H04402 065] Length = 416 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 26/257 (10%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ LE+F GQ S K K ++ + + +F GPPG GKTTLA ++A + Sbjct: 7 LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64 Query: 81 NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + I ++ + + +L + VL+IDE+ + ++ L +ED ++ L Sbjct: 65 KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124 Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186 + E P K LSR + R ++ N L D+ GI I+ +F +E Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYSFESLE 183 Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237 + I Q + + LAV I + +A +R E A Sbjct: 184 YIGEICQGDYRKAYNILELAVNSHCGINIEITLDYIESLAQSNIRADATGDEYYNILSAF 243 Query: 238 AKTITREIADAALLRLA 254 K+I ADAA+ LA Sbjct: 244 QKSIRGSDADAAVHYLA 260 >gi|254420530|ref|ZP_05034254.1| ATPase, AAA family protein [Brevundimonas sp. BAL3] gi|196186707|gb|EDX81683.1| ATPase, AAA family protein [Brevundimonas sp. BAL3] Length = 442 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 13/117 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E GQ + ++ IEA + L ++ GPPG GKTT+A+++A+ Sbjct: 21 LRPRTLDEVVGQDHLLGPGGPIRRMIEAGR-----LGSMILWGPPGTGKTTIARLLAQAA 75 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 G ++S S + KA + A + +LF+DEIHR + ++ P +E Sbjct: 76 GYEYQSISAVFSGVADLKKAFEAARMRRAAGQSTLLFVDEIHRFNRAQQDGFLPFVE 132 >gi|296447422|ref|ZP_06889347.1| AAA ATPase central domain protein [Methylosinus trichosporium OB3b] gi|296255042|gb|EFH02144.1| AAA ATPase central domain protein [Methylosinus trichosporium OB3b] Length = 436 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L+E GQ V L I R+ ++ ++F GPPG GKTT+A+++A E Sbjct: 21 LRPRRLDEVAGQERLVGPDGALTRMI-----RSGSIGSLIFWGPPGTGKTTVARLLAHET 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 + F S + DL R +LF+DEIHR + ++ P MED Sbjct: 76 DLAFVQISA-IFTGVADLKKTFEAARARRAVGQGTLLFVDEIHRFNRAQQDSFLPVMEDG 134 Query: 133 QLDLM--VGEGPS 143 + L+ E PS Sbjct: 135 AVTLIGATTENPS 147 >gi|294011479|ref|YP_003544939.1| putative ATPase [Sphingobium japonicum UT26S] gi|292674809|dbj|BAI96327.1| putative ATPase [Sphingobium japonicum UT26S] Length = 436 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ E A R A L ++ GPPG GKTT+++++A + Sbjct: 23 LRPRALAEVVGQDHLTGP-----EGAIGRMVAAGRLSSIILWGPPGTGKTTISRLLADAV 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S V + DL + +D + +LF+DEIHR + ++ P +ED Sbjct: 78 GMRFEPISA-VFSGVADLKKVFAAAKDHARRGEKTLLFVDEIHRFNRAQQDGFLPFVEDG 136 Query: 133 QLDLM--VGEGPS 143 + L+ E PS Sbjct: 137 TVTLVGATTENPS 149 >gi|257899569|ref|ZP_05679222.1| AAA ATPase [Enterococcus faecium Com15] gi|257837481|gb|EEV62555.1| AAA ATPase [Enterococcus faecium Com15] Length = 428 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E GQ K+ AR L ++ GPPG GKT++A +A Sbjct: 9 MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DE+HRL ++ L P +E ++ +++G Sbjct: 67 FRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|269977315|ref|ZP_06184288.1| recombination factor protein RarA [Mobiluncus mulieris 28-1] gi|269934618|gb|EEZ91179.1| recombination factor protein RarA [Mobiluncus mulieris 28-1] Length = 445 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 6/116 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79 +RPR+L+E GQ + + + V+ GPPG GKTTLA +VA+ G Sbjct: 27 MRPRSLDELVGQEHLLAQNSPLRRLLSGQTDMASSVILFGPPGTGKTTLAFLVAQAGGRE 86 Query: 80 -VNFRSTSGPV--IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 V + S V + + D A NLE ++ +LF+DE+HR S ++ L A+E+ Sbjct: 87 YVQLSAISAGVKEVREVIDSAKRRLNLEGKETILFLDEVHRFSKSQQDSLLSAVEN 142 >gi|229062094|ref|ZP_04199419.1| hypothetical protein bcere0026_41660 [Bacillus cereus AH603] gi|228717246|gb|EEL68921.1| hypothetical protein bcere0026_41660 [Bacillus cereus AH603] Length = 428 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 86/330 (26%), Positives = 130/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTL 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VTDEA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|69247927|ref|ZP_00604543.1| AAA ATPase, central region [Enterococcus faecium DO] gi|257880292|ref|ZP_05659945.1| AAA ATPase [Enterococcus faecium 1,230,933] gi|257882146|ref|ZP_05661799.1| AAA ATPase [Enterococcus faecium 1,231,502] gi|257885338|ref|ZP_05664991.1| AAA ATPase [Enterococcus faecium 1,231,501] gi|257894205|ref|ZP_05673858.1| AAA ATPase [Enterococcus faecium 1,231,408] gi|258614762|ref|ZP_05712532.1| recombination factor protein RarA [Enterococcus faecium DO] gi|260562406|ref|ZP_05832920.1| AAA ATPase [Enterococcus faecium C68] gi|293556301|ref|ZP_06674886.1| ATPase, AAA family [Enterococcus faecium E1039] gi|293560717|ref|ZP_06677196.1| ATPase, AAA family [Enterococcus faecium E1162] gi|293566152|ref|ZP_06678555.1| ATPase, AAA family [Enterococcus faecium E1071] gi|294618776|ref|ZP_06698303.1| ATPase, AAA family [Enterococcus faecium E1679] gi|294622228|ref|ZP_06701288.1| ATPase, AAA family [Enterococcus faecium U0317] gi|68194629|gb|EAN09116.1| AAA ATPase, central region [Enterococcus faecium DO] gi|257814520|gb|EEV43278.1| AAA ATPase [Enterococcus faecium 1,230,933] gi|257817804|gb|EEV45132.1| AAA ATPase [Enterococcus faecium 1,231,502] gi|257821194|gb|EEV48324.1| AAA ATPase [Enterococcus faecium 1,231,501] gi|257830584|gb|EEV57191.1| AAA ATPase [Enterococcus faecium 1,231,408] gi|260073330|gb|EEW61671.1| AAA ATPase [Enterococcus faecium C68] gi|291590078|gb|EFF21870.1| ATPase, AAA family [Enterococcus faecium E1071] gi|291594964|gb|EFF26314.1| ATPase, AAA family [Enterococcus faecium E1679] gi|291598270|gb|EFF29363.1| ATPase, AAA family [Enterococcus faecium U0317] gi|291601560|gb|EFF31827.1| ATPase, AAA family [Enterococcus faecium E1039] gi|291605308|gb|EFF34763.1| ATPase, AAA family [Enterococcus faecium E1162] Length = 428 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E GQ K+ AR L ++ GPPG GKT++A +A Sbjct: 9 MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DE+HRL ++ L P +E ++ +++G Sbjct: 67 FRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|293571361|ref|ZP_06682392.1| ATPase, AAA family [Enterococcus faecium E980] gi|291608577|gb|EFF37868.1| ATPase, AAA family [Enterococcus faecium E980] Length = 427 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E GQ K+ AR L ++ GPPG GKT++A +A Sbjct: 9 MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DE+HRL ++ L P +E ++ +++G Sbjct: 67 FRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|325120694|emb|CBZ56249.1| putative ATPase, AAA family domain containing protein [Neospora caninum Liverpool] Length = 1056 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 87/206 (42%), Gaps = 46/206 (22%) Query: 22 LRPRTLEEFTGQVEACS----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LRP +L+EF GQ E+ +++ +EA + ++ GPPG GKTTLA + R Sbjct: 584 LRPTSLDEFVGQTESIQGGRGSVRELMEAGH-----IPSLILWGPPGCGKTTLALLAGRC 638 Query: 78 LGVNFRSTSGPVIAKAGDLAA--------------LLTNLEDRDVLFIDEIHRLSIIVEE 123 + PV K + L + + +LF+DEIHR + ++ Sbjct: 639 TNRKSPLSLPPVFKKMSAVTCGVNDVRKVVQEALTLRATTKQKTILFLDEIHRFNKAQQD 698 Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 L P +E + L+ E PS + LSR RV L PL + Sbjct: 699 ALLPHVESGTVTLIGATTENPSFEVNRALLSR-------CRVCKL-EPLTE--------- 741 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEA 207 ++L I+QR AK + VT+ A Sbjct: 742 ----DNLTVILQRAAKEENVTVTEAA 763 >gi|167570877|ref|ZP_02363751.1| recombination factor protein RarA [Burkholderia oklahomensis C6786] Length = 436 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 38/287 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIREAMDQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + +D E+ L Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLTED-----------ELRQLLAR 174 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 Q A L GLA D+A + + G R LL + + A A TI ++A+ Sbjct: 175 AQDTA-LAGLAFEDKAVDTLVGYADGDARRFLNLLEQAQTAATSAGVTTIDAAFVESAMT 233 Query: 252 RLA--IDKMG---FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293 A DK G +DQ+ + ++ N G + G ++P+ Sbjct: 234 MNARRFDKGGDNFYDQISALHKSVRGSNPDGALYWFCRMLDGGADPK 280 >gi|291515550|emb|CBK64760.1| Recombination protein MgsA [Alistipes shahii WAL 8301] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E+ GQ V + F E + + GPPG+GKTTLA++VA +L Sbjct: 10 LRPRTIDEYIGQEHLVGKNGVFRKFFETGN-----VPSFILWGPPGVGKTTLAKIVATQL 64 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + + +LFIDEIHR + ++ L A+E Sbjct: 65 ERPFFTLSA-VTSGVKDVREVIESARKQRFFDQKAPLLFIDEIHRFNKSQQDSLLGAVEQ 123 Query: 132 --FQLDLMVGEGPSARSVKINLSR 153 F L E PS + LSR Sbjct: 124 GVFTLIGATTENPSFEVISPLLSR 147 >gi|257890950|ref|ZP_05670603.1| recombination factor protein RarA [Enterococcus faecium 1,231,410] gi|257827310|gb|EEV53936.1| recombination factor protein RarA [Enterococcus faecium 1,231,410] Length = 342 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E GQ K+ AR L ++ GPPG GKT++A +A Sbjct: 9 MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DE+HRL ++ L P +E ++ +++G Sbjct: 67 FRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|160936225|ref|ZP_02083598.1| hypothetical protein CLOBOL_01121 [Clostridium bolteae ATCC BAA-613] gi|158441035|gb|EDP18759.1| hypothetical protein CLOBOL_01121 [Clostridium bolteae ATCC BAA-613] Length = 438 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 22/156 (14%) Query: 20 SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S LRP L+ F GQ L+ IE K + ++F GPPG+GKTTLA ++A+ Sbjct: 18 SRLRPDDLDGFVGQEHLLGKGKLLRQLIEQDK-----IPSMIFWGPPGVGKTTLAGIIAK 72 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V + ++ ++ E+ + +LF+DEIHR + ++ P +E Sbjct: 73 RTNAQFINFSA-VTSGIKEIKEVMVQAENSRRMGIKTLLFVDEIHRFNKAQQDAFLPYVE 131 Query: 131 DFQLDLMVGEGPSARSVKIN---LSR---FTLIAAT 160 + +++G S +IN LSR F L A T Sbjct: 132 KGSI-ILIGATTENPSFEINSALLSRCRVFVLQALT 166 >gi|227875433|ref|ZP_03993574.1| crossover junction endodeoxyribonuclease ATPase [Mobiluncus mulieris ATCC 35243] gi|306818744|ref|ZP_07452466.1| AAA family ATPase [Mobiluncus mulieris ATCC 35239] gi|307701030|ref|ZP_07638055.1| recombination factor protein RarA [Mobiluncus mulieris FB024-16] gi|227843987|gb|EEJ54155.1| crossover junction endodeoxyribonuclease ATPase [Mobiluncus mulieris ATCC 35243] gi|304648430|gb|EFM45733.1| AAA family ATPase [Mobiluncus mulieris ATCC 35239] gi|307614025|gb|EFN93269.1| recombination factor protein RarA [Mobiluncus mulieris FB024-16] Length = 445 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 6/116 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79 +RPR+L+E GQ + + + V+ GPPG GKTTLA +VA+ G Sbjct: 27 MRPRSLDELVGQEHLLAQNSPLRRLLSGQTDMASSVILFGPPGTGKTTLAFLVAQAGGRE 86 Query: 80 -VNFRSTSGPV--IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 V + S V + + D A NLE ++ +LF+DE+HR S ++ L A+E+ Sbjct: 87 YVQLSAISAGVKEVREVIDSAKRRLNLEGKETILFLDEVHRFSKSQQDSLLSAVEN 142 >gi|312862465|ref|ZP_07722708.1| ATPase, AAA family [Streptococcus vestibularis F0396] gi|322515850|ref|ZP_08068794.1| crossover junction endodeoxyribonuclease [Streptococcus vestibularis ATCC 49124] gi|311102108|gb|EFQ60308.1| ATPase, AAA family [Streptococcus vestibularis F0396] gi|322125736|gb|EFX97058.1| crossover junction endodeoxyribonuclease [Streptococcus vestibularis ATCC 49124] Length = 422 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPRTISEVIGQKHLVGEGKIICRMVEANM--LSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A +L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGSL----VLLLDEIHRLDKAKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|227519321|ref|ZP_03949370.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX0104] gi|227555471|ref|ZP_03985518.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis HH22] gi|229545438|ref|ZP_04434163.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX1322] gi|255975483|ref|ZP_05426069.1| AAA ATPase [Enterococcus faecalis T2] gi|256762908|ref|ZP_05503488.1| recombination factor protein RarA [Enterococcus faecalis T3] gi|256853493|ref|ZP_05558863.1| recombination factor protein RarA [Enterococcus faecalis T8] gi|256961533|ref|ZP_05565704.1| AAA ATPase [Enterococcus faecalis Merz96] gi|257087183|ref|ZP_05581544.1| AAA ATPase [Enterococcus faecalis D6] gi|257090260|ref|ZP_05584621.1| recombination factor protein rarA [Enterococcus faecalis CH188] gi|257419659|ref|ZP_05596653.1| recombination factor protein rarA [Enterococcus faecalis T11] gi|293384708|ref|ZP_06630563.1| ATPase, AAA family [Enterococcus faecalis R712] gi|293387408|ref|ZP_06631963.1| ATPase, AAA family [Enterococcus faecalis S613] gi|294779740|ref|ZP_06745127.1| recombination factor protein RarA [Enterococcus faecalis PC1.1] gi|307268134|ref|ZP_07549521.1| recombination factor protein RarA [Enterococcus faecalis TX4248] gi|307277701|ref|ZP_07558787.1| recombination factor protein RarA [Enterococcus faecalis TX0860] gi|307287876|ref|ZP_07567909.1| recombination factor protein RarA [Enterococcus faecalis TX0109] gi|307295905|ref|ZP_07575737.1| recombination factor protein RarA [Enterococcus faecalis TX0411] gi|312900874|ref|ZP_07760168.1| recombination factor protein RarA [Enterococcus faecalis TX0470] gi|312902758|ref|ZP_07761962.1| recombination factor protein RarA [Enterococcus faecalis TX0635] gi|312908306|ref|ZP_07767270.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 512] gi|312910620|ref|ZP_07769462.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 516] gi|227073250|gb|EEI11213.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX0104] gi|227175393|gb|EEI56365.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis HH22] gi|229309354|gb|EEN75341.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX1322] gi|255968355|gb|EET98977.1| AAA ATPase [Enterococcus faecalis T2] gi|256684159|gb|EEU23854.1| recombination factor protein RarA [Enterococcus faecalis T3] gi|256711952|gb|EEU26990.1| recombination factor protein RarA [Enterococcus faecalis T8] gi|256952029|gb|EEU68661.1| AAA ATPase [Enterococcus faecalis Merz96] gi|256995213|gb|EEU82515.1| AAA ATPase [Enterococcus faecalis D6] gi|256999072|gb|EEU85592.1| recombination factor protein rarA [Enterococcus faecalis CH188] gi|257161487|gb|EEU91447.1| recombination factor protein rarA [Enterococcus faecalis T11] gi|291078015|gb|EFE15379.1| ATPase, AAA family [Enterococcus faecalis R712] gi|291083199|gb|EFE20162.1| ATPase, AAA family [Enterococcus faecalis S613] gi|294453114|gb|EFG21529.1| recombination factor protein RarA [Enterococcus faecalis PC1.1] gi|306496236|gb|EFM65815.1| recombination factor protein RarA [Enterococcus faecalis TX0411] gi|306501021|gb|EFM70328.1| recombination factor protein RarA [Enterococcus faecalis TX0109] gi|306505580|gb|EFM74764.1| recombination factor protein RarA [Enterococcus faecalis TX0860] gi|306515524|gb|EFM84052.1| recombination factor protein RarA [Enterococcus faecalis TX4248] gi|310625720|gb|EFQ09003.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 512] gi|310633812|gb|EFQ17095.1| recombination factor protein RarA [Enterococcus faecalis TX0635] gi|311289168|gb|EFQ67724.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 516] gi|311291973|gb|EFQ70529.1| recombination factor protein RarA [Enterococcus faecalis TX0470] gi|315025984|gb|EFT37916.1| recombination factor protein RarA [Enterococcus faecalis TX2137] gi|315028905|gb|EFT40837.1| recombination factor protein RarA [Enterococcus faecalis TX4000] gi|315033296|gb|EFT45228.1| recombination factor protein RarA [Enterococcus faecalis TX0017] gi|315143409|gb|EFT87425.1| recombination factor protein RarA [Enterococcus faecalis TX2141] gi|315147642|gb|EFT91658.1| recombination factor protein RarA [Enterococcus faecalis TX4244] gi|315149228|gb|EFT93244.1| recombination factor protein RarA [Enterococcus faecalis TX0012] gi|315163672|gb|EFU07689.1| recombination factor protein RarA [Enterococcus faecalis TX1302] gi|315167496|gb|EFU11513.1| recombination factor protein RarA [Enterococcus faecalis TX1341] gi|315169388|gb|EFU13405.1| recombination factor protein RarA [Enterococcus faecalis TX1342] gi|315574550|gb|EFU86741.1| recombination factor protein RarA [Enterococcus faecalis TX0309B] gi|315576689|gb|EFU88880.1| recombination factor protein RarA [Enterococcus faecalis TX0630] gi|315581808|gb|EFU93999.1| recombination factor protein RarA [Enterococcus faecalis TX0309A] gi|327535494|gb|AEA94328.1| replication-associated recombination protein A [Enterococcus faecalis OG1RF] gi|329568738|gb|EGG50538.1| ATPase, AAA family [Enterococcus faecalis TX1467] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|315174320|gb|EFU18337.1| recombination factor protein RarA [Enterococcus faecalis TX1346] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|256619453|ref|ZP_05476299.1| recombination factor protein RarA [Enterococcus faecalis ATCC 4200] gi|256598980|gb|EEU18156.1| recombination factor protein RarA [Enterococcus faecalis ATCC 4200] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|167974477|ref|ZP_02556754.1| ATPase, AAA family [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188997939|gb|EDU67036.1| ATPase, AAA family [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 408 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 5/120 (4%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +L P ++++ GQ + + + + + +++F GPPG+GK++LA+V+A++L Sbjct: 8 TLKNPHSIDDIVGQKDLLDEIGIIRKMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLK 65 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 V F + PV+ L ++ D + ++ IDEIHRL+ ++IL P +E ++ L Sbjct: 66 VPF-AFFNPVVNSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLF 124 >gi|167975025|ref|ZP_02557302.1| ATPase, AAA family [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273283|ref|ZP_03205819.1| ATPase, AAA family [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659922|gb|EDX53302.1| ATPase, AAA family [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249803|gb|EDY74583.1| ATPase, AAA family [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 408 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 5/120 (4%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +L P ++++ GQ + + + + + +++F GPPG+GK++LA+V+A++L Sbjct: 8 TLKNPHSIDDIVGQKDLLDEIGIIRKMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLK 65 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 V F + PV+ L ++ D + ++ IDEIHRL+ ++IL P +E ++ L Sbjct: 66 VPF-AFFNPVVNSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLF 124 >gi|163942149|ref|YP_001647033.1| recombination factor protein RarA [Bacillus weihenstephanensis KBAB4] gi|163864346|gb|ABY45405.1| AAA ATPase central domain protein [Bacillus weihenstephanensis KBAB4] Length = 428 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 86/330 (26%), Positives = 130/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTL 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VTDEA A S G R A L + F A IT E Sbjct: 161 RALEDQEKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|257079358|ref|ZP_05573719.1| AAA ATPase [Enterococcus faecalis JH1] gi|256987388|gb|EEU74690.1| AAA ATPase [Enterococcus faecalis JH1] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|256964749|ref|ZP_05568920.1| AAA ATPase [Enterococcus faecalis HIP11704] gi|307272829|ref|ZP_07554076.1| recombination factor protein RarA [Enterococcus faecalis TX0855] gi|256955245|gb|EEU71877.1| AAA ATPase [Enterococcus faecalis HIP11704] gi|306510443|gb|EFM79466.1| recombination factor protein RarA [Enterococcus faecalis TX0855] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|257452139|ref|ZP_05617438.1| recombination factor protein RarA [Fusobacterium sp. 3_1_5R] gi|257466067|ref|ZP_05630378.1| recombination factor protein RarA [Fusobacterium gonidiaformans ATCC 25563] gi|315917223|ref|ZP_07913463.1| ATPase [Fusobacterium gonidiaformans ATCC 25563] gi|317058684|ref|ZP_07923169.1| ATPase [Fusobacterium sp. 3_1_5R] gi|313684360|gb|EFS21195.1| ATPase [Fusobacterium sp. 3_1_5R] gi|313691098|gb|EFS27933.1| ATPase [Fusobacterium gonidiaformans ATCC 25563] Length = 410 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 101/228 (44%), Gaps = 45/228 (19%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L+E GQ + L+ IE + L + +F GPPG GK+TL ++++ + Sbjct: 18 LRPQSLDEIFGQEKLLGKHGVLRKLIETGR-----LTNSIFFGPPGCGKSTLGEIISHTM 72 Query: 79 GVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A D+ ++ N+E + +LF+DEIHR + + ++ L E+ Sbjct: 73 DCAFESLNA-TTASLQDIKEVVLRAKRNVEYYQKKTILFLDEIHRFNKLQQDALLSYCEN 131 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLK 189 F LI ATT L N L R + E ++++ Sbjct: 132 --------------------GTFILIGATTENPYYSLNNALLSRVMV-FEFKSLEKKEIQ 170 Query: 190 TIVQRGAKLTGLAVT---DEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 I++R G++++ +E E+A +G R+A L ++ + Sbjct: 171 QILKRAQTKIGISLSPFLEEVMSEMA---QGDSRVALNYLELYQNLKD 215 >gi|257082202|ref|ZP_05576563.1| recombination factor protein RarA [Enterococcus faecalis E1Sol] gi|257416415|ref|ZP_05593409.1| recombination factor protein RarA [Enterococcus faecalis AR01/DG] gi|256990232|gb|EEU77534.1| recombination factor protein RarA [Enterococcus faecalis E1Sol] gi|257158243|gb|EEU88203.1| recombination factor protein RarA [Enterococcus faecalis ARO1/DG] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRHLDEVVGQQHLVDPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|229549682|ref|ZP_04438407.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis ATCC 29200] gi|255972380|ref|ZP_05422966.1| recombination factor protein RarA [Enterococcus faecalis T1] gi|300861178|ref|ZP_07107265.1| recombination factor protein RarA [Enterococcus faecalis TUSoD Ef11] gi|312951281|ref|ZP_07770182.1| recombination factor protein RarA [Enterococcus faecalis TX0102] gi|229305162|gb|EEN71158.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis ATCC 29200] gi|255963398|gb|EET95874.1| recombination factor protein RarA [Enterococcus faecalis T1] gi|300850217|gb|EFK77967.1| recombination factor protein RarA [Enterococcus faecalis TUSoD Ef11] gi|310630717|gb|EFQ14000.1| recombination factor protein RarA [Enterococcus faecalis TX0102] gi|315152587|gb|EFT96603.1| recombination factor protein RarA [Enterococcus faecalis TX0031] gi|315159893|gb|EFU03910.1| recombination factor protein RarA [Enterococcus faecalis TX0312] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|315633927|ref|ZP_07889216.1| replication-associated recombination protein A [Aggregatibacter segnis ATCC 33393] gi|315477177|gb|EFU67920.1| replication-associated recombination protein A [Aggregatibacter segnis ATCC 33393] Length = 446 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 19/121 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL ++ GQ K +A +A + ++F GPPG GKTTLA+++A+ + Sbjct: 20 MRPTTLAQYCGQSHLLGEGKPLRKAIEA--GYVHSMIFWGPPGTGKTTLAEIIAQRIQAE 77 Query: 82 FRSTSGPVI-----------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 S AK LA L R +LF+DE+HR + ++ P +E Sbjct: 78 VERISAVTSGIKEIREAIEKAKQNKLAGL------RTILFVDEVHRFNKSQQDAFLPHIE 131 Query: 131 D 131 D Sbjct: 132 D 132 >gi|307275918|ref|ZP_07557051.1| recombination factor protein RarA [Enterococcus faecalis TX2134] gi|306507248|gb|EFM76385.1| recombination factor protein RarA [Enterococcus faecalis TX2134] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|257084820|ref|ZP_05579181.1| recombination factor protein RarA [Enterococcus faecalis Fly1] gi|256992850|gb|EEU80152.1| recombination factor protein RarA [Enterococcus faecalis Fly1] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|225075711|ref|ZP_03718910.1| hypothetical protein NEIFLAOT_00727 [Neisseria flavescens NRL30031/H210] gi|224952982|gb|EEG34191.1| hypothetical protein NEIFLAOT_00727 [Neisseria flavescens NRL30031/H210] Length = 435 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V + D+ + E +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVESG 130 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153 >gi|83593992|ref|YP_427744.1| recombination factor protein RarA [Rhodospirillum rubrum ATCC 11170] gi|83576906|gb|ABC23457.1| Recombination protein MgsA [Rhodospirillum rubrum ATCC 11170] Length = 439 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 19/148 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + V + R A L V+ GPPG GKTT+A+++A Sbjct: 18 LRPRQLAEVVGQ-----DHLVGPDGPLGRMTAAHRLASVVLWGPPGCGKTTIARLLADST 72 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 ++F S V A DL + T +R +LFIDEIHR + ++ P +ED Sbjct: 73 DLHFEPLSA-VFAGVADLRKIFTAARERRTVGRGTLLFIDEIHRFNRAQQDGFLPYVEDG 131 Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157 + ++VG S ++N LSR ++ Sbjct: 132 TV-VLVGATTENPSFELNAALLSRCQVL 158 >gi|257422233|ref|ZP_05599223.1| recombination factor protein rarA [Enterococcus faecalis X98] gi|257164057|gb|EEU94017.1| recombination factor protein rarA [Enterococcus faecalis X98] gi|315157272|gb|EFU01289.1| recombination factor protein RarA [Enterococcus faecalis TX0043] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|256959292|ref|ZP_05563463.1| recombination factor protein RarA [Enterococcus faecalis DS5] gi|256949788|gb|EEU66420.1| recombination factor protein RarA [Enterococcus faecalis DS5] gi|315034534|gb|EFT46466.1| recombination factor protein RarA [Enterococcus faecalis TX0027] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|308181125|ref|YP_003925253.1| recombination factor protein RarA [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046616|gb|ADN99159.1| recombination factor protein RarA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 426 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL++ GQ + K+ KA+ L ++ GPPG GKT++A +A Sbjct: 9 MRPKTLKDVVGQQQLVGPGKIIARMVKAKR--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DEIHRL ++ L P +E ++ +++G Sbjct: 67 FRMLNAATDSKKQLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYISIN 135 >gi|29376501|ref|NP_815655.1| recombination factor protein RarA [Enterococcus faecalis V583] gi|29343965|gb|AAO81725.1| ATPase, AAA family [Enterococcus faecalis V583] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|28378917|ref|NP_785809.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1] gi|254557122|ref|YP_003063539.1| recombination factor protein RarA [Lactobacillus plantarum JDM1] gi|300769682|ref|ZP_07079565.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28271754|emb|CAD64660.1| chromosome segregation helicase (putative) [Lactobacillus plantarum WCFS1] gi|254046049|gb|ACT62842.1| recombination factor protein RarA [Lactobacillus plantarum JDM1] gi|300492725|gb|EFK27910.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 426 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL++ GQ + K+ KA+ L ++ GPPG GKT++A +A Sbjct: 9 MRPKTLKDVVGQQQLVGPGKIIARMVKAKR--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DEIHRL ++ L P +E ++ +++G Sbjct: 67 FRMLNAATDSKKQLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYISIN 135 >gi|312171938|emb|CBX80195.1| Uncharacterized protein ycaJ [Erwinia amylovora ATCC BAA-2158] Length = 447 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 17/146 (11%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 SRN Q A + +RPRTL E+ GQ + A L IEA + L ++ GPPG Sbjct: 8 FSRNEFQPLA--ARMRPRTLAEYIGQQHLLAAGKPLPRAIEAGQ-----LHSMILWGPPG 60 Query: 65 LGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GKTTLA+++ + TSG I +A + A + R +LF+DE+HR + Sbjct: 61 TGKTTLAEIIGHYGQADVERISAVTSGVKDIREAIECARQNRHAGRRTILFVDEVHRFNK 120 Query: 120 IVEEILYPAMEDFQLDLM--VGEGPS 143 ++ P +ED + + E PS Sbjct: 121 SQQDAFLPHIEDGTITFIGATTENPS 146 >gi|295113243|emb|CBL31880.1| Recombination protein MgsA [Enterococcus sp. 7L76] gi|315161375|gb|EFU05392.1| recombination factor protein RarA [Enterococcus faecalis TX0645] gi|323481114|gb|ADX80553.1| recombination factor protein RarA [Enterococcus faecalis 62] Length = 425 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DEIHRL ++ L P +E+ ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|292487820|ref|YP_003530695.1| hypothetical protein EAMY_1337 [Erwinia amylovora CFBP1430] gi|292899048|ref|YP_003538417.1| ATPase [Erwinia amylovora ATCC 49946] gi|291198896|emb|CBJ46006.1| putative ATPase [Erwinia amylovora ATCC 49946] gi|291553242|emb|CBA20287.1| Uncharacterized protein ycaJ [Erwinia amylovora CFBP1430] Length = 447 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 17/146 (11%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 SRN Q A + +RPRTL E+ GQ + A L IEA + L ++ GPPG Sbjct: 8 FSRNEFQPLA--ARMRPRTLAEYIGQRHLLAAWKPLPRAIEAGQ-----LHSMILWGPPG 60 Query: 65 LGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 GKTTLA+++ + TSG I +A + A + R +LF+DE+HR + Sbjct: 61 TGKTTLAEIIGHYGQADVERISAVTSGVKDIREAIERARQNRHAGRRTILFVDEVHRFNK 120 Query: 120 IVEEILYPAMEDFQLDLM--VGEGPS 143 ++ P +ED + + E PS Sbjct: 121 SQQDAFLPHIEDGTITFIGATTENPS 146 >gi|194365713|ref|YP_002028323.1| recombination factor protein RarA [Stenotrophomonas maltophilia R551-3] gi|194348517|gb|ACF51640.1| AAA ATPase central domain protein [Stenotrophomonas maltophilia R551-3] Length = 453 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 95/221 (42%), Gaps = 41/221 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 29 MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAEYS 83 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ S P + + AA R VLF+DE+HR + ++ P +E Sbjct: 84 DAEFRAISAVLSGLPEVRQVLAEAAQRFAEGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 143 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 + L VG S ++N LSR + ++ T V L L DR Sbjct: 144 I-LFVGATTENPSFELNSALLSRCRVHVLEGVSPTDIVEALERALGDR------------ 190 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 +RG G+ V E EIA + G R A LL Sbjct: 191 -------ERGLGEEGIEVAPELLLEIATAADGDVRRALTLL 224 >gi|85715102|ref|ZP_01046086.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Nitrobacter sp. Nb-311A] gi|85698017|gb|EAQ35890.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Nitrobacter sp. Nb-311A] Length = 443 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL + GQ + R+ L ++F GPPG GKTT+A+++A ++ Sbjct: 30 LRPQTLPDVVGQDHILGPDGALTRMLETRS--LGSLIFWGPPGTGKTTVARLLADATALH 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + R +LF+DE+HR + ++ P MED + Sbjct: 88 FEQLSA-VFSGVADLKKVFDAARARRESGTGTLLFVDEVHRFNRAQQDSFLPVMEDGTV- 145 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 146 VLVGATTENPSFELN 160 >gi|3136020|emb|CAA19102.1| hypothetical protein MLCB1259.27 [Mycobacterium leprae] Length = 447 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 38/184 (20%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + S L+ +E + + L GPPG GKTTLA ++++ Sbjct: 31 MRPASLDELVGQGHLLAPGSPLRRLVEGSGVVSAILH-----GPPGCGKTTLAALISQAT 85 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A D+ A+L R VLFIDE+HR S ++ L A+E+ Sbjct: 86 GHRFEALSA-LSAGVKDVRAVLKIARSALLSGKRTVLFIDEVHRFSKTQQDALLSAVENR 144 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + L+ E PS F+++A PL R I ++L +D++ Sbjct: 145 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLNADDIRA 183 Query: 191 IVQR 194 +VQR Sbjct: 184 VVQR 187 >gi|76787547|ref|YP_330532.1| recombination factor protein RarA [Streptococcus agalactiae A909] gi|77405039|ref|ZP_00782139.1| ATPase, AAA family [Streptococcus agalactiae H36B] gi|76562604|gb|ABA45188.1| ATPase, AAA family [Streptococcus agalactiae A909] gi|77176333|gb|EAO79102.1| ATPase, AAA family [Streptococcus agalactiae H36B] Length = 422 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR + E GQ N K+ A L ++ GPPG+GKT++A +A Sbjct: 9 MRPRNINEIIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|294085984|ref|YP_003552744.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665559|gb|ADE40660.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Candidatus Puniceispirillum marinum IMCC1322] Length = 463 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 12/144 (8%) Query: 9 SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 +++V +D ++ LRPRTL++ GQ + + AR L ++ GPPG GK Sbjct: 31 NKDVPPKDVPLAEALRPRTLDDVVGQ-DGLLGEDGRLRQMLARGN-LASIILWGPPGTGK 88 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIV 121 TT+A+++A + F S V DL + T E R +LF+DE+HR + Sbjct: 89 TTIARLLADAASMEFEPVSA-VFDGVADLRKIFTRAETRLRDGKRTLLFVDEVHRFNKAQ 147 Query: 122 EEILYPAMEDFQLDLM--VGEGPS 143 ++ L P +ED + L+ E PS Sbjct: 148 QDGLLPRVEDGTVTLVGATTENPS 171 >gi|153941104|ref|YP_001391867.1| recombination factor protein RarA [Clostridium botulinum F str. Langeland] gi|152937000|gb|ABS42498.1| ATPase, AAA family [Clostridium botulinum F str. Langeland] gi|295319891|gb|ADG00269.1| ATPase, AAA family [Clostridium botulinum F str. 230613] Length = 416 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 26/257 (10%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ LE+F GQ S K K ++ + + +F GPPG GKTTLA ++A + Sbjct: 7 LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64 Query: 81 NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + I ++ + + +L + VL+IDE+ + ++ L +ED ++ L Sbjct: 65 KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124 Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186 + E P K LSR + R ++ N L D+ GI I+ +F +E Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYSFESLE 183 Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237 + I Q + + LAV I + +A +R E A Sbjct: 184 YIGEICQGDYRKAYNILELAVNSHCGFNIEITLDYIESLAQSNIRADATGDEYYNILSAF 243 Query: 238 AKTITREIADAALLRLA 254 K+I ADAA+ LA Sbjct: 244 QKSIRGSDADAAVHYLA 260 >gi|296116064|ref|ZP_06834684.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC 23769] gi|295977418|gb|EFG84176.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC 23769] Length = 431 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 14/138 (10%) Query: 22 LRPRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LRP +E+ GQ + + A R L ++F GPPG GKTTLA+++A G+ Sbjct: 17 LRPERIEDVIGQAHLMAPDRPIGRMVASGR---LSSMIFWGPPGTGKTTLARILAARSGM 73 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHRLSIIVEEILYPAMEDF 132 F S V++ DL L + VLF+DEIHR + ++ L P +ED Sbjct: 74 AFEQISA-VMSGMADLKKALARAQGLRQQGQTKGMVLFVDEIHRWNKAQQDALLPYVEDG 132 Query: 133 QLDLMVGEGPSARSVKIN 150 + +++G S ++N Sbjct: 133 TI-VLIGATTENPSFELN 149 >gi|118466446|ref|YP_882617.1| recombination factor protein RarA [Mycobacterium avium 104] gi|118167733|gb|ABK68630.1| ATP/GTP-binding protein [Mycobacterium avium 104] Length = 446 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 38/184 (20%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + S L+ +E + + + GPPG GKTTLA ++++ Sbjct: 31 MRPASLDEVVGQDHLLAPGSPLRRLVEGS-----GVASAILYGPPGSGKTTLAALISQAT 85 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A D+ A++ + ++ VLFIDE+HR S ++ L A+E+ Sbjct: 86 GRRFEALSA-LSAGVKDVRAVIESARTALLRGEQTVLFIDEVHRFSKTQQDALLSAVENR 144 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + L+ E PS F+++A PL R I ++L +D++T Sbjct: 145 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLSADDIRT 183 Query: 191 IVQR 194 +V+R Sbjct: 184 VVRR 187 >gi|104773804|ref|YP_618784.1| recombination factor protein RarA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513810|ref|YP_812716.1| recombination factor protein RarA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422885|emb|CAI97547.1| Putative ATPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093125|gb|ABJ58278.1| Recombination protein MgsA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125468|gb|ADY84798.1| Chromosomal segregation helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 434 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+++++ GQ K+ +AR L ++ GPPG+GKT++A +A Sbjct: 8 MRPQSIDQVVGQQHLVGPKKIIRRMVEARQ--LSSMILYGPPGIGKTSIASAIAGSSKYA 65 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR + +A G ++ + VL +DEIHRL+ + ++ L P +E Q Sbjct: 66 FRQLNAATDGQKELSQVAAEGKMSGTV-------VLLLDEIHRLNKVKQDFLLPLLESGQ 118 Query: 134 LDLMVG 139 + +M+G Sbjct: 119 V-IMIG 123 >gi|315287521|gb|EFU46932.1| replication-associated recombination protein A [Escherichia coli MS 110-3] Length = 428 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + K A +A L ++ GPPG GKTTLA+V+AR + Sbjct: 1 MRPENLAQYIGQQHLLAVGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYANAD 58 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A N R +LF+DE+HR + ++ P +ED + Sbjct: 59 VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118 Query: 137 M--VGEGPS 143 + E PS Sbjct: 119 IGATTENPS 127 >gi|319404398|emb|CBI78001.1| ATPase, AAA family [Bartonella rochalimae ATCC BAA-1498] Length = 439 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 39/234 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L E GQ N + E +R + + ++F GPPG GKTT+A+++A E Sbjct: 24 MRPRSLHEVVGQ-----NHLIGAEGFLSRMVASGSFSSMIFWGPPGTGKTTVARLLALET 78 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 F S + +L + R +LFIDEIHR + ++ P MED Sbjct: 79 NFAFEQVSA-IFTGISELKKIFEVARARLMSGCQTLLFIDEIHRFNRSQQDSFLPFMEDG 137 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 + ++VG S ++N A +R +LT D + I ++ Sbjct: 138 TI-ILVGATTENPSFELN------AALLSRARVLTFRAHDNASLDI------------LL 178 Query: 193 QRGAKLTGLAVT-DEAACEIAMR-SRGTPRIAGRL---LRRVRDFAEVAHAKTI 241 +R K+ G ++ D+ A E+ +R S G R A L + R EV +A+T+ Sbjct: 179 KRAEKVEGRSLPLDDHAREVLIRISDGDARAALTLAEDIWRAAQSEEVFNAETL 232 >gi|307825885|ref|ZP_07656100.1| AAA ATPase central domain protein [Methylobacter tundripaludum SV96] gi|307733004|gb|EFO03866.1| AAA ATPase central domain protein [Methylobacter tundripaludum SV96] Length = 435 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 12/118 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP L ++ GQ K EA A R L ++F GPPG GKTTLA+++A+ Sbjct: 14 MRPTELADYVGQQHILKPGKPLYEAIASGR---LHSMIFWGPPGTGKTTLARLIAQHSDA 70 Query: 81 NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F S V++ ++ A + + R +LF+DE+HR + ++ P +ED Sbjct: 71 EFMPISA-VLSGVKEIRAAVAEAKKIQLEQHRRTILFVDEVHRFNKSQQDAFLPHVED 127 >gi|41407170|ref|NP_960006.1| recombination factor protein RarA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395521|gb|AAS03389.1| hypothetical protein MAP_1072 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 450 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 38/184 (20%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + S L+ +E + + + GPPG GKTTLA ++++ Sbjct: 35 MRPASLDEVVGQDHLLAPGSPLRRLVEGS-----GVASAILYGPPGSGKTTLAALISQAT 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A D+ A++ + ++ VLFIDE+HR S ++ L A+E+ Sbjct: 90 GRRFEALSA-LSAGVKDVRAVIESARTALLRGEQTVLFIDEVHRFSKTQQDALLSAVENR 148 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + L+ E PS F+++A PL R I ++L +D++T Sbjct: 149 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLSADDIRT 187 Query: 191 IVQR 194 +V+R Sbjct: 188 VVRR 191 >gi|323359961|ref|YP_004226357.1| ATPase [Microbacterium testaceum StLB037] gi|323276332|dbj|BAJ76477.1| ATPase [Microbacterium testaceum StLB037] Length = 469 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 13/134 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + S L + + + V+ GPPG GKTTLAQ +AR Sbjct: 18 MRPTSLDEVAGQGHLLRPGSPLVTLATTDSSASGSAVSVILWGPPGTGKTTLAQAIARSS 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMED 131 G F S + A D+ ++ L RD +LF+DEIHR + ++ L P +E+ Sbjct: 78 GRRFVELSA-ITAGVKDVREVMQEALTQRDLYGQSTILFLDEIHRFTKAQQDALLPGVEN 136 Query: 132 FQLDLMVG--EGPS 143 + L+ E PS Sbjct: 137 GWVVLIAATTENPS 150 >gi|319943868|ref|ZP_08018149.1| replication-associated recombination protein A [Lautropia mirabilis ATCC 51599] gi|319743101|gb|EFV95507.1| replication-associated recombination protein A [Lautropia mirabilis ATCC 51599] Length = 490 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 17/144 (11%) Query: 21 LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP TL+E GQ L++ E+ + + ++ GPPG+GKTTLA++ A Sbjct: 51 LLRPATLDEVIGQKHLLGPERPLRLAFESGQPHS-----MILWGPPGVGKTTLARLTANA 105 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED 131 G F + S V + D+ + + E +LFIDEIHR + ++ L P E Sbjct: 106 FGHEFIALSA-VFSGVKDIRSAMEQAERNLQAGRHTILFIDEIHRFNKAQQDALLPYAES 164 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS LSR Sbjct: 165 GLITLIGATTENPSFEVNSALLSR 188 >gi|268590184|ref|ZP_06124405.1| replication-associated recombination protein A [Providencia rettgeri DSM 1131] gi|291314464|gb|EFE54917.1| replication-associated recombination protein A [Providencia rettgeri DSM 1131] Length = 447 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 11/147 (7%) Query: 6 GLLSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 G LS + SQ + + +RP TLE++ GQ + K A KA L ++ GPP Sbjct: 2 GNLSLDFSQNEFQPLAARMRPETLEQYIGQKHLLAEGKPLPRAIKA--GHLHSMILWGPP 59 Query: 64 GLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 G GKTTLA+++ + TSG I ++ + A + R +LF+DE+HR + Sbjct: 60 GTGKTTLAEIIGNYAQADIERISAVTSGIKEIRESIEKARQNRSAGRRTILFVDEVHRFN 119 Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPS 143 ++ P +ED + + E PS Sbjct: 120 KSQQDAFLPHIEDGTITFIGATTENPS 146 >gi|325204241|gb|ADY99694.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M01-240355] Length = 436 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V + D+ + E +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVESG 130 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153 >gi|261392480|emb|CAX50029.1| putative ATPase [Neisseria meningitidis 8013] Length = 436 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V + D+ + E +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESG 130 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153 >gi|225024225|ref|ZP_03713417.1| hypothetical protein EIKCOROL_01097 [Eikenella corrodens ATCC 23834] gi|224943250|gb|EEG24459.1| hypothetical protein EIKCOROL_01097 [Eikenella corrodens ATCC 23834] Length = 446 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + A ++V +E + + +L GPPG+GKTTLA+++A+ Sbjct: 18 LRPHTLDDVVGQQHLIGAGKPMRVAVEGGQPHS-----MLLWGPPGVGKTTLARILAQSF 72 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V + D+ + E +LF+DE+HR + ++ P +E Sbjct: 73 NAQFLPVSA-VFSGVKDIREAVNKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVESG 131 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 132 LLTFIGATTENPSFEVNPALLSR 154 >gi|325142473|gb|EGC64877.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis 961-5945] gi|325198390|gb|ADY93846.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis G2136] Length = 436 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V + D+ + E +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESG 130 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153 >gi|91209937|ref|YP_539923.1| recombination factor protein RarA [Escherichia coli UTI89] gi|117623076|ref|YP_851989.1| recombination factor protein RarA [Escherichia coli APEC O1] gi|218557800|ref|YP_002390713.1| recombination factor protein RarA [Escherichia coli S88] gi|237707118|ref|ZP_04537599.1| recombination factor protein RarA [Escherichia sp. 3_2_53FAA] gi|91071511|gb|ABE06392.1| putative polynucleotide enzyme [Escherichia coli UTI89] gi|115512200|gb|ABJ00275.1| putative polynucleotide enzyme [Escherichia coli APEC O1] gi|218364569|emb|CAR02255.1| recombination protein [Escherichia coli S88] gi|226898328|gb|EEH84587.1| recombination factor protein RarA [Escherichia sp. 3_2_53FAA] gi|281178026|dbj|BAI54356.1| putative polynucleotide enzyme [Escherichia coli SE15] gi|294490173|gb|ADE88929.1| putative DNA recombination-associated ATPase RarA [Escherichia coli IHE3034] gi|307627678|gb|ADN71982.1| recombination factor protein RarA [Escherichia coli UM146] gi|320196612|gb|EFW71235.1| recombination factor protein RarA [Escherichia coli WV_060327] gi|323953398|gb|EGB49264.1| ATPase [Escherichia coli H252] gi|323958199|gb|EGB53908.1| ATPase [Escherichia coli H263] Length = 447 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + K A +A L ++ GPPG GKTTLA+V+AR + Sbjct: 20 MRPENLAQYIGQQHLLAVGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYANAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A N R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|92113453|ref|YP_573381.1| recombination factor protein RarA [Chromohalobacter salexigens DSM 3043] gi|91796543|gb|ABE58682.1| Recombination protein MgsA [Chromohalobacter salexigens DSM 3043] Length = 469 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L+++ GQ V L+ E+ R+ ++ GPPG+GKTTLA ++A Sbjct: 43 MRPRRLDDYVGQEALVGPGKPLRRMAESGAVRS-----MILWGPPGVGKTTLADILADAS 97 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRDV------LFIDEIHRLSIIVEEILYPAMEDF 132 G S V+A D+ A + + V LF+DEIHRL+ ++ L P +E Sbjct: 98 GAMLERLSA-VMAGVKDIRAAVERAREGQVRGQPTLLFLDEIHRLNKSQQDALLPHVESG 156 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L L+ E PS LSR Sbjct: 157 LLTLIGATTENPSFEVNSALLSR 179 >gi|88803489|ref|ZP_01119014.1| putative AAA family ATPase protein [Polaribacter irgensii 23-P] gi|88780501|gb|EAR11681.1| putative AAA family ATPase protein [Polaribacter irgensii 23-P] Length = 423 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TLE++ Q + + K + ++ GPPG+GKTTLA ++A Sbjct: 9 IRPKTLEDYVSQQHLVGENGILTKLIKQGI--IPSLILWGPPGIGKTTLANIIATTSNRP 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VI KA L T +LFIDEIHR S ++ L A+E Sbjct: 67 FYTLSAISSGVKDVRDVIEKAKKSGGLFT--AKNPILFIDEIHRFSKSQQDSLLGAVEKG 124 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147 >gi|329938952|ref|ZP_08288326.1| ATP/GTP binding protein [Streptomyces griseoaurantiacus M045] gi|329301837|gb|EGG45730.1| ATP/GTP binding protein [Streptomyces griseoaurantiacus M045] Length = 453 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 13/129 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFI-EAAKARAEA-LDHVLFVGPPGLGKTTLAQVVAR 76 +RPR+L+E GQ ++ S L+ + E A + A V+ GPPG GKTTLA VV++ Sbjct: 27 MRPRSLDEVMGQQHLLKPGSPLRRLVGEGTSAGSPAGPSSVILWGPPGTGKTTLAYVVSK 86 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129 F S + A ++ A++ VLF+DEIHR S ++ L PA+ Sbjct: 87 ATNKRFVELSA-ITAGVKEVRAVIDGARRATGGYGTETVLFLDEIHRFSKAQQDSLLPAV 145 Query: 130 EDFQLDLMV 138 E+ + L+ Sbjct: 146 ENRWVTLIA 154 >gi|220912773|ref|YP_002488082.1| recombination factor protein RarA [Arthrobacter chlorophenolicus A6] gi|219859651|gb|ACL39993.1| AAA ATPase central domain protein [Arthrobacter chlorophenolicus A6] Length = 466 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 14/135 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFV-GPPGLGKTTLAQVVARE 77 +RPRTL++ GQ + S L++ A A A L + GPPG GKTTLA V+AR Sbjct: 37 MRPRTLDDVVGQQHLLGQGSPLRLLAAGADAAGPAGPSSLILWGPPGTGKTTLAHVIARG 96 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAME 130 G F S + A D+ ++ + L RD VLF+DEIHR + ++ L P +E Sbjct: 97 PGRKFVELSA-ITAGVKDVRRVMDDALTARDLYKTTTVLFLDEIHRFNKAQQDALLPGVE 155 Query: 131 DFQLDLMVG--EGPS 143 + + L+ E PS Sbjct: 156 NRWVVLVAATTENPS 170 >gi|71282024|ref|YP_269469.1| recombination factor protein RarA [Colwellia psychrerythraea 34H] gi|71147764|gb|AAZ28237.1| ATPase, AAA family [Colwellia psychrerythraea 34H] Length = 511 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 17/122 (13%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL ++ GQ S L IE + ++F GPPG GKTTLA+++A+ Sbjct: 63 MRPKTLADYVGQQHILGGDSPLAQSIEQGHCHS-----LIFWGPPGSGKTTLAEIIAQHA 117 Query: 79 GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 TSG I KA A + R VLF+DE+HR + ++ P + Sbjct: 118 NAEIERVSAVTSGIKEIRSAIEKAKLRAQGEGANKRRTVLFVDEVHRFNKSQQDAFLPHI 177 Query: 130 ED 131 ED Sbjct: 178 ED 179 >gi|25012002|ref|NP_736397.1| recombination factor protein RarA [Streptococcus agalactiae NEM316] gi|77412913|ref|ZP_00789117.1| ATPase, AAA family [Streptococcus agalactiae 515] gi|24413545|emb|CAD47623.1| Unknown [Streptococcus agalactiae NEM316] gi|77161053|gb|EAO72160.1| ATPase, AAA family [Streptococcus agalactiae 515] Length = 422 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR + E GQ N K+ A L ++ GPPG+GKT++A +A Sbjct: 9 MRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|315640057|ref|ZP_07895182.1| AAA family ATPase [Enterococcus italicus DSM 15952] gi|315484185|gb|EFU74656.1| AAA family ATPase [Enterococcus italicus DSM 15952] Length = 423 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ K+ A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRTLDEVVGQQHLVGPGKIIRRMVDAKL--LSSMILYGPPGTGKTSIASAIAGSTQFA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR+ + K + A + +L +DE+HRL ++ L P +E+ ++ +++G Sbjct: 67 FRTLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLENGRI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|119962942|ref|YP_948025.1| recombination factor protein RarA [Arthrobacter aurescens TC1] gi|119949801|gb|ABM08712.1| putative ATPase, AAA family [Arthrobacter aurescens TC1] Length = 497 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 14/135 (10%) Query: 22 LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPR+L+E GQ + ++ A A V+ GPPG GKTTLA V+AR Sbjct: 41 MRPRSLDEVVGQQHLLGQGSPLRQLAAGADAAGPAGPSSVILWGPPGTGKTTLAHVIARG 100 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAME 130 G F S + A D+ ++ L RD VLF+DEIHR + ++ L P +E Sbjct: 101 PGRKFVELSA-ITAGVKDVRRVMDEALTARDLYKKTTVLFLDEIHRFNKAQQDALLPGVE 159 Query: 131 DFQLDLMVG--EGPS 143 + + L+ E PS Sbjct: 160 NRWVVLVAATTENPS 174 >gi|257896971|ref|ZP_05676624.1| AAA ATPase [Enterococcus faecium Com12] gi|293378673|ref|ZP_06624832.1| recombination factor protein RarA [Enterococcus faecium PC4.1] gi|257833536|gb|EEV59957.1| AAA ATPase [Enterococcus faecium Com12] gi|292642713|gb|EFF60864.1| recombination factor protein RarA [Enterococcus faecium PC4.1] Length = 428 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E GQ K+ AR L ++ GPPG GKT++A +A Sbjct: 9 MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DE+HRL ++ L P +E ++ +++G Sbjct: 67 FRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|237748949|ref|ZP_04579429.1| recombination factor protein RarA [Oxalobacter formigenes OXCC13] gi|229380311|gb|EEO30402.1| recombination factor protein RarA [Oxalobacter formigenes OXCC13] Length = 430 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 106/245 (43%), Gaps = 46/245 (18%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ ++E GQ L+V E+ + + ++ GPPG+GKTTLA+++A Sbjct: 10 LRPKNIDEVVGQQHLLGPGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMADGF 64 Query: 79 GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V++ D+ + +N R +LF+DE+HR + ++ P +E Sbjct: 65 NAEFIALSA-VLSGVKDIRDAVEHAKIIRSNSGRRTILFVDEVHRFNKSQQDAFLPHVES 123 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLK 189 FT I ATT + N L R + + L +DL Sbjct: 124 --------------------GLFTFIGATTENPSFEVNNALLSRAAVYV-LQSLGNDDLN 162 Query: 190 TIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 T++ R LT L ++ EA + M + G R +LL + A+ A K + + D Sbjct: 163 TLLTRALDEILTDLTLSGEARDMLVMSADGDAR---KLLNNLEITAQAATTK--KQAVID 217 Query: 248 AALLR 252 LL+ Sbjct: 218 VTLLK 222 >gi|77409126|ref|ZP_00785840.1| ATPase, AAA family [Streptococcus agalactiae COH1] gi|77172254|gb|EAO75409.1| ATPase, AAA family [Streptococcus agalactiae COH1] Length = 422 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR + E GQ N K+ A L ++ GPPG+GKT++A +A Sbjct: 9 MRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|317402140|gb|EFV82732.1| hypothetical protein HMPREF0005_00317 [Achromobacter xylosoxidans C54] Length = 446 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL + GQ L+V E+ + + ++F GPPG+GKTTLA+++A Sbjct: 22 LRPRTLADVVGQSHLLGPDKPLRVAFESGRPHS-----MIFWGPPGVGKTTLARLMADGF 76 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED-- 131 F + S + I A +A + R +LF+DE+HR + ++ P +E Sbjct: 77 DAQFIAISAVLGGVKDIRDAVTVAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVESGL 136 Query: 132 FQLDLMVGEGPSARSVKINLSR 153 F E PS LSR Sbjct: 137 FTFIGATTENPSFEVNSALLSR 158 >gi|241761401|ref|ZP_04759489.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374308|gb|EER63805.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 449 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI LRP+ L + GQ + A L ++ GPPG GKT++AQ++A Sbjct: 28 ADI--LRPKHLSDVIGQAHVTGENGII--GRMVAAGRLSSLILWGPPGTGKTSIAQLLAE 83 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 +G+ F S + + DL + E + +LFIDEIHR + ++ P +E Sbjct: 84 SVGIRFEMVSA-IFSGVADLKKIFLKAEHHRQQGRQTLLFIDEIHRFNKGQQDSFLPYIE 142 Query: 131 D--FQLDLMVGEGPS 143 + F L E PS Sbjct: 143 NGTFVLVGATTENPS 157 >gi|257888138|ref|ZP_05667791.1| AAA ATPase [Enterococcus faecium 1,141,733] gi|257824192|gb|EEV51124.1| AAA ATPase [Enterococcus faecium 1,141,733] Length = 428 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E GQ K+ AR L ++ GPPG GKT++A +A Sbjct: 9 MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DE+HRL ++ L P +E ++ +++G Sbjct: 67 FRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|254480362|ref|ZP_05093609.1| ATPase, AAA family protein [marine gamma proteobacterium HTCC2148] gi|214038945|gb|EEB79605.1| ATPase, AAA family protein [marine gamma proteobacterium HTCC2148] Length = 442 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 36/254 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+ + GQ + K E+ R L ++F GPPG+GKTTLA++ A + Sbjct: 25 LRPADLQSYAGQSHLLAPGKPLRESIDRRQ--LHSMIFWGPPGVGKTTLARIAAEAADAH 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----RD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V++ ++ + RD VLF+DE+HR + ++ P +ED + Sbjct: 83 FLQISA-VLSGVKEIREAIAQARQHKSSGRDTVLFVDEVHRFNKSQQDAFLPYVEDGTV- 140 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 + VG S ++N + + TRV +L EI +L +++RG Sbjct: 141 IFVGATTENPSFELN----NALLSRTRV--------------YKLRSLEISELVGVLKRG 182 Query: 196 AKLTGLAVTDEAAC--EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT-REIADAALLR 252 G A C IA ++ G R + LL D A+ T E+ A+L R Sbjct: 183 MDELGDAAQASQHCLELIATQADGDARRSINLLELAADLADDGEITEQTLEEVLQASLRR 242 Query: 253 LAIDKMG---FDQL 263 DK G +DQ+ Sbjct: 243 F--DKGGDLFYDQI 254 >gi|77411974|ref|ZP_00788304.1| ATPase, AAA family [Streptococcus agalactiae CJB111] gi|77162000|gb|EAO72981.1| ATPase, AAA family [Streptococcus agalactiae CJB111] Length = 422 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR + E GQ N K+ A L ++ GPPG+GKT++A +A Sbjct: 9 MRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|260773038|ref|ZP_05881954.1| ATPase AAA family [Vibrio metschnikovii CIP 69.14] gi|260612177|gb|EEX37380.1| ATPase AAA family [Vibrio metschnikovii CIP 69.14] Length = 449 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 9/147 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A L ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTIEQYIGQQHILGQDKPLRRALQA--GHLHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S I A D A + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSAVTSGVKEIRAAIDRARENQRVGRRTILFVDEVHRFNKSQQDAFLPYIEDGTVTF 138 Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165 >gi|319746115|gb|EFV98389.1| AAA family ATPase [Streptococcus agalactiae ATCC 13813] Length = 422 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR + E GQ N K+ A L ++ GPPG+GKT++A +A Sbjct: 9 MRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|300871012|ref|YP_003785884.1| Holliday junction resolvase-like ATPase [Brachyspira pilosicoli 95/1000] gi|300688712|gb|ADK31383.1| helicase subunit of the Holliday junction resolvase-like ATPase [Brachyspira pilosicoli 95/1000] Length = 433 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE---- 77 +RP ++EE GQ S K + + + ++F GPPG+GK+T+A ++A++ Sbjct: 18 MRPTSIEEVYGQKHILSENKTLRKMIDK--DKITSMVFFGPPGVGKSTVASIIAKKTKRE 75 Query: 78 -LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 + +N ++ I +A A + E + +LFIDEIHR + ++ L PA+E+ Sbjct: 76 YVKLNAVLSNVSEIREAIKKAEKNLSNEKKTILFIDEIHRFNKSQQDALLPAVEN 130 >gi|329767245|ref|ZP_08258772.1| hypothetical protein HMPREF0428_00469 [Gemella haemolysans M341] gi|328836912|gb|EGF86559.1| hypothetical protein HMPREF0428_00469 [Gemella haemolysans M341] Length = 415 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 5/114 (4%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I+ LRP + + GQ + KV + +++ + +L+ GPPG GKT++A +A EL Sbjct: 5 INKLRPNKISDIIGQHHLIGDGKVLTKIVESK-KMFSFILY-GPPGTGKTSIANALANEL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAME 130 F+ + V DL A++ + + +L +DE HRL+ +++IL P +E Sbjct: 63 DYKFKILNA-VNCTKKDLTAVIEESKRFKKVILLLDEFHRLTKPMQDILLPEIE 115 >gi|269216091|ref|ZP_06159945.1| replication-associated recombination protein A [Slackia exigua ATCC 700122] gi|269130350|gb|EEZ61428.1| replication-associated recombination protein A [Slackia exigua ATCC 700122] Length = 443 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 23/208 (11%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RPR+L E GQ +A S L + I A +AL V+ GP G GKT++A+++A Sbjct: 23 MRPRSLSELRGQKDAVGPGSWLALAITA-----DALSSVILFGPAGTGKTSIARIIAETT 77 Query: 76 RELGVNFRSTSGPVIAKAGDLAAL---LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 R V + G V +++A L + + +LF+DEIHR S ++ L A+E+ Sbjct: 78 RSAFVEVSAIGGTVADLRREISAAERRLASAGTKTILFVDEIHRFSRSQQDALLHAVEN- 136 Query: 133 QLDLMVG---EGP--SARSVKINLSRFTLIAATTR---VGLLTNPLQDRFGIPIRLNFYE 184 ++ ++VG E P S I+ SR + A + +L L D G+ R F + Sbjct: 137 RVVILVGATTENPFFEVNSALISRSRIVELHALSDADIASILDAALADERGLRGRFAFAD 196 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIA 212 + G G T E A ++A Sbjct: 197 GAARAIVDLSGGDARGALTTLELASQLA 224 >gi|254523765|ref|ZP_05135820.1| ATPase [Stenotrophomonas sp. SKA14] gi|219721356|gb|EED39881.1| ATPase [Stenotrophomonas sp. SKA14] Length = 425 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 1 MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAEYS 55 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ S P + + AA R VLF+DE+HR + ++ P +E Sbjct: 56 DAEFRAISAVLSGLPEVRQVLAEAAQRFAEGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 115 Query: 134 LDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 116 I-LFVGATTENPSFELN 131 >gi|167972549|ref|ZP_02554826.1| ATPase, AAA family [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167988394|ref|ZP_02570065.1| ATPase, AAA family [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|195867731|ref|ZP_03079732.1| ATPase, AAA family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225551136|ref|ZP_03772082.1| ATPase, AAA family [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209307|gb|EDU06350.1| ATPase, AAA family [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018837|gb|EDU56877.1| ATPase, AAA family [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|195660586|gb|EDX53842.1| ATPase, AAA family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225378951|gb|EEH01316.1| ATPase, AAA family [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 408 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 5/120 (4%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +L P ++++ GQ + + + + + +++F GPPG+GK++LA+V+A++L Sbjct: 8 TLKNPHSIDDIVGQKDLLDEIGIIRKMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLK 65 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 V F + PV+ L ++ D + ++ IDEIHRL+ ++IL P +E ++ L Sbjct: 66 VPF-AFFNPVVDSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLF 124 >gi|88860147|ref|ZP_01134786.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Pseudoalteromonas tunicata D2] gi|88818141|gb|EAR27957.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Pseudoalteromonas tunicata D2] Length = 446 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 35/242 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L E+ GQ + K +A + ++ GPPG GKTTLAQ++A Sbjct: 19 MRPNVLAEYCGQQHLLAQDKPLYQAI--LSGHCHSMILWGPPGTGKTTLAQLIAHHATAQ 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V A ++ + ++ R +LF+DE+HR + ++ P +ED Sbjct: 77 FIQLSA-VTAGVKEIRESVQQAKNSLQHGQRTLLFVDEVHRFNKSQQDAFLPHIEDGTF- 134 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 L VG S +N I + TRV +L + D DL ++ R Sbjct: 135 LFVGATTENPSFALN----NAILSRTRVYVLKSLTDD--------------DLLQVINRA 176 Query: 196 ----AKLTGLAVT--DEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTITREIADA 248 L+ L ++ ++A + ++G R A LL + D A+ +A K I ++ + Sbjct: 177 LIQDPILSTLQISMDEKAKGALCAAAQGDARKALNLLEQSVDLAQSIAGKKVIDSQVLEH 236 Query: 249 AL 250 L Sbjct: 237 VL 238 >gi|332678703|gb|AEE87832.1| ATPase, AAA family [Francisella cf. novicida Fx1] Length = 412 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++++E GQ S + + + + ++ G PG+GKT+LA+++A + Sbjct: 10 IRPQSIDEIVGQEHLLSQHGILTKILAG--DGICSLVLCGKPGVGKTSLARIIASSKKLE 67 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137 F S V + D+ L+T+ + D VLF+DEIHR + +++L P +E ++ L+ Sbjct: 68 FFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDLLLPYVESGKIILIGA 126 Query: 138 VGEGPS--------ARSVKINLSRFTLIA 158 E P+ +R + L R +L+A Sbjct: 127 TTENPTYYLNDALVSRLFILRLKRLSLVA 155 >gi|281490561|ref|YP_003352541.1| chromosome segregation helicase [Lactococcus lactis subsp. lactis KF147] gi|281374379|gb|ADA63912.1| Chromosome segregation helicase, ATPase, AAA family [Lactococcus lactis subsp. lactis KF147] Length = 419 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR ++E GQ K+ + + L ++ GPPG+GKT++A +A + V Sbjct: 9 MRPRNIDEIVGQKHLVGKGKIIRRMVET--QLLSSMILYGPPGIGKTSIASAIAGTMNVA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + IA + + L VL +DEIHRL ++ L P +E+ Q Sbjct: 67 FRTFNATTDTKKRLQEIASEAEFSGQL-------VLLLDEIHRLDKPKQDFLLPLLENGQ 119 Query: 134 LDLM 137 + L+ Sbjct: 120 IILI 123 >gi|229135222|ref|ZP_04264021.1| hypothetical protein bcere0014_41240 [Bacillus cereus BDRD-ST196] gi|229169142|ref|ZP_04296857.1| hypothetical protein bcere0007_40940 [Bacillus cereus AH621] gi|228614370|gb|EEK71480.1| hypothetical protein bcere0007_40940 [Bacillus cereus AH621] gi|228648264|gb|EEL04300.1| hypothetical protein bcere0014_41240 [Bacillus cereus BDRD-ST196] Length = 428 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 86/330 (26%), Positives = 130/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTL 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VTDEA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAVEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|209554055|ref|YP_002284591.1| recombination factor protein RarA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550599|ref|ZP_03771548.1| ATPase, AAA family [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|209541556|gb|ACI59785.1| ATPase, AAA family [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379753|gb|EEH02115.1| ATPase, AAA family [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 408 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 5/120 (4%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +L P ++++ GQ + + + + + +++F GPPG+GK++LA+V+A++L Sbjct: 8 TLKNPHSIDDIVGQKDLLDEIGIIRKMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLK 65 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 V F + PV+ L ++ D + ++ IDEIHRL+ ++IL P +E ++ L Sbjct: 66 VPF-AFFNPVVDSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLF 124 >gi|227549178|ref|ZP_03979227.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium lipophiloflavum DSM 44291] gi|227078738|gb|EEI16701.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium lipophiloflavum DSM 44291] Length = 449 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 23/136 (16%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP++L + GQ L+ +E + A + V+ GPPG GKTT+A ++A + Sbjct: 35 MRPQSLSDVVGQDHVLGEGKPLRRLVEGSGAAS-----VILYGPPGTGKTTIASLIASTM 89 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 G NF S VIA+A LT E + VLFIDE+HR S ++ L A+ Sbjct: 90 GQNFVGLSALSSGVKDVREVIAQA---RRDLTRGE-KTVLFIDEVHRFSKTQQDALLAAV 145 Query: 130 EDFQLDLMVG--EGPS 143 E+ + L+ E PS Sbjct: 146 ENRTVLLVAATTENPS 161 >gi|114605198|ref|XP_518204.2| PREDICTED: Werner helicase interacting protein isoform 4 [Pan troglodytes] Length = 576 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ +A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375 >gi|59801120|ref|YP_207832.1| recombination factor protein RarA [Neisseria gonorrhoeae FA 1090] gi|194098765|ref|YP_002001827.1| recombination factor protein RarA [Neisseria gonorrhoeae NCCP11945] gi|239999059|ref|ZP_04718983.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02] gi|240014030|ref|ZP_04720943.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI18] gi|240016470|ref|ZP_04723010.1| recombination factor protein RarA [Neisseria gonorrhoeae FA6140] gi|240080592|ref|ZP_04725135.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19] gi|240113038|ref|ZP_04727528.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11] gi|240115795|ref|ZP_04729857.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18] gi|240118091|ref|ZP_04732153.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1] gi|240121596|ref|ZP_04734558.1| recombination factor protein RarA [Neisseria gonorrhoeae PID24-1] gi|240123645|ref|ZP_04736601.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332] gi|240125829|ref|ZP_04738715.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679] gi|240128343|ref|ZP_04741004.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-93-1035] gi|254493843|ref|ZP_05107014.1| recombination factor protein RarA [Neisseria gonorrhoeae 1291] gi|260440387|ref|ZP_05794203.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2] gi|268594903|ref|ZP_06129070.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02] gi|268596717|ref|ZP_06130884.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19] gi|268599122|ref|ZP_06133289.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11] gi|268601473|ref|ZP_06135640.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18] gi|268603806|ref|ZP_06137973.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1] gi|268682274|ref|ZP_06149136.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332] gi|268684428|ref|ZP_06151290.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679] gi|268686740|ref|ZP_06153602.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-93-1035] gi|291043684|ref|ZP_06569400.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2] gi|293398982|ref|ZP_06643147.1| ATPase [Neisseria gonorrhoeae F62] gi|59718015|gb|AAW89420.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193934055|gb|ACF29879.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226512883|gb|EEH62228.1| recombination factor protein RarA [Neisseria gonorrhoeae 1291] gi|268548292|gb|EEZ43710.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02] gi|268550505|gb|EEZ45524.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19] gi|268583253|gb|EEZ47929.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11] gi|268585604|gb|EEZ50280.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18] gi|268587937|gb|EEZ52613.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1] gi|268622558|gb|EEZ54958.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332] gi|268624712|gb|EEZ57112.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679] gi|268627024|gb|EEZ59424.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-93-1035] gi|291012147|gb|EFE04136.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2] gi|291610396|gb|EFF39506.1| ATPase [Neisseria gonorrhoeae F62] gi|317164351|gb|ADV07892.1| recombination factor protein RarA [Neisseria gonorrhoeae TCDC-NG08107] Length = 436 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V + D+ + E +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESG 130 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153 >gi|300811355|ref|ZP_07091852.1| recombination factor protein RarA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497719|gb|EFK32744.1| recombination factor protein RarA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 430 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+++++ GQ K+ +AR L ++ GPPG+GKT++A +A Sbjct: 8 MRPQSIDQVVGQQHLVGPKKIIRRMVEARQ--LSSMILYGPPGIGKTSIASAIAGSSKYA 65 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR + +A G ++ + VL +DEIHRL+ + ++ L P +E Q Sbjct: 66 FRQLNAATDGQKELSQVAAEGKMSGTV-------VLLLDEIHRLNKVKQDFLLPLLESGQ 118 Query: 134 LDLMVG 139 + +M+G Sbjct: 119 V-IMIG 123 >gi|193787734|dbj|BAG52937.1| unnamed protein product [Homo sapiens] Length = 614 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ +A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375 >gi|189501780|ref|YP_001957497.1| hypothetical protein Aasi_0336 [Candidatus Amoebophilus asiaticus 5a2] gi|189497221|gb|ACE05768.1| hypothetical protein Aasi_0336 [Candidatus Amoebophilus asiaticus 5a2] Length = 431 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 18/153 (11%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPP 63 L S+N + A S LRP++L E GQ E L V ++ + L ++ GPP Sbjct: 4 LFSQNSYEPLA--SRLRPQSLNEIVGQEHLTEGKGPLGVMRKSGQ-----LSSLILWGPP 56 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRL 117 G GKTTLA+++A+ + F S + + DL + ++R +LF+DEIHR Sbjct: 57 GCGKTTLARLLAKTSDLEFEPISA-IESGVADLKKVFERAQERKKMGRGTLLFVDEIHRF 115 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 + ++ P +E+ + +++G S ++N Sbjct: 116 NRTQQDSFLPHVENGTV-ILIGATTENPSFELN 147 >gi|313668375|ref|YP_004048659.1| AAA ATPase [Neisseria lactamica ST-640] gi|313005837|emb|CBN87292.1| putative AAA ATPase [Neisseria lactamica 020-06] Length = 436 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130 F S V + D+ + E +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVE 128 >gi|227552635|ref|ZP_03982684.1| crossover junction endodeoxyribonuclease [Enterococcus faecium TX1330] gi|227178261|gb|EEI59233.1| crossover junction endodeoxyribonuclease [Enterococcus faecium TX1330] Length = 459 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E GQ K+ AR L ++ GPPG GKT++A +A Sbjct: 40 MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 97 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DE+HRL ++ L P +E ++ +++G Sbjct: 98 FRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 156 Query: 141 GPSARSVKIN 150 + IN Sbjct: 157 TTENPYITIN 166 >gi|170698492|ref|ZP_02889563.1| AAA ATPase central domain protein [Burkholderia ambifaria IOP40-10] gi|170136576|gb|EDT04833.1| AAA ATPase central domain protein [Burkholderia ambifaria IOP40-10] Length = 436 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 111/257 (43%), Gaps = 38/257 (14%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + +D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + LN E+ L Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLQS-----------LNDDEMRQLLKR 174 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 Q A L GLA D+A + + G R LL + + A + TI E +A+ Sbjct: 175 AQEIA-LDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAASSSRITTIDAEFVSSAMT 233 Query: 252 RLA--IDKMG---FDQL 263 A DK G +DQ+ Sbjct: 234 LNARRFDKGGDNFYDQI 250 >gi|146311073|ref|YP_001176147.1| recombination factor protein RarA [Enterobacter sp. 638] gi|145317949|gb|ABP60096.1| Recombination protein MgsA [Enterobacter sp. 638] Length = 447 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + K A +A L ++ GPPG GKTTLA+V+AR + Sbjct: 20 MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYADAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 78 VERLSAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|62089026|dbj|BAD92960.1| Werner helicase interacting protein isoform 1 variant [Homo sapiens] Length = 646 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ +A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 212 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 266 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 267 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 325 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 326 VECGTITLIGATTENPSFQVNAALLSRCRVI 356 >gi|15672079|ref|NP_266253.1| recombination factor protein RarA [Lactococcus lactis subsp. lactis Il1403] gi|12722942|gb|AAK04195.1|AE006248_3 chromosome segregation helicase [Lactococcus lactis subsp. lactis Il1403] Length = 419 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR ++E GQ K+ + + L ++ GPPG+GKT++A +A + V Sbjct: 9 MRPRNIDEIVGQKHLVGKGKIIRRMVET--QLLSSMILYGPPGIGKTSIASAIAGTMNVA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + IA + + L VL +DEIHRL ++ L P +E+ Q Sbjct: 67 FRTFNATTDTKKRLQEIASEAEFSGQL-------VLLLDEIHRLDKPKQDFLLPLLENGQ 119 Query: 134 LDLM 137 + L+ Sbjct: 120 IILI 123 >gi|88798710|ref|ZP_01114293.1| hypothetical protein MED297_15939 [Reinekea sp. MED297] gi|88778473|gb|EAR09665.1| hypothetical protein MED297_15939 [Reinekea sp. MED297] Length = 439 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 14/160 (8%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +LRP+TL ++ GQ K + + R L ++F GPPG+GKTTLA V++ + Sbjct: 17 VLRPQTLTDYIGQQHILGPGKPLRQTLENRN--LHSMIFWGPPGVGKTTLANVISNTVEA 74 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V A D+ + + VLF+DE+HR + ++ P +E+ Sbjct: 75 RFEVLSA-VQAGVKDIKLVAEKAKQAQAYGEVTVLFVDEVHRFNKAQQDAFLPYVENGTF 133 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174 + +G S ++N + + + RV +L + D F Sbjct: 134 -IFIGATTENPSFELN----SALLSRARVYVLKSFTDDDF 168 >gi|298387659|ref|ZP_06997210.1| ATPase, AAA family [Bacteroides sp. 1_1_14] gi|298259515|gb|EFI02388.1| ATPase, AAA family [Bacteroides sp. 1_1_14] Length = 106 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 16/105 (15%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+++ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 8 LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHR 116 F + S V + D+ ++ + +LFIDEIHR Sbjct: 63 ETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHR 106 >gi|226366324|ref|YP_002784107.1| recombination factor protein RarA [Rhodococcus opacus B4] gi|226244814|dbj|BAH55162.1| putative AAA family ATPase [Rhodococcus opacus B4] Length = 477 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 23/146 (15%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E GQ + + L+ +E + A + VL GPPG GKTTLA +++ Sbjct: 48 MRPRTLGEVVGQQHLLGPGAPLRRLVEGSGAAS-----VLLYGPPGTGKTTLASLISGAT 102 Query: 79 GVNFRSTSGPVIAKAG--------DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 G F + S AG +LA ++ VLFIDE+HR S ++ L A+E Sbjct: 103 GRRFEALSA---LSAGVKEVRGVIELARRRLLAGEQTVLFIDEVHRFSKTQQDALLAAVE 159 Query: 131 DFQLDLMVG---EGPSARSVKINLSR 153 + ++ L+V E PS V LSR Sbjct: 160 N-RIVLLVAATTENPSFSVVSPLLSR 184 >gi|315503209|ref|YP_004082096.1| aaa atpase central domain protein [Micromonospora sp. L5] gi|315409828|gb|ADU07945.1| AAA ATPase central domain protein [Micromonospora sp. L5] Length = 496 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP ++E GQ + + L+ +E A + V+ GPPG GKTT+A +VAR Sbjct: 38 MRPAGIDELVGQEHLLAPGAPLRQLVEGAAPMS-----VILWGPPGSGKTTIAHLVARAT 92 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S + A D+ A++ + VLFIDE+HR S ++ L A+ED Sbjct: 93 DRRFVAMSA-LTAGVKDVRAVIETARRQRRSGGPPTVLFIDEVHRFSKTQQDSLLAAVED 151 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E P + LSR L+ Sbjct: 152 RTVTLLAATTENPYFSVISPLLSRCVLL 179 >gi|205374224|ref|ZP_03227023.1| recombination factor protein RarA [Bacillus coahuilensis m4-4] Length = 177 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKTIDDIIGQQHLVGEGKIIRRMVEAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + K ++ A + + VL +DE+HRL ++ L P +E+ + L+ Sbjct: 68 FRMLNAVTSNKKDMEIVAAEAKMSGKVVLLLDEVHRLDKGKQDFLLPHLENGSITLI 124 >gi|114605200|ref|XP_001159547.1| PREDICTED: ATPase WRNIP1 isoform 2 [Pan troglodytes] Length = 614 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ +A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375 >gi|22538114|ref|NP_688965.1| recombination factor protein RarA [Streptococcus agalactiae 2603V/R] gi|76799348|ref|ZP_00781508.1| ATPase, AAA family [Streptococcus agalactiae 18RS21] gi|22535021|gb|AAN00838.1|AE014281_7 ATPase, AAA family [Streptococcus agalactiae 2603V/R] gi|76585295|gb|EAO61893.1| ATPase, AAA family [Streptococcus agalactiae 18RS21] Length = 422 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR + E GQ N K+ A L ++ GPPG+GKT++A +A Sbjct: 9 MRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|290473946|ref|YP_003466820.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Xenorhabdus bovienii SS-2004] gi|289173253|emb|CBJ80028.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Xenorhabdus bovienii SS-2004] Length = 447 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ + GQ + K A RA L ++ GPPG GKTTLA+++ + Sbjct: 20 MRPVTLDHYIGQQHLLAEGKPLPRAI--RAGHLHSMILWGPPGTGKTTLAEIIGHYAQAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I ++ + A+ N R +LF+DE+HR + ++ P +ED + Sbjct: 78 IERISAVTSGIKEIRESIEKASQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|111024084|ref|YP_707056.1| recombination factor protein RarA [Rhodococcus jostii RHA1] gi|110823614|gb|ABG98898.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Rhodococcus jostii RHA1] Length = 478 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 23/146 (15%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E GQ + + L+ +E + A + VL GPPG GKTTLA +++ Sbjct: 49 MRPRTLGEVVGQQHLLGPGAPLRRLVEGSGAAS-----VLLYGPPGTGKTTLASLISGAT 103 Query: 79 GVNFRSTSGPVIAKAG--------DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 G F + S AG +LA ++ VLFIDE+HR S ++ L A+E Sbjct: 104 GRRFEALSA---LSAGVKEVRGVIELARRRLLAGEQTVLFIDEVHRFSKTQQDALLAAVE 160 Query: 131 DFQLDLMVG---EGPSARSVKINLSR 153 + ++ L+V E PS V LSR Sbjct: 161 N-RIVLLVAATTENPSFSVVSPLLSR 185 >gi|302866794|ref|YP_003835431.1| AAA ATPase central domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302569653|gb|ADL45855.1| AAA ATPase central domain protein [Micromonospora aurantiaca ATCC 27029] Length = 532 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP ++E GQ + + L+ +E A + V+ GPPG GKTT+A +VAR Sbjct: 74 MRPAGIDELVGQEHLLAPGAPLRQLVEGAAPMS-----VILWGPPGSGKTTIAHLVARAT 128 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S + A D+ A++ + VLFIDE+HR S ++ L A+ED Sbjct: 129 DRRFVAMSA-LTAGVKDVRAVIETARRQRRSGGPPTVLFIDEVHRFSKTQQDSLLAAVED 187 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E P + LSR L+ Sbjct: 188 RTVTLLAATTENPYFSVISPLLSRCVLL 215 >gi|260468527|ref|ZP_05813694.1| AAA ATPase central domain protein [Mesorhizobium opportunistum WSM2075] gi|259028683|gb|EEW29992.1| AAA ATPase central domain protein [Mesorhizobium opportunistum WSM2075] Length = 435 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ L E GQ + A R + +L ++F GPPG GKTT+A+++A E Sbjct: 23 LRPKNLGEVVGQEHLTGP-----DGALTRLIGSGSLGSMIFWGPPGTGKTTVARLLAGET 77 Query: 79 GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 + F S V + DL AA L R +LF+DEIHR + ++ P MED Sbjct: 78 SLAFEQISA-VFSGVADLKKVFEAAKLRRANGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 136 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 137 TV-VLVGATTENPSFELN 153 >gi|241760045|ref|ZP_04758143.1| recombination factor protein RarA [Neisseria flavescens SK114] gi|241319499|gb|EER55929.1| recombination factor protein RarA [Neisseria flavescens SK114] Length = 435 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 16/151 (10%) Query: 14 QEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 Q DA ++ LRP +L++ GQ + L+V +E K + +L GPPG+GKTT Sbjct: 8 QPDAPLAERLRPHSLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTT 62 Query: 70 LAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LA+++A+ F S I +A D A + +LF+DE+HR + ++ Sbjct: 63 LARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRTTILFVDEVHRFNKAQQDA 122 Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSR 153 P +E L + E PS LSR Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSR 153 >gi|269792161|ref|YP_003317065.1| AAA ATPase central domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099796|gb|ACZ18783.1| AAA ATPase central domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 421 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 34/196 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E+ GQ L++ I + R+ + GPPG+GKTTL +++A Sbjct: 15 MRPRSLDEYVGQEHLLGEGGPLRLLISSNSLRS-----CILYGPPGVGKTTLVRLMATTT 69 Query: 79 GVNFRSTSGPVIAKAGDLAAL------LTNLE-DRDVLFIDEIHRLSIIVEEILYPAMED 131 G + V +K DL AL LT++ + + F+DEI+ + + +L P +E Sbjct: 70 GRELLEINA-VTSKLSDLRALADRAASLTSMGFEPPIAFVDEIYHFNSQQQNVLLPFVES 128 Query: 132 FQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 Q+ ++VG E P K LSR + PL+DR I + + E D Sbjct: 129 GQM-VLVGTTTENPWFEVNKTLLSRMLVYE--------LKPLEDRHVIQVLVRALEDFD- 178 Query: 189 KTIVQRGAKLTGLAVT 204 RG GL+VT Sbjct: 179 -----RGLGRLGLSVT 189 >gi|167586457|ref|ZP_02378845.1| recombination factor protein RarA [Burkholderia ubonensis Bu] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 113/259 (43%), Gaps = 42/259 (16%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + +D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIREAMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + D +++ + Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLTDD--------------EMRQL 171 Query: 192 VQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 ++R + L GLA D+A + + G R LL + + A A TI + +A Sbjct: 172 LKRAQEIALEGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAATSAGVTTIDADFVSSA 231 Query: 250 LLRLA--IDKMG---FDQL 263 + A DK G +DQ+ Sbjct: 232 MTLNARRFDKGGDNFYDQI 250 >gi|62898918|dbj|BAD97313.1| Werner helicase interacting protein isoform 1 variant [Homo sapiens] Length = 665 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ +A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375 >gi|119383540|ref|YP_914596.1| recombination factor protein RarA [Paracoccus denitrificans PD1222] gi|119373307|gb|ABL68900.1| Recombination protein MgsA [Paracoccus denitrificans PD1222] Length = 442 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 8/122 (6%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLED 105 A +L ++ GPPG+GKTT+A+++A+E + F S P + K D A L Sbjct: 53 AGSLSSLILWGPPGVGKTTIARLLAQETDLAFVQISAIFSGVPELRKVFDAARLRGQQGR 112 Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163 +LF+DEIHR + ++ P MED + L+ E PS LSR +I R+ Sbjct: 113 GTLLFVDEIHRFNKAQQDSFLPHMEDGTITLVGATTENPSFELNAALLSRAQVI-VLERL 171 Query: 164 GL 165 GL Sbjct: 172 GL 173 >gi|312384050|gb|EFR28872.1| hypothetical protein AND_02653 [Anopheles darlingi] Length = 580 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 20/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +E++ GQ + L+ ++ ++ ++ GPPG GKTTLA ++A Sbjct: 162 VRPDNIEDYVGQEQVMGRNAILRKLFDSG-----SIPSMILWGPPGCGKTTLAHIIANRC 216 Query: 79 GVNFRS--------TSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 N S TS V + +A +A + + R +LF+DEIHR + + ++I P Sbjct: 217 KQNSNSMRFVSLSATSAGVNDVKEAVKVAKNESRFKRRTILFLDEIHRFNKLQQDIFLPH 276 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS LSR +I Sbjct: 277 VESGTITLIGATTENPSFSLNSALLSRCRVI 307 >gi|239625342|ref|ZP_04668373.1| AAA ATPase central domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239519572|gb|EEQ59438.1| AAA ATPase central domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 442 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 22/156 (14%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S LRP L+ F GQ K+ IE K + ++F GPPG+GKTTLA ++A Sbjct: 18 SRLRPDDLDGFVGQEHLLGKGKILRQLIEQDK-----IPSMIFWGPPGVGKTTLAGIIAH 72 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 + F + S V + ++ ++ E+ + V+F+DEIHR + ++ P +E Sbjct: 73 KTHAEFINFSA-VTSGIKEIKEVMAQAENSRRMGIKTVVFVDEIHRFNKAQQDAFLPYVE 131 Query: 131 DFQLDLMVGEGPSARSVKIN---LSR---FTLIAAT 160 + +++G S +IN LSR F L A T Sbjct: 132 KGSI-ILIGATTENPSFEINGALLSRCRVFVLQALT 166 >gi|18426902|ref|NP_064520.2| ATPase WRNIP1 isoform 1 [Homo sapiens] gi|73622085|sp|Q96S55|WRIP1_HUMAN RecName: Full=ATPase WRNIP1; AltName: Full=Werner helicase-interacting protein 1 gi|55661735|emb|CAH73664.1| Werner helicase interacting protein 1 [Homo sapiens] gi|119575489|gb|EAW55085.1| Werner helicase interacting protein 1, isoform CRA_a [Homo sapiens] Length = 665 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ +A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375 >gi|257784257|ref|YP_003179474.1| AAA ATPase central domain-containing protein [Atopobium parvulum DSM 20469] gi|257472764|gb|ACV50883.1| AAA ATPase central domain protein [Atopobium parvulum DSM 20469] Length = 443 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+ + GQ +A S L+ IE + L VL GP G GKTTLA+++A Sbjct: 23 MRPTTLDGYVGQEDAVGPGSWLRKAIEH-----DTLSSVLLYGPAGTGKTTLARIIAHTT 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F S + DL + E R +LFIDEIHR + ++ L A+ED Sbjct: 78 HAEFVEVSA-ITGTVKDLRREIEAAESRLLTAGRRTILFIDEIHRFTRSQQDALLHAVED 136 >gi|331004982|ref|ZP_08328392.1| putative ATPase associated with chromosome architecture [gamma proteobacterium IMCC1989] gi|330421224|gb|EGG95480.1| putative ATPase associated with chromosome architecture [gamma proteobacterium IMCC1989] Length = 466 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 12/131 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+T++++ GQ + K EA + L ++ GPPG+GKT+LA+++A + Sbjct: 35 LRPQTIQDYIGQQHLLAEGKPLREAIEK--GQLHSMILWGPPGVGKTSLARMLAHLIDAE 92 Query: 82 FRSTSGPVIAKAGDL-----AALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 + S S V+A D+ A LT R +LF+DE+HR + ++ P +E+ + Sbjct: 93 YTSLSA-VLAGVKDIRQAVATAQLTQQTSGRRTLLFVDEVHRFNKAQQDAFLPYVENGTI 151 Query: 135 DLM--VGEGPS 143 + E PS Sbjct: 152 TFIGATTENPS 162 >gi|329120562|ref|ZP_08249225.1| replication-associated recombination protein A [Neisseria bacilliformis ATCC BAA-1200] gi|327460786|gb|EGF07120.1| replication-associated recombination protein A [Neisseria bacilliformis ATCC BAA-1200] Length = 456 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 16/151 (10%) Query: 14 QEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 Q DA ++ LRP TL + GQ + L+V +E K + +L GPPG+GKTT Sbjct: 27 QPDAPLAERLRPHTLADVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTT 81 Query: 70 LAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 LA+++A+ F S I +A D A + +LF+DE+HR + ++ Sbjct: 82 LARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRGTILFVDEVHRFNKAQQDA 141 Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSR 153 P +E L + E PS LSR Sbjct: 142 FLPHVESGLLTFIGATTENPSFEVNPALLSR 172 >gi|260913897|ref|ZP_05920371.1| replication-associated recombination protein A [Pasteurella dagmatis ATCC 43325] gi|260631984|gb|EEX50161.1| replication-associated recombination protein A [Pasteurella dagmatis ATCC 43325] Length = 446 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL ++ GQ K +A + + ++F GPPG GKTTLA+++A+ + Sbjct: 20 MRPTTLAQYYGQSHLIGEGKPLRKAIEVGH--IHSMIFWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSGPVIAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMED 131 TSG + A L D R +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGVKEIREAIERAKQNRLSDRRTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|210633878|ref|ZP_03297893.1| hypothetical protein COLSTE_01810 [Collinsella stercoris DSM 13279] gi|210159047|gb|EEA90018.1| hypothetical protein COLSTE_01810 [Collinsella stercoris DSM 13279] Length = 446 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 17/128 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+++ GQ +A S L+ IE + L V+ GP G GKTTLA ++A Sbjct: 28 MRPSSLDDYVGQEKAVGPGSWLRSAIEH-----DVLSSVILYGPAGTGKTTLAHIIAAHT 82 Query: 79 GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S V DL L + R +LFIDEIHR S ++ L A+E+ Sbjct: 83 KSEFVEVSA-VTGTVKDLRREIDEAKHRLMMFDRRTILFIDEIHRFSRSQQDALLHAVEN 141 Query: 132 FQLDLMVG 139 + +M+G Sbjct: 142 RTV-VMIG 148 >gi|19552845|ref|NP_600847.1| recombination factor protein RarA [Corynebacterium glutamicum ATCC 13032] gi|21324402|dbj|BAB99026.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Corynebacterium glutamicum ATCC 13032] Length = 459 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ L+ IE + + V+ GPPG GKTT+A +++ Sbjct: 44 MRPRTLDEVVGQQHLLGEGRPLRRLIEGSGDAS-----VILYGPPGTGKTTIASLISAAA 98 Query: 79 GVNFRS----TSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 G F + +SG +A + A + L R VLFIDE+HR S ++ L A+E+ Sbjct: 99 GDRFVAMSALSSGVKEVRAVIERARMDLQLGQRTVLFIDEVHRFSKTQQDALLSAVENRT 158 Query: 134 LDLMVG--EGPS 143 + L+ E PS Sbjct: 159 VLLVAATTENPS 170 >gi|114605194|ref|XP_001159632.1| PREDICTED: ATPase WRNIP1 isoform 3 [Pan troglodytes] Length = 665 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ +A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375 >gi|13470578|ref|NP_102147.1| recombination factor protein RarA [Mesorhizobium loti MAFF303099] gi|14021320|dbj|BAB47933.1| mlr0329 [Mesorhizobium loti MAFF303099] Length = 435 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ L E GQ + A R + +L ++F GPPG GKTT+A+++A E Sbjct: 23 LRPKNLGEVVGQEHLTGP-----DGALTRLIGSGSLGSMIFWGPPGTGKTTVARLLAGET 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 + F S V + DL + + R +LF+DEIHR + ++ P MED Sbjct: 78 SLAFEQISA-VFSGVADLKKVFETAKLRRANGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 136 Query: 133 QLDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 137 TV-VLVGATTENPSFELN 153 >gi|227892661|ref|ZP_04010466.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis DSM 16047] gi|227865532|gb|EEJ72953.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis DSM 16047] Length = 438 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ +AR L ++ GPPG+GKT++A +A Sbjct: 8 MRPKNLDEVVGQQHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR + +A+ G ++ + VL +DEIHRL ++ L P +E Q Sbjct: 66 FRKLNAATDGKKQLQQVAEEGKMSGTV-------VLLLDEIHRLDKTKQDFLLPLLESGQ 118 Query: 134 LDLM 137 + L+ Sbjct: 119 IILI 122 >gi|110804893|ref|YP_688413.1| recombination factor protein RarA [Shigella flexneri 5 str. 8401] gi|110614441|gb|ABF03108.1| putative polynucleotide enzyme [Shigella flexneri 5 str. 8401] Length = 447 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNRNAGRRTSLFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|315498196|ref|YP_004087000.1| aaa atpase central domain protein [Asticcacaulis excentricus CB 48] gi|315416208|gb|ADU12849.1| AAA ATPase central domain protein [Asticcacaulis excentricus CB 48] Length = 451 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 19/120 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVAR 76 LRP+TL E GQ + A A A+D ++ GPPG+GKTT+A+++A Sbjct: 35 LRPQTLSEIVGQDH-------LLGEGGAIARAIDRGFLPSLILWGPPGVGKTTIARLLAA 87 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 +G F+ S V + DL + R VLF+DEIHR + ++ P +E Sbjct: 88 SVGYEFQQISA-VFSGVADLKKAFEYAQARRTQGVRSVLFVDEIHRFNRAQQDSFLPYVE 146 >gi|293603799|ref|ZP_06686215.1| replication-associated recombination protein A [Achromobacter piechaudii ATCC 43553] gi|292817797|gb|EFF76862.1| replication-associated recombination protein A [Achromobacter piechaudii ATCC 43553] Length = 446 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/254 (25%), Positives = 108/254 (42%), Gaps = 49/254 (19%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR+L + GQ L+V E+ + + ++F GPPG+GKTTLA+++A Sbjct: 22 LRPRSLSDVVGQSHLLGPDKPLRVAFESGRPHS-----MIFWGPPGVGKTTLARLMADGF 76 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S + I +A +A + R +LF+DE+HR + ++ P +E Sbjct: 77 DAQFIAISAVLGGVKDIREAVTVAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVES-- 134 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLL--TNPLQDRFGIPIRLNFYEIEDLKTI 191 FT I ATT + L R + + L E+L+ + Sbjct: 135 ------------------GLFTFIGATTENPSFEVNSALLSRARVYV-LQSLSTEELQQL 175 Query: 192 VQRGAKL--------TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 V R + + +A ++A + G R RL+ V AE A++ R Sbjct: 176 VDRAVHALNEGMDEGEAIRIEPDAREQLAAWADGDAR---RLISAVEVVAE--SAQSAGR 230 Query: 244 EIADAALLRLAIDK 257 + DAA L +++ + Sbjct: 231 DTVDAAWLEISLSQ 244 >gi|62390516|ref|YP_225918.1| recombination factor protein RarA [Corynebacterium glutamicum ATCC 13032] gi|145295755|ref|YP_001138576.1| recombination factor protein RarA [Corynebacterium glutamicum R] gi|41325853|emb|CAF21642.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Corynebacterium glutamicum ATCC 13032] gi|140845675|dbj|BAF54674.1| hypothetical protein [Corynebacterium glutamicum R] Length = 472 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ L+ IE + + V+ GPPG GKTT+A +++ Sbjct: 57 MRPRTLDEVVGQQHLLGEGRPLRRLIEGSGDAS-----VILYGPPGTGKTTIASLISAAA 111 Query: 79 GVNFRS----TSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 G F + +SG +A + A + L R VLFIDE+HR S ++ L A+E+ Sbjct: 112 GDRFVAMSALSSGVKEVRAVIERARMDLQLGQRTVLFIDEVHRFSKTQQDALLSAVENRT 171 Query: 134 LDLMVG--EGPS 143 + L+ E PS Sbjct: 172 VLLVAATTENPS 183 >gi|163855896|ref|YP_001630194.1| recombination factor protein RarA [Bordetella petrii DSM 12804] gi|163259624|emb|CAP41925.1| conserved hypothetical protein [Bordetella petrii] Length = 446 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL E GQ L+V ++ + + ++F GPPG+GKTTLA+++A Sbjct: 22 LRPRTLSEVVGQSHLLGPDKPLRVAFDSGRPHS-----MIFWGPPGVGKTTLARLMADGF 76 Query: 79 GVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED- 131 F + S V+ D+ A + R +LF+DE+HR + ++ P +E Sbjct: 77 DAQFIAISA-VLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVESG 135 Query: 132 -FQLDLMVGEGPSARSVKINLSR 153 F E PS LSR Sbjct: 136 LFTFIGATTENPSFEVNSALLSR 158 >gi|15221721|ref|NP_173839.1| AAA-type ATPase family protein [Arabidopsis thaliana] gi|2829884|gb|AAC00592.1| Hypothetical protein [Arabidopsis thaliana] gi|332192391|gb|AEE30512.1| AAA-type ATPase-like protein [Arabidopsis thaliana] Length = 525 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 38/188 (20%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 R L S + Q +RPRTL++ GQ S + A ++ L ++F GPP Sbjct: 89 RHKLSSSSHRQHQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVES--NRLPSIVFWGPP 146 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-----------------R 106 G GKT++A+ + S+ P + + L+A+ + ++D R Sbjct: 147 GTGKTSIAKSL-------INSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKR 199 Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRV 163 VLF+DE+HR + ++ P +ED + L +G E PS + LSR RV Sbjct: 200 TVLFMDEVHRFNKSQQDTFLPVIEDGSI-LFIGATTENPSFHLITPLLSR-------CRV 251 Query: 164 GLLTNPLQ 171 L NPL+ Sbjct: 252 -LTLNPLK 258 >gi|27229310|ref|NP_758835.1| ATPase WRNIP1 [Rattus norvegicus] gi|73920471|sp|Q8CG07|WRIP1_RAT RecName: Full=ATPase WRNIP1; AltName: Full=Werner helicase-interacting protein 1 gi|25989624|gb|AAN15750.1| Werner syndrome-interacting protein-like protein [Rattus norvegicus] gi|68534260|gb|AAH98652.1| Werner helicase interacting protein 1 [Rattus norvegicus] gi|149045258|gb|EDL98344.1| Werner helicase interacting protein 1, isoform CRA_b [Rattus norvegicus] Length = 660 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 280 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 339 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 340 VECGTITLIGATTENPSFQVNTALLSRCRVI 370 >gi|326798773|ref|YP_004316592.1| ATPase AAA [Sphingobacterium sp. 21] gi|326549537|gb|ADZ77922.1| AAA ATPase central domain protein [Sphingobacterium sp. 21] Length = 426 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 16/143 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + ++ GQ V + ++ L ++ GPPG+GKTTLA ++++ L Sbjct: 11 MRPENINDYVGQYHLLGPDAVLRRSIESNN--LPSMILWGPPGVGKTTLAYIISKRLNRP 68 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VI +A A+ +D+ +LFIDEIHR S ++ L A+E Sbjct: 69 FFNLSAINAGVKDVREVIEQANLSKAM---FQDQPILFIDEIHRFSKSQQDSLLSAVERG 125 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 126 LVTLIGATTENPSFEVISALLSR 148 >gi|78186607|ref|YP_374650.1| recombination factor protein RarA [Chlorobium luteolum DSM 273] gi|78166509|gb|ABB23607.1| Recombination protein MgsA [Chlorobium luteolum DSM 273] Length = 457 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP++++E GQ V L+ F+ + L ++F GPPG GKTTLA++ A L Sbjct: 31 VRPQSIDEMAGQEHLVGPMGPLRRFLGGGQ-----LPSMIFWGPPGSGKTTLAEICASAL 85 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S + + D+ +L N R +LFIDEIHR + ++ L A+E Sbjct: 86 DFRFEQLSA-IESGVKDVRRVLENAASSRARGIRTLLFIDEIHRFNKSQQDTLLHAIEQ- 143 Query: 133 QLDLMVGEGPSARSVKIN 150 + +++G S +IN Sbjct: 144 GVVVLIGATTENPSFEIN 161 >gi|26451436|dbj|BAC42817.1| unknown protein [Arabidopsis thaliana] Length = 525 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 38/188 (20%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 R L S + Q +RPRTL++ GQ S + A ++ L ++F GPP Sbjct: 89 RHKLSSSSHRQHQPLSERMRPRTLDDVAGQDHLLSPSSLLRSAVES--NRLPSIVFWGPP 146 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-----------------R 106 G GKT++A+ + S+ P + + L+A+ + ++D R Sbjct: 147 GTGKTSIAKSL-------INSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKR 199 Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRV 163 VLF+DE+HR + ++ P +ED + L +G E PS + LSR RV Sbjct: 200 TVLFMDEVHRFNKSQQDTFLPVIEDGSI-LFIGATTENPSFHLITPLLSR-------CRV 251 Query: 164 GLLTNPLQ 171 L NPL+ Sbjct: 252 -LTLNPLK 258 >gi|326405680|gb|ADZ62751.1| chromosome segregation helicase [Lactococcus lactis subsp. lactis CV56] Length = 419 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR ++E GQ K+ + + L ++ GPPG+GKT++A +A + V Sbjct: 9 MRPRNIDEIVGQKHLVGKGKIIRRMVET--QLLSSMILYGPPGIGKTSIASAIAGTMNVA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + IA + + L VL +DEIHRL ++ L P +E+ Q Sbjct: 67 FRTFNATTDTKKRLQEIASEAEFSGQL-------VLLLDEIHRLDKPKQDFLLPLLENGQ 119 Query: 134 LDLM 137 + L+ Sbjct: 120 VILI 123 >gi|315038022|ref|YP_004031590.1| recombination factor protein RarA [Lactobacillus amylovorus GRL 1112] gi|312276155|gb|ADQ58795.1| recombination factor protein RarA [Lactobacillus amylovorus GRL 1112] gi|327183302|gb|AEA31749.1| recombination factor protein RarA [Lactobacillus amylovorus GRL 1118] Length = 434 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ +AR L ++ GPPG+GKT++A +A Sbjct: 8 MRPKNLDEVVGQQHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR + +A+ G ++ + VL +DEIHRL ++ L P +E Q Sbjct: 66 FRKLNAATDGKKQLQQVAEEGKMSGTV-------VLLLDEIHRLDKTKQDFLLPLLESGQ 118 Query: 134 LDLM 137 + L+ Sbjct: 119 VILI 122 >gi|297676986|ref|XP_002816398.1| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1-like [Pongo abelii] Length = 658 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ +A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 224 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 278 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 279 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 337 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 338 VECGTITLIGATTENPSFQVNAALLSRCRVI 368 >gi|281355193|ref|ZP_06241687.1| AAA ATPase central domain protein [Victivallis vadensis ATCC BAA-548] gi|281318073|gb|EFB02093.1| AAA ATPase central domain protein [Victivallis vadensis ATCC BAA-548] Length = 438 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 16/157 (10%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVL 58 M+ E L S V + AD +RP +L+E GQ + + L+ I++ + L + Sbjct: 1 MEEETLFSAGVGRPLAD--RMRPASLDEIVGQDHLLGPDAPLRRMIDSGR-----LASFI 53 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDE 113 GPPG GKTTLA+++A ++F + S + KA ++A + + +LFIDE Sbjct: 54 LWGPPGCGKTTLARIMATRTSLHFVALSAVFSGIADLRKAFEVAGKRRSCGEGTLLFIDE 113 Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 IHR + ++ P +E+ + ++VG S ++N Sbjct: 114 IHRFNRAQQDGFLPYVENGTV-ILVGATTENPSFELN 149 >gi|301789397|ref|XP_002930115.1| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1-like [Ailuropoda melanoleuca] Length = 618 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 184 MRPDTLQDYIGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 238 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 239 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 297 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 298 VECGTITLIGATTENPSFQVNAALLSRCRVI 328 >gi|297623701|ref|YP_003705135.1| AAA ATPase central domain-containing protein [Truepera radiovictrix DSM 17093] gi|297164881|gb|ADI14592.1| AAA ATPase central domain protein [Truepera radiovictrix DSM 17093] Length = 439 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 10/143 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L E GQ K A R L +L GPPG+GKTTLA+++A G + Sbjct: 15 VRPRQLHEIVGQRHLLGPGKPLAVMATGR---LRSLLLWGPPGVGKTTLARLLAESSGAH 71 Query: 82 FRS----TSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F T+G +A A + + +LF+DE+HR + +++L P +ED L L Sbjct: 72 FVGLSAVTAGVKEVRAVAAEAAERRAQGGQTLLFLDEVHRFNKAQQDLLLPFVEDGTLTL 131 Query: 137 M--VGEGPSARSVKINLSRFTLI 157 + E PS SR L Sbjct: 132 IGATTENPSFEVTGALRSRLQLF 154 >gi|293392025|ref|ZP_06636359.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952559|gb|EFE02678.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 446 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 19/121 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL ++ GQ K +A +A + ++F GPPG GKTTLA++++ + Sbjct: 20 MRPTTLAQYCGQSHLLGEGKPLRKAIEAGY--VHSMIFWGPPGTGKTTLAEIISHRINAE 77 Query: 82 FRSTSGPVI-----------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 S AK LA L R +LF+DE+HR + ++ P +E Sbjct: 78 VERISAVTSGIKEIREAIDKAKQNKLAGL------RTILFVDEVHRFNKSQQDAFLPHIE 131 Query: 131 D 131 D Sbjct: 132 D 132 >gi|193215466|ref|YP_001996665.1| recombination factor protein RarA [Chloroherpeton thalassium ATCC 35110] gi|193088943|gb|ACF14218.1| AAA ATPase central domain protein [Chloroherpeton thalassium ATCC 35110] Length = 439 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL+E GQ ++ S + F+ + ++ GPPG+GKTTLA +++R Sbjct: 24 MRPKTLDEVIGQPHLTDSHSPFRQFLSSGD-----FPSMILWGPPGVGKTTLALLLSRNS 78 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN-LED-----RDVLFIDEIHRLSIIVEEILYPAMEDF 132 G + S + + ++ +++T L++ + LFIDEIHR + ++ L A+E Sbjct: 79 GYEYMQISA-IDSGVKEVRSVITQALQNHKRGKKTSLFIDEIHRFNKAQQDALLGAVEKG 137 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L L+ E PS + LSR Sbjct: 138 TLKLIGATTENPSFEVIPALLSR 160 >gi|111038318|gb|ABH03541.1| putative Werner helicase-interacting protein [Arabidopsis thaliana] Length = 524 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 38/188 (20%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 R L S + Q +RPRTL++ GQ S + A ++ L ++F GPP Sbjct: 88 RHKLSSSSHRQHQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVES--NRLPSIVFWGPP 145 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-----------------R 106 G GKT++A+ + S+ P + + L+A+ + ++D R Sbjct: 146 GTGKTSIAKSL-------INSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKR 198 Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRV 163 VLF+DE+HR + ++ P +ED + L +G E PS + LSR RV Sbjct: 199 TVLFMDEVHRFNKSQQDTFLPVIEDGSI-LFIGATTENPSFHLITPLLSR-------CRV 250 Query: 164 GLLTNPLQ 171 L NPL+ Sbjct: 251 -LTLNPLK 257 >gi|50954757|ref|YP_062045.1| recombination factor protein RarA [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951239|gb|AAT88940.1| ATPase related to the helicase subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 446 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 14/134 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L++ GQ + S L + ++ ++ +L+ GPPG GKTTLAQ +A Sbjct: 19 MRPTSLDDVAGQRHLLRPGSPLVALASDKEGQSGSVSVILW-GPPGTGKTTLAQAIAHSS 77 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMED 131 G F S V A D+ ++ L RD VLF+DEIHR + ++ L P +E+ Sbjct: 78 GRRFVELSA-VTAGVKDVRLVMDEALSTRDLYGVSTVLFLDEIHRFTKAQQDALLPGVEN 136 Query: 132 FQLDLMVG--EGPS 143 + L+ E PS Sbjct: 137 GWVILVAATTENPS 150 >gi|71274773|ref|ZP_00651061.1| AAA ATPase, central region [Xylella fastidiosa Dixon] gi|71901409|ref|ZP_00683500.1| AAA ATPase, central region [Xylella fastidiosa Ann-1] gi|170729983|ref|YP_001775416.1| recombination factor protein RarA [Xylella fastidiosa M12] gi|71164505|gb|EAO14219.1| AAA ATPase, central region [Xylella fastidiosa Dixon] gi|71728814|gb|EAO30954.1| AAA ATPase, central region [Xylella fastidiosa Ann-1] gi|167964776|gb|ACA11786.1| ATPase [Xylella fastidiosa M12] Length = 455 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 8/134 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL E GQ + + A + + ++ GPPG GKTTL+ ++A + Sbjct: 27 MRPRTLHEMVGQKRLLAPDRALHRAVAS--GNVHSMILWGPPGCGKTTLSLLLAHYIDAE 84 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ S P + + AA + R VLF+DE+HR + + ++ P +E + + Sbjct: 85 FRAVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSI-I 143 Query: 137 MVGEGPSARSVKIN 150 VG S ++N Sbjct: 144 FVGATTENPSFELN 157 >gi|332285169|ref|YP_004417080.1| ATPase [Pusillimonas sp. T7-7] gi|330429122|gb|AEC20456.1| ATPase [Pusillimonas sp. T7-7] Length = 443 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL + GQ LKV ++ + + ++F GPPG+GKTTLA+++A Sbjct: 24 MRPRTLADVVGQAHLLGPGKPLKVAFDSGRPHS-----MIFWGPPGVGKTTLARLMADGF 78 Query: 79 GVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED- 131 F + S V+ D+ A + R +LF+DE+HR + ++ P +E Sbjct: 79 DAQFLAMSA-VLGGVKDIREAVVSAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVESG 137 Query: 132 -FQLDLMVGEGPSARSVKINLSR 153 F E PS LSR Sbjct: 138 LFTFIGATTENPSFEVNSALLSR 160 >gi|224370722|ref|YP_002604886.1| putative ATPase [Desulfobacterium autotrophicum HRM2] gi|223693439|gb|ACN16722.1| putative ATPase [Desulfobacterium autotrophicum HRM2] Length = 451 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 118/262 (45%), Gaps = 36/262 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L E GQ + K+ + +A +L+ GPPG GKTTLA ++A+E + Sbjct: 24 MRPQRLGEVVGQDHVAAPGKI-LHSAITNDRVFSTILW-GPPGCGKTTLAGIIAKETSSH 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V++ D+ A++ ++ R ++F+DEIHR + ++ +E + Sbjct: 82 FMQLSA-VLSGVKDIRAVIETAKEQRRIRGRRTLVFVDEIHRFNKAQQDAFLHHVETGAI 140 Query: 135 DLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 ++VG E PS + +SR +I N L +R + I +E T Sbjct: 141 -VLVGATTENPSFEVIPALVSRCRVIT--------LNRLGERDIVTI------LERAATD 185 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV---AHAKT---ITREI 245 RG G+ + EA IA + G R A L + +A A KT IT E Sbjct: 186 PVRGLGSLGIIFSAEALNYIAATADGDVRAALATLETIGVYASARKGAGGKTPSAITPED 245 Query: 246 ADAALLRLAI--DKMGFDQLDL 265 AA+ + A+ DK G + +L Sbjct: 246 VAAAVEKKALRYDKSGEEHFNL 267 >gi|168182648|ref|ZP_02617312.1| ATPase, AAA family [Clostridium botulinum Bf] gi|237796008|ref|YP_002863560.1| recombination factor protein RarA [Clostridium botulinum Ba4 str. 657] gi|182674164|gb|EDT86125.1| ATPase, AAA family [Clostridium botulinum Bf] gi|229261667|gb|ACQ52700.1| ATPase, AAA family [Clostridium botulinum Ba4 str. 657] Length = 416 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 26/257 (10%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP+ LE+F GQ S K K ++ + + +F GPPG GKTTLA ++A + Sbjct: 7 LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64 Query: 81 NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + I ++ + + +L + VL+IDE+ + ++ L +ED ++ L Sbjct: 65 KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124 Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186 + E P K LSR + R ++ N L D+ GI I+ F +E Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYTFESLE 183 Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237 + I Q + + LAV I + +A +R E A Sbjct: 184 YIGEICQGDYRKAYNILELAVNSRCGFNIEITLDYIESLAQSNIRADATGDEYYNILSAF 243 Query: 238 AKTITREIADAALLRLA 254 K+I ADAA+ LA Sbjct: 244 QKSIRGSDADAAVHYLA 260 >gi|161378167|ref|NP_298742.2| recombination factor protein RarA [Xylella fastidiosa 9a5c] Length = 455 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV---LFVGPPGLGKTTLAQVVAREL 78 +RPRTL E GQ + + A RA A HV + GPPG GKTTL+ ++A+ + Sbjct: 27 MRPRTLHEMVGQKRLLAP-----DRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAQYI 81 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S P + + AA + R VLF+DE+HR + + ++ P +E Sbjct: 82 DAEFHAVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNNMQQDAFLPHIERGS 141 Query: 134 LDLMVGEGPSARSVKIN 150 + + VG S ++N Sbjct: 142 I-IFVGATTENPSFELN 157 >gi|115525555|ref|YP_782466.1| recombination factor protein RarA [Rhodopseudomonas palustris BisA53] gi|115519502|gb|ABJ07486.1| Recombination protein MgsA [Rhodopseudomonas palustris BisA53] Length = 442 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L + GQ + R+ L ++F GPPG GKTT+A+++A ++ Sbjct: 30 LRPRALSDVVGQDHILGPDGALTRMLETRS--LGSLVFWGPPGTGKTTVARLLADATELH 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + R +LF+DE+HR + ++ P MED + Sbjct: 88 FEQISA-VFSGVADLKKVFDAARARREMGRGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 146 VLVGATTENPSFELN 160 >gi|302389240|ref|YP_003825061.1| Recombination protein MgsA [Thermosediminibacter oceani DSM 16646] gi|302199868|gb|ADL07438.1| Recombination protein MgsA [Thermosediminibacter oceani DSM 16646] Length = 446 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 100/208 (48%), Gaps = 23/208 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+EF GQ K+ + + + + ++ GPPG+GKTTLA ++A Sbjct: 23 MRPRNLDEFVGQDHLLGRGKILRKLIEN--DLITSMILWGPPGVGKTTLAMIIAEMTRAR 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V++ ++ ++ ++ R ++FIDEIHR + ++ P +E + Sbjct: 81 FVTFSA-VLSGIKEVKEVMKEAQERRRYGQRTLVFIDEIHRFNKSQQDAFLPYVEKGDI- 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-DRFGIPIRLNFYEIEDLKTIVQR 194 +++G S ++N + + + ++V + NPL D + ++ + E R Sbjct: 139 ILIGATTENPSFELN----SALLSRSKV-FVMNPLSPDDLMVLLKRALRDEE-------R 186 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIA 222 G + V DE +IA+ + G R+A Sbjct: 187 GLGRFKVRVEDEQLYKIAVFANGDARVA 214 >gi|293399822|ref|ZP_06643968.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306222|gb|EFE47465.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 419 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +EE GQ V + A+ + ++F GPPG GKTTLA V+A EL + Sbjct: 9 MRPQKIEEIIGQKHLIGEGNVLRKCLAAKR--IFSMIFYGPPGTGKTTLAMVLANELELP 66 Query: 82 FRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +R + V +L + L +L +DE+HRL+ +++L P +E+ + L+ Sbjct: 67 YRLFNA-VTGNKKELEQIFAEARLYPGLILIVDEVHRLNKDKQDLLLPHVENGNITLI 123 >gi|260597296|ref|YP_003209867.1| recombination factor protein RarA [Cronobacter turicensis z3032] gi|260216473|emb|CBA29618.1| Replication-associated recombination protein A [Cronobacter turicensis z3032] Length = 447 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 14/164 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + K A +A L ++ GPPG GKTTLA+V+ R + Sbjct: 20 MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIGRYANAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A N R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATTRVGL---LTNPLQDR 173 + E PS S ++ +R L+ + T + LT + DR Sbjct: 138 IGATTENPSFELNSALLSRARVYLLKSLTVEDIEQVLTQAMNDR 181 >gi|9106473|gb|AAF84262.1|AE003975_5 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 429 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 13/117 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV---LFVGPPGLGKTTLAQVVAREL 78 +RPRTL E GQ + + A RA A HV + GPPG GKTTL+ ++A+ + Sbjct: 1 MRPRTLHEMVGQKRLLAP-----DRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAQYI 55 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + S P + + AA + R VLF+DE+HR + + ++ P +E Sbjct: 56 DAEFHAVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNNMQQDAFLPHIE 112 >gi|325919437|ref|ZP_08181463.1| Recombination protein MgsA [Xanthomonas gardneri ATCC 19865] gi|325550103|gb|EGD20931.1| Recombination protein MgsA [Xanthomonas gardneri ATCC 19865] Length = 457 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 29 MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYS 83 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F++ S P + + AA R VLF+DE+HR + ++ P +E Sbjct: 84 DAEFKAISAVLSGLPEVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 143 Query: 134 LDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 144 I-LFVGATTENPSFELN 159 >gi|260426610|ref|ZP_05780589.1| recombination factor protein RarA [Citreicella sp. SE45] gi|260421102|gb|EEX14353.1| recombination factor protein RarA [Citreicella sp. SE45] Length = 437 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 32/200 (16%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L+E GQ + + L + + + AL ++ GPPG+GKTT+A+++A Sbjct: 25 LRPRALDEVIGQRQLLGPDAPLGIMLASG-----ALSSLVLWGPPGVGKTTIARLLADAT 79 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A +LF+DEIHR + ++ P MED Sbjct: 80 DLHFVQISAIFTGVPELRKVFEAARHRRTNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 139 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + L+VG S ++N A +R +L L + DL+ + Q Sbjct: 140 I-LLVGATTENPSFELN------AALLSRAQVLV------------LERLSLADLERLAQ 180 Query: 194 RGAKLTGLAVTDEAACEIAM 213 R K G A+ + A A+ Sbjct: 181 RAEKELGRALPLDGAAREAL 200 >gi|74003977|ref|XP_535865.2| PREDICTED: similar to Werner helicase interacting protein isoform 1 [Canis familiaris] Length = 427 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 11 MRPDTLQDYIGQSRAVGQDTLLRSLLETTE-----IPSLILWGPPGCGKTTLAHIIANNS 65 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 66 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 124 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 125 VECGTITLIGATTENPSFQVNAALLSRCRVI 155 >gi|33152375|ref|NP_873728.1| recombination factor protein RarA [Haemophilus ducreyi 35000HP] gi|33148598|gb|AAP96117.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 446 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 22/168 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L ++ GQ L+ IEA A + ++ GPPG GKTTLA+++A+ Sbjct: 19 MRPRCLADYIGQSHLLGKDKPLRRAIEAGYAHS-----MILWGPPGTGKTTLAEIIAQHF 73 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 TSG I +A + A + +LF+DE+HR + ++ P +ED Sbjct: 74 DAEVERLSAVTSGVKEIREAIEQAKYNRQAGRKTLLFVDEVHRFNKSQQDAFLPYIEDGT 133 Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173 + + +G S ++N LSR + + A +L N LQD+ Sbjct: 134 V-IFIGATTENPSFELNNALLSRARIYLLKPLQADEIEQILQNALQDK 180 >gi|8886769|gb|AAF80563.1|AF218313_1 putative helicase RUVBL [Homo sapiens] gi|55661736|emb|CAH73665.1| Werner helicase interacting protein 1 [Homo sapiens] Length = 445 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ +A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 11 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 65 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 66 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 124 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 125 VECGTITLIGATTENPSFQVNAALLSRCRVI 155 >gi|304407556|ref|ZP_07389208.1| AAA ATPase central domain protein [Paenibacillus curdlanolyticus YK9] gi|304343507|gb|EFM09349.1| AAA ATPase central domain protein [Paenibacillus curdlanolyticus YK9] Length = 438 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 14/118 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+++ GQ K+ A + + + +L GPPG GKTTLA ++++ + Sbjct: 21 MRPETLDDYIGQEHIVGAGKLLRRAIEG--DRISSILLYGPPGCGKTTLAHIISKRTEAD 78 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + VI +A A+ + +LF+DE+HR + ++ L PA+E Sbjct: 79 FVKLNAVDASVKDVRDVIDRAKTAKAMYGR---KTILFLDEVHRFNSSRQDALLPAVE 133 >gi|296473933|gb|DAA16048.1| Werner helicase interacting protein 1 [Bos taurus] Length = 494 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP L++F GQ A L+ +EA++ + ++ GPPG GKTTLA ++A Sbjct: 204 MRPDALQDFVGQGRAVGPETLLRSLLEASE-----VPSLILWGPPGCGKTTLAHIIANNS 258 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 259 KKHSIRFVTLSA-TSAKTTDVRDVIKQAQNEKRFFKRKTILFIDEIHRFNKSQQDTFLPH 317 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 318 VECGTITLIGATTENPSFQVNAALLSRCRVI 348 >gi|322374037|ref|ZP_08048571.1| ATPase, AAA family [Streptococcus sp. C150] gi|321277003|gb|EFX54074.1| ATPase, AAA family [Streptococcus sp. C150] Length = 422 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPRTISEVIGQKHLVGKGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E+ ++ + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKAKQDFLLPLLENGKI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|145637468|ref|ZP_01793126.1| predicted ATPase [Haemophilus influenzae PittHH] gi|145269274|gb|EDK09219.1| predicted ATPase [Haemophilus influenzae PittHH] Length = 446 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 14/151 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A D A + + +LF+DE+HR + ++ P +ED + + Sbjct: 78 VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGSV-I 136 Query: 137 MVGEGPSARSVKIN---LSR---FTLIAATT 161 +G S ++N LSR + L + TT Sbjct: 137 FIGATTENPSFELNNALLSRARVYVLKSLTT 167 >gi|308174454|ref|YP_003921159.1| helicase associated protein [Bacillus amyloliquefaciens DSM 7] gi|307607318|emb|CBI43689.1| putative helicase associated protein (ATPase, AAA family) [Bacillus amyloliquefaciens DSM 7] gi|328554373|gb|AEB24865.1| recombination factor protein RarA [Bacillus amyloliquefaciens TA208] gi|328912777|gb|AEB64373.1| putative helicase associated protein (ATPase, AAA family) [Bacillus amyloliquefaciens LL3] Length = 422 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+ GQ K+ RA+ L ++ GPPG+GKT++A +A + Sbjct: 8 MRPANIEDIIGQEHLVKEDKII--GRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIA 65 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 FR + VI D+ ++ + + +L +DE+HRL ++ L P +E+ Sbjct: 66 FRKLNA-VIHNKKDMEIVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116 >gi|291287827|ref|YP_003504643.1| AAA ATPase central domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290884987|gb|ADD68687.1| AAA ATPase central domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 426 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 7/121 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR ++ GQ VF + + D V+ VGPPG GKTTLA+++ + L + Sbjct: 7 LRPRAFDDIAGQKHLIGVDSVFRKMVEDGG--FDSVVLVGPPGTGKTTLAEIIGKHLNMP 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 + S A +GDL ++ + ++F+DE+HR + +++L M D L ++ Sbjct: 65 YFSLHA-ATAGSGDLKQIMESARHAGKTVLVFVDELHRFN-KTQQVLLLNMIDSGLAKLI 122 Query: 139 G 139 G Sbjct: 123 G 123 >gi|254451290|ref|ZP_05064727.1| ATPase, AAA family [Octadecabacter antarcticus 238] gi|198265696|gb|EDY89966.1| ATPase, AAA family [Octadecabacter antarcticus 238] Length = 435 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L+E GQ + + L V + + + ++F GPPG+GKTT+A+++A E Sbjct: 23 LRPKSLDEVIGQEQVLGPDAPLGVMLSSGSLSS-----LIFWGPPGVGKTTIARLLADET 77 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 78 DLHFIQISAIFTGMPDLRKVFEAAKMRRANGKGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137 Query: 134 LDLMVGEGPSARSVKIN 150 + L+VG S ++N Sbjct: 138 I-LLVGATTENPSFELN 153 >gi|163752933|ref|ZP_02160057.1| ATPase, AAA family protein [Kordia algicida OT-1] gi|161326665|gb|EDP97990.1| ATPase, AAA family protein [Kordia algicida OT-1] Length = 431 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TLE++ Q V + R + +L GPPG GKTTLA ++A Sbjct: 15 IRPKTLEDYISQEHLVGETGVLTR--QIRQGIIPSLLLWGPPGTGKTTLANIIATTSDRP 72 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VI +A L T +LFIDEIHR S ++ L A+E Sbjct: 73 FYTLSAISSGVKEVREVIQRAKQDNGLFTT--KNPILFIDEIHRFSKSQQDSLLGAVEKG 130 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 131 WVTLIGATTENPSFEVIPALLSR 153 >gi|154686894|ref|YP_001422055.1| recombination factor protein RarA [Bacillus amyloliquefaciens FZB42] gi|154352745|gb|ABS74824.1| YrvN [Bacillus amyloliquefaciens FZB42] Length = 422 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+ GQ K+ RA+ L ++ GPPG+GKT++A +A + Sbjct: 8 MRPANIEDIIGQEHLVKEDKII--GRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIA 65 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 FR + VI D+ ++ + + +L +DE+HRL ++ L P +E+ Sbjct: 66 FRKLNA-VIHNKKDMEIVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116 >gi|325684423|gb|EGD26591.1| ATPase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 434 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+++++ GQ K+ +AR L ++ GPPG+GKT++A +A Sbjct: 8 MRPQSIDQVVGQQHLVGPKKIIRRMVEARQ--LSSMILYGPPGIGKTSIASAIAGSSRYA 65 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR + +A G ++ + VL +DEIHRL+ + ++ L P +E Q Sbjct: 66 FRQLNAATDGQKELSQVAAEGKMSGTV-------VLLLDEIHRLNKVKQDFLLPLLESGQ 118 Query: 134 LDLMVG 139 + +M+G Sbjct: 119 V-IMIG 123 >gi|313123418|ref|YP_004033677.1| recombination factor protein rara [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279981|gb|ADQ60700.1| Recombination factor protein RarA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 434 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+++++ GQ K+ +AR L ++ GPPG+GKT++A +A Sbjct: 8 MRPQSIDQVVGQQHLVGPKKIIRRMVEARQ--LSSMILYGPPGIGKTSIASAIAGSSKYA 65 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR + +A G ++ + VL +DEIHRL+ + ++ L P +E Q Sbjct: 66 FRQLNAATDGQKELSQVAAEGRMSGTV-------VLLLDEIHRLNKVKQDFLLPLLESGQ 118 Query: 134 LDLMVG 139 + +M+G Sbjct: 119 V-IMIG 123 >gi|304314451|ref|YP_003849598.1| replication factor C, large subunit [Methanothermobacter marburgensis str. Marburg] gi|302587910|gb|ADL58285.1| replication factor C, large subunit [Methanothermobacter marburgensis str. Marburg] Length = 470 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 8/100 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR----- 76 RPRT EE G +A + +K +I KA E +L VGPPG GKTT+A ++ R Sbjct: 7 YRPRTFEEVAGNQKAIAEIKKWISGWKA-GEPQPPLLLVGPPGTGKTTMAHIIGREFSDT 65 Query: 77 -ELGVNFRSTSGPVIAKAGDLAALLTNL-EDRDVLFIDEI 114 EL + + + ++ AG+ +A + D ++ +DE+ Sbjct: 66 LELNASDKRSQDAIMRTAGEASATRSLFNHDLKLIILDEV 105 >gi|229847091|ref|ZP_04467196.1| recombination factor protein RarA [Haemophilus influenzae 7P49H1] gi|229809920|gb|EEP45641.1| recombination factor protein RarA [Haemophilus influenzae 7P49H1] Length = 446 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 14/151 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A D A + + +LF+DE+HR + ++ P +ED + + Sbjct: 78 VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGSV-I 136 Query: 137 MVGEGPSARSVKIN---LSR---FTLIAATT 161 +G S ++N LSR + L + TT Sbjct: 137 FIGATTENPSFELNNALLSRARVYVLKSLTT 167 >gi|213963197|ref|ZP_03391454.1| ATPase, AAA family [Capnocytophaga sputigena Capno] gi|213954059|gb|EEB65384.1| ATPase, AAA family [Capnocytophaga sputigena Capno] Length = 425 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 21/146 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L ++ GQ V A L+ IE L ++F GPPG GKTTLA ++A + Sbjct: 8 MRPTSLAQYVGQEHLVGAQGALRQQIERG-----LLPSLIFWGPPGTGKTTLANIIAHQS 62 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F + S VI ++ L T ++FIDEIHR + ++ L A+ Sbjct: 63 NRAFYTLSAISSGIKDVREVIDQSKQSGGLFTT--QNPIVFIDEIHRFNKTQQDSLLQAV 120 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153 E + L+ E PS + LSR Sbjct: 121 EKGWITLIGATTENPSFEVIPALLSR 146 >gi|154757528|gb|AAI51634.1| WRNIP1 protein [Bos taurus] Length = 545 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP L++F GQ A L+ +EA++ + ++ GPPG GKTTLA ++A Sbjct: 111 MRPDALQDFVGQGRAVGPETLLRSLLEASE-----VPSLILWGPPGCGKTTLAHIIANNS 165 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 166 KKHSIRFVTLSA-TSAKTTDVRDVIKQAQNEKRFFKRKTILFIDEIHRFNKSQQDTFLPH 224 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 225 VECGTITLIGATTENPSFQVNAALLSRCRVI 255 >gi|156718142|ref|NP_001096576.1| ATPase WRNIP1 [Bos taurus] gi|151553722|gb|AAI50137.1| Werner helicase interacting protein 1 [Bos taurus] Length = 638 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP L++F GQ A L+ +EA++ + ++ GPPG GKTTLA ++A Sbjct: 204 MRPDALQDFVGQGRAVGPETLLRSLLEASE-----VPSLILWGPPGCGKTTLAHIIANNS 258 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 259 KKHSIRFVTLSA-TSAKTTDVRDVIKQAQNEKRFFKRKTILFIDEIHRFNKSQQDTFLPH 317 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 318 VECGTITLIGATTENPSFQVNAALLSRCRVI 348 >gi|332246193|ref|XP_003272237.1| PREDICTED: ATPase WRNIP1 isoform 2 [Nomascus leucogenys] Length = 592 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 204 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 258 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 259 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 317 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 318 VECGTITLIGATTENPSFQVNAALLSRCRVI 348 >gi|319792075|ref|YP_004153715.1| aaa atpase central domain protein [Variovorax paradoxus EPS] gi|315594538|gb|ADU35604.1| AAA ATPase central domain protein [Variovorax paradoxus EPS] Length = 430 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 53/255 (20%) Query: 22 LRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ +L++ E+ + + + GPPG GKTT+A+++A Sbjct: 13 LRPKTLGEVIGQQHLLGPGMSLRIAFESGQPHS-----CILWGPPGTGKTTIARLMADAF 67 Query: 79 GVNFRSTSGPVIAKAGDL-------AALLTNLED-RDVLFIDEIHRLSIIVEEILYPAME 130 F S S V+ D+ A LE R ++F+DE+HR + ++ P +E Sbjct: 68 DAQFLSISA-VLGGVKDIREAVERATAARDGLEQRRTIVFVDEVHRFNKSQQDAFLPHVE 126 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIE--- 186 FT I ATT NP + + R Y ++ Sbjct: 127 S--------------------GLFTFIGATTE-----NPSFEVNSALLSRAAVYVLQPLT 161 Query: 187 --DLKTIVQRGAKLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 DL+ IV + + + DE A + + + G R RLL + A A A+ + Sbjct: 162 EGDLEQIVAKAQSIQAVPAIDETAIDRLVAYADGDAR---RLLNTLETLAVAARAEKLA- 217 Query: 244 EIADAALLRLAIDKM 258 I+D LLR+ ++M Sbjct: 218 NISDEWLLRVLGERM 232 >gi|183598337|ref|ZP_02959830.1| hypothetical protein PROSTU_01729 [Providencia stuartii ATCC 25827] gi|188020513|gb|EDU58553.1| hypothetical protein PROSTU_01729 [Providencia stuartii ATCC 25827] Length = 447 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 11/147 (7%) Query: 6 GLLSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 G LS + SQ + + +RP LE++ GQ + K A KA L ++ GPP Sbjct: 2 GNLSLDFSQNEFQPLAARMRPEVLEQYIGQKHLLAEGKPLPRAIKA--GHLHSMILWGPP 59 Query: 64 GLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 G GKTTLA+++ + TSG I +A + A + R +LF+DE+HR + Sbjct: 60 GTGKTTLAEIIGHYAQADIERISAVTSGIKEIREAIEKARQNRDAGRRTILFVDEVHRFN 119 Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPS 143 ++ P +ED + + E PS Sbjct: 120 KSQQDAFLPHIEDGTITFIGATTENPS 146 >gi|56551017|ref|YP_161856.1| recombination factor protein RarA [Zymomonas mobilis subsp. mobilis ZM4] gi|56542591|gb|AAV88745.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 449 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI LRP+ L + GQ + A L ++ GPPG GKT++AQ++A Sbjct: 28 ADI--LRPKHLSDVIGQAHVTGENGII--GRMVAAGRLSSLILWGPPGTGKTSIAQLLAE 83 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 +G+ F S + + DL + E + +LFIDEIHR + ++ P +E Sbjct: 84 SVGMRFEMVSA-IFSGVADLKKIFLKAEHHRQQGRQTLLFIDEIHRFNKGQQDSFLPYIE 142 Query: 131 D--FQLDLMVGEGPS 143 + F L E PS Sbjct: 143 NGTFVLVGATTENPS 157 >gi|109069429|ref|XP_001090565.1| PREDICTED: ATPase WRNIP1 isoform 2 [Macaca mulatta] Length = 614 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 231 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 285 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375 >gi|294636938|ref|ZP_06715264.1| replication-associated recombination protein A [Edwardsiella tarda ATCC 23685] gi|291089856|gb|EFE22417.1| replication-associated recombination protein A [Edwardsiella tarda ATCC 23685] Length = 447 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR----E 77 +RP+TLE++ GQ + K A A L ++ GPPG GKTTLA+++AR E Sbjct: 20 MRPQTLEQYIGQRHLLAAGKPLPRAILA--GHLHSMILWGPPGTGKTTLAELIARYGHAE 77 Query: 78 LGVNFRSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 + TSG I +A + A ++ R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGIKEIREAIERARQNRDVGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|260753314|ref|YP_003226207.1| recombination factor protein RarA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552677|gb|ACV75623.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 449 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI LRP+ L + GQ + A L ++ GPPG GKT++AQ++A Sbjct: 28 ADI--LRPKHLSDVIGQAHVTGENGII--GRMVAAGRLSSLILWGPPGTGKTSIAQLLAE 83 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 +G+ F S + + DL + E + +LFIDEIHR + ++ P +E Sbjct: 84 SVGMRFEMVSA-IFSGVADLKKIFLKAEHHRQQGRQTLLFIDEIHRFNKGQQDSFLPYIE 142 Query: 131 D--FQLDLMVGEGPS 143 + F L E PS Sbjct: 143 NGTFVLVGATTENPS 157 >gi|332246191|ref|XP_003272236.1| PREDICTED: ATPase WRNIP1 isoform 1 [Nomascus leucogenys] Length = 638 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 204 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 258 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 259 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 317 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 318 VECGTITLIGATTENPSFQVNAALLSRCRVI 348 >gi|226306471|ref|YP_002766431.1| ATPase [Rhodococcus erythropolis PR4] gi|226185588|dbj|BAH33692.1| putative ATPase [Rhodococcus erythropolis PR4] Length = 479 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 21/145 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL E GQ + + L+ +E + A + VL GPPG GKTTLA +++ Sbjct: 59 MRPLTLGEVVGQQHLLGPGAPLRRMVEGSGAAS-----VLLYGPPGTGKTTLASLISGAT 113 Query: 79 GVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 G F + S + A ++ + L N E + VLFIDE+HR S ++ L A+E+ Sbjct: 114 GRRFEALSA-LSAGVKEVRGVIELARRRLLNGE-QTVLFIDEVHRFSKTQQDALLAAVEN 171 Query: 132 FQLDLMVG---EGPSARSVKINLSR 153 ++ L+VG E PS V LSR Sbjct: 172 -RIVLLVGATTENPSFSVVSALLSR 195 >gi|193216561|ref|YP_001999803.1| recombination factor protein RarA [Mycoplasma arthritidis 158L3-1] gi|193001884|gb|ACF07099.1| ATPase, related to the helicase subunit of the Holliday junction resolvase [Mycoplasma arthritidis 158L3-1] Length = 402 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 40/219 (18%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 +++N++Q+ RP L++F C++ + F+ + +F G PG GK Sbjct: 1 MNKNLAQK------TRPIALDDFV-----CNDSQRFLFEKIIANDDFRSFIFYGKPGTGK 49 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 TT++ ++A L V+F + I K DL A L+ +L IDEIHRL+ ++IL P Sbjct: 50 TTISYILASSLKVSFDYFNA-AIEKKEDLVA---KLKLNKILIIDEIHRLNKDKQDILLP 105 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL-TNP-LQDRFGIPIRLNFYEI 185 +E+ DL+ T+ A TT NP L+ R I + + I Sbjct: 106 YIEN---DLI-----------------TIYATTTENPYFKVNPALRSRCAI-VEIKNPSI 144 Query: 186 EDLKTIVQRGAKLTGL--AVTDEAACEIAMRSRGTPRIA 222 +DL +++ A L ++DE IA +S G R A Sbjct: 145 DDLSKQLKKIALNNQLDSNLSDEIYHFIASQSNGDYRSA 183 >gi|156934613|ref|YP_001438529.1| recombination factor protein RarA [Cronobacter sakazakii ATCC BAA-894] gi|156532867|gb|ABU77693.1| hypothetical protein ESA_02447 [Cronobacter sakazakii ATCC BAA-894] Length = 428 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ + K A +A L ++ GPPG GKTTLA+V+ R + Sbjct: 1 MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIGRYANAD 58 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A N R +LF+DE+HR + ++ P +ED + Sbjct: 59 VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118 Query: 137 M--VGEGPS 143 + E PS Sbjct: 119 IGATTENPS 127 >gi|296284469|ref|ZP_06862467.1| recombination factor protein RarA [Citromicrobium bathyomarinum JL354] Length = 440 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 16/127 (12%) Query: 14 QEDADIS-LLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 +EDA ++ LRPRTL E GQ ++ + A + L ++ GPPG GKTT Sbjct: 21 REDAPLADRLRPRTLSEVVGQEHLTGPEGSIGRMVAAGR-----LSSMILWGPPGTGKTT 75 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEE 123 +A+++A +G+ + + S V + DL E + +LF+DEIHR + ++ Sbjct: 76 IARLLADSVGMRYAAVSA-VFSGVADLKKAFAEAETAAKAGQKTLLFVDEIHRFNRAQQD 134 Query: 124 ILYPAME 130 P +E Sbjct: 135 GFLPFVE 141 >gi|228999186|ref|ZP_04158768.1| hypothetical protein bmyco0003_37430 [Bacillus mycoides Rock3-17] gi|229006734|ref|ZP_04164368.1| hypothetical protein bmyco0002_36360 [Bacillus mycoides Rock1-4] gi|228754595|gb|EEM04006.1| hypothetical protein bmyco0002_36360 [Bacillus mycoides Rock1-4] gi|228760803|gb|EEM09767.1| hypothetical protein bmyco0003_37430 [Bacillus mycoides Rock3-17] Length = 428 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 83/330 (25%), Positives = 128/330 (38%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIKEIIGQEHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEIE---------DLK 189 TLI ATT +NP I R +E+ LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTENDILIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VTDEA A S G R A L + F + IT E Sbjct: 161 RALEDKEKGLGEYHVTVTDEAMRHFANASGGDMRSAYNALELAVLSSFTTDDQSTEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|256820268|ref|YP_003141547.1| recombination factor protein RarA [Capnocytophaga ochracea DSM 7271] gi|256581851|gb|ACU92986.1| AAA ATPase central domain protein [Capnocytophaga ochracea DSM 7271] Length = 426 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 21/146 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L ++ GQ V A L+ IE L ++F GPPG GKTTLA ++A + Sbjct: 9 MRPTSLAQYVGQEHLVGAQGALRQQIERG-----LLPSLIFWGPPGTGKTTLANIIAHQS 63 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F + S VI ++ L T ++FIDEIHR + ++ L A+ Sbjct: 64 NRAFYTLSAISSGIKEVREVIDQSKQSGGLFTT--QNPIVFIDEIHRFNKTQQDSLLQAV 121 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153 E + L+ E PS + LSR Sbjct: 122 EKGWITLIGATTENPSFEVIPALLSR 147 >gi|325578148|ref|ZP_08148283.1| replication-associated recombination protein A [Haemophilus parainfluenzae ATCC 33392] gi|325159884|gb|EGC72013.1| replication-associated recombination protein A [Haemophilus parainfluenzae ATCC 33392] Length = 446 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE++ GQ K +A +A + ++ GPPG GKTTLA+++A + Sbjct: 20 MRPTNLEQYYGQTHLIGEGKPLRKAIQAGH--VHSMILWGPPGTGKTTLAEIIAHRINAE 77 Query: 82 FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 TSG + A L DR +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|118591151|ref|ZP_01548550.1| AAA ATPase, central region [Stappia aggregata IAM 12614] gi|118436227|gb|EAV42869.1| AAA ATPase, central region [Stappia aggregata IAM 12614] Length = 434 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L + GQ K R L ++F GPPG GKTT+A+++A E + Sbjct: 22 MRPTRLADVVGQDHLLGPEGTLSRMLKTRT--LGSLIFWGPPGTGKTTIARLLANETDLA 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + ++ P MED + Sbjct: 80 FEQISA-IFSGVADLKKVFEAARARRMSGRATLLFVDEIHRFNRAQQDSFLPVMEDGTIT 138 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 139 LVGATTENPS 148 >gi|229493645|ref|ZP_04387430.1| recombination factor protein RarA [Rhodococcus erythropolis SK121] gi|229319606|gb|EEN85442.1| recombination factor protein RarA [Rhodococcus erythropolis SK121] Length = 470 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 21/145 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL E GQ + + L+ +E + A + VL GPPG GKTTLA +++ Sbjct: 50 MRPLTLGEVVGQQHLLGPGAPLRRMVEGSGAAS-----VLLYGPPGTGKTTLASLISGAT 104 Query: 79 GVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 G F + S + A ++ + L N E + VLFIDE+HR S ++ L A+E+ Sbjct: 105 GRRFEALSA-LSAGVKEVRGVIELARRRLLNGE-QTVLFIDEVHRFSKTQQDALLAAVEN 162 Query: 132 FQLDLMVG---EGPSARSVKINLSR 153 ++ L+VG E PS V LSR Sbjct: 163 -RIVLLVGATTENPSFSVVSALLSR 186 >gi|332246195|ref|XP_003272238.1| PREDICTED: ATPase WRNIP1 isoform 3 [Nomascus leucogenys] Length = 587 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 204 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 258 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 259 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 317 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 318 VECGTITLIGATTENPSFQVNAALLSRCRVI 348 >gi|289666013|ref|ZP_06487594.1| recombination factor protein RarA [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 8 MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 62 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F++ S P + + AA R VLF+DE+HR + ++ P +E Sbjct: 63 DAEFKAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 122 Query: 134 LDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 123 I-LFVGATTENPSFELN 138 >gi|145635701|ref|ZP_01791396.1| predicted ATPase [Haemophilus influenzae PittAA] gi|145267024|gb|EDK07033.1| predicted ATPase [Haemophilus influenzae PittAA] Length = 446 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 TSG + A L DR +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|206561377|ref|YP_002232142.1| recombination factor protein RarA [Burkholderia cenocepacia J2315] gi|198037419|emb|CAR53354.1| putative ATPase protein [Burkholderia cenocepacia J2315] Length = 441 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 111/257 (43%), Gaps = 38/257 (14%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 22 LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + +D +LF+DEIHR + ++ L P +E Sbjct: 77 DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 135 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + LN E+ L Sbjct: 136 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKS-----------LNDDEMRQLLKR 179 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 Q A L GLA D+A + + G R LL + + A A TI + +A+ Sbjct: 180 AQEIA-LDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATIDADFVSSAMT 238 Query: 252 RLA--IDKMG---FDQL 263 A DK G +DQ+ Sbjct: 239 LNARRFDKGGDNFYDQI 255 >gi|301156050|emb|CBW15521.1| recombination protein [Haemophilus parainfluenzae T3T1] Length = 446 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE++ GQ K +A +A + ++ GPPG GKTTLA+++A + Sbjct: 20 MRPTNLEQYYGQTHLIGEGKPLRKAIQA--GHVHSMILWGPPGTGKTTLAEIIANRINAE 77 Query: 82 FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 TSG + A L DR +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|212635390|ref|YP_002311915.1| recombination factor protein RarA [Shewanella piezotolerans WP3] gi|212556874|gb|ACJ29328.1| AAA ATPase, central region [Shewanella piezotolerans WP3] Length = 443 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 17/139 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL ++ GQ L+ +EA +A + ++F GPPG GKTTLA++VA Sbjct: 19 MRPETLSQYIGQQHLLGEGQPLRQALEAGRAHS-----MMFWGPPGTGKTTLAELVASYA 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + ++ + + + + R +LF+DE+HR + ++ P +ED Sbjct: 74 NAHVERISA-VTSGVKEIRSAIEHAKSVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132 Query: 132 FQLDLMVGEGPSARSVKIN 150 + + +G S +IN Sbjct: 133 GTV-IFIGATTENPSFEIN 150 >gi|294625024|ref|ZP_06703674.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666603|ref|ZP_06731842.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600699|gb|EFF44786.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603623|gb|EFF47035.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 429 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 1 MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 55 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F++ S P + + AA R VLF+DE+HR + ++ P +E Sbjct: 56 DAEFKAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 115 Query: 134 LDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 116 I-LFVGATTENPSFELN 131 >gi|229019621|ref|ZP_04176433.1| hypothetical protein bcere0030_41230 [Bacillus cereus AH1273] gi|229025861|ref|ZP_04182257.1| hypothetical protein bcere0029_41520 [Bacillus cereus AH1272] gi|228735413|gb|EEL86012.1| hypothetical protein bcere0029_41520 [Bacillus cereus AH1272] gi|228741669|gb|EEL91857.1| hypothetical protein bcere0030_41230 [Bacillus cereus AH1273] Length = 428 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 103/263 (39%), Gaps = 47/263 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT+EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTNEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDL 265 IA+ L + + DK G D+ Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV 243 >gi|320095686|ref|ZP_08027342.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 178 str. F0338] gi|319977407|gb|EFW09094.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 178 str. F0338] Length = 456 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + L+ IEA + + ++F GPPG+GKTTLA+V+AR Sbjct: 23 MRPASLDEVVGQSHQIGPGKALRSMIEADRTPS-----MIFWGPPGVGKTTLARVIARRT 77 Query: 79 GVNF----RSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +F TSG I + A + R ++F+DEIHR + ++ P +E Sbjct: 78 CASFIDFSAVTSGIKEIREVMRQADAQASTGRRTIVFVDEIHRFNKAQQDAFLPFVEKGS 137 Query: 134 LDLMVGEGPSARSVKIN 150 + +++G S ++N Sbjct: 138 I-ILIGATTENPSFEVN 153 >gi|308189843|ref|YP_003922774.1| hypothetical protein MFE_02830 [Mycoplasma fermentans JER] gi|307624585|gb|ADN68890.1| hypothetical protein MFE_02830 [Mycoplasma fermentans JER] Length = 235 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/216 (20%), Positives = 96/216 (44%), Gaps = 7/216 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 L P +EF GQ + +L + ++ +K + +++FV P G GK +LA ++++ + Sbjct: 4 LTPINFKEFRGQKDLIKSLIILLQESKK----IPNMIFVAPKGYGKYSLANIISQFKDRS 59 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + I +L +L NL++ +LFI++I++L ++++L+ LD + Sbjct: 60 LHPITSNNIIDEFELLNILANLKNNAILFIEDINKLKPELKKLLFDIYNSINLDKVEKIC 119 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 S + +KI F++I + + + F I L Y + +L I+ T Sbjct: 120 YSNKRLKI--KNFSIIGTINSSNQIDSSKWEGFKI-FNLKKYSLNNLNQIINYNRIKTNF 176 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 +++ I P I + + D+ + + Sbjct: 177 KLSNSLVEYILNNCNNNPGILNEVYLKAIDYFAIKN 212 >gi|116510915|ref|YP_808131.1| recombination factor protein RarA [Lactococcus lactis subsp. cremoris SK11] gi|116106569|gb|ABJ71709.1| Recombination protein MgsA [Lactococcus lactis subsp. cremoris SK11] Length = 419 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR ++E GQ K+ + + L ++ GPPG+GKT++A +A + + Sbjct: 9 MRPRNIDEIVGQRHLVGKGKIIRRMVET--QLLSSMILYGPPGIGKTSIASAIAGTMNIA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + IA + + L VL +DEIHRL ++ L P +E+ Q Sbjct: 67 FRTFNATTDTKKRLQEIASEAEFSGQL-------VLLLDEIHRLDKPKQDFLLPLLENGQ 119 Query: 134 LDLM 137 + L+ Sbjct: 120 IILI 123 >gi|297289911|ref|XP_002803619.1| PREDICTED: ATPase WRNIP1 [Macaca mulatta] Length = 619 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 231 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 285 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375 >gi|260582200|ref|ZP_05849994.1| formyltetrahydrofolate deformylase [Haemophilus influenzae NT127] gi|260094832|gb|EEW78726.1| formyltetrahydrofolate deformylase [Haemophilus influenzae NT127] Length = 446 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A D A + + +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|261856111|ref|YP_003263394.1| ATPase AAA [Halothiobacillus neapolitanus c2] gi|261836580|gb|ACX96347.1| AAA ATPase central domain protein [Halothiobacillus neapolitanus c2] Length = 433 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 11/140 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP T +E GQ K A +AR ++ GPPG+GKTTLA+++A+ + Sbjct: 17 LRPHTPDEVIGQTHLLGEGKPLRLAFEARKP--HSMILWGPPGVGKTTLARLMAKAFDSS 74 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V + D+ A + E +LFIDEIHR + ++ L P E + Sbjct: 75 FIALSA-VFSGVKDIRAAMDEAERNLALGHPTLLFIDEIHRFNKAQQDALLPYAESGLVT 133 Query: 136 LM--VGEGPSARSVKINLSR 153 L+ E PS LSR Sbjct: 134 LIGATTENPSFEVNSALLSR 153 >gi|218899568|ref|YP_002447979.1| ATPase, AAA family [Bacillus cereus G9842] gi|228902927|ref|ZP_04067068.1| hypothetical protein bthur0014_40950 [Bacillus thuringiensis IBL 4222] gi|218540581|gb|ACK92975.1| ATPase, AAA family [Bacillus cereus G9842] gi|228856711|gb|EEN01230.1| hypothetical protein bthur0014_40950 [Bacillus thuringiensis IBL 4222] Length = 428 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + +TDEA S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYAVTITDEALHHFTNASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|159042869|ref|YP_001531663.1| recombination factor protein RarA [Dinoroseobacter shibae DFL 12] gi|157910629|gb|ABV92062.1| AAA ATPase central domain protein [Dinoroseobacter shibae DFL 12] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 8/134 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L E GQ A AL V+F GPPG+GKTT+A+++A E + Sbjct: 24 LRPAHLSEVIGQDHLLGPDGPL--GAMLANRALSSVIFWGPPGVGKTTIARLLAAETDLA 81 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F S P + K + A L +LF+DEIHR + ++ P MED + + Sbjct: 82 FVQISAIFTGVPDLRKVFEAARLRRQGGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTI-V 140 Query: 137 MVGEGPSARSVKIN 150 +VG S ++N Sbjct: 141 LVGATTENPSFELN 154 >gi|91216068|ref|ZP_01253036.1| putative AAA family ATPase protein [Psychroflexus torquis ATCC 700755] gi|91185585|gb|EAS71960.1| putative AAA family ATPase protein [Psychroflexus torquis ATCC 700755] Length = 425 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ Q + K + + ++ GPPG+GKTTLA ++++E + Sbjct: 9 LRPKQLSDYLSQTHLIGEKGTISQMIKR--DLIPSIILWGPPGIGKTTLANLISKETKRS 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VI KA L + +LFIDEIHR S ++ L A+E Sbjct: 67 FFTLSAISSGVKDVREVIQKAKQDQGLFE--QKNPILFIDEIHRFSKSQQDSLLGAVEKG 124 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 125 WITLIGATTENPSFEVIPALLSR 147 >gi|169771463|ref|XP_001820201.1| AAA family ATPase [Aspergillus oryzae RIB40] gi|83768060|dbj|BAE58199.1| unnamed protein product [Aspergillus oryzae] Length = 527 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 110/263 (41%), Gaps = 52/263 (19%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPRTL++ GQ V L+ IE + + ++ G PG GKTT+A+V+A +G Sbjct: 120 MRPRTLDDVCGQDLVGPHGVLRGLIEHDRVPS-----MILWGGPGTGKTTIARVIASMVG 174 Query: 80 VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F ++SG K D + L + ++F DEIHR S +++ +E Q Sbjct: 175 SRFVEINSTSSGVAECKKIFSDAKSELNLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 234 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + L+ E PS + LSR FTL T ED+ Sbjct: 235 VTLIGATTENPSFKVQNALLSRCRTFTLTKLTD------------------------EDV 270 Query: 189 KTIVQRGAKLTG------LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 K+I+ R ++ G V DE +A S G R + LL D ++ IT Sbjct: 271 KSILDRALQVEGPNYSPSALVDDELINYLAKFSDGDARTSLNLLELAMDLSK---RPGIT 327 Query: 243 REIADAALLR-LAIDKMGFDQLD 264 +E +L + L D+ G D Sbjct: 328 KEELKRSLTKTLVYDRAGDQHYD 350 >gi|254427548|ref|ZP_05041255.1| ATPase, AAA family, putative [Alcanivorax sp. DG881] gi|196193717|gb|EDX88676.1| ATPase, AAA family, putative [Alcanivorax sp. DG881] Length = 443 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 16/164 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+++ GQ K +A R + L ++ GPPG GKTTLA ++A+ + Sbjct: 20 LRPAHLDDYVGQQHLVGEGKPLRQALD-RGQ-LHSMILWGPPGTGKTTLALIMAQTVDAA 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V++ D+ A + + R VLF+DE+HR + ++ P +E+ + Sbjct: 78 FITLSA-VLSGVKDIRAAVEQAQIRLGQGRRTVLFVDEVHRFNKAQQDAFLPHVEEGTIT 136 Query: 136 LM--VGEGPS-----ARSVKINLSRFTLIAATTRVGLLTNPLQD 172 + E PS A + + R +A GLL LQD Sbjct: 137 FIGATTENPSFELNNALLSRARVYRLRALAPDDLSGLLGRALQD 180 >gi|170049711|ref|XP_001858122.1| werner helicase interacting protein [Culex quinquefasciatus] gi|167871474|gb|EDS34857.1| werner helicase interacting protein [Culex quinquefasciatus] Length = 529 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 22/161 (13%) Query: 14 QEDADISL---LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGK 67 +ED+ + L +RP L ++ GQ + L+ E+ ++ ++F GPPG GK Sbjct: 124 KEDSQVPLAEKMRPVELTDYIGQEQIIGKNTVLRTLFES-----NSIPSMIFWGPPGCGK 178 Query: 68 TTLAQVVARELG-------VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 TTLA ++A V +T V + +A +A + + +LF+DEIHR + Sbjct: 179 TTLAHIIAAHCKKHENMRFVKLSATMSGVNDVKEAVKVAKNELKFKRKTILFMDEIHRFN 238 Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 + ++I P +E + L+ E PS LSR +I Sbjct: 239 KLQQDIFLPHVESGTVTLLGATTENPSFSLNSALLSRCRVI 279 >gi|319787147|ref|YP_004146622.1| ATPase AAA [Pseudoxanthomonas suwonensis 11-1] gi|317465659|gb|ADV27391.1| AAA ATPase central domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 21/121 (17%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ + S L+ +E + + ++ GPPG GKTTL+ ++A+ Sbjct: 8 MRPRSLDEMVGQRRLLAPGSALRRAVEGGRVHS-----MILWGPPGCGKTTLSLLLAQYA 62 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 FR+ S V+A+AG + R VLF+DE+HR + ++ P + Sbjct: 63 DAEFRAISAVLSGLPEVRQVLAEAGQ----RFDAGRRTVLFVDEVHRFNKTQQDAFLPHI 118 Query: 130 E 130 E Sbjct: 119 E 119 >gi|257462974|ref|ZP_05627378.1| recombination factor protein RarA [Fusobacterium sp. D12] gi|317060591|ref|ZP_07925076.1| recombination factor protein RarA [Fusobacterium sp. D12] gi|313686267|gb|EFS23102.1| recombination factor protein RarA [Fusobacterium sp. D12] Length = 410 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 48/228 (21%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L+E GQ L+ IE L + +F GPPG GK++L ++++ + Sbjct: 18 LRPQSLDEIFGQENLLGKHGVLRKLIEKG-----TLTNSIFFGPPGCGKSSLGEIISHTM 72 Query: 79 GVNFRSTSGPVIAKAGDLAALL----TNLE---DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A D+ ++ N+E + +LF+DEIHR + + ++ L ED Sbjct: 73 DCAFESLNA-TTASLQDIKEVVGKAKRNIEYYQKKTILFLDEIHRFNKLQQDALLSYCED 131 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLK 189 F LI ATT L N L R + E + ++ Sbjct: 132 --------------------GTFILIGATTENPYYSLNNALLSRVMV-FEFKALEKQAIQ 170 Query: 190 TIVQRGAKLTGLAVT---DEAACEIAMRSRGTPRIAGR---LLRRVRD 231 I+ R + TG++++ ++ E+A +G R+A L + V+D Sbjct: 171 QILTRAQQKTGISLSPFLEDVMVEMA---QGDSRVALNYLELYQNVKD 215 >gi|309973263|gb|ADO96464.1| Recombination factor RarA [Haemophilus influenzae R2846] Length = 446 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 TSG + A L DR +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|296197533|ref|XP_002746324.1| PREDICTED: ATPase WRNIP1-like isoform 3 [Callithrix jacchus] Length = 620 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 232 MRPDTLQDYFGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 286 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 287 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 345 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 346 VECGTITLIGATTENPSFQVNAALLSRCRVI 376 >gi|251798346|ref|YP_003013077.1| ATPase AAA [Paenibacillus sp. JDR-2] gi|247545972|gb|ACT02991.1| AAA ATPase central domain protein [Paenibacillus sp. JDR-2] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+++ GQ K+ A + + + +L GPPG GKTTLA ++++ Sbjct: 21 MRPETLDDYIGQEHIIGAGKLLRRAIEG--DQVSSILLYGPPGCGKTTLANIISKRTAGE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAME 130 F + V A D+ ++ + + +LF+DE+HR + ++ L PA+E Sbjct: 79 FVKLNA-VDASVKDVREVIDTAKTNKLMYGKKTILFLDEVHRFNTSRQDALLPAVE 133 >gi|325568303|ref|ZP_08144670.1| replication-associated recombination protein A [Enterococcus casseliflavus ATCC 12755] gi|325158072|gb|EGC70225.1| replication-associated recombination protein A [Enterococcus casseliflavus ATCC 12755] Length = 425 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRNLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTRYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DE+HRL ++ L P +E ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|197334410|ref|YP_002155669.1| ATPase, AAA family [Vibrio fischeri MJ11] gi|197315900|gb|ACH65347.1| ATPase, AAA family [Vibrio fischeri MJ11] Length = 448 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 45/231 (19%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+ +E++ GQ L+ +EA + + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQNIEQYIGQQHLLGVGKPLRRALEAGQ-----IHSMILWGPPGTGKTTLAEVAANYA 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 S V + D+ A + ++ R ++F+DE+HR + ++ P +ED Sbjct: 76 NAEVERVSA-VTSGVKDIRAAIEKAKENQITGRRTIMFVDEVHRFNKSQQDAFLPHIED- 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKT 190 T I ATT L N L R + +L E ED+ Sbjct: 134 -------------------GTITFIGATTENPSFELNNALLSRARV-YKLKSLEKEDIVQ 173 Query: 191 IV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 ++ RG + D+ ++A G R++ L + D AE Sbjct: 174 VIDQALLDKDRGLNDENFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAE 224 >gi|145641740|ref|ZP_01797316.1| formyltetrahydrofolate deformylase [Haemophilus influenzae R3021] gi|145273554|gb|EDK13424.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.4-21] Length = 446 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 TSG + A L DR +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|145632980|ref|ZP_01788713.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 3655] gi|144986636|gb|EDJ93202.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 3655] Length = 446 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A D A + + +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|167837525|ref|ZP_02464408.1| recombination factor protein RarA [Burkholderia thailandensis MSMB43] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 135/326 (41%), Gaps = 58/326 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ LK+ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLADVIGQTHLLGEGKPLKLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + +D +L+ + Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 171 Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 ++R L GLA +A + + G R LL + + A A TI DAA Sbjct: 172 LKRAQDTALDGLAFDGKAVDTLVGYADGDARRFLNLLEQAQTAATSAGVTTI-----DAA 226 Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 + A +TM AR F GG + ISA R + D ++ + Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273 Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332 P+ R ++ +AW+ +G+ P Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299 >gi|115391273|ref|XP_001213141.1| hypothetical protein ATEG_03963 [Aspergillus terreus NIH2624] gi|114194065|gb|EAU35765.1| hypothetical protein ATEG_03963 [Aspergillus terreus NIH2624] Length = 531 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 109/263 (41%), Gaps = 52/263 (19%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPRTL+E GQ N L+ IE + + ++ G PG GKTT+A+V+A +G Sbjct: 126 MRPRTLDEVCGQDLVGPNGVLRGLIEQDR-----VPSMVLWGGPGTGKTTIARVIASMVG 180 Query: 80 VNF---RSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F STS V A + L + ++F DEIHR S +++ +E Q Sbjct: 181 SRFVEINSTSTGVAECKKIFAEAKSELGLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 240 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + L+ E PS + LSR FTL T ED+ Sbjct: 241 VTLIGATTENPSFKVQSALLSRCRTFTLAKLTD------------------------EDV 276 Query: 189 KTIVQRGAKLTG------LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 K+I+ R ++ G V DE +A S G R + LL D ++ IT Sbjct: 277 KSILNRALQVEGPNYSPSALVDDELITYLAKFSDGDARTSLNLLELAMDLSK---RPDIT 333 Query: 243 REIADAALLR-LAIDKMGFDQLD 264 +E +L + L D+ G D Sbjct: 334 KEELKRSLTKTLVYDRAGDQHYD 356 >gi|229163348|ref|ZP_04291300.1| hypothetical protein bcere0009_41140 [Bacillus cereus R309803] gi|228620129|gb|EEK77003.1| hypothetical protein bcere0009_41140 [Bacillus cereus R309803] Length = 428 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 104/250 (41%), Gaps = 21/250 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L L +G Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTL-IG 124 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 S IN + I + ++ L +D I ++L +ED ++G Sbjct: 125 ATTSNPFHAIN----SAIRSRCQIFELHALTEDDLLIGLKL---ALED----KEKGLGEY 173 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITREIADAALLRLAI-- 255 + VT EA A S G R A L + F A IT EIA+ L + + Sbjct: 174 NVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECLQKKSFVH 233 Query: 256 DKMGFDQLDL 265 DK G D+ Sbjct: 234 DKGGDAHYDV 243 >gi|145627717|ref|ZP_01783518.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.1-21] gi|145639902|ref|ZP_01795502.1| formyltetrahydrofolate deformylase [Haemophilus influenzae PittII] gi|144979492|gb|EDJ89151.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.1-21] gi|145270993|gb|EDK10910.1| formyltetrahydrofolate deformylase [Haemophilus influenzae PittII] gi|309751081|gb|ADO81065.1| Recombination factor RarA [Haemophilus influenzae R2866] Length = 446 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A D A + + +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM 11486] gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM 11486] Length = 325 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPRTL+E Q E + LK F+ + + H+LF GPPG GKTT+A +A +L G N Sbjct: 13 RPRTLDEVVNQSEIVARLKKFVSD-----KNMPHMLFAGPPGTGKTTMAHCLAHDLYGDN 67 Query: 82 FRS 84 +R Sbjct: 68 YRQ 70 >gi|125622982|ref|YP_001031465.1| recombination factor protein RarA [Lactococcus lactis subsp. cremoris MG1363] gi|124491790|emb|CAL96710.1| chromosome segregation helicase [Lactococcus lactis subsp. cremoris MG1363] gi|300069723|gb|ADJ59123.1| recombination factor protein RarA [Lactococcus lactis subsp. cremoris NZ9000] Length = 419 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR ++E GQ K+ + + L ++ GPPG+GKT++A +A + + Sbjct: 9 MRPRNIDEIVGQRHLVGKGKIIRRMVET--QLLSSMILYGPPGIGKTSIASAIAGTMNIA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + IA + + L VL +DEIHRL ++ L P +E+ Q Sbjct: 67 FRTFNATTDTKKRLQEIASEAEFSGQL-------VLLLDEIHRLDKPKQDFLLPLLENGQ 119 Query: 134 LDLM 137 + L+ Sbjct: 120 IILI 123 >gi|109069425|ref|XP_001090684.1| PREDICTED: ATPase WRNIP1 isoform 3 [Macaca mulatta] Length = 665 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 231 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 285 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375 >gi|326772947|ref|ZP_08232231.1| ATPase, AAA family [Actinomyces viscosus C505] gi|326637579|gb|EGE38481.1| ATPase, AAA family [Actinomyces viscosus C505] Length = 477 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 19/148 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L++ GQ + ++ L + + + L ++ GPPG GKTT+A+++A Sbjct: 36 LRPRALDDVVGQDQLLADDAPLGRMVASGR-----LSSIILWGPPGCGKTTIARLLADRT 90 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + DL + T R +LF+DEIHR + ++ P +ED Sbjct: 91 GLVFEQVSA-TFSGVADLRKVFTAAARRREIGQGTLLFVDEIHRFNRAQQDSFLPYVEDG 149 Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157 + ++VG S ++N LSR ++ Sbjct: 150 TV-VLVGATTENPSFELNGALLSRCQVM 176 >gi|325927614|ref|ZP_08188843.1| Recombination protein MgsA [Xanthomonas perforans 91-118] gi|325541981|gb|EGD13494.1| Recombination protein MgsA [Xanthomonas perforans 91-118] Length = 457 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 29 MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F++ S V++ ++ +L R VLF+DE+HR + ++ P +E Sbjct: 84 DAEFKAISA-VLSGLPEVRQVLAGAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERG 142 Query: 133 QLDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 143 TI-LFVGATTENPSFELN 159 >gi|301170352|emb|CBW29958.1| recombination protein [Haemophilus influenzae 10810] Length = 446 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A D A + + +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|296197529|ref|XP_002746322.1| PREDICTED: ATPase WRNIP1-like isoform 1 [Callithrix jacchus] Length = 666 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 232 MRPDTLQDYFGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 286 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 287 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 345 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 346 VECGTITLIGATTENPSFQVNAALLSRCRVI 376 >gi|257866969|ref|ZP_05646622.1| AAA ATPase [Enterococcus casseliflavus EC30] gi|257873303|ref|ZP_05652956.1| AAA ATPase [Enterococcus casseliflavus EC10] gi|257801025|gb|EEV29955.1| AAA ATPase [Enterococcus casseliflavus EC30] gi|257807467|gb|EEV36289.1| AAA ATPase [Enterococcus casseliflavus EC10] Length = 425 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRNLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTRYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DE+HRL ++ L P +E ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|134094254|ref|YP_001099329.1| recombination factor protein RarA [Herminiimonas arsenicoxydans] gi|133738157|emb|CAL61202.1| ATPase, AAA family protein [Herminiimonas arsenicoxydans] Length = 430 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL+E GQ + A L+V E+ + + ++ GPPG+GKTTLA+++A Sbjct: 10 LRPHTLDEVIGQQHILGAGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMADSF 64 Query: 79 GVNFRSTSGPVIAKAGDL-----AALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAME 130 +F + S V++ D+ A L+ ++ R +LF+DE+HR + ++ P +E Sbjct: 65 NADFIALSA-VLSGVKDIRDAVERAQLSRGAMDRRTILFVDEVHRFNKSQQDAFLPHVE 122 >gi|323466477|gb|ADX70164.1| Helicase subunit of the Holliday junction resolvase related ATPase [Lactobacillus helveticus H10] Length = 424 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 5/119 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL+E GQ E K + + ++ GPPG GK++LAQ++A++ Sbjct: 15 MRPQTLDEVVGQQELLGEDKPLRRIIEQKVNI--SLILWGPPGTGKSSLAQIIAKQFDYP 72 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + + K G L + + VL IDEIHR++ +++ L P +E+ + L+VG Sbjct: 73 LAKFNASIDNK-GKLDQFIKTYPYQPFVLLIDEIHRMTKNLQDFLLPYLENGHI-LLVG 129 >gi|311742339|ref|ZP_07716148.1| replication-associated recombination protein A [Aeromicrobium marinum DSM 15272] gi|311313967|gb|EFQ83875.1| replication-associated recombination protein A [Aeromicrobium marinum DSM 15272] Length = 455 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 19/127 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + A S L+ I+ + ++ GPPG GKTT+A +++ Sbjct: 39 MRPRTLDELVGQERLLAAGSPLRQMIDGDQPLT-----IILWGPPGTGKTTIASLISAHT 93 Query: 79 GVNFRSTSGPVIAK--------AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F S V A AG AL +E VLF+DE+HR S ++ L P +E Sbjct: 94 DRRFVEVSA-VSAGVKEVRDVIAGARRALTNGVET--VLFVDEVHRFSKSQQDALLPGVE 150 Query: 131 DFQLDLM 137 + + L+ Sbjct: 151 NRWVSLV 157 >gi|320333638|ref|YP_004170349.1| AAA ATPase central domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754927|gb|ADV66684.1| AAA ATPase central domain protein [Deinococcus maricopensis DSM 21211] Length = 438 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LRPRT+EE GQ + A R L ++ GPPG+GKTTLA+++AR + Sbjct: 14 LRPRTIEEVVGQRHLLGPGRPLTRTLASGR---LGSLILWGPPGVGKTTLARLLARAVDA 70 Query: 81 NFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 +F + S V A D+ A R +LF+DEIHR + ++ L P +E L Sbjct: 71 HFIALSA-VSAGVKDIREAVGEAERERGRGRRTLLFLDEIHRFNKAQQDALLPHVESGLL 129 Query: 135 DLMVGEGPSARSVKINL-----SRFTLIAATTRV---GLLTNPLQDRFGIP 177 L +G S ++N +R ++ A T GLL L D G+P Sbjct: 130 TL-IGATTENPSFEVNPALRSRARTLVLEALTPEDIRGLLERALADERGLP 179 >gi|229845598|ref|ZP_04465724.1| recombination factor protein RarA [Haemophilus influenzae 6P18H1] gi|229811465|gb|EEP47168.1| recombination factor protein RarA [Haemophilus influenzae 6P18H1] Length = 446 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A D A + + +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|323339472|ref|ZP_08079751.1| AAA family ATPase [Lactobacillus ruminis ATCC 25644] gi|323093086|gb|EFZ35679.1| AAA family ATPase [Lactobacillus ruminis ATCC 25644] Length = 424 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 41/215 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ ++E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 8 MRPKDIDEIVGQRHLVGEGKIIRRMVQAKL--LSSMILYGPPGTGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + AL + +L +DEIHRL+ ++ L P +E Sbjct: 66 FRILNAATDSKKELEQVALEAKMSGTVILMLDEIHRLTKPKQDFLLPMLES--------- 116 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLT-NPLQDRFGIPIRLNFYEI-----EDLKTIV-- 192 + LI ATT ++ NP I R +E+ ED+KT + Sbjct: 117 -----------GKIILIGATTENPYISINP-----AIRSRTQIFEVQKLSEEDIKTAINR 160 Query: 193 -----QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 +RG + + D+A +A + G R A Sbjct: 161 ALQDDERGLGKYHVVLDDDAMIHLARATNGDLRSA 195 >gi|194037953|ref|XP_001924550.1| PREDICTED: ATPase WRNIP1 [Sus scrofa] Length = 503 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 LRP L++F GQ A L+ +EA + + ++ GPPG GKTTLA ++A Sbjct: 69 LRPDALQDFVGQGRAVGPETLLRSLLEANE-----VPSLILWGPPGCGKTTLAHIIANNS 123 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 124 KKHSIRFVTLSA-TSAKTTDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 182 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 183 VECGTITLIGATTENPSFQVNAALLSRCRVI 213 >gi|329117114|ref|ZP_08245831.1| ATPase, AAA family [Streptococcus parauberis NCFD 2020] gi|326907519|gb|EGE54433.1| ATPase, AAA family [Streptococcus parauberis NCFD 2020] Length = 423 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRT+ E GQ K+ A L ++ GPPG+GKT++A +A Sbjct: 9 LRPRTISEVIGQKHLVGEGKIIRRMVDANM--LSSMILFGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + V IA+ + L VL +DEIHRL ++ L P +E+ Sbjct: 67 FRTFNATVDTKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKTKQDFLLPLLENGN 119 Query: 134 LDLMVG 139 + +M+G Sbjct: 120 I-IMIG 124 >gi|257877045|ref|ZP_05656698.1| AAA ATPase [Enterococcus casseliflavus EC20] gi|257811211|gb|EEV40031.1| AAA ATPase [Enterococcus casseliflavus EC20] Length = 425 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRNLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTRYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DE+HRL ++ L P +E ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|329769837|ref|ZP_08261237.1| hypothetical protein HMPREF0433_01001 [Gemella sanguinis M325] gi|328838013|gb|EGF87635.1| hypothetical protein HMPREF0433_01001 [Gemella sanguinis M325] Length = 415 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 5/114 (4%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I+ LRP+ +++ GQ KV + ++ + +L+ GPPG GKT++A +A EL Sbjct: 5 INRLRPKKIDDIIGQHHLIGENKVLTKIVTSK-KMFSFILY-GPPGTGKTSIANALANEL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAME 130 F+ + V DL ++ + + +L +DE HRL+ +++IL P +E Sbjct: 63 DYKFKILNA-VNCTKKDLTTVIEESKRFKKVILLLDEFHRLTKPMQDILLPEIE 115 >gi|59711514|ref|YP_204290.1| recombination factor protein RarA [Vibrio fischeri ES114] gi|59479615|gb|AAW85402.1| recombination protein [Vibrio fischeri ES114] Length = 448 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 45/231 (19%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+ +E++ GQ L+ +EA + + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQNIEQYIGQQHLLGVGKPLRRALEAGQ-----IHSMILWGPPGTGKTTLAEVAANYA 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 S V + D+ A + ++ R ++F+DE+HR + ++ P +ED Sbjct: 76 NAEVERVSA-VTSGVKDIRAAIEKAKENQITGRRTIMFVDEVHRFNKSQQDAFLPHIED- 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKT 190 T I ATT L N L R + +L E ED+ Sbjct: 134 -------------------GTITFIGATTENPSFELNNALLSRARV-YKLKSLEKEDIVQ 173 Query: 191 IV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 ++ RG + D+ ++A G R++ L + D AE Sbjct: 174 VIDQALLDKDRGLNDENFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAE 224 >gi|49474377|ref|YP_032419.1| recombination factor protein RarA [Bartonella quintana str. Toulouse] gi|49239881|emb|CAF26279.1| ATPase, aaa family [Bartonella quintana str. Toulouse] Length = 439 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 37/244 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L++ TGQ + + A ++ ++F GPPG GKTT+A+++A E Sbjct: 24 MRPRSLKDVTGQNHLLGEKGLL--SRMVVAGSIGSMIFWGPPGTGKTTVARLLALEKEFA 81 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDV------LFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + +L + + R + LF+DEIHR + ++ P MED + Sbjct: 82 FEQVSA-IFTGVSELKKIFEVAQARFMSGCKMLLFVDEIHRFNRAQQDSFLPFMEDGTV- 139 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N A +R +LT D E L +++R Sbjct: 140 ILIGATTENPSFELN------AALLSRARVLTFLPHDN------------ESLSMLLKRA 181 Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 K+ G L + D+A + S G R A L V A+ EI DA L+ Sbjct: 182 EKVEGKILPLDDDARDVLIGMSDGDARAALTLAEEVWSVAQPG-------EIFDAGTLQK 234 Query: 254 AIDK 257 I + Sbjct: 235 IIQR 238 >gi|319776484|ref|YP_004138972.1| ATPase [Haemophilus influenzae F3047] gi|319897261|ref|YP_004135456.1| atpase [Haemophilus influenzae F3031] gi|317432765|emb|CBY81130.1| predicted ATPase [Haemophilus influenzae F3031] gi|317451075|emb|CBY87308.1| predicted ATPase [Haemophilus influenzae F3047] Length = 446 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTNLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 TSG + A L DR +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIDRAKQNRLSDRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|225010505|ref|ZP_03700976.1| AAA ATPase central domain protein [Flavobacteria bacterium MS024-3C] gi|225005334|gb|EEG43285.1| AAA ATPase central domain protein [Flavobacteria bacterium MS024-3C] Length = 425 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 15/133 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++LE + Q V + KA + ++ GPPG GKTTLA ++A + Sbjct: 9 VRPKSLEGYMSQTHLVGPAGVLTKQIKAGI--IPSIILWGPPGTGKTTLANIIAAQTERP 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S VI KA L T +LFIDEIHR S ++ L A+E Sbjct: 67 FYALSAINSGVKEVREVIEKAKQSGGLFTT--KNPLLFIDEIHRFSKSQQDSLLAAVEKG 124 Query: 133 QLDLM--VGEGPS 143 + L+ E PS Sbjct: 125 WVTLIGATTENPS 137 >gi|209884845|ref|YP_002288702.1| AAA ATPase, central region [Oligotropha carboxidovorans OM5] gi|209873041|gb|ACI92837.1| AAA ATPase, central region [Oligotropha carboxidovorans OM5] Length = 443 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L + GQ + R L ++F GPPG GKTT+A+++A ++ Sbjct: 30 LRPRQLSDVVGQDHILGPDGALTRMLETRT--LGSLVFWGPPGTGKTTVARLLADATELH 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + R +LF+DE+HR + ++ P MED + Sbjct: 88 FEQISA-VFSGVADLKKVFDTARARRETGKGTLLFVDEVHRFNRAQQDSFLPVMEDGTV- 145 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 146 VLVGATTENPSFELN 160 >gi|145631003|ref|ZP_01786779.1| predicted ATPase [Haemophilus influenzae R3021] gi|144983470|gb|EDJ90946.1| predicted ATPase [Haemophilus influenzae R3021] Length = 453 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A D A + + +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|187479165|ref|YP_787190.1| recombination factor protein RarA [Bordetella avium 197N] gi|115423752|emb|CAJ50303.1| putative ATPase [Bordetella avium 197N] Length = 459 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL + GQ L+V ++ + + ++F GPPG+GKTTLA+++A Sbjct: 38 LRPRTLADVVGQSHLLGPDKPLRVAFDSGRPHS-----MIFWGPPGVGKTTLARLMADGF 92 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED- 131 +F + S V+ D+ +T + R +LF+DE+HR + ++ P +E Sbjct: 93 DAHFIAISA-VLGGVKDIRDAVTAAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVESG 151 Query: 132 -FQLDLMVGEGPSARSVKINLSR 153 F E PS LSR Sbjct: 152 LFTFIGATTENPSFEVNSALLSR 174 >gi|189036168|gb|ACD75434.1| AMDV4_5 [uncultured virus] Length = 294 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 10/118 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP+ L+E GQ + F K+ HV+F GPPG+GKTT+A +A E + Sbjct: 7 FRPQNLDEVVGQERIVT---FFRNLGKSDISKWPHVIFYGPPGVGKTTMAHAIANEYDIE 63 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 + K D+ + ++ R +LF+DE L+ + +L MED+ Sbjct: 64 IIDMNASQYRKIDDMENQIFSIVKQIPEKGARKILFMDEADALTPNSQWLLRRMMEDY 121 >gi|224045116|ref|XP_002197546.1| PREDICTED: Werner helicase interacting protein 1 [Taeniopygia guttata] Length = 632 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 LRP TL + GQ + A + L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 196 LRPDTLGSYVGQERVLGAQTLLRSLLESHE-----IPSLILWGPPGCGKTTLAHIIANSS 250 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ G+ F + S AK D+ +++ ++ + +LFIDEIHR + ++ P Sbjct: 251 KKNGMRFVTLSA-TSAKTNDVRDVISQAQNEKRLFKRKTILFIDEIHRFNKSQQDTFLPH 309 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 310 VECGTVTLIGATTENPSFQVNAALLSRCRVI 340 >gi|197104728|ref|YP_002130105.1| ATPase, AAA family [Phenylobacterium zucineum HLK1] gi|196478148|gb|ACG77676.1| ATPase, AAA family [Phenylobacterium zucineum HLK1] Length = 434 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 9/116 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ LEE GQ A+AR L ++ GPPG GKTT+A+++A+E G Sbjct: 22 LRPQRLEEVVGQDHLLGPDGPIRRMAEARR--LSSMILWGPPGTGKTTIARLLAKEAGYE 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F+ S V + DL +LF+DEIHR + ++ P +E+ Sbjct: 80 FQQLSA-VFSGVADLKKAFEQARARRAAGQATLLFVDEIHRFNRAQQDGFLPFVEE 134 >gi|186475407|ref|YP_001856877.1| recombination factor protein RarA [Burkholderia phymatum STM815] gi|184191866|gb|ACC69831.1| AAA ATPase central domain protein [Burkholderia phymatum STM815] Length = 453 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 56/232 (24%) Query: 2 MDREGLL--SRNVSQED------ADISL---LRPRTLEEFTGQVE---ACSNLKVFIEAA 47 M R+GL SR+ Q A++ L LRPRT++E GQ L+V E+ Sbjct: 1 MHRDGLYPKSRDYPQNAMFEETRANVPLAERLRPRTIDEVIGQKHLLGPNKPLRVAFESG 60 Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTN 102 +A + ++ GPPG+GKTTLA+++A F + S + I +A + A + Sbjct: 61 EAHS-----MILWGPPGVGKTTLARLMADAFHAQFIALSAVLSGVKDIREAVETAQIHRA 115 Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 + ++F+DE+HR + ++ P +E F + ATT Sbjct: 116 NGHQTLVFVDEVHRFNKSQQDAFLPHVES--------------------GLFVFVGATTE 155 Query: 163 VGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR------GAKLTGLAVTDEA 207 NP + + R + Y ++ L T QR +L GL +TDEA Sbjct: 156 -----NPSFEVNSALLSRASVYVLKSLDTDEQRELLARAQQELGGLTLTDEA 202 >gi|329298237|ref|ZP_08255573.1| recombination factor protein RarA [Plautia stali symbiont] Length = 448 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 20/167 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+++ GQ + A L IEA + L ++ GPPG GKTTLA+++A Sbjct: 21 IRPATLQQYIGQQHLLAAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAEIIAHYG 75 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A + R +LF+DE+HR + ++ P +ED Sbjct: 76 KADVERISAVTSGVKEIREAIERARQNRQVGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 135 Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATTRVGL---LTNPLQDR 173 + + E PS S ++ +R L+ + T + L +QD+ Sbjct: 136 ITFIGATTENPSFELNSALLSRARVYLLKSLTSADIEQVLDQAMQDK 182 >gi|302038840|ref|YP_003799162.1| replication-associated recombination protein A [Candidatus Nitrospira defluvii] gi|300606904|emb|CBK43237.1| Replication-associated recombination protein A [Candidatus Nitrospira defluvii] Length = 429 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 11/144 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+ ++ GQ E + A + + L V+F GPPG GKTTLA +VA+ Sbjct: 29 MRPRSFDDLVGQDEVVGPGRPLRNAIER--DQLSSVIFWGPPGCGKTTLAGLVAQHTESQ 86 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V +L ++ E R LF+DEIHR + ++ P +E + Sbjct: 87 FVPFSA-VTGGIPELREIIKAAEHRRAMGRATTLFVDEIHRFNKAQQDAFLPHVERGTVV 145 Query: 136 LM--VGEGPSARSVKINLSRFTLI 157 L+ E PS + LSR ++ Sbjct: 146 LIGATTENPSFELIAPLLSRSIVV 169 >gi|257870864|ref|ZP_05650517.1| AAA ATPase [Enterococcus gallinarum EG2] gi|257805028|gb|EEV33850.1| AAA ATPase [Enterococcus gallinarum EG2] Length = 425 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRNLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTRYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + +L +DE+HRL ++ L P +E ++ +M+G Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI-IMIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYITIN 135 >gi|225011635|ref|ZP_03702073.1| AAA ATPase central domain protein [Flavobacteria bacterium MS024-2A] gi|225004138|gb|EEG42110.1| AAA ATPase central domain protein [Flavobacteria bacterium MS024-2A] Length = 425 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 21/154 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP++L E+ GQ V +L I ++F GPPG GKTTLAQ++A E Sbjct: 9 MRPKSLGEYFGQDHLVGPKGSLTQMISNG-----VFPSLIFWGPPGTGKTTLAQLLALEK 63 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S +I+KA L + +LFIDEIHR S ++ L A+ Sbjct: 64 ERPFYQLSAINAGVKEIREIISKAEHSGGLFSG--KSPILFIDEIHRFSKSQQDSLLNAV 121 Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATT 161 E + L+ E PS + LSR + T Sbjct: 122 EKGIITLIGATTENPSFEVINALLSRCQVYVLNT 155 >gi|146416793|ref|XP_001484366.1| hypothetical protein PGUG_03747 [Meyerozyma guilliermondii ATCC 6260] Length = 572 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 23/128 (17%) Query: 21 LLRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 L+RP +L ++ GQ ++ + FI R L ++ GPPG+GKTTLA ++A+ Sbjct: 89 LVRPSSLHQYIGQNHLTNHRNGAITNFI-----RLGYLPSMILHGPPGVGKTTLASIIAK 143 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED-------------RDVLFIDEIHRLSIIVEE 123 E G S A + LL + D R +FIDEIHR S + ++ Sbjct: 144 EAGYVMVELSA-TDATVSTIRRLLNEIRDENRKRTKLGTPHLRVCVFIDEIHRFSKVQQD 202 Query: 124 ILYPAMED 131 L P +E+ Sbjct: 203 FLLPFVEE 210 >gi|228935720|ref|ZP_04098533.1| hypothetical protein bthur0009_41650 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823958|gb|EEM69777.1| hypothetical protein bthur0009_41650 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 428 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 86/330 (26%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193 TLI ATT +NP I R +E+ EDL ++ Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEEDLLIGLK 160 Query: 194 RG--AKLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 R K GL VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|262377125|ref|ZP_06070350.1| recombination factor protein RarA [Acinetobacter lwoffii SH145] gi|262307863|gb|EEY89001.1| recombination factor protein RarA [Acinetobacter lwoffii SH145] Length = 424 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 32/170 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L + GQ L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLTQIIGQEHLLGEQAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S +IA+ GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFISLSALNTGVKELREIIAEGGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQD 172 E ++ L+ E PS LSR ++A + LLT LQ+ Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYSLNALSAESIQTLLTQALQN 168 >gi|319776840|ref|YP_004136491.1| holliday junction ATP-dependent DNA helicase ruvb [Mycoplasma fermentans M64] gi|319776967|ref|YP_004136618.1| holliday junction ATP-dependent DNA helicase ruvb [Mycoplasma fermentans M64] gi|319777201|ref|YP_004136852.1| holliday junction ATP-dependent DNA helicase ruvb [Mycoplasma fermentans M64] gi|238809748|dbj|BAH69538.1| hypothetical protein [Mycoplasma fermentans PG18] gi|318037915|gb|ADV34114.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma fermentans M64] gi|318038042|gb|ADV34241.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma fermentans M64] gi|318038276|gb|ADV34475.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma fermentans M64] Length = 235 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/216 (20%), Positives = 95/216 (43%), Gaps = 7/216 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 L P +EF GQ + +L + ++ +K + +++FV P G GK +LA ++++ + Sbjct: 4 LTPINFKEFRGQKDLIKSLIILLQESKK----IPNMIFVAPKGYGKYSLANIISQFKDRS 59 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + + I +L +L NL++ +LFI++I++L ++++L+ LD + Sbjct: 60 LQPITSNNIVDEFELLNILANLKNNAILFIEDINKLKPELKKLLFDIYNSINLDKVEKIC 119 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 S + KI F++I + + + F I L Y + +L I+ T Sbjct: 120 YSNKRFKI--KNFSIIGTINSSNQIDSSKWEGFKI-FNLKKYSLNNLNQIINYNRLKTNF 176 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 + + I P I + + D+ + + Sbjct: 177 KLGNSLVEYILNNCNNNPGILNEVYLKAIDYFAIKN 212 >gi|49481747|ref|YP_038449.1| recombination factor protein RarA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196034307|ref|ZP_03101716.1| ATPase, AAA family [Bacillus cereus W] gi|196039170|ref|ZP_03106476.1| ATPase, AAA family [Bacillus cereus NVH0597-99] gi|49333303|gb|AAT63949.1| ATPase, AAA family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195992849|gb|EDX56808.1| ATPase, AAA family [Bacillus cereus W] gi|196029797|gb|EDX68398.1| ATPase, AAA family [Bacillus cereus NVH0597-99] Length = 428 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 86/330 (26%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193 TLI ATT +NP I R +E+ EDL ++ Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEEDLLIGLK 160 Query: 194 RG--AKLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 R K GL VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|50086546|ref|YP_048056.1| recombination factor protein RarA [Acinetobacter sp. ADP1] gi|49532520|emb|CAG70234.1| putative ATPase [Acinetobacter sp. ADP1] Length = 423 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 27/146 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S +IA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFVSLSALNTGVKELREIIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153 E ++ L+ E PS LSR Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSR 144 >gi|315225697|ref|ZP_07867504.1| replication-associated recombination protein A [Capnocytophaga ochracea F0287] gi|314944360|gb|EFS96402.1| replication-associated recombination protein A [Capnocytophaga ochracea F0287] Length = 426 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 21/146 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L ++ GQ V A L+ IE L +F GPPG GKTTLA ++A + Sbjct: 9 MRPTSLAQYVGQEHLVGAQGALRQQIERG-----LLPSFIFWGPPGTGKTTLANIIAHQS 63 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F + S VI ++ L T ++FIDEIHR + ++ L A+ Sbjct: 64 NRAFYTLSAISSGIKEVREVIDQSKQSGGLFTT--QNPIVFIDEIHRFNKTQQDSLLQAV 121 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153 E + L+ E PS + LSR Sbjct: 122 EKGWITLIGATTENPSFEVIPALLSR 147 >gi|295100781|emb|CBK98326.1| Recombination protein MgsA [Faecalibacterium prausnitzii L2-6] Length = 424 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 16/146 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ + +VF IE+ + + +++F GP G GKTT+A+++A Sbjct: 9 LRPKTLADVCGQQHLLAEGQVFRRTIESGR-----IPNMIFYGPSGTGKTTVARIIAENS 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133 G+ +G GD+ A+L ++ +L++DEI L+ ++ L +ED Sbjct: 64 GMTLHKLNGTSCG-TGDIKAVLKDIGTLAGAGGILLYLDEIQYLNKKQQQSLLECIEDGS 122 Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E P LSR T+ Sbjct: 123 VTLIASTTENPYFYIYNALLSRCTVF 148 >gi|291409441|ref|XP_002721014.1| PREDICTED: Werner helicase interacting protein [Oryctolagus cuniculus] Length = 589 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP +L+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 155 MRPESLQDYIGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 209 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 210 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 268 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 269 VECGTITLIGATTENPSFQVNAALLSRCRVI 299 >gi|119774909|ref|YP_927649.1| recombination factor protein RarA [Shewanella amazonensis SB2B] gi|119767409|gb|ABL99979.1| Recombination protein MgsA [Shewanella amazonensis SB2B] Length = 442 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 11/136 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++EE+ GQ K +A A + +L GPPG GKTTLA++VAR + Sbjct: 18 MRPASVEEYIGQSHLLGEGKPLRQAL--LAGKVHSMLLWGPPGTGKTTLAELVARYANAH 75 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 S V + ++ A + ++ R +LF+DE+HR + ++ P +ED + Sbjct: 76 VERISA-VTSGVKEIRAAIEQAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTV 134 Query: 135 DLMVGEGPSARSVKIN 150 + +G S ++N Sbjct: 135 -IFIGATTENPSFEVN 149 >gi|228477966|ref|ZP_04062577.1| recombination factor protein RarA [Streptococcus salivarius SK126] gi|228250146|gb|EEK09399.1| recombination factor protein RarA [Streptococcus salivarius SK126] Length = 422 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPRTISEVIGQKHLVGEGKIIRRMVEANM--LSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKAKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|238485976|ref|XP_002374226.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357] gi|220699105|gb|EED55444.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357] Length = 527 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 110/263 (41%), Gaps = 52/263 (19%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPRTL++ GQ V L+ IE + + ++ G PG GKTT+A+V+A +G Sbjct: 120 MRPRTLDDVCGQDLVGPHGVLRGLIEHDRVPS-----MILWGGPGTGKTTIARVIASMVG 174 Query: 80 VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F ++SG K D + L + ++F DEIHR S +++ +E Q Sbjct: 175 SRFVEINSTSSGVAECKKIFSDAKSELNLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 234 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + L+ E PS + LSR FTL T ED+ Sbjct: 235 VTLIGATTENPSFKVQNALLSRCRTFTLAKLTD------------------------EDV 270 Query: 189 KTIVQRGAKLTG------LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 K+I+ R ++ G V DE +A S G R + LL D ++ IT Sbjct: 271 KSILDRALQVEGPNYSPSALVDDELINYLAKFSDGDARTSLNLLELAMDLSK---RPGIT 327 Query: 243 REIADAALLR-LAIDKMGFDQLD 264 +E +L + L D+ G D Sbjct: 328 KEELKRSLTKTLVYDRAGDQHYD 350 >gi|72162480|ref|YP_290137.1| recombination factor protein RarA [Thermobifida fusca YX] gi|71916212|gb|AAZ56114.1| Recombination protein MgsA [Thermobifida fusca YX] Length = 441 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 36/130 (27%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E A +L GPPG GKTTLA VV+R Sbjct: 24 MRPRTLDEVVGQRHLLGEGSPLRRLVEDDAPMA-----LLLWGPPGTGKTTLATVVSRAT 78 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-RDV----------------LFIDEIHRLSIIV 121 F +L+A+ + ++D RDV LF+DE+HR S Sbjct: 79 RRRFV-----------ELSAVTSGVKDIRDVVDEARRELGMRGVHTLLFVDEVHRFSKTQ 127 Query: 122 EEILYPAMED 131 ++ L PA+E+ Sbjct: 128 QDALLPAVEN 137 >gi|167464003|ref|ZP_02329092.1| recombination factor protein RarA [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382959|ref|ZP_08056791.1| RarA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153079|gb|EFX45537.1| RarA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 434 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 14/118 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+E+ GQ K+ A +A + + +L GPPG GKTTLA ++++ Sbjct: 21 MRPTGLDEYIGQEHIVGPGKLLRRAIEA--DQVTSILLYGPPGTGKTTLANIISKRTQGQ 78 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + VI +A AL + +LF+DE+HR + ++ L PA+E Sbjct: 79 FVKLNAVDASVKDVREVIEQAKQTKALYGR---KTILFLDEVHRFNSARQDALLPAVE 133 >gi|261344311|ref|ZP_05971955.1| replication-associated recombination protein A [Providencia rustigianii DSM 4541] gi|282567915|gb|EFB73450.1| replication-associated recombination protein A [Providencia rustigianii DSM 4541] Length = 447 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 11/147 (7%) Query: 6 GLLSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 G LS + SQ + + +RP +LE++ GQ + K A KA L ++ GPP Sbjct: 2 GNLSLDFSQNEFQPLAARMRPESLEQYIGQKHLLAQGKPLPRAIKA--GHLHSMILWGPP 59 Query: 64 GLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 G GKTTLA+++ + TSG I ++ + A + R +LF+DE+HR + Sbjct: 60 GTGKTTLAEIIGHYAQADIERLSAVTSGIKEIRESIEKARQNLSAGRRTILFVDEVHRFN 119 Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPS 143 ++ P +ED + + E PS Sbjct: 120 KSQQDAFLPHIEDGTITFIGATTENPS 146 >gi|319638052|ref|ZP_07992816.1| hypothetical protein HMPREF0604_00439 [Neisseria mucosa C102] gi|317400697|gb|EFV81354.1| hypothetical protein HMPREF0604_00439 [Neisseria mucosa C102] Length = 435 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHSLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V + D+ + E +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSA-VFSGVKDIREAIEKAEIALQQGQATILFVDEVHRFNKAQQDAFLPYVESG 130 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153 >gi|323135882|ref|ZP_08070965.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242] gi|322398973|gb|EFY01492.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242] Length = 436 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP L+E GQ EAA R A +L ++F GPPG GKTT+A+++A E Sbjct: 22 LRPARLDEVAGQDHLLGP-----EAALTRLIRAGSLGSLIFWGPPGTGKTTVARLLAHET 76 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + F S + K D A +LF+DEIHR + ++ P MED Sbjct: 77 KLAFVQISAIFSGVADLKKTFDAARARRAAGQGTLLFVDEIHRFNRAQQDSFLPVMEDGT 136 Query: 134 LDLM--VGEGPS 143 + L+ E PS Sbjct: 137 ITLIGATTENPS 148 >gi|291616896|ref|YP_003519638.1| YcaJ [Pantoea ananatis LMG 20103] gi|291151926|gb|ADD76510.1| YcaJ [Pantoea ananatis LMG 20103] Length = 455 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 17/150 (11%) Query: 6 GLLSRNVSQEDAD--ISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFV 60 G LS + S ED + +RP TL+ + GQ + A L IEA L ++ Sbjct: 10 GNLSLDFSSEDFKPLAARMRPETLKHYIGQQHLLAAGKPLPRAIEAGH-----LHSMILW 64 Query: 61 GPPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIH 115 GPPG GKTTLA+++A + TSG I +A + A L R +LF+DE+H Sbjct: 65 GPPGTGKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERARLSKQAGRRTILFVDEVH 124 Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPS 143 R + L A ED + + E PS Sbjct: 125 RFNKKSAGCLPAAHEDGTITFIGATTENPS 154 >gi|163786201|ref|ZP_02180649.1| ATPase, AAA family protein [Flavobacteriales bacterium ALC-1] gi|159878061|gb|EDP72117.1| ATPase, AAA family protein [Flavobacteriales bacterium ALC-1] Length = 425 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 18/151 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L ++ Q + + K+ + ++ GPPG+GKTTLA ++A E Sbjct: 9 LRPKILNDYLSQQHLVGKDGMLYQQIKSGV--IPSLILWGPPGIGKTTLANIIANESERP 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S VI KA L T +LFIDEIHR S ++ L A+E Sbjct: 67 FFKLSAINSGVKDIREVIDKAKKSGGLFT--AKNPILFIDEIHRFSKSQQDSLLEAVEKG 124 Query: 133 QLDLM--VGEGPSARSVKINLSR---FTLIA 158 + L+ E PS + LSR +TL A Sbjct: 125 WVTLIGATTENPSFEVISALLSRCQVYTLNA 155 >gi|33239543|ref|NP_874485.1| recombination factor protein RarA [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237068|gb|AAP99137.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 446 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 16/120 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP ++EF GQ + ++ A +A + + +++F GPPG+GKTTLA+++A N Sbjct: 24 LRPTKIDEFVGQDAILAEGRLLRRAIEA--DRVGNLIFHGPPGVGKTTLAKIIA----AN 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLED----------RDVLFIDEIHRLSIIVEEILYPAMED 131 RS + A + + +ED + +LF+DE+HR + ++ L P +E+ Sbjct: 78 TRSYFSVLNAVLVGVKEIRKEVEDARERLGRYGLKTILFLDEVHRFNSAQQDALLPWVEN 137 >gi|329123991|ref|ZP_08252538.1| replication-associated recombination protein A [Haemophilus aegyptius ATCC 11116] gi|327467416|gb|EGF12914.1| replication-associated recombination protein A [Haemophilus aegyptius ATCC 11116] Length = 446 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTNLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 TSG + A L DR +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|150401734|ref|YP_001325500.1| replication factor C small subunit [Methanococcus aeolicus Nankai-3] gi|150014437|gb|ABR56888.1| Replication factor C [Methanococcus aeolicus Nankai-3] Length = 940 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+TL E TG + LK ++E E+L H+LF GPPGLGKTT A +A++L Sbjct: 6 VEKYRPKTLNEITGHDAIITRLKNYVEK-----ESLPHMLFSGPPGLGKTTSALCLAKDL 60 >gi|30264469|ref|NP_846846.1| recombination factor protein RarA [Bacillus anthracis str. Ames] gi|47529927|ref|YP_021276.1| recombination factor protein RarA [Bacillus anthracis str. 'Ames Ancestor'] gi|49187290|ref|YP_030542.1| recombination factor protein RarA [Bacillus anthracis str. Sterne] gi|65321766|ref|ZP_00394725.1| COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [Bacillus anthracis str. A2012] gi|167636495|ref|ZP_02394792.1| ATPase, AAA family [Bacillus anthracis str. A0442] gi|167638625|ref|ZP_02396901.1| ATPase, AAA family [Bacillus anthracis str. A0193] gi|170689631|ref|ZP_02880813.1| ATPase, AAA family [Bacillus anthracis str. A0465] gi|177653256|ref|ZP_02935508.1| ATPase, AAA family [Bacillus anthracis str. A0174] gi|190566921|ref|ZP_03019837.1| ATPase, AAA family [Bacillus anthracis Tsiankovskii-I] gi|227817178|ref|YP_002817187.1| ATPase, AAA family [Bacillus anthracis str. CDC 684] gi|229603735|ref|YP_002868686.1| ATPase, AAA family [Bacillus anthracis str. A0248] gi|254684155|ref|ZP_05148015.1| recombination factor protein RarA [Bacillus anthracis str. CNEVA-9066] gi|254724674|ref|ZP_05186457.1| recombination factor protein RarA [Bacillus anthracis str. A1055] gi|254736502|ref|ZP_05194208.1| recombination factor protein RarA [Bacillus anthracis str. Western North America USA6153] gi|254741540|ref|ZP_05199227.1| recombination factor protein RarA [Bacillus anthracis str. Kruger B] gi|254751361|ref|ZP_05203398.1| recombination factor protein RarA [Bacillus anthracis str. Vollum] gi|254757693|ref|ZP_05209720.1| recombination factor protein RarA [Bacillus anthracis str. Australia 94] gi|30259127|gb|AAP28332.1| ATPase, AAA family [Bacillus anthracis str. Ames] gi|47505075|gb|AAT33751.1| ATPase, AAA family [Bacillus anthracis str. 'Ames Ancestor'] gi|49181217|gb|AAT56593.1| ATPase, AAA family [Bacillus anthracis str. Sterne] gi|167513473|gb|EDR88843.1| ATPase, AAA family [Bacillus anthracis str. A0193] gi|167528088|gb|EDR90885.1| ATPase, AAA family [Bacillus anthracis str. A0442] gi|170666401|gb|EDT17182.1| ATPase, AAA family [Bacillus anthracis str. A0465] gi|172081538|gb|EDT66610.1| ATPase, AAA family [Bacillus anthracis str. A0174] gi|190561912|gb|EDV15881.1| ATPase, AAA family [Bacillus anthracis Tsiankovskii-I] gi|227006926|gb|ACP16669.1| ATPase, AAA family [Bacillus anthracis str. CDC 684] gi|229268143|gb|ACQ49780.1| ATPase, AAA family [Bacillus anthracis str. A0248] Length = 428 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 86/330 (26%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEVIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193 TLI ATT +NP I R +E+ EDL ++ Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEEDLLIGLK 160 Query: 194 RG--AKLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 R K GL VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|238809646|dbj|BAH69436.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 225 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 9/109 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL++ GQ S LK E K +A +F G G GK++ A +A +L + Sbjct: 8 IRPRTLDDIVGQKHVVSLLK---EIVKNKAST--SFIFFGESGTGKSSAAVALANDLKLK 62 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + G A + L+ ++ D++ IDEIHRL+ ++IL +E Sbjct: 63 Y----GYFNATINNKDELVNTIQTNDIIIIDEIHRLNKDKQDILLSYLE 107 >gi|332288542|ref|YP_004419394.1| recombination factor protein RarA [Gallibacterium anatis UMN179] gi|330431438|gb|AEC16497.1| recombination factor protein RarA [Gallibacterium anatis UMN179] Length = 445 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 120/266 (45%), Gaps = 41/266 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79 +RP +L+ + GQ S K +A ++ + ++F GPPG GKTTLA+++A L Sbjct: 20 MRPTSLDNYFGQSHLVSKGKPLRKAIESGN--IHSMIFWGPPGTGKTTLAEIIAHRLNAK 77 Query: 80 VNFRS--TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 V + S TSG I +A + A + +LF+DE+HR + ++ P +ED + + Sbjct: 78 VEYLSAVTSGVKEIREAIERAKQNQFAGQQTLLFVDEVHRFNKSQQDAFLPYIEDGTI-I 136 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-EDLKTIVQRG 195 +G S ++N + + + RV LL + LN EI E L+ +Q Sbjct: 137 FIGATTENPSFELN----SALLSRARVYLLKS-----------LNIDEIVEVLQRALQDK 181 Query: 196 AKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKTITREIADAALL 251 G + + D +A G R+A L + D A E K +T++ Sbjct: 182 QFGYGNQIINLEDGLLAMLAEYVNGDARLALNCLELMVDMAEETPKGKLLTKQ------- 234 Query: 252 RLAIDKMG-----FDQLDLRYLTMIA 272 L +D +G FD+ RY +I+ Sbjct: 235 -LLVDTLGERQAHFDKQGDRYYDLIS 259 >gi|229175073|ref|ZP_04302591.1| hypothetical protein bcere0006_41550 [Bacillus cereus MM3] gi|228608441|gb|EEK65745.1| hypothetical protein bcere0006_41550 [Bacillus cereus MM3] Length = 428 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTSEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|168308459|ref|ZP_02691134.1| ATPase, AAA family [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902652|gb|EDT48941.1| ATPase, AAA family [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 408 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 3/84 (3%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDE 113 +++F GPPG+GK++LA+V+A++L V F + PV+ L ++ D + ++ IDE Sbjct: 42 NLIFYGPPGVGKSSLAKVLAQDLKVPF-AFFNPVVDSKKQLMQIIEQALDLNNFIIIIDE 100 Query: 114 IHRLSIIVEEILYPAMEDFQLDLM 137 IHRL+ ++IL P +E ++ L Sbjct: 101 IHRLNKDKQDILLPIIEANKIKLF 124 >gi|68249823|ref|YP_248935.1| recombination factor protein RarA [Haemophilus influenzae 86-028NP] gi|68058022|gb|AAX88275.1| predicted ATPase related to the helicase subunit of the holliday junction resolvase [Haemophilus influenzae 86-028NP] Length = 446 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTNLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A D A + + +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|328794088|ref|XP_001122859.2| PREDICTED: uncharacterized AAA domain-containing protein YrvN-like, partial [Apis mellifera] Length = 328 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L E GQ K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 8 MRPQNLNEVVGQQHLIGPGKIIRRMVEAKM--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + +K + A L +L +DEIHRL ++ L P +E Q+ L+ Sbjct: 66 FRQLNAATDSKKQLEQVAAEGKLSGTVILLLDEIHRLDKTKQDFLLPLLESGQIILI 122 >gi|326382142|ref|ZP_08203834.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL B-59395] gi|326198872|gb|EGD56054.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL B-59395] Length = 453 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 125/265 (47%), Gaps = 53/265 (20%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ S L+ I + A + VL GPPG GKTT+A ++++ Sbjct: 31 MRPSSLDEIVGQQHLLGDRSPLRRLIAGSGAAS-----VLLYGPPGTGKTTMASLISQAT 85 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + A ++ A++ R VLFIDE+HR S ++ L A+E+ Sbjct: 86 GGRFEALSA-LSAGVKEVRAVIDVARRRLAQGQQTVLFIDEVHRFSKTQQDALLDAVEN- 143 Query: 133 QLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 ++ L+V E PS F+++A PL R + ++L ED++ Sbjct: 144 RIVLLVAATTENPS----------FSVVA----------PLLSR-SLVLQLRSLTEEDVE 182 Query: 190 TIVQRGA----KLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +++R L G ++++DEAA + + G R R L + A+ A + E Sbjct: 183 AVLRRAVIDPRGLNGAVSLSDEAARHLVAVAGGDAR---RALTALEASADATEAGGVI-E 238 Query: 245 IAD--AALLRLAI--DKMGFDQLDL 265 +AD AA+ R A+ D+ G D+ Sbjct: 239 VADVEAAIDRAAVRYDRDGDQHYDV 263 >gi|269119747|ref|YP_003307924.1| ATPase AAA [Sebaldella termitidis ATCC 33386] gi|268613625|gb|ACZ07993.1| AAA ATPase central domain protein [Sebaldella termitidis ATCC 33386] Length = 408 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 14/165 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP+TLEEF GQ + V + K+R + +F GP G GKTTLA++VA +L Sbjct: 19 RPKTLEEFAGQKNIVGDKGVLKKILIKSR---FMNSIFWGPSGTGKTTLAEIVAEQLNYY 75 Query: 82 F---RSTSGPV--IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 + +T V I + + A ++E + +LF DEIHR + + ++ L + D ++ Sbjct: 76 YEYLNATKASVNDIKEIAEKAKKRFSIEGKQTILFFDEIHRFNKLQQDSL---LHDIEIG 132 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 ++ G + + NL+ L++ +D FGI R+ Sbjct: 133 NIILIGATTENPYFNLNN-ALLSRCLMFEFKKLDKEDIFGILKRI 176 >gi|148826111|ref|YP_001290864.1| recombination factor protein RarA [Haemophilus influenzae PittEE] gi|148716271|gb|ABQ98481.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus influenzae PittEE] Length = 453 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTNLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A D A + + +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|56421102|ref|YP_148420.1| recombination factor protein RarA [Geobacillus kaustophilus HTA426] gi|56380944|dbj|BAD76852.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 431 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 13/115 (11%) Query: 22 LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79 +RPRT++E GQ + ++ K +L L G PG GKT+LA +AR G Sbjct: 12 MRPRTIDEIVGQQHIIGPSTPLYKMVKKGHVPSL---LLYGEPGTGKTSLAYAIARTAGR 68 Query: 80 ----VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 +N + I +A + A N+ VLFIDEIHRL+ +++L P +E Sbjct: 69 EWVAINATAAGKKEIEEAVEAARWSGNV----VLFIDEIHRLNKAQQDVLLPHLE 119 >gi|13357754|ref|NP_078028.1| recombination factor protein RarA [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167972078|ref|ZP_02554355.1| ATPase, AAA family [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168282304|ref|ZP_02689971.1| ATPase, AAA family [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|170762441|ref|YP_001752277.1| recombination factor protein RarA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11280340|pir||B82922 conserved hypothetical ATP/GTP-binding protein UU196 [imported] - Ureaplasma urealyticum gi|6899161|gb|AAF30603.1|AE002119_8 conserved hypothetical ATP/GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168828018|gb|ACA33280.1| ATPase, AAA family [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675769|gb|EDT87674.1| ATPase, AAA family [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700699|gb|EDU18981.1| ATPase, AAA family [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 408 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 3/84 (3%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDE 113 +++F GPPG+GK++LA+V+A++L V F + PV+ L ++ D + ++ IDE Sbjct: 42 NLIFYGPPGVGKSSLAKVLAQDLKVPF-AFFNPVVDSKKQLMQIIEQALDLNNFIIIIDE 100 Query: 114 IHRLSIIVEEILYPAMEDFQLDLM 137 IHRL+ ++IL P +E ++ L Sbjct: 101 IHRLNKDKQDILLPIIEANKIKLF 124 >gi|308276523|gb|ADO26422.1| Replication-associated recombination protein A [Corynebacterium pseudotuberculosis I19] Length = 456 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L++ GQ L+ IE A EA V+ GPPG GKTT+A +++ Sbjct: 42 MRPRSLDQVVGQQHLLGPGRPLRRLIEGA---GEA--SVILYGPPGTGKTTIASLISTAT 96 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G +F S + + ++ A++ R VLFIDE+HR S ++ L A+E+ Sbjct: 97 GHHFVGLSA-LNSGVKEVRAVIDEARRSLIHGKRTVLFIDEVHRFSKTQQDALLAAVENR 155 Query: 133 QLDLMVG--EGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 156 TVLLVAATTENPSFSVVSPLLSR 178 >gi|259502971|ref|ZP_05745873.1| AAA family ATPase [Lactobacillus antri DSM 16041] gi|259169096|gb|EEW53591.1| AAA family ATPase [Lactobacillus antri DSM 16041] Length = 433 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP +L++ GQ + + + +L GPPG GKTTLA V+++ L + Sbjct: 10 LMRPASLDQMVGQEHLLAPGRPLYQIITEHLAV--SLLLWGPPGSGKTTLAYVMSQTLQL 67 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 F + + K G L L+ D VL +DEIHRL+ +++ L P +E+ + L+VG Sbjct: 68 PFEKFNASIQNK-GQLQKLVDAHPDESFVLLLDEIHRLTKPLQDYLLPYLENGHI-LLVG 125 >gi|212638579|ref|YP_002315099.1| recombination factor protein RarA [Anoxybacillus flavithermus WK1] gi|212560059|gb|ACJ33114.1| ATPase [Anoxybacillus flavithermus WK1] Length = 426 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 102/254 (40%), Gaps = 41/254 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT++E GQ + + K + +L GPPG+GKT+LA +A + Sbjct: 12 MRPRTIDEVIGQDDVIGSHTALYRMIKN--GYVPSLLLYGPPGVGKTSLAYAIAGTVQRP 69 Query: 82 FRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 F + K ++ ++ + E +LFIDEIHR + ++ L P +E + L+ Sbjct: 70 FYMLNATTAGKK-EMEEIVADARFEGNVILFIDEIHRFTKAQQDYLLPHVESGLITLIGA 128 Query: 140 E--------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 P+ RS + + + + LL L DR Sbjct: 129 TTENPFHSINPAVRSRLGQIKQLQPLTKEKTLALLHRALADR------------------ 170 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV------RDFAEVAHAKTITREI 245 +RG + ++DEA IA + G R A +L V RD V +T+ + Sbjct: 171 -ERGLGDWHIDISDEALSIIAEGANGDGRAALTILEEVVYATKQRDQYAVVDVQTVLFCV 229 Query: 246 ADAALLRLAIDKMG 259 + A L DK G Sbjct: 230 ENKA---LTYDKQG 240 >gi|169836411|ref|ZP_02869599.1| Holliday junction DNA helicase B [candidate division TM7 single-cell isolate TM7a] Length = 75 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 ++ ++ ++SL RP+ E+ GQ NL++ I+A K R E LDHVL GPPGLGK Sbjct: 15 DIDEQRIEVSL-RPQNFSEYIGQDRLKKNLQLAIKATKKRNEPLDHVLLYGPPGLGK 70 >gi|150020062|ref|YP_001305416.1| recombination factor protein RarA [Thermosipho melanesiensis BI429] gi|149792583|gb|ABR30031.1| AAA ATPase, central domain protein [Thermosipho melanesiensis BI429] Length = 410 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 36/240 (15%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE--- 77 +LRP+ EEF GQ E K I A + L +F GPPG GKT+ +++ ++ Sbjct: 7 ILRPKGFEEFIGQ-EHLFGEKGLIRLA-IESGNLFSAVFYGPPGCGKTSTLEIIRKKTDF 64 Query: 78 --LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133 N TS + K D A + L+ + ++F+DEIHR + ++I P +E D+ Sbjct: 65 EIYHFNAAVTSTIDVKKVLDYAQKVKGLK-KMLIFVDEIHRFNKKQQDIFLPGIERGDYI 123 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 E P LSR +IA +L +EI K +++ Sbjct: 124 FIGATTENPFKMINPALLSRIKVIAFK------------------KLKVFEI---KKLLE 162 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 R + + V + I S G R A + + D AK + +EI D ++ L Sbjct: 163 RAISVKNIDVMESVMDFITRISDGDARFAINIYDVLSDM-----AKALGKEIVDDEIVTL 217 >gi|317495439|ref|ZP_07953808.1| ATPase [Gemella moribillum M424] gi|316914498|gb|EFV35975.1| ATPase [Gemella moribillum M424] Length = 415 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 48/258 (18%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I+ LRP+ + + GQ KV + +++ + +L+ GPPG GKT++A +A EL Sbjct: 5 INELRPKKITDIIGQQHLIGKNKVLTKIVESK-KMFSFILY-GPPGTGKTSIANALANEL 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F+ + +K DL ++ + + +L +DE HRL+ +++IL P +E Sbjct: 63 DYKFKILNAVNCSKK-DLTTVIEESKRFKKVLLLLDEFHRLTKPMQDILLPEIE------ 115 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLT-NPLQDRFGIPIRLNFYEI-----EDLKT 190 +I TT T NP I RL +E+ +D+ Sbjct: 116 --------------YDNIYVIGCTTNNPYHTVNP-----AIRSRLMIFELKQINEDDIYN 156 Query: 191 IVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +++ AK L++ D+ IA+ S G R + + F + + I Sbjct: 157 YLKKIAKNNDIFSKNLSIDDDVFKAIALNSSGDLRYS------LNTFEILYNLSNKNEHI 210 Query: 246 ADAALLRLAIDKM-GFDQ 262 LL L+++K +D+ Sbjct: 211 TKEKLLSLSLEKFKNYDK 228 >gi|217961889|ref|YP_002340459.1| recombination factor protein RarA [Bacillus cereus AH187] gi|229141136|ref|ZP_04269678.1| hypothetical protein bcere0013_42300 [Bacillus cereus BDRD-ST26] gi|217063641|gb|ACJ77891.1| ATPase, AAA family [Bacillus cereus AH187] gi|228642414|gb|EEK98703.1| hypothetical protein bcere0013_42300 [Bacillus cereus BDRD-ST26] Length = 428 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 86/330 (26%), Positives = 128/330 (38%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L R DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKRFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|172040631|ref|YP_001800345.1| recombination factor protein RarA [Corynebacterium urealyticum DSM 7109] gi|171851935|emb|CAQ04911.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length = 461 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 17/147 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L E GQ R ++ V+ GPPG GKTT+A +++ G + Sbjct: 36 MRPRSLAEVVGQDHVLGPGTPLQRLIDGRGDS--SVILFGPPGTGKTTIASLISAASGRH 93 Query: 82 FRSTSGPVIAKAGDLAALLTNLED---------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S A + + +ED R VLFIDE+HR S ++ L A+E+ Sbjct: 94 FVALS----ALNSGVKEVRAVIEDARRRLLHGARTVLFIDEVHRFSKTQQDALLAAVENR 149 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E PS V LSR L+ Sbjct: 150 TVLLVAATTENPSFSVVSPLLSRSLLV 176 >gi|113866790|ref|YP_725279.1| recombination factor protein RarA [Ralstonia eutropha H16] gi|113525566|emb|CAJ91911.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Ralstonia eutropha H16] Length = 455 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ A L+V E+ + + ++ GPPG+GKTTLA+++A Sbjct: 21 LRPRTIDEVIGQQHLLGAGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMASAF 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V++ D+ + E R ++F+DE+HR + ++ P +E Sbjct: 76 DAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 132 >gi|296170787|ref|ZP_06852359.1| AAA family ATPase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894602|gb|EFG74339.1| AAA family ATPase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 451 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 19/148 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + S L+ +E + + V+ GPPG GKTTLA ++++ Sbjct: 35 MRPASLDEVVGQEHLLAPGSPLRRLVEGS-----GMASVILYGPPGSGKTTLAALISQAT 89 Query: 79 GVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S + A D+ A+ L N E + VLFIDE+HR S ++ L A+E+ Sbjct: 90 ARRFEALSA-LSAGVKDVRAVIDVARRALLNGE-QTVLFIDEVHRFSKTQQDALLSAVEN 147 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E PS V LSR ++ Sbjct: 148 RVVLLVAATTENPSFSVVAPLLSRSLIL 175 >gi|213966130|ref|ZP_03394317.1| recombination factor protein RarA [Corynebacterium amycolatum SK46] gi|213951228|gb|EEB62623.1| recombination factor protein RarA [Corynebacterium amycolatum SK46] Length = 488 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 16/120 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L+E GQ + + L+ +E + V+ GPPG GKTTLA +++ Sbjct: 68 MRPRNLDEVVGQDHLLAPGAPLRRLVEGGGDTS-----VILFGPPGTGKTTLASLISAAT 122 Query: 79 GVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 G +F + S + A ++ A+ L N + VLFIDE+HR S ++ L A+E+ Sbjct: 123 GRHFEALSA-LNAGVKEVRAVIDTARRTLVNQGIQTVLFIDEVHRFSKTQQDALLSAVEN 181 >gi|323495033|ref|ZP_08100122.1| recombination factor protein RarA [Vibrio brasiliensis LMG 20546] gi|323310690|gb|EGA63865.1| recombination factor protein RarA [Vibrio brasiliensis LMG 20546] Length = 428 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 17/151 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TLE++ GQ A L+ +EA + ++ GPPG GKTTLA+V A Sbjct: 1 MRPETLEQYIGQQHILGAGKPLRRSLEAGH-----IHSMILWGPPGTGKTTLAEVAANYA 55 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 S V + ++ A + + R +LF+DE+HR + ++ P +ED Sbjct: 56 NAEVERVSA-VTSGVKEIRAAIEKAREYKLAGRRTILFVDEVHRFNKSQQDAFLPHIEDG 114 Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATT 161 + + E PS LSR + T+ Sbjct: 115 TVTFIGATTENPSFELNNALLSRARVYKLTS 145 >gi|154248687|ref|YP_001419645.1| recombination factor protein RarA [Xanthobacter autotrophicus Py2] gi|154162772|gb|ABS69988.1| AAA ATPase central domain protein [Xanthobacter autotrophicus Py2] Length = 436 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L E GQ V + R+ L ++ GPPG GKTT+A+++A ++ Sbjct: 22 LRPAKLSEVVGQDHLVGPDGVLTRMLETRS--LGSLILWGPPGTGKTTVARLLASATDLH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + DL + R +LF+DEIHR + ++ P MED + Sbjct: 80 FEQISA-IFSGVADLKKVFEQARARRLVGKATLLFVDEIHRFNRAQQDSFLPVMEDGTVT 138 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 139 LVGATTENPS 148 >gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710] gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710] Length = 329 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 6/77 (7%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 SR V E RP+TL+E Q E S LK F++ + H+LF GPPG GKT Sbjct: 4 SREVIAELLWAEKYRPKTLDEIVNQEEIVSRLKRFVQERN-----MPHLLFAGPPGTGKT 58 Query: 69 TLAQVVAREL-GVNFRS 84 T A +A +L G N+R Sbjct: 59 TAAHCLAHDLFGENYRQ 75 >gi|255655288|ref|ZP_05400697.1| recombination factor protein RarA [Clostridium difficile QCD-23m63] gi|296451272|ref|ZP_06893012.1| AAA family ATPase [Clostridium difficile NAP08] gi|296880376|ref|ZP_06904339.1| AAA family ATPase [Clostridium difficile NAP07] gi|296259878|gb|EFH06733.1| AAA family ATPase [Clostridium difficile NAP08] gi|296428617|gb|EFH14501.1| AAA family ATPase [Clostridium difficile NAP07] Length = 421 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ + GQ N K+ + ++ L +++F GPPG+GKTT+A+++A N Sbjct: 7 IRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKN 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + D+ +++ L + +L+IDEI + ++ + ME+ + L Sbjct: 65 FYKINA-TNSSLEDIKNVISELGSINNISGVLLYIDEIQSFNKKQQQSILEFMENGSITL 123 Query: 137 MVG--EGPSARSVKINLSRFTL 156 + E P K LSR T+ Sbjct: 124 IASTTENPYHYVYKALLSRSTV 145 >gi|237809054|ref|YP_002893494.1| recombination factor protein RarA [Tolumonas auensis DSM 9187] gi|237501315|gb|ACQ93908.1| AAA ATPase central domain protein [Tolumonas auensis DSM 9187] Length = 448 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L+++ GQ + L+ IEA + ++ GPPG GKTTLA+++AR Sbjct: 19 MRPERLDQYIGQSHLLAEGKPLRRAIEAGHCHS-----MILWGPPGTGKTTLAELMARYC 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 + S V + ++ A + +D R +LF+DE+HR + ++ P +ED Sbjct: 74 QADVERISA-VTSGVKEIRAAIDRAKDNSYRARRTLLFVDEVHRFNKSQQDAFLPHIEDG 132 Query: 133 QLDLMVGEGPSARSVKIN 150 + + VG S ++N Sbjct: 133 TI-IFVGATTENPSFELN 149 >gi|294659828|ref|XP_462254.2| DEHA2G16302p [Debaryomyces hansenii CBS767] gi|199434262|emb|CAG90750.2| DEHA2G16302p [Debaryomyces hansenii] Length = 786 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L+E+ GQ + LK I +++ + + G PG+GKT+LA+++++ Sbjct: 198 LRPKSLDEYYGQEKLVGENGILKNII-----KSDQIPSFILWGVPGVGKTSLARIISQTS 252 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F SG A L + T ++ + +LF+DEIHR + V+++L P +E Sbjct: 253 NCKFLEVSG-AEGNAKRLREVFTMADNERRLTGRKTILFLDEIHRFNKAVQDLLLPVIE 310 >gi|160914951|ref|ZP_02077165.1| hypothetical protein EUBDOL_00959 [Eubacterium dolichum DSM 3991] gi|158433491|gb|EDP11780.1| hypothetical protein EUBDOL_00959 [Eubacterium dolichum DSM 3991] Length = 429 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+E GQ KV + + L ++F GPPG GKTTLA V+A L Sbjct: 12 MRPSVLDEIIGQQHLIGEGKVLRKCVEN--NMLFSMIFYGPPGTGKTTLAMVLANTLNKP 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 +R + V DL + + V+ +DE+HRL+ +++L P +ED + +M+G Sbjct: 70 YRLFNA-VSGNKKDLDRIFEEAKYFPGLVVIVDEVHRLNKDKQDLLLPHIEDGSI-IMIG 127 >gi|75764869|ref|ZP_00744233.1| ATPase, AAA family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487644|gb|EAO51496.1| ATPase, AAA family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 330 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + +TDEA S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYAVTITDEALHHFTNASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|322832175|ref|YP_004212202.1| AAA ATPase [Rahnella sp. Y9602] gi|321167376|gb|ADW73075.1| AAA ATPase central domain protein [Rahnella sp. Y9602] Length = 447 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL E+ GQ + K A +A L ++ GPPG GKTTLA+++ R + Sbjct: 20 MRPVTLAEYIGQQHLLAPGKPLPRAIEA--GQLHSMILWGPPGTGKTTLAELIGRYANAD 77 Query: 82 FRSTSGPVIAKAGDL-AALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ A+ ++RD +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISA-VTSGVKDIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTIT 136 Query: 136 LM--VGEGPS 143 + E PS Sbjct: 137 FIGATTENPS 146 >gi|110834153|ref|YP_693012.1| recombination factor protein RarA [Alcanivorax borkumensis SK2] gi|110647264|emb|CAL16740.1| ATPase AAA family related to the helicase subunit of the Holliday junction resolvase [Alcanivorax borkumensis SK2] Length = 443 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 14/163 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L+++ GQ K +A R + L ++ GPPG GKTTLA ++A+ + Sbjct: 20 LRPTRLDDYVGQQHLVGEGKPLRQALD-RGQ-LHSMILWGPPGTGKTTLALIMAQTVDAA 77 Query: 82 FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + S + I A + A +L R VLF+DE+HR + ++ P +E+ + Sbjct: 78 FITLSAVLSGVKDIRAAVEQAQILLGQGRRTVLFVDEVHRFNKAQQDAFLPHVEEGTITF 137 Query: 137 M--VGEGPS-----ARSVKINLSRFTLIAATTRVGLLTNPLQD 172 + E PS A + + R +A GLL L D Sbjct: 138 IGATTENPSFELNNALLSRARVYRLRALAPEDLSGLLVRALHD 180 >gi|47220389|emb|CAF98488.1| unnamed protein product [Tetraodon nigroviridis] Length = 499 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 20/127 (15%) Query: 17 ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 ADI LRP TLEE+ GQ + L+ +E+ E + + GPPG GKTTLA + Sbjct: 162 ADI--LRPDTLEEYFGQNKVIGQQTLLRSLLES-----EEIPSFILWGPPGCGKTTLAHI 214 Query: 74 VA---RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123 +A + G T A D+ ++ ++ + VLFIDEIHR + ++ Sbjct: 215 IAGKCKRKGTARFVTLSATSASVSDVREVIKQAQNELRLCKRKTVLFIDEIHRFNKSQQD 274 Query: 124 ILYPAME 130 P +E Sbjct: 275 TFLPHVE 281 >gi|229086962|ref|ZP_04219119.1| hypothetical protein bcere0022_35350 [Bacillus cereus Rock3-44] gi|228696338|gb|EEL49166.1| hypothetical protein bcere0022_35350 [Bacillus cereus Rock3-44] Length = 435 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 39/317 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 16 MRPTNIKEIIGQEHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 73 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L L +G Sbjct: 74 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTL-IG 131 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 S IN + I + ++ L +DR I ++ + E +G Sbjct: 132 ATTSNPFHAIN----SAIRSRCQIFELHALTEDRILIGLKRALIDKE-------KGLGEY 180 Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITREIADAALLRLAI-- 255 + VTDEA A S G R A L + F IT +IA+ L + + Sbjct: 181 NVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQEVEITLDIAEECLQKKSFVH 240 Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 DK G D+ L+ ++ G V A+ L +I+ G +Q Sbjct: 241 DKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR--LIEAGDLQSI-- 282 Query: 316 GRLLMPIAWQHLGIDIP 332 GR L+ +A++ +G+ P Sbjct: 283 GRRLLIMAYEDIGLASP 299 >gi|217076507|ref|YP_002334223.1| recombination factor protein RarA [Thermosipho africanus TCF52B] gi|217036360|gb|ACJ74882.1| ATPase, AAA family [Thermosipho africanus TCF52B] Length = 410 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 37/235 (15%) Query: 21 LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +LRP+ E+ GQ LK+ IE ++L +F GPPG GKT+ +V+ Sbjct: 7 ILRPKNFEDVVGQEHILGEKGILKLAIEK-----DSLFSAIFYGPPGCGKTSTLEVIKLN 61 Query: 78 LGV-----NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 N TS + K + AA + +++ + ++FIDE HR + ++I P +E F Sbjct: 62 TSYEVYHFNAAITSTAEVKKILEYAAKVKDVK-KILIFIDEFHRFNKKQQDIFLPGVEAF 120 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL-LTNP-LQDRFGIPIRLNFYEIEDLKT 190 + LI ATT + NP L R + + + E + Sbjct: 121 D--------------------YVLIGATTENPYKMVNPALLSRVRL-VAFKKLQKEHIIK 159 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++++ + + + + A IA S G R A L + D A K I EI Sbjct: 160 LLEKAVNVKKVDINENAKDFIARVSNGDGRFAINLYEILSDIAISIDKKIIDEEI 214 >gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1] gi|158513390|sp|A3DNV9|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1] Length = 329 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 6/77 (7%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 SR V E RP+TL+E Q E S LK F+ + + H+LF GPPG GKT Sbjct: 4 SREVIAELLWAEKYRPKTLDEIVDQEEIVSRLKQFV-----KERNMPHLLFAGPPGTGKT 58 Query: 69 TLAQVVAREL-GVNFRS 84 T A +A +L G N+R Sbjct: 59 TAAHCLAHDLFGENYRQ 75 >gi|300858568|ref|YP_003783551.1| hypothetical protein cpfrc_01151 [Corynebacterium pseudotuberculosis FRC41] gi|300686022|gb|ADK28944.1| hypothetical protein cpfrc_01151 [Corynebacterium pseudotuberculosis FRC41] gi|302206281|gb|ADL10623.1| Replication-associated recombination protein A [Corynebacterium pseudotuberculosis C231] gi|302330838|gb|ADL21032.1| Uncharacterized AAA domain-containing protein [Corynebacterium pseudotuberculosis 1002] Length = 445 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L++ GQ L+ IE A EA V+ GPPG GKTT+A +++ Sbjct: 31 MRPRSLDQVVGQQHLLGPGRPLRRLIEGA---GEA--SVILYGPPGTGKTTIASLISTAT 85 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G +F S + + ++ A++ R VLFIDE+HR S ++ L A+E+ Sbjct: 86 GHHFVGLSA-LNSGVKEVRAVIDEARRSLIHGKRTVLFIDEVHRFSKTQQDALLAAVENR 144 Query: 133 QLDLMVG--EGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 145 TVLLVAATTENPSFSVVSPLLSR 167 >gi|238855295|ref|ZP_04645614.1| recombination factor protein RarA [Lactobacillus jensenii 269-3] gi|260664653|ref|ZP_05865505.1| recombination factor protein RarA [Lactobacillus jensenii SJ-7A-US] gi|282932412|ref|ZP_06337837.1| replication-associated recombination protein A [Lactobacillus jensenii 208-1] gi|313471894|ref|ZP_07812386.1| ATPase, AAA family [Lactobacillus jensenii 1153] gi|238832187|gb|EEQ24505.1| recombination factor protein RarA [Lactobacillus jensenii 269-3] gi|239529188|gb|EEQ68189.1| ATPase, AAA family [Lactobacillus jensenii 1153] gi|260561718|gb|EEX27690.1| recombination factor protein RarA [Lactobacillus jensenii SJ-7A-US] gi|281303361|gb|EFA95538.1| replication-associated recombination protein A [Lactobacillus jensenii 208-1] Length = 433 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L E GQ K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 8 MRPKDLSEVVGQQHLVGPGKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + K DL AL + +L +DEIHRL ++ L P +E Q+ L+ Sbjct: 66 FRILNAATDTKK-DLQQVALEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIVLI 122 >gi|89070526|ref|ZP_01157815.1| ATPase, AAA family protein [Oceanicola granulosus HTCC2516] gi|89043833|gb|EAR50031.1| ATPase, AAA family protein [Oceanicola granulosus HTCC2516] Length = 441 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 21/175 (12%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ L + GQ + + L + + +L ++F GPPG+GKTT+A+++A E Sbjct: 28 LRPQRLADVVGQEQVLGPEAPLTTMLASG-----SLSSLVFWGPPGVGKTTIARLLAAET 82 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S + K + A L +LF+DEIHR + ++ P MED Sbjct: 83 DLHFVQISAIFTGVQELRKVFEAARLRRQAGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 142 Query: 134 LDLMVGEGPSARSVKIN---LSRFTLIA----ATTRVGLLTNPLQDRFGIPIRLN 181 + L+VG S ++N LSR ++ R+ LL + G P+ L+ Sbjct: 143 I-LLVGATTENPSFELNAALLSRAQVLVLERLPLARLELLAQRAEAELGRPLPLD 196 >gi|260580369|ref|ZP_05848198.1| replication-associated recombination protein A [Haemophilus influenzae RdAW] gi|260093046|gb|EEW76980.1| replication-associated recombination protein A [Haemophilus influenzae RdAW] Length = 446 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE++ GQ K +A +A + ++ GPPG GKTTLA+++A+ + Sbjct: 20 MRPTSLEQYFGQSHLIGEGKPLRKAIQA--GHIYSMILWGPPGTGKTTLAEIIAQRINAE 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 TSG I +A D A + + +LF+DE+HR + ++ P +ED Sbjct: 78 VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|331701253|ref|YP_004398212.1| AAA ATPase central domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329128596|gb|AEB73149.1| AAA ATPase central domain protein [Lactobacillus buchneri NRRL B-30929] Length = 425 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LEE GQ + K+ RA+ L ++ GPPG GKT++A +A Sbjct: 9 MRPTKLEEIVGQQDLVGPGKIIDRMV--RAKMLSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + VL +DEIHRL ++ L P +E + +++G Sbjct: 67 FRVLNAATDTKKDLQVVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPLLESGSI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYININ 135 >gi|262380591|ref|ZP_06073745.1| recombination factor protein RarA [Acinetobacter radioresistens SH164] gi|262298037|gb|EEY85952.1| recombination factor protein RarA [Acinetobacter radioresistens SH164] Length = 423 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGEQAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S +IA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFISLSALNTGVKELREIIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR ++ + + LL LQ D F ++ Sbjct: 119 EKGKITLIGATTENPSFEVNGALLSRCQVYTLNILDSESIQTLLDKALQTDEF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 +IE+ ++Q A Sbjct: 176 HIQIEEYDALIQFAA 190 >gi|256850909|ref|ZP_05556298.1| recombination factor protein RarA [Lactobacillus jensenii 27-2-CHN] gi|260661123|ref|ZP_05862037.1| recombination factor protein RarA [Lactobacillus jensenii 115-3-CHN] gi|282934179|ref|ZP_06339457.1| replication-associated recombination protein A [Lactobacillus jensenii 208-1] gi|297205787|ref|ZP_06923182.1| AAA family ATPase [Lactobacillus jensenii JV-V16] gi|256615971|gb|EEU21159.1| recombination factor protein RarA [Lactobacillus jensenii 27-2-CHN] gi|260548060|gb|EEX24036.1| recombination factor protein RarA [Lactobacillus jensenii 115-3-CHN] gi|281301793|gb|EFA94059.1| replication-associated recombination protein A [Lactobacillus jensenii 208-1] gi|297148913|gb|EFH29211.1| AAA family ATPase [Lactobacillus jensenii JV-V16] Length = 432 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L E GQ K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 8 MRPQDLTEVVGQSHLVGPGKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + K DL AL + +L +DEIHRL ++ L P +E Q+ L+ Sbjct: 66 FRMLNAATDTKK-DLQQVALEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIVLI 122 >gi|310816981|ref|YP_003964945.1| ATPase, AAA family protein [Ketogulonicigenium vulgare Y25] gi|308755716|gb|ADO43645.1| ATPase, AAA family protein [Ketogulonicigenium vulgare Y25] Length = 441 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 25/154 (16%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L + GQ + A + L + + + +L ++ GPPG+GKTT+A+++A + Sbjct: 24 LRPRALGDVIGQEQVLGADAPLGIMLAS-----HSLSSLILWGPPGVGKTTIARLLADQT 78 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + F S P + K + A L +LF+DEIHR + ++ P MED Sbjct: 79 SLAFVQISAIFTGVPDLKKVFEGARLRRANGQGTLLFVDEIHRFNKAQQDSFLPHMEDGT 138 Query: 134 LDLMVG---EGPS--------ARSVKINLSRFTL 156 + ++VG E PS +R+ + L+R TL Sbjct: 139 I-VLVGATTENPSFELNAALLSRAQVLVLNRLTL 171 >gi|255318063|ref|ZP_05359308.1| ATPase, AAA family [Acinetobacter radioresistens SK82] gi|255304886|gb|EET84058.1| ATPase, AAA family [Acinetobacter radioresistens SK82] Length = 423 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 36/195 (18%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + L+ I+ L ++F GPPG+GKTT+A ++A+ + Sbjct: 12 LRPRDLSEIIGQDHLLGEQAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 66 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 F S S +IA++GD LLT V+FIDEIHR + ++ L A+ Sbjct: 67 DRPFISLSALNTGVKELREIIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 118 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQ-DRFGIPIRLN 181 E ++ L+ E PS LSR ++ + + LL LQ D F ++ Sbjct: 119 EKGKITLIGATTENPSFEVNGALLSRCQVYTLNILDSESIQTLLDKALQTDEF---LKER 175 Query: 182 FYEIEDLKTIVQRGA 196 +IE+ ++Q A Sbjct: 176 HIQIEEYDALIQFAA 190 >gi|188534279|ref|YP_001908076.1| recombination factor protein RarA [Erwinia tasmaniensis Et1/99] gi|188029321|emb|CAO97198.1| Putative polynucleotide ATPase protein [Erwinia tasmaniensis Et1/99] Length = 447 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL E+ GQ + A L IEA L ++ GPPG GKTTLA+++ Sbjct: 20 MRPRTLAEYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEIIGHYG 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A + R +LF+DE+HR + ++ P +ED Sbjct: 75 QADVERISAVTSGIKDIREAIERARQNRHAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|114771241|ref|ZP_01448661.1| ATPase, AAA family protein [alpha proteobacterium HTCC2255] gi|114548166|gb|EAU51053.1| ATPase, AAA family protein [alpha proteobacterium HTCC2255] Length = 438 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 16/137 (11%) Query: 23 RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP + + GQ + + +L + +E+ L ++F GPPG+GKTT+A+++A E+ Sbjct: 25 RPTKITDVIGQQKLIGSDGSLTIMLESGN-----LPSIIFWGPPGVGKTTIARLLASEVN 79 Query: 80 VNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F S + + DL AA + +L + +LF+DEIHR + ++ P +E+ Sbjct: 80 MHFVQMSA-IYSGVSDLKKQFEAAKIRHLNGKSTLLFVDEIHRFNKSQQDGFLPFIENGT 138 Query: 134 LDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 139 I-VLVGATTENPSFELN 154 >gi|304397061|ref|ZP_07378940.1| AAA ATPase central domain protein [Pantoea sp. aB] gi|304355210|gb|EFM19578.1| AAA ATPase central domain protein [Pantoea sp. aB] Length = 447 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+++ GQ A L IEA L ++ GPPG GKTTLA+++A Sbjct: 20 MRPETLKQYIGQQHLLGAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEIIAHYG 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A + R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNKHAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|196012762|ref|XP_002116243.1| hypothetical protein TRIADDRAFT_30677 [Trichoplax adhaerens] gi|190581198|gb|EDV21276.1| hypothetical protein TRIADDRAFT_30677 [Trichoplax adhaerens] Length = 478 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 20/151 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76 +RP L ++ GQ + ++L+ IE+ + ++F GPPG GKTTLA ++A+ Sbjct: 48 IRPNVLTDYIGQDDVLGGKTSLRSLIESGDIHS-----MIFWGPPGCGKTTLANIIAKSG 102 Query: 77 ELGVNFR-------STSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPA 128 + N R S+ + + D+A + +R +LF+DEIHR + +++ P Sbjct: 103 KSKANMRFIQLSATSSGTQKVREVIDIAQKDRTMFNRQTILFMDEIHRFNKAQQDVFLPY 162 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E+ + L+ E PS LSR +I Sbjct: 163 VENGTIVLIGATTENPSFSLNNALLSRCHVI 193 >gi|323144222|ref|ZP_08078854.1| replication-associated recombination protein A [Succinatimonas hippei YIT 12066] gi|322415997|gb|EFY06699.1| replication-associated recombination protein A [Succinatimonas hippei YIT 12066] Length = 475 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 15/121 (12%) Query: 20 SLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S +RP +L+++ GQ + L++ +E ++ + ++F GPPG+GKTTLA ++A+ Sbjct: 35 SRMRPESLDDYIGQSHLIGPGRPLRMALERKQSYS-----MIFWGPPGVGKTTLALIIAK 89 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAME 130 G S V + D+ A + R VLF+DE+HR + ++ P +E Sbjct: 90 SSGAVLEQISA-VTSGVKDIRAAIDRAMSRKRQGVRTVLFVDEVHRFNKSQQDAFLPYIE 148 Query: 131 D 131 + Sbjct: 149 N 149 >gi|170691962|ref|ZP_02883126.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M] gi|170143246|gb|EDT11410.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M] Length = 480 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 117/261 (44%), Gaps = 48/261 (18%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR ++E GQ L+V E+ +A + ++ GPPG+GKTTLA+++A Sbjct: 58 LRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHS-----MILWGPPGVGKTTLARLMADAF 112 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S + I +A + A + + ++F+DE+HR + ++ P +E Sbjct: 113 HAQFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 171 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L + VG S ++N + + A L + ++L+ +++ Sbjct: 172 LFVFVGATTENPSFEVNSALLSRAAVYV------------------LKSLDEDELRELLE 213 Query: 194 RGAK-LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R + L GL TDEA + + G R +LL + A A A+ T EI D ALL Sbjct: 214 RAQRELGGLTFTDEARDALIGSADGDGR---KLLNNLEIVARAA-AQQKTTEI-DGALLG 268 Query: 253 LAI-------DKMG---FDQL 263 A+ DK G +DQ+ Sbjct: 269 SALAENLRRFDKGGDAFYDQI 289 >gi|304387476|ref|ZP_07369667.1| replication-associated recombination protein A [Neisseria meningitidis ATCC 13091] gi|304338569|gb|EFM04688.1| replication-associated recombination protein A [Neisseria meningitidis ATCC 13091] Length = 436 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L+V +E K + +L G PG+GKTTLA+++A+ Sbjct: 17 LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGSPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S I +A D A + +LF+DE+HR + ++ P +E+ Sbjct: 72 NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVENGL 131 Query: 134 LDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153 >gi|296333157|ref|ZP_06875610.1| recombination factor protein RarA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675337|ref|YP_003867009.1| putative helicase associated protein (ATPase, AAA family) [Bacillus subtilis subsp. spizizenii str. W23] gi|296149355|gb|EFG90251.1| recombination factor protein RarA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413581|gb|ADM38700.1| putative helicase associated protein (ATPase, AAA family) [Bacillus subtilis subsp. spizizenii str. W23] Length = 421 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+ GQ + K+ +A+ L ++ GPPG+GKT++A +A + Sbjct: 8 MRPTKIEDIIGQQHLVAEDKII--GRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 FR + + K ++ A + + +L +DE+HRL ++ L P +E+ Sbjct: 66 FRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116 >gi|23099472|ref|NP_692938.1| recombination factor protein RarA [Oceanobacillus iheyensis HTE831] gi|22777701|dbj|BAC13973.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 425 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ ++E GQ K+ KA L ++ GPPG GKT++A +A +G+ Sbjct: 11 MRPKNIDEIIGQEHLVGQGKIIDRMVKANM--LSSMILFGPPGTGKTSMAYALANSVGLP 68 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 + + V K D+ ++ + R VL +DE+HRL ++ L P +E L L+ Sbjct: 69 LKILNA-VTDKKKDMEIVVEEAKMRGQMVLILDEVHRLDKAKQDFLLPHLESNLLTLI 125 >gi|332158284|ref|YP_004423563.1| putative protein replication factor C small subunit [Pyrococcus sp. NA2] gi|331033747|gb|AEC51559.1| putative protein replication factor C small subunit [Pyrococcus sp. NA2] Length = 1267 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 17/102 (16%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+ L+E GQ LK +++ ++ H+LF GPPG+GKTT A +AREL G N Sbjct: 19 RPQRLDEIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALARELFGEN 73 Query: 82 FR----------STSGPVIAKAGDLAALLTNLEDRDVLFIDE 113 +R S + P++ + + + T + D L+ DE Sbjct: 74 WRHNFLELNASVSKNTPILVRINE-RIVRTTFAELDRLYFDE 114 >gi|228948113|ref|ZP_04110397.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811471|gb|EEM57808.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 476 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 88/350 (25%), Positives = 136/350 (38%), Gaps = 65/350 (18%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++R+ L V + +RP ++E GQ K+ +A ++ G Sbjct: 37 IERDYTLRETVKMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119 PPG GKT++A +A G FR + V D+ ++ + VL +DE+HRL Sbjct: 95 PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178 ++ L P +E L TLI ATT +NP I Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188 Query: 179 RLNFYEI----ED-----LKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLL 226 R +E+ ED LK ++ K G + VT EA A S G R A L Sbjct: 189 RCQIFELHALTEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNAL 248 Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282 + F A IT EIA+ L + + DK G D+ L+ ++ G V Sbjct: 249 ELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306 Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 A+ L +I+ G +Q GR L+ +A++ +G+ P Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340 >gi|321312280|ref|YP_004204567.1| recombination factor protein RarA [Bacillus subtilis BSn5] gi|320018554|gb|ADV93540.1| recombination factor protein RarA [Bacillus subtilis BSn5] Length = 421 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+ GQ + K+ +A+ L ++ GPPG+GKT++A +A + Sbjct: 8 MRPTKIEDIIGQQHLVAEDKII--GRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 FR + + K ++ A + + +L +DE+HRL ++ L P +E+ Sbjct: 66 FRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116 >gi|239616608|ref|YP_002939930.1| AAA ATPase central domain protein [Kosmotoga olearia TBF 19.5.1] gi|239505439|gb|ACR78926.1| AAA ATPase central domain protein [Kosmotoga olearia TBF 19.5.1] Length = 427 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 12/146 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79 LRPR ++ GQ E + I A +LF GPPG GKTT+A+++ L Sbjct: 7 LRPRNFDDLVGQ-EHLTGKNGIIRRAVESGYVFSMILF-GPPGSGKTTIARLIKESLADD 64 Query: 80 -VNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S + + K + A L VLF+DEIHRL+ +++ P +ED Sbjct: 65 KYEFVAFSASLQGTADLKKIFERARQLRKYGKHLVLFVDEIHRLNKTQQDVFLPVVEDGT 124 Query: 134 LDLM--VGEGPSARSVKINLSRFTLI 157 + L+ E PS LSR L+ Sbjct: 125 VTLIGATTENPSFEVNPALLSRCRLL 150 >gi|254246062|ref|ZP_04939383.1| ATPase [Burkholderia cenocepacia PC184] gi|124870838|gb|EAY62554.1| ATPase [Burkholderia cenocepacia PC184] Length = 441 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 38/257 (14%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 22 LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + +D +LF+DEIHR + ++ L P +E Sbjct: 77 DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 135 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + LN E+ L Sbjct: 136 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKS-----------LNDDEMRQLLKR 179 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 Q A L GLA D+A + + G R LL + + A A TI + A+ Sbjct: 180 AQEIA-LDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATIDADFVSNAMT 238 Query: 252 RLA--IDKMG---FDQL 263 A DK G +DQ+ Sbjct: 239 LNARRFDKGGDNFYDQI 255 >gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis 1221n] gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis 1221n] Length = 326 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPRTL+E Q E LK F+E + H+LF GPPG GKTT+A +A +L G + Sbjct: 14 RPRTLDEVVNQKEVVVRLKKFVEEKN-----IPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68 Query: 82 FRS 84 +R Sbjct: 69 YRK 71 >gi|160945075|ref|ZP_02092301.1| hypothetical protein FAEPRAM212_02594 [Faecalibacterium prausnitzii M21/2] gi|158442806|gb|EDP19811.1| hypothetical protein FAEPRAM212_02594 [Faecalibacterium prausnitzii M21/2] Length = 424 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 16/146 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ + +VF IE+ + + +++F GP G GKTT+A+++A Sbjct: 9 LRPKTLADVCGQQHLLAPGRVFRRTIESGR-----IPNMIFYGPSGTGKTTVARIIAENS 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133 G+ +G GD+ A+L ++ +L++DEI L+ ++ L +ED Sbjct: 64 GMTLHKLNGTSCG-TGDIKAVLKDIGTLAAAGGILLYLDEIQYLNKKQQQSLLECIEDGS 122 Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E P LSR T+ Sbjct: 123 VTLIASTTENPYFYIYNALLSRCTVF 148 >gi|16079807|ref|NP_390631.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. 168] gi|221310690|ref|ZP_03592537.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. 168] gi|221315014|ref|ZP_03596819.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319935|ref|ZP_03601229.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. JH642] gi|221324216|ref|ZP_03605510.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. SMY] gi|81555984|sp|O34528|YRVN_BACSU RecName: Full=Uncharacterized AAA domain-containing protein YrvN gi|2635199|emb|CAB14695.1| putative helicase associated protein (ATPase, AAA family) [Bacillus subtilis subsp. subtilis str. 168] Length = 421 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+ GQ + K+ +A+ L ++ GPPG+GKT++A +A + Sbjct: 8 MRPTKIEDIIGQQHLVAEDKII--GRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 FR + + K ++ A + + +L +DE+HRL ++ L P +E+ Sbjct: 66 FRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116 >gi|330860580|emb|CBX70879.1| hypothetical protein YEW_DI14130 [Yersinia enterocolitica W22703] Length = 208 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLE++ GQ + K A A L ++ GPPG GKTTLA+++ R + Sbjct: 17 MRPLTLEQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 75 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163 >gi|291485161|dbj|BAI86236.1| recombination factor protein RarA [Bacillus subtilis subsp. natto BEST195] Length = 421 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+ GQ + K+ +A+ L ++ GPPG+GKT++A +A + Sbjct: 8 MRPTKIEDIIGQQHLVAEDKII--GRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 FR + + K ++ A + + +L +DE+HRL ++ L P +E+ Sbjct: 66 FRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116 >gi|323701391|ref|ZP_08113065.1| AAA ATPase central domain protein [Desulfotomaculum nigrificans DSM 574] gi|323533650|gb|EGB23515.1| AAA ATPase central domain protein [Desulfotomaculum nigrificans DSM 574] Length = 434 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 LS+N Q +RPR L+E+ GQ K+ A +A + L ++ GPPG GK Sbjct: 6 LSQNSLQAAPLAERMRPRNLDEYIGQQHIVGPGKLLRRAIEA--DKLGSIILYGPPGTGK 63 Query: 68 TTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRL 117 TTLA ++++ +F + S V ++ NL + + FIDEIH L Sbjct: 64 TTLATIISQMTSADFVKINAVSSGVAEIRAEIKKARDNLNYYGKKTIFFIDEIHSL 119 >gi|295105669|emb|CBL03213.1| Recombination protein MgsA [Faecalibacterium prausnitzii SL3/3] Length = 424 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 16/146 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ + +VF IE+ + + +++F GP G GKTT+A+++A Sbjct: 9 LRPKTLADVCGQQHLLAPGRVFRRTIESGR-----IPNMIFYGPSGTGKTTVARIIAENS 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133 G+ +G GD+ A+L ++ +L++DEI L+ ++ L +ED Sbjct: 64 GMTLHKLNGTSCG-TGDIKAVLKDIGTLAAAGGILLYLDEIQYLNKKQQQSLLECIEDGS 122 Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E P LSR T+ Sbjct: 123 VTLIASTTENPYFYIYNALLSRCTVF 148 >gi|238063892|ref|ZP_04608601.1| recombination factor protein rarA [Micromonospora sp. ATCC 39149] gi|237885703|gb|EEP74531.1| recombination factor protein rarA [Micromonospora sp. ATCC 39149] Length = 498 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E GQ + + L+ + A + V+ GPPG GKTT+A +VA Sbjct: 41 MRPASLDELVGQGHLLAPGAPLRQLVVGATPMS-----VILWGPPGCGKTTIAHLVAHAT 95 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S + A D+ A++ + VLFIDE+HR S ++ L A+ED Sbjct: 96 DRRFVAMSA-LTAGVKDVRAVIDTARRQRRSGGPQTVLFIDEVHRFSKTQQDSLLAAVED 154 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E P + LSR L+ Sbjct: 155 RTVTLLAATTENPYFSVISPLLSRCVLL 182 >gi|107022056|ref|YP_620383.1| recombination factor protein RarA [Burkholderia cenocepacia AU 1054] gi|116689000|ref|YP_834623.1| recombination factor protein RarA [Burkholderia cenocepacia HI2424] gi|105892245|gb|ABF75410.1| Recombination protein MgsA [Burkholderia cenocepacia AU 1054] gi|116647089|gb|ABK07730.1| Recombination protein MgsA [Burkholderia cenocepacia HI2424] Length = 436 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 38/257 (14%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + +D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + LN E+ L Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKS-----------LNDDEMRQLLKR 174 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 Q A L GLA D+A + + G R LL + + A A TI + A+ Sbjct: 175 AQEIA-LDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATIDADFVSNAMT 233 Query: 252 RLA--IDKMG---FDQL 263 A DK G +DQ+ Sbjct: 234 LNARRFDKGGDNFYDQI 250 >gi|330815819|ref|YP_004359524.1| AAA ATPase, central region [Burkholderia gladioli BSR3] gi|327368212|gb|AEA59568.1| AAA ATPase, central region [Burkholderia gladioli BSR3] Length = 436 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E GQ L++ E+ + + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLDEVIGQTHLLGEGKPLRLAFESGRPHS-----MILWGPPGVGKTTLARLTANAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V+ D+ + +D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIREAMEQAKDTLHRNGRHTILFVDEIHRFNKGQQDALLPFVE 129 >gi|308186247|ref|YP_003930378.1| hypothetical protein Pvag_0727 [Pantoea vagans C9-1] gi|308056757|gb|ADO08929.1| Uncharacterized protein [Pantoea vagans C9-1] Length = 447 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+++ GQ A L IEA L ++ GPPG GKTTLA+++A Sbjct: 20 MRPETLKQYIGQQHLLGAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEIIAHYG 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A + R +LF+DE+HR + ++ P +ED Sbjct: 75 NADVERISAVTSGVKEIREAIERARQNKHAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|164662339|ref|XP_001732291.1| hypothetical protein MGL_0066 [Malassezia globosa CBS 7966] gi|159106194|gb|EDP45077.1| hypothetical protein MGL_0066 [Malassezia globosa CBS 7966] Length = 446 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 21/155 (13%) Query: 22 LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP+TL+E+ GQ + + +L+ + + ++ GPPG GKTTLA+++ RE Sbjct: 62 MRPQTLDEYVGQDDVVNGSLRALLHKGH-----IPSMVLWGPPGSGKTTLARLLTREAIT 116 Query: 81 NFRSTS------GPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYP 127 T A A D+ ++ +R VLFIDEI R + +++ P Sbjct: 117 TTNHTPFRFVELSATTATANDVKRIVEEAVNRQMLTTQRTVLFIDEIQRFNRAQQDLFLP 176 Query: 128 AMEDFQLDLMVG--EGPSARSVKINLSRFTLIAAT 160 +E + L+ E PS R LSR ++ T Sbjct: 177 MLERGLITLLAATTENPSFRLQGALLSRLRVVVLT 211 >gi|261380370|ref|ZP_05984943.1| replication-associated recombination protein A [Neisseria subflava NJ9703] gi|284796894|gb|EFC52241.1| replication-associated recombination protein A [Neisseria subflava NJ9703] Length = 435 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L++ GQ + L+V +E K + +L GPPG+GKTTLA+++A+ Sbjct: 17 LRPHSLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S V + D+ + E +LF+DE+HR + ++ P +E Sbjct: 72 NAQFLPVSA-VFSGVKDIREAIEKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVESG 130 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 L + E PS LSR Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153 >gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM 2162] gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM 2162] Length = 347 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPRTL+E Q E LK F+E +++ H+LF GPPG GKTT+A +A +L Sbjct: 35 RPRTLDEVVNQKEIVVRLKKFVEE-----KSIPHMLFAGPPGTGKTTMAHCLAHDL 85 >gi|170732290|ref|YP_001764237.1| recombination factor protein RarA [Burkholderia cenocepacia MC0-3] gi|169815532|gb|ACA90115.1| AAA ATPase central domain protein [Burkholderia cenocepacia MC0-3] Length = 436 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 38/257 (14%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + +D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + LN E+ L Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKS-----------LNDDEMRQLLKR 174 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 Q A L GLA D+A + + G R LL + + A A TI + A+ Sbjct: 175 AQEIA-LDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATIDADFVSNAMT 233 Query: 252 RLA--IDKMG---FDQL 263 A DK G +DQ+ Sbjct: 234 LNARRFDKGGDNFYDQI 250 >gi|289670475|ref|ZP_06491550.1| recombination factor protein RarA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 457 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 29 MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F++ S P + + AA R VLF+DE+HR + + P +E Sbjct: 84 DAEFKAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQYAFLPHIERGT 143 Query: 134 LDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 144 I-LFVGATTENPSFELN 159 >gi|206976016|ref|ZP_03236926.1| ATPase, AAA family [Bacillus cereus H3081.97] gi|206745768|gb|EDZ57165.1| ATPase, AAA family [Bacillus cereus H3081.97] Length = 428 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|229098871|ref|ZP_04229807.1| hypothetical protein bcere0020_40950 [Bacillus cereus Rock3-29] gi|229117896|ref|ZP_04247258.1| hypothetical protein bcere0017_41660 [Bacillus cereus Rock1-3] gi|228665553|gb|EEL21033.1| hypothetical protein bcere0017_41660 [Bacillus cereus Rock1-3] gi|228684544|gb|EEL38486.1| hypothetical protein bcere0020_40950 [Bacillus cereus Rock3-29] Length = 428 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILRRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHQHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VTD A A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTDGALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|313114009|ref|ZP_07799564.1| recombination factor protein RarA [Faecalibacterium cf. prausnitzii KLE1255] gi|310623711|gb|EFQ07111.1| recombination factor protein RarA [Faecalibacterium cf. prausnitzii KLE1255] Length = 445 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 16/146 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ + +VF IE+ + + +++F GP G GKTT+A+++A Sbjct: 30 LRPKTLADVCGQQHLLAPGRVFRRTIESGR-----IPNMIFYGPSGTGKTTVARIIAENS 84 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133 G+ +G GD+ A+L ++ +L++DEI L+ ++ L +ED Sbjct: 85 GMTLHKLNGTSCG-TGDIKAVLKDIGTLAGAGGILLYLDEIQYLNKKQQQSLLECIEDGS 143 Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E P LSR T+ Sbjct: 144 VTLIASTTENPYFYIYNALLSRCTVF 169 >gi|167627500|ref|YP_001678000.1| recombination factor protein RarA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597501|gb|ABZ87499.1| AAA family-ATPase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 411 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 103/240 (42%), Gaps = 36/240 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+++EE GQ S + + + ++ G PG+GKTTLA+++A + Sbjct: 10 LRPQSIEEVIGQEHILSKNGSLTKILAG--DGICSLILCGKPGVGKTTLAKIIASSKQLE 67 Query: 82 FRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 F S V + D+ L+ + + VLF+DEIHR + +++L P +E Sbjct: 68 FFELSA-VDSGVKDVKKLIADNQHLGSFVLFLDEIHRFNKSQQDLLLPYVES-------- 118 Query: 140 EGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG-- 195 + LI ATT L N L R I +RL I + + ++QR Sbjct: 119 ------------GKIILIGATTENPTYYLNNALVSRVFI-LRLKRLNISETRKLIQRAIT 165 Query: 196 -----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 AK + + D+ I S G R LL R+ ++ + + +++ D A+ Sbjct: 166 KDELLAKHS-FEIDDDLYNAIHNYSEGDCRKILNLLERMFLISDRTNTIHLDKDLFDQAV 224 >gi|242239684|ref|YP_002987865.1| recombination factor protein RarA [Dickeya dadantii Ech703] gi|242131741|gb|ACS86043.1| AAA ATPase central domain protein [Dickeya dadantii Ech703] Length = 447 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 31/225 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR--ELG 79 +RP TL ++ GQ K A +A L ++ GPPG GKTTLA+++ R E Sbjct: 20 MRPTTLAQYIGQQHLLGPGKPLPRAIEA--GQLHSMILWGPPGTGKTTLAELIGRYGEAD 77 Query: 80 VNFRS--TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 V S TSG I +A + A N R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGIKDIREAVERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 137 Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL--KTIV 192 + E PS LSR RV LL + L+ +IE + + +V Sbjct: 138 IGATTENPSFELNSALLSR-------ARVYLLKS-----------LDTADIEQVLAQAMV 179 Query: 193 QRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235 R L G + + DE +A G R A LL + D AEV Sbjct: 180 DRERGLGGQHIVLPDETRRLLAELVNGDARRALNLLEMMADMAEV 224 >gi|172059904|ref|YP_001807556.1| recombination factor protein RarA [Burkholderia ambifaria MC40-6] gi|171992421|gb|ACB63340.1| AAA ATPase central domain protein [Burkholderia ambifaria MC40-6] Length = 436 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 111/257 (43%), Gaps = 38/257 (14%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + +D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + LN E+ L Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLQS-----------LNDDEMRQLLKR 174 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 Q A L GLA D+A + + G R LL + + A + TI + +A+ Sbjct: 175 AQEIA-LDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAAASSRITTIDADFVSSAMT 233 Query: 252 RLA--IDKMG---FDQL 263 A DK G +DQ+ Sbjct: 234 LNARRFDKGGDNFYDQI 250 >gi|42783528|ref|NP_980775.1| recombination factor protein RarA [Bacillus cereus ATCC 10987] gi|42739457|gb|AAS43383.1| ATPase, AAA family [Bacillus cereus ATCC 10987] Length = 428 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|67482225|ref|XP_656462.1| AAA family ATPase [Entamoeba histolytica HM-1:IMSS] gi|56473665|gb|EAL51080.1| AAA family ATPase, putative [Entamoeba histolytica HM-1:IMSS] Length = 429 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 34/254 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ +E+ GQ++ ++ I +D ++F GPPG GKTT +++ R +F Sbjct: 34 RPQKIEDVVGQLKVRDDI---IHQVTVLGR-VDSMIFFGPPGCGKTTFCKLIKRHFEKSF 89 Query: 83 RSTSGPVIA-------KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 G I K G + + ++FIDEIH +S V+ L +++ + Sbjct: 90 IELDGNSINTNIVKDFKKGIIKKNKETTHSQTIIFIDEIHCISSTVQNFLIDLIKEKTIC 149 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR- 194 L+ G + + LS+ L+ RV +L RLN E+ +K I++R Sbjct: 150 LI---GTTTQVPSFCLSKELLLFM--RVIVLE-----------RLN--EV-SVKEIIKRA 190 Query: 195 -GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 A+ + V+DE +I S G R+A L ++ AE+ ++ + + + Sbjct: 191 INAEYSKYIVSDEVIDKIVESSDGDGRMALNNLEKLIQCAELEKVNEVSIKFVHEVIGKR 250 Query: 254 AI--DKMGFDQLDL 265 A+ DK G + +L Sbjct: 251 ALNYDKRGDEHYNL 264 >gi|326388123|ref|ZP_08209726.1| recombination factor protein RarA [Novosphingobium nitrogenifigens DSM 19370] gi|326207289|gb|EGD58103.1| recombination factor protein RarA [Novosphingobium nitrogenifigens DSM 19370] Length = 443 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL++ GQ + + A K L ++ GPPG GKT++A+++A + Sbjct: 29 LRPRTLDDVIGQDHLTGPDGAIGRMVAAGK-----LSSMILWGPPGTGKTSIARLLADAV 83 Query: 79 GVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 G+ + S S V + DL A + L R +LF+DEIHR + ++ P +E Sbjct: 84 GMRYVSISA-VFSGVADLRKAFAEAESMAGLGRRTLLFVDEIHRFNRAQQDGFLPYVE 140 >gi|78059884|ref|YP_366459.1| recombination factor protein RarA [Burkholderia sp. 383] gi|77964434|gb|ABB05815.1| Recombination protein MgsA [Burkholderia sp. 383] Length = 434 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 16/118 (13%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L++ GQ A L+ E+ K + ++F GPPG+GKTTLA++ A+ Sbjct: 17 LRPTSLDDVIGQAHLLGAGMPLRRAFESGKPHS-----MIFWGPPGVGKTTLARLTAQAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129 F + S V+ D+ A+ + R ++F+DEIHR + + L P++ Sbjct: 72 DCEFAALSA-VLGGVKDIRAVTARAQQLFDEAGRRTIVFVDEIHRFNETQQGALLPSV 128 >gi|14349166|dbj|BAB60709.1| Werner helicase interacting protein [Homo sapiens] Length = 665 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ +A L+ +E + + + GPPG GKTTLA ++A Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLNLWGPPGCGKTTLAHIIASNS 285 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + ++ P Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375 >gi|222151512|ref|YP_002560668.1| hypothetical protein MCCL_1265 [Macrococcus caseolyticus JCSC5402] gi|222120637|dbj|BAH17972.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 419 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 3/110 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+++ GQ + +A+ L ++ GPPG+GKT++AQ +A + Sbjct: 8 MRPNTIDDIIGQAHLVGPRGIIRRMVEAKR--LSSMILYGPPGIGKTSIAQAIAGSTNLK 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + K L A + + +L +DEIHRL ++ L P +E Sbjct: 66 FRQLNAVTNTKKDMQLIAEEAKMSGQVILLLDEIHRLDKGKQDFLLPHLE 115 >gi|166712096|ref|ZP_02243303.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzicola BLS256] Length = 458 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 16/138 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL++ GQ + S L+ E+ + + ++ GPPG GKTTLA ++A Sbjct: 29 MRPRTLDDMVGQKRLLAPDSALRRAFESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F++ S V++ ++ +L + R VLF+DE+HR + ++ P +E Sbjct: 84 DAEFKAISA-VLSGLPEVRQVLAEADQRFADGRRTVLFVDEVHRFNKAQQDAFLPHIERG 142 Query: 133 QLDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 143 TI-LFVGATTENPSFELN 159 >gi|116333872|ref|YP_795399.1| recombination factor protein RarA [Lactobacillus brevis ATCC 367] gi|116099219|gb|ABJ64368.1| Recombination protein MgsA [Lactobacillus brevis ATCC 367] Length = 425 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ LE+ GQ + + K+ A A+ L ++ GPPG GKT++A +A Sbjct: 10 MRPQRLEDIVGQQDLVAPGKII--ARMVAAKLLSSMILYGPPGTGKTSIASAIAGSTQYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DEIHRL ++ L P +E ++ +++G Sbjct: 68 FRKLNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRI-VLIGA 126 Query: 141 GPSARSVKIN 150 + IN Sbjct: 127 TTENPYININ 136 >gi|218295885|ref|ZP_03496665.1| AAA ATPase central domain protein [Thermus aquaticus Y51MC23] gi|218243623|gb|EED10151.1| AAA ATPase central domain protein [Thermus aquaticus Y51MC23] Length = 419 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 59/120 (49%), Gaps = 9/120 (7%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E GQ L+ +EA + L ++ GPPG GKTTLA ++A Sbjct: 8 LRPRTLDEVLGQPHLTGERGLLRRMLEAKR-----LASMVLFGPPGTGKTTLAHLLAEGA 62 Query: 79 GVNF-RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 G F R ++ K A E VLF+DEIHR + ++ L P +E L L+ Sbjct: 63 GKPFLRLSAVEAGLKEVRQAVERARQEGGLVLFLDEIHRFNKAQQDALLPHLESGLLTLI 122 >gi|193212966|ref|YP_001998919.1| recombination factor protein RarA [Chlorobaculum parvum NCIB 8327] gi|193086443|gb|ACF11719.1| AAA ATPase central domain protein [Chlorobaculum parvum NCIB 8327] Length = 452 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 26/163 (15%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+++E GQ V ++ ++E + + ++F GPPG GKTTLA++ A L Sbjct: 34 VRPRSIDELFGQEHLVGPGGPVRSYLEQGR-----IPSMIFWGPPGSGKTTLAEICAGSL 88 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDV-LFIDEIHRLSIIVEEILYPAMEDF 132 F S + + ++A +++ R + LFIDEIHR + ++ L A+E Sbjct: 89 NYRFEQLSATDAGVKDVRRVLEVAQKSRSIDGRQMLLFIDEIHRFNKAQQDTLLHAIEQ- 147 Query: 133 QLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 L +++G E PS + LSR + + NPL + Sbjct: 148 GLIVLIGATTENPSFEVNRALLSRMQV--------YILNPLSE 182 >gi|229186639|ref|ZP_04313800.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1] gi|118418782|gb|ABK87201.1| Recombination protein MgsA [Bacillus thuringiensis str. Al Hakam] gi|228596898|gb|EEK54557.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1] Length = 474 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 88/350 (25%), Positives = 136/350 (38%), Gaps = 65/350 (18%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++R+ L V + +RP ++E GQ K+ +A ++ G Sbjct: 37 IERDYTLRETVKMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119 PPG GKT++A +A G FR + V D+ ++ + VL +DE+HRL Sbjct: 95 PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178 ++ L P +E L TLI ATT +NP I Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188 Query: 179 RLNFYEI----ED-----LKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLL 226 R +E+ ED LK ++ K G + VT EA A S G R A L Sbjct: 189 RCQIFELHALTEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNAL 248 Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282 + F A IT EIA+ L + + DK G D+ L+ ++ G V Sbjct: 249 ELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306 Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 A+ L +I+ G +Q GR L+ +A++ +G+ P Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340 >gi|194017275|ref|ZP_03055887.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus ATCC 7061] gi|194011143|gb|EDW20713.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus ATCC 7061] Length = 421 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 5/112 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+ GQ ++ +A+ L ++ GPPG+GKT++A +A + Sbjct: 8 MRPSHIEDIIGQEHLVGEGQIIKRMVEAKH--LSSMILYGPPGIGKTSIATAIAGSTSIA 65 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 FR+ + VI D+ A+ + + +L +DE+HRL ++ L P +E+ Sbjct: 66 FRTLNA-VIHNKKDMEAVAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116 >gi|225869353|ref|YP_002745301.1| ATPase [Streptococcus equi subsp. zooepidemicus] gi|225702629|emb|CAX00692.1| putative ATPase [Streptococcus equi subsp. zooepidemicus] Length = 423 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+ E GQ K+ KA L ++ GPPG+GKT++A +A Sbjct: 9 MRPRTITEVIGQQHLVGEGKIIDRMVKA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + + IA+ + L VL +DEIHRL ++ L P +E Sbjct: 67 FRTFNATIDNKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKSKQDFLLPLLEHGH 119 Query: 134 LDLMVG 139 + +M+G Sbjct: 120 I-IMIG 124 >gi|86749444|ref|YP_485940.1| recombination factor protein RarA [Rhodopseudomonas palustris HaA2] gi|86572472|gb|ABD07029.1| Recombination protein MgsA [Rhodopseudomonas palustris HaA2] Length = 444 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L + GQ R L ++F GPPG GKTT+A+++A ++ Sbjct: 30 LRPRVLADVVGQDHILGPDGALTRMLATRT--LGSLVFWGPPGTGKTTVARLLADATELH 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + R +LF+DE+HR + ++ P MED + Sbjct: 88 FEQISA-VFSGVADLKKVFDAARARREMGRGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 146 VLVGATTENPSFELN 160 >gi|325954336|ref|YP_004237996.1| ATPase AAA [Weeksella virosa DSM 16922] gi|323436954|gb|ADX67418.1| AAA ATPase central domain protein [Weeksella virosa DSM 16922] Length = 424 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 26/155 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP++L+++ Q E A R + + ++F GPPG GKTTLAQ++A Sbjct: 9 MRPKSLDQYINQKHLLG------ENAPIRMMLQHDMIASMIFWGPPGTGKTTLAQLIAEL 62 Query: 78 LGVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 F + S VI KA T E +LFIDEIHR + ++ L A Sbjct: 63 SNRPFYTLSAINAGVKDVREVIDKAKSQNLFTT--EKNPILFIDEIHRFNKSQQDSLLSA 120 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSR---FTLIA 158 +E + L+ E PS V LSR +TL A Sbjct: 121 VEKGYITLIGATTENPSFEVVPALLSRAQVYTLHA 155 >gi|269986185|gb|EEZ92497.1| Replication factor C [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 315 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 36/235 (15%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76 I RP++ +E GQ E LK A A + + H++ GPPG+GKTT A V+A+ Sbjct: 5 IEKYRPQSFDEIIGQKEIVEKLK-----AMAEKKEIQHMILSGPPGVGKTTSAVVLAKAV 59 Query: 77 ----------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 EL + + K + A ++ DE L+ ++ L Sbjct: 60 FGPDWTQNFIELNASDDRKLSVIQGKVKEFARTKPIDAPFKIILFDEADSLTQEAQQALR 119 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ME++ IN RF + + PLQ R I +R E Sbjct: 120 RMMEEY----------------INTCRFVF--SVNYQSNIIEPLQSRCAI-LRFQPLSKE 160 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 D+ ++R A+ L + EA + SRG R L++ + + ++ AK + Sbjct: 161 DVHKFIKRIAESEKLDIDKEAMDALDYVSRGDLRTLVNLMQSLSNVSKKIDAKAV 215 >gi|15602122|ref|NP_245194.1| recombination factor protein RarA [Pasteurella multocida subsp. multocida str. Pm70] gi|12720486|gb|AAK02341.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 445 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 17/120 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD--HV---LFVGPPGLGKTTLAQVVAR 76 +RP T ++ GQ I K +ALD HV + GPPG GKTTLA+++A Sbjct: 20 MRPTTFAQYCGQSH-------LIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIAH 72 Query: 77 ELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++ + TSG I +A + A E R +LF+DE+HR + ++ P +ED Sbjct: 73 QIHADVERISAVTSGIKEIREAIERAKENRLAERRTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|296535676|ref|ZP_06897851.1| replication-associated recombination protein A [Roseomonas cervicalis ATCC 49957] gi|296264000|gb|EFH10450.1| replication-associated recombination protein A [Roseomonas cervicalis ATCC 49957] Length = 463 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E GQ E + I R AL ++ GPPG+GKTT+A+++A G+ Sbjct: 38 LRPRALPEVVGQ-EHLLGPEGAITRMLERG-ALASLILWGPPGVGKTTIARLLAEAAGLR 95 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V + DL R +LF+DEIHR + ++ P +ED + Sbjct: 96 FAALSA-VFSGVADLKKAFDEARARRRAGQGTLLFVDEIHRFNRAQQDGFLPVVEDGTVT 154 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 155 LVGATTENPS 164 >gi|229158015|ref|ZP_04286086.1| hypothetical protein bcere0010_41940 [Bacillus cereus ATCC 4342] gi|228625468|gb|EEK82224.1| hypothetical protein bcere0010_41940 [Bacillus cereus ATCC 4342] Length = 428 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|162382774|ref|YP_896708.2| recombination factor protein RarA [Bacillus thuringiensis str. Al Hakam] gi|196044812|ref|ZP_03112046.1| ATPase, AAA family [Bacillus cereus 03BB108] gi|225866381|ref|YP_002751759.1| ATPase, AAA family [Bacillus cereus 03BB102] gi|196024300|gb|EDX62973.1| ATPase, AAA family [Bacillus cereus 03BB108] gi|225786800|gb|ACO27017.1| ATPase, AAA family [Bacillus cereus 03BB102] Length = 426 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|229198526|ref|ZP_04325230.1| hypothetical protein bcere0001_40540 [Bacillus cereus m1293] gi|228585029|gb|EEK43143.1| hypothetical protein bcere0001_40540 [Bacillus cereus m1293] Length = 428 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|227513090|ref|ZP_03943139.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri ATCC 11577] gi|227083665|gb|EEI18977.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri ATCC 11577] Length = 424 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +EE GQ + K+ KA+ L ++ GPPG GKT++A +A Sbjct: 9 MRPTKIEEIVGQQDLVGPGKIISRMVKAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + K DL ++ + VL +DEIHRL ++ L P +E + +++G Sbjct: 67 FRVLNAATDTKK-DLQVVVEEAKMSGTVVLLLDEIHRLDKTKQDFLLPLLEKGAI-ILIG 124 Query: 140 EGPSARSVKIN 150 + IN Sbjct: 125 ATTENPYININ 135 >gi|218905594|ref|YP_002453428.1| ATPase, AAA family [Bacillus cereus AH820] gi|228917033|ref|ZP_04080593.1| hypothetical protein bthur0012_42450 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929444|ref|ZP_04092465.1| hypothetical protein bthur0010_41290 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229123940|ref|ZP_04253132.1| hypothetical protein bcere0016_42250 [Bacillus cereus 95/8201] gi|301055907|ref|YP_003794118.1| ATPase, AAA family [Bacillus anthracis CI] gi|218539593|gb|ACK91991.1| ATPase, AAA family [Bacillus cereus AH820] gi|228659242|gb|EEL14890.1| hypothetical protein bcere0016_42250 [Bacillus cereus 95/8201] gi|228830232|gb|EEM75848.1| hypothetical protein bthur0010_41290 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842640|gb|EEM87728.1| hypothetical protein bthur0012_42450 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300378076|gb|ADK06980.1| ATPase, AAA family [Bacillus cereus biovar anthracis str. CI] Length = 428 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|229032049|ref|ZP_04188032.1| hypothetical protein bcere0028_40940 [Bacillus cereus AH1271] gi|228729294|gb|EEL80288.1| hypothetical protein bcere0028_40940 [Bacillus cereus AH1271] Length = 428 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|324328302|gb|ADY23562.1| recombination factor protein RarA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 428 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|289450570|ref|YP_003475446.1| recombination factor protein RarA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185117|gb|ADC91542.1| recombination factor protein RarA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 433 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 29/231 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + P ++E++ GQ + L+ I+ K L ++ GPPG GK++LA+V+A Sbjct: 10 MAPASVEQYVGQSHLLAPGKLLRRMIDGDK-----LSSIILFGPPGTGKSSLAKVIAATT 64 Query: 79 GVNFRS----TSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 + F+ T+G K D A L E + +LFIDEIHR + + ++ L P++E Sbjct: 65 KLPFKRLNAVTAGVTDIKQIIADAANPLLTPEGQVILFIDEIHRFNKLQQDALLPSVEA- 123 Query: 133 QLDLMVG---EGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFYE 184 L +++G E P K +SR T+ ++ T + +L L G L ++ Sbjct: 124 GLVILIGATTENPYFEVNKALISRATVFQLFPLSETDILTILRRSLTSERG----LAAWQ 179 Query: 185 IEDLKTIVQRGAK-LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 E +T +Q A G A A E+A+ S P AG L V D AE Sbjct: 180 AEVEETALQFIANHCNGDARIALNALELAVCST-QPDAAGTLHVTVNDVAE 229 >gi|33597977|ref|NP_885620.1| recombination factor protein RarA [Bordetella parapertussis 12822] gi|33602883|ref|NP_890443.1| recombination factor protein RarA [Bordetella bronchiseptica RB50] gi|33574406|emb|CAE38744.1| conserved hypothetical protein [Bordetella parapertussis] gi|33577325|emb|CAE35882.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 459 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL + GQ L+V ++ + + ++F GPPG+GKTTLA+++A Sbjct: 35 LRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHS-----MIFWGPPGVGKTTLARLMADGF 89 Query: 79 GVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED- 131 F + S V+ D+ A + R +LF+DE+HR + ++ P +E Sbjct: 90 DAQFIAISA-VLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESG 148 Query: 132 -FQLDLMVGEGPSARSVKINLSR 153 F E PS LSR Sbjct: 149 LFTFIGATTENPSFEVNSALLSR 171 >gi|318606281|emb|CBY27779.1| ATPase, AAA family [Yersinia enterocolitica subsp. palearctica Y11] Length = 444 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLE++ GQ + K A A L ++ GPPG GKTTLA+++ R + Sbjct: 17 MRPLTLEQYIGQQHLLAPGKPLSRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 75 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163 >gi|58337096|ref|YP_193681.1| recombination factor protein RarA [Lactobacillus acidophilus NCFM] gi|227903667|ref|ZP_04021472.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796] gi|58254413|gb|AAV42650.1| chromosomal segregation helicase [Lactobacillus acidophilus NCFM] gi|227868554|gb|EEJ75975.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796] Length = 439 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ ++E GQ K+ +AR L ++ GPPG+GKT++A +A Sbjct: 8 MRPKKIDEVVGQQHLIGPGKIIRRMVEARI--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR + +A+ G ++ + +L +DEIHRL ++ L P +E Q Sbjct: 66 FRKLNAATDGKKQLQQVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLESGQ 118 Query: 134 LDLM 137 + L+ Sbjct: 119 IILI 122 >gi|84394177|ref|ZP_00992908.1| hypothetical protein V12B01_03078 [Vibrio splendidus 12B01] gi|84375197|gb|EAP92113.1| hypothetical protein V12B01_03078 [Vibrio splendidus 12B01] Length = 449 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 89/221 (40%), Gaps = 25/221 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPETVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + E PS LSR RV LT+ D + IR IED Q Sbjct: 138 FIGATTENPSFELNNALLSR-------ARVYKLTSLHTDDISLVIRQ---AIED----KQ 183 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 RG D +A G R++ L + D AE Sbjct: 184 RGLGDVTADFADNVLDRLAELVNGDARMSLNYLELLYDMAE 224 >gi|326692254|ref|ZP_08229259.1| recombination factor protein RarA [Leuconostoc argentinum KCTC 3773] Length = 427 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 3/110 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +EE GQ K+ A+ L ++ GPPG+GKT++A +A Sbjct: 9 MRPTKIEEIVGQQHLVGEGKIIWRMVAAKR--LSSMILYGPPGIGKTSIASAIAGSSKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + ++ + A + VL +DEIHRL+ + ++ L P +E Sbjct: 67 FRMLNAATDSQKDLQIVAEEAKMSGAVVLLLDEIHRLNKVKQDFLLPYLE 116 >gi|313157357|gb|EFR56780.1| recombination factor protein RarA [Alistipes sp. HGB5] Length = 424 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+T++++ GQ V + F E + + GPPG+GKTTLA++VA +L Sbjct: 9 LRPKTIDDYIGQEHLVGKNGVFRKFFETGN-----VPSFILWGPPGVGKTTLAKIVATQL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S V + D+ ++ + + + LFIDEIHR + ++ L A+E Sbjct: 64 ERPFFTLSA-VTSGVKDVREVIESAKKQRFFDAKPPFLFIDEIHRFNKSQQDSLLGAVEQ 122 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 123 GTVTLIGATTENPSFEVISPLLSR 146 >gi|311069237|ref|YP_003974160.1| recombination factor protein RarA [Bacillus atrophaeus 1942] gi|310869754|gb|ADP33229.1| recombination factor protein RarA [Bacillus atrophaeus 1942] Length = 422 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 3/111 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+ GQ K+ +A+ L ++ GPPG+GKT++A +A + Sbjct: 8 MRPTKIEDIIGQQHLVGKDKIIGRMVQAKH--LSSMILYGPPGIGKTSIATAIAGSTSIA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 FR + + K ++ A + + +L +DE+HRL ++ L P +E+ Sbjct: 66 FRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116 >gi|296284437|ref|ZP_06862435.1| Microtubule-severing ATPase [Citromicrobium bathyomarinum JL354] Length = 411 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 83/201 (41%), Gaps = 46/201 (22%) Query: 21 LLRPR----TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKT 68 ++ PR T ++F G + K IE R + L+ + LF GPPG GKT Sbjct: 145 MVEPREGGLTFDDFGGYKGVVARAKELIETQLERRDELEKIGARPVKGILFTGPPGTGKT 204 Query: 69 TLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--------EDRDVLFIDEIHRLS 118 LA+++A + G +F SGP I GD LL + + ++F DEI Sbjct: 205 HLARIIANQAGASFYDISGPAIVSKWLGDTEELLRKIFEHAKSADSGKAIIFFDEIDS-- 262 Query: 119 IIVEEILYPAMEDFQ------LDLMVGEGPSARSVKINLSRFTLIAATTRVG----LLTN 168 I E + E + L LM G S + +IAAT R LT Sbjct: 263 -IAENRSGDSQESSRRLVAQFLTLMDGFDTSKNAT-------VVIAATNRADALDPALTR 314 Query: 169 P----LQDRFGIPIRLNFYEI 185 P + FG+P ++ YEI Sbjct: 315 PGRFDWEIEFGLPDLMDRYEI 335 >gi|195978892|ref|YP_002124136.1| recombination factor protein RarA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975597|gb|ACG63123.1| ATPase AAA family recombination factor RarA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 423 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+ E GQ K+ KA L ++ GPPG+GKT++A +A Sbjct: 9 MRPRTITEVIGQQHLVGEGKIIDRMVKA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + + IA+ + L VL +DEIHRL ++ L P +E Sbjct: 67 FRTFNATIDNKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKSKQDFLLPLLEHGH 119 Query: 134 LDLMVG 139 + +M+G Sbjct: 120 I-IMIG 124 >gi|170016573|ref|YP_001727492.1| ATPase [Leuconostoc citreum KM20] gi|169803430|gb|ACA82048.1| ATPase [Leuconostoc citreum KM20] Length = 430 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 29/209 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+ GQ + K+ A+ L ++ GPPG GKT++A +A Sbjct: 11 MRPNKIEDIVGQQHLVGSGKIIWRMVAAKR--LSSMILYGPPGTGKTSIASAIAGSSKYA 68 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + ++ + A + VL +DEIHRL+ + ++ L P +E + L+ Sbjct: 69 FRVLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIHRLNKVKQDFLLPHLESGAIILI--- 125 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK--L 198 G + + IN++ I + T++ +T PL + +D+K+ V R K Sbjct: 126 GATTENPYINVT--PAIRSRTQIFQVT-PLTE-------------DDIKSAVHRALKDDT 169 Query: 199 TGLA-----VTDEAACEIAMRSRGTPRIA 222 GL +TD+A +A + G R A Sbjct: 170 HGLGKYKVTLTDDAMNHLAQATNGDLRSA 198 >gi|126662272|ref|ZP_01733271.1| ATPase, AAA family protein [Flavobacteria bacterium BAL38] gi|126625651|gb|EAZ96340.1| ATPase, AAA family protein [Flavobacteria bacterium BAL38] Length = 428 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 13/108 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG---------PVIAKAGDLAALLTNLEDRD 107 ++ GPPG GKTTLAQ++A+E F S VI KA + L T Sbjct: 42 LILWGPPGTGKTTLAQIMAQESKRPFYQLSAIHSGVKDIREVIEKAKQSSGLFT--AKNP 99 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR 153 +LFIDEIHR S ++ L A+E + L+ E PS + LSR Sbjct: 100 ILFIDEIHRFSKSQQDSLLAAVEKGWITLIGATTENPSFEVIPALLSR 147 >gi|92117125|ref|YP_576854.1| recombination factor protein RarA [Nitrobacter hamburgensis X14] gi|91800019|gb|ABE62394.1| Recombination protein MgsA [Nitrobacter hamburgensis X14] Length = 446 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L + GQ + R ++F GPPG GKTT+A+++A ++ Sbjct: 30 LRPRALSDVVGQDHILGPDGALTRMLETRT--FGSLVFWGPPGTGKTTVARLLADATALH 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL R +LF+DE+HR + ++ P MED + Sbjct: 88 FEQLSA-VFSGVADLKKAFDAARARRESGTGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 146 VLVGATTENPSFELN 160 >gi|305665149|ref|YP_003861436.1| putative AAA family ATPase protein [Maribacter sp. HTCC2170] gi|88709901|gb|EAR02133.1| putative AAA family ATPase protein [Maribacter sp. HTCC2170] Length = 425 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 15/143 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L+E+ Q K + ++ GPPG GKTTLA ++A E Sbjct: 9 VRPKSLKEYISQNHLVGEAGSLTHQIKKGI--IPSIILWGPPGTGKTTLANIIANESQRP 66 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S VI KA L T +LFIDEIHR S ++ L A+E Sbjct: 67 FYILSAINSGVKDIREVIDKAKQTGGLFT--AKNPILFIDEIHRFSKSQQDSLLGAVEKG 124 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147 >gi|229093470|ref|ZP_04224573.1| hypothetical protein bcere0021_41940 [Bacillus cereus Rock3-42] gi|228689941|gb|EEL43745.1| hypothetical protein bcere0021_41940 [Bacillus cereus Rock3-42] Length = 430 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|89891667|ref|ZP_01203170.1| ATPase related to the helicase subunit of the holliday junction resolvase [Flavobacteria bacterium BBFL7] gi|89516002|gb|EAS18666.1| ATPase related to the helicase subunit of the holliday junction resolvase [Flavobacteria bacterium BBFL7] Length = 431 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 64/147 (43%), Gaps = 23/147 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD----HVLFVGPPGLGKTTLAQVVARE 77 +RP+ L E+ Q E R L+ ++ GPPG GKTTLA ++A+E Sbjct: 10 IRPQNLSEYLSQNHLVG------ERGTLRQHILNGTIPSLILWGPPGTGKTTLANIIAQE 63 Query: 78 LGVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 F + S VI KA L T +LFIDEIHR S ++ L A Sbjct: 64 SKRPFYTLSAINSGVKDVREVIDKAKSAGGLFT--AKNPILFIDEIHRFSKSQQDSLLAA 121 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSR 153 +E + L+ E PS + LSR Sbjct: 122 VEKGWVTLIGATTENPSFEVIPALLSR 148 >gi|94991276|ref|YP_599376.1| recombination factor protein RarA [Streptococcus pyogenes MGAS10270] gi|94544784|gb|ABF34832.1| ATPase, AAA family [Streptococcus pyogenes MGAS10270] Length = 422 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + + +K + A L VL +DEIHRL I ++ L P +E+ + + Sbjct: 67 FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKIKQDFLLPLLENGTI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|134299288|ref|YP_001112784.1| recombination factor protein RarA [Desulfotomaculum reducens MI-1] gi|134051988|gb|ABO49959.1| Recombination protein MgsA [Desulfotomaculum reducens MI-1] Length = 438 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 8/102 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR++++F GQ K+ A +A + L ++ GPPG GKTTLA +++ N Sbjct: 20 MRPRSIDDFIGQEHIVGKGKLLRRAIEA--DKLGSIILYGPPGSGKTTLATIISEMTEAN 77 Query: 82 F---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRL 117 F + S V ++ NL R + FIDEIH L Sbjct: 78 FVKINAVSAGVAEIRTEIKKARDNLNFYGKRTIFFIDEIHSL 119 >gi|322411007|gb|EFY01915.1| recombination factor protein RarA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 429 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQEHLVGEGKIIHRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|91782394|ref|YP_557600.1| recombination factor protein RarA [Burkholderia xenovorans LB400] gi|296162243|ref|ZP_06845038.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1] gi|91686348|gb|ABE29548.1| Recombination protein MgsA [Burkholderia xenovorans LB400] gi|295887510|gb|EFG67333.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1] Length = 437 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 119/264 (45%), Gaps = 54/264 (20%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR ++E GQ L+V E+ +A + ++ GPPG+GKTTLA+++A Sbjct: 15 LRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHS-----MILWGPPGVGKTTLARLMADAF 69 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S + I +A + A + + ++F+DE+HR + ++ P +E Sbjct: 70 HAEFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 128 Query: 134 LDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 L + VG S ++N LSR AA + LT+ E+ + Sbjct: 129 LFVFVGATTENPSFEVNSALLSR----AAVYVLKSLTD-----------------EEQRE 167 Query: 191 IVQRGAK-LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 +++R K L GL TDEA + + G R +LL + A A + T EI D A Sbjct: 168 LLERAQKELGGLTFTDEARDALIGSADGDGR---KLLNNLEIVARAASQQKTT-EI-DGA 222 Query: 250 LLRLAI-------DKMG---FDQL 263 LL A+ DK G +DQ+ Sbjct: 223 LLGSALAENLRRFDKGGDAFYDQI 246 >gi|33593454|ref|NP_881098.1| recombination factor protein RarA [Bordetella pertussis Tohama I] gi|33572810|emb|CAE42743.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332382863|gb|AEE67710.1| recombination factor protein RarA [Bordetella pertussis CS] Length = 446 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL + GQ L+V ++ + + ++F GPPG+GKTTLA+++A Sbjct: 22 LRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHS-----MIFWGPPGVGKTTLARLMADGF 76 Query: 79 GVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED- 131 F + S V+ D+ A + R +LF+DE+HR + ++ P +E Sbjct: 77 DAQFIAISA-VLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESG 135 Query: 132 -FQLDLMVGEGPSARSVKINLSR 153 F E PS LSR Sbjct: 136 LFTFIGATTENPSFEVNSALLSR 158 >gi|323466848|gb|ADX70535.1| ATPase, AAA family [Lactobacillus helveticus H10] Length = 437 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L++ GQ + K+ +AR L ++ GPPG+GKT++A +A Sbjct: 8 MRPQNLDQVVGQQHLIGSGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + K A + +L +DEIHRL ++ L P +E Q+ L+ Sbjct: 66 FRKLNAATDGKKQLQQVAAEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIILI 122 >gi|315179811|gb|ADT86725.1| recombination factor protein RarA [Vibrio furnissii NCTC 11218] Length = 449 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 9/147 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHVLGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S AA+ E+ R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSAVTSGVKEIRAAIEKARENKLAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138 Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165 >gi|91977623|ref|YP_570282.1| recombination factor protein RarA [Rhodopseudomonas palustris BisB5] gi|91684079|gb|ABE40381.1| Recombination protein MgsA [Rhodopseudomonas palustris BisB5] Length = 443 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L + GQ R L ++F GPPG GKTT+A+++A ++ Sbjct: 30 LRPRALGDVVGQDHILGPDGALTRMLATRT--LGSLVFWGPPGTGKTTVARLLADATELH 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + R +LF+DE+HR + ++ P MED + Sbjct: 88 FEQISA-VFSGVADLKKVFDAARARREMGTGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 146 VLVGATTENPSFELN 160 >gi|116670830|ref|YP_831763.1| recombination factor protein RarA [Arthrobacter sp. FB24] gi|116610939|gb|ABK03663.1| Recombination protein MgsA [Arthrobacter sp. FB24] Length = 474 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 16/137 (11%) Query: 22 LRPRTLEEFTGQVE------ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 +RPRTL++ GQ L A A ++ GPPG GKTTLA V+A Sbjct: 43 MRPRTLDDVVGQQHLLGQGSPLRQLAAGAGADSAGPAGPTSLILWGPPGTGKTTLAHVIA 102 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPA 128 + G F S + A D+ ++ + L RD VLF+DEIHR + ++ L P Sbjct: 103 KGPGRKFVELSA-ITAGVKDVRRVMDDALTARDLYKTTTVLFLDEIHRFNKAQQDALLPG 161 Query: 129 MEDFQLDLMVG--EGPS 143 +E+ + L+ E PS Sbjct: 162 VENRWVVLVAATTENPS 178 >gi|238789330|ref|ZP_04633117.1| Replication-associated recombination protein A [Yersinia frederiksenii ATCC 33641] gi|238722662|gb|EEQ14315.1| Replication-associated recombination protein A [Yersinia frederiksenii ATCC 33641] Length = 444 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLE++ GQ + K A A L ++ GPPG GKTTLA+++ R + Sbjct: 17 MRPLTLEQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 75 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163 >gi|319941979|ref|ZP_08016300.1| AAA ATPase central domain-containing protein [Sutterella wadsworthensis 3_1_45B] gi|319804632|gb|EFW01502.1| AAA ATPase central domain-containing protein [Sutterella wadsworthensis 3_1_45B] Length = 468 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 18/164 (10%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL+E GQ + + L+V E + + ++ GPPG+GKTT+A+++A Sbjct: 41 MRPQTLDEVIGQKKLLGPGAPLRVAFENRRPHS-----MILWGPPGVGKTTIARLMANAF 95 Query: 79 GVNFRSTSGPV-----IAKAGDLAA-LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 + F + S + I +A D A L + V+F+DE+HR S ++ P +E Sbjct: 96 DLPFIAISAVLGGVKDIREAVDAAKQTLAATQRPTVVFVDEVHRFSKSQQDAFLPHVES- 154 Query: 133 QLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173 L + VG E PS V LSR T+ + T L DR Sbjct: 155 GLFIFVGATTENPSFEVVNALLSRATVYQLESLSKEETGELIDR 198 >gi|296185466|ref|ZP_06853876.1| recombination factor protein RarA [Clostridium carboxidivorans P7] gi|296050300|gb|EFG89724.1| recombination factor protein RarA [Clostridium carboxidivorans P7] Length = 421 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 10/139 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ + + L +++F GPPG GKTT+A ++A G Sbjct: 8 IRPKNLDEVIGQKHLLGEGKILQDMISSGH--LMNMIFYGPPGTGKTTVANIIASATGKK 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + D+ ++ +L + +L+IDEIH + +++ L +E+ Q+ L Sbjct: 66 FYKLNATTDS-LKDIKDIIKDLNTIMGYNGVILYIDEIHHFTKRIQQSLLEFIENGQITL 124 Query: 137 M--VGEGPSARSVKINLSR 153 + E P K LSR Sbjct: 125 IGSTTENPYFYIFKAILSR 143 >gi|330466933|ref|YP_004404676.1| recombination factor protein RarA [Verrucosispora maris AB-18-032] gi|328809904|gb|AEB44076.1| recombination factor protein RarA [Verrucosispora maris AB-18-032] Length = 503 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 26/185 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+E GQ + + L+ + +A V+ GPPG GKTT+A +VA Sbjct: 41 MRPATLDELVGQDHLLAPGAPLRQLVTG-----DAPMSVILWGPPGSGKTTIAHLVAAAT 95 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 F + S + A D+ A++ + VLFIDE+HR S ++ L A+ED Sbjct: 96 DRRFVAMSA-LSAGVKDVRAVIDTARRQRRSGGPPTVLFIDEVHRFSKTQQDSLLAAVED 154 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLIA------ATTRVGLLTNPLQDRFGIPIRLNF- 182 + L+ E P + LSR L+ A R GLL + D G+ L Sbjct: 155 RTVTLLAATTENPYFSVISPLLSRCVLLTLQPLDDAAVR-GLLRRAMTDERGLAGALTLD 213 Query: 183 YEIED 187 E ED Sbjct: 214 SEAED 218 >gi|332162218|ref|YP_004298795.1| recombination factor protein RarA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666448|gb|ADZ43092.1| recombination factor protein RarA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 444 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLE++ GQ + K A A L ++ GPPG GKTTLA+++ R + Sbjct: 17 MRPLTLEQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 75 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163 >gi|327439662|dbj|BAK16027.1| ATPase [Solibacillus silvestris StLB046] Length = 426 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 111/260 (42%), Gaps = 53/260 (20%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRT+ E GQ + + + L IE + +L GPPG+GKT++A +A Sbjct: 10 MRPRTIHEVVGQQHIIGSATPLFRMIEKGHVPS-----MLLYGPPGVGKTSIANAIAGSS 64 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 + F + + K D+ ++ + + + +LF+DEIHR + + ++ L P +E+ Sbjct: 65 KIPFFALNATHAGKK-DIEQIVMDARMSGKVLLFLDEIHRFNKLQQDTLLPHVEN----- 118 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLK 189 LI ATT NP D R G ++L +D+ Sbjct: 119 ---------------GSIVLIGATTE-----NPFHDVNPAIRSRCGEILQLERLTGDDII 158 Query: 190 TIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 ++ +RG + +T++ +IA S G R A LL V ++ TI Sbjct: 159 QLLNQALADKERGLGHLEIDITEQQIEKIANASNGDARKALTLLESVYYASDEKDGVTII 218 Query: 243 REIA-DAALLRLAI--DKMG 259 + A DA R+ + DK G Sbjct: 219 NDNAIDALAKRIGVFGDKGG 238 >gi|300722522|ref|YP_003711812.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Xenorhabdus nematophila ATCC 19061] gi|297629029|emb|CBJ89614.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Xenorhabdus nematophila ATCC 19061] Length = 447 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ + GQ + K A RA L ++ GPPG GKTTLA+++ + Sbjct: 20 MRPVTLDNYIGQSHLLAEGKPLSRAI--RAGHLHSMILWGPPGTGKTTLAEIMGYYAQAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I ++ + A N R +LF+DE+HR + ++ P +ED + Sbjct: 78 IERISAVTSGIKEIRESIEKARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|238020918|ref|ZP_04601344.1| hypothetical protein GCWU000324_00815 [Kingella oralis ATCC 51147] gi|237867898|gb|EEP68904.1| hypothetical protein GCWU000324_00815 [Kingella oralis ATCC 51147] Length = 436 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL E GQ E + + A A E +L+ G G+GKTTLA++VA+ Sbjct: 17 LRPRTLAEVLGQ-EHLTGAGKPLAVALASGEPHSMILW-GSAGIGKTTLARIVAQGFDAQ 74 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130 F S V + D+ +T E R +LF+DE+HR + ++ P +E Sbjct: 75 FLPISA-VFSGVKDIREAITQAEMAWQRGKRTILFVDEVHRFNKAQQDAFLPHVE 128 >gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis 768-20] gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis 768-20] Length = 328 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR+ EE E + LK F++A + H+LF GPPG GKTT+A V+AREL Sbjct: 13 RPRSFEEVVDLEEVKARLKEFVKAGN-----MPHLLFYGPPGTGKTTMALVLAREL 63 >gi|291301352|ref|YP_003512630.1| AAA ATPase central domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290570572|gb|ADD43537.1| AAA ATPase central domain protein [Stackebrandtia nassauensis DSM 44728] Length = 448 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+E GQ + S L+ + +A V+ GPPG GKTT+A +VAR Sbjct: 29 MRPATLDELVGQQHLLTPGSPLRQLVGG-----DAPLSVILWGPPGCGKTTVANLVARAT 83 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131 + S + A D+ A++ VLFIDE+HR + ++ L A+ED Sbjct: 84 DRRYVPMSA-LNAGVKDVRAVIETARATRRRGGAPTVLFIDEVHRFTKTQQDALLAAVED 142 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E P V LSR L+ Sbjct: 143 RTITLLAATTENPYFSVVSPLLSRCVLL 170 >gi|115350891|ref|YP_772730.1| recombination factor protein RarA [Burkholderia ambifaria AMMD] gi|115280879|gb|ABI86396.1| Recombination protein MgsA [Burkholderia ambifaria AMMD] Length = 436 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 42/259 (16%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + +D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + L D ++++ + Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLQS-LSD-------------DEMRQL 171 Query: 192 VQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 ++R + L GLA D+A + + G R LL + + A + TI + +A Sbjct: 172 LKRAQEIALDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAAASSRITTIDADFVSSA 231 Query: 250 LLRLA--IDKMG---FDQL 263 + A DK G +DQ+ Sbjct: 232 MTLNARRFDKGGDNFYDQI 250 >gi|297538757|ref|YP_003674526.1| AAA ATPase central domain-containing protein [Methylotenera sp. 301] gi|297258104|gb|ADI29949.1| AAA ATPase central domain protein [Methylotenera sp. 301] Length = 444 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 14/118 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E GQ + A L++ ++ K L ++ GPPG+GKTTLA+++A Sbjct: 18 LRPKTLDEVVGQSHLLAANKPLRLAFQSGK-----LPSMILWGPPGVGKTTLARLIANTA 72 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130 +F S + I +A + A L+ R +LF+DE+HR + ++ P +E Sbjct: 73 EADFIPISAVLSGIKDIREAVERAELILQQHGRKTILFVDEVHRFNKGQQDAFLPFVE 130 >gi|238763313|ref|ZP_04624277.1| Replication-associated recombination protein A [Yersinia kristensenii ATCC 33638] gi|238698412|gb|EEP91165.1| Replication-associated recombination protein A [Yersinia kristensenii ATCC 33638] Length = 447 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLE++ GQ + K A A L ++ GPPG GKTTLA+++ R + Sbjct: 20 MRPLTLEQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 138 IGATTENPSFELNSALLSRARVYLLKALT 166 >gi|227877291|ref|ZP_03995364.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus JV-V01] gi|256842853|ref|ZP_05548341.1| recombination factor protein RarA [Lactobacillus crispatus 125-2-CHN] gi|256848783|ref|ZP_05554217.1| recombination factor protein RarA [Lactobacillus crispatus MV-1A-US] gi|262045819|ref|ZP_06018783.1| recombination factor protein RarA [Lactobacillus crispatus MV-3A-US] gi|293381688|ref|ZP_06627669.1| recombination factor protein RarA [Lactobacillus crispatus 214-1] gi|227863147|gb|EEJ70593.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus JV-V01] gi|256614273|gb|EEU19474.1| recombination factor protein RarA [Lactobacillus crispatus 125-2-CHN] gi|256714322|gb|EEU29309.1| recombination factor protein RarA [Lactobacillus crispatus MV-1A-US] gi|260573778|gb|EEX30334.1| recombination factor protein RarA [Lactobacillus crispatus MV-3A-US] gi|290921735|gb|EFD98756.1| recombination factor protein RarA [Lactobacillus crispatus 214-1] Length = 435 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+E GQ K+ +AR L ++ GPPG+GKT++A +A Sbjct: 8 MRPTNLDEVVGQRHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR + +A+ G ++ + VL +DEIHRL ++ L P +E Q Sbjct: 66 FRKLNAATDGKKQLQQVAEEGKMSGTV-------VLLLDEIHRLDKTKQDFLLPLLESGQ 118 Query: 134 LDLM 137 + L+ Sbjct: 119 IILI 122 >gi|123441839|ref|YP_001005822.1| recombination factor protein RarA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088800|emb|CAL11606.1| putative ATPase protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 447 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TLE++ GQ + K A A L ++ GPPG GKTTLA+++ R + Sbjct: 20 MRPLTLEQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 138 IGATTENPSFELNSALLSRARVYLLKALT 166 >gi|302498881|ref|XP_003011437.1| hypothetical protein ARB_02287 [Arthroderma benhamiae CBS 112371] gi|291174988|gb|EFE30797.1| hypothetical protein ARB_02287 [Arthroderma benhamiae CBS 112371] Length = 551 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 21/167 (12%) Query: 9 SRNVSQEDADIS-LLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGL 65 S N Q+ A ++ +RPRTL+E GQ N L+ IE + + ++ G G Sbjct: 132 SSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIERDR-----VPSMILWGSAGT 186 Query: 66 GKTTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLS 118 GKTTLA+V+A +G F STS V A+ L A N + ++F DEIHR S Sbjct: 187 GKTTLARVIASMVGSRFVEINSTSSGV-AECKKLFAEAKNELSLTGRKTIIFCDEIHRFS 245 Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAAT 160 +++ +E Q+ L+ E PS + LSR FTL T Sbjct: 246 KSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 292 >gi|260768112|ref|ZP_05877046.1| ATPase AAA family [Vibrio furnissii CIP 102972] gi|260616142|gb|EEX41327.1| ATPase AAA family [Vibrio furnissii CIP 102972] Length = 449 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 9/147 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHVLGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S AA+ E+ R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSAVTSGVKEIRAAIEKARENKLAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138 Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165 >gi|260578811|ref|ZP_05846718.1| AAA family ATPase [Corynebacterium jeikeium ATCC 43734] gi|258603109|gb|EEW16379.1| AAA family ATPase [Corynebacterium jeikeium ATCC 43734] Length = 464 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ + S L+ I+ V+ GPPG GKTT+A ++++ Sbjct: 41 MRPRSLDEVVGQDKVLGPGSPLRRLIDG-----HGDTSVILYGPPGTGKTTIASLISQAS 95 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G F + S + + ++ A++ L + VLFIDE+HR S ++ L A+E+ Sbjct: 96 GRRFEALSA-LNSGVKEVRAIIEQARKRLVLGEHTVLFIDEVHRFSKTQQDALLSAVENR 154 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 155 TVLLVAATTENPS 167 >gi|34496831|ref|NP_901046.1| recombination factor protein RarA [Chromobacterium violaceum ATCC 12472] gi|34102686|gb|AAQ59051.1| probable ATPase associated with chromosome architecture [Chromobacterium violaceum ATCC 12472] Length = 443 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 53/324 (16%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ L++ GQ + L + + + K + ++ GPPG+GKTTLA+++A Sbjct: 17 LRPQALDQVIGQQHLIGPGKPLSLAVASGKPHS-----MILWGPPGVGKTTLARILAASF 71 Query: 79 GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F S V A D+ A+L R +LF+DE+HR + ++ P +E Sbjct: 72 DAEFIPISA-VFAGVKDIREAVEKAHAVLQRSGRRTILFVDEVHRFNKSQQDAFLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + +D E++ L Sbjct: 131 -GLITFIGATTENPSFEVN----SALLSRAQVYVLNSLSED-----------ELKQLFAR 174 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 + L GL D A + + G R LL + R A+ R +AD Sbjct: 175 ARTEGALDGLNFDDAAVSTLTGYADGDARRFLNLLEQTRTAAQA-------RGVAD---- 223 Query: 252 RLAIDKMGFDQLDLRYLTMIARNFG-GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310 ID +++ LT+ AR F GG + ISA R + D ++ + Sbjct: 224 ---IDPGFLEEV----LTLNARRFDKGGDAFYDQISALHKSVRGSNPDAALYWLSRMLDG 276 Query: 311 QRTPR--GRLLMPIAWQHLGIDIP 332 PR R ++ +AW+ +G+ P Sbjct: 277 GADPRYLARRIVRMAWEDIGLADP 300 >gi|327295304|ref|XP_003232347.1| AAA family ATPase [Trichophyton rubrum CBS 118892] gi|326465519|gb|EGD90972.1| AAA family ATPase [Trichophyton rubrum CBS 118892] Length = 550 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 21/167 (12%) Query: 9 SRNVSQEDADIS-LLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGL 65 S N Q+ A ++ +RPRTL+E GQ N L+ IE + + ++ G G Sbjct: 131 SSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIERDR-----VPSMILWGSAGT 185 Query: 66 GKTTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLS 118 GKTTLA+V+A +G F STS V A+ L A N + ++F DEIHR S Sbjct: 186 GKTTLARVIASMVGSRFVEINSTSSGV-AECKKLFAEAKNELSLTGRKTIIFCDEIHRFS 244 Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAAT 160 +++ +E Q+ L+ E PS + LSR FTL T Sbjct: 245 KSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 291 >gi|295692642|ref|YP_003601252.1| atpase, aaa family [Lactobacillus crispatus ST1] gi|295030748|emb|CBL50227.1| ATPase, AAA family [Lactobacillus crispatus ST1] Length = 435 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+E GQ K+ +AR L ++ GPPG+GKT++A +A Sbjct: 8 MRPTNLDEVVGQRHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR + +A+ G ++ + VL +DEIHRL ++ L P +E Q Sbjct: 66 FRKLNAATDGKKQLQQVAEEGKMSGTV-------VLLLDEIHRLDKTKQDFLLPLLESGQ 118 Query: 134 LDLM 137 + L+ Sbjct: 119 IILI 122 >gi|282891290|ref|ZP_06299792.1| hypothetical protein pah_c050o063 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498787|gb|EFB41104.1| hypothetical protein pah_c050o063 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 419 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 20/159 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + E GQ FI + + L +L+ GP G GKT++A++ A+ + Sbjct: 9 LRPSSFTEIVGQPHLLGP-DGFITRTIKQGKPLSIILW-GPAGTGKTSIARLYAQAFNIP 66 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-----DVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F+S S + + DL ++ E+R +LF+DEIHR + ++ P +E + + Sbjct: 67 FQSLSA-IFSGVADLKKVVKEAEERPLFKGTLLFVDEIHRFNKAQQDAFLPFLEKGSI-V 124 Query: 137 MVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 ++G E PS LSR TRV L NPL D Sbjct: 125 LIGATVENPSFYLNDALLSR-------TRV-LKLNPLDD 155 >gi|238753492|ref|ZP_04614855.1| Replication-associated recombination protein A [Yersinia ruckeri ATCC 29473] gi|238708445|gb|EEQ00800.1| Replication-associated recombination protein A [Yersinia ruckeri ATCC 29473] Length = 447 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL E+ GQ + K A +A L ++ GPPG GKTTLA+++ R + Sbjct: 20 MRPLTLAEYIGQQHLLAPGKPLPRAIEA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 138 IGATTENPSFELNSALLSRARVYLLKALT 166 >gi|150866032|ref|XP_001385499.2| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein 1) DNA-directed DNA polymerase ATPase [Scheffersomyces stipitis CBS 6054] gi|149387288|gb|ABN67470.2| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein 1) DNA-directed DNA polymerase ATPase [Scheffersomyces stipitis CBS 6054] Length = 747 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L++F GQ + L+ I A+ + + G PG+GKT+LA+++A Sbjct: 184 LRPKSLDDFFGQEKLLGQDGILRNII-----NADNIPSFILWGVPGVGKTSLARIIAHTT 238 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F SG + A L + E+ + +LF+DEIHR + V+++L P +E Sbjct: 239 NCKFVELSG-AESNAKRLKEVFLQAENEKHLTGRKTILFLDEIHRFNKAVQDLLLPVIE 296 >gi|227524305|ref|ZP_03954354.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii ATCC 8290] gi|227088536|gb|EEI23848.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii ATCC 8290] Length = 424 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +EE GQ + K+ KA+ L ++ GPPG GKT++A +A Sbjct: 9 MRPTKIEEIVGQQDLVGPGKIISRMVKAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + VL +DEIHRL ++ L P +E + +++G Sbjct: 67 FRVLNAATDTKKDLQVVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPLLEKGAI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYININ 135 >gi|254508488|ref|ZP_05120607.1| ATPase, AAA family [Vibrio parahaemolyticus 16] gi|219548600|gb|EED25606.1| ATPase, AAA family [Vibrio parahaemolyticus 16] Length = 428 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+++ GQ A L+ +EA + ++ GPPG GKTTLA+V A Sbjct: 1 MRPETLDQYIGQQHILGAGKPLRRALEAGH-----IHSMILWGPPGTGKTTLAEVAANYA 55 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 S V + ++ A + + R +LF+DE+HR + ++ P +ED Sbjct: 56 NAEVERVSA-VTSGVKEIRAAIERARENKLAGRRTILFVDEVHRFNKSQQDAFLPHIEDG 114 Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 + + E PS LSR RV LT+ Q G+ ++ Sbjct: 115 TVTFIGATTENPSFELNNALLSR-------ARVYKLTSLSQQDIGLALQ 156 >gi|326480926|gb|EGE04936.1| AAA family ATPase [Trichophyton equinum CBS 127.97] Length = 551 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 21/167 (12%) Query: 9 SRNVSQEDADIS-LLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGL 65 S N Q+ A ++ +RPRTL+E GQ N L+ IE + + ++ G G Sbjct: 132 SSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIERDR-----VPSMILWGSAGT 186 Query: 66 GKTTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLS 118 GKTTLA+V+A +G F STS V A+ L A N + ++F DEIHR S Sbjct: 187 GKTTLARVIASMVGSRFVEINSTSSGV-AECKKLFAEAKNELSLTGRKTIIFCDEIHRFS 245 Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAAT 160 +++ +E Q+ L+ E PS + LSR FTL T Sbjct: 246 KSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 292 >gi|167645615|ref|YP_001683278.1| recombination factor protein RarA [Caulobacter sp. K31] gi|167348045|gb|ABZ70780.1| AAA ATPase central domain protein [Caulobacter sp. K31] Length = 433 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 9/116 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+E GQ A AR L ++ GPPG GKTT+A+++A+ G Sbjct: 22 LRPQTLDEVVGQEHLLGPEGPIGRMAAARR--LASMILWGPPGTGKTTIARLLAKAGGYE 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131 F+ S V + DL R +LF+DEIHR + ++ P +E+ Sbjct: 80 FQQISA-VFSGVADLKKAFEQARMRRQAGQSTLLFVDEIHRFNRAQQDGFLPFVEE 134 >gi|52141108|ref|YP_085721.1| recombination factor protein RarA [Bacillus cereus E33L] gi|51974577|gb|AAU16127.1| ATPase, AAA family [Bacillus cereus E33L] Length = 428 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 102/263 (38%), Gaps = 47/263 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDL 265 IA+ L + + DK G D+ Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV 243 >gi|254252991|ref|ZP_04946309.1| hypothetical protein BDAG_02239 [Burkholderia dolosa AUO158] gi|124895600|gb|EAY69480.1| hypothetical protein BDAG_02239 [Burkholderia dolosa AUO158] Length = 436 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 42/259 (16%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ L++ E+ K + ++ GPPG+GKTTL+++ A Sbjct: 17 LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLSRLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ + +D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIRDAMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 L +G S ++N + + + +V +L + D +++ + Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLTDD--------------EMRQL 171 Query: 192 VQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 ++R L GLA D A + + G R LL + + A A TI E A Sbjct: 172 LKRAQDIALDGLAFDDNAVDTLIGYADGDARRFLNLLEQAQTAAASAGVATIDAEFVSNA 231 Query: 250 LLRLA--IDKMG---FDQL 263 + A DK G +DQ+ Sbjct: 232 MTLNARRFDKGGDNFYDQI 250 >gi|284032278|ref|YP_003382209.1| AAA ATPase central domain-containing protein [Kribbella flavida DSM 17836] gi|283811571|gb|ADB33410.1| AAA ATPase central domain protein [Kribbella flavida DSM 17836] Length = 488 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 18/129 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ + S L+ +E + + +L GPPG GKTT+A VV+ + Sbjct: 35 MRPRSLDELVGQQHLLAPGSPLRRLVEGDQPMS-----LLLWGPPGTGKTTIAAVVSHQT 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED---------RDVLFIDEIHRLSIIVEEILYPAM 129 F S V A D+ ++ VLFIDE+HR + ++ L P + Sbjct: 90 NRKFVELSA-VTAGVKDVRQVIDAARRELSRPGGSVETVLFIDEVHRFTKAQQDALLPGV 148 Query: 130 EDFQLDLMV 138 E+ + L+ Sbjct: 149 ENRWVTLVA 157 >gi|227510161|ref|ZP_03940210.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190366|gb|EEI70433.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 424 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +EE GQ + K+ KA+ L ++ GPPG GKT++A +A Sbjct: 9 MRPTKIEEIVGQQDLVGPGKIISRMVKAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K + A + VL +DEIHRL ++ L P +E + +++G Sbjct: 67 FRVLNAATDTKKDLQVVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPLLEKGAI-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYININ 135 >gi|308189678|ref|YP_003922609.1| ATPase [Mycoplasma fermentans JER] gi|319776862|ref|YP_004136513.1| atpase, aaa family [Mycoplasma fermentans M64] gi|307624420|gb|ADN68725.1| ATPase [Mycoplasma fermentans JER] gi|318037937|gb|ADV34136.1| ATPase, AAA family [Mycoplasma fermentans M64] Length = 404 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 9/109 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL++ GQ S LK E K +A +F G G GK++ A +A +L + Sbjct: 8 IRPRTLDDIVGQKHVVSLLK---EIVKNKAST--SFIFFGESGTGKSSAAVALANDLKLK 62 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + G A + L+ ++ D++ IDEIHRL+ ++IL +E Sbjct: 63 Y----GYFNATINNKDELVNTIQTNDIIIIDEIHRLNKDKQDILLSYLE 107 >gi|251781644|ref|YP_002995946.1| recombination factor protein RarA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390273|dbj|BAH80732.1| recombination factor protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126434|gb|ADX23731.1| recombination factor protein RarA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 429 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQEHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|38233937|ref|NP_939704.1| recombination factor protein RarA [Corynebacterium diphtheriae NCTC 13129] gi|38200198|emb|CAE49879.1| Conserved hypothetical protein (putative ATP/GTP binding protein) [Corynebacterium diphtheriae] Length = 456 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 21/186 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++L+E GQ + K +A V+ GPPG GKTT+A +++ G Sbjct: 40 MRPQSLDEVVGQRHLLDSGKPLQRLIAGSGDA--SVILYGPPGTGKTTIASLISAGTGHE 97 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F S I + D A R VLFIDE+HR S ++ L A+E+ + L Sbjct: 98 FVGLSALNSGVKEIREVIDQARRNLIHGKRTVLFIDEVHRFSKTQQDALLAAVENRTVLL 157 Query: 137 MVG--EGPS--------ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 + E PS +RS+ + L T T +L + LQD+ G+ R+ + E Sbjct: 158 VAATTENPSFSVVAPLLSRSLILQLKPLTHDDIKT---VLLHALQDKRGLDNRITISD-E 213 Query: 187 DLKTIV 192 L+ +V Sbjct: 214 ALEQLV 219 >gi|55821924|ref|YP_140366.1| recombination factor protein RarA [Streptococcus thermophilus LMG 18311] gi|55823843|ref|YP_142284.1| recombination factor protein RarA [Streptococcus thermophilus CNRZ1066] gi|116628622|ref|YP_821241.1| recombination factor protein RarA [Streptococcus thermophilus LMD-9] gi|55737909|gb|AAV61551.1| chromosome segregation helicase [Streptococcus thermophilus LMG 18311] gi|55739828|gb|AAV63469.1| chromosome segregation helicase [Streptococcus thermophilus CNRZ1066] gi|116101899|gb|ABJ67045.1| Recombination protein MgsA [Streptococcus thermophilus LMD-9] gi|312279275|gb|ADQ63932.1| ATPase AAA family recombination factor RarA [Streptococcus thermophilus ND03] Length = 422 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR++ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPRSISEVIGQKHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKAKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|326473927|gb|EGD97936.1| AAA family ATPase [Trichophyton tonsurans CBS 112818] Length = 551 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 21/167 (12%) Query: 9 SRNVSQEDADIS-LLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGL 65 S N Q+ A ++ +RPRTL+E GQ N L+ IE + + ++ G G Sbjct: 132 SSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIERDR-----VPSMILWGSAGT 186 Query: 66 GKTTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLS 118 GKTTLA+V+A +G F STS V A+ L A N + ++F DEIHR S Sbjct: 187 GKTTLARVIASMVGSRFVEINSTSSGV-AECKKLFAEAKNELSLTGRKTIIFCDEIHRFS 245 Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAAT 160 +++ +E Q+ L+ E PS + LSR FTL T Sbjct: 246 KSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 292 >gi|238920372|ref|YP_002933887.1| recombination factor protein RarA [Edwardsiella ictaluri 93-146] gi|238869941|gb|ACR69652.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 447 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR----E 77 +RP TLE++ GQ + K A A L ++ GPPG GKTTLA+++AR E Sbjct: 20 MRPATLEQYIGQRHLLAAGKPLPRAILA--GHLHSMILWGPPGTGKTTLAELIARYGHAE 77 Query: 78 LGVNFRSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 + TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGIKEIREAIERARHNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|145258000|ref|XP_001401914.1| AAA family ATPase [Aspergillus niger CBS 513.88] gi|134074518|emb|CAK38812.1| unnamed protein product [Aspergillus niger] Length = 531 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 42/192 (21%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPRTL++ GQ N L+ IE + + ++ G PG GKTT+A+V+A +G Sbjct: 126 MRPRTLDDVCGQELVGPNGVLRGLIEQDR-----VPSMILWGGPGTGKTTIARVIASMVG 180 Query: 80 VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F ++SG K D + L + ++F DEIHR S +++ +E Q Sbjct: 181 SRFVEINSTSSGVAECKKIFSDAKSELGLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 240 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + L+ E PS + LSR FTL T ED+ Sbjct: 241 VTLIGATTENPSFKVQNALLSRCRTFTLSKLTD------------------------EDI 276 Query: 189 KTIVQRGAKLTG 200 K+I+ R +L G Sbjct: 277 KSILHRALRLEG 288 >gi|24380393|ref|NP_722348.1| recombination factor protein RarA [Streptococcus mutans UA159] gi|24378415|gb|AAN59654.1|AE015027_12 putative ATPase [Streptococcus mutans UA159] Length = 427 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR + E GQ K+ + A L ++ GPPG+GKT++A +A Sbjct: 15 MRPRDISEVIGQKHLVGQGKII--SRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFA 72 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + IA+ + L VL +DEIHRL ++ L P +E+ Q Sbjct: 73 FRTFNATTDTKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKTKQDFLLPLLENGQ 125 Query: 134 LDLMVG 139 + +M+G Sbjct: 126 I-IMIG 130 >gi|120610553|ref|YP_970231.1| recombination factor protein RarA [Acidovorax citrulli AAC00-1] gi|120589017|gb|ABM32457.1| Recombination protein MgsA [Acidovorax citrulli AAC00-1] Length = 462 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L+E GQ L++ ++ K + ++F GPPG+GKTTLA++ A Sbjct: 45 LRPASLDEVIGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTATAF 99 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V + D+ A + + +LF+DEIHR + ++ L P E Sbjct: 100 QCEFIALSA-VFSGVKDIRAAMEQAQQNLAMGKHTILFVDEIHRFNKSQQDALLPYAE 156 >gi|302658374|ref|XP_003020891.1| hypothetical protein TRV_04967 [Trichophyton verrucosum HKI 0517] gi|291184761|gb|EFE40273.1| hypothetical protein TRV_04967 [Trichophyton verrucosum HKI 0517] Length = 551 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 21/167 (12%) Query: 9 SRNVSQEDADIS-LLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGL 65 S N Q+ A ++ +RPRTL+E GQ N L+ IE + + ++ G G Sbjct: 132 SSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIERDR-----VPSMILWGSAGT 186 Query: 66 GKTTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLS 118 GKTTLA+V+A +G F STS V A+ L A N + ++F DEIHR S Sbjct: 187 GKTTLARVIASMVGSRFVEINSTSSGV-AECKKLFAEAKNELSLTGRKTIIFCDEIHRFS 245 Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAAT 160 +++ +E Q+ L+ E PS + LSR FTL T Sbjct: 246 KSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 292 >gi|254584580|ref|XP_002497858.1| ZYRO0F15136p [Zygosaccharomyces rouxii] gi|238940751|emb|CAR28925.1| ZYRO0F15136p [Zygosaccharomyces rouxii] Length = 566 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 23/140 (16%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +RPR + E+ GQ S L +I R + ++ GPPG+GKTTLA+++ + Sbjct: 133 VRPREMTEYVGQQHILSQEGGTLSKYI-----RQGIIPSMVLWGPPGVGKTTLARLLTKT 187 Query: 78 LGVN--FRST---SGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEIL 125 V+ F+ T + A +L ++ ++ R VLFIDEIHR + +++L Sbjct: 188 ASVHGKFQYTMIETSATKANTQELRSIFDKSKNDFHLTKRRTVLFIDEIHRFNKGQQDLL 247 Query: 126 YPAMEDFQLDLM--VGEGPS 143 P +E+ + L+ E PS Sbjct: 248 LPHVENGDIVLIGATTENPS 267 >gi|187250562|ref|YP_001875044.1| ATPase family protein [Elusimicrobium minutum Pei191] gi|186970722|gb|ACC97707.1| ATPase family protein [Elusimicrobium minutum Pei191] Length = 416 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 116/269 (43%), Gaps = 59/269 (21%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77 + P+ L++F GQ L+ IE+ + + +F GPPG+GKT LA+ +A + Sbjct: 14 MAPKNLDDFAGQKHVIGPGRMLRRMIES-----DTIKSAVFFGPPGVGKTALARFIASKT 68 Query: 78 --LGVNFRSTSGPVIAKAGDLAALL---------TNLEDRDVLFIDEIHRLSIIVEEILY 126 + V + + V GD+ ++ T LE R ++ +DEIH + +++L Sbjct: 69 EAVTVELNAAAAGV----GDIKKVIEEAKERRNDTFLEKRTLVVLDEIHHFNKTQQDVLL 124 Query: 127 PAME--DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 P++E D L + E P LSRF++ PL + Sbjct: 125 PSVERGDIILIGLTTENPYFYINNALLSRFSVFE--------FKPL-------------D 163 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK----- 239 +DL+ I++R K+ + +A ++ G R RLL V D A + AK Sbjct: 164 AKDLEQILKRVLKIKEAKIQKDAKDFFITQANGDAR---RLLNAV-DLAILTTAKDSDGI 219 Query: 240 -TITREIADAALLR--LAIDKMGFDQLDL 265 IT ++A + + L DK G + D+ Sbjct: 220 VNITMDVAKECMQKRHLNYDKKGDEHYDV 248 >gi|290581325|ref|YP_003485717.1| putative ATPase [Streptococcus mutans NN2025] gi|254998224|dbj|BAH88825.1| putative ATPase [Streptococcus mutans NN2025] Length = 421 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR + E GQ K+ + A L ++ GPPG+GKT++A +A Sbjct: 9 MRPRDISEVIGQKHLVGQGKII--SRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + IA+ + L VL +DEIHRL ++ L P +E+ Q Sbjct: 67 FRTFNATTDTKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKTKQDFLLPLLENGQ 119 Query: 134 LDLMVG 139 + +M+G Sbjct: 120 I-IMIG 124 >gi|167385811|ref|XP_001737497.1| ATPase WRNIP1 [Entamoeba dispar SAW760] gi|165899652|gb|EDR26196.1| ATPase WRNIP1, putative [Entamoeba dispar SAW760] Length = 482 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 16/162 (9%) Query: 10 RNVSQEDADISLL------RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 R S D DIS + RP+ LE+ GQ A F + ++L + GPP Sbjct: 17 RRDSNSDKDISYIPLAERQRPKRLEDIIGQESAIGIGTPF--NSMILNDSLQSTILFGPP 74 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-----DLAALLTNLEDRD-VLFIDEIHRL 117 G GKTT+A+++ F S +K + A E +D +LF+DEIH L Sbjct: 75 GSGKTTIARIIKNMSNSFFVQISSVTTSKEELKNVIEQAKERKKREKKDTILFVDEIHTL 134 Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 + + ++I PA+E+ + L+ E PS + +SR L+ Sbjct: 135 NKLQQDIFLPAIENGSIILIGATTENPSFQLNNALMSRCNLV 176 >gi|157693158|ref|YP_001487620.1| recombination factor protein RarA [Bacillus pumilus SAFR-032] gi|157681916|gb|ABV63060.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus SAFR-032] Length = 421 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 5/112 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+ GQ ++ +A+ L ++ GPPG+GKT++A +A + Sbjct: 8 MRPSHIEDIIGQEHLVGEGQIIRRMVEAKH--LSSMILYGPPGIGKTSIATAIAGSTSIA 65 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 FR+ + VI D+ A+ + + +L +DE+HRL ++ L P +E+ Sbjct: 66 FRTLNA-VIHNKKDMEAVAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116 >gi|150015980|ref|YP_001308234.1| recombination factor protein RarA [Clostridium beijerinckii NCIMB 8052] gi|149902445|gb|ABR33278.1| AAA ATPase, central domain protein [Clostridium beijerinckii NCIMB 8052] Length = 414 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 98/248 (39%), Gaps = 53/248 (21%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP LE+F GQ K + + + +F GPPG GKTTLA ++A + Sbjct: 7 LMRPNKLEDFVGQQHILGQGKPLYNLIAGKN--ICNCIFYGPPGTGKTTLANIMANYVDK 64 Query: 81 NFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + V A D+ + N++ + VL+IDE+ + ++ L +ED Sbjct: 65 KFYKLNATV-ASVKDIQDITNNIDSLLNYNGVVLYIDELQHFNKKQQQALLEFIED---- 119 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194 R TLIA+TT NP I R N + + L T Sbjct: 120 ----------------GRITLIASTTE-----NPYFVIHKAIISRCNIFSFKPLTT---- 154 Query: 195 GAKLTGLA--------------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 G + GL +DEA I S+G R A +L + ++V + Sbjct: 155 GDIIVGLKRSIQKLIDEGIEIEYSDEALEYIGEISQGDYRKAYNILELAVN-SQVKQVRV 213 Query: 241 ITREIADA 248 I+ E ++ Sbjct: 214 ISSEYIES 221 >gi|332522252|ref|ZP_08398504.1| recombination factor protein RarA [Streptococcus porcinus str. Jelinkova 176] gi|332313516|gb|EGJ26501.1| recombination factor protein RarA [Streptococcus porcinus str. Jelinkova 176] Length = 420 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQEHLVGEGKIIRRMVEANM--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + K D A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATTDTKKRLQEIADEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|270261177|ref|ZP_06189450.1| hypothetical protein SOD_a04020 [Serratia odorifera 4Rx13] gi|270044661|gb|EFA17752.1| hypothetical protein SOD_a04020 [Serratia odorifera 4Rx13] Length = 444 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 17/152 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL ++ GQ + A L IEA + L ++ GPPG GKTTLA+++ R Sbjct: 17 MRPTTLAQYIGQQHLLAAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGRYG 71 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A + R +LF+DE+HR + ++ P +ED Sbjct: 72 QADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 131 Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATT 161 + + E PS S ++ +R L+ A T Sbjct: 132 ITFIGATTENPSFELNSALLSRARVYLLKALT 163 >gi|297529269|ref|YP_003670544.1| ATPase AAA [Geobacillus sp. C56-T3] gi|297252521|gb|ADI25967.1| AAA ATPase central domain protein [Geobacillus sp. C56-T3] Length = 431 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 13/115 (11%) Query: 22 LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79 +RPRT++E GQ + ++ K +L L G PG GKT+LA +AR G Sbjct: 12 MRPRTIDEIVGQQHIIGPSTPLYKMVKKGHVPSL---LLYGEPGTGKTSLAYAIARTAGR 68 Query: 80 ----VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 +N + I +A + A N+ +LFIDEIHRL+ +++L P +E Sbjct: 69 EWVAINATTAGKKEIEEAVEAARWSGNV----LLFIDEIHRLNKAQQDVLLPHLE 119 >gi|256419214|ref|YP_003119867.1| ATPase AAA [Chitinophaga pinensis DSM 2588] gi|256034122|gb|ACU57666.1| AAA ATPase central domain protein [Chitinophaga pinensis DSM 2588] Length = 419 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 7/136 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+E GQ E + + A + +L+ GPPG+GKTT+A ++A L V Sbjct: 8 IRPETLDELVGQ-EHLTGKDSILRTALQQGRIPSMILW-GPPGVGKTTIANIIAHTLDVP 65 Query: 82 FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137 F + S + A ++ + + + VLFIDEIHR + ++ L A+E + L+ Sbjct: 66 FYTLSA-IAAGVKEVREVIEIARKQGYAVLFIDEIHRFNKSQQDALLGAVEKGIITLIGA 124 Query: 138 VGEGPSARSVKINLSR 153 E PS LSR Sbjct: 125 TTENPSFEVNSALLSR 140 >gi|157369928|ref|YP_001477917.1| recombination factor protein RarA [Serratia proteamaculans 568] gi|157321692|gb|ABV40789.1| AAA ATPase central domain protein [Serratia proteamaculans 568] Length = 447 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 17/152 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL ++ GQ + A L IEA + L ++ GPPG GKTTLA+++ R Sbjct: 20 MRPTTLAQYIGQQHLLAAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGRYG 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A + R +LF+DE+HR + ++ P +ED Sbjct: 75 QADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATT 161 + + E PS S ++ +R L+ A T Sbjct: 135 ITFIGATTENPSFELNSALLSRARVYLLKALT 166 >gi|317491440|ref|ZP_07949876.1| ATPase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920987|gb|EFV42310.1| ATPase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 447 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+++ GQ + K A +A L ++ GPPG GKTTLA+++ R + Sbjct: 20 MRPETLKQYIGQRHLLAVGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAELIGRYGNAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGIKEIREAIERARHNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 138 IGATTENPSFELNSALLSRARVYLLKALT 166 >gi|120554468|ref|YP_958819.1| recombination factor protein RarA [Marinobacter aquaeolei VT8] gi|120324317|gb|ABM18632.1| Recombination protein MgsA [Marinobacter aquaeolei VT8] Length = 444 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 15/154 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +LE + GQ K A + L ++ GPPG+GKTT A+++A ++ Sbjct: 19 MRPTSLEGYVGQAHLVGPGKPLRRAVEQ--GQLHSMILWGPPGVGKTTFARLLANVGDLS 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + S V++ ++ ++ +R +LF+DE+HR + ++ P +ED Sbjct: 77 FETISA-VLSGVKEIREVVERARNRKQSQGRDTLLFVDEVHRFNKSQQDAFLPHIEDGTF 135 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 + VG S ++N + + + TRV +L N Sbjct: 136 -IFVGATTENPSFELN----SALLSRTRVYVLKN 164 >gi|124009494|ref|ZP_01694169.1| ATPase, AAA family [Microscilla marina ATCC 23134] gi|123984840|gb|EAY24808.1| ATPase, AAA family [Microscilla marina ATCC 23134] Length = 429 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 13/177 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL ++ GQ V + +++ + ++ GPPG+GKTTLA+++ + Sbjct: 17 LRPQTLAQYQGQAHLVGKNGVI--SKLLQSDKVPSMILWGPPGVGKTTLARLIGNHVKTP 74 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137 F + S + + ++ ++ + R +LFIDEIHR + ++ L A+E + L+ Sbjct: 75 FFTLSA-INSGVKEVRQVIEKAKTRAGSILFIDEIHRFNKAQQDALLGAVETGLITLIGA 133 Query: 138 VGEGPSARSVKINLSRFTL-----IAATTRVGLLTNPL-QDRFGIPIRLNFYEIEDL 188 E PS + SR + ++ T V +L N QD + + + E E L Sbjct: 134 TTENPSFEVISALQSRCQIYILQPLSPETLVEMLENAQKQDEWLKKLNIKLKETEAL 190 >gi|328794225|ref|XP_001122490.2| PREDICTED: uncharacterized AAA domain-containing protein YrvN-like, partial [Apis mellifera] Length = 318 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 14/117 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ S ++ KA+ L ++ GPPG GKT++A+ ++ G++ Sbjct: 9 MRPKTVNEVVGQQHLLSEGRIINRMIKAKR--LTSMILYGPPGTGKTSIAKALSGTTGLS 66 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + D LT L + ++F+DEIHRL+ ++ L P +ED Sbjct: 67 FEYFNA-----VKDDKKKLTILSQQARVTQSSIIIFLDEIHRLNKDKQDFLLPFIED 118 >gi|239994321|ref|ZP_04714845.1| recombination factor protein RarA [Alteromonas macleodii ATCC 27126] Length = 435 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP T+E+++GQ L+ +EA + ++ GPPG GKTTLA+++A+ Sbjct: 15 MRPVTIEQYSGQEHLLGEGKPLRKMLEAGHCHS-----MILWGPPGTGKTTLAELIAQYT 69 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 + S V + D+ A + E+ R +LF+DE+HR + ++ P +E Sbjct: 70 KASVLRISA-VTSGVKDIRAAMDTAEENARYNQRTLLFVDEVHRFNKSQQDAFLPFVESG 128 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + + E PS K LSR Sbjct: 129 VVTFIGATTENPSFELNKALLSR 151 >gi|260776357|ref|ZP_05885252.1| ATPase AAA family [Vibrio coralliilyticus ATCC BAA-450] gi|260607580|gb|EEX33845.1| ATPase AAA family [Vibrio coralliilyticus ATCC BAA-450] Length = 428 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 1 MRPETLDQYIGQQHILGLGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 58 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 59 VERVSA-VTSGVKDIRAAIDKARENKLTGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 117 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 118 FIGATTENPSFELNNALLSRARVYKLTS 145 >gi|212638447|ref|YP_002314967.1| Lon-like ATP-dependent protease [Anoxybacillus flavithermus WK1] gi|212559927|gb|ACJ32982.1| Lon-like ATP-dependent protease [Anoxybacillus flavithermus WK1] Length = 573 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 63/256 (24%), Positives = 100/256 (39%), Gaps = 55/256 (21%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 R++S + +RP+T ++ GQ + LK + + HV+ GPPG+GKT Sbjct: 72 RSISLTEPLAEKVRPKTFDDIVGQEDGIKALKAALCGPNPQ-----HVIIYGPPGVGKTA 126 Query: 70 LAQVVARELGVN----FR--------------------------STSGPVIAKAGDLA-- 97 A++V E N FR S P+ AG + Sbjct: 127 AARLVLEEAKKNPLSPFRKDAVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 186 Query: 98 -------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED----FQLDLMVGEGPSARS 146 +TN VLFIDEI L I L +ED F+ E P+ + Sbjct: 187 GIPQPKQGAVTNAHG-GVLFIDEIGELHPIQMNKLLKVLEDRKVFFESAYYSEENPNIPN 245 Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 ++ + F L+ ATTR P + + E E++ IV++ A+ Sbjct: 246 HIHDIFQNGLPADFRLVGATTRTPNEIPPAIRSRCMEVFFRELEQEEIAQIVKKAAEKVN 305 Query: 201 LAVTDEAACEIAMRSR 216 L + ++A E+AM +R Sbjct: 306 LPIEEQAVHELAMYAR 321 >gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis 768-20] gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis 768-20] Length = 322 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR+ EE E + LK F++A + H+LF GPPG GKTT+A V+AREL Sbjct: 11 RPRSFEEVVDLEEVKARLKEFVKAGN-----MPHLLFYGPPGTGKTTMALVLAREL 61 >gi|222152405|ref|YP_002561580.1| recombination factor protein RarA [Streptococcus uberis 0140J] gi|222113216|emb|CAR40703.1| putative ATPase [Streptococcus uberis 0140J] Length = 422 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+ E GQ K+ A L ++ GPPG+GKT++A VA Sbjct: 9 MRPRTISEVIGQEHLVGEGKIIRRMVDA--NMLSSMILYGPPGIGKTSIASAVAGTTQYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATTDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|163915553|gb|AAI57421.1| Unknown (protein for MGC:179840) [Xenopus laevis] Length = 339 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 29/155 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP TL + GQ KV E R A + ++ GPPG GKTTLA ++A+ Sbjct: 154 MRPTTLNNYMGQN------KVLGENTMLRNLLQANDIPSIILWGPPGCGKTTLAHIIAKN 207 Query: 78 LG------VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEI 124 V +TS A D+ + ++ + +LF+DEIHR + + ++ Sbjct: 208 AQKSSSRFVTLSATS----ASTSDVREFIKQAQNEQRLFKRKTILFVDEIHRFNKMQQDT 263 Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 P +E + L+ E PS + LSR +I Sbjct: 264 FLPHVECGTITLIGATTENPSFQVNTALLSRCRVI 298 >gi|297565423|ref|YP_003684395.1| AAA ATPase central domain-containing protein [Meiothermus silvanus DSM 9946] gi|296849872|gb|ADH62887.1| AAA ATPase central domain protein [Meiothermus silvanus DSM 9946] Length = 425 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 27/136 (19%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TLEE GQ L+ +E + L ++ GPPG GKTTLA+++A + Sbjct: 14 LRPKTLEEVVGQDHLTGPGKPLRRMLEVGR-----LQSLILWGPPGSGKTTLARLLAEGV 68 Query: 79 GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 G + S +A+A ++ L VLF+DEIHR + ++ L P + Sbjct: 69 GQEMLALSAVNAGVREIKEAVARAREVGGL--------VLFLDEIHRFNKSQQDALLPHV 120 Query: 130 EDFQLDLM--VGEGPS 143 E L L+ E PS Sbjct: 121 ESGLLTLIGATTENPS 136 >gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM 11548] gi|158513488|sp|A3MS28|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548] Length = 326 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 6/65 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPR+ EE E + L+ F++A L H+LF GPPG GKTT+A V+AREL G Sbjct: 11 RPRSFEEVVDLEEVKARLREFVKAGN-----LPHLLFYGPPGTGKTTMALVLARELYGEY 65 Query: 82 FRSTS 86 +R + Sbjct: 66 WRENT 70 >gi|103487637|ref|YP_617198.1| recombination factor protein RarA [Sphingopyxis alaskensis RB2256] gi|98977714|gb|ABF53865.1| Recombination protein MgsA [Sphingopyxis alaskensis RB2256] Length = 439 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L E GQ E + I A + L ++ GPPG GKTT+A+++A + + Sbjct: 28 LRPRSLAEVVGQ-EHLTGTDGAIGRMVAAGQ-LSSIILWGPPGTGKTTIARLLAEAVKMR 85 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130 F + S V + DL + E R +LF+DEIHR + ++ P +E Sbjct: 86 FAALSA-VFSGVADLRQAFADAEKMAATGKRTLLFVDEIHRFNRAQQDGFLPYVE 139 >gi|329889161|ref|ZP_08267504.1| ATPase family associated with various cellular activities AAA family protein [Brevundimonas diminuta ATCC 11568] gi|328844462|gb|EGF94026.1| ATPase family associated with various cellular activities AAA family protein [Brevundimonas diminuta ATCC 11568] Length = 434 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 13/118 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ L++ GQ + ++ IEA + L ++ GPPG GKTT+A+++A+ Sbjct: 21 LRPQALDQVVGQDHLLGEGGPIRRMIEAGR-----LGSMILWGPPGTGKTTIARLLAKAA 75 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 G ++S S + KA + A + + +LF+DEIHR + ++ P +E+ Sbjct: 76 GYEYQSISAVFSGVADLKKAFEAARMRRAAGQQTLLFVDEIHRFNRAQQDGFLPFVEE 133 >gi|238026471|ref|YP_002910702.1| recombination factor protein RarA [Burkholderia glumae BGR1] gi|237875665|gb|ACR27998.1| AAA ATPase, central region [Burkholderia glumae BGR1] Length = 436 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ + L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLAEVIGQTHLLGDGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTAHAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V+ D+ + + +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIAISA-VLGGVKDIRESMEQARETLNRSGRHTILFVDEIHRFNKSQQDALLPFVE 129 >gi|261418417|ref|YP_003252099.1| recombination factor protein RarA [Geobacillus sp. Y412MC61] gi|319767623|ref|YP_004133124.1| ATPase AAA [Geobacillus sp. Y412MC52] gi|261374874|gb|ACX77617.1| AAA ATPase central domain protein [Geobacillus sp. Y412MC61] gi|317112489|gb|ADU94981.1| AAA ATPase central domain protein [Geobacillus sp. Y412MC52] Length = 431 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 13/115 (11%) Query: 22 LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79 +RPRT++E GQ + ++ K +L L G PG GKT+LA +AR G Sbjct: 12 MRPRTIDEIVGQQHIIGPSTPLYKMVKKGHVPSL---LLYGEPGTGKTSLAYAIARTAGR 68 Query: 80 ----VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 +N + I +A + A N+ +LFIDEIHRL+ +++L P +E Sbjct: 69 EWVAINATTAGKKEIEEAVEAARWSGNV----LLFIDEIHRLNKAQQDVLLPHLE 119 >gi|78065552|ref|YP_368321.1| recombination factor protein RarA [Burkholderia sp. 383] gi|77966297|gb|ABB07677.1| Recombination protein MgsA [Burkholderia sp. 383] Length = 436 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V+ D+ + +D +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVE 129 >gi|161898988|ref|YP_201181.2| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae KACC10331] gi|162319801|ref|YP_451430.2| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576725|ref|YP_001913654.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576916|ref|YP_001913845.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521177|gb|ACD59122.1| ATPase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521368|gb|ACD59313.1| ATPase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 458 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL++ GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 29 MRPRTLDDMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S P + + AA R VLF+DE+HR + ++ P +E Sbjct: 84 DAEFNAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 143 Query: 134 LDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 144 I-LFVGATTENPSFELN 159 >gi|84367998|dbj|BAE69156.1| ATPase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 430 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL++ GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 1 MRPRTLDDMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 55 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S P + + AA R VLF+DE+HR + ++ P +E Sbjct: 56 DAEFNAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 115 Query: 134 LDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 116 I-LFVGATTENPSFELN 131 >gi|295425092|ref|ZP_06817797.1| AAA family ATPase [Lactobacillus amylolyticus DSM 11664] gi|295065151|gb|EFG56054.1| AAA family ATPase [Lactobacillus amylolyticus DSM 11664] Length = 438 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 8 MRPQNLDEVVGQQHLIGPGKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR + +A+ G ++ + +L +DEIHRL ++ L P +E Q Sbjct: 66 FRKLNAATDSKKQLQQVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLESGQ 118 Query: 134 LDLM 137 + L+ Sbjct: 119 IILI 122 >gi|225871301|ref|YP_002747248.1| ATPase [Streptococcus equi subsp. equi 4047] gi|225700705|emb|CAW95315.1| putative ATPase [Streptococcus equi subsp. equi 4047] Length = 423 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+ E GQ K+ KA L ++ GPPG+GKT++A +A Sbjct: 9 MRPRTITEVIGQQHLVGEGKIIDRMVKA--NRLASMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + + IA+ + L VL +DEIHRL ++ L P +E Sbjct: 67 FRTFNATIDNKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKSKQDFLLPLLEHGH 119 Query: 134 LDLMVG 139 + +M+G Sbjct: 120 I-IMIG 124 >gi|85712404|ref|ZP_01043454.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Idiomarina baltica OS145] gi|85693847|gb|EAQ31795.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Idiomarina baltica OS145] Length = 451 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 100/230 (43%), Gaps = 45/230 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +R ++L+E+ GQ + K +A A+ R L ++ GPPG GKTTLA+++A Sbjct: 21 MRAQSLDEYVGQTHLLAEGKPLWQAVAQGR---LHSMILWGPPGTGKTTLAELMATSADA 77 Query: 81 NFRS----TSG-PVIAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 TSG I +A D A + R +LF+DE+HR + ++ P +ED + Sbjct: 78 TVSRLSAITSGVKEIRQAIDEAKQRAKQQGRRTLLFVDEVHRFNKSQQDAFLPFIEDGTV 137 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGL-LTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + VG A T G L N L R + RL + EDL+ ++Q Sbjct: 138 -IFVG------------------ATTENPGFELNNALLSRARV-YRLESIKAEDLRALLQ 177 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL-------RRVRDFAEVA 236 R + D A R TP RLL RR+ ++ EVA Sbjct: 178 R-------TLQDPERGLGARHIRLTPEAEDRLLDLAGGDARRMLNYLEVA 220 >gi|94309639|ref|YP_582849.1| recombination factor protein RarA [Cupriavidus metallidurans CH34] gi|93353491|gb|ABF07580.1| recombination protein [Cupriavidus metallidurans CH34] Length = 445 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 121/294 (41%), Gaps = 54/294 (18%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR ++E GQ L+V E+ + + ++ GPPG+GKTTLA+++A Sbjct: 21 LRPRNIDEVIGQQHLLGPGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMANAF 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S V++ D+ + E R ++F+DE+HR + ++ P +E Sbjct: 76 DAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVES- 133 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL--TNPLQDRFGIPIRLNFYEIEDLKT 190 FT I ATT L R + + + E E LK Sbjct: 134 -------------------GLFTFIGATTENPSFEVNGALLSRAAVYVLKSLNEDE-LKQ 173 Query: 191 IVQRGA-KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 +V R + +L G+ DEA I + G R +LL + A A + + D A Sbjct: 174 LVLRASEELGGIRWDDEAMGLIVASADGDGR---KLLNNIEIVARAARNAGV--DAVDTA 228 Query: 250 LLRLAI-------DKMG---FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293 LL A+ DK G +DQ+ + ++ + G + G ++PR Sbjct: 229 LLGSALSENLRRFDKGGDAFYDQISALHKSVRGSDPDGALYWFCRMLDGGADPR 282 >gi|322390784|ref|ZP_08064294.1| AAA family ATPase [Streptococcus parasanguinis ATCC 903] gi|321142454|gb|EFX37922.1| AAA family ATPase [Streptococcus parasanguinis ATCC 903] Length = 434 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 20 MRPRTIDQVIGQQHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 77 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 78 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 132 Query: 137 MVG 139 M+G Sbjct: 133 MIG 135 >gi|262394648|ref|YP_003286502.1| ATPase AAA family [Vibrio sp. Ex25] gi|262338242|gb|ACY52037.1| ATPase AAA family [Vibrio sp. Ex25] Length = 449 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIDKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|67484070|ref|XP_657255.1| AAA family ATPase [Entamoeba histolytica HM-1:IMSS] gi|56474503|gb|EAL51869.1| AAA family ATPase, putative [Entamoeba histolytica HM-1:IMSS] Length = 611 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 13/145 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ LE+ GQ + + F + + + + GPPG GKTT+A ++ F Sbjct: 50 RPKNLEDIIGQEDILAIGTPF--NTMIKNDKIQSTILYGPPGCGKTTIAGIIKNNSKSTF 107 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S S +K D ++ + + R +LF+DEIH L+ + ++ PA+E + + Sbjct: 108 ISMSA-ASSKKEDFKKVINDAKHRKRMGINTILFLDEIHSLNRLQQDTFLPAIESGTI-I 165 Query: 137 MVGEGPSARSVKIN---LSRFTLIA 158 ++G S ++N +SR L+ Sbjct: 166 LIGATTENPSFELNNALMSRCQLVT 190 >gi|225164815|ref|ZP_03727041.1| AAA ATPase central domain protein [Opitutaceae bacterium TAV2] gi|224800567|gb|EEG18937.1| AAA ATPase central domain protein [Opitutaceae bacterium TAV2] Length = 401 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 5/85 (5%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT----NLEDRDVLFID 112 +LF GPPG GKT+ A+ +AR+ G F + V++ +L +L E +LFID Sbjct: 9 LLFYGPPGCGKTSFAEAIARQTGSRFVRLNA-VMSNVAELREILALARRTPESPTLLFID 67 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM 137 E+HR + +++L P +E+ + L+ Sbjct: 68 ELHRFNKSQQDLLLPDVEEGYVRLI 92 >gi|325267281|ref|ZP_08133943.1| replication-associated recombination protein A [Kingella denitrificans ATCC 33394] gi|324981218|gb|EGC16868.1| replication-associated recombination protein A [Kingella denitrificans ATCC 33394] Length = 435 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ L++ GQ L+V +E+ + +L G PG+GKTTLA+++A+ Sbjct: 17 LRPQNLDDVLGQEHLTGEGKPLRVAMESGIPHS-----MLLWGSPGIGKTTLARIIAQGF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130 G F S V + D+ + E R +LF+DE+HR + ++ P +E Sbjct: 72 GAQFLPVSA-VFSGVKDIREAIQKAEAAWQRQQRTILFVDEVHRFNKAQQDAFLPHVE 128 >gi|254225502|ref|ZP_04919112.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125621972|gb|EAZ50296.1| conserved hypothetical protein [Vibrio cholerae V51] Length = 449 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|15641121|ref|NP_230753.1| recombination factor protein RarA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591286|ref|ZP_01678581.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153816923|ref|ZP_01969590.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153823890|ref|ZP_01976557.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227081281|ref|YP_002809832.1| hypothetical protein VCM66_1064 [Vibrio cholerae M66-2] gi|229505296|ref|ZP_04394806.1| ATPase AAA family [Vibrio cholerae BX 330286] gi|229511034|ref|ZP_04400513.1| ATPase AAA family [Vibrio cholerae B33] gi|229518155|ref|ZP_04407599.1| ATPase AAA family [Vibrio cholerae RC9] gi|229608315|ref|YP_002878963.1| recombination factor protein RarA [Vibrio cholerae MJ-1236] gi|254848238|ref|ZP_05237588.1| recombination factor protein RarA [Vibrio cholerae MO10] gi|255745521|ref|ZP_05419469.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101] gi|262158405|ref|ZP_06029521.1| holliday junction DNA helicase RuvB [Vibrio cholerae INDRE 91/1] gi|298498787|ref|ZP_07008594.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655578|gb|AAF94267.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546870|gb|EAX57028.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126512510|gb|EAZ75104.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126518593|gb|EAZ75816.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227009169|gb|ACP05381.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229344870|gb|EEO09844.1| ATPase AAA family [Vibrio cholerae RC9] gi|229350999|gb|EEO15940.1| ATPase AAA family [Vibrio cholerae B33] gi|229357519|gb|EEO22436.1| ATPase AAA family [Vibrio cholerae BX 330286] gi|229370970|gb|ACQ61393.1| ATPase AAA family [Vibrio cholerae MJ-1236] gi|254843943|gb|EET22357.1| recombination factor protein RarA [Vibrio cholerae MO10] gi|255736596|gb|EET91993.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101] gi|262029846|gb|EEY48494.1| holliday junction DNA helicase RuvB [Vibrio cholerae INDRE 91/1] gi|297543120|gb|EFH79170.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 449 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|296877179|ref|ZP_06901219.1| AAA family ATPase [Streptococcus parasanguinis ATCC 15912] gi|296431699|gb|EFH17506.1| AAA family ATPase [Streptococcus parasanguinis ATCC 15912] Length = 434 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 20 MRPRTIDQVIGQQHLVGEGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 77 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 78 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 132 Query: 137 MVG 139 M+G Sbjct: 133 MIG 135 >gi|147902451|ref|NP_001089187.1| Werner helicase interacting protein 1 [Xenopus laevis] gi|63147358|dbj|BAD98297.1| Werner helicase interacting protein 1 [Xenopus laevis] Length = 572 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 29/155 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP TL + GQ KV E R A + ++ GPPG GKTTLA ++A+ Sbjct: 154 MRPTTLNNYMGQN------KVLGENTMLRNLLQANDIPSIILWGPPGCGKTTLAHIIAKN 207 Query: 78 LG------VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEI 124 V +TS A D+ + ++ + +LF+DEIHR + + ++ Sbjct: 208 AQKSSSRFVTLSATS----ASTSDVREFIKQAQNEQRLFKRKTILFVDEIHRFNKMQQDT 263 Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 P +E + L+ E PS + LSR +I Sbjct: 264 FLPHVECGTITLIGATTENPSFQVNTALLSRCRVI 298 >gi|312139551|ref|YP_004006887.1| ATPase AAA [Rhodococcus equi 103S] gi|311888890|emb|CBH48203.1| putative AAA ATPase [Rhodococcus equi 103S] Length = 468 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 23/146 (15%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L E GQ + + L+ +E + A + VL GPPG GKTTLA +++ Sbjct: 49 MRPAALSEVVGQQHLLAPGAPLRRLVEGSGASS-----VLLYGPPGTGKTTLASLISGAT 103 Query: 79 GVNFRSTSGPVIAKAG--------DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 G F + S AG +LA ++ VLFIDE+HR S ++ L A+E Sbjct: 104 GRKFEALSA---LSAGVKEVRGVIELARRRLLQGEQTVLFIDEVHRFSKTQQDALLAAVE 160 Query: 131 DFQLDLMVG---EGPSARSVKINLSR 153 + ++ L+V E PS V LSR Sbjct: 161 N-RIVLLVAATTENPSFSVVSPLLSR 185 >gi|58426759|gb|AAW75796.1| ATPase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 517 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL++ GQ + S L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 88 MRPRTLDDMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 142 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S P + + AA R VLF+DE+HR + ++ P +E Sbjct: 143 DAEFNAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 202 Query: 134 LDLMVGEGPSARSVKIN 150 + L VG S ++N Sbjct: 203 I-LFVGATTENPSFELN 218 >gi|312868089|ref|ZP_07728293.1| recombination factor protein RarA [Streptococcus parasanguinis F0405] gi|311096493|gb|EFQ54733.1| recombination factor protein RarA [Streptococcus parasanguinis F0405] Length = 423 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPRTIDQVIGQQHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|301321559|gb|ADK68949.1| helicase subunit of the Holliday junction resolvase-like ATPase [Gordonia sp. KTR9] Length = 429 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 21/163 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL++ GQ S L+ I + A VL PP GKT+ A+++A Sbjct: 1 MRPKTLDDLVGQDHLTTPGSPLQQLISGSIAAPS----VLLWAPPATGKTSTARIIAENT 56 Query: 79 GVNF---RSTSGPV----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F +TS V A A L + VLFIDEIHR S ++IL PA+E Sbjct: 57 ESRFVELSATSAGVKEVRSAVTEAQAGLAADPPVSTVLFIDEIHRFSKAQQDILLPAVES 116 Query: 132 FQLDLM--VGEGPS-----ARSVKINLSRFTLIAATTRVGLLT 167 + L+ E PS A + L R ++ T+ V +LT Sbjct: 117 GTVSLIGATTENPSFSVNPALRSRAILLRLKPLSQTSIVSILT 159 >gi|241894974|ref|ZP_04782270.1| crossover junction endodeoxyribonuclease [Weissella paramesenteroides ATCC 33313] gi|241871692|gb|EER75443.1| crossover junction endodeoxyribonuclease [Weissella paramesenteroides ATCC 33313] Length = 429 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR + E GQ + K+ A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPRNISEVVGQQHLVGDGKIINRMVTAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + K + A + VL +DEIHRL ++ L P +E ++ L+ Sbjct: 67 FRILNAATDTKKDLQIVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPHLESGRIVLI 123 >gi|126737037|ref|ZP_01752772.1| ATPase [Roseobacter sp. SK209-2-6] gi|126721622|gb|EBA18325.1| ATPase [Roseobacter sp. SK209-2-6] Length = 437 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 94/229 (41%), Gaps = 16/229 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR+L+E GQ + V + A L ++ GPPG+GKT++A+ V L Sbjct: 20 LRPRSLDEVVGQKTLTAKGSVLRR--RIAANQLGSIVLYGPPGVGKTSIARAVGEMLNKE 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVL-FIDEIHRLSIIVEEILYPAMEDFQLDLM--V 138 F+ A D+ L R +L F+DE+HR S + L E+ D + Sbjct: 78 FKQLHA-TRAGVKDIRQLADEARIRPILIFVDEVHRFSATQADDLLSICEEGTADFIGAT 136 Query: 139 GEGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTI 191 + P K +SR T+ IA +L L+ GI + L E L+ I Sbjct: 137 TQNPYTALPKALVSRSTILKLEPIAIEDMEAVLARGLEHLAEMGIEVVL---APEQLRII 193 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 R A+T + I G+ ++ +L V A V H ++ Sbjct: 194 AGRSGGDARSALTTLESLAIGHGDSGSVKVTDDMLEEVYRAAPVNHDRS 242 >gi|153213560|ref|ZP_01948850.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153824929|ref|ZP_01977596.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153828124|ref|ZP_01980791.1| ATPase, AAA family [Vibrio cholerae 623-39] gi|229520459|ref|ZP_04409884.1| ATPase AAA family [Vibrio cholerae TM 11079-80] gi|261210730|ref|ZP_05925022.1| ATPase AAA family [Vibrio sp. RC341] gi|124115896|gb|EAY34716.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|148876366|gb|EDL74501.1| ATPase, AAA family [Vibrio cholerae 623-39] gi|149741441|gb|EDM55471.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|229342557|gb|EEO07550.1| ATPase AAA family [Vibrio cholerae TM 11079-80] gi|260840215|gb|EEX66795.1| ATPase AAA family [Vibrio sp. RC341] Length = 449 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|121726259|ref|ZP_01679549.1| conserved hypothetical protein [Vibrio cholerae V52] gi|229515491|ref|ZP_04404950.1| ATPase AAA family [Vibrio cholerae TMA 21] gi|229529802|ref|ZP_04419192.1| ATPase AAA family [Vibrio cholerae 12129(1)] gi|121631205|gb|EAX63578.1| conserved hypothetical protein [Vibrio cholerae V52] gi|229333576|gb|EEN99062.1| ATPase AAA family [Vibrio cholerae 12129(1)] gi|229347260|gb|EEO12220.1| ATPase AAA family [Vibrio cholerae TMA 21] gi|327483813|gb|AEA78220.1| ATPase, AAA family [Vibrio cholerae LMA3894-4] Length = 449 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|262402531|ref|ZP_06079092.1| ATPase AAA family [Vibrio sp. RC586] gi|262351313|gb|EEZ00446.1| ATPase AAA family [Vibrio sp. RC586] Length = 449 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|229822983|ref|ZP_04449053.1| hypothetical protein GCWU000282_00275 [Catonella morbi ATCC 51271] gi|229787796|gb|EEP23910.1| hypothetical protein GCWU000282_00275 [Catonella morbi ATCC 51271] Length = 424 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 6/131 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR LE+ GQ K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 9 MRPRQLEDILGQEHLVGPGKIIHRMVQAKR--LTSMILYGPPGIGKTSIASAIAGSTRYA 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR+ + K +L ++ +L +DEIHRL+ ++ L P +E ++ +++G Sbjct: 67 FRTLNAATDGKK-ELEQVVEEAKFSGTLILLLDEIHRLNTTKQDFLLPHLESGRI-ILIG 124 Query: 140 EGPSARSVKIN 150 + IN Sbjct: 125 ATTENPYIAIN 135 >gi|297578710|ref|ZP_06940638.1| ATPase [Vibrio cholerae RC385] gi|297536304|gb|EFH75137.1| ATPase [Vibrio cholerae RC385] Length = 449 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|292493395|ref|YP_003528834.1| ATPase AAA [Nitrosococcus halophilus Nc4] gi|291581990|gb|ADE16447.1| AAA ATPase central domain protein [Nitrosococcus halophilus Nc4] Length = 454 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 49/248 (19%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+ L++F GQ ++ + L+ IE + + ++ GPPG GKTTLA+++A Sbjct: 33 MRPQKLDDFVGQSHLLDKGAPLRQAIETGRPHS-----MVLWGPPGTGKTTLARLIAHYC 87 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F S S V+A ++ A + + VLF+DE+HR + ++ P +E+ Sbjct: 88 QAQFISLSA-VLAGVKEVRAAVDKAQRVRSEEGYGTVLFVDEVHRFNKSQQDAFLPYVEN 146 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLK 189 F I ATT L N L R + + L + D+ Sbjct: 147 --------------------GTFIFIGATTENPSFELNNALLSRCRVYV-LKCLRVGDIC 185 Query: 190 TIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 T++ R G L + + +A + G R A LL D AE KTI Sbjct: 186 TLINRALADPEQGLGRRSLTMAETLCQRLAEAADGDARRALNLLEIASDLAE---KKTIP 242 Query: 243 REIADAAL 250 E+ + L Sbjct: 243 EELLNQVL 250 >gi|258626330|ref|ZP_05721177.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258581382|gb|EEW06284.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 449 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|254291532|ref|ZP_04962323.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|150422596|gb|EDN14552.1| conserved hypothetical protein [Vibrio cholerae AM-19226] Length = 449 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|262165385|ref|ZP_06033122.1| ATPase AAA family [Vibrio mimicus VM223] gi|262025101|gb|EEY43769.1| ATPase AAA family [Vibrio mimicus VM223] Length = 449 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|325672565|ref|ZP_08152261.1| AAA family ATPase [Rhodococcus equi ATCC 33707] gi|325556442|gb|EGD26108.1| AAA family ATPase [Rhodococcus equi ATCC 33707] Length = 468 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 23/146 (15%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L E GQ + + L+ +E + A + VL GPPG GKTTLA +++ Sbjct: 49 MRPAALSEVVGQQHLLAPGAPLRRLVEGSGASS-----VLLYGPPGTGKTTLASLISGAT 103 Query: 79 GVNFRSTSGPVIAKAG--------DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 G F + S AG +LA ++ VLFIDE+HR S ++ L A+E Sbjct: 104 GRKFEALSA---LSAGVKEVRGVIELARRRLLQGEQTVLFIDEVHRFSKTQQDALLAAVE 160 Query: 131 DFQLDLMVG---EGPSARSVKINLSR 153 + ++ L+V E PS V LSR Sbjct: 161 N-RIVLLVAATTENPSFSVVSPLLSR 185 >gi|147673167|ref|YP_001216577.1| recombination factor protein RarA [Vibrio cholerae O395] gi|262170267|ref|ZP_06037954.1| ATPase AAA family [Vibrio cholerae RC27] gi|146315050|gb|ABQ19589.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227012923|gb|ACP09133.1| conserved hypothetical protein [Vibrio cholerae O395] gi|262021282|gb|EEY39996.1| ATPase AAA family [Vibrio cholerae RC27] Length = 449 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|332686848|ref|YP_004456622.1| ATPase [Melissococcus plutonius ATCC 35311] gi|332370857|dbj|BAK21813.1| uncharacterized ATPase (AAA family) associated with cysteine desulfurase [Melissococcus plutonius ATCC 35311] Length = 426 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L + GQ + K+ K + L ++ GPPG GKT++A +A Sbjct: 9 MRPKQLSDVVGQKQLVDKDKIIYRMVKTKM--LTSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + K DL ++ + +L +DE+HRL ++ L P +E ++ +++G Sbjct: 67 FRMLNAATDTKK-DLQIVVDEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI-ILIG 124 Query: 140 EGPSARSVKIN 150 + IN Sbjct: 125 ATTENPYISIN 135 >gi|328473159|gb|EGF44007.1| recombination factor protein RarA [Vibrio parahaemolyticus 10329] Length = 449 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTIEQYIGQQHILGPGKPLRRALEAGH--VHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|256383802|gb|ACU78372.1| recombination factor protein RarA [Mycoplasma mycoides subsp. capri str. GM12] gi|256384632|gb|ACU79201.1| recombination factor protein RarA [Mycoplasma mycoides subsp. capri str. GM12] gi|296455903|gb|ADH22138.1| recombination factor protein RarA [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 411 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 15/117 (12%) Query: 21 LLRPRTLEEFTGQVEACS-----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 LLRP+T ++ GQ E N + + + ++F GP G+GKT+ A +A Sbjct: 8 LLRPKTTKDIIGQTEILKPNGLINKMILNDYCTS-------LIFYGPSGVGKTSFAISLA 60 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAME 130 +L +++ + K L +++ L+DR +L IDEIHRL+ ++IL ME Sbjct: 61 NDLKIDYEIFNASY-DKKEKLTSIIQKALLQDRFILIIDEIHRLNKDKQDILLEYME 116 >gi|75675584|ref|YP_318005.1| recombination factor protein RarA [Nitrobacter winogradskyi Nb-255] gi|74420454|gb|ABA04653.1| Recombination protein MgsA [Nitrobacter winogradskyi Nb-255] Length = 443 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L + GQ + R L ++F GPPG GKTT+A+++A ++ Sbjct: 30 LRPQMLSDVVGQDHILGPDGALTRMLETRT--LGSLIFWGPPGTGKTTVARLLADATALH 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL R +LF+DE+HR + ++ P MED + Sbjct: 88 FEQLSA-VFSGVNDLKKAFEAARARRESGTGTLLFVDEVHRFNRAQQDSFLPVMEDGTV- 145 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 146 VLVGATTENPSFELN 160 >gi|258645316|ref|ZP_05732785.1| ATPase, AAA family [Dialister invisus DSM 15470] gi|260402665|gb|EEW96212.1| ATPase, AAA family [Dialister invisus DSM 15470] Length = 474 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 38/222 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L++ GQ E+ F+ R + + +L GPPG GKTT+A V+A+ Sbjct: 61 MRPEILDDIIGQDESVGK-NSFLYKMIER-DTVPSLLLFGPPGCGKTTIASVIAKMTKFK 118 Query: 82 F---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F +TS + A L+ R ++FIDE+HR + +++L P +E+ Sbjct: 119 FLKLNATSSGAKEIRDIVPAAQKELQYYGRRTIVFIDEVHRFNRAQQDLLLPYVEN---- 174 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 F LI ATT L L R + I L I+ + I+Q Sbjct: 175 ----------------GTFILIGATTENPYFELNGSLLSRIRL-IHLKPLSIDSIVLILQ 217 Query: 194 RGA--KLTGLAVTDEAACEIAMR-----SRGTPRIAGRLLRR 228 + K GL + D A EI ++ + G RIA LL + Sbjct: 218 KALTDKNKGLGMHDYHADEIVLKNIAAYAAGDTRIALNLLEQ 259 >gi|117620641|ref|YP_856398.1| recombination factor protein RarA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562048|gb|ABK38996.1| ATPase, AAA family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 451 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 11/140 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TLE++ GQ K +A A ++ GPPG GKTTLA+++A Sbjct: 25 MRPQTLEQYIGQQHILGPDKPLRKAI--LAGHCHSMILWGPPGTGKTTLAELMAHYCQAE 82 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + ++ R +LF+DE+HR + +++ P +ED + Sbjct: 83 VERLSA-VTSGIKEIRAAIDKAKENSWRGVRTILFVDEVHRFNKSQQDVFLPHIEDGTIT 141 Query: 136 LM--VGEGPSARSVKINLSR 153 + E PS LSR Sbjct: 142 FIGATTENPSFELNNALLSR 161 >gi|262171856|ref|ZP_06039534.1| ATPase AAA family [Vibrio mimicus MB-451] gi|261892932|gb|EEY38918.1| ATPase AAA family [Vibrio mimicus MB-451] Length = 449 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|254439267|ref|ZP_05052761.1| ATPase, AAA family protein [Octadecabacter antarcticus 307] gi|198254713|gb|EDY79027.1| ATPase, AAA family protein [Octadecabacter antarcticus 307] Length = 435 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 25/154 (16%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L + GQ + + L V + + + ++F GPPG+GKTT+A+++A E Sbjct: 23 LRPKSLGDVIGQEQVLGPDAPLGVMLSSGSLSS-----LIFWGPPGVGKTTIARLLADET 77 Query: 79 GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + F S P + K + A + +LF+DEIHR + ++ P MED Sbjct: 78 DLYFIQISAIFTGMPDLRKVFEAAKMRRENGKGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137 Query: 134 LDLMVG---EGPS--------ARSVKINLSRFTL 156 + L+VG E PS +RS + L R TL Sbjct: 138 I-LLVGATTENPSFELNSAVLSRSQVLVLERLTL 170 >gi|148981576|ref|ZP_01816463.1| hypothetical protein VSWAT3_04716 [Vibrionales bacterium SWAT-3] gi|145960819|gb|EDK26153.1| hypothetical protein VSWAT3_04716 [Vibrionales bacterium SWAT-3] Length = 449 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 88/221 (39%), Gaps = 25/221 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPETVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + E PS LSR RV LT+ D IR IED Q Sbjct: 138 FIGATTENPSFELNNALLSR-------ARVYKLTSLNTDDIATVIRQ---AIED----KQ 183 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 RG D +A G R++ L + D AE Sbjct: 184 RGLGDVPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAE 224 >gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM 4304] gi|42559325|sp|O28219|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit; AltName: Full=afRFC small subunit; Short=afRFCsm gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus fulgidus DSM 4304] Length = 319 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RPRTL+E GQ E LK ++E + H+LF GPPG GKT A +AR+L Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKN-----IPHLLFSGPPGTGKTATAIALARDL 62 Query: 79 -GVNFRST 85 G N+R Sbjct: 63 FGENWRDN 70 >gi|21911250|ref|NP_665518.1| recombination factor protein RarA [Streptococcus pyogenes MGAS315] gi|28896626|ref|NP_802976.1| recombination factor protein RarA [Streptococcus pyogenes SSI-1] gi|21905463|gb|AAM80321.1| putative chromosome segregation helicase [Streptococcus pyogenes MGAS315] gi|28811880|dbj|BAC64809.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] Length = 422 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQKHLVGQGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|330719421|ref|ZP_08314021.1| recombination factor protein RarA [Leuconostoc fallax KCTC 3537] Length = 428 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 6/132 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +E GQ K+ +A L ++ GPPG GKT++A +A Sbjct: 10 MRPKKIEHIVGQQHLVGKNKIIWRMVQAHR--LSSMILYGPPGTGKTSIASAIAGSSKYA 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + VL +DEIHRL ++ L P +E + L+ Sbjct: 68 FRVLNAATDSKKDLQIVAEEAKMSGSVVLLLDEIHRLDKTKQDFLLPHLESGNIILI--- 124 Query: 141 GPSARSVKINLS 152 G + + IN++ Sbjct: 125 GATTENPYINVT 136 >gi|91226056|ref|ZP_01260983.1| hypothetical protein V12G01_20316 [Vibrio alginolyticus 12G01] gi|91189497|gb|EAS75774.1| hypothetical protein V12G01_20316 [Vibrio alginolyticus 12G01] Length = 449 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S AA+ E+ R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138 Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165 >gi|258621724|ref|ZP_05716755.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585955|gb|EEW10673.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 449 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|148256359|ref|YP_001240944.1| recombination factor protein RarA [Bradyrhizobium sp. BTAi1] gi|146408532|gb|ABQ37038.1| Recombination protein MgsA [Bradyrhizobium sp. BTAi1] Length = 444 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L + GQ + R L ++F GPPG GKTT+A+++A ++ Sbjct: 31 LRPHKLSDVVGQDHILGPDGALTRMLETRT--LGSLIFWGPPGTGKTTVARLLADATELH 88 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + R +LF+DE+HR + ++ P MED + Sbjct: 89 FEQISA-VFSGVADLKKVFDAARARRETGQGTLLFVDEVHRFNRAQQDSFLPVMEDGTV- 146 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 147 VLVGATTENPSFELN 161 >gi|331703454|ref|YP_004400141.1| ATPase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802009|emb|CBW54163.1| ATPase, AAA family [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 411 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 15/117 (12%) Query: 21 LLRPRTLEEFTGQVEACS-----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 LLRP+T ++ GQ E N + + + ++F GP G+GKT+ A +A Sbjct: 8 LLRPKTTKDIIGQTEILKPNGLINKMILNDYCTS-------LIFYGPSGVGKTSFAISLA 60 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAME 130 +L +++ + K L +++ L+DR +L IDEIHRL+ ++IL ME Sbjct: 61 NDLKIDYEIFNASY-DKKEKLTSIIKKALLQDRFILIIDEIHRLNKDKQDILLEYME 116 >gi|253688108|ref|YP_003017298.1| AAA ATPase central domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754686|gb|ACT12762.1| AAA ATPase central domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 447 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 17/152 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL ++ GQ A L IEA + L ++ GPPG GKTTLA+++ Sbjct: 20 MRPATLAQYIGQQHLLGAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGHYG 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 QADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATT 161 + + E PS S ++ +R L+ A T Sbjct: 135 ITFIGATTENPSFELNSALLSRARVYLLKALT 166 >gi|187778844|ref|ZP_02995317.1| hypothetical protein CLOSPO_02439 [Clostridium sporogenes ATCC 15579] gi|187772469|gb|EDU36271.1| hypothetical protein CLOSPO_02439 [Clostridium sporogenes ATCC 15579] Length = 415 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 8/143 (5%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP LE+F GQ S K K ++ + + +F GPPG GKTTLA ++A + Sbjct: 7 LMRPNKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64 Query: 81 NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + I ++ + + +L + VL+IDE+ + ++ L +ED ++ L Sbjct: 65 KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVVL 124 Query: 137 MVG--EGPSARSVKINLSRFTLI 157 + E P K LSR + Sbjct: 125 IASTTENPYFVIHKAILSRCNIF 147 >gi|270159557|ref|ZP_06188213.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289165647|ref|YP_003455785.1| recombination protein [Legionella longbeachae NSW150] gi|269987896|gb|EEZ94151.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288858820|emb|CBJ12734.1| recombination protein [Legionella longbeachae NSW150] Length = 431 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 15/119 (12%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP+ L E GQ + +LK+ K + ++ GPPG+GKTT+A+V A Sbjct: 15 LLRPKNLNEVIGQGHLLGEGKSLKLCFAGKKPHS-----MILWGPPGVGKTTIARVAAET 69 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 + + S V + D+ A + ++ +LFIDEIHR + ++ L P E Sbjct: 70 FDCEWIALSA-VFSGVKDIRAAIEKAQENLIYGKHTLLFIDEIHRFNKAQQDALLPYTE 127 >gi|260583889|ref|ZP_05851637.1| ATPase, AAA family [Granulicatella elegans ATCC 700633] gi|260158515|gb|EEW93583.1| ATPase, AAA family [Granulicatella elegans ATCC 700633] Length = 424 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 6/131 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LEE GQ + K+ A A+ L ++ GPPG+GKT++A +A Sbjct: 14 MRPTCLEEIVGQQHLVAPGKII--ARMIAAKQLSSMILYGPPGIGKTSIASAIAGTTKYA 71 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR+ + K +L ++ + +L +DEIHRL ++ L P +E+ ++ +++G Sbjct: 72 FRTLNAATDTKK-ELQIVIEEAKMSGTVILLLDEIHRLDKPKQDFLLPHLENGRV-ILIG 129 Query: 140 EGPSARSVKIN 150 + IN Sbjct: 130 ATTENPYIAIN 140 >gi|146341536|ref|YP_001206584.1| recombination factor protein RarA [Bradyrhizobium sp. ORS278] gi|146194342|emb|CAL78366.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Bradyrhizobium sp. ORS278] Length = 444 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L + GQ + R L ++F GPPG GKTT+A+++A ++ Sbjct: 31 LRPHKLSDVVGQDHILGPDGALTRMLETRT--LGSLIFWGPPGTGKTTVARLLADATELH 88 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + R +LF+DE+HR + ++ P MED + Sbjct: 89 FEQISA-VFSGVADLKKVFDAARARRETGQGTLLFVDEVHRFNRAQQDSFLPVMEDGTV- 146 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 147 VLVGATTENPSFELN 161 >gi|148910747|gb|ABR18440.1| unknown [Picea sitchensis] Length = 721 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 6/99 (6%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFI 111 ++F GPPG GKTTLA+ +A + F S S + + + A + + R + F+ Sbjct: 244 IVFWGPPGTGKTTLARAIANSVSYRFSSVSAVTSGLKEVREVLEEAKRMKKMGQRTLFFV 303 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 DE+HR + ++ P +ED + + +G S ++N Sbjct: 304 DEVHRFNKAQQDAFLPVVEDGSI-VFIGATTENPSFEVN 341 >gi|171463748|ref|YP_001797861.1| recombination factor protein RarA [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193286|gb|ACB44247.1| recombination factor protein RarA [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 123 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 12/108 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGV 80 LRP+T+EE GQ +N K A A H ++ GPPG+GKTTLA++ A+ Sbjct: 16 LRPKTIEEVIGQAHLLTNEKPL---NLAFASGKPHSIILWGPPGVGKTTLARLSAKAFDR 72 Query: 81 NFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIV 121 F + S V+A ++ + + +LF+DEIHR + I+ Sbjct: 73 EFIAISA-VLAGVKEIRESIEQAQQNMAQYSKQTILFVDEIHRFNKIL 119 >gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2 gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2 gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2 gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2 Length = 226 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RPRTL+E GQ E LK ++E + H+LF GPPG GKT A +AR+L Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKN-----IPHLLFSGPPGTGKTATAIALARDL 62 Query: 79 -GVNFRST 85 G N+R Sbjct: 63 FGENWRDN 70 >gi|73542280|ref|YP_296800.1| recombination factor protein RarA [Ralstonia eutropha JMP134] gi|72119693|gb|AAZ61956.1| Recombination protein MgsA [Ralstonia eutropha JMP134] Length = 446 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR ++E GQ A L+V E+ + + ++ GPPG+GKTTLA+++A Sbjct: 21 LRPRNIDEVIGQQHLLGAGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMADAF 75 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED-- 131 F + S + I +A D A R ++F+DE+HR + ++ P +E Sbjct: 76 DAEFIALSAVLSGVKDIREAVDRAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGL 135 Query: 132 FQLDLMVGEGPS 143 F E PS Sbjct: 136 FTFIGATTENPS 147 >gi|261821269|ref|YP_003259375.1| recombination factor protein RarA [Pectobacterium wasabiae WPP163] gi|261605282|gb|ACX87768.1| AAA ATPase central domain protein [Pectobacterium wasabiae WPP163] Length = 447 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 17/152 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL ++ GQ A L IEA + L ++ GPPG GKTTLA+++ Sbjct: 20 MRPATLAQYIGQQHLLGAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGHYG 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 QADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATT 161 + + E PS S ++ +R L+ A T Sbjct: 135 ITFIGATTENPSFELNSALLSRARVYLLKALT 166 >gi|300172649|ref|YP_003771814.1| chromosome segregation helicase [Leuconostoc gasicomitatum LMG 18811] gi|299887027|emb|CBL90995.1| Chromosome segregation helicase (Putative) [Leuconostoc gasicomitatum LMG 18811] Length = 428 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +EE GQ + K+ A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPTQIEEIVGQPHLVGSGKIIRRMVDAKR--LSSMILYGPPGTGKTSIASAIAGSSKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + ++ + A + VL +DEIHRL+ I ++ L P +E Sbjct: 67 FRMLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIHRLNKIKQDFLLPHLE 116 >gi|227328170|ref|ZP_03832194.1| recombination factor protein RarA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 447 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 17/152 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL ++ GQ A L IEA + L ++ GPPG GKTTLA+++ Sbjct: 20 MRPATLAQYIGQQHLLGAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGHYG 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 QADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATT 161 + + E PS S ++ +R L+ A T Sbjct: 135 ITFIGATTENPSFELNSALLSRARVYLLKALT 166 >gi|67480321|ref|XP_655510.1| AAA family ATPase [Entamoeba histolytica HM-1:IMSS] gi|56472656|gb|EAL50122.1| AAA family ATPase, putative [Entamoeba histolytica HM-1:IMSS] Length = 482 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 18/157 (11%) Query: 16 DADISLL------RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 D DIS + RP+ LE+ GQ A F + ++L + GPPG GKTT Sbjct: 23 DKDISYIPLAERQRPKRLEDIIGQESAIGIGTPF--NSMILNDSLQSTILFGPPGSGKTT 80 Query: 70 LAQVV---ARELGVNFRS--TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEE 123 +A+++ ++ V S TS + + A E +D +LF+DEIH L+ + ++ Sbjct: 81 IARIIKNTSKSFFVQISSVTTSKEELKNVIEQAKERKKREKKDTILFVDEIHTLNKLQQD 140 Query: 124 ILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLI 157 I PA+E+ + ++VG E PS + +SR L+ Sbjct: 141 IFLPAIENGSI-ILVGATTENPSFQLNNALMSRCNLV 176 >gi|227112002|ref|ZP_03825658.1| recombination factor protein RarA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 447 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 17/152 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL ++ GQ A L IEA + L ++ GPPG GKTTLA+++ Sbjct: 20 MRPATLAQYIGQQHLLGAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGHYG 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 QADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATT 161 + + E PS S ++ +R L+ A T Sbjct: 135 ITFIGATTENPSFELNSALLSRARVYLLKALT 166 >gi|67538894|ref|XP_663221.1| hypothetical protein AN5617.2 [Aspergillus nidulans FGSC A4] gi|40743520|gb|EAA62710.1| hypothetical protein AN5617.2 [Aspergillus nidulans FGSC A4] gi|259484914|tpe|CBF81541.1| TPA: DNA replication ATPase (Eurofung) [Aspergillus nidulans FGSC A4] Length = 528 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPRTL+E GQ V L+ IE + + ++ G PG GKTT+A+V+A +G Sbjct: 121 MRPRTLDEVCGQELVGPTGVLRGLIEEDR-----VPSMILWGGPGTGKTTIARVIASMVG 175 Query: 80 VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +++G K D + L + ++F DEIHR S +++ +E Q Sbjct: 176 SRFVEINSTSTGVAECKKIFADAKSELGLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 235 Query: 134 LDLM--VGEGPSARSVKINLSR---FTL 156 + L+ E PS + LSR FTL Sbjct: 236 VTLIGATTENPSFKVQNALLSRCRTFTL 263 >gi|269960797|ref|ZP_06175168.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834461|gb|EEZ88549.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 449 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S AA+ E+ R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138 Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165 >gi|261367566|ref|ZP_05980449.1| ATPase, AAA family [Subdoligranulum variabile DSM 15176] gi|282570353|gb|EFB75888.1| ATPase, AAA family [Subdoligranulum variabile DSM 15176] Length = 420 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 46/263 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL+E GQ +VF +E+ + + +++F GP G+GKTT+A ++A Sbjct: 8 LRPRTLDEVCGQQHLLGKNQVFRRTVESGR-----IPNMIFYGPSGVGKTTVASIIAAGS 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-----EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 G+ +G A D+ ++L ++ +L++DEI + ++ L +E Sbjct: 63 GMQLHKLNG-TTASTSDIKSVLADIGTLGASGGILLYLDEIQYFNKRQQQSLLECVEQ-- 119 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 TLIA+TT + N L R + ED++ Sbjct: 120 ------------------GTVTLIASTTENPYFYVYNALLSRCTV-FEFKSLTAEDIRKG 160 Query: 192 VQRGAKLTG------LAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTITRE 244 +Q A G + + D+A +A + G R A G L V +T+T + Sbjct: 161 IQNAAARLGAEDKVPILIPDDALDYLAQSAGGDMRKALGNLEFAVTAAPAENGQRTVTLD 220 Query: 245 IADAALLRLAI--DKMGFDQLDL 265 + R A+ DK+G D D+ Sbjct: 221 MVQQVAARTAMRYDKLGDDHYDI 243 >gi|126667375|ref|ZP_01738347.1| hypothetical protein MELB17_13951 [Marinobacter sp. ELB17] gi|126628131|gb|EAZ98756.1| hypothetical protein MELB17_13951 [Marinobacter sp. ELB17] Length = 445 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 118/281 (41%), Gaps = 55/281 (19%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ V L+ +E + L ++ GPPG+GKTT AQ++A Sbjct: 19 MRPAKLADYVGQPHLVGPGKPLRRAVEQGQ-----LHSMILWGPPGVGKTTFAQLLANVS 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 + F + S V++ D+ A + R +LF+DE+HR + ++ P +ED Sbjct: 74 DLAFENVSA-VLSGVKDIRAAVERARARKQGSGQDTLLFVDEVHRFNKSQQDAFLPHIED 132 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + VG S ++N + + + TRV +L N E +D++ + Sbjct: 133 GTF-IFVGATTENPSFELN----SALLSRTRVYVLKN--------------LEDDDIQRL 173 Query: 192 VQRGAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 + R L V ++ +A + G R A +L D AE Sbjct: 174 LIRALSAEEGFGGRLRVAEDVLAMMASAASGDARRALNILEVAADLAE-----------P 222 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287 DA +D + DQL+L T + R GG V + ISA Sbjct: 223 DAD----GVDSVSEDQLELVMQTSLRRFDKGGDVFYDQISA 259 >gi|24213879|ref|NP_711360.1| recombination factor protein RarA [Leptospira interrogans serovar Lai str. 56601] gi|45658352|ref|YP_002438.1| recombination factor protein RarA [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194725|gb|AAN48378.1| recombination factor protein RarA [Leptospira interrogans serovar Lai str. 56601] gi|45601595|gb|AAS71075.1| ATPase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 423 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 13/140 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + EE GQ +A L A ++ GPPG GK+TLA ++ R+ + Sbjct: 17 IRPSSFEEVIGQSKATKQL--------ANYRFPVSIILYGPPGTGKSTLAGILCRKWNLP 68 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137 F + V ++ LL E +LF+DEIHR S ++ L +E L L+ Sbjct: 69 FVEYNA-VSTGVAEIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETGHLILIGA 127 Query: 138 VGEGPSARSVKINLSRFTLI 157 E P+ R + LSR ++ Sbjct: 128 TTENPAFRITRPLLSRCQIL 147 >gi|55981853|ref|YP_145150.1| recombination factor protein RarA [Thermus thermophilus HB8] gi|55773266|dbj|BAD71707.1| probable ATPase [Thermus thermophilus HB8] Length = 421 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 11/121 (9%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR+L+E GQ L+ +EA + L ++ GPPG GKTTLA+++A + Sbjct: 11 LRPRSLDEVLGQPHLTGPQGLLRRMLEAGR-----LSSMVLFGPPGTGKTTLARLLAEGV 65 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 G F S V A ++ + + VLF+DE+HR + ++ L P +E L L Sbjct: 66 GRPFLRLSA-VEAGLKEVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESGLLTL 124 Query: 137 M 137 + Sbjct: 125 I 125 >gi|152997260|ref|YP_001342095.1| recombination factor protein RarA [Marinomonas sp. MWYL1] gi|150838184|gb|ABR72160.1| AAA ATPase central domain protein [Marinomonas sp. MWYL1] Length = 455 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 14/119 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+++ GQ V L+ +E + + GPPG+GKTT AQ+++ L Sbjct: 20 MRPASLDDYIGQSHLVGPGKPLRRMVETGHCHS-----FILWGPPGVGKTTFAQLLSHAL 74 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLE-DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + I A D A L + + VLF+DE+HR + ++ P +ED Sbjct: 75 DAQFIEISAVMSGVKEIRAAVDQAKQLRAMNGTQTVLFVDEVHRFNKSQQDAFLPFIED 133 >gi|46199825|ref|YP_005492.1| recombination factor protein RarA [Thermus thermophilus HB27] gi|46197452|gb|AAS81865.1| ATPase [Thermus thermophilus HB27] Length = 421 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 11/121 (9%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR+L+E GQ L+ +EA + L ++ GPPG GKTTLA+++A + Sbjct: 11 LRPRSLDEVLGQPHLTGPKGLLRRMLEAGR-----LSSMVLFGPPGTGKTTLARLLAEGV 65 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 G F S V A ++ + + VLF+DE+HR + ++ L P +E L L Sbjct: 66 GRPFLRLSA-VEAGLKEVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESGLLTL 124 Query: 137 M 137 + Sbjct: 125 I 125 >gi|307299313|ref|ZP_07579114.1| AAA ATPase central domain protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915109|gb|EFN45495.1| AAA ATPase central domain protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 437 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 30/216 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79 LRP+ ++ GQ E + K I A + +L+ GPPG GKTT+ +++ +LG Sbjct: 15 LRPKEFDDIVGQ-EHLTGKKGIIRGAVDSGKLFSMILY-GPPGTGKTTIGEIIRSKLGND 72 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +F S + A DL + E + VLF+DEIHRL+ +++ P E Sbjct: 73 YHFEFFSASLQGTA-DLKKHFAHGERLKRVGQQLVLFVDEIHRLNKSQQDVFLPVTEK-G 130 Query: 134 LDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 + +++G S ++N LSR L+ + L+D I LN +DL Sbjct: 131 IIILIGATTENPSFEVNPALLSRCRLV--------ILKGLKDS-DISALLNKALEKDLIL 181 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 K +G+ V E IA S G RIA LL Sbjct: 182 ------KESGVTVDGEVIEVIAQSSGGDARIALNLL 211 >gi|162447688|ref|YP_001620820.1| Holliday junction DNA helicase-like ATPase [Acholeplasma laidlawii PG-8A] gi|161985795|gb|ABX81444.1| Holliday junction DNA helicase-like ATPase [Acholeplasma laidlawii PG-8A] Length = 412 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 91/218 (41%), Gaps = 41/218 (18%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-- 77 S +RP+ +E GQ S V + + + + L +L+ GPPG GKTT+A++ + + Sbjct: 6 SRMRPKNFDEVYGQDHLLSKHGVLTKMIEKK-KYLSFILY-GPPGTGKTTIAKLFSDKSM 63 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFI-DEIHRLSIIVEEILYPAMEDFQLDL 136 L F + S AK D+ + DVL I DEIHR+ +++ L P +E Sbjct: 64 LDTYFFNASTDNKAKLKDILDMTAY---HDVLIIVDEIHRMKTDIQDYLLPFLE------ 114 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEIEDLKTIVQRG 195 S +++ I L+ NP Q I R + YEI+ L Sbjct: 115 ------SGKAIMIGLTTL-------------NPYQSINMAIRSRCHLYEIKALSDKDIEA 155 Query: 196 AKLTGLA-------VTDEAACEIAMRSRGTPRIAGRLL 226 A L + +TD+A I S R A LL Sbjct: 156 AILNAIQYLDHDIHLTDDALAAIIRASNSEIRSALNLL 193 >gi|156974088|ref|YP_001444995.1| recombination factor protein RarA [Vibrio harveyi ATCC BAA-1116] gi|156525682|gb|ABU70768.1| hypothetical protein VIBHAR_01799 [Vibrio harveyi ATCC BAA-1116] Length = 451 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 23 MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S AA+ E+ R +LF+DE+HR + ++ P +ED + Sbjct: 81 VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 140 Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 141 IGATTENPSFELNNALLSRARVYKLTS 167 >gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM 11548] gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM 11548] Length = 324 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR+ EE E + L+ F++A L H+LF GPPG GKTT+A V+AREL Sbjct: 11 RPRSFEEVVDLEEVKARLREFVKAGN-----LPHLLFYGPPGTGKTTMALVLAREL 61 >gi|293396838|ref|ZP_06641112.1| replication-associated recombination protein A [Serratia odorifera DSM 4582] gi|291420309|gb|EFE93564.1| replication-associated recombination protein A [Serratia odorifera DSM 4582] Length = 428 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL ++ GQ + K A +A L ++ GPPG GKTTLA+++ R + Sbjct: 1 MRPTTLAQYIGQQHLLAPGKPLPRAIEA--GQLHSMILWGPPGTGKTTLAELIGRYGQAD 58 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 59 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKALT 147 >gi|260102589|ref|ZP_05752826.1| AAA family ATPase [Lactobacillus helveticus DSM 20075] gi|260083616|gb|EEW67736.1| AAA family ATPase [Lactobacillus helveticus DSM 20075] Length = 437 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L++ GQ K+ +AR L ++ GPPG+GKT++A +A Sbjct: 8 MRPQNLDQVVGQQHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + K A + +L +DEIHRL ++ L P +E Q+ L+ Sbjct: 66 FRKLNAATDGKKQLQQVAAEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIILI 122 >gi|119476161|ref|ZP_01616513.1| hypothetical protein GP2143_06210 [marine gamma proteobacterium HTCC2143] gi|119450788|gb|EAW32022.1| hypothetical protein GP2143_06210 [marine gamma proteobacterium HTCC2143] Length = 441 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 28/182 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L ++ GQ + EA + L ++ GPPG+GKT+LA+++A + Sbjct: 20 MRPRILVDYIGQHHLLGEGRPLREAI--LSGQLHSMILWGPPGVGKTSLARLIADLCDAH 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V+A D+ A + + +LFIDE+HR + ++ P +ED + Sbjct: 78 FITLSA-VLAGVKDIRASVEEARQYQANGRQTILFIDEVHRFNKSQQDAFLPFVEDGTV- 135 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 + +G S ++N + + TRV +L E+ED++ I+ R Sbjct: 136 IFIGATTENPSFELN----NALLSRTRV--------------YKLRSLELEDIEKIIDRA 177 Query: 196 AK 197 + Sbjct: 178 CQ 179 >gi|328468694|gb|EGF39679.1| recombination factor protein RarA [Lactobacillus helveticus MTCC 5463] Length = 437 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L++ GQ K+ +AR L ++ GPPG+GKT++A +A Sbjct: 8 MRPQNLDQVVGQQHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + K A + +L +DEIHRL ++ L P +E Q+ L+ Sbjct: 66 FRKLNAATDGKKQLQQVAAEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIILI 122 >gi|161507285|ref|YP_001577239.1| recombination factor protein RarA [Lactobacillus helveticus DPC 4571] gi|160348274|gb|ABX26948.1| Chromosomal segregation helicase [Lactobacillus helveticus DPC 4571] Length = 437 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L++ GQ K+ +AR L ++ GPPG+GKT++A +A Sbjct: 8 MRPQNLDQVVGQQHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + K A + +L +DEIHRL ++ L P +E Q+ L+ Sbjct: 66 FRKLNAATDGKKQLQQVAAEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIILI 122 >gi|163801973|ref|ZP_02195869.1| seryl-tRNA synthetase [Vibrio sp. AND4] gi|159174114|gb|EDP58922.1| seryl-tRNA synthetase [Vibrio sp. AND4] Length = 449 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S AA+ E+ R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138 Query: 137 M--VGEGPS 143 + E PS Sbjct: 139 IGATTENPS 147 >gi|25028305|ref|NP_738359.1| recombination factor protein RarA [Corynebacterium efficiens YS-314] gi|23493589|dbj|BAC18559.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 452 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 21/135 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ + + EA V+ GPPG GKTT+A +++ G Sbjct: 38 MRPRTLDEVVGQQHLLGPGRPLRRLIEGSGEA--SVILYGPPGTGKTTIASLISAATGDR 95 Query: 82 FRSTSG---------PVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAME 130 F + S VI +A T+L R VLFIDE+HR S ++ L A+E Sbjct: 96 FVALSALSSGVKEVREVINRA------RTDLIHGARTVLFIDEVHRFSKTQQDALLAAVE 149 Query: 131 DFQLDLMVG--EGPS 143 + + L+ E PS Sbjct: 150 NRTVLLVAATTENPS 164 >gi|260948804|ref|XP_002618699.1| hypothetical protein CLUG_02158 [Clavispora lusitaniae ATCC 42720] gi|238848571|gb|EEQ38035.1| hypothetical protein CLUG_02158 [Clavispora lusitaniae ATCC 42720] Length = 768 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 10/116 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL++F GQ E + A + +L+ G PG+GKT+LA+++A Sbjct: 228 LRPKTLDDFFGQ-EKLVGPNGILRNIMASQQIPSFILW-GVPGVGKTSLARIIASNSNHR 285 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 + SG + A L +N ++ + +LF+DEIHR + V+++L P +E Sbjct: 286 YVELSGSE-SSAKKLKEAFSNAQNEQQLSGTKTILFLDEIHRFNKAVQDLLLPVIE 340 >gi|320156735|ref|YP_004189114.1| ATPase AAA family [Vibrio vulnificus MO6-24/O] gi|319932047|gb|ADV86911.1| ATPase AAA family [Vibrio vulnificus MO6-24/O] Length = 449 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S AA+ E+ R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138 Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165 >gi|161501800|ref|NP_761751.2| recombination factor protein RarA [Vibrio vulnificus CMCP6] gi|319999484|gb|AAO11278.2| ATPase, AAA family [Vibrio vulnificus CMCP6] Length = 449 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S AA+ E+ R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138 Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165 >gi|297568672|ref|YP_003690016.1| AAA ATPase central domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924587|gb|ADH85397.1| AAA ATPase central domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 461 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L++F GQ ++ K+ A +R L +L GPPG GKTTLA+++A G + Sbjct: 26 MRPARLDDFVGQRHLLADDKLL--AGLSRHGYLPSLLLWGPPGSGKTTLARILAGGSGAD 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S V++ ++ ++ VLF+DEIHR + ++ P +E + Sbjct: 84 FVFFSA-VLSGVKEIREIVERSRRIRAESGRGSVLFVDEIHRFNKSQQDAFLPHVEAGLI 142 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E PS + LSR +I Sbjct: 143 TLIGATTENPSFHVIAPLLSRCRVI 167 >gi|149186572|ref|ZP_01864884.1| ATPase [Erythrobacter sp. SD-21] gi|148829799|gb|EDL48238.1| ATPase [Erythrobacter sp. SD-21] Length = 438 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 16/132 (12%) Query: 9 SRNVSQEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 +++ +EDA ++ LRP +L E GQ A + + A K L ++ GPPG Sbjct: 14 TKDGVREDAPLADRLRPASLGEVIGQDHLTGAEGAIGRMVAAGK-----LSSMILWGPPG 68 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLS 118 GKTT+A+++A +G+ F S S V + DL + R +LF+DEIHR + Sbjct: 69 TGKTTIARLLADSVGMRFESVSA-VFSGVADLKKAFAAADKAAEAGQRTLLFVDEIHRFN 127 Query: 119 IIVEEILYPAME 130 ++ P +E Sbjct: 128 RAQQDGFLPFVE 139 >gi|259507363|ref|ZP_05750263.1| AAA family ATPase [Corynebacterium efficiens YS-314] gi|259165074|gb|EEW49628.1| AAA family ATPase [Corynebacterium efficiens YS-314] Length = 449 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 21/135 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRTL+E GQ + + EA V+ GPPG GKTT+A +++ G Sbjct: 35 MRPRTLDEVVGQQHLLGPGRPLRRLIEGSGEA--SVILYGPPGTGKTTIASLISAATGDR 92 Query: 82 FRSTSG---------PVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAME 130 F + S VI +A T+L R VLFIDE+HR S ++ L A+E Sbjct: 93 FVALSALSSGVKEVREVINRA------RTDLIHGARTVLFIDEVHRFSKTQQDALLAAVE 146 Query: 131 DFQLDLMVG--EGPS 143 + + L+ E PS Sbjct: 147 NRTVLLVAATTENPS 161 >gi|289207843|ref|YP_003459909.1| ATPase AAA [Thioalkalivibrio sp. K90mix] gi|288943474|gb|ADC71173.1| AAA ATPase central domain protein [Thioalkalivibrio sp. K90mix] Length = 454 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L+E GQ V + L+ IE + + ++ GPPG GKTTLA++VA Sbjct: 39 MRPARLDEMVGQDHLVGPDAALRQAIEQGQTPS-----MILWGPPGCGKTTLARLVA-AA 92 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 G T V+A D+ A++ + R +LFIDEIHR + ++ L P +ED Sbjct: 93 GAQRLVTLSAVLAGVKDVRAVVDAAKARRRNGVGTLLFIDEIHRFNKGQQDALLPHIEDG 152 Query: 133 QLDLM--VGEGPS 143 L + E PS Sbjct: 153 TLTFVGATTENPS 165 >gi|311748366|ref|ZP_07722151.1| ATPase, AAA family [Algoriphagus sp. PR1] gi|126576875|gb|EAZ81123.1| ATPase, AAA family [Algoriphagus sp. PR1] Length = 420 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 10/142 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE+ GQ S +A K+ + ++ GPPG+GKTT+A ++A E+ Sbjct: 10 MRPVRLEDLIGQEHLSSPNSFLFKAIKSGN--VPSLILWGPPGVGKTTIANIIANEIKAP 67 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137 F + S + + D+ ++ + VLFIDEIHR + ++ L A+E + L+ Sbjct: 68 FYTLSA-ISSGVKDIREVIEKAKFQMGVVLFIDEIHRFNKSQQDALLGAVEKGIIRLIGA 126 Query: 138 VGEGPSARSVKINLSR---FTL 156 E PS LSR FTL Sbjct: 127 TTENPSFEVNAALLSRCQVFTL 148 >gi|114766058|ref|ZP_01445068.1| AAA ATPase [Pelagibaca bermudensis HTCC2601] gi|114541693|gb|EAU44733.1| AAA ATPase [Roseovarius sp. HTCC2601] Length = 434 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 91/212 (42%), Gaps = 38/212 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP TL++ GQ + + + +A AL ++ GPPG+GKTT+A+ V LG Sbjct: 20 LRPETLDDVIGQPAITAEGSILRR--RIKAGALGSLILYGPPGIGKTTIARAVGTMLGKE 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDV----LFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR P+ A + L ++ + +F+DE+HR S + L E+ D Sbjct: 78 FR----PLHATRDGVKELRKIADEARIRPLLIFVDEVHRFSATQADDLLSICEEGTAD-- 131 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNP--LQDRFGIPIRLNFYEIEDLKTIVQRG 195 + ATT P L R I ++L +ED++ +V+RG Sbjct: 132 ------------------FVGATTGNPYHALPPALVSRSTI-LKLEPMSLEDMEQVVRRG 172 Query: 196 A---KLTGLAV--TDEAACEIAMRSRGTPRIA 222 TGL V T E +A RS G R A Sbjct: 173 IDHLHSTGLDVEMTPEQVRLVAGRSGGDARRA 204 >gi|325105535|ref|YP_004275189.1| AAA ATPase central domain protein [Pedobacter saltans DSM 12145] gi|324974383|gb|ADY53367.1| AAA ATPase central domain protein [Pedobacter saltans DSM 12145] Length = 426 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 22/146 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVAR 76 +RP+ L+E+TGQ K + +A+D ++F GPPG+GKTTL+ ++A+ Sbjct: 11 MRPKNLDEYTGQ-------KHLVGPGAVLRKAIDKGNIPSMIFWGPPGVGKTTLSFIIAQ 63 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAM 129 F S S + + D+ ++ + VLFIDEIHR S ++ L A+ Sbjct: 64 SQDRPFFSLSA-INSGVKDVRDVIDKAKMYKKAGHPIPVLFIDEIHRFSKSQQDSLLGAV 122 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153 E + L+ E PS + LSR Sbjct: 123 ERGYVTLIGATTENPSFEVISALLSR 148 >gi|37679508|ref|NP_934117.1| recombination factor protein RarA [Vibrio vulnificus YJ016] gi|37198252|dbj|BAC94088.1| putative ATPase protein [Vibrio vulnificus YJ016] Length = 449 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S AA+ E+ R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138 Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165 >gi|190347392|gb|EDK39649.2| hypothetical protein PGUG_03747 [Meyerozyma guilliermondii ATCC 6260] Length = 572 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 23/128 (17%) Query: 21 LLRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 L+RP +L ++ GQ ++ + FI R L ++ GPPG+GKTTLA ++A+ Sbjct: 89 LVRPSSLHQYIGQNHLTNHRNGAITNFI-----RLGYLPSMILHGPPGVGKTTLASIIAK 143 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED-------------RDVLFIDEIHRLSIIVEE 123 E G S A + L + D R +FIDEIHR S + ++ Sbjct: 144 EAGYVMVELSA-TDATVSTIRRLSNEIRDENRKRTKLGTPHLRVCVFIDEIHRFSKVQQD 202 Query: 124 ILYPAMED 131 L P +E+ Sbjct: 203 FLLPFVEE 210 >gi|163868623|ref|YP_001609832.1| recombination factor protein RarA [Bartonella tribocorum CIP 105476] gi|161018279|emb|CAK01837.1| ATPase, AAA family [Bartonella tribocorum CIP 105476] Length = 455 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 37/244 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L E GQ + + A ++ ++F GPPG GKTT+A+++A E Sbjct: 40 MRPCSLNEVVGQKHLIGEDGLL--SRMVAAGSIGSLIFWGPPGTGKTTVARLLALETNFA 97 Query: 82 FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + +L + + D+ +LF+DEIHR + ++ P ME+ + Sbjct: 98 FEQVSA-IFTGVSELKKIFEVAQRRFMSGDKTLLFVDEIHRFNRAQQDSFLPVMENGTV- 155 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +++G S ++N A +R +LT D E L +++R Sbjct: 156 VLIGATTENPSFELN------AALLSRARVLTFFSHDH------------ESLGMLLKRA 197 Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 ++ G L + D A + S G R+A L V A + EI DA L+ Sbjct: 198 EEVEGKLLPLDDGARDVLIGMSDGDARVALTLAEEVWSVAR-------SEEILDAGALQK 250 Query: 254 AIDK 257 I + Sbjct: 251 VIQR 254 >gi|121608726|ref|YP_996533.1| recombination factor protein RarA [Verminephrobacter eiseniae EF01-2] gi|121553366|gb|ABM57515.1| Recombination protein MgsA [Verminephrobacter eiseniae EF01-2] Length = 452 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 45/246 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL GQ L++ E+ + + + GPPG+GKTT+A+++A Sbjct: 20 LRPHTLGAVVGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMADAF 74 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRLSIIVEEILYPAME 130 F S S V+ D+ A + ++ R ++F+DE+HR + ++ P +E Sbjct: 75 DAQFISISA-VLGGVKDIRAAVERAEAARDGLMQQRTIVFVDEVHRFNKSQQDAFLPHVE 133 Query: 131 D--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 F E PS LSR T+ + PL +DL Sbjct: 134 SGLFTFIGATTENPSFEVNSALLSRATVY--------VLQPL-------------SAQDL 172 Query: 189 KTIVQRGAKLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 + IV L ++AA E + + G R RLL + A A + + EI D Sbjct: 173 QQIVALAQAQHALPAIEDAAVERLVAYADGDAR---RLLNTLETLAMAAAGQRLA-EITD 228 Query: 248 AALLRL 253 A LL++ Sbjct: 229 AWLLKV 234 >gi|255100294|ref|ZP_05329271.1| recombination factor protein RarA [Clostridium difficile QCD-63q42] Length = 421 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ + GQ N K+ + ++ L +++F GPPG+GKTT+A+++A + Sbjct: 7 IRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKS 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + D+ +++ L + +L+IDEI + ++ + ME+ + L Sbjct: 65 FYKINA-TNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMENGSITL 123 Query: 137 MVG--EGPSARSVKINLSRFTL 156 + E P K LSR T+ Sbjct: 124 IASTTENPYHYVYKALLSRSTV 145 >gi|86147114|ref|ZP_01065431.1| hypothetical protein MED222_12378 [Vibrio sp. MED222] gi|85835179|gb|EAQ53320.1| hypothetical protein MED222_12378 [Vibrio sp. MED222] Length = 449 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 89/221 (40%), Gaps = 25/221 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPETVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + E PS LSR RV LT+ + + IR IED Q Sbjct: 138 FIGATTENPSFELNNALLSR-------ARVYKLTSLNTEDISLVIRQ---AIED----KQ 183 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 RG D +A G R++ L + D AE Sbjct: 184 RGLGDVSADFADNVLDRLAELVNGDARMSLNYLELLYDMAE 224 >gi|327398754|ref|YP_004339623.1| DNA polymerase III subunits gamma and tau [Hippea maritima DSM 10411] gi|327181383|gb|AEA33564.1| DNA polymerase III, subunits gamma and tau [Hippea maritima DSM 10411] Length = 417 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 82/311 (26%), Positives = 126/311 (40%), Gaps = 61/311 (19%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81 RP L E GQ A + LK IE E L H +L GP G GKT+LA+++A+ L Sbjct: 10 RPSKLSEVIGQPVATTILKNAIET-----EKLHHAILLAGPMGTGKTSLARIIAKSLNCQ 64 Query: 82 FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYP------- 127 +GP G+ A + +D DV+ ID +I I+E + YP Sbjct: 65 ----NGPTTEPCGECEACKAIALGKDVDVIEIDGASNRKIENARNIIESVKYPPLKRRFK 120 Query: 128 ----------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 +E F L E P I ATT + + + R I Sbjct: 121 VYIIDEIHMFTLEAFNAMLKTIEEPP--------EYVKFIFATTAIEKIPETILSRCQI- 171 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 + LN +++ ++ A + + +EA I+ S G+ R+A L R F Sbjct: 172 LTLNRIPKNEIEKKLKYIASQENIKIDNEAIELISYASTGSLRVAEGFLDRCIAFKP--- 228 Query: 238 AKTITREIADAALLRLAIDKMGFDQLDL--RYLTMIARNFGGGPVGI----ETISAGLSE 291 TIT+E D +++ +G D+ Y+ I +N + I TIS+ L Sbjct: 229 TDTITKE--DVSVV------VGIPTKDVVNSYVEFIIQNKAKEALDIIKNLNTISSNLQT 280 Query: 292 -PRDAIEDLIE 301 + IE++IE Sbjct: 281 FTKQVIENIIE 291 >gi|47566587|ref|ZP_00237409.1| ATPase, AAA family [Bacillus cereus G9241] gi|47556617|gb|EAL14949.1| ATPase, AAA family [Bacillus cereus G9241] Length = 431 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + +L +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMYRHLILILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 IA+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|328351596|emb|CCA37995.1| Uncharacterized AAA domain-containing protein C26H5.02c [Pichia pastoris CBS 7435] Length = 863 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 22/136 (16%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 LRP+TLEE+ GQ V L+ FIE + + ++ GPPG+GKT+LA+++A Sbjct: 438 LRPKTLEEYVGQSHLVGPTGVLRGFIEHDRVPS-----MILWGPPGVGKTSLARIIAAST 492 Query: 76 RELGVNFRSTSG------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 V +TS V +A + L R VLF DEIHR + ++ P + Sbjct: 493 HNRCVELSATSSGISECRKVFEEARNEMRLTKR---RTVLFCDEIHRFNKSQQDAFLPYV 549 Query: 130 E--DFQLDLMVGEGPS 143 E D L E PS Sbjct: 550 ERGDIILIGATTENPS 565 >gi|296270023|ref|YP_003652655.1| AAA ATPase central domain-containing protein [Thermobispora bispora DSM 43833] gi|296092810|gb|ADG88762.1| AAA ATPase central domain protein [Thermobispora bispora DSM 43833] Length = 436 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 16/120 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPRTL+E GQ + L+ +E+ +A ++ GPPG GKTTLA VV+ Sbjct: 24 MRPRTLDEVVGQRHLLGPDTPLRRLVES-----DAPMSLILWGPPGTGKTTLAYVVSNTT 78 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S V A ++ A + + VLF+DE+HR + ++ L PA+E+ Sbjct: 79 ARRFVEISA-VSAGVKEVRAAIEQARRELGMTGRQTVLFVDEVHRFNKAQQDALLPAVEN 137 >gi|254974821|ref|ZP_05271293.1| recombination factor protein RarA [Clostridium difficile QCD-66c26] gi|255092209|ref|ZP_05321687.1| recombination factor protein RarA [Clostridium difficile CIP 107932] gi|255306233|ref|ZP_05350405.1| recombination factor protein RarA [Clostridium difficile ATCC 43255] gi|255313948|ref|ZP_05355531.1| recombination factor protein RarA [Clostridium difficile QCD-76w55] gi|255516628|ref|ZP_05384304.1| recombination factor protein RarA [Clostridium difficile QCD-97b34] gi|255649727|ref|ZP_05396629.1| recombination factor protein RarA [Clostridium difficile QCD-37x79] gi|306519837|ref|ZP_07406184.1| recombination factor protein RarA [Clostridium difficile QCD-32g58] Length = 421 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ + GQ N K+ + ++ L +++F GPPG+GKTT+A+++A + Sbjct: 7 IRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKS 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + D+ +++ L + +L+IDEI + ++ + ME+ + L Sbjct: 65 FYKINA-TNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMENGSITL 123 Query: 137 MVG--EGPSARSVKINLSRFTL 156 + E P K LSR T+ Sbjct: 124 IASTTENPYHYVYKALLSRSTV 145 >gi|260682883|ref|YP_003214168.1| recombination factor protein RarA [Clostridium difficile CD196] gi|260686481|ref|YP_003217614.1| recombination factor protein RarA [Clostridium difficile R20291] gi|260209046|emb|CBA62163.1| putative ATPase [Clostridium difficile CD196] gi|260212497|emb|CBE03422.1| putative ATPase [Clostridium difficile R20291] Length = 431 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ + GQ N K+ + ++ L +++F GPPG+GKTT+A+++A + Sbjct: 17 IRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKS 74 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + D+ +++ L + +L+IDEI + ++ + ME+ + L Sbjct: 75 FYKINA-TNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMENGSITL 133 Query: 137 MVG--EGPSARSVKINLSRFTL 156 + E P K LSR T+ Sbjct: 134 IASTTENPYHYVYKALLSRSTV 155 >gi|329944922|ref|ZP_08292949.1| recombination factor protein RarA [Actinomyces sp. oral taxon 170 str. F0386] gi|328529733|gb|EGF56629.1| recombination factor protein RarA [Actinomyces sp. oral taxon 170 str. F0386] Length = 476 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 19/148 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L++ GQ + + L + + + L ++ GPPG GKTT+A+++A Sbjct: 62 LRPRALDDVVGQDQLLAPGAPLGRMVASGR-----LSSIVLWGPPGCGKTTVARLLADRT 116 Query: 79 GVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S + DL AA + +LF+DEIHR + ++ P +ED Sbjct: 117 GLVFEQVSA-TFSGVADLRKVFAAAARRREIGQGTLLFVDEIHRFNRAQQDSFLPYVEDG 175 Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157 + ++VG S ++N LSR ++ Sbjct: 176 TV-VLVGATTENPSFELNGALLSRCQVM 202 >gi|238792411|ref|ZP_04636045.1| Replication-associated recombination protein A [Yersinia intermedia ATCC 29909] gi|238728337|gb|EEQ19857.1| Replication-associated recombination protein A [Yersinia intermedia ATCC 29909] Length = 444 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+++ GQ + K A A L ++ GPPG GKTTLA+++ R + Sbjct: 17 MRPLTLDQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 75 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163 >gi|328887601|emb|CAJ68132.2| putative replication-associated recombination protein A RarA [Clostridium difficile] Length = 421 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ + GQ N K+ + ++ L +++F GPPG+GKTT+A+++A + Sbjct: 7 IRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKS 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + D+ +++ L + +L+IDEI + ++ + ME+ + L Sbjct: 65 FYKINA-TNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMENGSITL 123 Query: 137 MVG--EGPSARSVKINLSRFTL 156 + E P K LSR T+ Sbjct: 124 IASTTENPYHYVYKALLSRSTV 145 >gi|158523435|gb|ABW70832.1| AAA-family ATPase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 408 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 36/240 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+++EE GQ S + + + ++ G PG+GKTTLA+++A + Sbjct: 6 LRPQSIEEVIGQEHILSKSGSLTKILAG--DGICSLILCGKPGVGKTTLAKIIASSKRLE 63 Query: 82 FRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 F S V + D+ ++ + + VLF+DEIHR + +++L P +E Sbjct: 64 FFELSA-VDSGVKDVKKIIADNQHLGSFVLFLDEIHRFNKSQQDLLLPYVES-------- 114 Query: 140 EGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG-- 195 + LI ATT L N L R I +RL I + + ++QR Sbjct: 115 ------------GKIILIGATTENPTYYLNNALVSRVFI-LRLKRLNISETRKLIQRAIT 161 Query: 196 -----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 AK + + D+ I S G R LL R+ ++ + + +++ D A+ Sbjct: 162 KDELLAKHS-FEIDDDLYNAIHNYSEGDCRKILNLLERMFLISDRTNTIHLDKDLFDRAV 220 >gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM 5219] gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM 5219] Length = 318 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 95/253 (37%), Gaps = 47/253 (18%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ I RP LE+ GQ +A L+ +I + L H+LF GPPG+GKT A Sbjct: 2 KEEIWIEKYRPYRLEDVVGQSDAIERLRSYI-----KTNNLPHLLFSGPPGVGKTATAVS 56 Query: 74 VAREL------------------GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115 +AREL G++ T AK + D ++F+DE Sbjct: 57 IARELFGDDWRENFTELNASDERGIDVVRTKIKNFAKTSPIGGA-----DFKIIFLDEAD 111 Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175 L+ + L ME + N RF L + + P+Q R Sbjct: 112 ALTPDAQSALRRTMERY----------------TNNCRFIL--SCNYSSKIIEPIQSRCA 153 Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235 + R + + + A+ GL + D+ I + G R A ++ F Sbjct: 154 V-YRFRPLSDDAIGKRCRHIAEKEGLDIADDGIEAIKYVAEGDMRKAINAVQAASMFDTS 212 Query: 236 AHAKTITREIADA 248 HA +I R A A Sbjct: 213 IHADSIYRITATA 225 >gi|126698873|ref|YP_001087770.1| recombination factor protein RarA [Clostridium difficile 630] Length = 431 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ + GQ N K+ + ++ L +++F GPPG+GKTT+A+++A + Sbjct: 17 IRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKS 74 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + + D+ +++ L + +L+IDEI + ++ + ME+ + L Sbjct: 75 FYKINA-TNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMENGSITL 133 Query: 137 MVG--EGPSARSVKINLSRFTL 156 + E P K LSR T+ Sbjct: 134 IASTTENPYHYVYKALLSRSTV 155 >gi|182413522|ref|YP_001818588.1| ATPase central domain-containing protein [Opitutus terrae PB90-1] gi|177840736|gb|ACB74988.1| AAA ATPase central domain protein [Opitutus terrae PB90-1] Length = 448 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 13/117 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L E GQ ++ S L + A+ R +L +F GPPG GKT++A+ +A+E Sbjct: 33 MRPRRLAEVVGQSHILKPGSLLPRLV--AQNRFGSL---IFYGPPGCGKTSIAEAIAQET 87 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL----EDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + V++ +L +L + + +LFIDE+HR + +++L P +E+ Sbjct: 88 NSRFVRVNA-VMSNVAELREILHSARRLPQASTILFIDELHRFNKSQQDLLLPDVEE 143 >gi|301166020|emb|CBW25594.1| putative AAA family ATPase protein [Bacteriovorax marinus SJ] Length = 432 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 84/213 (39%), Gaps = 37/213 (17%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + E + GQ + K E + ++ GPPG GKTTLA ++A Sbjct: 38 RPESFENYFGQEHIFTRYKFLKE------KNFPSLILWGPPGTGKTTLAHILAANSECEL 91 Query: 83 RSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133 + + V+ +L L+T + ++F+DEIHR + ++ L P +E F+ Sbjct: 92 YNFNA-VLGGVNELKKLITTALQTKADFGREAIIFVDEIHRFNKAQQDALLPYVEQGSFK 150 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 E P + K LSR + I L E+L I++ Sbjct: 151 FIGATTENPRSSVNKALLSRVQI---------------------IELKKLSEENLVHIIE 189 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 +K + +T EA I S G R A +L Sbjct: 190 NVSKKFDIKITTEAIQFIGDYSNGDARNALNIL 222 >gi|241764126|ref|ZP_04762162.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN] gi|241366532|gb|EER61025.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN] Length = 391 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 17/175 (9%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFI 111 ++ GPPG GKTTLA ++AR FR+ S P + + AA R VLF+ Sbjct: 1 MVLWGPPGCGKTTLALLLARYADAEFRAISAVLTGLPEVRQVLAEAAQRFAQGRRTVLFV 60 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171 DE+HR + ++ P +E + L VG S ++N + + + RV +L Sbjct: 61 DEVHRFNKGQQDAFLPHIERGTI-LFVGATTENPSFELN----SALLSRCRVHVLEAVSA 115 Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 +RL + E RG G+ V+DE+ EIA + G R A LL Sbjct: 116 QDIVQALRLALDDGE-------RGLGSEGVQVSDESLGEIARAADGDVRRALTLL 163 >gi|162419653|ref|YP_001606119.1| recombination factor protein RarA [Yersinia pestis Angola] gi|165924481|ref|ZP_02220313.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Orientalis str. F1991016] gi|165938969|ref|ZP_02227522.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Orientalis str. IP275] gi|166009749|ref|ZP_02230647.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Antiqua str. E1979001] gi|166211508|ref|ZP_02237543.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Antiqua str. B42003004] gi|167399951|ref|ZP_02305469.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419620|ref|ZP_02311373.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423984|ref|ZP_02315737.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470160|ref|ZP_02334864.1| replication/recombination-associated protein RarA [Yersinia pestis FV-1] gi|170024908|ref|YP_001721413.1| recombination factor protein RarA [Yersinia pseudotuberculosis YPIII] gi|186894820|ref|YP_001871932.1| recombination factor protein RarA [Yersinia pseudotuberculosis PB1/+] gi|270486967|ref|ZP_06204041.1| replication-associated recombination protein A [Yersinia pestis KIM D27] gi|294503368|ref|YP_003567430.1| replication/recombination-associated protein RarA [Yersinia pestis Z176003] gi|162352468|gb|ABX86416.1| replication/recombination-associated protein RarA [Yersinia pestis Angola] gi|165913116|gb|EDR31740.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Orientalis str. IP275] gi|165923541|gb|EDR40673.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Orientalis str. F1991016] gi|165991145|gb|EDR43446.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Antiqua str. E1979001] gi|166207279|gb|EDR51759.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Antiqua str. B42003004] gi|166962361|gb|EDR58382.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050659|gb|EDR62067.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056833|gb|EDR66596.1| replication/recombination-associated protein RarA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751442|gb|ACA68960.1| AAA ATPase central domain protein [Yersinia pseudotuberculosis YPIII] gi|186697846|gb|ACC88475.1| AAA ATPase central domain protein [Yersinia pseudotuberculosis PB1/+] gi|262361408|gb|ACY58129.1| replication/recombination-associated protein RarA [Yersinia pestis D106004] gi|262365055|gb|ACY61612.1| replication/recombination-associated protein RarA [Yersinia pestis D182038] gi|270335471|gb|EFA46248.1| replication-associated recombination protein A [Yersinia pestis KIM D27] gi|294353827|gb|ADE64168.1| replication/recombination-associated protein RarA [Yersinia pestis Z176003] Length = 444 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+++ GQ + K A A L ++ GPPG GKTTLA+++ R + Sbjct: 17 MRPLTLDQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 75 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163 >gi|313891077|ref|ZP_07824696.1| ATPase, AAA family [Streptococcus pseudoporcinus SPIN 20026] gi|313120440|gb|EFR43560.1| ATPase, AAA family [Streptococcus pseudoporcinus SPIN 20026] Length = 423 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQEHLVGEGKIIRRMVEANM--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + IA+ + L VL +DEIHRL ++ L P +E+ Sbjct: 67 FRTFNATTDTKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKTKQDFLLPLLENGN 119 Query: 134 LDLMVG 139 + +M+G Sbjct: 120 I-IMIG 124 >gi|241668070|ref|ZP_04755648.1| recombination factor protein RarA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876605|ref|ZP_05249315.1| recombination factor protein rarA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842626|gb|EET21040.1| recombination factor protein rarA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 412 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 36/240 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+++EE GQ S + + + ++ G PG+GKTTLA+++A + Sbjct: 10 LRPQSIEEVIGQEHILSKSGSLTKILAG--DGICSLILCGKPGVGKTTLAKIIASSKRLE 67 Query: 82 FRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 F S V + D+ ++ + + VLF+DEIHR + +++L P +E Sbjct: 68 FFELSA-VDSGVKDVKKIIADNQHLGSFVLFLDEIHRFNKSQQDLLLPYVES-------- 118 Query: 140 EGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG-- 195 + LI ATT L N L R I +RL I + + ++QR Sbjct: 119 ------------GKIILIGATTENPTYYLNNALVSRVFI-LRLKRLNISETRKLIQRAIT 165 Query: 196 -----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 AK + + D+ I S G R LL R+ ++ + + +++ D A+ Sbjct: 166 KDELLAKHS-FEIDDDLYNAIHNYSEGDCRKILNLLERMFLISDRTNTIHLDKDLFDRAV 224 >gi|114327245|ref|YP_744402.1| recombination factor protein RarA [Granulibacter bethesdensis CGDNIH1] gi|114315419|gb|ABI61479.1| ATPase, AAA family [Granulibacter bethesdensis CGDNIH1] Length = 452 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L++ GQ + A L+ E+ L ++ GPPG GKTT+A+++AR Sbjct: 36 LRPASLDDVVGQDHLLGAEGPLRRMTES-----RVLSSIILWGPPGTGKTTIARLLARST 90 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 ++F + S + + DL + R +LF DEIHR + ++ P +ED Sbjct: 91 DLHFEAISA-IQSGVADLRKVFEAARQRRAAGKGTLLFCDEIHRFNRGQQDAFLPVVEDG 149 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS LSR Sbjct: 150 TVTLVGATTENPSFELNSALLSR 172 >gi|238749783|ref|ZP_04611288.1| Replication-associated recombination protein A [Yersinia rohdei ATCC 43380] gi|238712438|gb|EEQ04651.1| Replication-associated recombination protein A [Yersinia rohdei ATCC 43380] Length = 444 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+++ GQ + K A A L ++ GPPG GKTTLA+++ R + Sbjct: 17 MRPLTLDQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 75 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163 >gi|160934386|ref|ZP_02081773.1| hypothetical protein CLOLEP_03258 [Clostridium leptum DSM 753] gi|156867059|gb|EDO60431.1| hypothetical protein CLOLEP_03258 [Clostridium leptum DSM 753] Length = 491 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 17/151 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+T+++ GQ + L+ IE+ + + +++F GP G+GKTTLA ++AR+ Sbjct: 76 LRPKTIDDMVGQRHLLGPGKALRRIIESGE-----IPNLIFYGPSGVGKTTLASIIARQT 130 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132 R +G A DL + T E+ +L++DEI + ++ L +E+ Sbjct: 131 NRALRKLNG-TTAGTADLREIFTEAENTFTAPNGILLYLDEIQYFNKKQQQTLLEFIENG 189 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATT 161 ++ L+ E P LSR T+ T Sbjct: 190 KITLIASTTENPYFYVYNAILSRSTVFEFKT 220 >gi|22126674|ref|NP_670097.1| recombination factor protein RarA [Yersinia pestis KIM 10] gi|45441042|ref|NP_992581.1| recombination factor protein RarA [Yersinia pestis biovar Microtus str. 91001] gi|51595743|ref|YP_069934.1| recombination factor protein RarA [Yersinia pseudotuberculosis IP 32953] gi|108806665|ref|YP_650581.1| recombination factor protein RarA [Yersinia pestis Antiqua] gi|108812763|ref|YP_648530.1| recombination factor protein RarA [Yersinia pestis Nepal516] gi|145599589|ref|YP_001163665.1| recombination factor protein RarA [Yersinia pestis Pestoides F] gi|149366635|ref|ZP_01888669.1| putative ATPase protein [Yersinia pestis CA88-4125] gi|153948669|ref|YP_001401559.1| recombination factor protein RarA [Yersinia pseudotuberculosis IP 31758] gi|218928526|ref|YP_002346401.1| recombination factor protein RarA [Yersinia pestis CO92] gi|229841347|ref|ZP_04461506.1| recombination protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843452|ref|ZP_04463598.1| recombination protein [Yersinia pestis biovar Orientalis str. India 195] gi|229895824|ref|ZP_04510994.1| recombination protein [Yersinia pestis Pestoides A] gi|229903172|ref|ZP_04518285.1| recombination protein [Yersinia pestis Nepal516] gi|21959690|gb|AAM86348.1|AE013883_2 putative polynucleotide enzyme [Yersinia pestis KIM 10] gi|45435901|gb|AAS61458.1| putative ATPase protein [Yersinia pestis biovar Microtus str. 91001] gi|51589025|emb|CAH20643.1| putative polynucleotide ATPase protein [Yersinia pseudotuberculosis IP 32953] gi|108776411|gb|ABG18930.1| Recombination protein MgsA [Yersinia pestis Nepal516] gi|108778578|gb|ABG12636.1| Recombination protein MgsA [Yersinia pestis Antiqua] gi|115347137|emb|CAL20030.1| putative ATPase protein [Yersinia pestis CO92] gi|145211285|gb|ABP40692.1| Recombination protein MgsA [Yersinia pestis Pestoides F] gi|149291009|gb|EDM41084.1| putative ATPase protein [Yersinia pestis CA88-4125] gi|152960164|gb|ABS47625.1| replication/recombination-associated protein RarA [Yersinia pseudotuberculosis IP 31758] gi|229678942|gb|EEO75045.1| recombination protein [Yersinia pestis Nepal516] gi|229689799|gb|EEO81860.1| recombination protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697713|gb|EEO87760.1| recombination protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700747|gb|EEO88776.1| recombination protein [Yersinia pestis Pestoides A] gi|320015765|gb|ADV99336.1| recombination protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 447 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+++ GQ + K A A L ++ GPPG GKTTLA+++ R + Sbjct: 20 MRPLTLDQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 138 IGATTENPSFELNSALLSRARVYLLKALT 166 >gi|328951016|ref|YP_004368351.1| AAA ATPase central domain protein [Marinithermus hydrothermalis DSM 14884] gi|328451340|gb|AEB12241.1| AAA ATPase central domain protein [Marinithermus hydrothermalis DSM 14884] Length = 431 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 23/136 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+LEE GQ K F +E + L ++ GPPG+GKTTLA+V+A+ + Sbjct: 14 VRPRSLEEVVGQEHLTGPGKPFRRMLEIGR-----LHSMILWGPPGVGKTTLARVLAQGV 68 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED---------RDVLFIDEIHRLSIIVEEILYPAM 129 F P+ A A + + + R VLF+DE+HR + ++ L P + Sbjct: 69 RAEFI----PLSAVAAGVKEVREAVARAEAAARVGRRTVLFLDEVHRFNKAQQDALLPHV 124 Query: 130 EDFQLDLM--VGEGPS 143 E L L+ E PS Sbjct: 125 ESGLLTLIGATTENPS 140 >gi|188588213|ref|YP_001920502.1| recombination factor protein RarA [Clostridium botulinum E3 str. Alaska E43] gi|251781076|ref|ZP_04823996.1| ATPase, AAA family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498494|gb|ACD51630.1| ATPase, AAA family [Clostridium botulinum E3 str. Alaska E43] gi|243085391|gb|EES51281.1| ATPase, AAA family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 414 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 26/212 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE+F GQ + K K++ + + + GPPG GKTTLA ++A + Sbjct: 8 MRPTKLEDFVGQKQIIGEGKPLYNIIKSKN--IVNCILYGPPGTGKTTLANIMANYVDRK 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + A D+ + ++L+ + V++IDE+ S ++ L +E Q+ L Sbjct: 66 FYKLNATT-ASVKDIQEIASSLDTLLGYNGVVVYIDELQHFSKKQQQSLLEFIEKGQITL 124 Query: 137 MVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + E P K LSR + T L T+ + +FG+ ++ ++ ++ Sbjct: 125 IASTTENPYFVLHKAILSRCNIF---TFKPLTTDDI--KFGV--------VKAIERAIEN 171 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 G + + TD+A IA S+G R A +L Sbjct: 172 GME---IKYTDDAISYIAEISQGDYRKAYNIL 200 >gi|305681055|ref|ZP_07403862.1| recombination factor protein RarA [Corynebacterium matruchotii ATCC 14266] gi|305659260|gb|EFM48760.1| recombination factor protein RarA [Corynebacterium matruchotii ATCC 14266] Length = 451 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 19/148 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ + A L+ IE + + V+ GPPG GKTT+A ++++ Sbjct: 34 MRPRSLDEVAGQDHVLAAGKPLRRLIEGSGDAS-----VILYGPPGTGKTTIASLISQAT 88 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F S + + ++ A++ RD VLFIDE+HR S ++ L A+E+ Sbjct: 89 ARKFVGLSA-LNSGVKEVRAVIDQAR-RDLIQGMSTVLFIDEVHRFSKTQQDALLAAVEN 146 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E PS V LSR ++ Sbjct: 147 RVVLLVAATTENPSFSVVAPLLSRSLIV 174 >gi|109898773|ref|YP_662028.1| recombination factor protein RarA [Pseudoalteromonas atlantica T6c] gi|109701054|gb|ABG40974.1| Recombination protein MgsA [Pseudoalteromonas atlantica T6c] Length = 445 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 18/134 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+ + E+ GQ V L+ IE + ++ GPPG GKTTLA+++A Sbjct: 22 MRPQNIAEYFGQQHIVGVGKPLRSAIERGHCHS-----MILWGPPGTGKTTLAEIIAMHC 76 Query: 79 GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 + S V + D+ + + N R +LF+DE+HR + ++ P +ED Sbjct: 77 DAHIERISA-VTSGVKDIRSAIEQAKQNALNQAKRTILFVDEVHRFNKSQQDAFLPFIED 135 Query: 132 FQLDLM--VGEGPS 143 + + E PS Sbjct: 136 GTITFIGATTENPS 149 >gi|225859546|ref|YP_002741056.1| recombination factor protein RarA [Streptococcus pneumoniae 70585] gi|225721322|gb|ACO17176.1| chromosome segregation helicase [Streptococcus pneumoniae 70585] Length = 423 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ + K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGSGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|225021329|ref|ZP_03710521.1| hypothetical protein CORMATOL_01348 [Corynebacterium matruchotii ATCC 33806] gi|224945711|gb|EEG26920.1| hypothetical protein CORMATOL_01348 [Corynebacterium matruchotii ATCC 33806] Length = 451 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 19/148 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E GQ + A L+ IE + + V+ GPPG GKTT+A ++++ Sbjct: 34 MRPRSLDEVAGQDHVLAAGKPLRRLIEGSGDAS-----VILYGPPGTGKTTIASLISQAT 88 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F S + + ++ A++ RD VLFIDE+HR S ++ L A+E+ Sbjct: 89 ARKFVGLSA-LNSGVKEVRAVIDQAR-RDLIQGMSTVLFIDEVHRFSKTQQDALLAAVEN 146 Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E PS V LSR ++ Sbjct: 147 RVVLLVAATTENPSFSVVAPLLSRSLIV 174 >gi|182418940|ref|ZP_02950197.1| ATPase, AAA family [Clostridium butyricum 5521] gi|237668523|ref|ZP_04528507.1| AAA ATPase, central domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377223|gb|EDT74791.1| ATPase, AAA family [Clostridium butyricum 5521] gi|237656871|gb|EEP54427.1| AAA ATPase, central domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 414 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 26/212 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE+F GQ + K K++ + + + GPPG GKTTLA ++A + Sbjct: 8 MRPTKLEDFVGQKQIIGEGKPLYNIIKSKN--IVNCILYGPPGTGKTTLANIMANYVDRK 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + A D+ + ++L+ + V++IDE+ S ++ L +E Q+ L Sbjct: 66 FYKLNATT-ASVKDIQEIASSLDTLLGYNGVVVYIDELQHFSKKQQQSLLEFIEKGQITL 124 Query: 137 MVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + E P K LSR + T L T+ + +FG+ ++ ++ ++ Sbjct: 125 IASTTENPYFVLHKAILSRCNIF---TFKPLTTDDI--KFGV--------VKAIERAIEN 171 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 G + + TD+A IA S+G R A +L Sbjct: 172 GME---IKYTDDAISYIAEISQGDYRKAYNIL 200 >gi|16125532|ref|NP_420096.1| recombination factor protein RarA [Caulobacter crescentus CB15] gi|221234279|ref|YP_002516715.1| recombination factor protein RarA [Caulobacter crescentus NA1000] gi|13422618|gb|AAK23264.1| ATPase, AAA family [Caulobacter crescentus CB15] gi|220963451|gb|ACL94807.1| ATPase, AAA family [Caulobacter crescentus NA1000] Length = 433 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L+E GQ A AR L ++ GPPG GKTT+A+++A+ G Sbjct: 22 LRPQSLDEVVGQQHLLGPEGPIGRMAAARR--LASMILWGPPGTGKTTIARLLAKAGGYE 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131 F S V + DL R +LF+DEIHR + ++ P +E+ Sbjct: 80 FMQISA-VFSGVADLKKAFEQARARRMAGQSTLLFVDEIHRFNRAQQDGFLPFVEE 134 >gi|332184520|gb|AEE26774.1| ATPase, AAA family [Francisella cf. novicida 3523] Length = 412 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 15/149 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++++E GQ S + + + + ++ G PG+GKT+LA+++A + Sbjct: 10 IRPQSIDEIVGQEHLLSQDGILTKILAV--DGICSLVLCGKPGVGKTSLARIIANSKKLE 67 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137 F S V + D+ ++ + + D VLF+DEIHR + +++L P +E ++ L+ Sbjct: 68 FFELSA-VDSGVKDVKKIIADNQHLDSFVLFLDEIHRFNKSQQDLLLPYVESGKIILIGA 126 Query: 138 VGEGPS--------ARSVKINLSRFTLIA 158 E P+ +R + L R +L+A Sbjct: 127 TTENPTYYLNDALVSRLFILRLKRLSLVA 155 >gi|332531345|ref|ZP_08407253.1| recombination factor protein RarA [Hylemonella gracilis ATCC 19624] gi|332039209|gb|EGI75627.1| recombination factor protein RarA [Hylemonella gracilis ATCC 19624] Length = 436 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 17/144 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL E GQ L++ E+ + + + GPPG GKTT+A+++A Sbjct: 17 LRPHTLGEVIGQQHLLGEGMPLRIAFESGQPHS-----CILWGPPGTGKTTIARLMADAF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMED 131 G F S S + I +A +LA + + R ++F+DE+HR + ++ P +E Sbjct: 72 GAQFISISAVLGGVKDIREAVELAEAARDGLQQQRTIVFVDEVHRFNKSQQDAFLPHVES 131 Query: 132 --FQLDLMVGEGPSARSVKINLSR 153 F E PS LSR Sbjct: 132 GLFTFIGATTENPSFEVNSALLSR 155 >gi|312864415|ref|ZP_07724648.1| recombination factor protein RarA [Streptococcus downei F0415] gi|311100136|gb|EFQ58347.1| recombination factor protein RarA [Streptococcus downei F0415] Length = 426 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDDIIGQEHMVGQGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATTDSKKRLQEIAEEAKFSGGL----VLMLDEIHRLDKTKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|227542196|ref|ZP_03972245.1| crossover junction endodeoxyribonuclease [Corynebacterium glucuronolyticum ATCC 51866] gi|227182025|gb|EEI62997.1| crossover junction endodeoxyribonuclease [Corynebacterium glucuronolyticum ATCC 51866] Length = 574 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L+E GQ + K + EA V+ GPPG GKTT+A +++ G Sbjct: 33 MRPRSLDEVVGQQHLLAPGKPLRRLIEGDGEA--SVILYGPPGTGKTTIASLISVATGNR 90 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED 131 F S + + ++ A++ R VLFIDE+HR S ++ L A+E+ Sbjct: 91 FVGLSA-LDSGVKEVRAVIDTARKKLIEGTRTVLFIDEVHRFSKTQQDALLAAVEN 145 >gi|227488807|ref|ZP_03919123.1| crossover junction endodeoxyribonuclease [Corynebacterium glucuronolyticum ATCC 51867] gi|227091229|gb|EEI26541.1| crossover junction endodeoxyribonuclease [Corynebacterium glucuronolyticum ATCC 51867] Length = 542 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR+L+E GQ + K + EA V+ GPPG GKTT+A +++ G Sbjct: 1 MRPRSLDEVVGQQHLLAPGKPLRRLIEGDGEA--SVILYGPPGTGKTTIASLISVATGNR 58 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED 131 F S + + ++ A++ R VLFIDE+HR S ++ L A+E+ Sbjct: 59 FVGLSA-LDSGVKEVRAVIDTARKKLIEGTRTVLFIDEVHRFSKTQQDALLAAVEN 113 >gi|50307855|ref|XP_453921.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643055|emb|CAH01017.1| KLLA0D19360p [Kluyveromyces lactis] Length = 559 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 25/156 (16%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LRP++L ++ GQ + L ++IE + ++ GPPG+GKT+LA+++ Sbjct: 120 LRPKSLNDYIGQQHILNRETGCLYLYIEKG-----IIPSMILWGPPGVGKTSLARLLTNT 174 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLE---DRD-----------VLFIDEIHRLSIIVEE 123 + + +++ ++ + A T L D+ VLFIDEIHR + ++ Sbjct: 175 VNIQSDASTKYLLLETSATKANTTELRSIFDKSKKEYHLTKRMTVLFIDEIHRFNKAQQD 234 Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +L P +E+ + L+ E PS + LSR L Sbjct: 235 LLLPHIENGDIVLIGATTENPSFQLNNALLSRCQLF 270 >gi|312795386|ref|YP_004028308.1| ATPase AAA [Burkholderia rhizoxinica HKI 454] gi|312167161|emb|CBW74164.1| ATPase, AAA family [Burkholderia rhizoxinica HKI 454] Length = 438 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+T++E GQ L+V E+ + + ++ GPPG+GKTTLA+++A Sbjct: 15 LRPKTIDEVIGQRHLLGENKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMAAAF 69 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S + I +A DLA + ++F+DE+HR + ++ P +E Sbjct: 70 HAEFIALSAVLSGVKDIREAVDLAQAHRARGRQTLVFVDEVHRFNKSQQDAFLPHVES-G 128 Query: 134 LDLMVGEGPSARSVKIN 150 L + VG S ++N Sbjct: 129 LFVFVGATTENPSFEVN 145 >gi|161525591|ref|YP_001580603.1| recombination factor protein RarA [Burkholderia multivorans ATCC 17616] gi|189349680|ref|YP_001945308.1| recombination factor protein RarA [Burkholderia multivorans ATCC 17616] gi|221201180|ref|ZP_03574220.1| ATPase, AAA family [Burkholderia multivorans CGD2M] gi|221206366|ref|ZP_03579379.1| ATPase, AAA family [Burkholderia multivorans CGD2] gi|160343020|gb|ABX16106.1| AAA ATPase central domain protein [Burkholderia multivorans ATCC 17616] gi|189333702|dbj|BAG42772.1| putative ATPase [Burkholderia multivorans ATCC 17616] gi|221173675|gb|EEE06109.1| ATPase, AAA family [Burkholderia multivorans CGD2] gi|221179030|gb|EEE11437.1| ATPase, AAA family [Burkholderia multivorans CGD2M] Length = 436 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 14/118 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130 F + S + I +A D A N R +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSAVLGGVKDIREAMDQAKETLNRTGRHTILFVDEIHRFNKGQQDALLPFVE 129 >gi|299135226|ref|ZP_07028417.1| AAA ATPase central domain protein [Afipia sp. 1NLS2] gi|298590203|gb|EFI50407.1| AAA ATPase central domain protein [Afipia sp. 1NLS2] Length = 443 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L + GQ + R L ++F GPPG GKTT+A+++A ++ Sbjct: 30 LRPHALADVVGQDHILGPDGALTRMLETRT--LGSLIFWGPPGTGKTTVARLLADATELH 87 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + R +LF+DE+HR + ++ P MED + Sbjct: 88 FEQISA-VFSGVADLKKVFDAARARRETGKGTLLFVDEVHRFNRAQQDSFLPVMEDGTV- 145 Query: 136 LMVGEGPSARSVKIN 150 ++VG S ++N Sbjct: 146 VLVGATTENPSFELN 160 >gi|300120988|emb|CBK21370.2| unnamed protein product [Blastocystis hominis] Length = 475 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 26/148 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARA----EALDHVLFVGPPGLGKTTLAQVVARE 77 +RP + E G N ++F E + R + + GP G GKTT+A +++++ Sbjct: 1 MRPTSFAELQG------NEELFAEGSVVRTLLEKDPPPSFILCGPSGCGKTTVAYIISKQ 54 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRD----------VLFIDEIHRLSIIVEEILYP 127 F+S S DL + + L++ D +LF+DEIHR S +++ P Sbjct: 55 TTCPFKSLS----CCTSDLKEVRSVLDECDKVFFSTKTPTILFLDEIHRFSKNQQDVFLP 110 Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSR 153 +E +L L+ E PS + LSR Sbjct: 111 YVESGKLVLIGATTENPSFSIIPALLSR 138 >gi|238757607|ref|ZP_04618791.1| Replication-associated recombination protein A [Yersinia aldovae ATCC 35236] gi|238704112|gb|EEP96645.1| Replication-associated recombination protein A [Yersinia aldovae ATCC 35236] Length = 444 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+++ GQ + K A A L ++ GPPG GKTTLA+++ R + Sbjct: 17 MRPLTLDQYIGQQHLLAPGKPLPRAIIA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 75 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134 Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161 + E PS S ++ +R L+ A T Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163 >gi|256371343|ref|YP_003109167.1| AAA ATPase central domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007927|gb|ACU53494.1| AAA ATPase central domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 370 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 33/214 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79 LRP +L E GQ A + L+ A + A V+ GPPG+GKTT+A ++AR G Sbjct: 18 LRPTSLAEVLGQDHARARLEALATAPRTIA-----VIMTGPPGVGKTTIASLLARARGEH 72 Query: 80 -VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 V +T V + +A AA D + F+DE+HR QLDL Sbjct: 73 LVELHATDTGVRDLREARAEAARRARHGDGTLWFVDEVHRFG------------RTQLDL 120 Query: 137 MVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++ I + I ATT L+ L R + +RL E L+ + +R Sbjct: 121 LLA--------PIERGEISFIGATTENPAVTLSPALLSRCDV-VRLRALEPPVLRAVAER 171 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228 GL D A + +RG R R+L R Sbjct: 172 ALAHLGLIADDAAIAWLVAAARGDARALLRILER 205 >gi|194288885|ref|YP_002004792.1| recombination factor protein rara [Cupriavidus taiwanensis LMG 19424] gi|193222720|emb|CAQ68723.1| recombination helicase ATPase [Cupriavidus taiwanensis LMG 19424] Length = 464 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRT++E GQ L+V E+ + + ++ GPPG+GKTTLA+++A Sbjct: 21 LRPRTIDEVIGQQHLLGPGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMADAF 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V++ D+ + E R ++F+DE+HR + ++ P +E Sbjct: 76 DAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 132 >gi|310815956|ref|YP_003963920.1| AAA ATPase [Ketogulonicigenium vulgare Y25] gi|308754691|gb|ADO42620.1| AAA ATPase [Ketogulonicigenium vulgare Y25] Length = 434 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 109/242 (45%), Gaps = 44/242 (18%) Query: 20 SLLRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ++LRP +L++ GQ E A S L+ I A AL V+ GPPG+GKT++A+ V Sbjct: 18 AILRPTSLDDVIGQDEITRAGSILRRRIAAG-----ALGSVILYGPPGVGKTSIARAVGA 72 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL-FIDEIHRLSIIVEEILYPAMEDFQLD 135 LG +FR + A D+ L +L F+DE+ R S + L E+ +D Sbjct: 73 MLGKSFRPLNA-TRAGVSDIRKLADEARMTPLLIFVDEVQRFSATQTDDLLAICEEGLVD 131 Query: 136 LMVGEGPSARSVKINLSRFTLIAATT--RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 M ATT +LT L R I ++L ++ ++ +++ Sbjct: 132 FM--------------------GATTGNPYHVLTPALVSRSTI-LKLEPLDLTAMEQVLR 170 Query: 194 RG-----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 RG A T +A++D IA R+ G R A +L + V H+ T+ +I DA Sbjct: 171 RGLQHLAAGGTEVAISDPHLRMIAGRAGGDARRALTVLESL----SVGHSGTV--QITDA 224 Query: 249 AL 250 L Sbjct: 225 ML 226 >gi|226941287|ref|YP_002796361.1| recombination factor protein RarA [Laribacter hongkongensis HLHK9] gi|226716214|gb|ACO75352.1| recombination factor protein RarA [Laribacter hongkongensis HLHK9] Length = 442 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 80/321 (24%), Positives = 121/321 (37%), Gaps = 48/321 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP TL++ GQ K A ++R ++ GPPG+GKTTLA+++A Sbjct: 19 LRPTTLDDVVGQQHLIGTGKPLRLAIESRTP--HSMILWGPPGVGKTTLARILAHAFDAE 76 Query: 82 FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED--FQL 134 F S I +A + A + +LF+DE+HR + ++ P +E F Sbjct: 77 FTPLSAVFSGVKDIREAVERAQMAAARGRHTILFVDEVHRFNKSQQDAFLPFVEAGLFTF 136 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 E PS LSR + + PL D ++E L Q Sbjct: 137 IGATTENPSFEVNAALLSRAQVY--------VLKPLTDA----------DLEALFVRAQA 178 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 L GL + A +A + G R LL + R A + + D A L Sbjct: 179 AGVLEGLELDAAARAVLAGYADGDARRFLNLLEQTRTAARAQQVQHV-----DTAFLE-- 231 Query: 255 IDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQ--QGFIQ 311 LT+ AR F GG + ISA R + D ++ + G Sbjct: 232 -----------NVLTLNARRFDKGGDAFYDQISALHKSVRGSHPDAALYWLTRMLDGGAD 280 Query: 312 RTPRGRLLMPIAWQHLGIDIP 332 R L+ +AW+ +G+ P Sbjct: 281 PHYLARRLVRMAWEDIGLADP 301 >gi|15675782|ref|NP_269956.1| recombination factor protein RarA [Streptococcus pyogenes M1 GAS] gi|13623007|gb|AAK34677.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] Length = 422 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|291166167|gb|EFE28213.1| ATPase, AAA family [Filifactor alocis ATCC 35896] Length = 420 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 73/144 (50%), Gaps = 10/144 (6%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 ++RP ++E+ GQ K+ + + + +++F GPPG GKTT+A+++A+ + Sbjct: 8 IVRPHSIEQVVGQSHIIGKNKLINRLIEQKQ--MINLIFYGPPGTGKTTVAEILAKNSDL 65 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 ++ + +K D+ + N+ +++IDEI + +++L +E Q+ Sbjct: 66 SYYKLNA-TYSKTQDIRDIAENINTFSGINGILIYIDEIQNFNKKQQQLLLEYIEKGQII 124 Query: 136 LMVG--EGPSARSVKINLSRFTLI 157 L+ E P + K LSR T+I Sbjct: 125 LIASTTENPYHQIYKSLLSRCTVI 148 >gi|220926868|ref|YP_002502170.1| recombination factor protein RarA [Methylobacterium nodulans ORS 2060] gi|219951475|gb|ACL61867.1| AAA ATPase central domain protein [Methylobacterium nodulans ORS 2060] Length = 437 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L E GQ + R L ++ GPPG GKTT+A+++ARE ++ Sbjct: 22 LRPTSLAEVVGQEHLTGEGGALTRLLRGRN--LGSLILWGPPGTGKTTVARLLARETALH 79 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F S + K D A +LF+DEIHR + + P ED + L Sbjct: 80 FEQISAIFSGVAELRKVFDAARARRAAGQGTLLFVDEIHRFNRAQLDAFLPVTEDGTVTL 139 Query: 137 M--VGEGPS 143 + E PS Sbjct: 140 VGATTENPS 148 >gi|118444607|ref|YP_878358.1| recombination factor protein RarA [Clostridium novyi NT] gi|118135063|gb|ABK62107.1| ATPase, AAA family [Clostridium novyi NT] Length = 419 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 20/109 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L EF GQ L+ IE + L ++ GPPG+GKTTLA +++ E Sbjct: 21 MRPRNLNEFFGQKHIIGKGKLLRRLIET-----DNLTSIILYGPPGVGKTTLAYIISLET 75 Query: 79 GVNF---RSTSGPV------IAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 F +TS V I KA + +L R + FIDEIH L Sbjct: 76 KSEFVKLNATSAGVKEIREYIKKAEE---VLKFYGKRTIFFIDEIHSLK 121 >gi|262274499|ref|ZP_06052310.1| ATPase AAA family [Grimontia hollisae CIP 101886] gi|262221062|gb|EEY72376.1| ATPase AAA family [Grimontia hollisae CIP 101886] Length = 444 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L+E+ GQ + K A ++ L ++ GPPG GKTTLA+V A Sbjct: 19 MRPTNLKEYIGQKHLLAEGKPLRRALES--GQLHSMILWGPPGTGKTTLAEVAAGYANAE 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ + ++ R VLF+DE+HR + ++ P +ED + Sbjct: 77 IERVSA-VTSGVKDIRLAIDKAKENQMVGRRTVLFVDEVHRFNKSQQDAFLPHIEDGTIT 135 Query: 136 LM--VGEGPS 143 + E PS Sbjct: 136 FIGATTENPS 145 >gi|255591254|ref|XP_002535477.1| werner helicase interacting protein, putative [Ricinus communis] gi|223522990|gb|EEF26907.1| werner helicase interacting protein, putative [Ricinus communis] Length = 422 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|209560132|ref|YP_002286604.1| recombination factor protein RarA [Streptococcus pyogenes NZ131] gi|209541333|gb|ACI61909.1| ATPase, AAA family [Streptococcus pyogenes NZ131] Length = 422 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|19746896|ref|NP_608032.1| recombination factor protein RarA [Streptococcus pyogenes MGAS8232] gi|94995187|ref|YP_603285.1| recombination factor protein RarA [Streptococcus pyogenes MGAS10750] gi|19749141|gb|AAL98531.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gi|94548695|gb|ABF38741.1| ATPase, AAA family [Streptococcus pyogenes MGAS10750] Length = 422 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|218710024|ref|YP_002417645.1| recombination factor protein RarA [Vibrio splendidus LGP32] gi|218323043|emb|CAV19220.1| Hypothetical protein VS_2044 [Vibrio splendidus LGP32] Length = 451 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 23 MRPETVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 80 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + D+ + + R +LF+DE+HR + ++ P +ED + Sbjct: 81 VERVSA-VTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 139 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 140 FIGATTENPSFELNNALLSRARVYKLTS 167 >gi|71911512|ref|YP_283062.1| recombination factor protein RarA [Streptococcus pyogenes MGAS5005] gi|71854294|gb|AAZ52317.1| ATPase, AAA family [Streptococcus pyogenes MGAS5005] Length = 422 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|116618925|ref|YP_819296.1| recombination factor protein RarA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097772|gb|ABJ62923.1| Recombination protein MgsA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 428 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 5/111 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +EE GQ K+ A L ++ GPPG GKT++A +A Sbjct: 10 MRPTKIEEIVGQQHLVGEGKIIWRMVAAHR--LSSMILYGPPGTGKTSIASAIAGSSKYA 67 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + ++ DL ++ + VL +DEIHRL+ I ++ L P +E Sbjct: 68 FRMLNAATDSQK-DLQIVVEEAKMSGTVVLLLDEIHRLNKIKQDFLLPHLE 117 >gi|94989334|ref|YP_597435.1| recombination factor protein RarA [Streptococcus pyogenes MGAS9429] gi|94993223|ref|YP_601322.1| recombination factor protein RarA [Streptococcus pyogenes MGAS2096] gi|94542842|gb|ABF32891.1| ATPase, AAA family [Streptococcus pyogenes MGAS9429] gi|94546731|gb|ABF36778.1| ATPase, AAA family [Streptococcus pyogenes MGAS2096] Length = 422 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|71904346|ref|YP_281149.1| recombination factor protein RarA [Streptococcus pyogenes MGAS6180] gi|139474470|ref|YP_001129186.1| recombination factor protein RarA [Streptococcus pyogenes str. Manfredo] gi|306826574|ref|ZP_07459881.1| AAA family ATPase [Streptococcus pyogenes ATCC 10782] gi|71803441|gb|AAX72794.1| ATPase, AAA family [Streptococcus pyogenes MGAS6180] gi|134272717|emb|CAM30989.1| putative ATPase [Streptococcus pyogenes str. Manfredo] gi|304431212|gb|EFM34214.1| AAA family ATPase [Streptococcus pyogenes ATCC 10782] Length = 422 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|317047548|ref|YP_004115196.1| AAA ATPase central domain-containing protein [Pantoea sp. At-9b] gi|316949165|gb|ADU68640.1| AAA ATPase central domain protein [Pantoea sp. At-9b] Length = 449 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL ++ GQ + A L IEA L ++ GPPG GKTTLA+++A Sbjct: 21 MRPVTLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEIIAHYG 75 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A + R +LF+DE+HR + ++ P +ED Sbjct: 76 KADVERISAVTSGVKEIREAIERARQNRQVGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 135 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 136 ITFIGATTENPS 147 >gi|254496577|ref|ZP_05109445.1| recombination factor protein RarA [Legionella drancourtii LLAP12] gi|254354201|gb|EET12868.1| recombination factor protein RarA [Legionella drancourtii LLAP12] Length = 432 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 75/322 (23%), Positives = 131/322 (40%), Gaps = 49/322 (15%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LLRP+ +++ GQ + K + R L ++ GPPG+GKTT+A + A Sbjct: 15 LLRPKHIDDVIGQSHLLGDGKPLRLSFLGRK--LHSMILWGPPGVGKTTIAHITAAAFEC 72 Query: 81 NFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 + + S V + D+ A + ++ +LFIDEIHR + ++ L P E L Sbjct: 73 EWIALSA-VFSGVKDIRAAMERAQENLAQGKHTILFIDEIHRFNKAQQDALLPYTES-GL 130 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 +G S ++N + + + +V +L PL + E+LK + Q+ Sbjct: 131 VTFIGATTENPSFEVN----SALLSRAQVYVL-KPLTN-------------EELKQLFQK 172 Query: 195 G--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 A L+ ++ D A + + G R RLL V A I + + + Sbjct: 173 AHQAVLSHISFDDAAVAIVIDYADGDAR---RLLNCVEQLQTACTAMNINQVDKEFVINS 229 Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ--QGFI 310 LA + FD+ GG + ISA R + D ++ + G + Sbjct: 230 LAQNTRRFDK--------------GGENFYDQISALHKSVRGSDPDAALYWLCRMLDGGV 275 Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332 R ++ +AW+ +G+ P Sbjct: 276 DPHYLARRIVRMAWEDIGLADP 297 >gi|323498307|ref|ZP_08103309.1| recombination factor protein RarA [Vibrio sinaloensis DSM 21326] gi|323316735|gb|EGA69744.1| recombination factor protein RarA [Vibrio sinaloensis DSM 21326] Length = 448 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 9/147 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQNIEQYIGQQHILGEGKPLRRALEA--GHVHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S AA+ E+ R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSAVTSGVKEIRAAIEKARENKRAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138 Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165 >gi|291295124|ref|YP_003506522.1| AAA ATPase central domain-containing protein [Meiothermus ruber DSM 1279] gi|290470083|gb|ADD27502.1| AAA ATPase central domain protein [Meiothermus ruber DSM 1279] Length = 432 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 13/129 (10%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ L+ +E + L + GPPG GKTTLA+++A+ + Sbjct: 21 LRPTTLDDVVGQEHLTGPGKPLRRMLETQR-----LSSFILWGPPGSGKTTLARLMAQGV 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 G + S V A D+ ++ +++ VLF+DEIHR + ++ L P +E L L Sbjct: 76 GRAMVALSA-VNAGLKDIKEVVAQAQEQGGLVLFLDEIHRFNKAQQDALLPHVESGLLTL 134 Query: 137 M--VGEGPS 143 + E PS Sbjct: 135 IGATTENPS 143 >gi|258646786|ref|ZP_05734255.1| ATP-dependent protease, Lon family [Dialister invisus DSM 15470] gi|260404214|gb|EEW97761.1| ATP-dependent protease, Lon family [Dialister invisus DSM 15470] Length = 638 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 86/328 (26%), Positives = 129/328 (39%), Gaps = 74/328 (22%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77 +++++P TL E GQ +A L A+K + H++ GPPG+GKTT A++V E Sbjct: 170 MNVVKPGTLSEIVGQNDAVKAL-----ASKIASPYPQHLILYGPPGVGKTTAARLVLEEA 224 Query: 78 ---------------------LGVNFRSTSGPVIAKAGD---------LA---------A 98 L + R + P+I D LA Sbjct: 225 KKTAWSAFGENAPFVECDGTTLRWDSRDITNPLIGSVHDPIYQGAQRELADDGIPEPKPG 284 Query: 99 LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED----FQLDLMVGEGPSARSVKINLSR- 153 L+T+ +LFIDEI L I+ L +ED F+ E P + L R Sbjct: 285 LVTDAHG-GILFIDEIGELDPILLNKLLKVLEDKRVPFESAYYDEENPYVPAYIKKLFRD 343 Query: 154 -----FTLIAATTRVGLLTNP-----LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203 F LI ATTR NP + F P+R ED++TIV+ A+ +++ Sbjct: 344 GAPADFILIGATTREPQEINPAIRSRCAEVFFEPLRP-----EDVETIVKNAAEKLKVSL 398 Query: 204 TD---EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI----ADAALLRLAID 256 D E E M R + V A A I+REI A + L ++ Sbjct: 399 EDGVAEMISEYTMEGRKAVNLLADAYSLVVYEAGGAGKNFISREIMRRTARGSRLTVSHH 458 Query: 257 KMGFDQLDLRYLTMIA-RNFGGGPVGIE 283 KM D ++ ++ + F G + IE Sbjct: 459 KMASDVPEVGHVFGLGVSGFSGSTIEIE 486 >gi|300770508|ref|ZP_07080387.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33861] gi|300762984|gb|EFK59801.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33861] Length = 439 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 16/143 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR + + GQ V A + + ++ GPPG+GKTTLA ++A+ L Sbjct: 24 MRPRNIVGYVGQEHIVGEGAVLRNALEQNN--IPSMILWGPPGVGKTTLALLMAKALDRP 81 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S S VI KA L +++ +LFIDEIHR S ++ L A+E Sbjct: 82 FFSLSAIQSGVKDIREVIEKADQLQKF---NQEQPILFIDEIHRFSKSQQDSLLGAVERG 138 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 139 LVTLIGATTENPSFEVISALLSR 161 >gi|227431371|ref|ZP_03913423.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352881|gb|EEJ43055.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 428 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 5/111 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +EE GQ K+ A L ++ GPPG GKT++A +A Sbjct: 10 MRPTKIEEIVGQQHLVGEGKIIWRMVAAHR--LSSMILYGPPGTGKTSIASAIAGSSKYA 67 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + ++ DL ++ + VL +DEIHRL+ I ++ L P +E Sbjct: 68 FRMLNAATDSQK-DLQIVVEEAKMSGTVVLLLDEIHRLNKIKQDFLLPHLE 117 >gi|149190994|ref|ZP_01869255.1| hypothetical protein VSAK1_00065 [Vibrio shilonii AK1] gi|148835128|gb|EDL52104.1| hypothetical protein VSAK1_00065 [Vibrio shilonii AK1] Length = 452 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 17/151 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +E++ GQ L+ +EA + L ++ GPPG GKTTLA+V A Sbjct: 21 MRPENVEQYIGQQHILGVGKPLRRALEAGQ-----LHSMILWGPPGTGKTTLAEVAANYA 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 S V + D+ A + + R +LF+DE+HR + ++ P +ED Sbjct: 76 DAEVERVSA-VTSGVKDIRAAIERARENKLAGKRTILFVDEVHRFNKSQQDAFLPHIEDG 134 Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATT 161 + + E PS LSR + T+ Sbjct: 135 TVTFIGATTENPSFELNNALLSRARVYKLTS 165 >gi|227538998|ref|ZP_03969047.1| recombination ATPase [Sphingobacterium spiritivorum ATCC 33300] gi|227241201|gb|EEI91216.1| recombination ATPase [Sphingobacterium spiritivorum ATCC 33300] Length = 439 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 16/143 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR + + GQ V A + + ++ GPPG+GKTTLA ++A+ L Sbjct: 24 MRPRNIVGYVGQEHIVGEGAVLRNALEQNN--IPSMILWGPPGVGKTTLALLMAKALDRP 81 Query: 82 FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S S VI KA L +++ +LFIDEIHR S ++ L A+E Sbjct: 82 FFSLSAIQSGVKDIREVIEKADQLQKF---NQEQPILFIDEIHRFSKSQQDSLLGAVERG 138 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 139 LVTLIGATTENPSFEVISALLSR 161 >gi|187736155|ref|YP_001878267.1| ATPase AAA [Akkermansia muciniphila ATCC BAA-835] gi|187426207|gb|ACD05486.1| AAA ATPase central domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 463 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP LE+ GQ L++ ++ K + + GPPG GKTTLA+++A Sbjct: 26 LRPSALEDIMGQDHLLGEGGPLRLMADSGK-----MTSFILWGPPGCGKTTLARILATRT 80 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 ++F + S + KA D AA +LF+DEIHR + ++ P +E+ Sbjct: 81 SMHFAALSAVFSGMADLRKAFDEAARRREYGHGTLLFVDEIHRFNRAQQDGFLPYVENGT 140 Query: 134 LDLM--VGEGPSARSVKINLSR 153 + L+ E PS LSR Sbjct: 141 VTLVGATTENPSFELNSALLSR 162 >gi|322377488|ref|ZP_08051979.1| ATPase, AAA family [Streptococcus sp. M334] gi|321281688|gb|EFX58697.1| ATPase, AAA family [Streptococcus sp. M334] Length = 423 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGQGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|325526164|gb|EGD03808.1| recombination factor protein RarA [Burkholderia sp. TJI49] Length = 251 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 113/257 (43%), Gaps = 38/257 (14%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L++ GQ A L+ E+ K + ++F GPPG+GKTTLA++ A+ Sbjct: 17 LRPASLDDVIGQTHLLGAGMPLRRAFESGKPHS-----MIFWGPPGVGKTTLARLTAQAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+ D+ A + R ++F+DEIHR + + L P++ Sbjct: 72 DCAFVALSA-VLGGVKDIRAATARAQQAFDGAGRRTIVFVDEIHRFNDTQQAALLPSVAS 130 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + + +G S ++N + + + +V +L + LN E+ L Sbjct: 131 GAV-IFIGATTENPSFEVN----SALLSRAQVYVLQS-----------LNDDEMRQLLRR 174 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 Q A L GLA D+A + + G R LL + + A A TI + +A+ Sbjct: 175 AQEIA-LDGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAAASAGVTTIDADFVSSAMT 233 Query: 252 RLA--IDKMG---FDQL 263 A DK G +DQ+ Sbjct: 234 LNARRFDKGGDNFYDQI 250 >gi|56963348|ref|YP_175079.1| recombination factor protein RarA [Bacillus clausii KSM-K16] gi|56909591|dbj|BAD64118.1| AAA family ATPase [Bacillus clausii KSM-K16] Length = 420 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++EE GQ + KA L ++ GPPG GKT++A+ +A G++ Sbjct: 10 MRPTSVEEVIGQHSLLGEGMMLSRMIKA--NQLSSMVLYGPPGTGKTSIARAIAGSSGMH 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V K + A + +L +DE+HRL ++ L P +E L L++G Sbjct: 68 FRMLNATVHHKKDMETAVEEAKMYGSLLLILDEVHRLDKAKQDFLLPHLESGLL-LLIG 125 >gi|332993165|gb|AEF03220.1| recombination factor protein RarA [Alteromonas sp. SN2] Length = 444 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 13/117 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP T++E+ GQ L+ +EA + ++ GPPG GKTTLA+++A Sbjct: 19 MRPVTIDEYAGQSHLLGTNKPLRKMLEAGHCHS-----MILWGPPGTGKTTLAELIATYT 73 Query: 79 GVNF----RSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + TSG I A D A + R +LF+DE+HR + ++ P +E Sbjct: 74 NASVIRISAVTSGVKDIRAAMDAAKENSRYNQRTLLFVDEVHRFNKSQQDAFLPFVE 130 >gi|30913228|sp|O74111|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication factor C3; AltName: Full=Activator 1 subunit 3 gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans] Length = 338 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP TL+E G + +K F+E K L H+LF GPPG GKTT VAR++ G N Sbjct: 24 RPTTLDEVAGHEGVITTIKKFVEEGK-----LPHLLFHGPPGTGKTTTIIAVARQIYGKN 78 Query: 82 FRS 84 +R+ Sbjct: 79 YRN 81 >gi|307710680|ref|ZP_07647109.1| ATPase family associated with various cellular activities (AAA) family protein [Streptococcus mitis SK321] gi|307617451|gb|EFN96622.1| ATPase family associated with various cellular activities (AAA) family protein [Streptococcus mitis SK321] Length = 404 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGQGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLII 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|288958714|ref|YP_003449055.1| ATPase [Azospirillum sp. B510] gi|288911022|dbj|BAI72511.1| ATPase [Azospirillum sp. B510] Length = 439 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPRTL+E GQ AR L ++ GPPG GKTT+A+++A ++ Sbjct: 26 LRPRTLDEVVGQDHLLKPDGPLGRMVAARR--LASMILWGPPGCGKTTIARLLAHSTDLH 83 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S V + DL + R +LFIDEIHR + ++ P +ED + Sbjct: 84 FEPLSA-VFSGVADLRKVFDAARARRAAGQGTLLFIDEIHRFNRSQQDGFLPFVEDGTVT 142 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 143 LVGATTENPS 152 >gi|269967796|ref|ZP_06181843.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269827616|gb|EEZ81903.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 449 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+E++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPETIEQYIGQQHILGLGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S AA+ E+ R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138 Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165 >gi|312132192|ref|YP_003999532.1| aaa atpase central domain protein [Leadbetterella byssophila DSM 17132] gi|311908738|gb|ADQ19179.1| AAA ATPase central domain protein [Leadbetterella byssophila DSM 17132] Length = 422 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 7/136 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR L+E+ GQ K +A ++ L ++ GPPG+GKT+LA ++A Sbjct: 11 IRPRNLDEYVGQEHILGPGKPLRKAIESGM--LPSMILWGPPGVGKTSLAFLIAEVSKRQ 68 Query: 82 FRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137 F + S + A DL +L +LFIDEIHR + ++ L A+E ++ L+ Sbjct: 69 FHNLSA-ISAGVKDLREVLARPSGLFPPILFIDEIHRFNKSQQDALLGAVEKGKVTLIGA 127 Query: 138 VGEGPSARSVKINLSR 153 E PS LSR Sbjct: 128 TTENPSFEVNSALLSR 143 >gi|307728952|ref|YP_003906176.1| AAA ATPase central domain-containing protein [Burkholderia sp. CCGE1003] gi|307583487|gb|ADN56885.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1003] Length = 437 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 115/261 (44%), Gaps = 48/261 (18%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR ++E GQ L+V E+ +A + ++ GPPG+GKTTLA+++A Sbjct: 15 LRPRNIDEVIGQKHLLGPNKPLRVAFESGQAHS-----MILWGPPGVGKTTLARLMADAF 69 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S + I +A + A + + ++F+DE+HR + ++ P +E Sbjct: 70 HAQFIALSAVLSGVKDIREAVETAQVHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 128 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L + VG S ++N + + A L + ++L+ ++ Sbjct: 129 LFVFVGATTENPSFEVNSALLSRAAVYV------------------LKSLDEDELRELLA 170 Query: 194 RGA-KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R +L GL TDEA + + G R +LL + A A + T EI D ALL Sbjct: 171 RAQHELGGLTFTDEARDALIGSADGDGR---KLLNNLEIVARAASQQKTT-EI-DGALLG 225 Query: 253 LAI-------DKMG---FDQL 263 A+ DK G +DQ+ Sbjct: 226 SALAENLRRFDKGGDAFYDQI 246 >gi|238784518|ref|ZP_04628526.1| Replication-associated recombination protein A [Yersinia bercovieri ATCC 43970] gi|238714581|gb|EEQ06585.1| Replication-associated recombination protein A [Yersinia bercovieri ATCC 43970] Length = 444 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+++ GQ + K A A L ++ GPPG GKTTLA+++ R + Sbjct: 17 MRPLTLDQYIGQQHLLAAGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 75 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134 Query: 137 M--VGEGPS 143 + E PS Sbjct: 135 IGATTENPS 143 >gi|119503243|ref|ZP_01625327.1| hypothetical protein MGP2080_11283 [marine gamma proteobacterium HTCC2080] gi|119460889|gb|EAW41980.1| hypothetical protein MGP2080_11283 [marine gamma proteobacterium HTCC2080] Length = 444 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 17/145 (11%) Query: 20 SLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S LRP +L F GQ + L + +EA L L GPPG+GKTTLA++ A Sbjct: 21 SRLRPSSLASFVGQEHILGPDAPLAMALEAGN-----LHSFLLWGPPGVGKTTLARLCAG 75 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F S V++ ++ ++ + R VLF+DE+HR + ++ P +E Sbjct: 76 TAKAQFYPISA-VLSGVKEIRQVIESARVGLSQGLRTVLFVDEVHRFNKAQQDAFLPHVE 134 Query: 131 DFQLDLM--VGEGPSARSVKINLSR 153 D + + E PS LSR Sbjct: 135 DGTITFIGATTENPSFEVNAALLSR 159 >gi|56807432|ref|ZP_00365394.1| COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [Streptococcus pyogenes M49 591] Length = 353 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|320100774|ref|YP_004176366.1| replication factor C large subunit [Desulfurococcus mucosus DSM 2162] gi|319753126|gb|ADV64884.1| replication factor C large subunit [Desulfurococcus mucosus DSM 2162] Length = 425 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 32/60 (53%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPRTLEEF Q EA L ++E+ + L GPPG GKT+L + VAR G Sbjct: 13 RPRTLEEFEDQEEAKEKLIAWLESWEKGVPGKKAALLHGPPGCGKTSLVEAVARSKGYQL 72 >gi|326318084|ref|YP_004235756.1| Holliday junction DNA helicase RuvB domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374920|gb|ADX47189.1| Holliday junction DNA helicase RuvB domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 147 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 15/113 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L+E GQ L++ E+ K + ++F GPPG+GKTTLA++ A Sbjct: 17 LRPASLDEVIGQSHLLGEGKPLRLAFESGKPHS-----MIFWGPPGVGKTTLARLTATAF 71 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEIL 125 F + S V + D+ A + + +LF+DEIHR + V + Sbjct: 72 ECEFIALSA-VFSGVKDIRAAMDQAQHNLAMGKHTILFVDEIHRFNKAVNHFI 123 >gi|221213645|ref|ZP_03586619.1| ATPase, AAA family [Burkholderia multivorans CGD1] gi|221166434|gb|EED98906.1| ATPase, AAA family [Burkholderia multivorans CGD1] Length = 436 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 14/118 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL + GQ L++ E+ K + ++ GPPG+GKTTLA++ A Sbjct: 17 LRPKTLGDVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130 F + S + I +A D A N R +LF+DEIHR + ++ L P +E Sbjct: 72 DCEFIALSAVLGGVKDIREAMDQAKETLNRTGRHTILFVDEIHRFNKGQQDALLPFVE 129 >gi|168486363|ref|ZP_02710871.1| ATPase, AAA family [Streptococcus pneumoniae CDC1087-00] gi|183570586|gb|EDT91114.1| ATPase, AAA family [Streptococcus pneumoniae CDC1087-00] Length = 423 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEANC--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|50121569|ref|YP_050736.1| recombination factor protein RarA [Pectobacterium atrosepticum SCRI1043] gi|49612095|emb|CAG75545.1| putative ATPase [Pectobacterium atrosepticum SCRI1043] Length = 447 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL ++ GQ A L IEA + L ++ GPPG GKTTLA+++ Sbjct: 20 MRPATLAQYIGQQHLLGAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGHYG 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A N R +LF+DE+HR + ++ P +ED Sbjct: 75 QADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|323525162|ref|YP_004227315.1| MgsA AAA+ ATPase-like protein [Burkholderia sp. CCGE1001] gi|323382164|gb|ADX54255.1| MgsA AAA+ ATPase-like protein [Burkholderia sp. CCGE1001] Length = 437 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 116/261 (44%), Gaps = 48/261 (18%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR ++E GQ L+V E+ +A + ++ GPPG+GKTTLA+++A Sbjct: 15 LRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHS-----MILWGPPGVGKTTLARLMADAF 69 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S + I +A + A + + ++F+DE+HR + ++ P +E Sbjct: 70 HAQFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 128 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L + +G S ++N + + A L + ++L+ +++ Sbjct: 129 LFVFIGATTENPSFEVNSALLSRAAVYV------------------LKSLDEDELRELLE 170 Query: 194 RGA-KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 R +L GL TDEA + + G R +LL + A A + T EI D ALL Sbjct: 171 RAQHELGGLTFTDEARDALIGSADGDGR---KLLNNLEIVARAASQQKKT-EI-DGALLG 225 Query: 253 LAI-------DKMG---FDQL 263 A+ DK G +DQ+ Sbjct: 226 SALAENLRRFDKGGDAFYDQI 246 >gi|118086471|ref|XP_001232269.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform 1 [Gallus gallus] Length = 537 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 19/110 (17%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 LRP TL ++ GQ + A + L+ +E+ + + ++ GPPG GKTTLA ++A Sbjct: 127 LRPDTLRDYVGQERVLGAHTLLRSLLESHE-----IPSLILWGPPGCGKTTLAHIIANSS 181 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118 ++ G+ F + S AK D+ +++ ++ + +LFIDEIHR + Sbjct: 182 KKKGMRFVTLSA-TSAKTNDVRDVISQAQNEKRLFKRKTILFIDEIHRFN 230 >gi|119194249|ref|XP_001247728.1| hypothetical protein CIMG_01499 [Coccidioides immitis RS] Length = 535 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPRTL+E GQ N L+ IEA + + ++ G G GKTT+A+V+A +G Sbjct: 129 MRPRTLDEVCGQELVGQNGVLRGLIEADR-----VPSMILWGGAGTGKTTIARVIATMVG 183 Query: 80 VNF---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F STS V A L + ++F DEIHR S +++ +E Q Sbjct: 184 SRFVEINSTSSGVAECKKIFAEARNELRLAGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 243 Query: 134 LDLM--VGEGPSARSVKINLSR---FTL 156 + L+ E PS + LSR FTL Sbjct: 244 VTLIGATTENPSFKVQNALLSRCRTFTL 271 >gi|168066656|ref|XP_001785250.1| predicted protein [Physcomitrella patens subsp. patens] gi|162663155|gb|EDQ49936.1| predicted protein [Physcomitrella patens subsp. patens] Length = 498 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLED 105 A +L ++F GPPG GKT+L Q +AR + F + S + + + A L + Sbjct: 111 ANSLSSIIFWGPPGTGKTSLVQTIARAVSYRFVALSAVSSGLKEVRETLEEAKRLQKFGE 170 Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLI 157 R +L +DEIHR + ++ P +E + +++G S +IN LSR ++ Sbjct: 171 RTLLLLDEIHRFNKAQLDVFLPCVEAGHI-VLIGATTENPSFEINAALLSRCKVL 224 >gi|332526025|ref|ZP_08402163.1| recombination factor protein RarA [Rubrivivax benzoatilyticus JA2] gi|332109868|gb|EGJ10496.1| recombination factor protein RarA [Rubrivivax benzoatilyticus JA2] Length = 447 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 17/146 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL E GQ L+V E+ + + ++ GPPG+GKTTLA++VA + Sbjct: 32 LRPHTLAEVIGQQHLLGPGRPLRVAFESGR-----IPSMILWGPPGVGKTTLARLVAGSV 86 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED- 131 F S V+A D+ + +D V+F+DE+HR + ++ P +E Sbjct: 87 DAQFLVLSA-VLAGVKDIRDAVELAKDARRRGQATVVFVDEVHRFNKAQQDAFLPHVESG 145 Query: 132 -FQLDLMVGEGPSARSVKINLSRFTL 156 F E PS LSR T+ Sbjct: 146 LFTFIGATTENPSFEVNSALLSRATV 171 >gi|116328835|ref|YP_798555.1| recombination factor protein RarA [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331744|ref|YP_801462.1| recombination factor protein RarA [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121579|gb|ABJ79622.1| Holliday junction resolvase helicase subunit-like ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125433|gb|ABJ76704.1| Holliday junction resolvase helicase subunit-like ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 423 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 13/140 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP EE GQ A L + ++ GPPG GK+TLA ++ R+ + Sbjct: 17 IRPSGFEEVIGQTRATKQLVNYRSPVS--------IILYGPPGTGKSTLAGILCRKWNLP 68 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137 F + V ++ LL E +LF+DEIHR S ++ L +E L L+ Sbjct: 69 FVEYNA-VSTGVSEIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETGHLVLIGA 127 Query: 138 VGEGPSARSVKINLSRFTLI 157 E P+ R + LSR ++ Sbjct: 128 TTENPAFRITRPLLSRCQIL 147 >gi|28210750|ref|NP_781694.1| recombination factor protein RarA [Clostridium tetani E88] gi|28203188|gb|AAO35631.1| ATPase associated with chromosome architecture/replication [Clostridium tetani E88] Length = 427 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ K+ +E L +++F GPPG GKTT+A ++A Sbjct: 10 IRPKILDEVFGQKHILGQGKILRRII--NSEKLTNMIFYGPPGTGKTTVANIIANRTNKT 67 Query: 82 FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 + A D+ ++ +L+ + VL++DEI + ++ L ME Q+ L Sbjct: 68 LYKLNA-TNASLADIKNIIADLDSFMGVEGVVLYLDEIQNFNKKQQQSLLEFMEKGQITL 126 Query: 137 MVG--EGPSARSVKINLSRFTL 156 + E P K LSR T+ Sbjct: 127 IASTTENPYHYIYKAILSRATI 148 >gi|269139542|ref|YP_003296243.1| putative DNA recombination-associated ATPase RarA [Edwardsiella tarda EIB202] gi|267985203|gb|ACY85032.1| putative DNA recombination-associated ATPase RarA [Edwardsiella tarda EIB202] gi|304559431|gb|ADM42095.1| AAA family ATPase [Edwardsiella tarda FL6-60] Length = 447 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR----E 77 +RP LE++ GQ + K A A L ++ GPPG GKTTLA+++AR E Sbjct: 20 MRPTALEQYIGQRHLLAAGKPLPRAILA--GHLHSMILWGPPGTGKTTLAELIARYGHAE 77 Query: 78 LGVNFRSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 + TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGIKEIREAIERARHNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|254294413|ref|YP_003060436.1| recombination factor protein RarA [Hirschia baltica ATCC 49814] gi|254042944|gb|ACT59739.1| AAA ATPase central domain protein [Hirschia baltica ATCC 49814] Length = 440 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 17/132 (12%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 L N Q AD LRP+TL + GQ + A + + + L ++ GPPG Sbjct: 10 LDDNAPQPLAD--RLRPKTLSDVIGQDHLIGADGPIGRMLANKR-----LASMILWGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLS 118 +GKTT+AQ++A G+ F S + + DL A E R +LF+DEIHR + Sbjct: 63 VGKTTIAQLLAAGAGLEFDPISA-IFSGVKDLRAAFDRAEKRRQIGKGTLLFVDEIHRFN 121 Query: 119 IIVEEILYPAME 130 ++ P +E Sbjct: 122 KAQQDGFLPFVE 133 >gi|229525720|ref|ZP_04415125.1| ATPase AAA family [Vibrio cholerae bv. albensis VL426] gi|229339301|gb|EEO04318.1| ATPase AAA family [Vibrio cholerae bv. albensis VL426] Length = 449 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T++++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVDQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|319945709|ref|ZP_08019960.1| AAA family ATPase [Streptococcus australis ATCC 700641] gi|319748069|gb|EFW00312.1| AAA family ATPase [Streptococcus australis ATCC 700641] Length = 423 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGEGKIIRRMVEANR--LSSMILFGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM 639] gi|73914011|sp|Q4JAB0|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639] Length = 325 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP++L+E Q E LK F+ + + + H+LF GPPG GKTT A + R+L G N Sbjct: 12 RPKSLDEIVNQKEIVERLKKFV-----KEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66 Query: 82 FRS 84 +R Sbjct: 67 YRQ 69 >gi|238795840|ref|ZP_04639353.1| Replication-associated recombination protein A [Yersinia mollaretii ATCC 43969] gi|238720303|gb|EEQ12106.1| Replication-associated recombination protein A [Yersinia mollaretii ATCC 43969] Length = 444 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+++ GQ + K A A L ++ GPPG GKTTLA+++ R + Sbjct: 17 MRPLTLDQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 75 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134 Query: 137 M--VGEGPS 143 + E PS Sbjct: 135 IGATTENPS 143 >gi|300214751|gb|ADJ79167.1| ATPase, AAA family [Lactobacillus salivarius CECT 5713] Length = 423 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +++ GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 8 MRPKNIDDVVGQQHLVGPGKIIRRMVEAKL--LSSMILYGPPGTGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + +L +DEIHRL+ ++ L P +ED + +++G Sbjct: 66 FRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIHRLTKPKQDFLLPHLEDGHI-ILIGA 124 Query: 141 GPSARSVKIN 150 + IN Sbjct: 125 TTENPYISIN 134 >gi|303311419|ref|XP_003065721.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|240105383|gb|EER23576.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|320039584|gb|EFW21518.1| AAA family ATPase [Coccidioides posadasii str. Silveira] Length = 535 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPRTL+E GQ N L+ IEA + + ++ G G GKTT+A+V+A +G Sbjct: 129 MRPRTLDEVCGQELVGQNGVLRGLIEADR-----VPSMILWGGAGTGKTTIARVIATMVG 183 Query: 80 VNF---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F STS V A L + ++F DEIHR S +++ +E Q Sbjct: 184 SRFVEINSTSSGVAECKKIFAEARNELRLAGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 243 Query: 134 LDLM--VGEGPSARSVKINLSR---FTL 156 + L+ E PS + LSR FTL Sbjct: 244 VTLIGATTENPSFKVQNALLSRCRTFTL 271 >gi|239637567|ref|ZP_04678539.1| recombination factor protein RarA [Staphylococcus warneri L37603] gi|239596785|gb|EEQ79310.1| recombination factor protein RarA [Staphylococcus warneri L37603] Length = 423 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 17/172 (9%) Query: 54 LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFI 111 L ++F GPPG+GKT++A+ +A FR + V D+ ++ + + +L + Sbjct: 40 LSSMIFYGPPGIGKTSIAKAIAGSTQYKFRQLNA-VTNTKKDMQMVVDEAKMSGQVILLL 98 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT-NPL 170 DEIHRL ++ L P +E+ ++ +++G S IN A +R + PL Sbjct: 99 DEIHRLDKAKQDFLLPHLENGKI-VLIGATTSNPYHAIN------PAIRSRAQIFELYPL 151 Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 D I + LN +D QRG K V D+A + +S+G R A Sbjct: 152 YDN-DIRLALNRALEDD-----QRGLKSYTPEVDDDAMTYFSTQSQGDVRSA 197 >gi|301300882|ref|ZP_07207054.1| recombination factor protein RarA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851481|gb|EFK79193.1| recombination factor protein RarA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 423 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +++ GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 8 MRPKNIDDVVGQQHLVGPGKIIRRMVEAKL--LSSMILYGPPGTGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + +L +DEIHRL+ ++ L P +ED + +++G Sbjct: 66 FRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIHRLTKPKQDFLLPHLEDGHI-ILIGA 124 Query: 141 GPSARSVKIN 150 + IN Sbjct: 125 TTENPYISIN 134 >gi|291245127|ref|XP_002742444.1| PREDICTED: Werner helicase interacting protein-like [Saccoglossus kowalevskii] Length = 633 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 28/169 (16%) Query: 11 NVSQEDADISLL----RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPP 63 N ++ AD + L RP +L+++ GQ + + L+ IEA + ++ GPP Sbjct: 194 NAEKKSADFAPLAEKMRPSSLDDYVGQDKVIGTNTMLRSLIEA-----NDVPSMILWGPP 248 Query: 64 GLGKTTLAQVVARELGVNFR--------STSGPVIAKAGDLAALLTN----LEDRDVLFI 111 G GKTTLA++VA N S + +++ ++ + N + + +LFI Sbjct: 249 GCGKTTLARIVASNAKKNSNSRLRFVQLSATTSNVSEVREVIKIAQNEQTMFKRKTILFI 308 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLI 157 DEIHR + + ++ +E+ + L +G S ++N LSR ++ Sbjct: 309 DEIHRFNKLQQDTFLMHIENGTITL-IGATTQNPSFQVNSALLSRCKVV 356 >gi|153802127|ref|ZP_01956713.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|124122320|gb|EAY41063.1| conserved hypothetical protein [Vibrio cholerae MZO-3] Length = 449 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T++++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTVDQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|300716072|ref|YP_003740875.1| polynucleotide ATPase [Erwinia billingiae Eb661] gi|299061908|emb|CAX59024.1| Putative polynucleotide ATPase protein [Erwinia billingiae Eb661] Length = 447 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L E+ GQ + A L IEA L ++ GPPG GKTTLA+++ R Sbjct: 20 MRPAMLAEYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEIIGRYG 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + TSG I +A + A + R +LF+DE+HR + ++ P +ED Sbjct: 75 QADVERISAVTSGVKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 Query: 134 LDLM--VGEGPS 143 + + E PS Sbjct: 135 ITFIGATTENPS 146 >gi|297526853|ref|YP_003668877.1| ATPase associated with various cellular activities AAA_3 [Staphylothermus hellenicus DSM 12710] gi|297255769|gb|ADI31978.1| ATPase associated with various cellular activities AAA_3 [Staphylothermus hellenicus DSM 12710] Length = 312 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 37/209 (17%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLED--------- 105 H+L GPPG+GKTT+A++ ++ +G FR P + + L +++ Sbjct: 39 HILIEGPPGVGKTTVAKLFSQAIGGVFRRVQMTPDLLPSDILGTYFYDMKKGEWVLRKGP 98 Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 +VLF+DE++R + L AM++ Q+ + EG + K F ++A V Sbjct: 99 VFSNVLFVDELNRAPPRTQSALLEAMQEKQVSI---EGTTFSLPK----PFLVVATQMPV 151 Query: 164 GL-----LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218 G LT L DRF RL++ L+ V+ G L+ + + DEA + + + Sbjct: 152 GSEGTYPLTPVLIDRFAYSCRLSY-----LEPSVEMGL-LSRIDIIDEARIDSIL----S 201 Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIAD 247 PR G + + VR + A +I + I D Sbjct: 202 PRDIGEMQKMVRG---IHVAPSIRKYIVD 227 >gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Thermoproteus neutrophilus V24Sta] gi|170935661|gb|ACB40922.1| Replication factor C [Thermoproteus neutrophilus V24Sta] Length = 328 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 6/65 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPR+ +E E S L+ F+ R+ + H+LF GPPG GKTT+A V+AREL G Sbjct: 11 RPRSFDEVVDLEEVKSRLREFV-----RSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65 Query: 82 FRSTS 86 +R + Sbjct: 66 WRENT 70 >gi|90962054|ref|YP_535970.1| recombination factor protein RarA [Lactobacillus salivarius UCC118] gi|90821248|gb|ABD99887.1| ATPase, AAA family [Lactobacillus salivarius UCC118] Length = 423 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +++ GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 8 MRPKNIDDVVGQQHLVGPGKIIRRMVEAKL--LSSMILYGPPGTGKTSIASAIAGSTKYA 65 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + +L +DEIHRL+ ++ L P +ED + +++G Sbjct: 66 FRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIHRLTKPKQDFLLPHLEDGHI-ILIGA 124 Query: 141 GPSARSVKIN 150 + IN Sbjct: 125 TTENPYISIN 134 >gi|239814294|ref|YP_002943204.1| recombination factor protein RarA [Variovorax paradoxus S110] gi|239800871|gb|ACS17938.1| AAA ATPase central domain protein [Variovorax paradoxus S110] Length = 430 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 104/255 (40%), Gaps = 53/255 (20%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E GQ L++ E+ + + + GPPG GKTT+A+++A Sbjct: 13 LRPKTLGEVIGQQHLLGPGMPLRIAFESGQPHS-----CILWGPPGTGKTTIARLMADAF 67 Query: 79 GVNFRSTSGPVIAKAGDL-------AALLTNLED-RDVLFIDEIHRLSIIVEEILYPAME 130 F S S V+ D+ A LE R ++F+DE+HR + ++ P +E Sbjct: 68 DAQFLSISA-VLGGVKDIRDAVERATAARDGLEQRRTIVFVDEVHRFNKSQQDAFLPHVE 126 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIE--- 186 FT I ATT NP + + R Y ++ Sbjct: 127 S--------------------GLFTFIGATTE-----NPSFEVNSALLSRAAVYVLQPLT 161 Query: 187 --DLKTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 DLK IV + + + + D A + + G R RLL + A A A+ + Sbjct: 162 EADLKQIVAKAQAIQAVPGIEDTAIDRLVAYADGDAR---RLLNTLETLAVAARAEKLG- 217 Query: 244 EIADAALLRLAIDKM 258 I D LLR+ ++M Sbjct: 218 HITDEWLLRVLGERM 232 >gi|255710491|ref|XP_002551529.1| KLTH0A01540p [Lachancea thermotolerans] gi|238932906|emb|CAR21087.1| KLTH0A01540p [Lachancea thermotolerans] Length = 328 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 6/67 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP+TL++ GQ E ++ F++ + L H+LF GPPG GKT++ ++RE+ Sbjct: 11 IEKYRPQTLDDVYGQREIVGTVRKFVKEGR-----LPHLLFYGPPGTGKTSMIVALSREI 65 Query: 79 -GVNFRS 84 G N+R+ Sbjct: 66 YGTNYRN 72 >gi|187923044|ref|YP_001894686.1| recombination factor protein RarA [Burkholderia phytofirmans PsJN] gi|187714238|gb|ACD15462.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN] Length = 437 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 114/260 (43%), Gaps = 46/260 (17%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR ++E GQ L+V E+ +A + ++ GPPG+GKTTLA+++A Sbjct: 15 LRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHS-----MILWGPPGVGKTTLARLMADAF 69 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S + I +A + A + + ++F+DE+HR + ++ P +E Sbjct: 70 HAEFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 128 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L + VG S ++N + L R + + + + E + + + Sbjct: 129 LFVFVGATTENPSFEVN-----------------SALLSRAAVYVLKSLTDDEQRELLER 171 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 +L GL TDEA + + G R +LL + A A + T EI D ALL Sbjct: 172 AQQELGGLTFTDEARDALIGSADGDGR---KLLNNLEIVARAASQQKTT-EI-DGALLGS 226 Query: 254 AI-------DKMG---FDQL 263 A+ DK G +DQ+ Sbjct: 227 ALAENLRRFDKGGDAFYDQI 246 >gi|310800419|gb|EFQ35312.1| ATPase [Glomerella graminicola M1.001] Length = 566 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 22/150 (14%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPRTL+E GQ V + L+ IE+ + + ++ G G GKTT+A+ +A+ +G Sbjct: 155 MRPRTLDEVCGQDLVGSHGVLRSLIESDR-----VPSMILWGGSGTGKTTIARCIAQSVG 209 Query: 80 VNF----RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F ++SG +A+ L A N + ++F DEIHR S +++ +E Sbjct: 210 SRFIEMNATSSG--VAECKKLFAEAANELALTGRKTIIFCDEIHRFSKSQQDVFLKPVEA 267 Query: 132 FQLDLM--VGEGPSARSVKINLSR---FTL 156 + L+ E PS R + LSR FTL Sbjct: 268 GTITLIGATTENPSFRVQQALLSRCRTFTL 297 >gi|213648825|ref|ZP_03378878.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 414 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 54 LDHVLFVGPPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDV 108 L ++ GPPG GKTTLA+V+AR + TSG I +A + A N R + Sbjct: 17 LHSMILWGPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTI 76 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPS 143 LF+DE+HR + ++ P +ED + + E PS Sbjct: 77 LFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPS 113 >gi|50915051|ref|YP_061023.1| recombination factor protein RarA [Streptococcus pyogenes MGAS10394] gi|50904125|gb|AAT87840.1| ATPase, AAA family [Streptococcus pyogenes MGAS10394] Length = 422 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ E GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATIDSKKRLQEITEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|224476725|ref|YP_002634331.1| recombination factor protein RarA [Staphylococcus carnosus subsp. carnosus TM300] gi|222421332|emb|CAL28146.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 426 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ L+E Q + ++ L ++F GPPG+GKT++A+ +A Sbjct: 8 SRMRPQNLDEIISQQHLVGPKGIIRRMVDSKR--LTSMIFYGPPGIGKTSIAKAIAGSTQ 65 Query: 80 VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + V D+ ++ + + +L +DEIHRL ++ L P +E+ ++ ++ Sbjct: 66 FKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123 Query: 138 VGEGPSARSVKIN 150 +G S IN Sbjct: 124 IGATTSNPYHAIN 136 >gi|115938214|ref|XP_795793.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115967858|ref|XP_001182557.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 672 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 20/151 (13%) Query: 22 LRPRTLEEFTGQVEA---CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP T++ GQ +A L+ ++ + ++F GPPG GKT+LA V+AR+ Sbjct: 276 MRPYTMDTLIGQNKALGATGTLRRLLDVGN-----IPSMIFWGPPGCGKTSLANVIARQA 330 Query: 79 GV-------NFRSTSGPV--IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPA 128 V F +T+ V + A ++A + R +LFIDEIHR + ++ Sbjct: 331 KVRNTHRFITFSATTSNVSDVKSAVEIARNEQRMYRRKTILFIDEIHRFNKTQQDTFLLH 390 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E+ + L+ E PS R LSR ++ Sbjct: 391 VENGTIILIGATTENPSFRVNSALLSRCRVV 421 >gi|302807036|ref|XP_002985249.1| hypothetical protein SELMODRAFT_121732 [Selaginella moellendorffii] gi|300147077|gb|EFJ13743.1| hypothetical protein SELMODRAFT_121732 [Selaginella moellendorffii] Length = 503 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 21/179 (11%) Query: 7 LLSRNVSQEDADISL-----LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVL 58 LS V+++++ ++ +RP ++ + GQ LK +E ++L V+ Sbjct: 77 FLSTKVAKKNSKAAVPLAERMRPTSVNDILGQDHLLGPRGILKSLLEG-----DSLASVI 131 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112 F GPPG GKTTLA+ +A + F + S V + ++ +L + R +LF+D Sbjct: 132 FWGPPGTGKTTLARAIASTVSYRFVALSA-VTSGVKEVREVLEEAKKAKKYGQRTLLFLD 190 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171 E+HR + ++ P +E + + VG S +IN + + T LL L+ Sbjct: 191 EVHRFNKAQQDAFLPYVEAGHV-VFVGATTENPSFEINAALLSRCKVLTMNKLLPEHLE 248 >gi|271967375|ref|YP_003341571.1| recombination factor protein RarA [Streptosporangium roseum DSM 43021] gi|270510550|gb|ACZ88828.1| recombination factor protein RarA [Streptosporangium roseum DSM 43021] Length = 436 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 14/119 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RPR L+E GQ + + L+ +EA EA + GPPG GKTTLA VVA Sbjct: 23 MRPRGLDEVIGQRHLLGPGTPLRRLVEA-----EAPMSLFLWGPPGTGKTTLAYVVAGVT 77 Query: 76 --RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131 R + V+ S + A + A + R VLF+DE+HR + ++ L PA+E+ Sbjct: 78 KRRFVEVSAVSAGVKEVRAAIEQARRELGMSGRQTVLFVDEVHRFNKAQQDALLPAVEN 136 >gi|32475212|ref|NP_868206.1| recombination factor protein RarA [Rhodopirellula baltica SH 1] gi|32445753|emb|CAD78484.1| conserved hypothetical protein-putative a helicase [Rhodopirellula baltica SH 1] Length = 439 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 113/262 (43%), Gaps = 43/262 (16%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIE-AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP+ L EF GQ K+ A R + +L GPPG GKTTLA ++A E Sbjct: 22 MRPKKLSEFVGQQHILGEGKLLRRLIASGR---VGSILLHGPPGTGKTTLAHLIASEQNS 78 Query: 81 NFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 + +SG V+AKA D ++ + R +LFIDEIHR + ++ L +E Sbjct: 79 ELITLNAISSGVKDVREVLAKARD---RVSAGDPRPLLFIDEIHRFNKSQQDALLADVES 135 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 + L +G S +N + LI+ + GL P+ +ED++++ Sbjct: 136 GIISL-IGATTSNPYFAVNAA---LISRSQLFGL--EPVS-------------VEDMRSL 176 Query: 192 VQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 ++R G + + ++A ++ S G R A L E A + Sbjct: 177 LKRAITDRECGLGNQNVTIDEDAIDYLSSASDGDARKALTALEVAVHSHENPKASITRDD 236 Query: 245 IADAALLRLA-IDKMGFDQLDL 265 +A++ R+A D G D DL Sbjct: 237 VAESMTSRIAGYDATGDDHYDL 258 >gi|294672830|ref|YP_003573446.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella ruminicola 23] gi|294473076|gb|ADE82465.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella ruminicola 23] Length = 737 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 4/77 (5%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPP 63 ++ N ++A + L PR L++ GQ EA + ++ +KA + L +LFVGP Sbjct: 431 MAMNSDDDNAQLETLAPRLLQKIYGQDEAIRQVVEAVQMSKAGLLDDNKPLASLLFVGPT 490 Query: 64 GLGKTTLAQVVARELGV 80 G+GKT +A+V+A+ELG+ Sbjct: 491 GVGKTEVARVLAKELGI 507 >gi|227891074|ref|ZP_04008879.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius ATCC 11741] gi|227866948|gb|EEJ74369.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius ATCC 11741] Length = 416 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +++ GQ K+ +A+ L ++ GPPG GKT++A +A Sbjct: 1 MRPKNIDDVVGQQHLVGPGKIIRRMVEAKL--LSSMILYGPPGTGKTSIASAIAGSTKYA 58 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + +L +DEIHRL+ ++ L P +ED + +++G Sbjct: 59 FRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIHRLTKPKQDFLLPHLEDGHI-ILIGA 117 Query: 141 GPSARSVKIN 150 + IN Sbjct: 118 TTENPYISIN 127 >gi|171778879|ref|ZP_02919941.1| hypothetical protein STRINF_00800 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282525|gb|EDT47949.1| hypothetical protein STRINF_00800 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 422 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKV---FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+ +++ GQ K+ +EA K L ++ GPPG+GKT++A +A Sbjct: 9 MRPKNIDQVIGQKHLVGEGKIIRRMVEANK-----LSSMILYGPPGIGKTSIASAIAGTT 63 Query: 79 GVNFRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + +K + A L VL +DEIHRL ++ L P +E+ Sbjct: 64 KYAFRTFNATTDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGN 119 Query: 134 LDLMVG 139 + +M+G Sbjct: 120 I-IMIG 124 >gi|87200560|ref|YP_497817.1| recombination factor protein RarA [Novosphingobium aromaticivorans DSM 12444] gi|87136241|gb|ABD26983.1| Recombination protein MgsA [Novosphingobium aromaticivorans DSM 12444] Length = 452 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPR L E GQ + + A K L ++ GPPG GKT++A+++A + Sbjct: 39 LRPRDLSEIIGQDHLTGPDGAIGRMVAAGK-----LTSMILWGPPGTGKTSIARLLAEAV 93 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ + + S V + DL E R +LF+DEIHR + ++ P +E+ Sbjct: 94 GMRYVAISA-VFSGVADLKKAFAEAEAMALAGRRTLLFVDEIHRFNRAQQDGFLPFVENG 152 Query: 133 QLDLM--VGEGPS 143 + L+ E PS Sbjct: 153 TVTLVGATTENPS 165 >gi|332306867|ref|YP_004434718.1| AAA ATPase central domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174196|gb|AEE23450.1| AAA ATPase central domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 445 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 12/131 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ + ++ GQ K + +A R + +L+ GPPG GKTTLA+++A + Sbjct: 22 MRPQNIAQYFGQQHIVGEGKP-LRSAIERGQCHSMILW-GPPGTGKTTLAEIIAMHCDAH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 S V + D+ + + + R +LF+DE+HR + ++ P +ED + Sbjct: 80 IERISA-VTSGVKDIRSAIEQAKQNALSQAKRTILFVDEVHRFNKSQQDAFLPFIEDGTI 138 Query: 135 DLM--VGEGPS 143 + E PS Sbjct: 139 TFIGATTENPS 149 >gi|323303302|gb|EGA57098.1| Rfc3p [Saccharomyces cerevisiae FostersB] Length = 340 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 6/67 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP TL+E GQ E + ++ F++ K L H+LF GPPG GKT+ +ARE+ Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREI 70 Query: 79 -GVNFRS 84 G N+ + Sbjct: 71 YGKNYSN 77 >gi|81428450|ref|YP_395450.1| recombination factor protein RarA [Lactobacillus sakei subsp. sakei 23K] gi|78610092|emb|CAI55141.1| Putative DNA-replication helicase [Lactobacillus sakei subsp. sakei 23K] Length = 426 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 70/181 (38%), Gaps = 34/181 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ A+ L ++ GPPG GKT++A +A Sbjct: 9 MRPTNIDEIVGQTHLVGPQKIIRRMVDAKL--LSSMILYGPPGTGKTSIASAIAGSTQYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K + A + +L +DEIHRL ++ L P +E Sbjct: 67 FRMLNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLES--------- 117 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLT-NPLQDRFGIPIRLNFYEIE-----DLKTIVQR 194 R LI ATT +T NP I R +E+ D+ +QR Sbjct: 118 -----------GRIVLIGATTENPYITINP-----AIRSRTQIFEVHPLNEADIHVAIQR 161 Query: 195 G 195 Sbjct: 162 A 162 >gi|50513623|pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 340 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 6/67 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP TL+E GQ E + ++ F++ K L H+LF GPPG GKT+ +ARE+ Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREI 70 Query: 79 -GVNFRS 84 G N+ + Sbjct: 71 YGKNYSN 77 >gi|313207354|ref|YP_004046531.1| AAA ATPase central domain protein [Riemerella anatipestifer DSM 15868] gi|312446670|gb|ADQ83025.1| AAA ATPase central domain protein [Riemerella anatipestifer DSM 15868] gi|315023249|gb|EFT36259.1| ATPase, AAA family protein [Riemerella anatipestifer RA-YM] gi|325335187|gb|ADZ11461.1| the helicase subunit-like protein of the Holliday junction resolvase [Riemerella anatipestifer RA-GD] Length = 425 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E GQ ++ ++ + L+ ++ GPPG GKTTLA++++ + Sbjct: 11 LRPKTLDEMLGQEHLTGKDGTIRKMLDTDR-----LNSLILWGPPGTGKTTLAEILSEQS 65 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 G F S V + ++ ++ + + + +LFIDEIHR + ++ L A+E Sbjct: 66 GRKFFKLSA-VSSGVKEVREVIDDAKKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEK 124 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS V LSR Sbjct: 125 GWVILIGATTENPSFEVVSALLSR 148 >gi|306832634|ref|ZP_07465773.1| AAA family ATPase [Streptococcus bovis ATCC 700338] gi|304425242|gb|EFM28369.1| AAA family ATPase [Streptococcus bovis ATCC 700338] Length = 422 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +++ GQ + K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKNIDQVIGQKHLVGDGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATTDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|151944257|gb|EDN62536.1| replication factor C subunit 3 [Saccharomyces cerevisiae YJM789] gi|190409258|gb|EDV12523.1| replication factor C subunit 3 [Saccharomyces cerevisiae RM11-1a] gi|256271294|gb|EEU06366.1| Rfc3p [Saccharomyces cerevisiae JAY291] gi|259149079|emb|CAY82321.1| Rfc3p [Saccharomyces cerevisiae EC1118] gi|323331837|gb|EGA73249.1| Rfc3p [Saccharomyces cerevisiae AWRI796] gi|323335982|gb|EGA77259.1| Rfc3p [Saccharomyces cerevisiae Vin13] gi|323346957|gb|EGA81235.1| Rfc3p [Saccharomyces cerevisiae Lalvin QA23] gi|323352828|gb|EGA85130.1| Rfc3p [Saccharomyces cerevisiae VL3] Length = 340 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 6/67 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP TL+E GQ E + ++ F++ K L H+LF GPPG GKT+ +ARE+ Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREI 70 Query: 79 -GVNFRS 84 G N+ + Sbjct: 71 YGKNYSN 77 >gi|6324039|ref|NP_014109.1| Rfc3p [Saccharomyces cerevisiae S288c] gi|585844|sp|P38629|RFC3_YEAST RecName: Full=Replication factor C subunit 3; Short=Replication factor C3; AltName: Full=Activator 1 40 kDa subunit gi|439118|gb|AAA34969.1| replication factor C [Saccharomyces cerevisiae] gi|841466|gb|AAC49062.1| Rfc3p [Saccharomyces cerevisiae] gi|1050872|gb|AAC49110.1| replication factor C, 40 kDa subunit [Saccharomyces cerevisiae] gi|1302375|emb|CAA96207.1| RFC3 [Saccharomyces cerevisiae] gi|285814375|tpg|DAA10269.1| TPA: Rfc3p [Saccharomyces cerevisiae S288c] Length = 340 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 6/67 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP TL+E GQ E + ++ F++ K L H+LF GPPG GKT+ +ARE+ Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREI 70 Query: 79 -GVNFRS 84 G N+ + Sbjct: 71 YGKNYSN 77 >gi|301114403|ref|XP_002998971.1| replication factor C subunit 5 [Phytophthora infestans T30-4] gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4] Length = 353 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 7/82 (8%) Query: 5 EGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 EG+ SRN S E + RP +L++ E S L I+A K L H+LF GPP Sbjct: 16 EGISSRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQK-----LPHLLFYGPP 70 Query: 64 GLGKTTLAQVVAREL-GVNFRS 84 G GKT++ AR L G N+ S Sbjct: 71 GTGKTSMIIAAARRLYGKNYGS 92 >gi|219115131|ref|XP_002178361.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410096|gb|EEC50026.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 685 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT +A+ +A E G NF S GP + A G A + NL D+ + Sbjct: 441 VLFYGPPGCGKTLMAKAIANECGANFISVKGPELLNAWFGGSEANVRNLFDKARAASPCI 500 Query: 109 LFIDEI 114 LF DE+ Sbjct: 501 LFFDEM 506 >gi|213052480|ref|ZP_03345358.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 354 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 54 LDHVLFVGPPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDV 108 L ++ GPPG GKTTLA+V+AR + TSG I +A + A N R + Sbjct: 3 LHSMILWGPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTI 62 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPS 143 LF+DE+HR + ++ P +ED + + E PS Sbjct: 63 LFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPS 99 >gi|291534006|emb|CBL07119.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Megamonas hypermegale ART12/1] Length = 372 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 37/225 (16%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVL 109 ++ GPPG GKTTLA+++A F S V A D+ ++ ++ R ++ Sbjct: 1 MILYGPPGTGKTTLAKMIAGMTKSEF-SRLNAVSAGISDVRKIIEKADENRRYYRKRTII 59 Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVG---EGP-----SARSVKINLSRFTLIAATT 161 F+DEIHR + +++L P +ED ++ +++G E P A ++ + + L+ Sbjct: 60 FLDEIHRFNKAQQDVLLPYVEDGRI-ILIGATTENPYFEVNHALLSRVRVVKLELLDEQN 118 Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221 + +L L+D+ RG DE IA + G R+ Sbjct: 119 LIDILKVALEDKV-------------------RGLGKYEFKYDDEVLSIIAQYAGGDARV 159 Query: 222 AGRLLRRVRDFA-EVAHAKTITREIADAALLRLAIDKMGFDQLDL 265 A +L +V D A E H + + DK G + D+ Sbjct: 160 ALNILEQVGDVALEQNHNINKEIIESIISEKIQTYDKNGDNHYDI 204 >gi|295688943|ref|YP_003592636.1| AAA ATPase central domain-containing protein [Caulobacter segnis ATCC 21756] gi|295430846|gb|ADG10018.1| AAA ATPase central domain protein [Caulobacter segnis ATCC 21756] Length = 433 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP++L+E GQ A A L ++ GPPG GKTT+A+++A+ G Sbjct: 22 LRPQSLDEVVGQQHLLGPEGPI--GRMAAAHRLASMILWGPPGTGKTTIARLLAKAGGYE 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131 F+ S V + DL R +LF+DEIHR + ++ P +E+ Sbjct: 80 FQQISA-VFSGVADLKKAFEQARARRMAGQSTLLFVDEIHRFNRAQQDGFLPFVEE 134 >gi|320536106|ref|ZP_08036159.1| DNA polymerase III, subunit gamma and tau [Treponema phagedenis F0421] gi|320147023|gb|EFW38586.1| DNA polymerase III, subunit gamma and tau [Treponema phagedenis F0421] Length = 589 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 98/231 (42%), Gaps = 31/231 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+ E+ GQ + L+ I+A K + H LF GP G GKT+ A+++A+ L Sbjct: 11 RPQRFEDLLGQDFVAATLQKSIQAGK-----IAHAYLFSGPRGCGKTSSARILAKALNCE 65 Query: 82 FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQL 134 SGP G A +T DV+ ID S+ I +EIL+P Sbjct: 66 ----SGPAPTPCGTCTACTEITAGSSLDVIEIDGASNTSVNDMRQIKDEILFPPNASRYK 121 Query: 135 DLMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNF--Y 183 ++ E + N T+ I ATT + + ++ R + NF Sbjct: 122 IYIIDEVHMLSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSRCQ---QFNFKLV 178 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 +E LK + + A +G+ DEA IA + G+ R A L ++ F++ Sbjct: 179 SVEQLKEALAQAAMESGIQADDEALYWIANEATGSVRDAYTLFDQIVAFSD 229 >gi|306824709|ref|ZP_07458053.1| AAA family ATPase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432920|gb|EFM35892.1| AAA family ATPase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 429 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 15 MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 72 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 73 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-ALVI 127 Query: 137 MVG 139 M+G Sbjct: 128 MIG 130 >gi|261253433|ref|ZP_05946006.1| ATPase AAA family [Vibrio orientalis CIP 102891] gi|260936824|gb|EEX92813.1| ATPase AAA family [Vibrio orientalis CIP 102891] Length = 428 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 1 MRPETLDQYIGQQHILGVGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 58 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 59 VERVSA-VTSGVKEIRAAIERARENKLAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 117 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 118 FIGATTENPSFELNNALLSRARVYKLTS 145 >gi|296087560|emb|CBI34149.3| unnamed protein product [Vitis vinifera] Length = 397 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 41/173 (23%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+++ GQ S+ + A + L ++ GPPG GKT++A+ + VN Sbjct: 1 MRPRTVDDVVGQDHLLSHKSLLRSAIDS--NRLPSIILWGPPGTGKTSIAKAI-----VN 53 Query: 82 FRSTSGPVIAKAGDLAALLTNLED--------------------RDVLFIDEIHRLSIIV 121 S+S P + L+A+ ++D R +LF+DE+HR + Sbjct: 54 --SSSQPSSYRFVSLSAVTAGVKDVRDVVEEARKIKVSKNMNSKRTLLFVDEVHRFNKSQ 111 Query: 122 EEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171 ++ P +ED + + +G E PS + LSR RV L NPLQ Sbjct: 112 QDSFLPVIEDGSI-VFIGATTENPSFHLITPLLSR-------CRV-LTLNPLQ 155 >gi|260819040|ref|XP_002604690.1| hypothetical protein BRAFLDRAFT_228800 [Branchiostoma floridae] gi|229290018|gb|EEN60701.1| hypothetical protein BRAFLDRAFT_228800 [Branchiostoma floridae] Length = 449 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 20/151 (13%) Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L+ + GQ +A S L++ +EA + ++ GPPG GKTT+AQ++A+ Sbjct: 21 VRPTCLDLYVGQTKALGAGSMLRLLVEA-----HDIPSMVLWGPPGCGKTTMAQIIAKNA 75 Query: 79 GVN----FRSTSGPV--IAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPA 128 + F + S + + + D+ + N + +LFIDEIHR + ++ P Sbjct: 76 KQHQNSRFVALSATMSGVDEVRDVIKVAKNEQTMFRRKTILFIDEIHRFNKKQQDTFLPH 135 Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS LSR +I Sbjct: 136 VESGTIVLIGATTENPSFSLNSALLSRCRVI 166 >gi|314936259|ref|ZP_07843606.1| ATPase, AAA family [Staphylococcus hominis subsp. hominis C80] gi|313654878|gb|EFS18623.1| ATPase, AAA family [Staphylococcus hominis subsp. hominis C80] Length = 422 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 12/136 (8%) Query: 20 SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S +RP + E Q ++ IE K L ++F GPPG+GKT++A+ +A Sbjct: 8 SRMRPTNINEIISQQHLVGPRGIIRRMIETKK-----LSSMIFYGPPGIGKTSIAKAIAG 62 Query: 77 ELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 FR + V D+ ++ + + +L +DEIHRL ++ L P +E+ ++ Sbjct: 63 STEYKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI 121 Query: 135 DLMVGEGPSARSVKIN 150 +++G S IN Sbjct: 122 -ILIGATTSNPYHAIN 136 >gi|315613661|ref|ZP_07888568.1| AAA family ATPase [Streptococcus sanguinis ATCC 49296] gi|315314352|gb|EFU62397.1| AAA family ATPase [Streptococcus sanguinis ATCC 49296] Length = 429 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 15 MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 72 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 73 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 127 Query: 137 MVG 139 M+G Sbjct: 128 MIG 130 >gi|56479430|ref|YP_161019.1| recombination factor protein RarA [Aromatoleum aromaticum EbN1] gi|56315473|emb|CAI10118.1| predicted ATPase related to the uncharacterized helicase subunit of the holliday junction resolvase [Aromatoleum aromaticum EbN1] Length = 446 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL E GQ + L++ E+ K L ++ GPPG+GKTTLA+++A+ Sbjct: 19 MRPTTLAEVAGQRHLLGPGKPLRLAFESGK-----LHSMILWGPPGVGKTTLARLMAQAF 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132 F + S V + D+ + + + +LF+DE+HR + ++ P +E Sbjct: 74 DAEFIALSA-VFSGVKDIREAVAHAQTEKARGRHTILFVDEVHRFNKAQQDAFLPYVEQG 132 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS LSR Sbjct: 133 VVTLIGATTENPSFEVNSALLSR 155 >gi|225464722|ref|XP_002264062.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 534 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 41/173 (23%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPRT+++ GQ S+ + A + L ++ GPPG GKT++A+ + VN Sbjct: 113 MRPRTVDDVVGQDHLLSHKSLLRSAIDS--NRLPSIILWGPPGTGKTSIAKAI-----VN 165 Query: 82 FRSTSGPVIAKAGDLAALLTNLED--------------------RDVLFIDEIHRLSIIV 121 S+S P + L+A+ ++D R +LF+DE+HR + Sbjct: 166 --SSSQPSSYRFVSLSAVTAGVKDVRDVVEEARKIKVSKNMNSKRTLLFVDEVHRFNKSQ 223 Query: 122 EEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171 ++ P +ED + + +G E PS + LSR RV L NPLQ Sbjct: 224 QDSFLPVIEDGSI-VFIGATTENPSFHLITPLLSR-------CRV-LTLNPLQ 267 >gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM 4184] gi|150415670|sp|A1RSA2|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small subunit 1; AltName: Full=Clamp loader small subunit 1 gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM 4184] Length = 329 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR+ +E E S L+ F+++ + H+LF GPPG GKTT+A V+AREL Sbjct: 11 RPRSFDEVVDLEEVKSRLREFVKSGN-----MPHLLFYGPPGTGKTTMALVLAREL 61 >gi|27468227|ref|NP_764864.1| recombination factor protein RarA [Staphylococcus epidermidis ATCC 12228] gi|293366416|ref|ZP_06613094.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)] gi|27315773|gb|AAO04908.1|AE016748_142 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|291319450|gb|EFE59818.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)] Length = 426 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 7/143 (4%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 +NVS E S +RP+ ++E Q + + L ++F GPPG+GKT+ Sbjct: 2 KNVSTEPL-ASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKR--LSSMIFYGPPGIGKTS 58 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYP 127 +A+ ++ FR + V D+ ++ + + +L +DEIHRL ++ L P Sbjct: 59 IAKAISGSTQFKFRQLNA-VTNTKKDMQLIVEEAKMSGQVILLLDEIHRLDKAKQDFLLP 117 Query: 128 AMEDFQLDLMVGEGPSARSVKIN 150 +E+ ++ +++G S IN Sbjct: 118 HLENGKI-VLIGATTSNPYHAIN 139 >gi|307705464|ref|ZP_07642319.1| ATPase family associated with various cellular activities (AAA) family protein [Streptococcus mitis SK597] gi|307620999|gb|EFO00081.1| ATPase family associated with various cellular activities (AAA) family protein [Streptococcus mitis SK597] Length = 423 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303] gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303] Length = 318 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 88/222 (39%), Gaps = 37/222 (16%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ I RP L++ GQ EA LK +I L H+LF GPPG+GKT A Sbjct: 2 KEEIWIEKYRPFKLDDIVGQGEAIKRLKSYISTNN-----LPHLLFSGPPGVGKTAAAVA 56 Query: 74 VAREL-----GVNFRSTSGP-------VIAKAGDLAALL-TNLEDRDVLFIDEIHRLSII 120 +A+EL NF + V K D + D ++F+DE L+ Sbjct: 57 IAKELFGDAWHQNFTELNASDERGIDVVRTKIKDFSKTSPIGGADFKIIFLDEADALTPD 116 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 + L ME + N RF L + + P+Q R + R Sbjct: 117 AQSALRRTMERY----------------TNNCRFIL--SCNYSSKIIEPIQSRCAV-YRF 157 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 E ++ V+ A+ GL ++++ I S+G R A Sbjct: 158 RSLSYEAVEKRVRYIAEQEGLQISEDGVEAIKYVSQGDMRKA 199 >gi|207341952|gb|EDZ69867.1| YNL290Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 181 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 6/65 (9%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP TL+E GQ E + ++ F++ K L H+LF GPPG GKT+ +ARE+ Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREI 70 Query: 79 -GVNF 82 G N+ Sbjct: 71 YGKNY 75 >gi|309799324|ref|ZP_07693570.1| chromosome segregation helicase [Streptococcus infantis SK1302] gi|308117064|gb|EFO54494.1| chromosome segregation helicase [Streptococcus infantis SK1302] Length = 429 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 15 MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 72 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 73 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 127 Query: 137 MVG 139 M+G Sbjct: 128 MIG 130 >gi|126137263|ref|XP_001385155.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054] gi|126092377|gb|ABN67126.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054] Length = 322 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP TL+E GQ E +K F A L H+LF GPPG GKT+ +ARE+ G N Sbjct: 7 RPSTLDEVYGQEEIVQTVKKF-----AHENRLPHLLFYGPPGTGKTSTIIALAREIYGTN 61 Query: 82 FRS 84 +++ Sbjct: 62 YKN 64 >gi|307709674|ref|ZP_07646126.1| ATPase family associated with various cellular activities (AAA) family protein [Streptococcus mitis SK564] gi|307619572|gb|EFN98696.1| ATPase family associated with various cellular activities (AAA) family protein [Streptococcus mitis SK564] Length = 423 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|331265869|ref|YP_004325499.1| chromosome segregation helicase, ATPase, AAA family [Streptococcus oralis Uo5] gi|326682541|emb|CBZ00158.1| chromosome segregation helicase, ATPase, AAA family [Streptococcus oralis Uo5] Length = 423 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|293365951|ref|ZP_06612654.1| AAA family ATPase [Streptococcus oralis ATCC 35037] gi|291315629|gb|EFE56079.1| AAA family ATPase [Streptococcus oralis ATCC 35037] Length = 429 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 15 MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 72 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 73 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 127 Query: 137 MVG 139 M+G Sbjct: 128 MIG 130 >gi|20090661|ref|NP_616736.1| replication factor C large subunit [Methanosarcina acetivorans C2A] gi|42559496|sp|Q8TPU4|RFCL_METAC RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|19915708|gb|AAM05216.1| replication factor C, large subunit [Methanosarcina acetivorans C2A] Length = 607 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR------ 76 RPRTLE+ G +A + + + E ++R V+ GP G+GKT+ A +AR Sbjct: 17 RPRTLEDVVGNKKAVRDFRAWAEEWQSRIPETRAVILYGPAGIGKTSSAHALARDMDWDV 76 Query: 77 -ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113 EL + + T+G + AG A++ T + ++ +DE Sbjct: 77 IELNASDQRTAGVIEKIAGSAASMNTLFGSKRLIILDE 114 >gi|237649836|ref|ZP_04524088.1| recombination factor protein RarA [Streptococcus pneumoniae CCRI 1974] gi|237820763|ref|ZP_04596608.1| recombination factor protein RarA [Streptococcus pneumoniae CCRI 1974M2] gi|301794760|emb|CBW37213.1| putative ATPase [Streptococcus pneumoniae INV104] Length = 423 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|228987651|ref|ZP_04147765.1| hypothetical protein bthur0001_43210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772111|gb|EEM20563.1| hypothetical protein bthur0001_43210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 428 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 84/330 (25%), Positives = 127/330 (38%), Gaps = 65/330 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K +A ++ GPPG GKT++A +A G Sbjct: 9 MRPTNIQEIIGQQHLVGEEKFLWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + V D+ ++ + VL +DE+HRL ++ L P +E L Sbjct: 67 FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189 TLI ATT +NP I R +E+ ED LK Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160 Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244 ++ K G + VT EA A S G R A L + F A IT E Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220 Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 A+ L + + DK G D+ L+ ++ G V A+ L Sbjct: 221 TAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265 Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 +I+ G +Q GR L+ +A++ +G+ P Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292 >gi|317131450|ref|YP_004090764.1| AAA ATPase central domain protein [Ethanoligenens harbinense YUAN-3] gi|315469429|gb|ADU26033.1| AAA ATPase central domain protein [Ethanoligenens harbinense YUAN-3] Length = 423 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 16/146 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+E GQ + L+ +E + + +++F GP G+GKTT+A ++A++ Sbjct: 8 LRPKTLDEVVGQRHLLAPDMLLRRVVETGQ-----IPNLIFYGPSGVGKTTVASILAKQA 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133 G +G ++ A D+ A++ L+ +L++DEI L+ ++ L +ED + Sbjct: 63 GKTLHRLNGTNMSTA-DIKAIVGELDTFAGMGGVLLYLDEIQYLNKKQQQSLLEFIEDGR 121 Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E P LSR T+ Sbjct: 122 ITLIASTTENPYFYIYNAILSRCTVF 147 >gi|148989581|ref|ZP_01820913.1| ATPase, AAA family protein [Streptococcus pneumoniae SP6-BS73] gi|149020859|ref|ZP_01835388.1| ATPase, AAA family protein [Streptococcus pneumoniae SP23-BS72] gi|168483316|ref|ZP_02708268.1| ATPase, AAA family [Streptococcus pneumoniae CDC1873-00] gi|168488503|ref|ZP_02712702.1| ATPase, AAA family [Streptococcus pneumoniae SP195] gi|147924898|gb|EDK75980.1| ATPase, AAA family protein [Streptococcus pneumoniae SP6-BS73] gi|147930500|gb|EDK81483.1| ATPase, AAA family protein [Streptococcus pneumoniae SP23-BS72] gi|172043264|gb|EDT51310.1| ATPase, AAA family [Streptococcus pneumoniae CDC1873-00] gi|183572715|gb|EDT93243.1| ATPase, AAA family [Streptococcus pneumoniae SP195] gi|332072610|gb|EGI83093.1| AAA ATPase, central region [Streptococcus pneumoniae GA17570] Length = 423 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|148995370|ref|ZP_01824100.1| ATPase, AAA family protein [Streptococcus pneumoniae SP9-BS68] gi|148997835|ref|ZP_01825399.1| ATPase, AAA family protein [Streptococcus pneumoniae SP11-BS70] gi|168491890|ref|ZP_02716033.1| ATPase, AAA family [Streptococcus pneumoniae CDC0288-04] gi|168575029|ref|ZP_02720992.1| ATPase, AAA family [Streptococcus pneumoniae MLV-016] gi|307068401|ref|YP_003877367.1| ATPase [Streptococcus pneumoniae AP200] gi|147756334|gb|EDK63376.1| ATPase, AAA family protein [Streptococcus pneumoniae SP11-BS70] gi|147926761|gb|EDK77823.1| ATPase, AAA family protein [Streptococcus pneumoniae SP9-BS68] gi|183573935|gb|EDT94463.1| ATPase, AAA family [Streptococcus pneumoniae CDC0288-04] gi|183578824|gb|EDT99352.1| ATPase, AAA family [Streptococcus pneumoniae MLV-016] gi|306409938|gb|ADM85365.1| ATPase [Streptococcus pneumoniae AP200] gi|332199801|gb|EGJ13876.1| AAA ATPase, central region [Streptococcus pneumoniae GA41317] Length = 423 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|329850245|ref|ZP_08265090.1| ATPase family associated with various cellular activities AAA family protein [Asticcacaulis biprosthecum C19] gi|328840560|gb|EGF90131.1| ATPase family associated with various cellular activities AAA family protein [Asticcacaulis biprosthecum C19] Length = 448 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 13/117 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ + E GQ + A +R A L ++ GPPG+GKTT+A+++A Sbjct: 31 LRPKNVAEVVGQDHLLGP-----DGAISRLIARGFLPSLILWGPPGVGKTTIARLLAEAA 85 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 G F+ S + KA + A + R VLF+DEIHR + ++ P +E Sbjct: 86 GYEFQQISAVFSGVADLKKAFEQAQQRHQMGQRTVLFVDEIHRFNRAQQDSFLPFVE 142 >gi|303254696|ref|ZP_07340798.1| recombination factor protein RarA [Streptococcus pneumoniae BS455] gi|303258731|ref|ZP_07344711.1| recombination factor protein RarA [Streptococcus pneumoniae SP-BS293] gi|303261895|ref|ZP_07347841.1| recombination factor protein RarA [Streptococcus pneumoniae SP14-BS292] gi|303263757|ref|ZP_07349679.1| recombination factor protein RarA [Streptococcus pneumoniae BS397] gi|303265708|ref|ZP_07351607.1| recombination factor protein RarA [Streptococcus pneumoniae BS457] gi|303268589|ref|ZP_07354381.1| recombination factor protein RarA [Streptococcus pneumoniae BS458] gi|301802487|emb|CBW35245.1| putative ATPase [Streptococcus pneumoniae INV200] gi|302598408|gb|EFL65452.1| recombination factor protein RarA [Streptococcus pneumoniae BS455] gi|302636978|gb|EFL67467.1| recombination factor protein RarA [Streptococcus pneumoniae SP14-BS292] gi|302640232|gb|EFL70687.1| recombination factor protein RarA [Streptococcus pneumoniae SP-BS293] gi|302641868|gb|EFL72223.1| recombination factor protein RarA [Streptococcus pneumoniae BS458] gi|302644835|gb|EFL75083.1| recombination factor protein RarA [Streptococcus pneumoniae BS457] gi|302646795|gb|EFL77020.1| recombination factor protein RarA [Streptococcus pneumoniae BS397] Length = 423 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|323455706|gb|EGB11574.1| hypothetical protein AURANDRAFT_550 [Aureococcus anophagefferens] Length = 725 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LAQ VA E G NF S GP + G+ A + NL ++ + Sbjct: 495 VLFYGPPGCGKTLLAQAVAHECGANFISIKGPELLTMWFGESEANVRNLFEKARASAPCI 554 Query: 109 LFIDEIHRLS 118 LF DEI ++ Sbjct: 555 LFFDEIDAIA 564 >gi|307702352|ref|ZP_07639310.1| ATPase family associated with various cellular activities (AAA) family protein [Streptococcus oralis ATCC 35037] gi|307624155|gb|EFO03134.1| ATPase family associated with various cellular activities (AAA) family protein [Streptococcus oralis ATCC 35037] Length = 423 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|225861597|ref|YP_002743106.1| recombination factor protein RarA [Streptococcus pneumoniae Taiwan19F-14] gi|298255511|ref|ZP_06979097.1| recombination factor protein RarA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503523|ref|YP_003725463.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae TCH8431/19A] gi|225728091|gb|ACO23942.1| ATPase, AAA family [Streptococcus pneumoniae Taiwan19F-14] gi|298239118|gb|ADI70249.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae TCH8431/19A] gi|327389962|gb|EGE88307.1| AAA ATPase, central region [Streptococcus pneumoniae GA04375] Length = 423 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|15901619|ref|NP_346223.1| recombination factor protein RarA [Streptococcus pneumoniae TIGR4] gi|111656850|ref|ZP_01407692.1| hypothetical protein SpneT_02001892 [Streptococcus pneumoniae TIGR4] gi|149011349|ref|ZP_01832596.1| ATPase, AAA family protein [Streptococcus pneumoniae SP19-BS75] gi|225855223|ref|YP_002736735.1| recombination factor protein RarA [Streptococcus pneumoniae JJA] gi|14973288|gb|AAK75863.1| ATPase, AAA family [Streptococcus pneumoniae TIGR4] gi|147764339|gb|EDK71270.1| ATPase, AAA family protein [Streptococcus pneumoniae SP19-BS75] gi|225724070|gb|ACO19923.1| ATPase, AAA family [Streptococcus pneumoniae JJA] Length = 423 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|256391570|ref|YP_003113134.1| recombination factor protein RarA [Catenulispora acidiphila DSM 44928] gi|256357796|gb|ACU71293.1| AAA ATPase central domain protein [Catenulispora acidiphila DSM 44928] Length = 463 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 12/126 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR L E GQ + A S L +E +L GPPG GKTTLA V+A Sbjct: 25 MRPRVLGEIVGQKHLLRAGSPLWRLVETGDG-VTVPSSILLWGPPGTGKTTLAYVLANAT 83 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131 F S + A ++ A++ + +LF+DEIHR S ++ L PA+E+ Sbjct: 84 ERTFAELSA-INAGVKEVRAVVERAKRELGMYGRETLLFLDEIHRFSKAQQDSLLPAVEN 142 Query: 132 FQLDLM 137 + L+ Sbjct: 143 RWVTLV 148 >gi|322375733|ref|ZP_08050245.1| ATPase, AAA family [Streptococcus sp. C300] gi|321279441|gb|EFX56482.1| ATPase, AAA family [Streptococcus sp. C300] Length = 423 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|15903658|ref|NP_359208.1| recombination factor protein RarA [Streptococcus pneumoniae R6] gi|116516731|ref|YP_817033.1| recombination factor protein RarA [Streptococcus pneumoniae D39] gi|149002087|ref|ZP_01827041.1| ATPase, AAA family protein [Streptococcus pneumoniae SP14-BS69] gi|221232531|ref|YP_002511684.1| ATPase [Streptococcus pneumoniae ATCC 700669] gi|15459285|gb|AAL00419.1| Chromosome segregation helicase [Streptococcus pneumoniae R6] gi|116077307|gb|ABJ55027.1| ATPase, AAA family protein [Streptococcus pneumoniae D39] gi|147759896|gb|EDK66886.1| ATPase, AAA family protein [Streptococcus pneumoniae SP14-BS69] gi|220674992|emb|CAR69569.1| putative ATPase [Streptococcus pneumoniae ATCC 700669] gi|332074143|gb|EGI84621.1| AAA ATPase, central region [Streptococcus pneumoniae GA41301] gi|332201201|gb|EGJ15272.1| AAA ATPase, central region [Streptococcus pneumoniae GA47901] Length = 423 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|194397127|ref|YP_002038384.1| recombination factor protein RarA [Streptococcus pneumoniae G54] gi|225857384|ref|YP_002738895.1| recombination factor protein RarA [Streptococcus pneumoniae P1031] gi|194356794|gb|ACF55242.1| ATPase, AAA family [Streptococcus pneumoniae G54] gi|225725467|gb|ACO21319.1| ATPase, AAA family [Streptococcus pneumoniae P1031] Length = 423 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|327540333|gb|EGF26919.1| replication-associated recombination protein A [Rhodopirellula baltica WH47] Length = 439 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 47/264 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+ L EF GQ L+ I + + + +L GPPG GKTTLA ++A E Sbjct: 22 MRPKKLSEFVGQQHILGEGKLLRRLIASGR-----VGSILLHGPPGTGKTTLAHLIASEQ 76 Query: 79 GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 + +SG V+AKA D ++ + R +LFIDEIHR + ++ L + Sbjct: 77 NSELITLNAISSGVKDVREVLAKARD---RVSAGDPRPLLFIDEIHRFNKSQQDALLADV 133 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 E + L +G S +N + LI+ + GL P+ +ED++ Sbjct: 134 ESGIISL-IGATTSNPYFAVNAA---LISRSQLFGL--EPVS-------------VEDMR 174 Query: 190 TIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 ++++R G + + ++A ++ S G R A L E A Sbjct: 175 SLLKRAITDRECGLGNQNVTIDEDAIDYLSSASDGDARKALTALEVAVHSHENPKASISR 234 Query: 243 REIADAALLRLA-IDKMGFDQLDL 265 ++A++ R+A D G D DL Sbjct: 235 DDVAESMTSRIAGYDATGDDHYDL 258 >gi|228475177|ref|ZP_04059903.1| recombination factor protein RarA [Staphylococcus hominis SK119] gi|228270788|gb|EEK12190.1| recombination factor protein RarA [Staphylococcus hominis SK119] Length = 422 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 12/136 (8%) Query: 20 SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S +RP + E Q ++ +E K L ++F GPPG+GKT++A+ +A Sbjct: 8 SRMRPTNINEIISQQHLVGPRGIIRRMVETKK-----LSSMIFYGPPGIGKTSIAKAIAG 62 Query: 77 ELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 FR + V D+ ++ + + +L +DEIHRL ++ L P +E+ ++ Sbjct: 63 STEYKFRQLNA-VTNTKKDMQMIVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI 121 Query: 135 DLMVGEGPSARSVKIN 150 +++G S IN Sbjct: 122 -ILIGATTSNPYHAIN 136 >gi|169833738|ref|YP_001695164.1| recombination factor protein RarA [Streptococcus pneumoniae Hungary19A-6] gi|168996240|gb|ACA36852.1| chromosome segregation helicase [Streptococcus pneumoniae Hungary19A-6] Length = 423 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str. IM2] gi|42559513|sp|Q8ZYK4|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small subunit 1; AltName: Full=Clamp loader small subunit 1 gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str. IM2] Length = 329 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 6/65 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPR+ +E E + L+ F++A + H+LF GPPG GKTT+A V+AREL G Sbjct: 11 RPRSFDEVVDLEEVKARLREFVKAGN-----MPHLLFYGPPGTGKTTMALVLARELYGEY 65 Query: 82 FRSTS 86 +R + Sbjct: 66 WRENT 70 >gi|332200340|gb|EGJ14413.1| AAA ATPase, central region [Streptococcus pneumoniae GA47368] Length = 423 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|322392660|ref|ZP_08066120.1| AAA family ATPase [Streptococcus peroris ATCC 700780] gi|321144652|gb|EFX40053.1| AAA family ATPase [Streptococcus peroris ATCC 700780] Length = 429 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 15 MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 72 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 73 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 127 Query: 137 MVG 139 M+G Sbjct: 128 MIG 130 >gi|270293098|ref|ZP_06199309.1| ATPase, AAA family [Streptococcus sp. M143] gi|270279077|gb|EFA24923.1| ATPase, AAA family [Streptococcus sp. M143] Length = 423 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|323307584|gb|EGA60853.1| Rfc3p [Saccharomyces cerevisiae FostersO] Length = 201 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 6/65 (9%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP TL+E GQ E + ++ F++ K L H+LF GPPG GKT+ +ARE+ Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREI 70 Query: 79 -GVNF 82 G N+ Sbjct: 71 YGKNY 75 >gi|258546040|ref|ZP_05706274.1| replication-associated recombination protein A [Cardiobacterium hominis ATCC 15826] gi|258518697|gb|EEV87556.1| replication-associated recombination protein A [Cardiobacterium hominis ATCC 15826] Length = 457 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 97/225 (43%), Gaps = 36/225 (16%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPP 63 L +RN AD LRP+TL ++ GQ + L V I K + +L GPP Sbjct: 24 LFTRNGDAPLAD--RLRPKTLADYIGQRHILGDGMPLAVAIAQKKPFS-----MLLWGPP 76 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRL 117 G GKTTLA ++A + S V + ++ + + + +LFIDEIHR Sbjct: 77 GCGKTTLALLLADAFDARYIRLSA-VFSGVKEVREAVAQAQQERAIGRKTILFIDEIHRF 135 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 + ++ P +ED L L+ G + + NL+ L + RV L PL + Sbjct: 136 NKAQQDAFLPYVEDGTLILI---GATTENPAFNLNNALL--SRLRVFHL-KPLSE----- 184 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 ++L ++RG GL + A +A ++ G R A Sbjct: 185 --------DELAEKLRRGLAALGLEADEPAIATLAYQAGGDARKA 221 >gi|149928209|ref|ZP_01916454.1| AAA ATPase, central region [Limnobacter sp. MED105] gi|149823100|gb|EDM82340.1| AAA ATPase, central region [Limnobacter sp. MED105] Length = 450 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 13/117 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL E GQ A L + E + + ++ GPPG+GKTTLA+++A Sbjct: 32 IRPSTLAEVVGQTHLLGAGKPLTLLFEQ-----QHVHSLILWGPPGVGKTTLARLLAGAA 86 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + S + I A D A+ +LFIDEIHR + ++ L P +E Sbjct: 87 KAQFIALSAVLSGVKEIRAAIDQASEYARAGKSTILFIDEIHRFNKSQQDALLPFVE 143 >gi|302382657|ref|YP_003818480.1| MgsA AAA+ ATPase-like protein [Brevundimonas subvibrioides ATCC 15264] gi|302193285|gb|ADL00857.1| MgsA AAA+ ATPase-like protein [Brevundimonas subvibrioides ATCC 15264] Length = 434 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 15/119 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L++ GQ + ++ IEA + L ++ GPPG GKTT+A+++A+ Sbjct: 21 LRPASLDQVVGQDHLLGEGGPIRRMIEAGR-----LGSMILWGPPGTGKTTIARLLAKAA 75 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131 G ++ S V + DL R +LF+DEIHR + ++ P +E+ Sbjct: 76 GYQYQQISA-VFSGVADLKKAFEQARVRRAAGQSTLLFVDEIHRFNRAQQDGFLPFVEE 133 >gi|168494301|ref|ZP_02718444.1| chromosome segregation helicase [Streptococcus pneumoniae CDC3059-06] gi|183575836|gb|EDT96364.1| chromosome segregation helicase [Streptococcus pneumoniae CDC3059-06] Length = 423 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|144897129|emb|CAM73993.1| hypothetical protein MGR_0811 [Magnetospirillum gryphiswaldense MSR-1] Length = 42 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 29/42 (69%) Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296 +D+MG D + YL I N+GGGPVG++T+S LSE RD + Sbjct: 1 MDQMGLDAMYAAYLKCIPDNYGGGPVGVDTLSTALSESRDTL 42 >gi|148984220|ref|ZP_01817515.1| ATPase, AAA family protein [Streptococcus pneumoniae SP3-BS71] gi|149006551|ref|ZP_01830250.1| ATPase, AAA family protein [Streptococcus pneumoniae SP18-BS74] gi|307127992|ref|YP_003880023.1| ATPase, AAA family [Streptococcus pneumoniae 670-6B] gi|147761849|gb|EDK68812.1| ATPase, AAA family protein [Streptococcus pneumoniae SP18-BS74] gi|147923509|gb|EDK74622.1| ATPase, AAA family protein [Streptococcus pneumoniae SP3-BS71] gi|301800575|emb|CBW33215.1| putative ATPase [Streptococcus pneumoniae OXC141] gi|306485054|gb|ADM91923.1| ATPase, AAA family [Streptococcus pneumoniae 670-6B] gi|332072951|gb|EGI83432.1| AAA ATPase, central region [Streptococcus pneumoniae GA17545] Length = 423 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM 4184] gi|150415671|sp|A1RV38|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small subunit 2; AltName: Full=Clamp loader small subunit 2 gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM 4184] Length = 320 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR+ +E E S L+ F+++ + H+LF GPPG GKTT+A V+AREL Sbjct: 11 RPRSFDEVVDLEEVKSRLREFVKSGN-----MPHLLFYGPPGTGKTTMALVLAREL 61 >gi|289167408|ref|YP_003445677.1| chromosome segregation helicase, ATPase, AAA family [Streptococcus mitis B6] gi|288906975|emb|CBJ21809.1| chromosome segregation helicase, ATPase, AAA family [Streptococcus mitis B6] Length = 423 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Thermoproteus neutrophilus V24Sta] gi|170934373|gb|ACB39634.1| Replication factor C [Thermoproteus neutrophilus V24Sta] Length = 319 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR+ +E E S L+ F+ R+ + H+LF GPPG GKTT+A V+AREL Sbjct: 11 RPRSFDEVVDLEEVKSRLREFV-----RSGNMPHLLFYGPPGTGKTTMALVLAREL 61 >gi|187932817|ref|YP_001885365.1| recombination factor protein RarA [Clostridium botulinum B str. Eklund 17B] gi|187720970|gb|ACD22191.1| ATPase, AAA family [Clostridium botulinum B str. Eklund 17B] Length = 428 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 10/145 (6%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP +E+F GQ K++ + + +F GPPG GKTTLA ++A+ + Sbjct: 7 LMRPSKIEDFVGQRHILGENTPLYNLIKSKK--ICNCIFYGPPGTGKTTLANIMAKYVDK 64 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDR-----DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + A D+ + L++ VL+IDE+ + ++ L +ED ++ Sbjct: 65 KFYKLNATT-ASVKDIQNITNELDNLLNYAGVVLYIDELQHFNKKQQQSLLEFIEDGRIT 123 Query: 136 LMVG--EGPSARSVKINLSRFTLIA 158 L+ E P K +SR + A Sbjct: 124 LIASTTENPYFVIHKAIISRCNIFA 148 >gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 6/64 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+ L++ GQ LK +++ ++ H+LF GPPG+GKTT A +AREL G N Sbjct: 20 RPQRLDDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALARELFGEN 74 Query: 82 FRST 85 +R Sbjct: 75 WRHN 78 >gi|306829967|ref|ZP_07463154.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC 6249] gi|304427978|gb|EFM31071.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC 6249] Length = 429 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 15 MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 72 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 73 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVV 127 Query: 137 MVG 139 M+G Sbjct: 128 MIG 130 >gi|114605196|ref|XP_001159500.1| PREDICTED: ATPase WRNIP1 isoform 1 [Pan troglodytes] Length = 640 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 19/110 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ +A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFN 334 >gi|213405279|ref|XP_002173411.1| DNA-dependent ATPase MGS1 [Schizosaccharomyces japonicus yFS275] gi|212001458|gb|EEB07118.1| DNA-dependent ATPase MGS1 [Schizosaccharomyces japonicus yFS275] Length = 514 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 14/143 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL+++ GQ E+ I R E +L+ G G+GKTTLA+++A+ G + Sbjct: 93 VRPKTLDDYVGQ-ESLVGKGGIIRNLIERDECPSMILW-GNSGVGKTTLARIIAKTTGAH 150 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S A D + ++ + ++F+DE+HR + ++I P +E + Sbjct: 151 FLEVSA-TSASVSDCRKIFEESQNLLRLTGKKTIVFLDEVHRFNRAQQDIFLPMVEKGLI 209 Query: 135 DLMVGEGPSARSVKINLSRFTLI 157 L PS R LSR ++ Sbjct: 210 TL----NPSFRLNSALLSRCSVF 228 >gi|159037439|ref|YP_001536692.1| recombination factor protein RarA [Salinispora arenicola CNS-205] gi|157916274|gb|ABV97701.1| AAA ATPase central domain protein [Salinispora arenicola CNS-205] Length = 502 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 19/165 (11%) Query: 6 GLLSRNVSQEDADISL-LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVG 61 G+ + +DA +++ +RP +L+E GQ + L + A + V+ G Sbjct: 24 GVAGFTPAGDDAPLAVRMRPTSLDELIGQDHLRAPGAPLHQLVSGAAPMS-----VILWG 78 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEI 114 PPG GKTT+A +VA F + S + A D+ A++ + VLFIDE+ Sbjct: 79 PPGSGKTTIAHLVAGATDRRFVAMSA-LNAGVKDVRAVIEAARRQRRTGGPPTVLFIDEV 137 Query: 115 HRLSIIVEEILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLI 157 HR S ++ L A+ED + L+ E P + LSR L+ Sbjct: 138 HRFSKTQQDSLLAAVEDRTVTLLAATTENPYFSVISPLLSRCVLL 182 >gi|227872171|ref|ZP_03990539.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus F0268] gi|227841984|gb|EEJ52246.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus F0268] Length = 438 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 27/147 (18%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL----- 54 E + N E +DI LL+P+ +++F GQ EA L V + R + Sbjct: 47 EEMGGENAGSEVSDIHLLKPKEIKDFLDEYVIGQDEAKKVLSVAVYNHYKRITSKVRDID 106 Query: 55 ---DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------E 104 ++L +GP G GKT LAQ +A+ LGV F + +AG + + N+ Sbjct: 107 VQKSNILMIGPTGTGKTYLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKLIQAA 166 Query: 105 DRD-------VLFIDEIHRLSIIVEEI 124 D D +++IDEI +++ E + Sbjct: 167 DYDISKAEIGIIYIDEIDKITKKSENV 193 >gi|199597549|ref|ZP_03210978.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001] gi|258508206|ref|YP_003170957.1| AAA family ATPase [Lactobacillus rhamnosus GG] gi|199591572|gb|EDY99649.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001] gi|257148133|emb|CAR87106.1| ATPase, AAA family [Lactobacillus rhamnosus GG] Length = 431 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ E ++ A L ++ GPPG GKT++A +A Sbjct: 9 MRPQNLDEVVGQQELVGPGRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + K + A + +L +DEIHRL ++ L P +E ++ L+ Sbjct: 67 FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLI 123 >gi|18426904|ref|NP_569079.1| ATPase WRNIP1 isoform 2 [Homo sapiens] gi|17511930|gb|AAH18923.1| Werner helicase interacting protein 1 [Homo sapiens] gi|55661734|emb|CAH73663.1| Werner helicase interacting protein 1 [Homo sapiens] gi|119575491|gb|EAW55087.1| Werner helicase interacting protein 1, isoform CRA_c [Homo sapiens] gi|123982094|gb|ABM82876.1| Werner helicase interacting protein 1 [synthetic construct] gi|123996921|gb|ABM86062.1| Werner helicase interacting protein 1 [synthetic construct] gi|189067919|dbj|BAG37857.1| unnamed protein product [Homo sapiens] Length = 640 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 19/110 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ +A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFN 334 >gi|255994886|ref|ZP_05428021.1| ATPase, AAA family [Eubacterium saphenum ATCC 49989] gi|255993599|gb|EEU03688.1| ATPase, AAA family [Eubacterium saphenum ATCC 49989] Length = 411 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 50/224 (22%) Query: 20 SLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + +RP LE+F GQ N V+ + R E+ +F GP G GKTTLA+++A+ Sbjct: 6 TYVRPERLEDFIGQEHFLKKNALVYNAIKEGRFES---AVFYGPSGTGKTTLARIIAKMQ 62 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR--------DVLFIDEIHRLSIIVEEILYPAME 130 +F + + +L +L +DR L++DEIHR + ++ L A+E Sbjct: 63 DDSFIQINAADVG-ISELKKILAEAKDRFYGIISKSTYLYVDEIHRWNKSQQDSLLSALE 121 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEI--- 185 + +IA+TT + N + R IR N YE Sbjct: 122 E--------------------GYIKVIASTTENPFFEINNQILSR----IR-NIYEFKPL 156 Query: 186 --EDLKTIVQRGAKLTG-----LAVTDEAACEIAMRSRGTPRIA 222 +D+ +++RG + + ++A IA +S G RIA Sbjct: 157 ANDDIVKLLKRGVDIFAGDGRVIDYDEDALMLIAEKSNGDARIA 200 >gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5] gi|150415673|sp|A1RWU7|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5] Length = 325 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 30/246 (12%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E+ + RPR+L+E Q E LK F+ + + + H+LF GPPG GKTT A + Sbjct: 3 EELWVEKYRPRSLDEIVDQEEIVKRLKEFV-----KNKNMPHLLFAGPPGTGKTTAALAL 57 Query: 75 AREL-GVNFRSTSGPVIAK-AGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILYPAMED 131 A +L G ++R + + A + + + ++D L I ++ +I++E Sbjct: 58 AHDLYGESWRDNTLELNASDERGIDVIRSRIKDYARTLPIGDVPFKLVILDEA------- 110 Query: 132 FQLDLMVGEGPSARSVKINL----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 D M G+ A + L +RF LIA + P+Q R + R D Sbjct: 111 ---DNMTGDAQQALRRTMELFSRNTRFILIA--NYASKIIEPIQSRCAV-FRFQPLPKGD 164 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 ++ A+ G+ V D A I S+G R A L+ A A ++ +T E+ Sbjct: 165 AFQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQ-----AASAISRNVTEEVVY 219 Query: 248 AALLRL 253 AAL R+ Sbjct: 220 AALGRV 225 >gi|149238019|ref|XP_001524886.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] gi|146451483|gb|EDK45739.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] Length = 377 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP LEE GQ + + ++ F+E K L H+LF GPPG GKT+ +ARE+ G N Sbjct: 59 RPENLEEVYGQGDIVNTVRRFVETGK-----LPHLLFYGPPGTGKTSTIVALAREIYGPN 113 Query: 82 FRS 84 +++ Sbjct: 114 YKN 116 >gi|229552006|ref|ZP_04440731.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus LMS2-1] gi|229314583|gb|EEN80556.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus LMS2-1] Length = 462 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ E ++ A L ++ GPPG GKT++A +A Sbjct: 40 MRPQNLDEVVGQQELVGPGRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 97 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + K + A + +L +DEIHRL ++ L P +E ++ L+ Sbjct: 98 FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLI 154 >gi|255947800|ref|XP_002564667.1| Pc22g06370 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591684|emb|CAP97925.1| Pc22g06370 [Penicillium chrysogenum Wisconsin 54-1255] Length = 539 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 18/152 (11%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP+TLEE GQ N L+ IE + + ++ G G GKTT+A+V+A +G Sbjct: 128 MRPKTLEEVCGQELVGPNGILRGLIEQDR-----VPSMILWGSAGTGKTTIARVIASLVG 182 Query: 80 VNF---RSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F STS V A + L + ++F DEIHR S +++ +E Q Sbjct: 183 SRFVEINSTSSGVAECKKIFAEARSELGLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 242 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160 + L+ E PS + LSR FTL T Sbjct: 243 VTLIGATTENPSFKVQNALLSRCRTFTLAKLT 274 >gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str. IM2] gi|42559510|sp|Q8ZWS2|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small subunit 2; AltName: Full=Clamp loader small subunit 2 gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str. IM2] Length = 319 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR+ +E E + L+ F++A + H+LF GPPG GKTT+A V+AREL Sbjct: 11 RPRSFDEVVDLEEVKARLRQFVKAGN-----MPHLLFYGPPGTGKTTMALVLAREL 61 >gi|288904363|ref|YP_003429584.1| ATPase, AAA family [Streptococcus gallolyticus UCN34] gi|306830395|ref|ZP_07463565.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977359|ref|YP_004287075.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731088|emb|CBI12634.1| putative ATPase, AAA family [Streptococcus gallolyticus UCN34] gi|304427420|gb|EFM30522.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177287|emb|CBZ47331.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 422 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKNIDQVIGQKHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATTDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|302546908|ref|ZP_07299250.1| AAA family ATPase [Streptomyces hygroscopicus ATCC 53653] gi|302464526|gb|EFL27619.1| AAA family ATPase [Streptomyces himastatinicus ATCC 53653] Length = 434 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 13/132 (9%) Query: 21 LLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 LLRP LE+ GQ + + + A+ R L + GPPG+GKTT+A+++AR Sbjct: 19 LLRPTQLEDVVGQDHLLAPDAPLGRMVAQQR---LSSAILWGPPGVGKTTIARLLARAGN 75 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + F S + +L + + R +LF+DEIHR + ++ P +ED Sbjct: 76 LAFEPVSA-TFSGVAELRKVFAAAQRRRGIGQGTLLFVDEIHRFNRAQQDSFLPYVEDGT 134 Query: 134 LDLM--VGEGPS 143 + L+ E PS Sbjct: 135 ITLIGATTENPS 146 >gi|182684741|ref|YP_001836488.1| AAA family ATPase [Streptococcus pneumoniae CGSP14] gi|182630075|gb|ACB91023.1| ATPase, AAA family [Streptococcus pneumoniae CGSP14] Length = 423 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKTIDQVIGQDHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|315658102|ref|ZP_07910974.1| AAA family ATPase [Staphylococcus lugdunensis M23590] gi|315496431|gb|EFU84754.1| AAA family ATPase [Staphylococcus lugdunensis M23590] Length = 422 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPRGIIRRMVETKR--LSSMIFYGPPGIGKTSIAKAISGSTA 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|325982389|ref|YP_004294791.1| MgsA AAA+ ATPase domain-containing protein [Nitrosomonas sp. AL212] gi|325531908|gb|ADZ26629.1| MgsA AAA+ ATPase domain-containing protein [Nitrosomonas sp. AL212] Length = 444 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 17/140 (12%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP+ L + GQ + A L++ E+ K + ++ GPPG GKT+LA++++ E Sbjct: 24 LLRPKQLSDVIGQNHLLGAGKPLRLAFESGKPHS-----MILWGPPGTGKTSLARLMSTE 78 Query: 78 LGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F S S V++ D+ + L +LF+DE+HR + ++ P +E Sbjct: 79 FDCEFISLSA-VLSGIKDIRNAIEEARSTLQQTGRHTILFVDEVHRFNKSQQDAFLPHIE 137 Query: 131 DFQLDLMVGEGPSARSVKIN 150 L +G S +IN Sbjct: 138 Q-GLITFIGATTENPSFEIN 156 >gi|328463405|gb|EGF35073.1| AAA family ATPase [Lactobacillus rhamnosus MTCC 5462] Length = 305 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ E ++ A L ++ GPPG GKT++A +A Sbjct: 35 MRPQNLDEVVGQQELVGPGRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 92 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + K + A + +L +DEIHRL ++ L P +E ++ L+ Sbjct: 93 FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLI 149 >gi|116805237|gb|ABK27669.1| putative ATPase (related to helicase subunit of Holliday junction resolvase) [Lactobacillus paracasei] Length = 295 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 41/225 (18%) Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112 F GPPG+GKTTLA+++AR F + S V + ++ ++ E + ++F+D Sbjct: 17 FWGPPGVGKTTLARIIARRTKAQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVD 75 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VG 164 EIHR + ++ P +E + +++G S ++N LSR F L T+ V Sbjct: 76 EIHRFNKAQQDAFLPYVERGSI-ILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVD 134 Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224 LL L+D RG L + + + +IA + G RIA Sbjct: 135 LLQRALKD--------------------PRGYGLQKVKIGKKLLAQIADFANGDARIALN 174 Query: 225 LLRRVRDFAEVAHAKTITREIADAALL----RLAIDKMGFDQLDL 265 L AE IT AD A L L DK G + +L Sbjct: 175 TLEMAVTNAET-KGGVITVTQADVAQLLTKKALLYDKNGEEHYNL 218 >gi|315042992|ref|XP_003170872.1| DNA-dependent ATPase MGS1 [Arthroderma gypseum CBS 118893] gi|311344661|gb|EFR03864.1| DNA-dependent ATPase MGS1 [Arthroderma gypseum CBS 118893] Length = 552 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 20/153 (13%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPRTL+E GQ N L+ IE + + ++ G G GKTT+A+V+A +G Sbjct: 147 MRPRTLDEVCGQELVGENGVLRGLIERDR-----VPSMILWGSAGTGKTTVARVIASMVG 201 Query: 80 VNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F STS V A+ L A N + ++F DEIHR S +++ +E Sbjct: 202 SRFVEINSTSSGV-AECKKLFAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFLGPVESG 260 Query: 133 QLDLM--VGEGPSARSVKINLSR---FTLIAAT 160 Q+ L+ E PS + LSR FTL T Sbjct: 261 QVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 293 >gi|258539421|ref|YP_003173920.1| AAA family ATPase [Lactobacillus rhamnosus Lc 705] gi|257151097|emb|CAR90069.1| ATPase, AAA family [Lactobacillus rhamnosus Lc 705] Length = 431 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ E ++ A L ++ GPPG GKT++A +A Sbjct: 9 MRPQNLDEVVGQQELVGPGRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + K + A + +L +DEIHRL ++ L P +E ++ L+ Sbjct: 67 FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLI 123 >gi|261199858|ref|XP_002626330.1| AAA family ATPase [Ajellomyces dermatitidis SLH14081] gi|239594538|gb|EEQ77119.1| AAA family ATPase [Ajellomyces dermatitidis SLH14081] Length = 543 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP+TL++ GQ V L+ IE + + ++ G G GKTT+A+V+A+ +G Sbjct: 134 MRPQTLDDVCGQELVGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 188 Query: 80 VNFR--STSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +++ IA+ L A N + +LF DEIHR S +++ +E Q Sbjct: 189 SRFVEINSTNSGIAEWKKLFAEAKNELSLSGKKTILFCDEIHRFSKSQQDVFLGPVESGQ 248 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160 + + E PS+R LSR FTL T Sbjct: 249 ITFIGATTENPSSRIQNALLSRCRTFTLAKLT 280 >gi|326917076|ref|XP_003204830.1| PREDICTED: ATPase WRNIP1-like [Meleagris gallopavo] Length = 440 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 13/113 (11%) Query: 57 VLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGPVIAKAGDLAALLTNLED-------R 106 ++ GPPG GKTTLA ++A ++ G+ F + S AK D+ +++ ++ + Sbjct: 38 IILWGPPGCGKTTLAHIIANSSKKKGMRFVTLSA-TSAKTNDVRDVISQAQNEKRLFKRK 96 Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +LFIDEIHR + ++ P +E + L+ E PS + LSR +I Sbjct: 97 TILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVI 149 >gi|289550607|ref|YP_003471511.1| ATPase of helicase subunit of the Holliday junction resolvase [Staphylococcus lugdunensis HKU09-01] gi|289180139|gb|ADC87384.1| ATPase of helicase subunit of the Holliday junction resolvase [Staphylococcus lugdunensis HKU09-01] Length = 422 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPRGIIRRMVETKR--LSSMIFYGPPGIGKTSIAKAISGSTA 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|83858523|ref|ZP_00952045.1| ATPase, AAA family protein [Oceanicaulis alexandrii HTCC2633] gi|83853346|gb|EAP91198.1| ATPase, AAA family protein [Oceanicaulis alexandrii HTCC2633] Length = 438 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 11/144 (7%) Query: 22 LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LRP+TLE+ GQ + + A+ R L ++ GPPG+GKTT+A+++A G+ Sbjct: 22 LRPQTLEDVVGQDHVLGPDGPLGRMLAQGR---LSSLILWGPPGVGKTTIARLLAERAGL 78 Query: 81 NFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + KA D A +LF+DEIHR + ++ P E+ + Sbjct: 79 EFDAISAVFSGVADLKKAFDRARARRQAGRGTLLFVDEIHRFNRAQQDGFLPVAEEGIIT 138 Query: 136 LM--VGEGPSARSVKINLSRFTLI 157 L+ E PS LSR ++ Sbjct: 139 LVGATTENPSFELNAALLSRCQVM 162 >gi|88856257|ref|ZP_01130917.1| ATPase related to the helicase subunit [marine actinobacterium PHSC20C1] gi|88814576|gb|EAR24438.1| ATPase related to the helicase subunit [marine actinobacterium PHSC20C1] Length = 472 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 12/133 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAK--ARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP LEE GQ + A + ++ GPPG GKTT+A+ +AR Sbjct: 47 MRPLVLEEIVGQKHLLQRGSPLMSLASDVGGSHGSASIILWGPPGTGKTTIAKAIARGSQ 106 Query: 80 VNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132 F S V A D+ + L RD VLF+DEIHR + ++ L P +E+ Sbjct: 107 RKFVELSA-VTAGVKDVRQTIEEALTARDLYGVSTVLFLDEIHRFTKAQQDALLPGVENG 165 Query: 133 QLDLMVG--EGPS 143 + L+ E PS Sbjct: 166 WIILIAATTENPS 178 >gi|259649523|dbj|BAI41685.1| recombination factor protein RarA [Lactobacillus rhamnosus GG] Length = 461 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ E ++ A L ++ GPPG GKT++A +A Sbjct: 39 MRPQNLDEVVGQQELVGPGRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 96 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + K + A + +L +DEIHRL ++ L P +E ++ L+ Sbjct: 97 FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLI 153 >gi|254875332|ref|ZP_05248042.1| AAA family ATPase [Francisella tularensis subsp. tularensis MA00-2987] gi|254841331|gb|EET19767.1| AAA family ATPase [Francisella tularensis subsp. tularensis MA00-2987] Length = 368 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 13/111 (11%) Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRL 117 G PG+GKT+LA+++A + F S V + D+ L+T+ + D VLF+DEIHR Sbjct: 2 CGKPGVGKTSLARIIASSKKLEFFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRF 60 Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPS--------ARSVKINLSRFTLIA 158 + ++IL P +E ++ L+ E P+ +R + L R +L+A Sbjct: 61 NKSQQDILLPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVA 111 >gi|239607930|gb|EEQ84917.1| AAA family ATPase [Ajellomyces dermatitidis ER-3] Length = 543 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 114/263 (43%), Gaps = 52/263 (19%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP+TL++ GQ V L+ IE + + ++ G G GKTT+A+V+A+ +G Sbjct: 134 MRPQTLDDVCGQELVGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 188 Query: 80 VNFR--STSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +++ IA+ L A N + +LF DEIHR S +++ +E Q Sbjct: 189 SRFVEINSTNSGIAEWKKLFAEAKNELSLSGKKTILFCDEIHRFSKSQQDVFLGPVESGQ 248 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + + E PS+R LSR FTL T +E++ Sbjct: 249 ITFIGATTENPSSRIQNALLSRCRTFTLAKLT------------------------VENI 284 Query: 189 KTIVQRGAKLTGLA------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 +I+ R ++ G V DE +A + G RI+ LL D ++ + +T Sbjct: 285 VSILNRALEVEGSNYSPSPLVDDELIKYLAAFADGDARISLNLLELTMD---LSRREGMT 341 Query: 243 REIADAALLR-LAIDKMGFDQLD 264 +E +L + L D++G D Sbjct: 342 KEDLKKSLTKTLVYDRVGDQHYD 364 >gi|254579519|ref|XP_002495745.1| ZYRO0C02090p [Zygosaccharomyces rouxii] gi|238938636|emb|CAR26812.1| ZYRO0C02090p [Zygosaccharomyces rouxii] Length = 338 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP +L++ GQ E + ++ F+E K L H+LF GPPG GKT+ +ARE+ G N Sbjct: 19 RPESLDDVYGQTEVITTIRKFLETGK-----LPHLLFYGPPGTGKTSSIIALAREIYGKN 73 Query: 82 FRS 84 + + Sbjct: 74 YSN 76 >gi|320354919|ref|YP_004196258.1| Recombination protein MgsA [Desulfobulbus propionicus DSM 2032] gi|320123421|gb|ADW18967.1| Recombination protein MgsA [Desulfobulbus propionicus DSM 2032] Length = 499 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP LE+F GQ V L I++ + + ++ GPPG GKTTLA ++A + Sbjct: 60 MRPTRLEDFVGQRHLVGEGKFLNQLIDSGR-----IPSLVLWGPPGSGKTTLATILAHAV 114 Query: 79 GVNFRSTSGPVIAKAGDLAALL---TNLEDRD----VLFIDEIHRLSIIVEEILYPAMED 131 +F S V++ ++ ++ ++ ++D +LF+DEIHR + ++ P +E Sbjct: 115 SAHFVFFSA-VLSGVKEIRQIVDQAKSVHEQDGRPTILFVDEIHRFNKSQQDAFLPHVES 173 Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLI 157 L L+ E PS + LSR ++ Sbjct: 174 GLLTLIGATTENPSFQITAPLLSRCQVL 201 >gi|315925759|ref|ZP_07921966.1| replication-associated recombination protein A [Pseudoramibacter alactolyticus ATCC 23263] gi|315620868|gb|EFV00842.1| replication-associated recombination protein A [Pseudoramibacter alactolyticus ATCC 23263] Length = 442 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 30/179 (16%) Query: 20 SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S +RP+T++ GQ L+ I+ + + ++ GPPG+GKTTLAQV+AR Sbjct: 20 SRIRPQTIDAIVGQEHLLGEGRALRRLIDR-----DDIPSMILWGPPGVGKTTLAQVIAR 74 Query: 77 E----LGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 + SG ++ A AA R ++FIDEIHR + ++ P Sbjct: 75 QTAAAFVAFSAVNSGIKDIKKIMGDAKSHAA----FGRRTLVFIDEIHRFNKAQQDAFLP 130 Query: 128 AMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPI 178 +ED + +++G S +IN LSR F L T LLT L + F P+ Sbjct: 131 YVEDGSI-VLIGATTENPSFEINSALLSRCRVFLLKPLTPEAIATLLTRALAEGFDAPL 188 >gi|327350459|gb|EGE79316.1| AAA family ATPase [Ajellomyces dermatitidis ATCC 18188] Length = 543 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP+TL++ GQ V L+ IE + + ++ G G GKTT+A+V+A+ +G Sbjct: 134 MRPQTLDDVCGQELVGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 188 Query: 80 VNFR--STSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +++ IA+ L A N + +LF DEIHR S +++ +E Q Sbjct: 189 SRFVEINSTNSGIAEWKKLFAEAKNELSLSGKKTILFCDEIHRFSKSQQDVFLGPVESGQ 248 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160 + + E PS+R LSR FTL T Sbjct: 249 ITFIGATTENPSSRIQNALLSRCRTFTLAKLT 280 >gi|85707807|ref|ZP_01038873.1| ATPase [Erythrobacter sp. NAP1] gi|85689341|gb|EAQ29344.1| ATPase [Erythrobacter sp. NAP1] Length = 439 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 18/134 (13%) Query: 9 SRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGP 62 +R + AD L LRPR+L+E GQ E A R A L ++ GP Sbjct: 12 ARAADEPRADAPLADRLRPRSLDEVIGQEHLTGP-----EGAIGRMVAAGRLASMVLWGP 66 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHR 116 PG GKT++A+++A +G+ F S S V + DL A + + +LF+DEIHR Sbjct: 67 PGTGKTSIARLLADAVGMRFVSISA-VFSGVADLKKAFAEADKMADAGKTTLLFVDEIHR 125 Query: 117 LSIIVEEILYPAME 130 + ++ P +E Sbjct: 126 FNRAQQDGFLPFVE 139 >gi|320547798|ref|ZP_08042082.1| AAA family ATPase [Streptococcus equinus ATCC 9812] gi|320447558|gb|EFW88317.1| AAA family ATPase [Streptococcus equinus ATCC 9812] Length = 422 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKNIDQVIGQKHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + +K + A L VL +DEIHRL ++ L P +E+ + + Sbjct: 67 FRTFNATTDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|253681470|ref|ZP_04862267.1| recombination factor protein RarA [Clostridium botulinum D str. 1873] gi|253561182|gb|EES90634.1| recombination factor protein RarA [Clostridium botulinum D str. 1873] Length = 419 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 14/105 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L EF GQ K+ K + L ++ GPPG+GKTTLA +++ + Sbjct: 21 MRPKNLNEFFGQEHIIGKGKLLRRLIKT--DNLTSIILYGPPGVGKTTLAHIISLDTKSE 78 Query: 82 F---RSTSGPV------IAKAGDLAALLTNLEDRDVLFIDEIHRL 117 F +TS V I KA + +L R + FIDEIH L Sbjct: 79 FVKLNATSTGVKEIREYIKKAEE---VLKFYGKRTIFFIDEIHSL 120 >gi|223999359|ref|XP_002289352.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335] gi|220974560|gb|EED92889.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335] Length = 678 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD-- 107 EA VLF GPPG GKT +A+ +A E G NF S GP + A G A + +L D+ Sbjct: 392 EASRGVLFYGPPGCGKTLMAKAIANECGANFISVKGPELLNAYFGGSEANVRDLFDKARA 451 Query: 108 ----VLFIDEIHRLS 118 +LF DE+ ++ Sbjct: 452 ASPCILFFDEMDSIA 466 >gi|145588933|ref|YP_001155530.1| recombination factor protein RarA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047339|gb|ABP33966.1| Recombination protein MgsA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 437 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 12/141 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+T+ E GQ + K + A A + +L+ GPPG+GKTTLA++ A+ Sbjct: 17 LRPKTITEVIGQTHLLATGKP-LNLAFASGKPHSMILW-GPPGVGKTTLARLSAKAFDRE 74 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED--F 132 F + S V+A ++ + + + +LF+DEIHR + ++ L P +E F Sbjct: 75 FIAISA-VLAGVKEIRESIEQAQQNMAQYGKQTILFVDEIHRFNKSQQDALLPHVESGLF 133 Query: 133 QLDLMVGEGPSARSVKINLSR 153 E PS LSR Sbjct: 134 TFIGATTENPSFEVNSALLSR 154 >gi|328947062|ref|YP_004364399.1| DNA polymerase III subunits gamma/tau [Treponema succinifaciens DSM 2489] gi|328447386|gb|AEB13102.1| DNA polymerase III, subunits gamma and tau [Treponema succinifaciens DSM 2489] Length = 572 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 97/246 (39%), Gaps = 49/246 (19%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+ + GQ LK I++ K + H LF GP G GKT+ A+++A+ L Sbjct: 11 RPQNFDNLIGQEFVAETLKNSIQSKK-----IAHAYLFSGPRGCGKTSTARILAKALNCQ 65 Query: 82 FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYP------- 127 GP G+ AA +T DV+ ID S+ I +E+L+P Sbjct: 66 ----KGPTAFPCGECAACKEITAGSSLDVIEIDGASNTSVNDVRQIKDEVLFPPNSCRYK 121 Query: 128 ----------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 + F L E P + I ATT + + ++ R Sbjct: 122 IYIIDEVHMLSTSAFNALLKTIEEPPPYCI--------FIFATTEIQKVPATIKSRCQ-- 171 Query: 178 IRLNF--YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-- 233 + NF IE +K + A G+ DEA IA S G+ R + L +V F+ Sbjct: 172 -QFNFRLVPIEKVKQQLAEAANELGIKAEDEALYWIARESTGSMRDSYTLFDQVAAFSGG 230 Query: 234 EVAHAK 239 E+ + K Sbjct: 231 EITYEK 236 >gi|322388766|ref|ZP_08062363.1| crossover junction endodeoxyribonuclease [Streptococcus infantis ATCC 700779] gi|321140385|gb|EFX35893.1| crossover junction endodeoxyribonuclease [Streptococcus infantis ATCC 700779] Length = 429 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 15 MRPQTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 72 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 73 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 127 Query: 137 MVG 139 M+G Sbjct: 128 MIG 130 >gi|114800296|ref|YP_761330.1| recombination factor protein RarA [Hyphomonas neptunium ATCC 15444] gi|114740470|gb|ABI78595.1| ATPase, AAA family [Hyphomonas neptunium ATCC 15444] Length = 436 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 13/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L + GQ A R L ++ GPPG+GKTT+A+++A+E + Sbjct: 22 LRPKKLSDVVGQGHLIGPDGPI--GAMLRNGRLVSMILWGPPGVGKTTIARLLAQETDLE 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S + + DL A E R +LF+DEIHR + ++ P +E + Sbjct: 80 FEALSA-IFSGVKDLRAAFEKAEARRRVGKGTLLFVDEIHRFNRSQQDGFLPFVESGTVT 138 Query: 136 LMVGEGPSARSVKIN---LSRFTLI 157 L VG S ++N LSR ++ Sbjct: 139 L-VGATTENPSFELNGALLSRCQVM 162 >gi|327401750|ref|YP_004342589.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6] gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6] Length = 322 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 6/68 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RPRTL+E GQ E L ++E + H+LF GPPG GKT A +AR+L Sbjct: 9 VEKYRPRTLKEVVGQEEVIQRLMGYVERKN-----IPHLLFAGPPGTGKTASAIALARDL 63 Query: 79 -GVNFRST 85 G N+R Sbjct: 64 FGENWRDN 71 >gi|189230336|ref|NP_001121492.1| Werner helicase interacting protein 1 [Xenopus (Silurana) tropicalis] gi|183985959|gb|AAI66299.1| LOC100158593 protein [Xenopus (Silurana) tropicalis] Length = 577 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 23/152 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77 +RP L ++ GQ KV E R + + ++ GPPG GKTTLA ++A+ Sbjct: 159 MRPTDLNDYMGQK------KVLGENTLLRNLLQSNDIPSIILWGPPGCGKTTLAHIIAKN 212 Query: 78 LGVN---FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYP 127 N F + S A D+ ++ ++ + +LF+DEIHR + ++ P Sbjct: 213 THKNSCRFVTLSA-TSASTSDVREVIKQAQNEQRLFKRKTILFVDEIHRFNKTQQDTFLP 271 Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS + LSR +I Sbjct: 272 HVECGTITLIGATTENPSFQVNTALLSRCRVI 303 >gi|319940238|ref|ZP_08014590.1| ATPase [Streptococcus anginosus 1_2_62CV] gi|319810540|gb|EFW06876.1| ATPase [Streptococcus anginosus 1_2_62CV] Length = 423 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ + + GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKNINQVIGQKHLVGEGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E+ L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLEKTKQDFLLPLLEN-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|46447333|ref|YP_008698.1| recombination factor protein RarA [Candidatus Protochlamydia amoebophila UWE25] gi|46400974|emb|CAF24423.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 422 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ L + GQ + + +++ V+ GPPG GKT++A++ A+ + Sbjct: 12 LRPKNLNDIVGQDHILGENGLITKTIESQIPL--SVILWGPPGCGKTSIARLYAQAFNMQ 69 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S S + + DL + +++ +LF+DEIHR + ++ P +E+ + Sbjct: 70 FISMSA-IFSGVADLKKTIKEAQNQPLFHKGTLLFVDEIHRFNKSQQDAFLPFVENGTI- 127 Query: 136 LMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRF 174 +++G S +N LSR ++ G L +R+ Sbjct: 128 ILIGATTENPSFYLNGALLSRLRVLPIYPLDGFSLEQLLERY 169 >gi|42560990|ref|NP_975441.1| recombination factor protein RarA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492487|emb|CAE77083.1| putative ATPase, AAA family [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320816|gb|ADK69459.1| recombination factor protein RarA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 411 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 13/116 (11%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LLRP+T ++ GQ E K I ++F GP G+GKT+ A +A +L + Sbjct: 8 LLRPKTTKDIIGQTEILKP-KGLINKM-ILNNYCTSLIFYGPSGVGKTSFAISLANDLKI 65 Query: 81 NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130 ++ + + D LTN+ + R +L IDEIHRL+ ++IL ME Sbjct: 66 DYE-----IFNASYDKKEKLTNIIQTALKQKRFILIIDEIHRLNKDKQDILLEYME 116 >gi|121602885|ref|YP_989024.1| recombination factor protein RarA [Bartonella bacilliformis KC583] gi|120615062|gb|ABM45663.1| ATPase, AAA family protein [Bartonella bacilliformis KC583] Length = 439 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L E GQ + F+ A A +L ++F G PG GKTT+A+++A E Sbjct: 24 MRPCSLSEVVGQSHLI-GAEGFLSRMVA-AGSLGSMIFWGAPGTGKTTVARLLALETNFA 81 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F S + K ++A + +LF+DEIHR + ++I P MED + + Sbjct: 82 FEQVSAIFTGITELKKVFEVARARFMSGAKTLLFVDEIHRFNRAQQDIFLPFMEDGTV-V 140 Query: 137 MVG---EGPS 143 +VG E PS Sbjct: 141 LVGATTENPS 150 >gi|332299032|ref|YP_004440954.1| DNA polymerase III, subunits gamma and tau [Treponema brennaborense DSM 12168] gi|332182135|gb|AEE17823.1| DNA polymerase III, subunits gamma and tau [Treponema brennaborense DSM 12168] Length = 672 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 27/229 (11%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+ ++ GQ + LK I++ K + H LF GP G GKT+ A+++A+ L Sbjct: 11 RPQRFDDLVGQEFVAATLKNAIQSGK-----IAHAYLFAGPRGCGKTSSARILAKALNCE 65 Query: 82 FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPA----ME 130 GP G+ AA +T DV+ ID S+ I +E+L+P + Sbjct: 66 ----KGPAAVPCGECAACREITRGSSLDVIEIDGASNTSVNDVRQIKDEVLFPPNSCRYK 121 Query: 131 DFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 + +D + SA ++++ I ATT + + ++ R + Sbjct: 122 IYIIDEVHMLSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSRCQ-QFHFRLVAV 180 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 E +K ++ + A + DEA IA S G+ R A L +V F++ Sbjct: 181 EQIKELLAQAAAEIQVQADDEALYWIARESTGSIRDAYTLFDQVSSFSD 229 >gi|188582981|ref|YP_001926426.1| ATP-dependent protease La [Methylobacterium populi BJ001] gi|179346479|gb|ACB81891.1| ATP-dependent protease La [Methylobacterium populi BJ001] Length = 803 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L Q +AR +G +F R + G V +A G++ + Sbjct: 373 LCFVGPPGVGKTSLGQSIARAMGRSFVRVSLGGVHDEAEIRGHRRTYVGAMPGNIIQAVR 432 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 RD V+ +DEI ++ S + E+L P D +G V +LS Sbjct: 433 KAGSRDCVVMLDEIDKMGRGIQGDPSAAMLEVLDPEQNGTFRDNYLG-------VPFDLS 485 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 R IA + + +PL+DR + I L Y ++ I +R Sbjct: 486 RIAFIATANMLDTIPSPLRDRMEV-ISLAGYTEDEKHEIARR 526 >gi|330829975|ref|YP_004392927.1| ATPase [Aeromonas veronii B565] gi|328805111|gb|AEB50310.1| ATPase, AAA family [Aeromonas veronii B565] Length = 445 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 17/143 (11%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+ L+++ GQ A L+ I A + ++ GPPG GKTTLA+++A Sbjct: 19 MRPQNLDQYIGQQHILGADKPLRKAILAGHCHS-----MILWGPPGTGKTTLAELMAHYC 73 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 S V + ++ A + ++ R +LF+DE+HR + +++ P +ED Sbjct: 74 QAEVERLSA-VTSGIKEIRAAIDKAKENSWRGVRTILFVDEVHRFNKSQQDVFLPHIEDG 132 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + + E PS LSR Sbjct: 133 TITFIGATTENPSFELNNALLSR 155 >gi|332246197|ref|XP_003272239.1| PREDICTED: ATPase WRNIP1 isoform 4 [Nomascus leucogenys] Length = 613 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 19/110 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 204 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 258 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + Sbjct: 259 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFN 307 >gi|295428203|ref|ZP_06820835.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128561|gb|EFG58195.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16] Length = 427 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 5/141 (3%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 NVS E S +RP+ ++E Q + + L ++F GPPG+GKT++ Sbjct: 3 NVSTEPL-ASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSI 59 Query: 71 AQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 A+ ++ FR + K L + + +L +DEIHRL ++ L P + Sbjct: 60 AKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHL 119 Query: 130 EDFQLDLMVGEGPSARSVKIN 150 E+ ++ +++G S IN Sbjct: 120 ENGKI-VLIGATTSNPYHAIN 139 >gi|212224565|ref|YP_002307801.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1] gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1] Length = 326 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 6/68 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+ LE+ GQ LK +++ ++ H+LF GPPG+GKTT A +AREL Sbjct: 16 VEKYRPQRLEDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALAREL 70 Query: 79 -GVNFRST 85 G ++R Sbjct: 71 FGEHWRHN 78 >gi|82701313|ref|YP_410879.1| recombination factor protein RarA [Nitrosospira multiformis ATCC 25196] gi|82409378|gb|ABB73487.1| Recombination protein MgsA [Nitrosospira multiformis ATCC 25196] Length = 437 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 24/162 (14%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP L++ GQ L++ E+ K + ++ GPPG GKTTLA+++A Sbjct: 18 LRPHELKDVVGQPHLLGPGKPLRLAFESGKPHS-----MILWGPPGSGKTTLARLMASAF 72 Query: 79 GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V+A D+ A+L +LF+DE+HR + ++ P +E Sbjct: 73 DAEFIALSA-VLAGVKDIRDAIERARAVLHQSSRHTILFVDEVHRFNKSQQDAFLPFVEQ 131 Query: 132 FQLDLMVGEGPSARSVKIN---LSR---FTLIA-ATTRVGLL 166 L +G S ++N LSR + L A +TT +G L Sbjct: 132 -GLVTFIGATTENPSFEVNGALLSRAQVYVLTALSTTELGTL 172 >gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1] gi|150421641|sp|Q9YBS7|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1] Length = 325 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 6/62 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPR+L++ Q LK F+ + + H+LF GPPG GKTT A +A +L G N Sbjct: 14 RPRSLDDIVDQKHVVERLKQFV-----KQRNMPHLLFAGPPGTGKTTAAHALAHDLFGEN 68 Query: 82 FR 83 +R Sbjct: 69 YR 70 >gi|189485323|ref|YP_001956264.1| hypothetical protein TGRD_320 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287282|dbj|BAG13803.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 439 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 10/104 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 + P + EEFTGQ + K+ + +A + L V+F GPPG GK+ LA+++A + Sbjct: 22 MAPSSFEEFTGQDNIVGDGKLLRRSIEA--DNLGSVIFFGPPGTGKSALARIIALKTKAY 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLS 118 F + V D+ ++ E R +L +DEIH + Sbjct: 80 FEEVNA-VTTSTADIRKIIAAAEARTEMSGRKTILMLDEIHHFN 122 >gi|294848657|ref|ZP_06789403.1| ATPase [Staphylococcus aureus A9754] gi|294824683|gb|EFG41106.1| ATPase [Staphylococcus aureus A9754] Length = 427 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 5/141 (3%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 NVS E S +RP+ ++E Q + + L ++F GPPG+GKT++ Sbjct: 3 NVSTEPL-ASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSI 59 Query: 71 AQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 A+ ++ FR + K L + + +L +DEIHRL ++ L P + Sbjct: 60 AKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHL 119 Query: 130 EDFQLDLMVGEGPSARSVKIN 150 E+ ++ +++G S IN Sbjct: 120 ENGKI-VLIGATTSNPYHAIN 139 >gi|156841413|ref|XP_001644080.1| hypothetical protein Kpol_1014p42 [Vanderwaltozyma polyspora DSM 70294] gi|156114714|gb|EDO16222.1| hypothetical protein Kpol_1014p42 [Vanderwaltozyma polyspora DSM 70294] Length = 570 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 16/136 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--- 78 LRP+ + ++ GQ S + + + ++ GPPG+GKT+LA+++ +E Sbjct: 129 LRPQEIRDYVGQQHILSQQNGTLYKY-VKEGTIPSMILWGPPGVGKTSLARLLTKEATKN 187 Query: 79 GVNFR--STSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129 G N+ TS A +L ++ + R VLFIDEIHR + +++L P + Sbjct: 188 GTNYHLIETSA-TKANTQELRSIFDKAKKDFQLTKRRIVLFIDEIHRFNKAQQDLLLPHV 246 Query: 130 EDFQLDLM--VGEGPS 143 E+ + L+ E PS Sbjct: 247 ENGDIILIGATTENPS 262 >gi|126322073|ref|XP_001368463.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform 2 [Monodelphis domestica] Length = 677 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 21/128 (16%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFV 60 RE + + V + AD +RP TL+E+ GQ + L+ +E+ + + ++ Sbjct: 242 REEIWQKLVGKPLADK--MRPATLQEYIGQNKVVGQETLLRSLLESNE-----IPSLILW 294 Query: 61 GPPGLGKTTLAQVVARELGVN---FRSTSGPVIAKAGDLAALLTNLED-------RDVLF 110 GPPG GKTTLA ++A N F + S AK D+ ++ ++ + +LF Sbjct: 295 GPPGCGKTTLAYIIANNSKKNSMRFVTLSA-TSAKTSDVRDVIKQAQNEKNFFKRKTILF 353 Query: 111 IDEIHRLS 118 IDEIHR + Sbjct: 354 IDEIHRFN 361 >gi|148643237|ref|YP_001273750.1| replication factor C large subunit [Methanobrevibacter smithii ATCC 35061] gi|158513781|sp|A5UMF4|RFCL_METS3 RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|148552254|gb|ABQ87382.1| replication factor C, large subunit, RfcL [Methanobrevibacter smithii ATCC 35061] Length = 492 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP+TL+E G + + ++ +++ KA +L VGPPG+GKTTLAQ +ARE Sbjct: 8 RPKTLDEVVGNNKEKALIQKWVDNWKA-GNPQKPLLLVGPPGIGKTTLAQAIAREFS 63 >gi|114570317|ref|YP_756997.1| recombination factor protein RarA [Maricaulis maris MCS10] gi|114340779|gb|ABI66059.1| Recombination protein MgsA [Maricaulis maris MCS10] Length = 435 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA-LDHVLFVGPPGLGKTTLAQVVARELGV 80 LRP+TL+E GQ + A+ R++ L ++ GPPG+GKTT+A+++A + + Sbjct: 22 LRPQTLDEVVGQDHLLAGKGPI---ARMRSQGRLASLILWGPPGVGKTTIARLLAEDSDL 78 Query: 81 NFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + KA + A +LF+DEIHR + ++ P +E+ + Sbjct: 79 EFEPLSAVFSGVADLKKAFERARARRQQGRGTLLFVDEIHRFNRAQQDGFLPVVEEGTVT 138 Query: 136 LM--VGEGPSARSVKINLSRFTLI 157 L+ E PS LSR ++ Sbjct: 139 LVGATTENPSFELNAALLSRCQVL 162 >gi|261349970|ref|ZP_05975387.1| replication factor C large subunit [Methanobrevibacter smithii DSM 2374] gi|288860753|gb|EFC93051.1| replication factor C large subunit [Methanobrevibacter smithii DSM 2374] Length = 492 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP+TL+E G + + ++ +++ KA +L VGPPG+GKTTLAQ +ARE Sbjct: 8 RPKTLDEVVGNNKEKALIQKWVDNWKA-GNPQKPLLLVGPPGIGKTTLAQAIAREFS 63 >gi|109069427|ref|XP_001090335.1| PREDICTED: ATPase WRNIP1 isoform 1 [Macaca mulatta] Length = 640 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 19/110 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 231 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 285 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFN 334 >gi|6016879|dbj|BAA31534.2| A2-5a orf6~hypothetical protein homologous to stage V sporulation protein K [Bacillus sp.] Length = 549 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 46/235 (19%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGV-------NFRS-TSGPVIAKAGDLAALLTNLEDRD 107 H++F G PG GKTT+A++VA+ L V R T ++ + A LTN + Sbjct: 61 HMVFTGNPGTGKTTIARIVAKYLKVIGVLSTGQLREVTRADLVGEYVGQTARLTNDVIKS 120 Query: 108 ----VLFIDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 VLFIDE + LS I + L MED++ +L+V + +K L+ Sbjct: 121 ALGGVLFIDEAYTLSRNDHDTFGIEAIDTLVKGMEDYRDELVVILAGYSEEMKQFLN--- 177 Query: 156 LIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM- 213 TNP L+ RF + Y E++ I + +K G +TD +C+ AM Sbjct: 178 -----------TNPGLRSRFPNIVHFEDYTPEEMWEISRIISKQKGYRITD--SCQDAML 224 Query: 214 ------RSRGTPRIA-GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + +G GRL+R V + A + + + EI +A + LA + F+ Sbjct: 225 KLFEKSQIKGKNDSGNGRLVRNVIEAAILKQSSRLVHEI-NAPMDELAFEDFEFE 278 >gi|331269735|ref|YP_004396227.1| ATPase [Clostridium botulinum BKT015925] gi|329126285|gb|AEB76230.1| ATPase, AAA family [Clostridium botulinum BKT015925] Length = 419 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 20/108 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+ L EF GQ L+ IE + L ++ GPPG+GKTTLA +++ + Sbjct: 21 MRPKNLNEFFGQQHIVGKGKLLRRLIET-----DNLTSIILYGPPGVGKTTLAHIISLDT 75 Query: 79 GVNF---RSTSGPV------IAKAGDLAALLTNLEDRDVLFIDEIHRL 117 F +TS V I KA + +L R + FIDEIH L Sbjct: 76 KSEFVKLNATSAGVKEIREYIKKAEE---VLKFYGKRTIFFIDEIHSL 120 >gi|296197531|ref|XP_002746323.1| PREDICTED: ATPase WRNIP1-like isoform 2 [Callithrix jacchus] Length = 641 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 19/110 (17%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 232 MRPDTLQDYFGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 286 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118 ++ + F + S AK D+ ++ ++ + +LFIDEIHR + Sbjct: 287 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFN 335 >gi|154287624|ref|XP_001544607.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150408248|gb|EDN03789.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 547 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 52/263 (19%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPR+L++ GQ + L+ IE + + ++ G G GKTT+A+V+A+ +G Sbjct: 135 MRPRSLDDIYGQELIGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 189 Query: 80 VNFR--STSGPVIAKAGDLAALLTN---LEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +++ +A+ L A N L R ++F DEIHR S +++ +E Q Sbjct: 190 SRFVEINSTNSGVAECKKLFAEAKNELSLSGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 249 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + L+ E PS + LSR FTL T ED+ Sbjct: 250 ITLIGATTENPSFKVQNALLSRCRTFTLAKLTD------------------------EDI 285 Query: 189 KTIVQRGAKLTGLA------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 +I+ R K+ G V DE +A + G R + LL D ++ + +T Sbjct: 286 VSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMD---LSRREGMT 342 Query: 243 REIADAALLR-LAIDKMGFDQLD 264 RE +L R L D+ G D Sbjct: 343 REDLKKSLTRTLVYDRAGDQHYD 365 >gi|295669242|ref|XP_002795169.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb01] gi|226285103|gb|EEH40669.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb01] Length = 539 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP+TL++ GQ V L+ IE + + ++ G G GKTT+A+V+A+ +G Sbjct: 127 MRPQTLDDVCGQELVGPSGVLRGLIEQDR-----VPSMVLWGGAGTGKTTIARVIAKMVG 181 Query: 80 VNFR--STSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +++ +A+ L A N + +LF DEIHR S +++ +E Q Sbjct: 182 SRFVEINSTNSGVAECKKLFAEARNELSLSGKKTILFCDEIHRFSKSQQDVFLSPVESGQ 241 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160 + L+ E PS + LSR FTL T Sbjct: 242 ITLIGTTTENPSFKVQNALLSRCRTFTLAKLT 273 >gi|42522441|ref|NP_967821.1| recombination factor protein RarA [Bdellovibrio bacteriovorus HD100] gi|39574973|emb|CAE78814.1| ATPase, AAA family [Bdellovibrio bacteriovorus HD100] Length = 449 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 22/151 (14%) Query: 21 LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +LRP+TL++ GQ + S L + R L ++ GPPG GKTT A +++ Sbjct: 31 ILRPKTLDDIFGQQKTLGPQSKLGQML-----RKGYLPSLIIWGPPGTGKTTFALALSQH 85 Query: 78 LGVNFRS----TSGPV----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 ++ SG + +AG L + + +LF+DEIHR + +++L P + Sbjct: 86 FNAHYVHLNAVDSGAKALREVGEAGKDRRL--QYQQKTILFVDEIHRFNKAQQDVLLPFV 143 Query: 130 EDFQLDLMVG---EGPSARSVKINLSRFTLI 157 E L ++VG E PS + LSR ++ Sbjct: 144 EKGDL-VLVGATTENPSYELNRALLSRCRVV 173 >gi|319936498|ref|ZP_08010914.1| recombination protein rarA [Coprobacillus sp. 29_1] gi|319808613|gb|EFW05165.1| recombination protein rarA [Coprobacillus sp. 29_1] Length = 421 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 7/113 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L++ GQ +F + K + + +L+ GPPG GKTTLA +A +L + Sbjct: 9 MRPTSLKDVLGQKHIIGENALFTQFVK-KHHPMSTILY-GPPGCGKTTLASALANDLNIP 66 Query: 82 FR---STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 +R +++G K D+ + + IDE+HRL+ ++ L P +E+ Sbjct: 67 YRIFNASTGN--KKEMDIIIEEAKMSGELFVIIDEVHRLNKDKQDHLLPHIEN 117 >gi|28897881|ref|NP_797486.1| recombination factor protein RarA [Vibrio parahaemolyticus RIMD 2210633] gi|260364483|ref|ZP_05777108.1| recombination factor protein RarA [Vibrio parahaemolyticus K5030] gi|260877040|ref|ZP_05889395.1| recombination factor protein RarA [Vibrio parahaemolyticus AN-5034] gi|260898067|ref|ZP_05906563.1| recombination factor protein RarA [Vibrio parahaemolyticus Peru-466] gi|260902448|ref|ZP_05910843.1| recombination factor protein RarA [Vibrio parahaemolyticus AQ4037] gi|28806094|dbj|BAC59370.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308088962|gb|EFO38657.1| recombination factor protein RarA [Vibrio parahaemolyticus Peru-466] gi|308093687|gb|EFO43382.1| recombination factor protein RarA [Vibrio parahaemolyticus AN-5034] gi|308110636|gb|EFO48176.1| recombination factor protein RarA [Vibrio parahaemolyticus AQ4037] gi|308114616|gb|EFO52156.1| recombination factor protein RarA [Vibrio parahaemolyticus K5030] Length = 449 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 9/147 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ ++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTIGQYIGQQHILGPGKPLRRALEAGH--VHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 S AA+ E+ R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138 Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165 >gi|54297677|ref|YP_124046.1| recombination factor protein RarA [Legionella pneumophila str. Paris] gi|53751462|emb|CAH12880.1| hypothetical protein lpp1728 [Legionella pneumophila str. Paris] Length = 434 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ ++E GQ L++ +K L ++ GPPG+GKTT+A++ A+ Sbjct: 16 LRPKHIDEVIGQSHLLGEGKPLRLCFMGSK-----LHSMILWGPPGVGKTTIARLTAQAF 70 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 + + S V + D+ A + ++ + +LFIDEIHR + ++ L P E Sbjct: 71 DCEWIALSA-VFSGVKDIRAAIEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTE 127 >gi|70993728|ref|XP_751711.1| AAA family ATPase [Aspergillus fumigatus Af293] gi|66849345|gb|EAL89673.1| AAA family ATPase, putative [Aspergillus fumigatus Af293] gi|159125367|gb|EDP50484.1| AAA family ATPase, putative [Aspergillus fumigatus A1163] Length = 539 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 111/263 (42%), Gaps = 52/263 (19%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPRTL+E GQ N L+ IE + + ++ G G GKTT+A+V+A +G Sbjct: 126 MRPRTLDEVCGQELVGPNGVLRGLIEQDRVPS-----MILWGHAGTGKTTIARVIASMVG 180 Query: 80 VNF---RSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F STS V A + L + ++F DEIHR S +++ +E Q Sbjct: 181 SRFVEINSTSTGVAECKKIFAEARSELGLTGRKTIVFCDEIHRFSKSQQDVFLGPVESGQ 240 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + L+ E PS + LSR FTL + L D ED+ Sbjct: 241 ITLIGATTENPSFKVQNALLSRCRTFTL-----------SKLSD-------------EDV 276 Query: 189 KTIVQRGAKLTGLA------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 K+I+ R ++ G V DE +A S G R + LL D ++ ++T Sbjct: 277 KSILDRALRVEGPNYSPSSLVDDELIEYLARFSDGDARTSLNLLELAMDLSK---RPSMT 333 Query: 243 REIADAALLR-LAIDKMGFDQLD 264 +E +L + L D+ G D Sbjct: 334 KEELKRSLTKTLVYDRAGDQHYD 356 >gi|228472019|ref|ZP_04056787.1| ATPase, AAA family [Capnocytophaga gingivalis ATCC 33624] gi|228276631|gb|EEK15344.1| ATPase, AAA family [Capnocytophaga gingivalis ATCC 33624] Length = 428 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 13/108 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG---------PVIAKAGDLAALLTNLEDRD 107 ++F GPPG GKTTLA ++A+E F S S +I K+ L T Sbjct: 44 LIFWGPPGTGKTTLAHIIAKESQRAFFSLSAISSGIKDVRDIIEKSKREQGLFT--ARNP 101 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR 153 ++FIDEIHR + ++ L A+E + L+ E PS + LSR Sbjct: 102 IIFIDEIHRFNKTQQDSLLEAVERGWVTLIGATTENPSFEVIPALLSR 149 >gi|304321467|ref|YP_003855110.1| hypothetical protein PB2503_09579 [Parvularcula bermudensis HTCC2503] gi|303300369|gb|ADM09968.1| hypothetical protein PB2503_09579 [Parvularcula bermudensis HTCC2503] Length = 402 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 9/98 (9%) Query: 54 LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------D 107 L ++ GPPG+GKTTLA+++A + + F S S + + DL + E R Sbjct: 17 LPSLILWGPPGVGKTTLARLLAGAVDLEFVSISA-IFSGVADLRKVFEAAEGRRQTGQGT 75 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPS 143 +LF+DEIHR + ++ P ME + L+ E PS Sbjct: 76 LLFVDEIHRFNRAQQDSFLPVMEKGTITLVGATTENPS 113 >gi|148268108|ref|YP_001247051.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus JH9] gi|150394176|ref|YP_001316851.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus JH1] gi|257793701|ref|ZP_05642680.1| recombination protein MgsA [Staphylococcus aureus A9781] gi|258446870|ref|ZP_05695024.1| recombination protein MgsA [Staphylococcus aureus A6300] gi|258453603|ref|ZP_05701581.1| recombination protein MgsA [Staphylococcus aureus A5937] gi|282928261|ref|ZP_06335866.1| ATPase [Staphylococcus aureus A10102] gi|295406749|ref|ZP_06816554.1| ATPase [Staphylococcus aureus A8819] gi|297245669|ref|ZP_06929534.1| ATPase [Staphylococcus aureus A8796] gi|147741177|gb|ABQ49475.1| Recombination protein MgsA [Staphylococcus aureus subsp. aureus JH9] gi|149946628|gb|ABR52564.1| AAA ATPase central domain protein [Staphylococcus aureus subsp. aureus JH1] gi|257787673|gb|EEV26013.1| recombination protein MgsA [Staphylococcus aureus A9781] gi|257854445|gb|EEV77394.1| recombination protein MgsA [Staphylococcus aureus A6300] gi|257864334|gb|EEV87084.1| recombination protein MgsA [Staphylococcus aureus A5937] gi|282590068|gb|EFB95150.1| ATPase [Staphylococcus aureus A10102] gi|285817309|gb|ADC37796.1| ATPase related to helicase subunit of the Holliday junction resolvase [Staphylococcus aureus 04-02981] gi|294968496|gb|EFG44520.1| ATPase [Staphylococcus aureus A8819] gi|297177320|gb|EFH36572.1| ATPase [Staphylococcus aureus A8796] gi|312830014|emb|CBX34856.1| ATPase family associated with various cellular activities (AAA) family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129910|gb|EFT85900.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus CGS03] gi|329727592|gb|EGG64048.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 21172] Length = 424 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|68490424|ref|XP_710962.1| hypothetical protein CaO19.10723 [Candida albicans SC5314] gi|46432227|gb|EAK91721.1| hypothetical protein CaO19.10723 [Candida albicans SC5314] Length = 361 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 7/64 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80 RP +LEE GQ E ++ F+E K L H+LF GPPG GKT+ +A+E+ Sbjct: 30 RPDSLEEVKGQQEIVDTVRKFVETGK-----LPHLLFYGPPGTGKTSTIIALAKEIYGAT 84 Query: 81 NFRS 84 N+++ Sbjct: 85 NYKN 88 >gi|15924617|ref|NP_372151.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Mu50] gi|15927207|ref|NP_374740.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus N315] gi|156979945|ref|YP_001442204.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Mu3] gi|255006413|ref|ZP_05145014.2| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258438200|ref|ZP_05689484.1| recombination factor protein RarA [Staphylococcus aureus A9299] gi|258443663|ref|ZP_05692002.1| recombination factor protein RarA [Staphylococcus aureus A8115] gi|269203253|ref|YP_003282522.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus ED98] gi|282893130|ref|ZP_06301364.1| ATPase [Staphylococcus aureus A8117] gi|296275913|ref|ZP_06858420.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MR1] gi|13701425|dbj|BAB42719.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247398|dbj|BAB57789.1| similar to ATPase, AAA family [Staphylococcus aureus subsp. aureus Mu50] gi|156722080|dbj|BAF78497.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257848244|gb|EEV72235.1| recombination factor protein RarA [Staphylococcus aureus A9299] gi|257851069|gb|EEV75012.1| recombination factor protein RarA [Staphylococcus aureus A8115] gi|262075543|gb|ACY11516.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus ED98] gi|282764448|gb|EFC04574.1| ATPase [Staphylococcus aureus A8117] Length = 424 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|323342313|ref|ZP_08082545.1| AAA family ATPase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463425|gb|EFY08619.1| AAA family ATPase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 419 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 16/156 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+++ GQ ++ ++ L ++F GPPG GKTT A +A L Sbjct: 9 VRPETIDDIIGQEHLLGENQILRNVVES--GNLHSMIFFGPPGTGKTTTAMAIANSLKRP 66 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 +R + V L AL E V+ IDE+HRL+ ++IL P +E L M+G Sbjct: 67 YRLFNA-VTDNKKKLDALFLEAEMSSGLVVIIDEVHRLNKDKQDILLPHVES-GLITMIG 124 Query: 140 E---------GPSARSVKINLSRFTLIAATTRVGLL 166 P+ RS +++L F ++ V +L Sbjct: 125 ATTANPYFSINPAIRS-RVHLFEFKPLSYNNIVSIL 159 >gi|57867117|ref|YP_188766.1| recombination factor protein RarA [Staphylococcus epidermidis RP62A] gi|251811032|ref|ZP_04825505.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis BCM-HMP0060] gi|282875948|ref|ZP_06284815.1| recombination factor protein RarA [Staphylococcus epidermidis SK135] gi|57637775|gb|AAW54563.1| ATPase, AAA family [Staphylococcus epidermidis RP62A] gi|251805450|gb|EES58107.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis BCM-HMP0060] gi|281294973|gb|EFA87500.1| recombination factor protein RarA [Staphylococcus epidermidis SK135] gi|329735258|gb|EGG71550.1| recombination factor protein RarA [Staphylococcus epidermidis VCU045] gi|329737108|gb|EGG73362.1| recombination factor protein RarA [Staphylococcus epidermidis VCU028] Length = 423 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKR--LSSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + V D+ ++ + + +L +DEIHRL ++ L P +E+ ++ ++ Sbjct: 66 FKFRQLNA-VTNTKKDMQLIVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123 Query: 138 VGEGPSARSVKIN 150 +G S IN Sbjct: 124 IGATTSNPYHAIN 136 >gi|253756509|ref|YP_003029649.1| ATPase [Streptococcus suis BM407] gi|251818973|emb|CAZ56820.1| putative ATPase [Streptococcus suis BM407] Length = 428 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++++E GQ K+ A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKSIDEVIGQEHLVGPGKIIRRMIDANM--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + IA+ + L VL +DEIHRL+ ++ L P +E+ Sbjct: 67 FRTFNATTDNQKRLQEIAEEAKFSGGL-------VLLLDEIHRLNKTKQDFLLPLLENGN 119 Query: 134 LDLMVG 139 + +M+G Sbjct: 120 I-IMIG 124 >gi|258448784|ref|ZP_05696896.1| recombination protein MgsA [Staphylococcus aureus A6224] gi|257858062|gb|EEV80951.1| recombination protein MgsA [Staphylococcus aureus A6224] Length = 424 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|223934153|ref|ZP_03626095.1| AAA ATPase central domain protein [Streptococcus suis 89/1591] gi|330833714|ref|YP_004402539.1| AAA ATPase central domain-containing protein [Streptococcus suis ST3] gi|223897175|gb|EEF63594.1| AAA ATPase central domain protein [Streptococcus suis 89/1591] gi|329307937|gb|AEB82353.1| AAA ATPase central domain protein [Streptococcus suis ST3] Length = 428 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++++E GQ K+ A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKSIDEVIGQEHLVGPGKIIRRMIDANM--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + IA+ + L VL +DEIHRL+ ++ L P +E+ Sbjct: 67 FRTFNATTDNQKRLQEIAEEAKFSGGL-------VLMLDEIHRLNKTKQDFLLPLLENGN 119 Query: 134 LDLMVG 139 + +M+G Sbjct: 120 I-IMIG 124 >gi|326336426|ref|ZP_08202596.1| AAA family ATPase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691299|gb|EGD33268.1| AAA family ATPase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 428 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 13/108 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG---------PVIAKAGDLAALLTNLEDRD 107 ++F GPPG GKTTLA ++A+E F S S +I K+ L T Sbjct: 44 LIFWGPPGTGKTTLAYIIAKEGQRTFFSLSAISSGIKEVRDIIEKSKREQGLFT--PKNP 101 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR 153 ++FIDEIHR + ++ L A+E + L+ E PS + LSR Sbjct: 102 IIFIDEIHRFNKTQQDSLLEAVERGWVTLIGATTENPSFEVIPALLSR 149 >gi|258420199|ref|ZP_05683154.1| recombination protein MgsA [Staphylococcus aureus A9719] gi|257843910|gb|EEV68304.1| recombination protein MgsA [Staphylococcus aureus A9719] Length = 424 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|146319767|ref|YP_001199479.1| recombination factor protein RarA [Streptococcus suis 05ZYH33] gi|146321966|ref|YP_001201677.1| recombination factor protein RarA [Streptococcus suis 98HAH33] gi|253752751|ref|YP_003025892.1| ATPase [Streptococcus suis SC84] gi|253754576|ref|YP_003027717.1| ATPase [Streptococcus suis P1/7] gi|145690573|gb|ABP91079.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Streptococcus suis 05ZYH33] gi|145692772|gb|ABP93277.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Streptococcus suis 98HAH33] gi|251817040|emb|CAZ52692.1| putative ATPase [Streptococcus suis SC84] gi|251820822|emb|CAR47588.1| putative ATPase [Streptococcus suis P1/7] gi|292559374|gb|ADE32375.1| putative ATPase [Streptococcus suis GZ1] gi|319759169|gb|ADV71111.1| recombination factor protein RarA [Streptococcus suis JS14] Length = 428 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP++++E GQ K+ A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKSIDEVIGQEHLVGPGKIIRRMIDANM--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR+ + IA+ + L VL +DEIHRL+ ++ L P +E+ Sbjct: 67 FRTFNATTDNQKRLQEIAEEAKFSGGL-------VLLLDEIHRLNKTKQDFLLPLLENGN 119 Query: 134 LDLMVG 139 + +M+G Sbjct: 120 I-IMIG 124 >gi|49483872|ref|YP_041096.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MRSA252] gi|257425751|ref|ZP_05602175.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428411|ref|ZP_05604809.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 65-1322] gi|257431049|ref|ZP_05607428.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 68-397] gi|257433735|ref|ZP_05610093.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus E1410] gi|257436650|ref|ZP_05612694.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus M876] gi|282904207|ref|ZP_06312095.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160] gi|282906033|ref|ZP_06313888.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Btn1260] gi|282908947|ref|ZP_06316765.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911264|ref|ZP_06319066.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914432|ref|ZP_06322218.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899] gi|282919401|ref|ZP_06327136.1| ATPase [Staphylococcus aureus subsp. aureus C427] gi|282924726|ref|ZP_06332394.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C101] gi|283958387|ref|ZP_06375838.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97] gi|293503506|ref|ZP_06667353.1| ATPase [Staphylococcus aureus subsp. aureus 58-424] gi|293510524|ref|ZP_06669230.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp. aureus M809] gi|293531064|ref|ZP_06671746.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015] gi|297590829|ref|ZP_06949467.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8] gi|49242001|emb|CAG40698.1| putative ATPase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271445|gb|EEV03591.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275252|gb|EEV06739.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 65-1322] gi|257278252|gb|EEV08894.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 68-397] gi|257281828|gb|EEV11965.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus E1410] gi|257284001|gb|EEV14124.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus M876] gi|282313561|gb|EFB43956.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C101] gi|282317211|gb|EFB47585.1| ATPase [Staphylococcus aureus subsp. aureus C427] gi|282321613|gb|EFB51938.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899] gi|282324959|gb|EFB55269.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus WBG10049] gi|282327211|gb|EFB57506.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331325|gb|EFB60839.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Btn1260] gi|282595825|gb|EFC00789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160] gi|283790536|gb|EFC29353.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920332|gb|EFD97398.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015] gi|291095172|gb|EFE25437.1| ATPase [Staphylococcus aureus subsp. aureus 58-424] gi|291466888|gb|EFF09408.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp. aureus M809] gi|297575715|gb|EFH94431.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8] gi|312437905|gb|ADQ76976.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH60] gi|315195528|gb|EFU25915.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus CGS00] Length = 424 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|226290033|gb|EEH45517.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb18] Length = 553 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP+TL++ GQ V L+ IE + + ++ G G GKTT+A+V+A+ +G Sbjct: 141 MRPQTLDDVCGQELVGPSGVLRGLIEQDRVPS-----MVLWGGAGTGKTTIARVIAKMVG 195 Query: 80 VNFR--STSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +++ +A+ L A N + +LF DEIHR S +++ +E Q Sbjct: 196 SRFVEINSTNSGVAECKKLFAEARNELSLSGKKTILFCDEIHRFSKSQQDVFLSPVESGQ 255 Query: 134 LDLM--VGEGPSARSVKINLSR---FTL 156 + L+ E PS + LSR FTL Sbjct: 256 ITLIGTTTENPSFKVQNALLSRCRTFTL 283 >gi|225682615|gb|EEH20899.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb03] Length = 553 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP+TL++ GQ V L+ IE + + ++ G G GKTT+A+V+A+ +G Sbjct: 141 MRPQTLDDVCGQELVGPSGVLRGLIEQDRVPS-----MVLWGGAGTGKTTIARVIAKMVG 195 Query: 80 VNFR--STSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +++ +A+ L A N + +LF DEIHR S +++ +E Q Sbjct: 196 SRFVEINSTNSGVAECKKLFAEARNELSLSGKKTILFCDEIHRFSKSQQDVFLSPVESGQ 255 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160 + L+ E PS + LSR FTL T Sbjct: 256 ITLIGTTTENPSFKVQNALLSRCRTFTLSKLT 287 >gi|121707934|ref|XP_001271981.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1] gi|119400129|gb|EAW10555.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1] Length = 539 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 72/154 (46%), Gaps = 18/154 (11%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP+TL+E GQ V L+ IE + + ++ G G GKTT+A+V+A +G Sbjct: 126 MRPQTLDEVCGQELVGPKGVLRGLIEQDR-----VPSMILWGHAGTGKTTIARVIASMVG 180 Query: 80 VNF---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F STS V A + L + ++F DEIHR S +++ +E Q Sbjct: 181 SRFVEINSTSSGVAECKKIFAEARSELNLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 240 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTR 162 + L+ E PS + LSR FTL T R Sbjct: 241 VTLIGATTENPSFKVQNALLSRCRTFTLSKLTDR 274 >gi|282916895|ref|ZP_06324653.1| ATPase [Staphylococcus aureus subsp. aureus D139] gi|283770701|ref|ZP_06343593.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus H19] gi|282319382|gb|EFB49734.1| ATPase [Staphylococcus aureus subsp. aureus D139] gi|283460848|gb|EFC07938.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus H19] Length = 424 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|153840138|ref|ZP_01992805.1| ATPase, AAA family [Vibrio parahaemolyticus AQ3810] gi|149746235|gb|EDM57329.1| ATPase, AAA family [Vibrio parahaemolyticus AQ3810] Length = 423 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 11/148 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+T+ ++ GQ K A +A + ++ GPPG GKTTLA+V A Sbjct: 21 MRPQTIGQYIGQQHILGPGKPLRRALEAGH--VHSMILWGPPGTGKTTLAEVAANYANAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + + R +LF+DE+HR + ++ P +ED + Sbjct: 79 VERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137 Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161 + E PS LSR + T+ Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165 >gi|157103374|ref|XP_001647950.1| werner helicase interacting protein [Aedes aegypti] gi|108884173|gb|EAT48398.1| werner helicase interacting protein [Aedes aegypti] Length = 560 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 22/161 (13%) Query: 14 QEDADISL---LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGK 67 +E ++I L +RP L ++ GQ + L+ E + ++ GPPG GK Sbjct: 131 EEGSNIPLAEKMRPDELSDYIGQEQIIGKNTVLRTLFEK-----NTIPSMILWGPPGCGK 185 Query: 68 TTLAQVVARELG-------VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 TTLA ++A V +T V + +A LA + + ++F+DEIHR + Sbjct: 186 TTLAHIIAAHCKKHGSMKFVKLSATMSGVNDVKEAVKLAKNDLAFKRKTIMFMDEIHRFN 245 Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 + ++I P +E + L+ E PS LSR +I Sbjct: 246 KLQQDIFLPHVESGTITLIGATTENPSFSLNSALLSRCRVI 286 >gi|319400954|gb|EFV89173.1| ATPase family associated with various cellular activities (AAA) family protein [Staphylococcus epidermidis FRI909] Length = 423 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKR--LSSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 FKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|314933792|ref|ZP_07841157.1| ATPase, AAA family [Staphylococcus caprae C87] gi|313653942|gb|EFS17699.1| ATPase, AAA family [Staphylococcus caprae C87] Length = 422 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP ++E Q + + + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPMNIDEIISQQHLVGSKGIIRRMVETKR--LSSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + V D+ ++ + + +L +DEIHRL ++ L P +E+ ++ ++ Sbjct: 66 FKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123 Query: 138 VGEGPSARSVKIN 150 +G S IN Sbjct: 124 IGATTSNPYHAIN 136 >gi|242242900|ref|ZP_04797345.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis W23144] gi|242233675|gb|EES35987.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis W23144] Length = 423 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKR--LSSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 FKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|170744408|ref|YP_001773063.1| recombination factor protein RarA [Methylobacterium sp. 4-46] gi|168198682|gb|ACA20629.1| AAA ATPase central domain protein [Methylobacterium sp. 4-46] Length = 437 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +L E GQ R +L ++ GPPG GKTT+A+++ARE ++ Sbjct: 22 LRPTSLAEVVGQEHLTGEGGALTRLL--RGGSLGSLILWGPPGTGKTTVARLLARETALH 79 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S + + +L + R +LF+DEIHR + + P ED + Sbjct: 80 FEQISA-IFSGVAELRKVFEAARARRAAGQGTLLFVDEIHRFNRAQLDAFLPVTEDGTVT 138 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 139 LVGATTENPS 148 >gi|91775481|ref|YP_545237.1| recombination factor protein RarA [Methylobacillus flagellatus KT] gi|91709468|gb|ABE49396.1| Recombination protein MgsA [Methylobacillus flagellatus KT] Length = 440 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L+E GQ L++ + K L ++ GPPG+GKTTLA+++A Sbjct: 18 LRPKSLDEVVGQRHLLGEGKPLRLAFTSGK-----LPSMILWGPPGVGKTTLARLIANTA 72 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F S V+A D+ + E R +LF+DE+HR + ++ P +E Sbjct: 73 DAEFIPLSA-VLAGIKDIREAVERAEHTLQQSGRRTILFVDEVHRFNKGQQDAFLPFVE 130 >gi|254775881|ref|ZP_05217397.1| recombination factor protein RarA [Mycobacterium avium subsp. avium ATCC 25291] Length = 391 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 30/145 (20%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111 + GPPG GKTTLA ++++ G F + S + A D+ A++ + ++ VLFI Sbjct: 10 ILYGPPGSGKTTLAALISQATGRRFEALSA-LSAGVKDVRAVIESARTALLRGEQTVLFI 68 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNP 169 DE+HR S ++ L A+E+ + L+ E PS F+++A P Sbjct: 69 DEVHRFSKTQQDALLSAVENRVVLLVAATTENPS----------FSVVA----------P 108 Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQR 194 L R I ++L +D++T+V+R Sbjct: 109 LLSRSLI-LQLRPLSADDIRTVVRR 132 >gi|241955893|ref|XP_002420667.1| AAA ATPase family member, putative; replication factor C (RF-C) subunit, putative [Candida dubliniensis CD36] gi|223644009|emb|CAX41749.1| AAA ATPase family member, putative [Candida dubliniensis CD36] Length = 339 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 7/63 (11%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80 RP LEE GQ E ++ F+E K L H+LF GPPG GKT+ +A+E+ + Sbjct: 16 RPDNLEEVKGQQEIVDTVRKFVETRK-----LPHLLFYGPPGTGKTSTIIALAKEIYGSI 70 Query: 81 NFR 83 N++ Sbjct: 71 NYK 73 >gi|21283306|ref|NP_646394.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MW2] gi|49486460|ref|YP_043681.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MSSA476] gi|258424053|ref|ZP_05686935.1| recombination factor protein RarA [Staphylococcus aureus A9635] gi|297207652|ref|ZP_06924087.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911734|ref|ZP_07129177.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70] gi|21204746|dbj|BAB95442.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244903|emb|CAG43364.1| putative ATPase [Staphylococcus aureus subsp. aureus MSSA476] gi|257845674|gb|EEV69706.1| recombination factor protein RarA [Staphylococcus aureus A9635] gi|283470904|emb|CAQ50115.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus ST398] gi|296887669|gb|EFH26567.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885980|gb|EFK81182.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70] gi|329733071|gb|EGG69408.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 21193] Length = 424 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|303244085|ref|ZP_07330423.1| Replication factor C [Methanothermococcus okinawensis IH1] gi|302485470|gb|EFL48396.1| Replication factor C [Methanothermococcus okinawensis IH1] Length = 883 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 14/96 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQVVARELGV 80 RP+TL+E TG E LK ++ + +++ H+LF GPPG+GK T +V+ Sbjct: 10 RPKTLDEITGHDEIIKRLKSYV-----KKKSMPHMLFSGPPGVGKCLTGDTKVIVNNKIE 64 Query: 81 NFRSTSGPVIAKAGD---LAALLTNLEDRDVLFIDE 113 N G ++ K + A L++N +D +VL IDE Sbjct: 65 NL----GDIVEKISNGRFGATLVSNPKDLNVLGIDE 96 >gi|57650509|ref|YP_186522.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus COL] gi|151221741|ref|YP_001332563.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus str. Newman] gi|161353524|ref|YP_500242.2| recombination factor protein RarA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|162138568|ref|YP_494279.2| recombination factor protein RarA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|221141103|ref|ZP_03565596.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253733121|ref|ZP_04867286.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus aureus subsp. aureus TCH130] gi|258450546|ref|ZP_05698608.1| recombination factor protein RarA [Staphylococcus aureus A5948] gi|262048620|ref|ZP_06021503.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30] gi|262051167|ref|ZP_06023391.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3] gi|282920175|ref|ZP_06327900.1| conserved hypothetical AAA domain-containing protein yrvN [Staphylococcus aureus A9765] gi|284024684|ref|ZP_06379082.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 132] gi|304380776|ref|ZP_07363443.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57284695|gb|AAW36789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus COL] gi|150374541|dbj|BAF67801.1| ATPase AAA family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|253728877|gb|EES97606.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus aureus subsp. aureus TCH130] gi|257861704|gb|EEV84503.1| recombination factor protein RarA [Staphylococcus aureus A5948] gi|259160804|gb|EEW45824.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3] gi|259163267|gb|EEW47826.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30] gi|269941113|emb|CBI49499.1| putative ATPase [Staphylococcus aureus subsp. aureus TW20] gi|282594523|gb|EFB99508.1| conserved hypothetical AAA domain-containing protein yrvN [Staphylococcus aureus A9765] gi|302751456|gb|ADL65633.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340652|gb|EFM06585.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198674|gb|EFU29002.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus CGS01] gi|329314302|gb|AEB88715.1| ATPase [Staphylococcus aureus subsp. aureus T0131] gi|329728332|gb|EGG64769.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 21189] Length = 424 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|329724701|gb|EGG61207.1| recombination factor protein RarA [Staphylococcus epidermidis VCU144] Length = 423 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKR--LSSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 FKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|302333301|gb|ADL23494.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus JKD6159] Length = 424 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++ Sbjct: 66 YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124 Query: 139 GEGPSARSVKIN 150 G S IN Sbjct: 125 GATTSNPYHAIN 136 >gi|260945583|ref|XP_002617089.1| hypothetical protein CLUG_02533 [Clavispora lusitaniae ATCC 42720] gi|238848943|gb|EEQ38407.1| hypothetical protein CLUG_02533 [Clavispora lusitaniae ATCC 42720] Length = 548 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 17/153 (11%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 ++RP +L+++ GQ + I + L ++ GPPG+GKTTLA ++A E Sbjct: 22 IIRPSSLKDYVGQEHLIDSDDGAISSFLTLG-ILPSMILYGPPGVGKTTLAHILAAETNH 80 Query: 81 NFRSTSGPVIAKAGDLAALLT-------------NLEDRDVLFIDEIHRLSIIVEEILYP 127 F S + GD+ + +L + V+FIDEIHR S ++ L P Sbjct: 81 VFLELSA-TDSTIGDMREISQAIRQENGKRDRSGDLHLKVVVFIDEIHRFSTTQQDFLLP 139 Query: 128 AME--DFQLDLMVGEGPSARSVKINLSRFTLIA 158 +E DF P R + LSR L + Sbjct: 140 FVEAGDFVFIGATTVNPEKRIRRAILSRCQLFS 172 >gi|313885143|ref|ZP_07818895.1| ATPase, AAA family [Eremococcus coleocola ACS-139-V-Col8] gi|312619834|gb|EFR31271.1| ATPase, AAA family [Eremococcus coleocola ACS-139-V-Col8] Length = 424 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +++ GQ ++ +A L ++ GPPG GKT++A +A Sbjct: 9 MRPQDIDQVLGQEHLVGPGRIIRRMVQANR--LTSMILYGPPGTGKTSIATAIAGTTHYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + +K ++A + +L +DEIHRL+ + ++ L P +E +L +++G Sbjct: 67 FRQLNAATDSKKDLEIAVEEAKMSGTLILLLDEIHRLNKVKQDFLLPHLESGRL-ILIGA 125 Query: 141 GPSARSVKIN 150 + IN Sbjct: 126 TTENPYISIN 135 >gi|145594367|ref|YP_001158664.1| recombination factor protein RarA [Salinispora tropica CNB-440] gi|145303704|gb|ABP54286.1| Recombination protein MgsA [Salinispora tropica CNB-440] Length = 477 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 19/156 (12%) Query: 15 EDADISL-LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +DA +++ +RP L+E GQ + L + A + V+ GPPG GKTT+ Sbjct: 9 DDAPLAVRMRPTGLDELIGQDHLRAPGAPLHQLVSGAAPMS-----VILWGPPGSGKTTI 63 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEE 123 A +VA F + S + A D+ A++ + VLFIDE+HR S ++ Sbjct: 64 AHLVAGATDRRFVAMSA-LNAGVKDVRAVIDAARRQRRAGGPQTVLFIDEVHRFSKTQQD 122 Query: 124 ILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLI 157 L A+ED + L+ E P + LSR L+ Sbjct: 123 SLLAAVEDRTVTLLAATTENPYFSVISPLLSRCVLL 158 >gi|296114938|ref|ZP_06833584.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC 23769] gi|295978496|gb|EFG85228.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC 23769] Length = 466 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 19/148 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + L + + R +L ++ G PG+GKTT+A+++A Sbjct: 54 LRPETLDQVVGQDHLLGPEGTLSLML-----RHHSLASLILWGGPGVGKTTIARLLAHAA 108 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S V + DL R +LF+DEIHR + ++ P +ED Sbjct: 109 GLRFVQISA-VFSGVADLKRAFEEARRRAANGEGTLLFVDEIHRFNRAQQDGFLPVVEDG 167 Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157 + ++VG S +N LSR ++ Sbjct: 168 TV-VLVGATTENPSFALNGALLSRCQVL 194 >gi|324990429|gb|EGC22367.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK353] Length = 422 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ + K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTDIDQIIGQQHLVGSGKIIRRMVEA--NRLSSIILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|144897128|emb|CAM73992.1| Holliday junction resolvasome, helicase subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 52 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 28/34 (82%) Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 ++EPY++QQG IQRTPRGR+L ++H+G++ P Sbjct: 1 MVEPYLLQQGLIQRTPRGRMLSTAGFKHIGLNPP 34 >gi|253996802|ref|YP_003048866.1| recombination factor protein RarA [Methylotenera mobilis JLW8] gi|253983481|gb|ACT48339.1| AAA ATPase central domain protein [Methylotenera mobilis JLW8] Length = 435 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 14/118 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ L+E GQ L++ ++ K L ++ GPPG+GKTTLA+++A Sbjct: 18 LRPKALDEVVGQSHLLGTGKPLRLAFQSGK-----LPSMILWGPPGVGKTTLARLIANTA 72 Query: 79 GVNFRSTSGPV-----IAKAGDLAA-LLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F S + I +A +LA L + +LF+DE+HR + ++ P +E Sbjct: 73 DAEFIPISAVLSGIKDIREAVELAEHTLQQHRRKTILFVDEVHRFNKGQQDAFLPFVE 130 >gi|296111080|ref|YP_003621461.1| chromosome segregation helicase (putative) [Leuconostoc kimchii IMSNU 11154] gi|295832611|gb|ADG40492.1| chromosome segregation helicase (putative) [Leuconostoc kimchii IMSNU 11154] Length = 428 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +E+ GQ K+ A L ++ GPPG GKT++A +A Sbjct: 9 MRPTKIEDIVGQTHLVGEGKIIRRMVDAMR--LSSMILYGPPGTGKTSIASAIAGSSKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + ++ + A + VL +DEIHRL+ + ++ L P +E + L+ Sbjct: 67 FRMLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIHRLNKVKQDFLLPHLESGSIILI--- 123 Query: 141 GPSARSVKINLS 152 G + + IN++ Sbjct: 124 GATTENPYINVT 135 >gi|289192746|ref|YP_003458687.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22] gi|288939196|gb|ADC69951.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22] Length = 515 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP++L+E G + LK +IE+ + E +L VGPPG GKTTLA +A + G Sbjct: 9 RPKSLKEVAGHDKVKEKLKTWIESY-LKGEHPKPILLVGPPGCGKTTLAYALANDYGFEV 67 Query: 83 ------RSTSGPVIAKAGDLAALLTNLEDRDVLFI-DEIHRLS 118 S VI K AA +++ + L I DE+ +S Sbjct: 68 IELNASDKRSASVIKKVVGHAATSSSIFGKKFLIILDEVDGIS 110 >gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3] gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3] Length = 314 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 6/64 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP TL E GQ E LK ++E +++ H+LF G PG+GKTT A +A++L G + Sbjct: 10 RPTTLSEIVGQKEIIERLKNYVEK-----QSMPHLLFSGSPGIGKTTAALCLAKDLYGDD 64 Query: 82 FRST 85 +R Sbjct: 65 WREN 68 >gi|256811408|ref|YP_003128777.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86] gi|256794608|gb|ACV25277.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86] Length = 488 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP++L+E G + LK +IE+ R E +L VGPPG GKTTLA +A + G Sbjct: 9 RPKSLKEVAGHDKVKERLKTWIESY-LRGENPKPILLVGPPGCGKTTLAYALANDYG 64 >gi|225389280|ref|ZP_03759004.1| hypothetical protein CLOSTASPAR_03026 [Clostridium asparagiforme DSM 15981] gi|225044659|gb|EEG54905.1| hypothetical protein CLOSTASPAR_03026 [Clostridium asparagiforme DSM 15981] Length = 438 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 28/130 (21%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALDHV---------LFVGP 62 +DI LL+P+ ++ F GQ EA L V + R A HV L +GP Sbjct: 63 SDIRLLKPKEIKTFLDEYVIGQDEAKKVLSVAVYNHYKRVTACQHVDVDVQKSNILMIGP 122 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------V 108 G GKT LAQ +A+ L V F + +AG D+ +L L D D + Sbjct: 123 TGSGKTYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIARAEYGI 182 Query: 109 LFIDEIHRLS 118 ++IDEI +++ Sbjct: 183 IYIDEIDKIT 192 >gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642] gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642] Length = 321 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+TL+E GQ E LK ++ + + + H+LF GPPG GKT A +AR+L Sbjct: 7 VEKYRPKTLDEVVGQDEIIQRLKSYV-----KQKNIPHLLFAGPPGTGKTATAIALARDL 61 >gi|45185047|ref|NP_982764.1| ABL183Wp [Ashbya gossypii ATCC 10895] gi|44980683|gb|AAS50588.1| ABL183Wp [Ashbya gossypii ATCC 10895] Length = 547 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 17/148 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRPR L E+ GQ S + ++ +L+ GPPG+GKT+LA+++++ + Sbjct: 111 LRPRELREYVGQQHILSQESGALYKYVSQGTIPSMILW-GPPGVGKTSLARLLSKTVNAR 169 Query: 82 FRST-------SGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYP 127 ++ + A A +L + N + VLF+DEIHR + +++L P Sbjct: 170 PQAKITYQLVETSATKANAQELRTVFDNAKKEFRLTKRMTVLFVDEIHRFNKGQQDLLLP 229 Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSR 153 +E + L+ E PS + LSR Sbjct: 230 YVESGGIVLIGATTENPSFQLNNALLSR 257 >gi|227535327|ref|ZP_03965376.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187061|gb|EEI67128.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 423 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ + ++ A L ++ GPPG GKT++A +A Sbjct: 1 MRPQNLDEVVGQQDLVGPDRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 58 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + K + A + +L +DEIHRL ++ L P +E Sbjct: 59 FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLE 108 >gi|254560091|ref|YP_003067186.1| DNA-binding ATP-dependent protease La, induced by heat shock and other stresses [Methylobacterium extorquens DM4] gi|254267369|emb|CAX23204.1| DNA-binding ATP-dependent protease La, induced by heat shock and other stresses [Methylobacterium extorquens DM4] Length = 803 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L Q +AR +G +F R + G V +A G++ + Sbjct: 373 LCFVGPPGVGKTSLGQSIARAMGRSFVRVSLGGVHDEAEIRGHRRTYVGAMPGNIIQAVR 432 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 RD V+ +DEI ++ S + E+L P D +G V +LS Sbjct: 433 KAGARDCVVMLDEIDKMGRGIQGDPSAAMLEVLDPEQNGTFRDNYLG-------VPFDLS 485 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 R IA + + +PL+DR + I L Y ++ I +R Sbjct: 486 RIAFIATANMLDTIPSPLRDRMEV-ISLAGYTEDEKHEIARR 526 >gi|254468300|ref|ZP_05081706.1| AAA ATPase, central region [beta proteobacterium KB13] gi|207087110|gb|EDZ64393.1| AAA ATPase, central region [beta proteobacterium KB13] Length = 429 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 31/199 (15%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +LRP+ +++ GQ + A + L ++ GPPG+GKT++A +A + Sbjct: 11 ILRPKIIDDVIGQDHLLGDDCPIRNAVTSNK--LPSIILWGPPGVGKTSIAYAIANSVNY 68 Query: 81 NFRSTSGPV-----IAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 F S S + I +A D A + + + +LFIDE+HR + ++ P +E+ Sbjct: 69 EFISLSAVLSGVKDIREAVDKANFNKDQNQKKTMLFIDEVHRFNKSQQDAFLPHVEN--- 125 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLL--TNPLQDRFGIPIRLNFYEIEDLKTIV 192 FT I ATT + L R + I LN E LKTI+ Sbjct: 126 -----------------GLFTFIGATTENPSFEVNSALLSRCQVYI-LNSLSNEALKTIL 167 Query: 193 QRGAKLTGLAVTDEAACEI 211 + + DE + E Sbjct: 168 NKALSIQENIKLDEPSTEF 186 >gi|158522144|ref|YP_001530014.1| recombination factor protein RarA [Desulfococcus oleovorans Hxd3] gi|158510970|gb|ABW67937.1| AAA ATPase central domain protein [Desulfococcus oleovorans Hxd3] Length = 459 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 12/145 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE+ GQ + + +A + +L+ GPPG GKTTLA+++A G Sbjct: 23 MRPEKLEDLAGQPH-VTGPDSLLRSALEKGTLFSMILW-GPPGCGKTTLARILAGMTGAA 80 Query: 82 FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 + S V++ ++ ++ + +LF+DE+HR + ++ P +E + Sbjct: 81 YVQISA-VLSGVKEIREVVEAARRRRGEFQKDTILFVDEVHRFNKSQQDAFLPHVESGLV 139 Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157 L+ E PS + +SR LI Sbjct: 140 TLIGATTENPSFEVIPALMSRCRLI 164 >gi|239631709|ref|ZP_04674740.1| recombination factor protein RarA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526174|gb|EEQ65175.1| recombination factor protein RarA [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 423 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ + ++ A L ++ GPPG GKT++A +A Sbjct: 1 MRPQNLDEVVGQQDLVGPDRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 58 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + K + A + +L +DEIHRL ++ L P +E Sbjct: 59 FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLE 108 >gi|82751226|ref|YP_416967.1| recombination factor protein RarA [Staphylococcus aureus RF122] gi|82656757|emb|CAI81186.1| probable ATPase [Staphylococcus aureus RF122] Length = 424 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + V D+ ++ + + +L +DEIHRL ++ L P +E+ ++ ++ Sbjct: 66 YKFRQLNA-VTNTKKDMQFVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123 Query: 138 VGEGPSARSVKIN 150 +G S IN Sbjct: 124 IGATTSNPYHAIN 136 >gi|253732284|ref|ZP_04866449.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724073|gb|EES92802.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 415 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 1 MRPKNIDEIISQQHLVGPKGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQYK 58 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++G Sbjct: 59 FRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLIGA 117 Query: 141 GPSARSVKIN 150 S IN Sbjct: 118 TTSNPYHAIN 127 >gi|156841917|ref|XP_001644329.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM 70294] gi|156114969|gb|EDO16471.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM 70294] Length = 336 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP +L+E GQ E + ++ F+E K L H+LF GPPG GKT+ +A+E+ G N Sbjct: 19 RPTSLDEVYGQNEIVNTVRKFVEEGK-----LPHLLFYGPPGTGKTSTIIALAKEIYGKN 73 Query: 82 FRS 84 + + Sbjct: 74 YHN 76 >gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM 13514] gi|158514158|sp|A4WGV2|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small subunit 1; AltName: Full=Clamp loader small subunit 1 gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514] Length = 329 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 6/65 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPR+ +E E + L+ F+ R + H+LF GPPG GKTT+A V+AREL G Sbjct: 11 RPRSFDEVVDLEEVKARLREFV-----RGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65 Query: 82 FRSTS 86 +R + Sbjct: 66 WRENT 70 >gi|301066249|ref|YP_003788272.1| helicase subunit of the Holliday junction resolvase-like ATPase [Lactobacillus casei str. Zhang] gi|300438656|gb|ADK18422.1| Helicase subunit of the Holliday junction resolvase related ATPase [Lactobacillus casei str. Zhang] Length = 431 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ + ++ A L ++ GPPG GKT++A +A Sbjct: 9 MRPQNLDEVVGQQDLVGPDRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + K + A + +L +DEIHRL ++ L P +E Sbjct: 67 FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLE 116 >gi|191638187|ref|YP_001987353.1| Chromosome segregation helicase (Putative) [Lactobacillus casei BL23] gi|190712489|emb|CAQ66495.1| Chromosome segregation helicase (Putative) [Lactobacillus casei BL23] gi|327382219|gb|AEA53695.1| hypothetical protein LC2W_1361 [Lactobacillus casei LC2W] gi|327385416|gb|AEA56890.1| hypothetical protein LCBD_1393 [Lactobacillus casei BD-II] Length = 431 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+E GQ + ++ A L ++ GPPG GKT++A +A Sbjct: 9 MRPQNLDEVVGQQDLVGPDRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 66 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 FR + K + A + +L +DEIHRL ++ L P +E Sbjct: 67 FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLE 116 >gi|118586592|ref|ZP_01544033.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163] gi|290890861|ref|ZP_06553927.1| hypothetical protein AWRIB429_1317 [Oenococcus oeni AWRIB429] gi|118432971|gb|EAV39696.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163] gi|290479512|gb|EFD88170.1| hypothetical protein AWRIB429_1317 [Oenococcus oeni AWRIB429] Length = 429 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 89/222 (40%), Gaps = 55/222 (24%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +E+ GQ K+ +A L ++ G PG GKT++A +A ++ Sbjct: 10 MRPKKIEDVVGQQHLIGKGKIIWRMVQAHR--LSSMILYGEPGTGKTSIASAIAGSTELS 67 Query: 82 FR----STSGPV----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR +T G +A+ G ++ + +L +DEIHRL ++ L P +E Sbjct: 68 FRILNAATDGKKELQEVAEEGKMSGSV-------ILLLDEIHRLDKTKQDFLLPHLES-- 118 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIE-----D 187 R LI ATT NP L I R + +E D Sbjct: 119 ------------------GRIVLIGATTE-----NPYLSVTPAIRSRTQIFHVEALSEKD 155 Query: 188 LKTIVQRG--AKLTGLA-----VTDEAACEIAMRSRGTPRIA 222 +KT + R K GL + D+A ++ + G R A Sbjct: 156 IKTAINRALSDKENGLGNYNIKLDDQAKNHLSTATNGDLRSA 197 >gi|85373214|ref|YP_457276.1| recombination factor protein RarA [Erythrobacter litoralis HTCC2594] gi|84786297|gb|ABC62479.1| ATPase [Erythrobacter litoralis HTCC2594] Length = 440 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 10/127 (7%) Query: 11 NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 + +EDA ++ LRPR L E GQ E + K I A + VL+ GPPG GKT+ Sbjct: 15 DAPREDAPLADRLRPRALGEVIGQ-EHLTGPKGAIGRMVASGKLSSMVLW-GPPGTGKTS 72 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEE 123 A+++A +G+ F + S V + DL + + +LF+DEIHR + ++ Sbjct: 73 TARLLADAVGMRFVAISA-VFSGVADLKKAFAEADRMAAAGRKTLLFVDEIHRFNRAQQD 131 Query: 124 ILYPAME 130 P +E Sbjct: 132 GFLPFVE 138 >gi|70726294|ref|YP_253208.1| recombination factor protein RarA [Staphylococcus haemolyticus JCSC1435] gi|68447018|dbj|BAE04602.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 422 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP ++E Q + + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPTNIDEIISQQHLVGPRGIIRRMVETKR--LSSMIFYGPPGIGKTSIAKAISGSTD 65 Query: 80 VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + V D+ ++ + + +L +DEIHRL ++ L P +E+ ++ ++ Sbjct: 66 YKFRQLNA-VTNSKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123 Query: 138 VGEGPSARSVKIN 150 +G S IN Sbjct: 124 IGATTSNPYHAIN 136 >gi|330683925|gb|EGG95693.1| recombination factor protein RarA [Staphylococcus epidermidis VCU121] Length = 423 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 4/99 (4%) Query: 54 LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFI 111 L ++F GPPG+GKT++A+ +A FR + V D+ ++ + + +L + Sbjct: 40 LSSMIFYGPPGIGKTSIAKAIAGSTQYKFRQLNA-VTNTKKDMQMVVDEAKMSGQVILLL 98 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 DEIHRL ++ L P +E+ ++ +++G S IN Sbjct: 99 DEIHRLDKAKQDFLLPHLENGKI-VLIGATTSNPYHAIN 136 >gi|119897658|ref|YP_932871.1| recombination factor protein RarA [Azoarcus sp. BH72] gi|119670071|emb|CAL93984.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 445 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 110/273 (40%), Gaps = 49/273 (17%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+E GQ K + A A + +L+ GPPG+GKTTLA+++A+ Sbjct: 19 MRPGTLDEVAGQAHLLGPGKP-LRLAFASGKPHSMILW-GPPGVGKTTLARLMAKGFDAE 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S V + D+ + + +LF+DE+HR + ++ P +E Sbjct: 77 FVALSA-VFSGVKDIREAIVQAQAAKARGRHTILFVDEVHRFNKAQQDAFLPYVEQ---- 131 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194 T I ATT NP + + R Y +E L T + Sbjct: 132 ----------------GLVTFIGATTE-----NPSFEVNSALLSRAAVYVLEPLDTEAMQ 170 Query: 195 G--AKLTGLAVTDEAACEIAMRSR------GTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 G + LA D E A R R G R L+ +++ AE A +T + Sbjct: 171 GLFERARSLACPD-LVFEEAARERMIGFADGDARRLMNLIEQIQVAAETAGVAPVTADFV 229 Query: 247 DAALLR--LAIDKMG---FDQLDLRYLTMIARN 274 D AL R DK G +DQ+ + ++ N Sbjct: 230 DEALSRDLRRFDKGGEAFYDQISALHKSVRGSN 262 >gi|70606692|ref|YP_255562.1| replication factor C large subunit [Sulfolobus acidocaldarius DSM 639] gi|73914010|sp|Q4JAB1|RFCL_SULAC RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|68567340|gb|AAY80269.1| replication factor C [Sulfolobus acidocaldarius DSM 639] Length = 437 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 RP++L+E Q E LK +IE+ VL GPPG+GKTTLA+ +AR+ Sbjct: 10 RPKSLQEVENQDEVKEELKKWIESWLNGEPTAKAVLLYGPPGVGKTTLAEALARD 64 >gi|240276219|gb|EER39731.1| DNA replication ATPase [Ajellomyces capsulatus H143] Length = 547 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 52/263 (19%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPR+L++ GQ V L+ IE + + ++ G G GKTT+A+V+A+ +G Sbjct: 135 MRPRSLDDVYGQELVGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 189 Query: 80 VNFR--STSGPVIAKAGDLAALLTN---LEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +++ +A+ L + N L R ++F DEIHR S +++ +E Q Sbjct: 190 SRFVEINSTNSGVAECKKLFSEAKNELSLSGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 249 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + L+ E PS + LSR FTL T ED+ Sbjct: 250 ITLIGATTENPSFKVQNALLSRCRTFTLAKLTD------------------------EDI 285 Query: 189 KTIVQRGAKLTGLA------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 +I+ R K+ G V DE +A + G R + LL D ++ + +T Sbjct: 286 VSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMD---LSRREGMT 342 Query: 243 REIADAALLR-LAIDKMGFDQLD 264 RE +L R L D+ G D Sbjct: 343 REDLKKSLTRTLVYDRAGDQHYD 365 >gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis] Length = 329 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP TL++ GQ + ++ F+ + L H+LF GPPG GKT+ +ARE+ Sbjct: 11 IEKYRPETLDDVYGQQNVVNTVRKFLHEGR-----LPHLLFYGPPGTGKTSTIVALAREI 65 Query: 79 -GVNFRS 84 G N+R+ Sbjct: 66 YGSNYRN 72 >gi|260906747|ref|ZP_05915069.1| recombination factor protein RarA [Brevibacterium linens BL2] Length = 421 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 14/137 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +LE+ GQ + +A R A L ++ GPPG GKTT+A+++A Sbjct: 15 LRPESLEDVIGQDHLLGD-----DAPIGRMVAERRLVSMVLWGPPGCGKTTIARLLAERT 69 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + F S S + K AA + +LF+DEIHR + ++ P +ED Sbjct: 70 NLVFESVSATFSGVAELRKVFQSAAKRREIGQGTMLFVDEIHRFNRAQQDSFLPYVEDGT 129 Query: 134 LDLMVGEGPSARSVKIN 150 + ++VG S ++N Sbjct: 130 I-VLVGATTENPSFELN 145 >gi|224002178|ref|XP_002290761.1| transitional endoplasmic reticulum [Thalassiosira pseudonana CCMP1335] gi|220974183|gb|EED92513.1| transitional endoplasmic reticulum [Thalassiosira pseudonana CCMP1335] Length = 818 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E VNF S GP + G A + N+ D+ + Sbjct: 531 VLFYGPPGCGKTLLAKAIANECQVNFISVKGPELLNMWFGQSEANVRNVFDKARQAAPCI 590 Query: 109 LFIDEIHRLS 118 LF DE+ +S Sbjct: 591 LFFDELDSIS 600 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 22/38 (57%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 VL GPPG GKT +A+ +A E G F +GP I G Sbjct: 250 VLLYGPPGSGKTLIARAIANETGAFFYLINGPEIMSKG 287 >gi|315222482|ref|ZP_07864380.1| recombination factor protein RarA [Streptococcus anginosus F0211] gi|315188450|gb|EFU22167.1| recombination factor protein RarA [Streptococcus anginosus F0211] Length = 423 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ + + GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPKNINQVIGQKHLVGEGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L +L +DEIHRL ++ L P +E+ L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----MLLLDEIHRLDKTKQDFLLPLLEN-GLII 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|299066065|emb|CBJ37246.1| Replication-associated recombination protein A [Ralstonia solanacearum CMR15] Length = 449 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +++E GQ K + A A E +L+ GPPG+GKTTLA+++A Sbjct: 20 LRPHSVDEVIGQQHLLGPSKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V++ D+ + E R ++F+DE+HR + ++ P +E Sbjct: 78 FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 131 >gi|257126269|ref|YP_003164383.1| recombination factor protein RarA [Leptotrichia buccalis C-1013-b] gi|257050208|gb|ACV39392.1| AAA ATPase central domain protein [Leptotrichia buccalis C-1013-b] Length = 409 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 24/172 (13%) Query: 23 RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP++L++F GQ V L+ IE R ++ +F G PG GKTTLA++++ ++ Sbjct: 19 RPKSLDDFYGQKRLVGENGILRKIIE----RGNFMN-AIFWGAPGTGKTTLAEIISNKMN 73 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDF 132 ++ + + A D+ + +R +LF+DEIHR + + ++ L +E+ Sbjct: 74 YHYEYLNA-IKASVADIKEISEKAANRFHMNGQQTLLFLDEIHRFNKLQQDSLLQDLENG 132 Query: 133 QLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTN-PLQDRFGI 176 + L+ E P LSR F ++ + +L N ++ FGI Sbjct: 133 NIILIGATTENPYYNLNNALLSRCLAFEFKKLSEKNLMEILKNINEKENFGI 184 >gi|87202996|gb|ABD30806.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|320140486|gb|EFW32340.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MRSA131] gi|320144025|gb|EFW35794.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MRSA177] Length = 415 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 1 MRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQYK 58 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++G Sbjct: 59 FRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLIGA 117 Query: 141 GPSARSVKIN 150 S IN Sbjct: 118 TTSNPYHAIN 127 >gi|325089916|gb|EGC43226.1| DNA replication ATPase [Ajellomyces capsulatus H88] Length = 547 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 52/263 (19%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPR+L++ GQ V L+ IE + + ++ G G GKTT+A+V+A+ +G Sbjct: 135 MRPRSLDDVYGQELVGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 189 Query: 80 VNFR--STSGPVIAKAGDLAALLTN---LEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +++ +A+ L + N L R ++F DEIHR S +++ +E Q Sbjct: 190 SRFVEINSTNSGVAECKKLFSEAKNELSLSGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 249 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + L+ E PS + LSR FTL T ED+ Sbjct: 250 ITLIGATTENPSFKVQNALLSRCRTFTLAKLTD------------------------EDI 285 Query: 189 KTIVQRGAKLTGLA------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 +I+ R K+ G V DE +A + G R + LL D ++ + +T Sbjct: 286 VSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMD---LSRREGMT 342 Query: 243 REIADAALLR-LAIDKMGFDQLD 264 RE +L R L D+ G D Sbjct: 343 REDLKKSLTRTLVYDRAGDQHYD 365 >gi|298694907|gb|ADI98129.1| probable ATPase [Staphylococcus aureus subsp. aureus ED133] gi|323440819|gb|EGA98528.1| recombination factor protein RarA [Staphylococcus aureus O11] gi|323442832|gb|EGB00457.1| recombination factor protein RarA [Staphylococcus aureus O46] Length = 415 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 1 MRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQYK 58 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 FR + K L + + +L +DEIHRL ++ L P +E+ ++ +++G Sbjct: 59 FRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLIGA 117 Query: 141 GPSARSVKIN 150 S IN Sbjct: 118 TTSNPYHAIN 127 >gi|307596342|ref|YP_003902659.1| Replication factor C [Vulcanisaeta distributa DSM 14429] gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429] Length = 342 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 102/243 (41%), Gaps = 48/243 (19%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP +++ Q E +K F++ + H+LF GPPG GKTT+A +AREL Sbjct: 9 VEKYRPSRIDDIIDQEEVKERIKQFLKTGN-----MPHMLFYGPPGTGKTTMALAIAREL 63 Query: 79 -GVNFRSTSGPVIAKAGDLAALLTNLEDR---------------DVLFIDEIHRLSIIVE 122 G +R V+ +T + +R ++ +DE ++ + Sbjct: 64 YGDAWREN---VLELNASDERGITTIRERVKEFARTAPMGKAPYKLVILDEADNMTSDAQ 120 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 + L ME + N++RF LIA V + +P+Q R + R + Sbjct: 121 QALRRMMEMYA----------------NVTRFILIA--NYVSRIIDPIQSRCAM-FRFSP 161 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 + + ++ A G+ VT+EA I S+G R A L+ A A AK IT Sbjct: 162 LPKDAVLGRLREIASKEGVKVTNEALEAIWDVSQGDMRKAINTLQ-----AAAATAKEIT 216 Query: 243 REI 245 E+ Sbjct: 217 PEV 219 >gi|302773279|ref|XP_002970057.1| hypothetical protein SELMODRAFT_231444 [Selaginella moellendorffii] gi|300162568|gb|EFJ29181.1| hypothetical protein SELMODRAFT_231444 [Selaginella moellendorffii] Length = 411 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 16/159 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP ++ GQ LK +E ++L V+F GPPG GKTTLA+ +A + Sbjct: 1 MRPTSVNAILGQDHLLGPRGILKSLLEG-----DSLASVIFWGPPGTGKTTLARAIASTV 55 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S V + ++ +L + R +LF+DE+HR + ++ P +E Sbjct: 56 SYRFVALSA-VTSGVKEVREVLEEAKKAKKYGQRTLLFLDEVHRFNKAQQDAFLPYVEAG 114 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171 + + VG S +IN + + T LL L+ Sbjct: 115 HV-VFVGATTENPSFEINAALLSRCKVLTMNKLLPEHLE 152 >gi|56964400|ref|YP_176131.1| ATP-dependent Lon protease [Bacillus clausii KSM-K16] gi|56910643|dbj|BAD65170.1| ATP-dependent Lon protease [Bacillus clausii KSM-K16] Length = 555 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 92/239 (38%), Gaps = 53/239 (22%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV----ARE 77 +RP+ L E GQ + L++ + + HV+ GPPG+GKT A++V R+ Sbjct: 63 VRPKHLSEVVGQEDGLKTLRMALCGPNPQ-----HVIIYGPPGVGKTAAARLVLDEAKRQ 117 Query: 78 LGVNFRSTSG--------------------------PVIAKAGDLAAL--------LTNL 103 FRST+ P+ AG + Sbjct: 118 ADSPFRSTAAFVELDGATSRFDERGIADPLIGSVHDPIYQGAGSMGQAGIPQPKPGAVTK 177 Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS---------VKINL-SR 153 +LFIDEI L I + L +ED ++ L S K L + Sbjct: 178 AHGGILFIDEIGELHTIQQNKLLKVLEDRKVFLESAYYSSENEQIPSHIHDIFKRGLPAD 237 Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212 F L+AATTR P + + + +++ I +R A G+A+T EAA ++A Sbjct: 238 FRLVAATTRQPEEMPPAIRSRCLEVFFRALDPDEIVEIAKRAADKAGMALTSEAAKKVA 296 >gi|221115745|ref|XP_002160777.1| PREDICTED: similar to Werner helicase interacting protein 1 [Hydra magnipapillata] Length = 527 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/275 (24%), Positives = 109/275 (39%), Gaps = 58/275 (21%) Query: 22 LRPRTLEEFTGQVE-ACSNL--KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76 +RP + F GQ NL ++F+ + + ++ GPPG GKT+ A +++R Sbjct: 115 MRPNNFDNFYGQNSFGAKNLLKELFV------SNKIPSLILWGPPGCGKTSFAHIISRRC 168 Query: 77 -ELGVNFR----STSGPVIAKAGDLAALLTNLED----RDVLFIDEIHRLSIIVEEILYP 127 E +R S + I D + N + + VLFIDEIHR + + ++ P Sbjct: 169 KESDSKYRFVTLSATMAGINDVKDEIKVAKNEKKLTSRKTVLFIDEIHRFNKMQQDTFLP 228 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185 +ED LI ATT + N L R + + N E Sbjct: 229 YVED--------------------GTIVLIGATTENPSFYINNALISRCHV-VVFNSLET 267 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACE--------IAMRSRGTPRIA----GRLLRRVRDFA 233 E + I+Q +L + A C +A + G R A +L+ ++ Sbjct: 268 EVILKILQNAIELLNETDQEVAKCRFEEGALNLVAQYANGDARCALNKLDMILQAKKESI 327 Query: 234 EVAHAKT-ITREIADAALLRLAI--DKMGFDQLDL 265 V+ A + I+ E+ L R + DK G + +L Sbjct: 328 HVSQANSQISCELIREELQRCCVNYDKAGDEHYNL 362 >gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM 13514] gi|158514167|sp|A4WLY0|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small subunit 2; AltName: Full=Clamp loader small subunit 2 gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM 13514] Length = 322 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR+ +E E + L+ F+ R + H+LF GPPG GKTT+A V+AREL Sbjct: 11 RPRSFDEVVDLEEVKARLREFV-----RGGNMPHLLFYGPPGTGKTTMALVLAREL 61 >gi|52841991|ref|YP_095790.1| recombination factor protein RarA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148359308|ref|YP_001250515.1| chromosome architecture ATPase [Legionella pneumophila str. Corby] gi|296107355|ref|YP_003619055.1| ATPase associated with chromosome architecture [Legionella pneumophila 2300/99 Alcoy] gi|52629102|gb|AAU27843.1| ATPase associated with chromosome architecture [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148281081|gb|ABQ55169.1| ATPase associated with chromosome architecture [Legionella pneumophila str. Corby] gi|295649256|gb|ADG25103.1| ATPase associated with chromosome architecture [Legionella pneumophila 2300/99 Alcoy] gi|307610463|emb|CBX00034.1| hypothetical protein LPW_17901 [Legionella pneumophila 130b] Length = 434 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ ++E GQ L++ +K L ++ GPPG+GKTT+A++ A+ Sbjct: 16 LRPQHIDEVIGQSHLLGEGKPLRLCFMGSK-----LHSMILWGPPGVGKTTIARLTAQAF 70 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 + + S V + D+ A + ++ + +LFIDEIHR + ++ L P E Sbjct: 71 DCEWIALSA-VFSGVKDIRAAVEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTE 127 >gi|225559886|gb|EEH08168.1| DNA replication ATPase [Ajellomyces capsulatus G186AR] gi|225559936|gb|EEH08218.1| DNA replication ATPase [Ajellomyces capsulatus G186AR] Length = 547 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 52/263 (19%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPR+L++ GQ V L+ IE + + ++ G G GKTT+A+V+A+ +G Sbjct: 135 MRPRSLDDVYGQELVGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 189 Query: 80 VNFR--STSGPVIAKAGDLAALLTN---LEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +++ +A+ L + N L R ++F DEIHR S +++ +E Q Sbjct: 190 SRFVEINSTNSGVAECKKLFSEAKNELSLSGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 249 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + L+ E PS + LSR FTL T ED+ Sbjct: 250 ITLIGATTENPSFKVQNALLSRCRTFTLAKLTD------------------------EDI 285 Query: 189 KTIVQRGAKLTGLA------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 +I+ R K+ G V DE +A + G R + LL D ++ + +T Sbjct: 286 VSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMD---LSRREGMT 342 Query: 243 REIADAALLR-LAIDKMGFDQLD 264 RE +L R L D+ G D Sbjct: 343 REDLKKSLTRTLVYDRAGDQHYD 365 >gi|119500324|ref|XP_001266919.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181] gi|119415084|gb|EAW25022.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181] Length = 539 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPRTL+E GQ N L+ IE + + ++ G G GKTT+A+V+A +G Sbjct: 126 MRPRTLDEVCGQELVGPNGVLRGLIEQDRVPS-----MILWGHAGTGKTTIARVIASMVG 180 Query: 80 VNF---RSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F STS V A + L + ++F DEIHR S +++ +E Q Sbjct: 181 SRFVEINSTSTGVAECKKIFAEARSELGLTGRKTIVFCDEIHRFSKSQQDVFLGPVESGQ 240 Query: 134 LDLM--VGEGPSARSVKINLSR---FTL 156 + L+ E PS + LSR FTL Sbjct: 241 ITLIGATTENPSFKVQNALLSRCRTFTL 268 >gi|30249052|ref|NP_841122.1| recombination factor protein RarA [Nitrosomonas europaea ATCC 19718] gi|30138669|emb|CAD84964.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Nitrosomonas europaea ATCC 19718] Length = 439 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 18/149 (12%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL++ GQ L++ E+ K + ++ GPPG GKTTLA+++A Sbjct: 19 LRPRTLDDVVGQSHLLGPGKPLRLAFESGKPHS-----MILWGPPGSGKTTLARLMAHAF 73 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILYPAMEDF 132 F + S + I +A + A + R +LF+DE+HR + ++ P +E Sbjct: 74 DAEFIAISAVLSGVKDIREAIERAQITLQRTGRATLLFVDEVHRFNKAQQDAFLPHVEQ- 132 Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLIA 158 L +G S ++N LSR + A Sbjct: 133 GLITFIGATTENPSFEVNGALLSRAQVYA 161 >gi|145299386|ref|YP_001142227.1| recombination factor protein RarA [Aeromonas salmonicida subsp. salmonicida A449] gi|142852158|gb|ABO90479.1| ATPase, AAA family [Aeromonas salmonicida subsp. salmonicida A449] Length = 447 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L+++ GQ K +A A ++ GPPG GKTTLA+++A Sbjct: 21 MRPQDLDQYIGQQHILGPDKPLRKAI--LAGHCHSMILWGPPGTGKTTLAELMAHYCQAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 S V + ++ A + ++ R +LF+DE+HR + +++ P +ED + Sbjct: 79 VERLSA-VTSGIKEIRAAIDKAKENSWRGVRTILFVDEVHRFNKSQQDVFLPHIEDGTIT 137 Query: 136 LM--VGEGPSARSVKINLSR 153 + E PS LSR Sbjct: 138 FIGATTENPSFELNNALLSR 157 >gi|17547057|ref|NP_520459.1| recombination factor protein RarA [Ralstonia solanacearum GMI1000] gi|17429358|emb|CAD16045.1| putative atpase related to the helicase subunit of the holliday junction resolvase protein [Ralstonia solanacearum GMI1000] Length = 449 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +++E GQ K + A A E +L+ GPPG+GKTTLA+++A Sbjct: 20 LRPHSVDEVIGQQHLLGPSKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V++ D+ + E R ++F+DE+HR + ++ P +E Sbjct: 78 FIALSA-VLSGVKDIRDAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 131 >gi|310658800|ref|YP_003936521.1| helicase associated protein [Clostridium sticklandii DSM 519] gi|308825578|emb|CBH21616.1| putative helicase associated protein (ATPase, AAA family) [Clostridium sticklandii] Length = 418 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 10/140 (7%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 ++RP+ ++E GQ V A + + +++F GPPG+GKT++A ++A Sbjct: 8 IVRPKKIDEIVGQEHLTGTDGVLYRAIENNI--IPNMIFYGPPGVGKTSVANIIANSCNK 65 Query: 81 NFRSTSGPVIAKAGDLAALLTN-----LEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133 + + K ++ +L + L+ +++++IDEI + ++IL +E D Sbjct: 66 SIHMLNA-TYTKTEEVKEILKDSKLQTLDSKEIIYIDEIQNFNKKQQQILLDYIEKGDIV 124 Query: 134 LDLMVGEGPSARSVKINLSR 153 L E P K LSR Sbjct: 125 LIASTTENPYHYVYKALLSR 144 >gi|260888719|ref|ZP_05899982.1| ATP-dependent protease, Lon family [Selenomonas sputigena ATCC 35185] gi|330839879|ref|YP_004414459.1| anti-sigma H sporulation factor, LonB [Selenomonas sputigena ATCC 35185] gi|260861472|gb|EEX75972.1| ATP-dependent protease, Lon family [Selenomonas sputigena ATCC 35185] gi|329747643|gb|AEC01000.1| anti-sigma H sporulation factor, LonB [Selenomonas sputigena ATCC 35185] Length = 684 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 + LLRP+TLEE GQ A L A+K + H+L GPPG+GKTT A++V Sbjct: 172 MELLRPKTLEEVVGQERAVKAL-----ASKLASPYPQHLLLYGPPGVGKTTAARIV 222 >gi|84685387|ref|ZP_01013285.1| ATPase, AAA family protein [Maritimibacter alkaliphilus HTCC2654] gi|84666544|gb|EAQ13016.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2654] Length = 436 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%) Query: 22 LRPRTLEEFTGQVEAC----SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LRP L++ GQ EA L V + + +L ++ GPPG+GKTT+A+++A Sbjct: 24 LRPAALDQVIGQ-EAVLGPEGPLGVMLASG-----SLGSLILWGPPGVGKTTIARLLADV 77 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131 ++F S + DL + + R +LF+DEIHR + ++ P MED Sbjct: 78 TDLHFIQISA-IFTGVTDLRKVFEAAKMRRQNGKGTLLFVDEIHRFNKAQQDGFLPHMED 136 Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLI 157 + L+VG S ++N LSR +I Sbjct: 137 GTI-LLVGATTENPSFELNAAVLSRAQVI 164 >gi|47458682|gb|AAT28003.1| ATPase [Mycoplasma mobile 163K] Length = 372 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 14/132 (10%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 +F G G+GKTT A V+A+E ++ P I +L L L +L IDE+HRL Sbjct: 5 IFYGESGIGKTTAATVIAKEKQESY-DVFNPTIHSKKEL---LEKLAINKILIIDELHRL 60 Query: 118 SIIVEEILYPAMEDFQLDLMVGEG--------PSARSVKINLSRFTLIAATTRVGLLTNP 169 + +EIL +ED ++ L PS RS ++ + RF ++ T L N Sbjct: 61 NKDKQEILLSYLEDDKIILYATTTENPYFKIIPSLRS-RLKILRFNKLSETEIFQGLKNI 119 Query: 170 LQDRFGIPIRLN 181 ++ ++ + I++N Sbjct: 120 IE-KYKLKIKIN 130 >gi|182418907|ref|ZP_02950164.1| ATPase, AAA family [Clostridium butyricum 5521] gi|237668598|ref|ZP_04528582.1| AAA ATPase, central domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377190|gb|EDT74758.1| ATPase, AAA family [Clostridium butyricum 5521] gi|237656946|gb|EEP54502.1| AAA ATPase, central domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 103 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 8/99 (8%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP +L++F GQ S K K++ + + +F GPPG GKTTLA ++A + Sbjct: 7 LMRPSSLDDFVGQKHIMSQGKPLYNLIKSKN--ICNCIFYGPPGTGKTTLANIMANYVDK 64 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDR-----DVLFIDEI 114 F + A D+ + NL+ VL+IDE+ Sbjct: 65 KFYKLNA-TTASVKDIQDITNNLDSLLSYSGVVLYIDEL 102 >gi|261403496|ref|YP_003247720.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] gi|261370489|gb|ACX73238.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] Length = 509 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RPR+L++ G + LK +IE+ + E +L VGPPG GKTTLA +A + Sbjct: 5 VEKYRPRSLKDVAGHEKVKEKLKTWIESY-LKGENPKPILLVGPPGCGKTTLAYALANDY 63 Query: 79 G 79 G Sbjct: 64 G 64 >gi|269859412|ref|XP_002649431.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348] gi|220067194|gb|EED44661.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348] Length = 778 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 14/171 (8%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL GPPG GKT LA+ VA E NF S GP +++K GD + + L D+ V Sbjct: 522 VLLYGPPGCGKTLLAKAVATECKANFISIKGPELLSKWVGDSESNVRELFDKARGSAPCV 581 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 LF DEI + + ++ + + D M+ + + ++ AT R GLL + Sbjct: 582 LFFDEIDSVG---KSRMHASNDGGTTDRMLNQILTEMDGMNQKKNVFVMGATNRPGLLDS 638 Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQ-RGAKLTGLAVTDEAACE-IAMRSRG 217 L R G +L + + DLK+ ++ KL+ ++ + + E IA R+ G Sbjct: 639 ALM-RPGRLDQLVYIPLPDLKSRIKILETKLSKTPLSKDVSIENIAKRTEG 688 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108 +L GPPG GKT +A+ +A E+G +GP I +G+ + L N + + Sbjct: 249 ILLHGPPGTGKTQIARAIANEIGAYLLIINGPEIMSKMSGESESNLRKAFEEANKKQPSI 308 Query: 109 LFIDEIHRLS 118 +F+DEI ++ Sbjct: 309 IFMDEIDSIA 318 >gi|223044087|ref|ZP_03614126.1| ATPase, AAA family [Staphylococcus capitis SK14] gi|222442481|gb|EEE48587.1| ATPase, AAA family [Staphylococcus capitis SK14] Length = 425 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 7/142 (4%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 NVS E S +RP ++E Q + + + L ++F GPPG+GKT++ Sbjct: 3 NVSTEPL-ASRMRPMNIDEIISQQHLVGPKGIIRRMVETKR--LSSMIFYGPPGIGKTSI 59 Query: 71 AQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPA 128 A+ ++ FR + V D+ ++ + + +L +DEIHRL ++ L P Sbjct: 60 AKAISGSTQFKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPH 118 Query: 129 MEDFQLDLMVGEGPSARSVKIN 150 +E+ ++ +++G S IN Sbjct: 119 LENGKI-VLIGATTSNPYHAIN 139 >gi|91789641|ref|YP_550593.1| recombination factor protein RarA [Polaromonas sp. JS666] gi|91698866|gb|ABE45695.1| Recombination protein MgsA [Polaromonas sp. JS666] Length = 427 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 16/143 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L E GQ L++ E+ + + + GPPG+GKTTLA+++A Sbjct: 9 LRPKSLGEVIGQQHLLGEGMPLRIAFESGQPHS-----CILWGPPGVGKTTLARLMASSF 63 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMED- 131 +F + S + I +A + A++ R ++F+DE+HR + ++ P +E Sbjct: 64 DAHFITISAVLGGVKDIREAVEQASIWQGQGGRRTIVFVDEVHRFNKSQQDAFLPHVESG 123 Query: 132 -FQLDLMVGEGPSARSVKINLSR 153 F E PS LSR Sbjct: 124 LFTFIGATTENPSFEVNSALLSR 146 >gi|260220658|emb|CBA28419.1| Replication-associated recombination protein A [Curvibacter putative symbiont of Hydra magnipapillata] Length = 431 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 23/148 (15%) Query: 21 LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP+TL E GQ L++ E+ + + + GPPG+GKTT+A+++A Sbjct: 14 LLRPKTLGEVIGQQHLLGEGMALRLAFESGQPHS-----CILWGPPGVGKTTIARLMADA 68 Query: 78 LGVNFRSTSGPV-----IAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYP 127 F + S + I +A D A N D R ++F+DE+HR + ++ P Sbjct: 69 FDAQFITISAVLGGIKEIREAVDQA---LNARDGLEQRRTIIFVDEVHRFNKSQQDAFLP 125 Query: 128 AMED--FQLDLMVGEGPSARSVKINLSR 153 +E F E PS LSR Sbjct: 126 HVESGLFTFIGATTENPSFEVNSALLSR 153 >gi|94264493|ref|ZP_01288280.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium MLMS-1] gi|93455052|gb|EAT05279.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium MLMS-1] Length = 809 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 125/289 (43%), Gaps = 68/289 (23%) Query: 46 AAKARAEALDH--VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------- 93 A KA+ + L + VGPPG+GKT++ + VAR + NF R + G V +A Sbjct: 339 AVKAQVDKLKGPILCLVGPPGVGKTSICKSVARAMDRNFVRLSLGGVRDEAEIRGHRRTY 398 Query: 94 -GDL-AALLTNLED----RDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLD 135 G + +L +++ VL +DE+ ++S+ + E+L P + D LD Sbjct: 399 IGAMPGKILRSMQQAKVVNPVLCLDEVDKMSMDFRGDPSAALLEVLDPEQNHSFSDHYLD 458 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193 L + +LS I + + PLQDR I I++N Y ED I Q Sbjct: 459 L-----------EYDLSGVFFITTANSLAGIPAPLQDRMEI-IQINGYTEEDKVNIAQGF 506 Query: 194 ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 R + G A D + A+R L+RR + A + + R IA + Sbjct: 507 LAPRQLEANGFAAGDILFTDPALRE---------LIRR---YTREAGVRNLERAIA-SIC 553 Query: 251 LRLAIDKMGFDQLDLRY-LT--MIARNFGGGPVGIETISAGLSEPRDAI 296 +LA ++ Q D RY LT +AR+ G+ GL+E +D + Sbjct: 554 RKLARHRLKKQQRDKRYRLTPAAVARHL-----GVAKYRYGLAEEQDRV 597 >gi|121606099|ref|YP_983428.1| recombination factor protein RarA [Polaromonas naphthalenivorans CJ2] gi|120595068|gb|ABM38507.1| Recombination protein MgsA [Polaromonas naphthalenivorans CJ2] Length = 432 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 45/247 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ L E GQ L++ E+ + + + GPPG+GKTT+A+++A Sbjct: 14 LRPKNLGEVIGQQHLLGEGLPLRIAFESGEPHS-----CILWGPPGVGKTTIARLMASSF 68 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMED- 131 +F + S + I +A + A + R ++F+DE+HR + ++ P +E Sbjct: 69 DAHFITISAVLGGVKDIREAVEQATIWQGQGGRRTIVFVDEVHRFNKSQQDAFLPHVESG 128 Query: 132 -FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 F E PS LSR + + PL + +DLK Sbjct: 129 LFTFIGATTENPSFEVNSALLSRAVV--------YVLQPLTE-------------DDLKQ 167 Query: 191 IVQRGAKLTGLAVTDEAACEIAMR----SRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 I+ R L + A E R + G R RLL + + A A+ IT + Sbjct: 168 IIARVLSERALPAIETIAVEAVDRLVAYADGDAR---RLLNTLESLSVAARAEKIT-GVT 223 Query: 247 DAALLRL 253 DA LL++ Sbjct: 224 DAWLLKV 230 >gi|73662441|ref|YP_301222.1| recombination factor protein RarA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494956|dbj|BAE18277.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 427 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 12/136 (8%) Query: 20 SLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S +RP ++E Q V ++ +E + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPNNIDEIISQEHLVGPKGIIRRMVETKR-----LSSMIFYGPPGIGKTSIAKAISG 62 Query: 77 ELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 FR + V D+ ++ + + +L +DEIHRL ++ L P +E+ ++ Sbjct: 63 STQFKFRQLNA-VTNTKKDMQLIVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI 121 Query: 135 DLMVGEGPSARSVKIN 150 +++G S IN Sbjct: 122 -VLIGATTSNPYHAIN 136 >gi|307130789|ref|YP_003882805.1| recombination protein [Dickeya dadantii 3937] gi|306528318|gb|ADM98248.1| recombination protein [Dickeya dadantii 3937] Length = 447 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP L ++ GQ K A +A L ++ GPPG GKTTLA+++ R + Sbjct: 20 MRPAKLAQYIGQQHLLGPGKPLPRAIEA--GQLHSMILWGPPGTGKTTLAELIGRYGQAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|255554761|ref|XP_002518418.1| 26S protease regulatory subunit, putative [Ricinus communis] gi|223542263|gb|EEF43805.1| 26S protease regulatory subunit, putative [Ricinus communis] Length = 587 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 21/200 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107 VLF GPPG GKT+ A+V+A + GV V+ G + AL L + Sbjct: 350 VLFEGPPGTGKTSCARVIATQAGVPLLYVPLEVVMSKYYGESEKLLGKVFALANELPNGA 409 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++F+DE+ ++ + ++ A L +++ + K + +IAAT R L Sbjct: 410 IIFLDEVDSFAVARDNEMHEATRRI-LSVLLRQIDGFEQDK----KVVVIAATNRKQDLD 464 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 L RF I + ++ + IV + AK + +E A + T +++GR ++ Sbjct: 465 PALISRFDSMITFGLPDEQNRQEIVAQYAKHLKRSDIEELA-------KVTDQMSGRDIK 517 Query: 228 RVRDFAEVAHAKTITREIAD 247 V AE + A I R AD Sbjct: 518 DVCQQAERSWASKIIRGKAD 537 >gi|301060534|ref|ZP_07201374.1| endopeptidase La [delta proteobacterium NaphS2] gi|300445377|gb|EFK09302.1| endopeptidase La [delta proteobacterium NaphS2] Length = 819 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 57/223 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+LA+ VAR G N+ R + G V +A G + L Sbjct: 362 LCLVGPPGVGKTSLAKSVARATGRNYVRLSLGGVRDEAEIRGHRRTYIGALPGKIIQFLK 421 Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 + + +F +DE+ ++S + E+L P A D LDL Sbjct: 422 KAKTSNPVFCLDEVDKMSTDFRGDPSAALLEVLDPEQNVAFNDHYLDL-----------D 470 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAV 203 +LS I + + PLQDR I IRL Y EIE L + +V++ +L GL++ Sbjct: 471 YDLSDIFFITTANNLHNIPGPLQDRMEI-IRLPGYTEIEKLNIAKQFLVKKQIELNGLSL 529 Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 + A + A +L +R + A + + REI+ Sbjct: 530 ENVAFTDKA------------ILTIIRTYTSEAGVRNLEREIS 560 >gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus gammatolerans EJ3] gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus gammatolerans EJ3] Length = 333 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+ L++ GQ LK + A+ ++ H+LF GPPG GKT+ A +AREL Sbjct: 19 VEKYRPQRLDDIVGQEHIVKRLKHY-----AKTGSMPHLLFAGPPGTGKTSAALALAREL 73 Query: 79 -GVNFRST 85 G N+R Sbjct: 74 FGENWRHN 81 >gi|329114603|ref|ZP_08243362.1| Replication-associated recombination protein A [Acetobacter pomorum DM001] gi|326696083|gb|EGE47765.1| Replication-associated recombination protein A [Acetobacter pomorum DM001] Length = 453 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 19/148 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ LE+ GQ E A R +L ++ G PG+GKTT+A+++A+ Sbjct: 43 LRPQRLEDVVGQAHLLGP-----EGALTRMLERGSLASLILWGGPGVGKTTIARLLAQAA 97 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S V + DL N + +LF+DEIHR + ++ P +ED Sbjct: 98 GLKFVQLSA-VFSGVADLKKAFENARRQAEAGGGTLLFVDEIHRFNRAQQDGFLPVVEDG 156 Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157 + ++VG S +N LSR ++ Sbjct: 157 TV-VLVGATTENPSFALNSALLSRCQVM 183 >gi|94266599|ref|ZP_01290281.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium MLMS-1] gi|93452770|gb|EAT03308.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium MLMS-1] Length = 809 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 125/289 (43%), Gaps = 68/289 (23%) Query: 46 AAKARAEALDH--VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------- 93 A KA+ + L + VGPPG+GKT++ + VAR + NF R + G V +A Sbjct: 339 AVKAQVDKLKGPILCLVGPPGVGKTSICKSVARAMDRNFVRLSLGGVRDEAEIRGHRRTY 398 Query: 94 -GDL-AALLTNLED----RDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLD 135 G + +L +++ VL +DE+ ++S+ + E+L P + D LD Sbjct: 399 IGAMPGKILRSMQQAKVVNPVLCLDEVDKMSMDFRGDPSAALLEVLDPEQNHSFSDHYLD 458 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193 L + +LS I + + PLQDR I I++N Y ED I Q Sbjct: 459 L-----------EYDLSGVFFITTANSLAGIPAPLQDRMEI-IQINGYTEEDKVNIAQGF 506 Query: 194 ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 R + G A D + A+R L+RR + A + + R IA + Sbjct: 507 LAPRQLEANGFAAGDILFTDPALRE---------LIRR---YTREAGVRNLERAIA-SIC 553 Query: 251 LRLAIDKMGFDQLDLRY-LT--MIARNFGGGPVGIETISAGLSEPRDAI 296 +LA ++ Q D RY LT +AR+ G+ GL+E +D + Sbjct: 554 RKLARHRLKRQQRDKRYRLTPAAVARHL-----GVAKYRYGLAEEQDRV 597 >gi|328957181|ref|YP_004374567.1| recombination factor protein RarA [Carnobacterium sp. 17-4] gi|328673505|gb|AEB29551.1| recombination factor protein RarA [Carnobacterium sp. 17-4] Length = 428 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 108/266 (40%), Gaps = 53/266 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++ GQ K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 9 MRPTHIDNIVGQQHLVGKGKIIRRMVEAKM--LSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + K DL ++ + +L +DEIHRL ++ L P +E+ Sbjct: 67 FRILNAASDTKK-DLQIVVEEAKMSGTVILLLDEIHRLDKPKQDFLLPHLEN-------- 117 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLT-NP-LQDRFGIPIRLNFYEIEDLKTIV----- 192 R LI ATT +T NP ++ R I L ED++ + Sbjct: 118 ------------GRIILIGATTENPYITINPAIRSRSQI-FELKTLSNEDIQQAMWNAVN 164 Query: 193 --QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT---------I 241 ++G +A+TD+A + + G LR + E+A T I Sbjct: 165 DSEKGFGKEKIAITDQALLHFSRATSGD-------LRSSLNGLELAIKSTAPDEQGMINI 217 Query: 242 TREIADAALLRLAI--DKMGFDQLDL 265 T EIA+ + R A+ DK G D+ Sbjct: 218 TLEIAEECVQRKALTHDKDGDAHYDV 243 >gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE] gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE] Length = 332 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 5/67 (7%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 ++ +D RP+TL+E GQ + LK +++ L H+LF GPPG+GKT A Sbjct: 11 MASDDVWTEKYRPKTLDEVIGQEQIVRRLKSYVKTGN-----LPHLLFSGPPGVGKTACA 65 Query: 72 QVVAREL 78 +A+++ Sbjct: 66 VALAKDM 72 >gi|150010979|gb|ABR57146.1| ATPase AAA family protein [Staphylococcus xylosus] Length = 425 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 12/136 (8%) Query: 20 SLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 S +RP ++E Q V ++ +E + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPSNIDEIISQEHLVGPKGIIRRMVETKR-----LSSMIFYGPPGIGKTSIAKAISG 62 Query: 77 ELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 FR + V D+ ++ + + +L +DEIHRL ++ L P +E+ ++ Sbjct: 63 STQFKFRQLNA-VTNTKKDMQLIVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI 121 Query: 135 DLMVGEGPSARSVKIN 150 +++G S IN Sbjct: 122 -VLIGATTSNPYHAIN 136 >gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z] gi|158512813|sp|A2SQT3|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z] Length = 321 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 85/217 (39%), Gaps = 37/217 (17%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP+ L E GQ + L+ ++ +AL H+LF G G+GKTT A +ARE+ Sbjct: 9 IEKYRPKNLAEVVGQQDVVERLRSYVAT-----KALPHLLFTGSAGVGKTTCAVALAREM 63 Query: 79 -----GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125 +NFR + V+ A L D +LF+DE L+ + L Sbjct: 64 FGDTWNMNFRELNASDERGIDVVRNQIKQFARTAPLGDATFKILFLDEADALTQDAQAAL 123 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 ME++ RF L + + +P+Q R I R Sbjct: 124 RRTMENYA----------------ETCRFIL--SCNYSSKIIDPIQSRCAI-YRFRPLTD 164 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 E + + R AK G+ + + A I S G R A Sbjct: 165 EAISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKA 201 >gi|332364543|gb|EGJ42314.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK355] Length = 422 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ + K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTDIDQIIGQQHLVGSGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|221135429|ref|ZP_03561732.1| recombination factor protein RarA [Glaciecola sp. HTCC2999] Length = 440 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 5/101 (4%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEI 114 +L GPPG GKTTLAQ++A+ + N S V + D+ A +T+ ++F+DE+ Sbjct: 46 MLLWGPPGTGKTTLAQIIAKHIDANLIVLSA-VTSGVKDIRDAMAMTHPGVVTIVFVDEV 104 Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR 153 HR + ++ P +E + + E PS LSR Sbjct: 105 HRFNKSQQDAFLPFIESGAITFIGATTENPSFSCNNALLSR 145 >gi|300690797|ref|YP_003751792.1| Replication-associated recombination protein A [Ralstonia solanacearum PSI07] gi|299077857|emb|CBJ50495.2| Replication-associated recombination protein A [Ralstonia solanacearum PSI07] Length = 436 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +++E GQ K + A A E +L+ GPPG+GKTTLA+++A Sbjct: 7 LRPHSVDEVIGQQHLLGPGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V++ D+ + E R ++F+DE+HR + ++ P +E Sbjct: 65 FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 118 >gi|325474698|gb|EGC77884.1| DNA polymerase III [Treponema denticola F0402] Length = 468 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 99/230 (43%), Gaps = 29/230 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ E+ GQ + L+ IEA K A A LF GP G GKT+ A+++A+ L Sbjct: 11 RPQRFEDLLGQEFVAATLQKSIEAGKI-AHAY---LFSGPRGCGKTSSARILAKVLNC-- 64 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQLD 135 GP G + +T DV+ ID S+ I +EIL+P + Sbjct: 65 --AEGPRPTPCGHCTSCEEITAGSCLDVIEIDGASNTSVNDVRQIKDEILFPPNSNRYKI 122 Query: 136 LMVGE----GPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--YE 184 ++ E SA ++++ I ATT + + ++ R + NF Sbjct: 123 YIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSRCQ---QFNFKLVS 179 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 IE LK + A G++ DEA IA + G+ R A L +V F++ Sbjct: 180 IEILKQALADAAAELGISADDEALYWIAREATGSVRDAYTLFDQVAAFSD 229 >gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica] Length = 329 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP L++ E S +K FIE E L H+LF GPPG GKT+ VA+EL Sbjct: 15 RPNKLDDLISHTEIISTIKKFIEN-----EQLPHLLFYGPPGTGKTSTILAVAKEL 65 >gi|308190041|ref|YP_003922972.1| Holliday junction DNA helicase RuvB [Mycoplasma fermentans JER] gi|307624783|gb|ADN69088.1| Holliday junction DNA helicase RuvB [Mycoplasma fermentans JER] Length = 154 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 L P +EF GQ + +L + ++ +K + +++FV P G GK +LA ++++ + Sbjct: 4 LTPINFKEFRGQKDLIKSLIILLQESKK----IPNMIFVAPKGYGKYSLANIISQFKDRS 59 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 + + I +L +L NL++ +LFI++I++L ++++L+ LD + Sbjct: 60 LQPITSNNIVDEFELLNILANLKNNAILFIEDINKLKPELKKLLFDIYNSINLDKVEKIC 119 Query: 142 PSARSVKI-NLSRFTLIAATTRV 163 S + +KI N S I ++ ++ Sbjct: 120 YSNKRLKIKNFSIIGTINSSNQI 142 >gi|270307654|ref|YP_003329712.1| Holliday junction DNA helicase [Dehalococcoides sp. VS] gi|270153546|gb|ACZ61384.1| Holliday junction DNA helicase [Dehalococcoides sp. VS] Length = 312 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF 110 AE H++ GPP L KT + + G G +KAG L L+ E + +L Sbjct: 118 AEKPVHIMLTGPPALAKTLFLWDIEQTFGEQAIWLVGSATSKAG-LWDLVAEREPK-ILL 175 Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170 IDE+ +++ + L ME +L R + IN + ++AA+ R+ L+ L Sbjct: 176 IDEMDKMNAVDMAALLTLMEGGRL----VRAKRGRELDIN-NPLKVVAASNRLEKLSPEL 230 Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 + RF I +LN Y + T+V +G + +++E A +IA R G Sbjct: 231 RSRFAIR-KLNPYSRSEFLTVV-KGVLVRKENLSEEMAQDIASRLDG 275 >gi|160947516|ref|ZP_02094683.1| hypothetical protein PEPMIC_01450 [Parvimonas micra ATCC 33270] gi|158446650|gb|EDP23645.1| hypothetical protein PEPMIC_01450 [Parvimonas micra ATCC 33270] Length = 428 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 14/118 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ L F GQ N V K ++ GPPG GKT+LA +++ Sbjct: 22 MRPKDLSFFIGQDNIIKNNSVLKNMIKNNR--FSSMILYGPPGSGKTSLANIISSTTDNY 79 Query: 82 FRS----TSGP-----VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F TSG +I A D ++ R +LFIDEIHR + + ++ L +E Sbjct: 80 FVKISAVTSGTKEIKEIIELAKDNLSMYN---KRTILFIDEIHRFNKMQQDYLLEFVE 134 >gi|54294651|ref|YP_127066.1| recombination factor protein RarA [Legionella pneumophila str. Lens] gi|53754483|emb|CAH15967.1| hypothetical protein lpl1728 [Legionella pneumophila str. Lens] Length = 434 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 15/118 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ + E GQ L++ +K L ++ GPPG+GKTT+A++ A+ Sbjct: 16 LRPQHINEVIGQSHLLGEGKPLRLCFMGSK-----LHSMILWGPPGVGKTTIARLTAQAF 70 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 + + S V + D+ A + ++ + +LFIDEIHR + ++ L P E Sbjct: 71 DCEWIALSA-VFSGVKDIRAAIEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTE 127 >gi|157867059|ref|XP_001682084.1| peroxisome assembly protein [Leishmania major strain Friedlin] gi|68125536|emb|CAJ03401.1| putative peroxisome assembly protein [Leishmania major strain Friedlin] Length = 959 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 24/32 (75%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+G+NF S GP Sbjct: 684 VLFYGPPGCGKTLLAKAVATEMGMNFISVKGP 715 >gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138] gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata] Length = 331 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+TL++ GQ E +K F++ K L H+LF GPPG GKT+ +A+++ G N Sbjct: 16 RPQTLDDVYGQREVVGTVKKFVQEGK-----LPHLLFYGPPGTGKTSTIVALAKDIYGKN 70 Query: 82 FRS 84 + + Sbjct: 71 YSN 73 >gi|11493971|gb|AAG35725.1|AF208046_1 RuvB-like RUVBL1 [Mus musculus] Length = 445 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 13/119 (10%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGPVIAKAGDLAALLTNLED-- 105 A + ++ GPPG GKTTLA ++A ++ + F + S AK D+ ++ ++ Sbjct: 38 ANEIPSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEK 96 Query: 106 -----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 + +LFIDEIHR + ++ P +E + L+ E PS + LSR +I Sbjct: 97 SFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVI 155 >gi|332358379|gb|EGJ36204.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK49] Length = 422 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ + K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTDIDQIIGQQHLVGSGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|322386659|ref|ZP_08060284.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus ATCC 51100] gi|321269332|gb|EFX52267.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus ATCC 51100] Length = 422 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTSIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|113475969|ref|YP_722030.1| vesicle-fusing ATPase [Trichodesmium erythraeum IMS101] gi|110167017|gb|ABG51557.1| Vesicle-fusing ATPase [Trichodesmium erythraeum IMS101] Length = 639 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 17/113 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQV 73 LRP TL + G E L+ IE R + L VL VGPPG GKT A+ Sbjct: 100 LRP-TLRDIGGMSEVIQELREVIELPLKRPDLLTKLGLEPSRGVLLVGPPGTGKTLTAKA 158 Query: 74 VARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--VLFIDEIHRLS 118 +A ELG+N+ + +GP V++K G L + + ++FIDEI ++ Sbjct: 159 IAEELGLNYIAINGPEVMSKYYGEAEGKLRDIFAKAKKSAPCLIFIDEIDSIA 211 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 K +A+A +L G PG GKT LA+ VA + NF + +GP Sbjct: 402 KTKAKAPKGILLWGEPGTGKTLLAKAVASQAQANFIAVNGP 442 >gi|207109046|ref|ZP_03243208.1| recombination factor protein RarA [Helicobacter pylori HPKX_438_CA4C1] Length = 83 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 SLL P++LE+F GQ +A +++ H F GPPG+GKT+LAQ++A Sbjct: 5 SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIA 58 >gi|50292021|ref|XP_448443.1| hypothetical protein [Candida glabrata CBS 138] gi|49527755|emb|CAG61404.1| unnamed protein product [Candida glabrata] Length = 559 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 22/139 (15%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LRP+ + ++ GQ S L +++ + ++ GPPG+GKTTLA+++ + Sbjct: 122 LRPKEIRDYVGQQHILSQESGVLNKYVQEG-----LVPSMILWGPPGVGKTTLARLLTKT 176 Query: 78 LGVN-FRST---SGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILY 126 ++ R T + A A +L ++ + R VLFIDEIHR + +++L Sbjct: 177 ASLHGSRYTMVETSATKANAQELRSIFEKGRKEYQLTKRRVVLFIDEIHRFNKAQQDLLL 236 Query: 127 PAMEDFQLDLM--VGEGPS 143 P +E+ + L+ E PS Sbjct: 237 PHVENGDIVLIGATTENPS 255 >gi|7524828|ref|NP_045830.1| hypothetical protein ChvulCp071 [Chlorella vulgaris] gi|3023786|sp|P56369|FTSHL_CHLVU RecName: Full=ATP-dependent zinc metalloprotease FtsH homolog gi|2224421|dbj|BAA57905.1| unnamed protein product [Chlorella vulgaris] Length = 1720 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 55/118 (46%), Gaps = 15/118 (12%) Query: 51 AEALDH-VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---EDR 106 +E L H +L GPPG GKT L Q +A E V SG + + G+ AA L E R Sbjct: 1003 SETLPHGILLTGPPGTGKTLLVQALAGEAQVPVIVLSGSSLMEPGESAAFKLQLVFQEAR 1062 Query: 107 D----VLFIDEIHRLSIIVEEILY------PAMEDFQLDLMVGEGPSARSVKINLSRF 154 ++FIDEI LS ++L P E F ++ PS +SVK S F Sbjct: 1063 QLAPCIVFIDEIDTLSSKRSQLLQNPMANDPGFESFLESFLLQSKPS-QSVKKTESFF 1119 >gi|323490016|ref|ZP_08095237.1| hypothetical protein GPDM_11715 [Planococcus donghaensis MPA1U2] gi|323396312|gb|EGA89137.1| hypothetical protein GPDM_11715 [Planococcus donghaensis MPA1U2] Length = 429 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 7/112 (6%) Query: 22 LRPRTLEEFTGQVEAC-SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RPRT++E GQ + S+ ++ + ++ L G PG+GKT++A +A + Sbjct: 10 MRPRTIDEVVGQKDVIGSHTALYKMISNGHVPSM---LLYGEPGIGKTSIAHAIAGTSNL 66 Query: 81 NFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + + K D+ ++T + + +LF+DEIHR + + ++ L P +E Sbjct: 67 PFIALNATTSGKK-DVEEVVTEARMTGKVLLFLDEIHRFNKLQQDALLPHVE 117 >gi|290980685|ref|XP_002673062.1| predicted protein [Naegleria gruberi] gi|284086643|gb|EFC40318.1| predicted protein [Naegleria gruberi] Length = 822 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 8/80 (10%) Query: 47 AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLE 104 AK EA VLF GPPG GKT LA+ +A E NF S GP + G+ A + N+ Sbjct: 516 AKFGQEASKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRNIF 575 Query: 105 DRD------VLFIDEIHRLS 118 ++ VLF DE+ ++ Sbjct: 576 NKARAAAPCVLFFDELDSIA 595 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ A L E+ + + Sbjct: 253 ILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESEANLRKAFEEAEKNAPAI 312 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 313 IFIDEIDSIA 322 >gi|224419089|ref|ZP_03657095.1| endopeptidase Clp ATP-binding chain A [Helicobacter canadensis MIT 98-5491] gi|253828027|ref|ZP_04870912.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Helicobacter canadensis MIT 98-5491] gi|313142599|ref|ZP_07804792.1| endopeptidase clp ATP-binding chain a [Helicobacter canadensis MIT 98-5491] gi|253511433|gb|EES90092.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Helicobacter canadensis MIT 98-5491] gi|313131630|gb|EFR49247.1| endopeptidase clp ATP-binding chain a [Helicobacter canadensis MIT 98-5491] Length = 746 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 33/150 (22%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFR-----------STSGPVIAKAG----DLAALLTN 102 LF GP G+GKT LA+ +A+ LG+NF S+SG + A AG D +LT Sbjct: 479 LFSGPSGVGKTELAKEIAKALGINFERIDMSEYMEKYSSSGLIGAPAGYVGYDKGGILTE 538 Query: 103 LEDRD---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 + ++ +L +DEI + V I M++ +L GE SV ++ Sbjct: 539 MIKKNPHTLLLLDEIEKAHPDVLNIFLQVMDNAKLTDNNGESADFSSV--------ILIM 590 Query: 160 TTRVGLLTNP----LQD---RFGIPIRLNF 182 T+ VG P QD +F I+ NF Sbjct: 591 TSNVGSKEAPTLGFTQDSVAKFNSAIKDNF 620 >gi|147668860|ref|YP_001213678.1| ATPase [Dehalococcoides sp. BAV1] gi|146269808|gb|ABQ16800.1| ATPase associated with various cellular activities, AAA_5 [Dehalococcoides sp. BAV1] Length = 307 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 9/187 (4%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115 HV+ GPP L KT + + G G +KAG L L+ E + +L IDE+ Sbjct: 120 HVMLTGPPALAKTLFLWDIEQTFGEQAIWLVGSATSKAG-LWDLVAEREPK-ILLIDEMD 177 Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175 +++ + L ME +L + V G R + IN + +IAA+ R+ L+ L+ RF Sbjct: 178 KMNAVDMAALLTMMEGGRL-VRVKRG---RELDIN-NPLKVIAASNRLEKLSPELRSRFA 232 Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235 I +LN Y + T+V +G + + ++ A EIA + G + +R R +V Sbjct: 233 IR-KLNPYSRSEFLTVV-KGVLVRKEGLPNDLAEEIARKLDGQSQDVRDAIRIARLAPQV 290 Query: 236 AHAKTIT 242 K I+ Sbjct: 291 GVDKAIS 297 >gi|254519289|ref|ZP_05131345.1| recombination factor protein RarA [Clostridium sp. 7_2_43FAA] gi|226913038|gb|EEH98239.1| recombination factor protein RarA [Clostridium sp. 7_2_43FAA] Length = 416 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 10/143 (6%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 ++RP+TLE+F GQ + + K + + + + GPPG GKTTLA ++A + Sbjct: 10 IMRPKTLEDFVGQKDILAKGKPLYNLITNKM--IPNCILYGPPGTGKTTLANIMANYVDR 67 Query: 81 NFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + A D+ + +L+ + V++IDE+ S ++ L +E+ ++ Sbjct: 68 KFYKLNA-TTASVKDIQEITESLDSLLNYNGVVIYIDELQHFSKKQQQALLEFIENGRVT 126 Query: 136 LMVG--EGPSARSVKINLSRFTL 156 L+ E P K LSR + Sbjct: 127 LIASTTENPYFAIHKAILSRCNI 149 >gi|89901945|ref|YP_524416.1| recombination factor protein RarA [Rhodoferax ferrireducens T118] gi|89346682|gb|ABD70885.1| Recombination protein MgsA [Rhodoferax ferrireducens T118] Length = 435 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 39/247 (15%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL E GQ + L++ E+ + + + GPPG GKTT+A+++A Sbjct: 19 LRPRTLLEVIGQQQLLGEGMALRIAFESGQPHS-----CILWGPPGTGKTTIARLMADAF 73 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + S + I +A + A + R ++F+DE+HR + ++ +E Sbjct: 74 DAQFITISAVLGGVKDIREAVEQAQVAQGQGRRTIVFVDEVHRFNKSQQDAFLAHVES-- 131 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTI 191 FT I ATT + + L R + + L +DL+ I Sbjct: 132 ------------------GLFTFIGATTENPSFEVNSALLSRAAVYV-LQPLAPQDLEQI 172 Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 + R L L ++ A E R G R L + VA + EI D L Sbjct: 173 IARALALQALPAIEKIASE---RLVGFADGDARRLLNTLEMLSVAATQERVSEITDPWLQ 229 Query: 252 RLAIDKM 258 ++ ++M Sbjct: 230 KVLGERM 236 >gi|320594099|gb|EFX06502.1| aaa family ATPase [Grosmannia clavigera kw1407] Length = 645 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 21/194 (10%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP+ L++ GQ N L+ IEA + + ++ G G GKTT+A+ +A+++G Sbjct: 206 MRPQDLDDVFGQELVGPNGVLRALIEADR-----VPSMILWGGSGTGKTTIARCIAQQVG 260 Query: 80 VNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F +T+ I++ L +N + +LF DEIHR + +++ +E Sbjct: 261 SRFVEMNATNSGGISECKKLFQDASNELALTGRKTILFCDEIHRFTKAQQDVFLKPVEAG 320 Query: 133 QLDLM--VGEGPSARSVKINLSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185 + L+ E PS R V LSR FTL T +L + GIP N Sbjct: 321 TITLIGATTENPSFRIVTALLSRCRTFTLAPLATEDVRCILERAVLQETGIPASDNNQGS 380 Query: 186 EDLKTIVQRGAKLT 199 + I + KLT Sbjct: 381 PNETDISEETKKLT 394 >gi|213621125|ref|ZP_03373908.1| recombination factor protein RarA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 123 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 13/102 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP L ++ GQ + A L IEA L ++ GPPG GKTTLA+V+AR Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74 Query: 79 GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIH 115 + TSG I +A + A N R +LF+DE+H Sbjct: 75 SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVH 116 >gi|150399923|ref|YP_001323690.1| AAA family ATPase [Methanococcus vannielii SB] gi|150012626|gb|ABR55078.1| AAA family ATPase, CDC48 subfamily [Methanococcus vannielii SB] Length = 781 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 16/105 (15%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ +E E D VL GPPG GKT LA+ VA E Sbjct: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234 Query: 78 LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEI 114 G NF + +GP I +L + E+ ++FIDEI Sbjct: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEI 279 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E NF S GP I Sbjct: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEI 577 >gi|46117090|ref|XP_384563.1| hypothetical protein FG04387.1 [Gibberella zeae PH-1] Length = 1226 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 18/153 (11%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPRTL+E GQ V L+ IE+++ + ++ G G GKTT+A+ +A +G Sbjct: 818 MRPRTLDEVCGQDLVGPTGVLRSLIESSQ-----VPSMILWGASGTGKTTIARCIAHMVG 872 Query: 80 VNF---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +TS V +L + ++F DEIHR + +++ +E Sbjct: 873 SRFIELNATSTGVSECKKYFQEATNDLALTGRKTIIFCDEIHRFNKAQQDVFLKPVEAGT 932 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATT 161 + L+ E PS + LSR FTL + TT Sbjct: 933 VTLIGATTENPSFKVASALLSRCRTFTLRSLTT 965 >gi|302759525|ref|XP_002963185.1| hypothetical protein SELMODRAFT_79406 [Selaginella moellendorffii] gi|300168453|gb|EFJ35056.1| hypothetical protein SELMODRAFT_79406 [Selaginella moellendorffii] Length = 366 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 87/207 (42%), Gaps = 43/207 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLT-------NLEDRD 107 VLF GPPG GKT+ A+V+A + GV V+ G+ LL+ + D Sbjct: 125 VLFEGPPGCGKTSCARVIASQAGVPLLYVPLEVVTSKYYGESERLLSSVFNAGNDFPDGA 184 Query: 108 VLFIDEIHRLSIIVEEILYPA-----------MEDFQLDLMVGEGPSARSVKINLSRFTL 156 ++F+DEI L+ + ++ A M+ F+ D R + Sbjct: 185 IVFLDEIDSLATSRDSDMHEATRRMLSVLLRQMDGFEQD----------------KRIVV 228 Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216 IAAT R L L RF I + +++ + IV + A+ ++ + +A S Sbjct: 229 IAATNRKQDLDPALLSRFDASITFDLPDLQTREEIVAQYAR----HLSRKELSSVAATSE 284 Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITR 243 G ++GR LR V AE A I R Sbjct: 285 G---MSGRDLRDVCQQAERKWASKILR 308 >gi|160902770|ref|YP_001568351.1| recombination factor protein RarA [Petrotoga mobilis SJ95] gi|160360414|gb|ABX32028.1| AAA ATPase central domain protein [Petrotoga mobilis SJ95] Length = 411 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 39/246 (15%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 ++RP+ ++E G + LK +I+ K R+ + G PG GK+T+ + + E+ Sbjct: 10 IIRPKKVDEVLGNEKLKEILKTWIKNKKVRS-----FIIYGEPGSGKSTIVRALINEIKD 64 Query: 81 NFR--STSGPVIAKAG--DLAALLTNLEDR-DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 + S SG + K D+ NL + +LF+DEIHRL+ ++ L ++E +L Sbjct: 65 YYDVFSISGAIEGKKKIKDIIEQKNNLFTKPKLLFVDEIHRLNKAEQDTLLLSVETGELT 124 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 L +G ++ +N + + + L+T+ + F +IED Sbjct: 125 L-IGATTENPAISVNPALLSRVLVFKTKELITDDYEKLFQ--------QIEDY------- 168 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT----REIADAALL 251 L +T EA + AG +RR+ + E A+ I + D Sbjct: 169 --YKDLKITKEA-------RKALIEYAGNDIRRIMNLIETANEAGINSIDLEFLKDFTGY 219 Query: 252 RLAIDK 257 RL DK Sbjct: 220 RLTYDK 225 >gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM 11551] gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM 11551] Length = 328 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 6/66 (9%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP+TL++ GQ + L+ +IE + L H+LF GP G+GKTT A +AR + Sbjct: 18 IEKYRPQTLDDVYGQEDIVERLRSYIEQ-----DDLPHLLFAGPAGVGKTTSATAIARAI 72 Query: 79 -GVNFR 83 G ++R Sbjct: 73 YGDDWR 78 >gi|195588464|ref|XP_002083978.1| GD14011 [Drosophila simulans] gi|194195987|gb|EDX09563.1| GD14011 [Drosophila simulans] Length = 611 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 28/42 (66%) Query: 47 AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++A + A+ VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 356 SRAASVAVKRVLLCGPPGCGKTLLAKAIANEAGINFISVKGP 397 >gi|300707453|ref|XP_002995933.1| hypothetical protein NCER_101048 [Nosema ceranae BRL01] gi|239605177|gb|EEQ82262.1| hypothetical protein NCER_101048 [Nosema ceranae BRL01] Length = 788 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ A + L DR V Sbjct: 525 VLFYGPPGCGKTLLAKAVATECKANFISVKGPELLTMWYGESEANVRELFDRARAAAPCV 584 Query: 109 LFIDEIHRLS 118 LF DEI ++ Sbjct: 585 LFFDEIDSVA 594 Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 +L GPPG GKT +A+ +A E G +GP I AG+ L D + Sbjct: 252 ILLYGPPGSGKTLIAKAIANETGAFIYMINGPEIMSKMAGESENNLRKAFDEAEKNKPAI 311 Query: 109 LFIDEIHRLS 118 +FIDE+ L+ Sbjct: 312 IFIDEVDSLA 321 >gi|327459193|gb|EGF05541.1| AAA family ATPase [Streptococcus sanguinis SK1057] Length = 422 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 LRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|312882487|ref|ZP_07742228.1| recombination factor protein RarA [Vibrio caribbenthicus ATCC BAA-2122] gi|309369887|gb|EFP97398.1| recombination factor protein RarA [Vibrio caribbenthicus ATCC BAA-2122] Length = 448 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 9/116 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE + GQ K A +A L ++ GPPG GKTTLA++ A+ Sbjct: 21 MRPNKLEGYIGQSHILGKGKPLRRAIEA--GHLHSMILWGPPGTGKTTLAELAAQYADAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED 131 S V + ++ + + R VLF+DE+HR + ++ P +ED Sbjct: 79 VERVSA-VTSGVKEIRLAIDKARENKLAGRRTVLFVDEVHRFNKSQQDAFLPHIED 133 >gi|159905162|ref|YP_001548824.1| AAA family ATPase [Methanococcus maripaludis C6] gi|159886655|gb|ABX01592.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C6] Length = 781 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 16/105 (15%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ +E E D VL GPPG GKT LA+ VA E Sbjct: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234 Query: 78 LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEI 114 G NF + +GP I +L + E+ ++FIDEI Sbjct: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEI 279 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E NF S GP I Sbjct: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEI 577 >gi|269925952|ref|YP_003322575.1| ATP-dependent protease La [Thermobaculum terrenum ATCC BAA-798] gi|269789612|gb|ACZ41753.1| ATP-dependent protease La [Thermobaculum terrenum ATCC BAA-798] Length = 846 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 54/225 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L Q +A+ LG F R + G + +A G + + Sbjct: 415 LCFVGPPGVGKTSLGQSIAKALGRKFVRMSLGGIRDEAEIRGHRRTYIGAMPGRIIQSIM 474 Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 E D +F +DE+ ++S+ + E+L PA D + + +LS Sbjct: 475 RAESSDPVFMLDEVDKISVGFQGDPAAALLEVLDPAQNHTFRDNYL-------DIPFDLS 527 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT------IVQRGAKLTGLA---- 202 + IA + + PL+DR I I L+ Y ED K ++ R K GL Sbjct: 528 KVMFIATANTLDTIPAPLRDRMEI-IELSGY-TEDEKIHIARQYLIPRQLKANGLKPEEV 585 Query: 203 -VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 TDEA I RG R AG VR+ H ++ R++A Sbjct: 586 DFTDEAIKSII---RGYTREAG-----VRNLER--HIASVLRKLA 620 >gi|154301803|ref|XP_001551313.1| hypothetical protein BC1G_10053 [Botryotinia fuckeliana B05.10] gi|150855715|gb|EDN30907.1| hypothetical protein BC1G_10053 [Botryotinia fuckeliana B05.10] Length = 558 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 26/152 (17%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPR+L+E GQ V L+ IE + + ++ G G GKTT+A+ VA +G Sbjct: 153 MRPRSLDEVCGQELVGPQGVLRSLIEQDR-----VPSMILWGGAGTGKTTIARCVATMVG 207 Query: 80 VNF---RSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129 F STS V G++ + T + ++F DEIHR S +++ + Sbjct: 208 SRFVEINSTSSGV----GEVKKIFTEARGELGLTGRKTIIFCDEIHRFSKSQQDVFLGPV 263 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTL 156 E Q+ L+ E PS + LSR FTL Sbjct: 264 ESGQITLIGATTENPSFKVQNALLSRCRTFTL 295 >gi|271500827|ref|YP_003333852.1| AAA ATPase central domain-containing protein [Dickeya dadantii Ech586] gi|270344382|gb|ACZ77147.1| AAA ATPase central domain protein [Dickeya dadantii Ech586] Length = 447 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 9/129 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL ++ GQ K A +A L ++ GPPG GKTTLA+++ + Sbjct: 20 MRPVTLAQYIGQQHLLGPGKPLPRAIEA--GQLHSMILWGPPGTGKTTLAELIGHYGQAD 77 Query: 82 FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 TSG I +A + A + R +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 Query: 137 M--VGEGPS 143 + E PS Sbjct: 138 IGATTENPS 146 >gi|15678268|ref|NP_275383.1| replication factor C large subunit [Methanothermobacter thermautotrophicus str. Delta H] gi|42559321|sp|O26342|RFCL_METTH RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit; AltName: Full=mthRFC large subunit gi|2621289|gb|AAB84746.1| replication factor C, large subunit [Methanothermobacter thermautotrophicus str. Delta H] Length = 479 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 8/100 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR----- 76 RP + +E G + + +K +I+A KA + +L VGPPG GKTTLA ++ + Sbjct: 7 YRPGSFDEVVGNQKVIAEIKEWIKAWKA-GKPQKPLLLVGPPGTGKTTLAHIIGKEFSDT 65 Query: 77 -ELGVNFRSTSGPVIAKAGDLAALLTNL-EDRDVLFIDEI 114 EL + R + ++ AG+ +A + D ++ +DE+ Sbjct: 66 LELNASDRRSQDALMRSAGEASATRSLFNHDLKLIILDEV 105 >gi|134046525|ref|YP_001098010.1| AAA family ATPase [Methanococcus maripaludis C5] gi|132664150|gb|ABO35796.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C5] Length = 784 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 16/105 (15%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ +E E D VL GPPG GKT LA+ VA E Sbjct: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234 Query: 78 LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEI 114 G NF + +GP I +L + E+ ++FIDEI Sbjct: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEI 279 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E NF S GP I Sbjct: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEI 577 >gi|18313052|ref|NP_559719.1| moxR related protein [Pyrobaculum aerophilum str. IM2] gi|18160556|gb|AAL63901.1| moxR related protein [Pyrobaculum aerophilum str. IM2] Length = 301 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 4/45 (8%) Query: 39 NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83 L++ + A AR HVLF PPGLGKTTLA+++A+ LG+NFR Sbjct: 18 TLELLLSAIIARG----HVLFNDPPGLGKTTLAKILAKALGLNFR 58 >gi|196248596|ref|ZP_03147297.1| stage V sporulation protein K [Geobacillus sp. G11MC16] gi|196212321|gb|EDY07079.1| stage V sporulation protein K [Geobacillus sp. G11MC16] Length = 310 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 95/221 (42%), Gaps = 40/221 (18%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTSGPVIAKAGDLAALL---TNL 103 KA +AL H++F G PG GKTT+A+++ + +N S + A+ DL T Sbjct: 81 KANRQAL-HMIFKGNPGTGKTTVARLLGKLFFEMNVLSKGHFIEAERADLVGEYIGHTAN 139 Query: 104 EDRD--------VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSV 147 + RD VLFIDE + L+ E + L MED+ DL+V R + Sbjct: 140 KTRDLIKKARGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDYCDDLVVILAGYPREM 199 Query: 148 KINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 LS NP L RF + I Y +E+L I ++ + +T E Sbjct: 200 DYFLS--------------LNPGLPSRFPLTIEFPDYTVEELVQIAKQMLREREYEMTPE 245 Query: 207 AACEIAMRSRGTPRIAGRLL----RRVRDFAEVAHAKTITR 243 A ++ + GT AGR+ R VR+ E A K R Sbjct: 246 AERKLYVHLEGTLEAAGRMKFSNGRYVRNLIEKAIRKQAVR 286 >gi|167042397|gb|ABZ07124.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine crenarchaeote HF4000_ANIW97P9] Length = 386 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ + G E+ K+F+E + +L VGPPG+GKTTLA + A++ G + Sbjct: 8 RPKNFLDLIGNEES---RKLFVEWFTNWKKGTRPILLVGPPGIGKTTLANLAAKQFGYDL 64 Query: 83 RSTSGPVIAKAGDLAALLTN-LEDRDVL-----FIDEI 114 S + + ++ +L+ L ++ VL FIDE+ Sbjct: 65 ISLNASDVRNKKNIHEILSPVLGNQTVLGTPMIFIDEV 102 >gi|284161621|ref|YP_003400244.1| Replication factor C [Archaeoglobus profundus DSM 5631] gi|284011618|gb|ADB57571.1| Replication factor C [Archaeoglobus profundus DSM 5631] Length = 755 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+TL+E Q E LK ++ + + + H+LF GPPG GKT A + R+L G N Sbjct: 11 RPKTLDEVVDQEEVVKRLKNYV-----KQKNIPHLLFAGPPGTGKTATAIALTRDLFGEN 65 Query: 82 FRST 85 +R Sbjct: 66 WRDN 69 >gi|291615033|ref|YP_003525190.1| ATPase AAA [Sideroxydans lithotrophicus ES-1] gi|291585145|gb|ADE12803.1| AAA ATPase central domain protein [Sideroxydans lithotrophicus ES-1] Length = 437 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ ++E GQ L++ ++ K L ++ GPPG+GKTTLA+++A Sbjct: 18 LRPKHIDEVIGQSHLLGEGKPLRLAFQSGK-----LHSMILWGPPGVGKTTLARLMASAF 72 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F S V++ D+ + E +LF+DE+HR + ++ P +E Sbjct: 73 DAEFVPLSA-VLSGVKDIREAIAQAEATLQQSGRHTILFVDEVHRFNKSQQDAFLPFVE 130 >gi|45357739|ref|NP_987296.1| cell division protein CDC48 [Methanococcus maripaludis S2] gi|45047299|emb|CAF29732.1| CDC48 cell division cycle protein family member [Methanococcus maripaludis S2] Length = 788 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 16/105 (15%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ +E E D VL GPPG GKT LA+ VA E Sbjct: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234 Query: 78 LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEI 114 G NF + +GP I +L + E+ ++FIDEI Sbjct: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEI 279 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E NF S GP I Sbjct: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEI 577 >gi|207723627|ref|YP_002254025.1| atpase related to the helicase subunit of the holliday junction resolvase protein [Ralstonia solanacearum MolK2] gi|206588830|emb|CAQ35792.1| atpase related to the helicase subunit of the holliday junction resolvase protein [Ralstonia solanacearum MolK2] Length = 436 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +++E GQ K + A A E +L+ GPPG+GKTTLA+++A Sbjct: 7 LRPHSVDEVIGQRHLLGPGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V++ D+ + E R ++F+DE+HR + ++ P +E Sbjct: 65 FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 118 >gi|138894833|ref|YP_001125286.1| stage V sporulation protein K [Geobacillus thermodenitrificans NG80-2] gi|134266346|gb|ABO66541.1| Stage V sporulation protein K [Geobacillus thermodenitrificans NG80-2] Length = 305 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 95/221 (42%), Gaps = 40/221 (18%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTSGPVIAKAGDLAALL---TNL 103 KA +AL H++F G PG GKTT+A+++ + +N S + A+ DL T Sbjct: 76 KANRQAL-HMIFKGNPGTGKTTVARLLGKLFFEMNVLSKGHFIEAERADLVGEYIGHTAN 134 Query: 104 EDRD--------VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSV 147 + RD VLFIDE + L+ E + L MED+ DL+V R + Sbjct: 135 KTRDLIKKARGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDYCDDLVVILAGYPREM 194 Query: 148 KINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 LS NP L RF + I Y +E+L I ++ + +T E Sbjct: 195 DYFLS--------------LNPGLPSRFPLTIEFPDYTVEELVQIAKQMLREREYEMTPE 240 Query: 207 AACEIAMRSRGTPRIAGRLL----RRVRDFAEVAHAKTITR 243 A ++ + GT AGR+ R VR+ E A K R Sbjct: 241 AERKLYVHLEGTLEAAGRMKFSNGRYVRNLIEKAIRKQAVR 281 >gi|213621460|ref|ZP_03374243.1| Holliday junction DNA helicase B [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 34 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 23/31 (74%) Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332 PY+IQQGF+QRTPRGR+ AW H GI P Sbjct: 1 PYLIQQGFLQRTPRGRMATVRAWNHFGITPP 31 >gi|312075109|ref|XP_003140271.1| replication factor C [Loa loa] gi|307764567|gb|EFO23801.1| replication factor C [Loa loa] Length = 308 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 16/89 (17%) Query: 5 EGLLSRNVSQEDADISLL--------RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56 + L+++ Q++A +L+ RPR +EE Q E S LK +E A L + Sbjct: 2 DAFLNQSKKQDNASTTLMEIPWVEKYRPRKVEEVAFQNEVVSVLKKVLEGAD-----LPN 56 Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRST 85 +LF GPPG GKT+ A + R+L FR+T Sbjct: 57 LLFYGPPGTGKTSAAIALCRQL---FRNT 82 >gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine microorganism HF4000_APKG10F13] Length = 323 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E+ + RP TL E GQ + L ++ R +++ H+LF GPPG GKTT + + Sbjct: 2 EEIWVEKYRPATLAEVVGQSVVTTRLASYV-----REKSMPHLLFAGPPGTGKTTCSLAL 56 Query: 75 AREL 78 ARE+ Sbjct: 57 AREM 60 >gi|156538268|ref|XP_001602992.1| PREDICTED: similar to werner helicase interacting protein [Nasonia vitripennis] Length = 522 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 36/197 (18%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--- 78 +RP ++ + GQ + + ++ E + +++ GPPG GKT+LA V+A Sbjct: 115 MRPNSIMSYVGQKHVLGPETMLYQLL-SKTE-IPNIILWGPPGCGKTSLANVIANTCQHC 172 Query: 79 -GVNFR----STSGPVIAKAGDLAALLTN---LEDRDVLFIDEIHRLSIIVEEILYPAME 130 G +R S + I+ D + +N R V+F+DEIHR + ++ P +E Sbjct: 173 PGGKYRYVKLSAAMSGISDVKDAITIASNELKFGRRTVMFMDEIHRFNKTQQDTFLPHIE 232 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 + L+ E PS F+L AA L R + I L IE+L Sbjct: 233 SGTIILIGATTENPS----------FSLNAA----------LLSRCRV-IVLEKLTIENL 271 Query: 189 KTIVQRGAKLTGLAVTD 205 I+ R K G AV D Sbjct: 272 TEILIRAIKAAGGAVHD 288 >gi|50365221|ref|YP_053646.1| recombination factor protein RarA [Mesoplasma florum L1] gi|50363777|gb|AAT75762.1| putative helicase subunit of Holliday junction resolvase [Mesoplasma florum L1] Length = 410 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 11/115 (9%) Query: 21 LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LLRP+T E GQ +K I R+ ++F GP G+GKT+ A +A + Sbjct: 8 LLRPKTTSEIIGQENLLKEDGLIKKMISNNFCRS-----LIFYGPSGVGKTSFAIALAND 62 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAME 130 L + + + K +L ++ ++R +L IDEIHRL+ ++IL ME Sbjct: 63 LNIEYDLFNASY-DKKENLTKIIDKAINKERFILIIDEIHRLNRDKQDILLNFME 116 >gi|15669074|ref|NP_247879.1| replication factor C large subunit [Methanocaldococcus jannaschii DSM 2661] gi|42559434|sp|Q58294|RFCL_METJA RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|1591562|gb|AAB98888.1| activator 1 (replication factor C), 53 KD subunit [Methanocaldococcus jannaschii DSM 2661] Length = 516 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP++L++ G + LK +IE+ + E +L VGPPG GKTTLA +A + G Sbjct: 9 RPKSLKDVAGHEKVKEKLKTWIESY-LKGETPKPILLVGPPGCGKTTLAYALANDYG 64 >gi|294341019|emb|CAZ89414.1| putative Holliday junction ATP-dependent DNA helicase ruvB [Thiomonas sp. 3As] Length = 470 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 11/140 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L E GQ K A + R L +LF GPPG+GKTTLA+++A + Sbjct: 37 LRPHHLGEVVGQRHLLGPGKPLRVAFETRR--LHSMLFWGPPGVGKTTLARLMADAFDAD 94 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED--FQ 133 F S V+A D+ + + ++F+DE+HR + ++ P +E F Sbjct: 95 FLPLSA-VLAGVKDIRDAVAQAQAAQQRGRATIVFVDEVHRFNKSQQDAFLPHVESGLFT 153 Query: 134 LDLMVGEGPSARSVKINLSR 153 E PS LSR Sbjct: 154 FIGATTENPSFEVNSALLSR 173 >gi|296136850|ref|YP_003644092.1| AAA ATPase central domain protein [Thiomonas intermedia K12] gi|295796972|gb|ADG31762.1| AAA ATPase central domain protein [Thiomonas intermedia K12] Length = 470 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 11/140 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP L E GQ K A + R L +LF GPPG+GKTTLA+++A + Sbjct: 37 LRPHHLGEVVGQRHLLGPGKPLRVAFETRR--LHSMLFWGPPGVGKTTLARLMADAFDAD 94 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED--FQ 133 F S V+A D+ + + ++F+DE+HR + ++ P +E F Sbjct: 95 FLPLSA-VLAGVKDIRDAVAQAQAAQQRGRATIVFVDEVHRFNKSQQDAFLPHVESGLFT 153 Query: 134 LDLMVGEGPSARSVKINLSR 153 E PS LSR Sbjct: 154 FIGATTENPSFEVNSALLSR 173 >gi|258542798|ref|YP_003188231.1| recombination factor protein RarA [Acetobacter pasteurianus IFO 3283-01] gi|256633876|dbj|BAH99851.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-01] gi|256636935|dbj|BAI02904.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-03] gi|256639988|dbj|BAI05950.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-07] gi|256643044|dbj|BAI08999.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-22] gi|256646099|dbj|BAI12047.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-26] gi|256649152|dbj|BAI15093.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-32] gi|256652139|dbj|BAI18073.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655196|dbj|BAI21123.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-12] Length = 453 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 19/148 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ LE+ GQ E A R +L ++ G PG+GKTT+A+++A+ Sbjct: 43 LRPQRLEDVVGQAYLLGP-----EGALTRMLERGSLASLILWGGPGVGKTTIARLLAQAA 97 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S V + DL N + +LF+DEIHR + ++ P +ED Sbjct: 98 GLKFVQLSA-VFSGVADLKKAFENARRQAEIGGGTLLFVDEIHRFNRAQQDGFLPVVEDG 156 Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157 + ++VG S +N LSR ++ Sbjct: 157 TV-VLVGATTENPSFALNSALLSRCQVM 183 >gi|600046|emb|CAA55489.1| N1302 [Saccharomyces cerevisiae] gi|2253183|emb|CAA96120.1| unnamed protein product [Saccharomyces cerevisiae] Length = 472 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 23/148 (15%) Query: 22 LRPRTLEEFTGQVEACS--NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 LRP+ L ++ GQ S N +F + + ++ GPPG+GKT+LA+++ + Sbjct: 24 LRPKELRDYVGQQHILSQDNGTLF---KYIKQGTIPSMILWGPPGVGKTSLARLLTKTAT 80 Query: 80 VN----------FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122 + F + A +L + + R VLFIDEIHR + + + Sbjct: 81 TSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEIHRFNKVQQ 140 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKIN 150 ++L P +E+ + +++G S ++N Sbjct: 141 DLLLPHVENGDI-ILIGATTENPSFQLN 167 >gi|307166495|gb|EFN60580.1| Replication factor C subunit 1 [Camponotus floridanus] Length = 935 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 30/128 (23%) Query: 11 NVSQEDADI------SLLRPRTLEEFTGQV--EACS-NLKVFI---------------EA 46 N SQE I RP+T+++ GQ ++C+ NL V++ + Sbjct: 373 NYSQETTSIGSQPLVEKYRPKTMKQIIGQQGDKSCARNLHVWLRDWYKNRQNSKLKNGSS 432 Query: 47 AKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-----NFRSTSGPVIAKAGDLAALLT 101 + E+ L GPPG+GKTT QVV +ELG N T + K +++ LL+ Sbjct: 433 KQTHGESFKAALLSGPPGVGKTTTVQVVCKELGYDLVEFNASDTRNKTLLKE-EVSGLLS 491 Query: 102 NLEDRDVL 109 N +D + Sbjct: 492 NTTMKDYV 499 >gi|222445468|ref|ZP_03607983.1| hypothetical protein METSMIALI_01107 [Methanobrevibacter smithii DSM 2375] gi|222435033|gb|EEE42198.1| hypothetical protein METSMIALI_01107 [Methanobrevibacter smithii DSM 2375] Length = 492 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP+TL+E G + + ++ +++ A +L VGPPG+GKTTLAQ +ARE Sbjct: 8 RPKTLDEVVGNNKEKALIQKWVDNWNA-GNPQKPLLLVGPPGIGKTTLAQAIAREFS 63 >gi|224542103|ref|ZP_03682642.1| hypothetical protein CATMIT_01278 [Catenibacterium mitsuokai DSM 15897] gi|224525036|gb|EEF94141.1| hypothetical protein CATMIT_01278 [Catenibacterium mitsuokai DSM 15897] Length = 423 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 11/114 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH---VLFVGPPGLGKTTLAQVVAREL 78 +RP L++ GQ ++ + K DH ++ GPPG GKTT+A+ +A +L Sbjct: 10 MRPIGLDDVIGQKHLVGENRLLKQFVKK-----DHPMSIILYGPPGCGKTTIAKALAHDL 64 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF--IDEIHRLSIIVEEILYPAME 130 + +R + K ++ ++T + + LF +DE+HRL+ ++ L P +E Sbjct: 65 NIPYRIFNASTGNKK-EMDQIITEAKLSEGLFVIVDEVHRLNKAKQDHLLPYIE 117 >gi|134101955|ref|YP_001107616.1| putative sporulation protein (partial match) [Saccharopolyspora erythraea NRRL 2338] gi|291007034|ref|ZP_06565007.1| putative sporulation protein (partial match) [Saccharopolyspora erythraea NRRL 2338] gi|133914578|emb|CAM04691.1| putative sporulation protein (partial match) [Saccharopolyspora erythraea NRRL 2338] Length = 1141 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 84/214 (39%), Gaps = 47/214 (21%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKA---------GDLAALLTNL 103 H++F GPPG GKTT+A++ LGV R G VI G A T Sbjct: 915 HLIFGGPPGTGKTTVARLYGEILAALGVLAR---GQVIEVGRANLVGEYVGHTAQRTTEA 971 Query: 104 EDR---DVLFIDEIHRLSII----------VEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 DR VLFIDE + LS + L MED + +++V A + Sbjct: 972 FDRARGGVLFIDEAYTLSSQRGSGTDFGREAIDTLVKLMEDHRDEVVV----VAAGYEEQ 1027 Query: 151 LSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209 + F L NP L RF +R Y ++L TIV + A G T Sbjct: 1028 MEDF----------LAANPGLSSRFSHRVRFADYTNDELVTIVTQHAASAGYECTGPTVA 1077 Query: 210 EIAMRSRGTPRIA----GRLLRRVRDFAEVAHAK 239 + PR A GR R+V D A HAK Sbjct: 1078 ALRAHFVAVPRGASFGNGRYARQVMDAAVTRHAK 1111 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 39/162 (24%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKA-------GDLAALLTNLED 105 H++F G PG GKTT+A++ + ELGV RS + +A G A T + Sbjct: 632 HLVFTGSPGTGKTTVARLYGKILAELGV-LRSGQLVEVGRADLVASIVGGTAMKTTECFE 690 Query: 106 R---DVLFIDEIHRLSIIVE----------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R VLFIDE + LS + L MED + D++V ++ Sbjct: 691 RALGGVLFIDEAYTLSASSGSGADFGREAIDTLVKLMEDHRDDIVV-----------IVA 739 Query: 153 RFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQ 193 +TL R L +NP L RF I Y DL TIV+ Sbjct: 740 GYTL---EMRKFLASNPGLGSRFSRTIEFADYSSADLVTIVE 778 >gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans 345-15] gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans 345-15] Length = 329 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPR+L+E Q E L F+ + H+LF GPPG GKTT A +A +L G N Sbjct: 15 RPRSLKEIVNQKEIVERLSKFVAEKN-----MPHLLFAGPPGTGKTTAAHALAHDLYGDN 69 Query: 82 F 82 + Sbjct: 70 Y 70 >gi|323455953|gb|EGB11820.1| hypothetical protein AURANDRAFT_36060 [Aureococcus anophagefferens] Length = 571 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT +A+ VA E G NF S GP + G+ A + +L D+ + Sbjct: 300 VLFYGPPGCGKTLIAKAVANECGANFISVKGPELLTMWFGESEANVRSLFDKARAAAPCI 359 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 360 LFFDEMDSIA 369 >gi|260889193|ref|ZP_05900456.1| ATPase, AAA family [Leptotrichia hofstadii F0254] gi|260861253|gb|EEX75753.1| ATPase, AAA family [Leptotrichia hofstadii F0254] Length = 407 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 18/120 (15%) Query: 23 RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP++L++F GQ V L+ IE R ++ +F G PG GKTTLA+++A ++ Sbjct: 19 RPKSLDDFYGQKRLVGENGILRKIIE----RGNFMN-AIFWGAPGTGKTTLAEIIADKMN 73 Query: 80 VNFRSTSGPVIAKAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 ++ + + A D+ ++ TN + + +LF+DEIHR + + ++ L +E+ Sbjct: 74 YHYEYLNA-IKASVTDIKNISDKAHSSFHTNGQ-QTLLFLDEIHRFNKLQQDSLLEDLEN 131 >gi|189423560|ref|YP_001950737.1| ATP-dependent protease La [Geobacter lovleyi SZ] gi|189419819|gb|ACD94217.1| ATP-dependent protease La [Geobacter lovleyi SZ] Length = 772 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L + +AR LG F R + G V +A G + L R Sbjct: 353 LCFVGPPGVGKTSLGRSIARSLGRKFVRVSLGGVRDEAEIRGHRRTYIGALPGRIIKEIY 412 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 VL +DEI +L S + E+L P + +D LD V Sbjct: 413 RCGSNNPVLMLDEIDKLSHDFRGDPSSALLEVLDPEQNFSFQDHYLD-----------VP 461 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 +LS+ I ++ + PL+DR I IRL Y E+ + I R Sbjct: 462 FDLSKVMFITTANQMDPIPGPLKDRMEI-IRLAGYSSEEKQHIANR 506 >gi|319652986|ref|ZP_08007091.1| hypothetical protein HMPREF1013_03706 [Bacillus sp. 2_A_57_CT2] gi|317395335|gb|EFV76068.1| hypothetical protein HMPREF1013_03706 [Bacillus sp. 2_A_57_CT2] Length = 275 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 +L GPPG GKT LAQ +A+ELG F STSG V A + L N V Sbjct: 190 ILLYGPPGTGKTLLAQAIAKELGATFFSTSGSGFNELFVGVGASRVRNLFQNARKHAPAV 249 Query: 109 LFIDEIHRLS 118 +FIDE+ L+ Sbjct: 250 VFIDEVDALA 259 >gi|296108730|ref|YP_003615679.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME] gi|295433544|gb|ADG12715.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME] Length = 903 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ IE E + VL VGPPG GKT LA+ VA E Sbjct: 177 TYEDIGGLKEEVRKVREMIELPMKHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236 Query: 78 LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLS 118 G NF +GP I +L + E+ ++FIDEI ++ Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIA 285 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/34 (61%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E G NF S GP I Sbjct: 489 VLLFGPPGTGKTLLAKAVANEAGANFISVKGPEI 522 >gi|325066414|ref|ZP_08125087.1| recombination factor protein RarA [Actinomyces oris K20] Length = 400 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 11/113 (9%) Query: 54 LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL------AALLTNLEDRD 107 L ++ GPPG GKTT+A+++A G+ F S + DL AA + Sbjct: 6 LSSIILWGPPGCGKTTIARLLADRTGLVFEQVSA-TFSGVADLRKVFAAAARRREIGQGT 64 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLI 157 +LF+DEIHR + ++ P +ED + ++VG S ++N LSR ++ Sbjct: 65 LLFVDEIHRFNRAQQDSFLPYVEDGTV-VLVGATTENPSFELNGALLSRCQVM 116 >gi|167044405|gb|ABZ09082.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine crenarchaeote HF4000_APKG6D3] Length = 386 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ + G E+ K+F+E + +L VGPPG+GKTTLA + A++ G + Sbjct: 8 RPKNFLDLIGNEES---RKLFVEWFTNWKKGTRPILLVGPPGIGKTTLANLAAKQFGYDL 64 Query: 83 RSTSGPVIAKAGDLAALLTN-LEDRDVL-----FIDEI 114 S + + ++ +L+ L ++ VL FIDE+ Sbjct: 65 ISLNASDVRNKQNIHEILSPVLGNQTVLGTPMIFIDEV 102 >gi|302799697|ref|XP_002981607.1| hypothetical protein SELMODRAFT_114799 [Selaginella moellendorffii] gi|300150773|gb|EFJ17422.1| hypothetical protein SELMODRAFT_114799 [Selaginella moellendorffii] Length = 366 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 43/207 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLT-------NLEDRD 107 +LF GPPG GKT+ A+V+A + GV V+ G+ LL+ + D Sbjct: 125 ILFEGPPGCGKTSCARVIASQAGVPLLYVPLEVVTSKYYGESERLLSSVFNAGNDFPDGA 184 Query: 108 VLFIDEIHRLSIIVEEILYPA-----------MEDFQLDLMVGEGPSARSVKINLSRFTL 156 ++F+DEI L+ + ++ A M+ F+ D R + Sbjct: 185 IVFLDEIDSLATSRDSDMHEATRRMLSVLLRQMDGFEQD----------------KRIVV 228 Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216 IAAT R L L RF I + +++ + IV + A+ ++ + +A S Sbjct: 229 IAATNRKQDLDPALLSRFDASITFDLPDLQTREEIVAQYAR----HLSRKELSSVAATSE 284 Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITR 243 G ++GR LR V AE A I R Sbjct: 285 G---MSGRDLRDVCQQAERKWASKILR 308 >gi|300707639|ref|XP_002996019.1| hypothetical protein NCER_100948 [Nosema ceranae BRL01] gi|239605277|gb|EEQ82348.1| hypothetical protein NCER_100948 [Nosema ceranae BRL01] Length = 305 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 24/210 (11%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ LE G V+ LK + + ++ H+LF GPPG GKT+ A++ A +L Sbjct: 9 RPKDLESVIGNVDTLETLKCIL-----KDHSMPHLLFTGPPGTGKTSSAKIFAFQL---L 60 Query: 83 RSTSGPVIAKAGD---LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 S G + A D + + T ++D + I + II++E D M Sbjct: 61 GSKEGILELNASDDRGIDTVRTLIKDFAMKKILNVPFKIIILDE----------CDSMTT 110 Query: 140 EGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 A R ++I S I + P+Q R + +R + E + +++ +Q+ + Sbjct: 111 AAQQAMRRIMEIYSSECKFILICNDFSKIFEPIQSRCAV-LRFDKIESKVIESCLQKIVQ 169 Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 + +TDEA I G R + +L+ Sbjct: 170 AEHMNITDEALSFIIYICDGDIRQSLNILQ 199 >gi|159041123|ref|YP_001540375.1| AAA family ATPase, CDC48 subfamily protein [Caldivirga maquilingensis IC-167] gi|157919958|gb|ABW01385.1| AAA family ATPase, CDC48 subfamily [Caldivirga maquilingensis IC-167] Length = 735 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 17/118 (14%) Query: 24 PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR E G +E A ++ +E E H VL +GPPG GKT LA+ V Sbjct: 177 PRVTWEDIGDLEEAKQKIRELVELPLKHPELFRHLGIEPPKGVLLIGPPGTGKTLLAKAV 236 Query: 75 ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 A E F S +GP I G+ A L + D ++FIDEI ++ EE+ Sbjct: 237 ANEADAYFVSINGPEIVSKYYGESEARLREIFDEAKRNAPAIIFIDEIDSIAPKREEV 294 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 495 ILLFGPPGTGKTLLAKAVANESGANFIAVRGPEI 528 >gi|42528086|ref|NP_973184.1| DNA polymerase III subunits gamma and tau [Treponema denticola ATCC 35405] gi|41819131|gb|AAS13103.1| DNA polymerase III, gamma and tau subunits, putative [Treponema denticola ATCC 35405] Length = 612 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 99/231 (42%), Gaps = 31/231 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+ E+ GQ + L+ IEA K + H LF GP G GKT+ A+++A+ L Sbjct: 11 RPQRFEDLLGQEFVAATLQKSIEAGK-----IAHAYLFSGPRGCGKTSSARILAKVLNC- 64 Query: 82 FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQL 134 GP G + +T DV+ ID S+ I +EIL+P + Sbjct: 65 ---AEGPRPTPCGHCTSCEEITAGSCLDVIEIDGASNTSVNDVRQIKDEILFPPNSNRYK 121 Query: 135 DLMVGE----GPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--Y 183 ++ E SA ++++ I ATT + + ++ R + NF Sbjct: 122 IYIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSRCQ---QFNFKLV 178 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 IE LK + A G++ DEA IA + G+ R A L +V F++ Sbjct: 179 SIEILKQALADAAAELGISADDEALYWIAREATGSVRDAYTLFDQVAAFSD 229 >gi|15613820|ref|NP_242123.1| recombination factor protein RarA [Bacillus halodurans C-125] gi|10173873|dbj|BAB04976.1| BH1257 [Bacillus halodurans C-125] Length = 428 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 5/111 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++E GQ K+ A L ++ GPPG+GKT++AQ +A + Sbjct: 10 MRPSNIDEVIGQQHLVGEGKIIRRMVDAGQ--LSSMILYGPPGVGKTSIAQAIAGSTDTH 67 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 ++ + V+ D+ ++ + + +L +DE+HRL ++ L P +E Sbjct: 68 YKLLNA-VVNNKKDMEIVVEEAKMSGQLILILDEVHRLDKGKQDFLLPHLE 117 >gi|163784255|ref|ZP_02179175.1| Lon protease [Hydrogenivirga sp. 128-5-R1-1] gi|159880478|gb|EDP74062.1| Lon protease [Hydrogenivirga sp. 128-5-R1-1] Length = 727 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 37/174 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L + +AR LG F R G V +A G + L Sbjct: 335 LCFVGPPGVGKTSLGKSIARALGRKFTRIALGGVRDEAEIRGHRRTYVGAMPGRIIQALK 394 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + ++ V+ +DE+ +L + + E+L P +DL +G V NLS Sbjct: 395 QVGTKNPVIMLDEVDKLASDFRGDPASALLEVLDPEQNKEFVDLYLG-------VPFNLS 447 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGL 201 I R+ + PL DR + IR+ Y E+ K ++ + K TGL Sbjct: 448 EVMFICTANRIDTIPRPLLDRMEV-IRIPGYSEEEKLHIAKKYLIPKQLKETGL 500 >gi|15897351|ref|NP_341956.1| AAA ATPase family protein [Sulfolobus solfataricus P2] gi|13813572|gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus P2] Length = 769 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 17/136 (12%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDH-------- 56 G S + QE S P+ E G +E ++ +E E H Sbjct: 178 GRTSLEIRQEPVKESAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKG 237 Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLEDRD--V 108 VL GPPG+GKT LA+ +A E+G F S +GP I G+ L + E + Sbjct: 238 VLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNSPAI 297 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 298 IFIDEIDAIAPKREEV 313 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 513 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 546 >gi|15669345|ref|NP_248150.1| cell division protein CDC48 [Methanocaldococcus jannaschii DSM 2661] gi|2492505|sp|Q58556|Y1156_METJA RecName: Full=Cell division cycle protein 48 homolog MJ1156 gi|1591785|gb|AAB99153.1| cell division control protein 48 (cdc48), AAA family [Methanocaldococcus jannaschii DSM 2661] Length = 903 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ IE E + VL VGPPG GKT LA+ VA E Sbjct: 177 TYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236 Query: 78 LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLS 118 G NF +GP I +L + E+ ++FIDEI ++ Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIA 285 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/34 (61%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E G NF S GP I Sbjct: 489 VLLFGPPGTGKTLLAKAVANESGANFISVKGPEI 522 >gi|242081425|ref|XP_002445481.1| hypothetical protein SORBIDRAFT_07g020190 [Sorghum bicolor] gi|241941831|gb|EES14976.1| hypothetical protein SORBIDRAFT_07g020190 [Sorghum bicolor] Length = 792 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108 VLF GPPG GKT LA+ +A+E NF S GP + G+ + + +L D+ + Sbjct: 521 VLFYGPPGCGKTMLAKAIAKECKANFISVKGPELLTMWYGESESNVRDLFDKARSAAPSI 580 Query: 109 LFIDEIHRLSI 119 LF DE+ +++ Sbjct: 581 LFFDELDSIAV 591 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL-EDRD-----V 108 +L GPPG GKT LA+ +A E G +F +GP I AG A L N+ ED + + Sbjct: 247 ILLYGPPGTGKTLLARAIASESGAHFLVVNGPEIMSMMAGQSEANLRNVFEDAEKSAPSI 306 Query: 109 LFIDEI 114 +F+DEI Sbjct: 307 IFMDEI 312 >gi|242373927|ref|ZP_04819501.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis M23864:W1] gi|242348481|gb|EES40083.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis M23864:W1] Length = 422 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 6/133 (4%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP ++E Q + + L ++F GPPG+GKT++A+ ++ Sbjct: 8 SRMRPMNIDEIISQQHLVGPKGIIRRMVDTKR--LSSMIFYGPPGIGKTSIAKAISGSTQ 65 Query: 80 VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR + V D+ ++ + + +L +DEIHRL ++ L P +E+ ++ ++ Sbjct: 66 FKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123 Query: 138 VGEGPSARSVKIN 150 +G S IN Sbjct: 124 IGATTSNPYHAIN 136 >gi|123469082|ref|XP_001317755.1| spermatogenesis associated factor [Trichomonas vaginalis G3] gi|121900497|gb|EAY05532.1| spermatogenesis associated factor, putative [Trichomonas vaginalis G3] Length = 796 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ + + N+ D+ V Sbjct: 509 VLFYGPPGCGKTLLAKAVASECSANFISIKGPELLSMWVGESESNVRNVFDKARQAAPCV 568 Query: 109 LFIDEIHRL 117 LF DE+ L Sbjct: 569 LFFDELDSL 577 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108 +L GPPG GK+ +A+ +A E G F +GP I G+L ++ ++ + Sbjct: 236 ILLYGPPGCGKSLIARAIANETGAAFYLINGPEIMSKMSGESEGNLRSIFEKAQETSPSI 295 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 296 IFIDEIDSVA 305 >gi|323353571|ref|ZP_08088104.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis VMC66] gi|322121517|gb|EFX93280.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis VMC66] Length = 422 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|212542167|ref|XP_002151238.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224] gi|210066145|gb|EEA20238.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224] Length = 534 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 22/150 (14%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP++L+E GQ N L+ IE + + ++ G G GKTT+A+V+A +G Sbjct: 129 MRPKSLDEVCGQDLVGPNGILRSLIEQDR-----VPSMILWGGAGTGKTTIARVIACMVG 183 Query: 80 VNF----RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F +TSG IA+ + A N + +LF DEIHR S +++L +E Sbjct: 184 SRFVEINSTTSG--IAECKKIFAEARNELGLTGRKTILFCDEIHRFSKTQQDVLLGPVES 241 Query: 132 FQLDLMVG--EGPSARSVKINLSR---FTL 156 + L+ E PS + LSR FTL Sbjct: 242 GVVTLIAATTENPSFKVQNALLSRCRTFTL 271 >gi|119945376|ref|YP_943056.1| recombination factor protein RarA [Psychromonas ingrahamii 37] gi|119863980|gb|ABM03457.1| Recombination protein MgsA [Psychromonas ingrahamii 37] Length = 442 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 18/139 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVAR 76 +RP+ + GQ I A K AL++ ++ GPPG GKTTLA+++A Sbjct: 18 MRPKFFSNYIGQAH-------IIGAGKPLRNALENGAAHSMILWGPPGTGKTTLAELIAS 70 Query: 77 ELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 + TSG I A ++A R +LF+DE+HR + ++ P +ED Sbjct: 71 YCDAHVERLSAVTSGIKEIRAAIEIAQQNRTNGIRTLLFVDEVHRFNKAQQDAFLPYIED 130 Query: 132 FQLDLMVGEGPSARSVKIN 150 + L +G S ++N Sbjct: 131 GTI-LFIGATTENPSFELN 148 >gi|57012999|sp|Q5UZE5|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit Length = 325 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ I RP+TL++ G LK ++ L H+LF GP G GKTT A Sbjct: 12 REEVWIEKYRPQTLDDVMGHENIVGRLKSYVSRND-----LSHMLFSGPAGTGKTTCATA 66 Query: 74 VAREL-GVNFR 83 +AREL G ++R Sbjct: 67 IARELYGDDWR 77 >gi|289192266|ref|YP_003458207.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp. FS406-22] gi|288938716|gb|ADC69471.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp. FS406-22] Length = 903 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ IE E + VL VGPPG GKT LA+ VA E Sbjct: 177 TYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236 Query: 78 LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLS 118 G NF +GP I +L + E+ ++FIDEI ++ Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIA 285 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/34 (61%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E G NF S GP I Sbjct: 489 VLLFGPPGTGKTLLAKAVANESGANFISVKGPEI 522 >gi|289581577|ref|YP_003480043.1| Replication factor C [Natrialba magadii ATCC 43099] gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099] Length = 341 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 35/170 (20%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77 I RP L+E G L+ ++E + L H++F GP G GKTT AQ +ARE Sbjct: 32 IEKYRPEYLDEIKGHENIVPRLQRYVEQ-----DDLPHLMFAGPAGTGKTTAAQAIAREV 86 Query: 78 ---------LGVNFRSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 L +N G + + D A D ++F+DE L+ + L Sbjct: 87 YDDDWRENFLELNASDQRGIDVVRDRIKDFARASFGGYDHRIIFLDEADALTSDAQSALR 146 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176 ME F N +RF L + + +P+Q R + Sbjct: 147 RTMEQFS----------------NNTRFIL--SCNYSSQIIDPIQSRCAV 178 >gi|328719677|ref|XP_001952578.2| PREDICTED: katanin p60 ATPase-containing subunit A1-like [Acyrthosiphon pisum] Length = 474 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 10/128 (7%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + + Sbjct: 229 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTMTSKYRGESEKLVRLLFEMAKIHSPST 288 Query: 109 LFIDEIHRL-SIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGLL 166 +FIDE+ L S+ E + A F+ +L++ +G ++ S + N ++AAT + Sbjct: 289 IFIDEVDSLCSLRGSEGEHEASRRFKAELLIHMDGLNSSSDEENNQSIMVLAATNHPWDI 348 Query: 167 TNPLQDRF 174 + + RF Sbjct: 349 DDAFRRRF 356 >gi|284173309|ref|ZP_06387278.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2] gi|261602026|gb|ACX91629.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2] Length = 759 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 17/136 (12%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDH-------- 56 G S + QE S P+ E G +E ++ +E E H Sbjct: 168 GRTSLEIRQEPVKESAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKG 227 Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLEDRD--V 108 VL GPPG+GKT LA+ +A E+G F S +GP I G+ L + E + Sbjct: 228 VLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNSPAI 287 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 288 IFIDEIDAIAPKREEV 303 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 503 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 536 >gi|268317253|ref|YP_003290972.1| ATP-dependent protease La [Rhodothermus marinus DSM 4252] gi|262334787|gb|ACY48584.1| ATP-dependent protease La [Rhodothermus marinus DSM 4252] Length = 840 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 48/192 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L + +AR LG F R + G V +A G + L R Sbjct: 386 LCFVGPPGVGKTSLGKSIARALGRKFVRVSLGGVRDEAEIRGHRRTYVGALPGRIIQGIK 445 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 V +DEI +L + + E+L P A D L+L + Sbjct: 446 KAGTSNPVFMLDEIDKLGADFRGDPASALLEVLDPEQNYAFSDHYLEL-----------E 494 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLT 199 +LSR IA + L+ PL+DR I + + E L + + Q G K Sbjct: 495 YDLSRVLFIATANYLDLIPAPLRDRMEIIEISGYTQDEKLQIAKRYLVPRQVEQHGLKPE 554 Query: 200 GLAVTDEAACEI 211 ++TDEA EI Sbjct: 555 QFSITDEALREI 566 >gi|150401347|ref|YP_001325113.1| AAA family ATPase, CDC48 subfamily protein [Methanococcus aeolicus Nankai-3] gi|150014050|gb|ABR56501.1| AAA family ATPase, CDC48 subfamily [Methanococcus aeolicus Nankai-3] Length = 723 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E G NF + +GP I +L + + E+ + Sbjct: 213 VLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEDAEEEAPSI 272 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 273 IFIDEIDSVA 282 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E NF S GP I Sbjct: 485 VLLFGPPGTGKTMLAKAVANESQANFISVKGPEI 518 >gi|262283467|ref|ZP_06061233.1| recombination factor protein RarA [Streptococcus sp. 2_1_36FAA] gi|262260958|gb|EEY79658.1| recombination factor protein RarA [Streptococcus sp. 2_1_36FAA] Length = 422 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPSDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|167383517|ref|XP_001736564.1| transitional endoplasmic reticulum ATPase [Entamoeba dispar SAW760] gi|165900980|gb|EDR27180.1| transitional endoplasmic reticulum ATPase, putative [Entamoeba dispar SAW760] Length = 804 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT +A+ VA E NF S GP + G+ A + N+ D+ V Sbjct: 511 VLFYGPPGCGKTMMAKAVANECQANFISVKGPELLTMWFGESEANVRNIFDKARGAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ +A E G F +GP I AG+ + L E+ + + Sbjct: 238 ILLYGPPGCGKTMIARAIANETGAFFFLINGPEIMSKMAGESESNLRRAFEEAEKNSPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDSIA 307 >gi|156553266|ref|XP_001599519.1| PREDICTED: similar to werner helicase interacting protein [Nasonia vitripennis] Length = 462 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 23/140 (16%) Query: 22 LRPRTLEEFTGQVEACSNL---KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77 +RP L ++ GQ S+L K + E +L+ GPPG GKT+L V+ +E Sbjct: 73 MRPNELSDYVGQ----SHLIGPKTLLHDLLRNGEIPSMILW-GPPGCGKTSLVNVIMQES 127 Query: 78 -----LGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILY 126 + V F S + D+ +T E+ R V+F+DEIHR + + ++I Sbjct: 128 KKLSDIPVKFIKLSA-TTSSINDVRKAVTEAENQAKQGRRTVVFMDEIHRFNKLQQDIFL 186 Query: 127 PAME--DFQLDLMVGEGPSA 144 P +E F L E PS+ Sbjct: 187 PHVEAGTFILIGATTENPSS 206 >gi|151944326|gb|EDN62604.1| protein with DNA-dependent ATPase and ssDNA annealing activities involved in maintenance of genome [Saccharomyces cerevisiae YJM789] Length = 587 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 23/148 (15%) Query: 22 LRPRTLEEFTGQVEACS--NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 LRP+ L ++ GQ S N +F + + ++ GPPG+GKT+LA+++ + Sbjct: 139 LRPKELRDYVGQQHILSQDNGTLFKYIKQG---TIPSMILWGPPGVGKTSLARLLTKTAT 195 Query: 80 VN----------FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122 + F + A +L + + R VLFIDEIHR + + + Sbjct: 196 TSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEIHRFNKVQQ 255 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKIN 150 ++L P +E+ + +++G S ++N Sbjct: 256 DLLLPHVENGDI-ILIGATTENPSFQLN 282 >gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2] gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2] Length = 327 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 17/126 (13%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP+T ++ GQ + L+ +IE + L H+LF GP G+GKTT A +AR + Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLRSYIER-----DDLPHLLFAGPAGVGKTTSATAIARAI 72 Query: 79 -GVNFRSTSGPVIA-----------KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 G ++R + A + + A D V+F+DE L+ + L Sbjct: 73 YGDDWRGNFLELNASDERGIDVVRDRIKNFARSSFGGHDYRVIFLDEADSLTNDAQSALR 132 Query: 127 PAMEDF 132 ME F Sbjct: 133 RTMEQF 138 >gi|242769588|ref|XP_002341796.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500] gi|218724992|gb|EED24409.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500] Length = 528 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 30/150 (20%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP++L+E GQ N L+ IE + P GKTT+A+V+A +G Sbjct: 131 MRPKSLDEVCGQDLVGPNGILRSLIEQDRV-------------PSTGKTTIARVIASMVG 177 Query: 80 VNF----RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F +TSG IA+ + A N + R +LF DEIHR S +++L +E Sbjct: 178 SRFVEINSTTSG--IAECKKIFAEARNELGLMGRRTILFCDEIHRFSKTQQDVLLGPVES 235 Query: 132 FQLDLMVG--EGPSARSVKINLSR---FTL 156 + L+ E PS + LSR FTL Sbjct: 236 GVVTLIAATTENPSFKVQNALLSRCRTFTL 265 >gi|149908481|ref|ZP_01897144.1| putative ATPase protein [Moritella sp. PE36] gi|149808644|gb|EDM68579.1| putative ATPase protein [Moritella sp. PE36] Length = 444 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 9/116 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + ++ GQ K A A A +L+ GPPG GKTT+A+++A Sbjct: 20 MRPEKMSQYIGQTHILGEGKPLHRALLA-GHAHSMILW-GPPGTGKTTIAEMIAHYCDAK 77 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED 131 V + D+ + +D R +LF+DE+HR + ++ P +ED Sbjct: 78 VERVHA-VTSGIKDIRLAIEKAKDNAIQGFRTILFVDEVHRFNKSQQDAFLPHIED 132 >gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC 43049] gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC 43049] Length = 345 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ I RP+TL++ G LK ++ L H+LF GP G GKTT A Sbjct: 32 REEVWIEKYRPQTLDDVMGHENIVGRLKSYVSRND-----LSHMLFSGPAGTGKTTCATA 86 Query: 74 VAREL-GVNFR 83 +AREL G ++R Sbjct: 87 IARELYGDDWR 97 >gi|11498884|ref|NP_070113.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304] gi|2649294|gb|AAB89960.1| cell division control protein, AAA family, putative [Archaeoglobus fulgidus DSM 4304] Length = 352 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 22/183 (12%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALDHVLFVGPPGLGKTTLAQV 73 + ++R TL++ GQ EA KV +E K A +VLF GPPG GKT +A+ Sbjct: 95 ETEIVRDITLDDVVGQEEAKRKAKVILEYLRNPEKFGKWAPKNVLFYGPPGTGKTMMAKA 154 Query: 74 VARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSII--VEE 123 ++ E F S + GD A + L +R ++F+DE +++ +E Sbjct: 155 LSNEAKTPFLSVKSTKLIGEHVGDGARRVHELYERARQLAPCIVFLDEFDAIALDRGYQE 214 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF--GIPIRLN 181 I E L +G ++ IAAT RV LL ++ RF I RL Sbjct: 215 IRGDVSEIVNALLTELDGTNSN------EGICTIAATNRVELLDASIRSRFEEEIEFRLP 268 Query: 182 FYE 184 YE Sbjct: 269 SYE 271 >gi|6324111|ref|NP_014181.1| Mgs1p [Saccharomyces cerevisiae S288c] gi|1730822|sp|P40151|WRIP1_YEAST RecName: Full=DNA-dependent ATPase MGS1; AltName: Full=Maintenance of genome stability protein 1 gi|1302233|emb|CAA96121.1| unnamed protein product [Saccharomyces cerevisiae] gi|51013831|gb|AAT93209.1| YNL218W [Saccharomyces cerevisiae] gi|190409192|gb|EDV12457.1| DNA-dependent ATPase MGS1 [Saccharomyces cerevisiae RM11-1a] gi|207341862|gb|EDZ69804.1| YNL218Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256272347|gb|EEU07330.1| Mgs1p [Saccharomyces cerevisiae JAY291] gi|259149146|emb|CAY82388.1| Mgs1p [Saccharomyces cerevisiae EC1118] gi|285814444|tpg|DAA10338.1| TPA: Mgs1p [Saccharomyces cerevisiae S288c] gi|323307497|gb|EGA60768.1| Mgs1p [Saccharomyces cerevisiae FostersO] gi|323346818|gb|EGA81097.1| Mgs1p [Saccharomyces cerevisiae Lalvin QA23] gi|323352874|gb|EGA85176.1| Mgs1p [Saccharomyces cerevisiae VL3] Length = 587 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 23/148 (15%) Query: 22 LRPRTLEEFTGQVEACS--NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 LRP+ L ++ GQ S N +F + + ++ GPPG+GKT+LA+++ + Sbjct: 139 LRPKELRDYVGQQHILSQDNGTLFKYIKQG---TIPSMILWGPPGVGKTSLARLLTKTAT 195 Query: 80 VN----------FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122 + F + A +L + + R VLFIDEIHR + + + Sbjct: 196 TSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEIHRFNKVQQ 255 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKIN 150 ++L P +E+ + +++G S ++N Sbjct: 256 DLLLPHVENGDI-ILIGATTENPSFQLN 282 >gi|302676826|ref|XP_003028096.1| hypothetical protein SCHCODRAFT_70373 [Schizophyllum commune H4-8] gi|300101784|gb|EFI93193.1| hypothetical protein SCHCODRAFT_70373 [Schizophyllum commune H4-8] Length = 925 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 33/163 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPV-------------IAKAGDL--AALL 100 +LFVGPPG GKT+L Q VAR L + F+ S G V +A A L AL Sbjct: 428 LLFVGPPGTGKTSLGQSVARALDLPFQRISLGGVRDEAEIRGHRRTYVASAPGLIVQALR 487 Query: 101 TNLEDRDVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 V+ +DE+ +L S + E+L P D + SV ++L Sbjct: 488 KAGRPDFVMLLDEVDKLGASNFHGDPSAALLEVLDPEQNHSFNDHYL-------SVPVDL 540 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 SR I + ++ PL DR + +RL+ Y ++ +I +R Sbjct: 541 SRVLFILTANSLDTMSGPLLDRCEV-VRLSGYTYDEKMSIARR 582 >gi|15605788|ref|NP_213165.1| Lon protease [Aquifex aeolicus VF5] gi|3913992|sp|O66605|LON_AQUAE RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|2982953|gb|AAC06568.1| Lon protease [Aquifex aeolicus VF5] Length = 795 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 99/256 (38%), Gaps = 62/256 (24%) Query: 59 FVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAALL 100 FVGPPG+GKT+L + +A LG F R+ G + + + A+ Sbjct: 368 FVGPPGVGKTSLGRSIAEALGRKFVRIALGGIRDEAEIRGHRRTYVGAMPGRI--IQAIK 425 Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V+ +DEI +L+I + E+L P DL +G + +LS Sbjct: 426 QAGTKNPVIMLDEIDKLAISFQGDPAAALLEVLDPEQNKKFTDLYIG-------IPFDLS 478 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLA-----V 203 I R + PL DR + + + E E L K ++ + L G + Sbjct: 479 EVIFICTGNRADTIPTPLLDRMELIMLSGYSEEEKLFIAKKHLIPKLIPLHGFSPEEIEF 538 Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263 TDEA EI +R + A + + R+I+ A L ++A+ K+ ++ Sbjct: 539 TDEAILEI-----------------IRGYTREAGVRNLQRQIS-AVLRKIAVKKLQGEKG 580 Query: 264 DLRYLTMIARNFGGGP 279 + R G P Sbjct: 581 PFNITPELVRKLLGVP 596 >gi|224113871|ref|XP_002316599.1| predicted protein [Populus trichocarpa] gi|222859664|gb|EEE97211.1| predicted protein [Populus trichocarpa] Length = 553 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 28/165 (16%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 + +S ++ +RPRT+++ GQ S + A R + ++ GPPG GKT Sbjct: 119 NHTISNDEPLAERMRPRTIDDVIGQDLLLSQNSLLRSAI--RCSRIPSIILWGPPGTGKT 176 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-----------------RDVLFI 111 ++A+ + V ++ G + L+A+ ++D R VLF+ Sbjct: 177 SIARAI-----VTSANSQGSSSYRFVSLSAVTCGVKDARDAFEDARKFKLKNSKRTVLFL 231 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSR 153 DE+HR + ++ P +ED + + +G E PS V LSR Sbjct: 232 DEVHRFNKSQQDSFLPVIEDGTI-VFIGATTENPSFHLVTPLLSR 275 >gi|328945355|gb|EGG39508.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1087] Length = 422 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|325180218|emb|CCA14621.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 603 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 5/99 (5%) Query: 24 PRTLEEFTGQVEACSNLKVFIEA-AKARAEALDH---VLFVGPPGLGKTTLAQVVARELG 79 P T+ + Q + L ++E A+ R + + ++ GPPG GK+TL Q +AR LG Sbjct: 121 PATISKLCVQKRKYNQLYRWVEENAQIRGKCMQRKRLMILSGPPGCGKSTLVQCIARTLG 180 Query: 80 VNFRS-TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 VN R P K G+ A + + E+ ++E R Sbjct: 181 VNVRKWKESPNFYKNGNHALPIYSFENSFTTPMEEFTRF 219 >gi|50365487|ref|YP_053912.1| cell division protein [Mesoplasma florum L1] gi|81391677|sp|Q6F0E5|FTSH_MESFL RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|50364043|gb|AAT76028.1| cell division protein [Mesoplasma florum L1] Length = 650 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQ-VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 G+ E +D+ +EE + VE LK + A+A A A VL GPPG Sbjct: 161 GMGKNRARAEKSDVKFANVAGIEEEKSELVELVDYLKFPAKYAEAGARAPKGVLMEGPPG 220 Query: 65 LGKTTLAQVVARELGVNFRSTSG 87 GKT LA+ VA E GV+F S +G Sbjct: 221 TGKTLLAKAVAGEAGVSFFSIAG 243 >gi|125717113|ref|YP_001034246.1| recombination factor protein RarA [Streptococcus sanguinis SK36] gi|125497030|gb|ABN43696.1| Chromosome segregation helicase, putative [Streptococcus sanguinis SK36] gi|325697800|gb|EGD39684.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK160] Length = 422 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAK-----AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEVAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|67484218|ref|XP_657329.1| cell division cycle protein 48 [Entamoeba histolytica HM-1:IMSS] gi|56474515|gb|EAL51880.1| cell division cycle protein 48, putative [Entamoeba histolytica HM-1:IMSS] Length = 794 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT +A+ VA E NF S GP + G+ A + N+ D+ V Sbjct: 502 VLFYGPPGCGKTMMAKAVANECQANFISVKGPELLTMWFGESEANVRNIFDKARGAAPCV 561 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 562 LFFDELDSIA 571 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ +A E G F +GP I AG+ + L E+ + + Sbjct: 229 ILLYGPPGCGKTMIARAIANETGAFFFLINGPEIMSKMAGESESNLRRAFEEAEKNSPAI 288 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 289 IFIDEIDSIA 298 >gi|324992260|gb|EGC24182.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK405] gi|325688550|gb|EGD30567.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK72] Length = 422 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|217970180|ref|YP_002355414.1| recombination factor protein RarA [Thauera sp. MZ1T] gi|217507507|gb|ACK54518.1| AAA ATPase central domain protein [Thauera sp. MZ1T] Length = 474 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+E GQ K A ++R ++ GPPG+GKTTLA+++AR Sbjct: 19 MRPHTLDEVAGQSHLLGPGKPLRLAFESRRP--HSMILWGPPGVGKTTLARLMARGFDAE 76 Query: 82 FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + S I +A A +LF+DE+HR + ++ P +E Sbjct: 77 FVALSAVFSGVKEIREAIQQAQAAKARGRHTILFVDEVHRFNKAQQDAFLPYVE 130 >gi|158320717|ref|YP_001513224.1| recombination factor protein RarA [Alkaliphilus oremlandii OhILAs] gi|158140916|gb|ABW19228.1| AAA ATPase central domain protein [Alkaliphilus oremlandii OhILAs] Length = 420 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 16/106 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE+ GQ + K+ +++A + +++F GP G GKTT+A ++A+ Sbjct: 8 VRPTKLEDIVGQKHILGSGKLLNRILESKA--IPNMIFYGPSGTGKTTVANIIAQSSNKK 65 Query: 82 FRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 F +G VIA+ G L + + +L+IDE+H L+ Sbjct: 66 FYKINGTNANIEDIKRVIAQIGTLHTM-----NGILLYIDELHYLN 106 >gi|325693863|gb|EGD35782.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK150] gi|327468709|gb|EGF14188.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK330] Length = 422 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|146303255|ref|YP_001190571.1| vesicle-fusing ATPase [Metallosphaera sedula DSM 5348] gi|145701505|gb|ABP94647.1| Vesicle-fusing ATPase [Metallosphaera sedula DSM 5348] Length = 703 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 8/71 (11%) Query: 26 TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77 T E+ G + LK +E + RAE V+ GPPG GKT LA+ VA E Sbjct: 431 TWEDIIGLDQVKQELKEVVEWPLKYSKLYEEMRAEVPSGVMLYGPPGTGKTMLAKAVAHE 490 Query: 78 LGVNFRSTSGP 88 G NF + SGP Sbjct: 491 SGANFIAVSGP 501 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 19/123 (15%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPP 63 + Q +I L+ +LE+ G + +LK I+ A + E VL GPP Sbjct: 160 IKQTQKNIPLV---SLEDVGGLTDQIMSLKEIIDIALVKPEVPRLFGFRPPKGVLLYGPP 216 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIH 115 G GKT +A+ +A + NF SGP I G+ L + ++ ++FIDEI Sbjct: 217 GTGKTLIAKALANSVMANFFFISGPEIGSKYYGESEKRLREIFEQAEKSAPSMIFIDEID 276 Query: 116 RLS 118 ++ Sbjct: 277 AIA 279 >gi|91094825|ref|XP_971125.1| PREDICTED: similar to werner helicase interacting protein [Tribolium castaneum] Length = 494 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 107/256 (41%), Gaps = 47/256 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 L+P+ L++F GQ L+ +E + +++ GPPG GKT+L+ V+ Sbjct: 98 LQPKCLDDFMGQSHVLGENTVLRTLLEKGD-----IPNMVLWGPPGCGKTSLSGVIQ--- 149 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSIIVE 122 G+ S P K L A ++D R VLF+DEIHR + + Sbjct: 150 GI---CKSNPTKLKFVSLCAATAGVKDVQNIVSAAKLQQKFGCRTVLFMDEIHRFNKKQQ 206 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +I +E + ++VG S +N LSR +I + +R Sbjct: 207 DIFLLHVEKGDI-ILVGATTENPSFTVNSALLSRCRVIVLQKLDPDCLYQILERGA---- 261 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRL---LRRVRDFAEV 235 + +E +V +GA+ G AV +A +A S G RIA G L L+ D +V Sbjct: 262 -RNFNVE----VVDKGARSKGFAVQADALKWLADISDGDARIALGNLQLVLQYNEDKNKV 316 Query: 236 AHAKTITREIADAALL 251 + I +I + LL Sbjct: 317 VTIEDIKEKIKKSHLL 332 >gi|327459576|gb|EGF05922.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1] gi|332364872|gb|EGJ42641.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1059] Length = 422 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|87126144|gb|ABD20658.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus USA300_FPR3757] Length = 391 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLF 110 + L ++F GPPG+GKT++A+ ++ FR + K L + + +L Sbjct: 5 KKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILL 64 Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 +DEIHRL ++ L P +E+ ++ +++G S IN Sbjct: 65 LDEIHRLDKAKQDFLLPHLENGKI-VLIGATTSNPYHAIN 103 >gi|284035353|ref|YP_003385283.1| ATPase AAA [Spirosoma linguale DSM 74] gi|283814646|gb|ADB36484.1| AAA ATPase central domain protein [Spirosoma linguale DSM 74] Length = 423 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 33/149 (22%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL + GQ + L+ ++A + L ++ GPPG+GKTTLA ++A Sbjct: 12 VRPQTLNDVIGQRKLIGPTGALRRAVDAGR-----LPSMILWGPPGVGKTTLALLLA--- 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-RDVL-----------FIDEIHRLSIIVEEILY 126 + P IA L+A+ + +++ RDVL FIDEIHR + ++ L Sbjct: 64 ----EAVKRPFIA----LSAINSGVKEIRDVLSRPSGMFPPVVFIDEIHRFNKSQQDALL 115 Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSR 153 A+E Q+ L+ E PS LSR Sbjct: 116 GAVEKGQITLIGATTENPSFEVNSALLSR 144 >gi|258411000|ref|ZP_05681280.1| recombination protein MgsA [Staphylococcus aureus A9763] gi|257840150|gb|EEV64614.1| recombination protein MgsA [Staphylococcus aureus A9763] Length = 391 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLF 110 + L ++F GPPG+GKT++A+ ++ FR + K L + + +L Sbjct: 5 KKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILL 64 Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 +DEIHRL ++ L P +E+ ++ +++G S IN Sbjct: 65 LDEIHRLDKAKQDFLLPHLENGKI-VLIGATTSNPYHAIN 103 >gi|255711710|ref|XP_002552138.1| KLTH0B08052p [Lachancea thermotolerans] gi|238933516|emb|CAR21700.1| KLTH0B08052p [Lachancea thermotolerans] Length = 536 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 29/161 (18%) Query: 22 LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 LRP+ L E+ GQ S+ L F++ + ++ GPPG+GKT+LA+++ + Sbjct: 98 LRPKELAEYVGQQHIISSEHGVLYKFVQQG-----IIPSMILWGPPGVGKTSLARLLTK- 151 Query: 78 LGVNFRSTSGPVI---------AKAGDLAALLTN------LEDR-DVLFIDEIHRLSIIV 121 VN +G A A +L + N L R V+FIDEIHR + Sbjct: 152 -AVNQSHANGVTYTLIQTSATKATAQELRKIFENSRREFSLTKRITVVFIDEIHRFNKGQ 210 Query: 122 EEILYPAME--DFQLDLMVGEGPSARSVKINLSRFTLIAAT 160 +++L P +E D L E PS + +SR + T Sbjct: 211 QDLLLPHVEAGDIVLIGATTENPSFQLNNALMSRCQIFVLT 251 >gi|157151477|ref|YP_001451097.1| recombination factor protein RarA [Streptococcus gordonii str. Challis substr. CH1] gi|157076271|gb|ABV10954.1| ATPase, AAA family [Streptococcus gordonii str. Challis substr. CH1] Length = 422 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTGIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|115476404|ref|NP_001061798.1| Os08g0413000 [Oryza sativa Japonica Group] gi|37806195|dbj|BAC99698.1| putative cell division cycle protein [Oryza sativa Japonica Group] gi|113623767|dbj|BAF23712.1| Os08g0413000 [Oryza sativa Japonica Group] gi|125603399|gb|EAZ42724.1| hypothetical protein OsJ_27296 [Oryza sativa Japonica Group] Length = 848 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT +A+ +A+E NF S GP + G+ + NL D+ + Sbjct: 526 VLFYGPPGCGKTMMAKAIAKECKANFISIKGPELLTMWFGESEGNVRNLFDKARQSAPCI 585 Query: 109 LFIDEIHRLSI 119 LF DE+ +++ Sbjct: 586 LFFDELDSIAV 596 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ +A E G +F +GP I Sbjct: 252 ILLYGPPGTGKTLLARAIAAESGAHFVVVNGPEI 285 >gi|324994350|gb|EGC26264.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK678] gi|327490776|gb|EGF22557.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1058] gi|332358558|gb|EGJ36382.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1056] Length = 422 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15] gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus Y.G.57.14] gi|284997767|ref|YP_003419534.1| Replication factor C [Sulfolobus islandicus L.D.8.5] gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15] gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14] gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5] Length = 330 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPRTL++ Q E LK F+ + + + H+LF GPPG GKTT A + +L G N Sbjct: 15 RPRTLDDIVNQREIIDRLKKFV-----KEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69 Query: 82 F 82 + Sbjct: 70 Y 70 >gi|47226685|emb|CAG07844.1| unnamed protein product [Tetraodon nigroviridis] Length = 797 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 77/196 (39%), Gaps = 46/196 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----------------VIAKAGDLAA-- 98 VLF GPPG GKT LA+ +A E NF S GP + KA L + Sbjct: 508 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARMLESEE 567 Query: 99 -----------LLTNLE----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143 +LT ++ ++V I +R II IL P D L+ P Sbjct: 568 LAQWWQVFAQQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLD---QLIYIPLPD 624 Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203 + SR +++ A R ++ + F + N + DL I QR K LA+ Sbjct: 625 EK------SRISILKANLRKSPISQDVDLDF-LAKMTNGFSGADLTEICQRACK---LAI 674 Query: 204 TDEAACEIAMRSRGTP 219 + EI R RG P Sbjct: 675 RESIESEIRRRGRGRP 690 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 235 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 268 >gi|327472989|gb|EGF18416.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK408] Length = 422 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|325689545|gb|EGD31550.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK115] Length = 422 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +++ GQ K+ +A L ++ GPPG+GKT++A +A Sbjct: 9 MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 FR+ + V +K + A L VL +DEIHRL ++ L P +E L + Sbjct: 67 FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121 Query: 137 MVG 139 M+G Sbjct: 122 MIG 124 >gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25] gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27] gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4] gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25] gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27] gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4] gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A] gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4] Length = 330 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPRTL++ Q E LK F+ + + + H+LF GPPG GKTT A + +L G N Sbjct: 15 RPRTLDDIVNQREIIDRLKKFV-----KEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69 Query: 82 F 82 + Sbjct: 70 Y 70 >gi|198283129|ref|YP_002219450.1| ATP-dependent protease La [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666950|ref|YP_002425356.1| ATP-dependent protease La [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247650|gb|ACH83243.1| ATP-dependent protease La [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519163|gb|ACK79749.1| ATP-dependent protease La [Acidithiobacillus ferrooxidans ATCC 23270] Length = 788 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 33/163 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L Q +AR +G F R + G V +A G++ L Sbjct: 362 LCFVGPPGVGKTSLGQSIARAMGRKFVRVSLGGVHDEAEIRGHRRTYIGALPGNILQALG 421 Query: 102 NLEDRD-VLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 +E R+ V+ +DEI +L + + E+L P D + ++ +L Sbjct: 422 KVEVRNPVMLLDEIDKLGAGGFHGDPAAALLEVLDPEQNRTFRDTYL-------AMPFDL 474 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 S IA + + PL+DR I I L+ Y ED I R Sbjct: 475 SHVFFIATANILDTIPGPLRDRMEI-ITLSGYTEEDKMHIASR 516 >gi|218201158|gb|EEC83585.1| hypothetical protein OsI_29256 [Oryza sativa Indica Group] Length = 837 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT +A+ +A+E NF S GP + G+ + NL D+ + Sbjct: 509 VLFYGPPGCGKTMMAKAIAKECKANFISIKGPELLTMWFGESEGNVRNLFDKARQSAPCI 568 Query: 109 LFIDEIHRLSI 119 LF DE+ +++ Sbjct: 569 LFFDELDSIAV 579 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ +A E G +F +GP I Sbjct: 252 ILLYGPPGTGKTLLARAIAAESGAHFVVVNGPEI 285 >gi|159041543|ref|YP_001540795.1| AAA family ATPase, CDC48 subfamily protein [Caldivirga maquilingensis IC-167] gi|157920378|gb|ABW01805.1| AAA family ATPase, CDC48 subfamily [Caldivirga maquilingensis IC-167] Length = 852 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 17/118 (14%) Query: 24 PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR E G +E A ++ +E E H VL +GPPG GKT LA+ V Sbjct: 175 PRVTWEDIGDLEEAKQKIRELVELPLKHPELFRHLGIEPPKGVLLIGPPGTGKTLLAKAV 234 Query: 75 ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 A E F S +GP I G+ A L + D ++FIDEI ++ EE+ Sbjct: 235 ANEADAYFVSINGPEIVSKYYGESEARLREIFDEAKRNAPAIIFIDEIDSIAPKREEV 292 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 511 ILLFGPPGTGKTLLAKAVANESGANFIAVRGPEI 544 >gi|303244607|ref|ZP_07330940.1| AAA ATPase central domain protein [Methanothermococcus okinawensis IH1] gi|302485033|gb|EFL47964.1| AAA ATPase central domain protein [Methanothermococcus okinawensis IH1] Length = 514 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP+T+ E G + LK +IE + + + VL VGPPG GKTTLA +A + G Sbjct: 8 RPKTMAEVVGNTKIKEELKKWIEDY-LQGKPVKPVLLVGPPGCGKTTLANALANDYG 63 >gi|50306785|ref|XP_453368.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642502|emb|CAH00464.1| KLLA0D06897p [Kluyveromyces lactis] Length = 835 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 6 GLLSRNVSQEDADISLLR--PRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGP 62 L S++ ED+ + + P L + G A LK ++E+ + + ++ V+ GP Sbjct: 278 NLSSKSTVTEDSKLWTTKYAPTDLRQLCGNKGAIQKLKTWLESWSSGKKPSMRAVMLSGP 337 Query: 63 PGLGKTTLAQVVARELGVN 81 PG+GKTT A +VA+ LG + Sbjct: 338 PGIGKTTAAHLVAKSLGYD 356 >gi|325971760|ref|YP_004247951.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy] gi|324026998|gb|ADY13757.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy] Length = 655 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEA-------CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQVEA S LK K A+ VL VGPPG GKT LA+ VA E Sbjct: 192 TFKDVAGQVEAKYELEEVVSFLKHPDHFTKVGAKIPRGVLLVGPPGTGKTLLAKAVAGES 251 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV+F TSG + G AA + +L ++ +LFIDE+ Sbjct: 252 GVSFFHTSGSDFVEMFVGMGAARVRDLFEQARKHAPCILFIDEL 295 >gi|149196409|ref|ZP_01873464.1| ATPase, AAA family protein [Lentisphaera araneosa HTCC2155] gi|149140670|gb|EDM29068.1| ATPase, AAA family protein [Lentisphaera araneosa HTCC2155] Length = 430 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 18/121 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +F GQ S L+ IE + ++F GPPG GKT+LA ++++ Sbjct: 16 LRPEGFGDFFGQGHLTAEGSLLRRSIEN-----DCFSSIIFTGPPGTGKTSLASIISKHT 70 Query: 79 GVNFRSTSG--------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 +F + S KA D A + + VLF+DEIHR + ++ L +E Sbjct: 71 EADFIALSAIDSSVSEVRKAVKAADEARKFSGR--KTVLFVDEIHRFNKAQQDSLLKDIE 128 Query: 131 D 131 + Sbjct: 129 N 129 >gi|302901862|ref|XP_003048527.1| hypothetical protein NECHADRAFT_95752 [Nectria haematococca mpVI 77-13-4] gi|256729460|gb|EEU42814.1| hypothetical protein NECHADRAFT_95752 [Nectria haematococca mpVI 77-13-4] Length = 547 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 26/157 (16%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RPRTL++ GQ N L+ IE+++ + ++ G G GKTT+A+ +A+ +G Sbjct: 139 MRPRTLDDVFGQDLVGPNGVLRSLIESSQ-----VPSMILWGASGTGKTTIARCIAQMVG 193 Query: 80 -----VNFRSTSGPVIAK-----AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 +N ST + K A DLA LT + ++F DEIHR + +++ + Sbjct: 194 SRFIELNATSTGVAEVKKLFQEAANDLA--LTGR--KTIIFCDEIHRFNKAQQDVFLKPV 249 Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATT 161 E + L+ E PS + LSR FTL TT Sbjct: 250 EAGTVTLIGATTENPSFKVAAALLSRCRTFTLQTLTT 286 >gi|256810701|ref|YP_003128070.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens AG86] gi|256793901|gb|ACV24570.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens AG86] Length = 903 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ IE E + VL VGPPG GKT LA+ VA E Sbjct: 177 TYEDIGGLKEEVRKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236 Query: 78 LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLS 118 G NF +GP I +L + E+ ++FIDEI ++ Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIA 285 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/34 (61%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E G NF S GP I Sbjct: 489 VLLFGPPGTGKTLLAKAVANESGANFISVKGPEI 522 >gi|163790370|ref|ZP_02184802.1| ATPase, AAA family protein [Carnobacterium sp. AT7] gi|159874441|gb|EDP68513.1| ATPase, AAA family protein [Carnobacterium sp. AT7] Length = 428 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 6/131 (4%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP ++ GQ K+ +A+ L ++ GPPG+GKT++A +A Sbjct: 9 MRPTHIDNIVGQQHLVGKGKIIRRMVEAKM--LSSMILYGPPGIGKTSIASAIAGTTKFA 66 Query: 82 FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 FR + K DL ++ + +L +DE+HRL ++ L P +E+ ++ +++G Sbjct: 67 FRVLNAASDTKK-DLQIVVEEAKMSGTVILLLDEVHRLDKPKQDFLLPHLENGRI-ILIG 124 Query: 140 EGPSARSVKIN 150 + IN Sbjct: 125 ATTENPYITIN 135 >gi|270006572|gb|EFA03020.1| hypothetical protein TcasGA2_TC010443 [Tribolium castaneum] Length = 478 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 107/256 (41%), Gaps = 47/256 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 L+P+ L++F GQ L+ +E + +++ GPPG GKT+L+ V+ Sbjct: 98 LQPKCLDDFMGQSHVLGENTVLRTLLEKGD-----IPNMVLWGPPGCGKTSLSGVIQ--- 149 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSIIVE 122 G+ S P K L A ++D R VLF+DEIHR + + Sbjct: 150 GI---CKSNPTKLKFVSLCAATAGVKDVQNIVSAAKLQQKFGCRTVLFMDEIHRFNKKQQ 206 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 +I +E + ++VG S +N LSR +I + +R Sbjct: 207 DIFLLHVEKGDI-ILVGATTENPSFTVNSALLSRCRVIVLQKLDPDCLYQILERGA---- 261 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRL---LRRVRDFAEV 235 + +E +V +GA+ G AV +A +A S G RIA G L L+ D +V Sbjct: 262 -RNFNVE----VVDKGARSKGFAVQADALKWLADISDGDARIALGNLQLVLQYNEDKNKV 316 Query: 236 AHAKTITREIADAALL 251 + I +I + LL Sbjct: 317 VTIEDIKEKIKKSHLL 332 >gi|298290429|ref|YP_003692368.1| ATP-dependent protease La [Starkeya novella DSM 506] gi|296926940|gb|ADH87749.1| ATP-dependent protease La [Starkeya novella DSM 506] Length = 813 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 78/185 (42%), Gaps = 42/185 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + F GPPG+GKT+L Q +AR +G F R + G V +A G++ + Sbjct: 377 LCFAGPPGVGKTSLGQSIARAMGRKFVRVSLGGVHDEAEIRGHRRTYVGALPGNIIQGIR 436 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 RD V+ +DEI ++ S + E+L P D +G V +LS Sbjct: 437 KAGTRDCVMMLDEIDKMGSGIQGDPSAAMLEVLDPEQNGTFRDNYLG-------VPFDLS 489 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202 R IA + + PL+DR I I+L Y + I +R G K + Sbjct: 490 RVVFIATANMLDTIPGPLRDRMEI-IQLTGYTDTEKLQIAKRYLVRRQLEANGVKPEQVE 548 Query: 203 VTDEA 207 V DEA Sbjct: 549 VDDEA 553 >gi|323704705|ref|ZP_08116283.1| PTS system transcriptional activator [Thermoanaerobacterium xylanolyticum LX-11] gi|323536167|gb|EGB25940.1| PTS system transcriptional activator [Thermoanaerobacterium xylanolyticum LX-11] Length = 884 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 35/134 (26%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVN---FRSTSGPVIAKAGDLAA----LLTNL----- 103 H L +GP G+GK+T A+++ + GV F+S S V+ D A L++ L Sbjct: 170 HTLIIGPTGVGKSTFAEMMYK-FGVEAKVFKSNSPFVVFNCADYAQNPQLLMSQLFGHIK 228 Query: 104 --------------EDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 E+ D +LF+DEIHR+ +E+L+ +++ + + GE + RSV Sbjct: 229 GAFTGADKEKRGLIEEADGGILFLDEIHRMPPEGQEMLFTLIDNGKYRRL-GETENVRSV 287 Query: 148 KINLSRFTLIAATT 161 K+ +IAATT Sbjct: 288 KV-----LIIAATT 296 >gi|94985892|ref|YP_605256.1| ATPase [Deinococcus geothermalis DSM 11300] gi|94556173|gb|ABF46087.1| ATPase associated with various cellular activities, AAA_3 [Deinococcus geothermalis DSM 11300] Length = 317 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 30/169 (17%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------- 105 H+L PG+GKTTLA +AR LG++FR DL L ++ D Sbjct: 49 HLLIEDQPGVGKTTLAHALARTLGLSFRRVQFTSDLLPADLLGL--SIWDAGSATFRHHP 106 Query: 106 ----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161 +VL DEI+R + + L AME+ Q V EG R + + F +IA Sbjct: 107 GPIFSEVLLADEINRAAPKTQSALLEAMEERQ----VSEGGVTRPLP---NPFFVIATQN 159 Query: 162 RVGLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205 + T+PL DRF + + L + + +T+++ G + G AV D Sbjct: 160 PTAFVGTSPLPEAQLDRFLLTVTLGYPDPRAERTLLETGGR--GEAVRD 206 >gi|269126366|ref|YP_003299736.1| AAA ATPase central domain-containing protein [Thermomonospora curvata DSM 43183] gi|268311324|gb|ACY97698.1| AAA ATPase central domain protein [Thermomonospora curvata DSM 43183] Length = 463 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 8/116 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA---REL 78 +RPR L+E GQ E I R + VL+ GPPG GKTTLA VVA R Sbjct: 38 MRPRGLDEVIGQ-EHLLGPGTPIRQLVDRDAPMSLVLW-GPPGTGKTTLAYVVAGVTRRR 95 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMED 131 V + S V ++ L + VLF+DE+HR + ++ L PA+E+ Sbjct: 96 FVEISAVSDGVKKVRAEIETARRELGMTGRQTVLFVDEVHRFNKAQQDALLPAVEN 151 >gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica] gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica] Length = 329 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP L++ E S +K FI+ E L H+LF GPPG GKT+ VA+EL Sbjct: 15 RPNKLDDLISHTEIISTIKKFIDN-----EQLPHLLFYGPPGTGKTSTILAVAKEL 65 >gi|312083246|ref|XP_003143781.1| hypothetical protein LOAG_08200 [Loa loa] gi|307761057|gb|EFO20291.1| hypothetical protein LOAG_08200 [Loa loa] Length = 294 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 54/115 (46%), Gaps = 23/115 (20%) Query: 26 TLEEFTGQVEACSNLKVFIEA-----------AKARAEALDHVLFVGPPGLGKTTLAQVV 74 T+++ GQ+EA K +EA A + VL GPPG GKT LAQ V Sbjct: 69 TIDDIVGQIEA---KKALMEAVVDPVLYPEWFATSGHNPWRCVLLYGPPGTGKTRLAQSV 125 Query: 75 ARELGVNF-RSTSGPVIAK-AGDLAALLTNLEDR-------DVLFIDEIHRLSII 120 ARE+ F + TS +I+ +G L+ L D V+FIDEI L I Sbjct: 126 AREMNTRFYQVTSSDLISTWSGQSEKLIRELFDHALAHNGSSVIFIDEIDSLCRI 180 >gi|228470546|ref|ZP_04055403.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas uenonis 60-3] gi|228307673|gb|EEK16649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas uenonis 60-3] Length = 439 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103 A ++L VGP G GKT LAQ +AR L V F V+ +AG D+ ++++ L Sbjct: 137 AKSNILMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLLQNCD 196 Query: 104 -----EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 197 YDVAAAERGIVFIDEIDKIA 216 >gi|195125639|ref|XP_002007285.1| GI12852 [Drosophila mojavensis] gi|193918894|gb|EDW17761.1| GI12852 [Drosophila mojavensis] Length = 307 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 24/37 (64%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 EA VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 57 EAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGP 93 >gi|158320208|ref|YP_001512715.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs] gi|158140407|gb|ABW18719.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs] Length = 587 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 26/133 (19%) Query: 8 LSRNVSQE---------DADISLLRPRTLE--EFTGQVEACSNLKVFIEAAKARAEALDH 56 LS+N SQ+ + DIS + T+ G EA N+ ++ K + + Sbjct: 123 LSKNNSQQVSKEYDKMSNMDISTEKDSTIRFCNIAGNDEAKENIMELVDFIKNPQKYEKY 182 Query: 57 -------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNL 103 ++ GPPG GKT +A+ +A E GV+F + SG + AG + +L N Sbjct: 183 GARMPKGIILYGPPGTGKTLMAKALASEAGVDFLAVSGSDFVQVYAGLGAGRIRSLFKNA 242 Query: 104 EDRD--VLFIDEI 114 +++ V+FIDEI Sbjct: 243 KEKGKCVVFIDEI 255 >gi|67478402|ref|XP_654601.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS] gi|56471662|gb|EAL49214.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS] Length = 912 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 32/183 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108 +LF GPPG GKT LA+ VA+E NF S +A L +L + V Sbjct: 628 ILFFGPPGTGKTMLAKAVAKESKANFINASLSSLESKWFGEAEKFVKALFSLAAKLSPCV 687 Query: 109 LFIDEI-----HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 +FIDE+ R S E L +F + + +G ++ NL + ++ AT R Sbjct: 688 IFIDEVDALLGKRTSQNENETLRKMKNEF---MTLWDGLKSQ----NLEQIIVLGATNRP 740 Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMRSRGTPR 220 L + + RF I ++ ED + I++ +G K+ C+I+ + TP Sbjct: 741 FDLDDAILRRFSRRILVDLPTKEDRENILKIILKGEKID---------CDISKIAEKTPG 791 Query: 221 IAG 223 +G Sbjct: 792 YSG 794 >gi|302390612|ref|YP_003826433.1| membrane protease FtsH catalytic subunit [Thermosediminibacter oceani DSM 16646] gi|302201240|gb|ADL08810.1| membrane protease FtsH catalytic subunit [Thermosediminibacter oceani DSM 16646] Length = 599 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/95 (42%), Positives = 48/95 (50%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE + K FIE A VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 167 EELQEVVEFLKHPKKFIEMG---ARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L D+ ++FIDEI Sbjct: 224 SDFVEMFVGVGAARVRDLFDQAKKNAPCIVFIDEI 258 >gi|313201003|ref|YP_004039661.1| aaa atpase central domain-containing protein [Methylovorus sp. MP688] gi|312440319|gb|ADQ84425.1| AAA ATPase central domain protein [Methylovorus sp. MP688] Length = 440 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ L++ ++ K L ++ GPPG+GKTTLA+++A Sbjct: 18 LRPATLDDVVGQKHLLGEGKPLRLAFQSGK-----LPSMILWGPPGVGKTTLARLIANTA 72 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F S V++ D+ + + R +LF+DE+HR + ++ P +E Sbjct: 73 DAEFIPLSA-VLSGIKDIREAVERAQHTLQQSGRRTILFVDEVHRFNKGQQDAFLPFVE 130 >gi|303244483|ref|ZP_07330818.1| AAA family ATPase, CDC48 subfamily [Methanothermococcus okinawensis IH1] gi|302485181|gb|EFL48110.1| AAA family ATPase, CDC48 subfamily [Methanothermococcus okinawensis IH1] Length = 746 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 + E+ G E ++ +E E D VL GPPG GKT LA+ VA E Sbjct: 191 SYEDIGGLREEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 250 Query: 78 LGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDVLFIDEIHRLS 118 G NF + +GP I G+ L + E ++FIDEI ++ Sbjct: 251 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEEESPSIVFIDEIDAIA 299 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E NF S GP I Sbjct: 503 VLLFGPPGTGKTLLAKAVANESQANFISVKGPEI 536 >gi|239827838|ref|YP_002950462.1| recombination factor protein RarA [Geobacillus sp. WCH70] gi|239808131|gb|ACS25196.1| AAA ATPase central domain protein [Geobacillus sp. WCH70] Length = 430 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--- 78 +RPR ++E GQ + K + +L G PG+GKT+LA +A + Sbjct: 12 MRPRNIDEIVGQQHIIGPHTALYKMIKNGY--VPSLLLYGEPGVGKTSLAHAIAGTVQRD 69 Query: 79 --GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 VN ++ + + + A L N+ +LFIDEIHR + ++ L P +E Sbjct: 70 FFAVNATTSGKKELEEVVETAKLTGNV----ILFIDEIHRFNKAQQDYLLPHIE 119 >gi|257093851|ref|YP_003167492.1| ATP-dependent protease La [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046375|gb|ACV35563.1| ATP-dependent protease La [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 806 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 50/253 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+L Q +AR G F R + G V +A G + ++ Sbjct: 354 LCLVGPPGVGKTSLGQSIARATGRKFVRMSLGGVRDEAEIRGHRRTYIGSMPGKILQNMS 413 Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + ++ LF +DE+ ++ S + E+L P +D V V+ +LS Sbjct: 414 KIGVKNPLFLLDEVDKMGQDFRGDPSSALLEVLDPEQNSTFVDHYV-------EVEYDLS 466 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----GAKLTGLAVTDEA 207 +A + + PL DR + IRL+ Y ++ I QR K GL T+ Sbjct: 467 EIMFVATANTLN-IPAPLLDRMEV-IRLSGYTEDEKVNIAQRYLLPKQMKNNGLRTTELT 524 Query: 208 ACEIAMRS--RGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264 E A+R R R AG R L RD ++ I R++ LLR + K+ + Sbjct: 525 VAESALRDIVRYYTREAGVRSLE--RDISK------ICRKVVKTLLLRKSQTKVAVSARN 576 Query: 265 L-RYLTMIARNFG 276 L ++L + NFG Sbjct: 577 LDKFLGVRRYNFG 589 >gi|82703216|ref|YP_412782.1| ATP-dependent protease La [Nitrosospira multiformis ATCC 25196] gi|82411281|gb|ABB75390.1| ATP-dependent protease La [Nitrosospira multiformis ATCC 25196] Length = 790 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 40/188 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L Q +AR L F R + G V +A G++ L Sbjct: 357 LCFVGPPGVGKTSLGQSIARALQRPFVRVSLGGVHDEAEMRGHRRTYIGAMPGNIVQSLR 416 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R+ V+ +DE+ ++S + E+L P D +G V +LS Sbjct: 417 KAGARNCVMMLDEVDKMSASLHGDPSAALLEVLDPEQNSTFRDNYLG-------VPFDLS 469 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-----RGAKLTGLAVTDEA 207 R IA + + P++DR I I L Y E+ I Q R ++ GL+ E Sbjct: 470 RVVFIATANVIDNVPPPVRDRMEI-IDLPGYTREEKLQIAQRYLVGRQREVNGLS---ED 525 Query: 208 ACEIAMRS 215 CEI++ + Sbjct: 526 QCEISVEA 533 >gi|269213974|ref|ZP_06158287.1| replication-associated recombination protein A [Neisseria cinerea ATCC 14685] gi|269144864|gb|EEZ71282.1| replication-associated recombination protein A [Neisseria cinerea ATCC 14685] Length = 387 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFI 111 +L GPPG+GKTTLA+++A+ F S I +A D A + +LF+ Sbjct: 1 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFV 60 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR 153 DE+HR + ++ P +E L + E PS LSR Sbjct: 61 DEVHRFNKAQQDAFLPHVESGLLTFIGATTENPSFEVNPALLSR 104 >gi|154151138|ref|YP_001404756.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Methanoregula boonei 6A8] gi|153999690|gb|ABS56113.1| AAA family ATPase, CDC48 subfamily [Methanoregula boonei 6A8] Length = 801 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 16/85 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDL-AALLTNLEDRD-----V 108 VLF GPPG GKT +A+ VA E+ +F + SGP I GD AL D + + Sbjct: 219 VLFYGPPGTGKTLIAKAVANEVDAHFSTLSGPEIMSKFYGDSEKALRDKFHDAEENAPSI 278 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ 133 +FIDEI ++ P ED Q Sbjct: 279 IFIDEIDAIA--------PKREDVQ 295 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%) Query: 52 EALDH-----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 E LD+ +L GPPG GKT LA+ +A + +NF S GP + G Sbjct: 481 EKLDYKPPRGILLFGPPGTGKTLLAKGIASKRQLNFISVKGPELLSKG 528 >gi|330833937|ref|YP_004408665.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina Ar-4] gi|329566076|gb|AEB94181.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina Ar-4] Length = 753 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 17/131 (12%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDH--------VLFVG 61 + +E + + PR E G ++ L+ IE E H VL G Sbjct: 159 TIKEEPVREAQVYPRVTWEDIGDLDDVKEKLREMIELPMKHPELFQHLGIEPPKGVLLYG 218 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----VLFIDE 113 PPG+GKT LA+ +A E+G F S +GP I G+ L + +D D ++FIDE Sbjct: 219 PPGVGKTLLARALANEIGAYFVSINGPEIMSKFYGESEQRLREIFDDADKNAPSIIFIDE 278 Query: 114 IHRLSIIVEEI 124 I ++ EE+ Sbjct: 279 IDAIAPSREEV 289 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 12/114 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E G NF + GP V++K G+ + + R V Sbjct: 491 VLLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESEKAIREIFKRARQTAPTV 550 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 +F DEI ++ + + + MV + S + LS+ +IAAT R Sbjct: 551 IFFDEIDSIA----PMRGMGYDSGVTERMVNQLLSEMDGIVPLSKVVVIAATNR 600 >gi|260909906|ref|ZP_05916594.1| ATP-dependent Clp protease subunit [Prevotella sp. oral taxon 472 str. F0295] gi|260635951|gb|EEX53953.1| ATP-dependent Clp protease subunit [Prevotella sp. oral taxon 472 str. F0295] Length = 753 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 24/171 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARE 77 L R E+ GQ +A + I+ AKA + L +LFVGP G+GKT +A+V+A E Sbjct: 448 LEKRMKEQIYGQNQAVELVTQAIQTAKAGLTEEGKPLSAMLFVGPTGVGKTEVARVLAHE 507 Query: 78 LGVNF------RSTSGPVIAKAGDLAALLTNLED------------RDVLFIDEIHRLSI 119 LG+ T +AK A ED VL +DEI + Sbjct: 508 LGIELVRFDMSEYTEKHAVAKLIGSPAGYVGYEDGGLLTDAIRKIPNCVLLLDEIEKAHA 567 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF--TLIAATTRVGLLTN 168 + IL M+ +L G+ R+V + ++ A+ VG +N Sbjct: 568 DIYNILLQVMDYARLTDNKGQKADFRNVVLIMTSNAGAQFASQANVGFASN 618 >gi|282165485|ref|YP_003357870.1| cell division control protein 48 [Methanocella paludicola SANAE] gi|282157799|dbj|BAI62887.1| cell division control protein 48 [Methanocella paludicola SANAE] Length = 765 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108 VL GPPG GKT +A+ VA E NF S SGP I L + ED + Sbjct: 218 VLLYGPPGTGKTMIAKAVASETDANFISISGPEIMSKYYGESEKQLRDIFKEAEDNAPSI 277 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 278 IFIDEIDSIAPRREEV 293 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E NF S GP + Sbjct: 490 ILVFGPPGTGKTLLAKAVANESEANFISIKGPEV 523 >gi|219120710|ref|XP_002181088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407804|gb|EEC47740.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 930 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E G NF S GP Sbjct: 645 VLFYGPPGCGKTLLAKAIANECGANFISIKGP 676 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 33/157 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL--------TNLEDR 106 VL GP G GKT +A+ VA E G F +GP VI+K AG+ L N +D Sbjct: 368 VLLTGPSGSGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFEDAEANADDY 427 Query: 107 D--VLFIDEIHRLSIIVE----EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160 + ++FIDEI ++ E E+ + L LM G P+ S+ ++AAT Sbjct: 428 NGAIIFIDEIDSIAPKREKAGGEVEKRVVSQL-LTLMDGLKPT--------SKVVVMAAT 478 Query: 161 TRVGLLTNPLQ-----DR---FGIPIRLNFYEIEDLK 189 R G++ L+ DR GIP EI +K Sbjct: 479 NRPGVIEPALRRPGRFDRELDMGIPDEQGRLEILQIK 515 >gi|253998904|ref|YP_003050967.1| recombination factor protein RarA [Methylovorus sp. SIP3-4] gi|253985583|gb|ACT50440.1| AAA ATPase central domain protein [Methylovorus sp. SIP3-4] Length = 440 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ L++ ++ K L ++ GPPG+GKTTLA+++A Sbjct: 18 LRPATLDDVVGQKHLLGEGKPLRLAFQSGK-----LPSMILWGPPGVGKTTLARLIANTA 72 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130 F S V++ D+ + + R +LF+DE+HR + ++ P +E Sbjct: 73 DAEFIPLSA-VLSGIKDIREAVERAQHTLQQSGRRTILFVDEVHRFNKGQQDAFLPFVE 130 >gi|229581753|ref|YP_002840152.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.N.15.51] gi|228012469|gb|ACP48230.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.N.15.51] Length = 759 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 17/136 (12%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDH-------- 56 G S + QE + + P+ E G +E ++ +E E H Sbjct: 168 GRTSLEIRQEPVKETAVVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKG 227 Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG+GKT LA+ +A E+G F S +GP I G+ L + + + Sbjct: 228 VLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNAPAI 287 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 288 IFIDEIDAIAPKREEV 303 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 503 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 536 >gi|291557549|emb|CBL34666.1| Recombination protein MgsA [Eubacterium siraeum V10Sc8a] Length = 416 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 10/143 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+E GQ + K +R + + +++F GP G+GKTT+A ++A++ ++ Sbjct: 7 IRPSTLDEVVGQRHILAQGKPLYNII-SRGK-IPNMIFYGPSGVGKTTVANIIAQKTSMS 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 +G A D+ ++ NL +LF+DEI L+ ++ L +E ++ L Sbjct: 65 LYRLNG-TQASTSDIKDVVANLGTFGAAGGILLFLDEIQYLNKKQQQTLLEYIESGEITL 123 Query: 137 MVG--EGPSARSVKINLSRFTLI 157 + E P LSR T+ Sbjct: 124 IASTTENPYFYVYSAVLSRCTVF 146 >gi|51598717|ref|YP_072905.1| DNA polymerase III subunits gamma and tau [Borrelia garinii PBi] gi|51573288|gb|AAU07313.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii PBi] Length = 560 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 25/227 (11%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K + +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKIA----NAYIFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --KNGPTVMPCGECNNCKSIENDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ + I ATT L ++ R +E Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 + ++++ + DEA IA +S G+ R A L +V F Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFT 229 >gi|15896947|ref|NP_350296.1| Lon-like ATP-dependent protease [Clostridium acetobutylicum ATCC 824] gi|15026822|gb|AAK81636.1|AE007867_3 Lon-like ATP-dependent protease [Clostridium acetobutylicum ATCC 824] gi|325511124|gb|ADZ22760.1| Lon-like ATP-dependent protease [Clostridium acetobutylicum EA 2018] Length = 634 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 46/157 (29%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL- 78 SLLRP+T E GQ A L +K + H++ GPPG+GKTT A++ E+ Sbjct: 165 SLLRPQTFSEIVGQERAIKAL-----VSKLASPYPQHIILYGPPGVGKTTAARIALEEVK 219 Query: 79 ---------GVNF------------RSTSGPVIAKAGD------------------LAAL 99 NF R + P++ D + L Sbjct: 220 KLKYTPFKKDANFVEVDGATLRWDPREITNPLLGSVHDPIYQGSKRDLAETGVPEPKSGL 279 Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 +T+ VLFIDEI L ++++ L +ED +++ Sbjct: 280 VTDAHG-GVLFIDEIGELDVMLQNKLLKVLEDKKVEF 315 >gi|220933163|ref|YP_002510071.1| Sporulation protease LonC [Halothermothrix orenii H 168] gi|219994473|gb|ACL71076.1| Sporulation protease LonC [Halothermothrix orenii H 168] Length = 639 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 89/238 (37%), Gaps = 56/238 (23%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77 I L+RP++L+E GQ A L +K + HV+ GPPG+GKTT A++ E Sbjct: 161 IDLVRPKSLDEIVGQQRALKAL-----VSKIASPYPQHVILYGPPGVGKTTAARLALEEA 215 Query: 78 ---------------------LGVNFRSTSGPVIAKAGD------------------LAA 98 L + R + P++ D Sbjct: 216 KKRQNTPFYGDSKFVEVDGATLRWDPREVTNPLLGSVHDPIYQGAKKVLAEGGVPEPKTG 275 Query: 99 LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSR---- 153 L+T +LFIDEI L +++ L MED ++ + ++ + + + Sbjct: 276 LVTEAH-AGILFIDEIGELDPMLQNKLLKVMEDKRVKFESSYYDKNDENIPLYIKKLFEE 334 Query: 154 -----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 F LI ATTR NP + N ED++ IV K + + DE Sbjct: 335 GAPADFILIGATTRSPSKINPAFRSRCAEVFFNPLSREDIQQIVINAVKKLTVKIEDE 392 >gi|291530943|emb|CBK96528.1| Recombination protein MgsA [Eubacterium siraeum 70/3] Length = 416 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 10/143 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+E GQ + K +R + + +++F GP G+GKTT+A ++A++ ++ Sbjct: 7 IRPSTLDEVVGQRHILAQGKPLYNII-SRGK-IPNMIFYGPSGVGKTTVANIIAQKTSMS 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 +G A D+ ++ NL +LF+DEI L+ ++ L +E ++ L Sbjct: 65 LYRLNG-TQASTSDIKDVVANLGTFGAAGGILLFLDEIQYLNKKQQQTLLEYIESGEITL 123 Query: 137 MVG--EGPSARSVKINLSRFTLI 157 + E P LSR T+ Sbjct: 124 IASTTENPYFYVYSAVLSRCTVF 146 >gi|159149474|gb|ABW91184.1| CDC48/PAS1/SEC28 family ATPase [Nosema bombycis] Length = 640 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ + + L DR V Sbjct: 375 VLFYGPPGCGKTLLAKAVATECQANFISIKGPELLTMWVGESESNVRELFDRARSAAPCV 434 Query: 109 LFIDEIHRLS 118 LF DEI ++ Sbjct: 435 LFFDEIDSVA 444 >gi|257065889|ref|YP_003152145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus prevotii DSM 20548] gi|256797769|gb|ACV28424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus prevotii DSM 20548] Length = 404 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 29/139 (20%) Query: 9 SRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD-------- 55 + S+ ADI L P+ ++EF GQ +A L V + R + + Sbjct: 48 TNTASEFSADIDLSTPKEIKEFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSDIELQ 107 Query: 56 --HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN----------- 102 ++L +GP G GKT LAQ +AR+L V F + +AG + + N Sbjct: 108 KSNILMLGPTGSGKTLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADY 167 Query: 103 ---LEDRDVLFIDEIHRLS 118 + +R ++++DEI +++ Sbjct: 168 DIDIAERGIIYVDEIDKIT 186 >gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM 17230] gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM 17230] Length = 323 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL E Q E + L F+E + H+LF GPPG GKTT A +A +L Sbjct: 10 RPKTLREIVNQEEIVNRLMKFVEEKN-----MPHLLFAGPPGTGKTTAALALAHDL 60 >gi|195375722|ref|XP_002046649.1| GJ12996 [Drosophila virilis] gi|194153807|gb|EDW68991.1| GJ12996 [Drosophila virilis] Length = 933 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 24/37 (64%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 EA VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 683 EAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGP 719 >gi|167749904|ref|ZP_02422031.1| hypothetical protein EUBSIR_00872 [Eubacterium siraeum DSM 15702] gi|167657216|gb|EDS01346.1| hypothetical protein EUBSIR_00872 [Eubacterium siraeum DSM 15702] Length = 416 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 10/143 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+E GQ + K +R + + +++F GP G+GKTT+A ++A++ ++ Sbjct: 7 IRPSTLDEVVGQRHILAQGKPLYNII-SRGK-IPNMIFYGPSGVGKTTVANIIAQKTSMS 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 +G A D+ ++ NL +LF+DEI L+ ++ L +E ++ L Sbjct: 65 LYRLNG-TQASTSDIKDVVANLGTFGAAGGILLFLDEIQYLNKKQQQTLLEYIESGEITL 123 Query: 137 MVG--EGPSARSVKINLSRFTLI 157 + E P LSR T+ Sbjct: 124 IASTTENPYFYVYSAVLSRCTVF 146 >gi|325967941|ref|YP_004244133.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28] gi|323707144|gb|ADY00631.1| AAA family ATPase, possible cell division control protein cdc48 [Vulcanisaeta moutnovskia 768-28] Length = 748 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 17/124 (13%) Query: 18 DISLLRPRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKT 68 ++ L PR E G +E A ++ IE E H VL +GPPG GKT Sbjct: 170 EMELAMPRVTWEDIGDLEEAKRKIRELIELPLRHPEIFKHLGIEPPKGVLLIGPPGTGKT 229 Query: 69 TLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSII 120 LA+ VA E F S +GP I G+ A L + + ++FIDEI ++ Sbjct: 230 LLAKAVASEANAYFVSINGPEIMSKYYGESEAKLREIFEEAKKNAPAIIFIDEIDAIAPK 289 Query: 121 VEEI 124 EE+ Sbjct: 290 REEV 293 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E NF + GP I Sbjct: 507 ILLFGPPGTGKTLLAKAVATESNANFIAVRGPEI 540 >gi|195018023|ref|XP_001984706.1| GH14878 [Drosophila grimshawi] gi|193898188|gb|EDV97054.1| GH14878 [Drosophila grimshawi] Length = 957 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 24/37 (64%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 EA VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 707 EAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGP 743 >gi|299470801|emb|CBN79847.1| flagellar associated protein [Ectocarpus siliculosus] Length = 947 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 LF GPPG GKT LA+ +A E G NF S GP + G+ A + L D+ + Sbjct: 667 TLFYGPPGCGKTLLAKAIANECGANFISVKGPELLSMWFGESEANVRELFDKARAAAPCI 726 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 727 LFFDEMDSIA 736 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 28/134 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G + +GP I +G+ L +D + + Sbjct: 394 VLMYGPPGCGKTMIARAVASETGAYCFTINGPEIMSKLSGESETNLRKAFDDAEANSPAI 453 Query: 109 LFIDEIHRLSI-------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161 +FIDEI ++ VE+ + + L LM G P+ S +IAAT Sbjct: 454 IFIDEIDSIAPRRDKAGGEVEKRIVSQL----LTLMDGIKPT--------SHVVVIAATN 501 Query: 162 RVGLLTNPLQDRFG 175 R ++ P RFG Sbjct: 502 RPNVI-EPALRRFG 514 >gi|262200933|ref|YP_003272141.1| ATPase AAA [Gordonia bronchialis DSM 43247] gi|262084280|gb|ACY20248.1| AAA ATPase central domain protein [Gordonia bronchialis DSM 43247] Length = 591 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 87/214 (40%), Gaps = 59/214 (27%) Query: 56 HVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTSGPVIAKAGDL------------AALLTN 102 H+ F GPPG GKTT+A++VA+ G+ F + + A D+ +AL+ + Sbjct: 345 HLAFTGPPGTGKTTIARIVAKIYCGLGFIKSDKVIEATRRDMVGEHLGSTAIKTSALIDS 404 Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF-------- 154 D VLFIDE + L Q L G+ +V L+R Sbjct: 405 AMD-GVLFIDEAYTL--------------IQQGLSGGDAFGREAVDTLLARMEDDRDRLV 449 Query: 155 TLIAAT----TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI-----VQRGAKLTGLAVTD 205 +IA R + L RF IR + Y +L I QR + LT AVT+ Sbjct: 450 VIIAGYDAEIDRFLAANDGLSSRFARRIRFDSYTPNELARIGEFIARQRDSLLTSDAVTE 509 Query: 206 -EAACEIAMRSRGTP-----RIAGRLLRRVRDFA 233 EAAC TP R G L+RR D A Sbjct: 510 LEAAC--------TPLYHDLRTEGSLVRRASDLA 535 >gi|294657961|ref|XP_002770526.1| DEHA2E22286p [Debaryomyces hansenii CBS767] gi|199433083|emb|CAR65867.1| DEHA2E22286p [Debaryomyces hansenii] Length = 343 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP +L+E GQ + ++ F+ K L H+LF GPPG GKT+ +ARE+ G N Sbjct: 30 RPDSLDEVYGQQDIVDTVRKFVHEGK-----LPHLLFYGPPGTGKTSTIIALAREIYGPN 84 Query: 82 FRS 84 +++ Sbjct: 85 YKN 87 >gi|217979295|ref|YP_002363442.1| ATP-dependent protease La [Methylocella silvestris BL2] gi|302425063|sp|B8EMF2|LON_METSB RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|217504671|gb|ACK52080.1| ATP-dependent protease La [Methylocella silvestris BL2] Length = 810 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 43/200 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L Q +AR +G F R + G V +A G++ + Sbjct: 381 LCFVGPPGVGKTSLGQSIARAMGRKFVRVSLGGVHDEAEIRGHRRTYVGALPGNIIQAIR 440 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R+ V+ +DEI ++ E+L P D + +V +LS Sbjct: 441 KAGARNCVMMLDEIDKMGASAHGDPGSAMLEVLDPEQNSTFRDNYL-------AVPFDLS 493 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLA-----V 203 R IA + + PL+DR I + + E L + +V+R + GL + Sbjct: 494 RVVFIATANMLDTVPGPLRDRMEIIALTGYTDREKLEIARRYLVRRQLEANGLKPDQVEI 553 Query: 204 TDEAACEIAMRSRGTPRIAG 223 D+A EI RG R AG Sbjct: 554 DDDALIEII---RGYTREAG 570 >gi|45190411|ref|NP_984665.1| AEL196Wp [Ashbya gossypii ATCC 10895] gi|44983307|gb|AAS52489.1| AEL196Wp [Ashbya gossypii ATCC 10895] Length = 333 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 6/67 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP +L++ GQ + ++ F++ + L H+LF GPPG GKT+ +A+E+ Sbjct: 14 IEKYRPDSLDDVYGQRDVVETVRKFVQEGR-----LPHLLFYGPPGTGKTSTICALAKEI 68 Query: 79 -GVNFRS 84 G N+R+ Sbjct: 69 YGKNYRN 75 >gi|108773385|ref|YP_635847.1| cell division protein [Oltmannsiellopsis viridis] gi|122238318|sp|Q20EZ8|FTSHL_OLTVI RecName: Full=ATP-dependent zinc metalloprotease FtsH homolog gi|82541967|gb|ABB82008.1| cell division protein [Oltmannsiellopsis viridis] Length = 2292 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 10/118 (8%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL---AALLTNLEDRD------ 107 +L VGPPG GKT L Q +A E V S +I++ G+ A LT+L R Sbjct: 1337 ILLVGPPGTGKTLLVQAIAGEANVPVLVQSLSLISQPGESDSGAEKLTDLFKRARELSPC 1396 Query: 108 VLFIDEIHRLSIIVEEILY-PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 ++FIDEI L I + ++ P D L+ + + + + S+ + + TTR+G Sbjct: 1397 IVFIDEIDTLGIKRQNLIQNPMGTDNLLNCLYPKNSGQQLSMTDGSKSSTVRTTTRLG 1454 >gi|83749189|ref|ZP_00946191.1| ATPase, AAA family [Ralstonia solanacearum UW551] gi|83724130|gb|EAP71306.1| ATPase, AAA family [Ralstonia solanacearum UW551] Length = 149 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +++E GQ K + A A E +L+ GPPG+GKTTLA+++A Sbjct: 19 LRPHSVDEVIGQRHLLGQGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 76 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEIL 125 F + S V++ D+ + E R ++F+DE+HR + V + Sbjct: 77 FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKAVNHYI 125 >gi|307596113|ref|YP_003902430.1| AAA family ATPase [Vulcanisaeta distributa DSM 14429] gi|307551314|gb|ADN51379.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta distributa DSM 14429] Length = 748 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 17/124 (13%) Query: 18 DISLLRPRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKT 68 ++ L PR E G +E A ++ IE E H VL +GPPG GKT Sbjct: 170 EMELTMPRVTWEDIGDLEEAKRKIRELIELPLRHPEIFKHLGIEPPKGVLLIGPPGTGKT 229 Query: 69 TLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSII 120 LA+ VA E F S +GP I G+ A L + + ++FIDEI ++ Sbjct: 230 LLAKAVASEANAYFISINGPEIMSKYYGESEAKLREIFEEAKKNAPAIIFIDEIDAIAPK 289 Query: 121 VEEI 124 EE+ Sbjct: 290 REEV 293 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E NF + GP I Sbjct: 507 ILLFGPPGTGKTLLAKAVATESNANFIAVRGPEI 540 >gi|241663732|ref|YP_002982092.1| recombination factor protein RarA [Ralstonia pickettii 12D] gi|240865759|gb|ACS63420.1| AAA ATPase central domain protein [Ralstonia pickettii 12D] Length = 449 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 11/130 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + ++ GQ K + A A E +L+ GPPG+GKTTLA+++A Sbjct: 21 LRPHSADDVIGQQHLLGPGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMANAFDAE 78 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED--FQ 133 F + S V++ D+ + E R ++F+DE+HR + ++ P +E F Sbjct: 79 FIALSA-VLSGVKDIREAVERAEQFRANGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFT 137 Query: 134 LDLMVGEGPS 143 E PS Sbjct: 138 FIGATTENPS 147 >gi|123493043|ref|XP_001326199.1| ATPase, AAA family protein [Trichomonas vaginalis G3] gi|121909110|gb|EAY13976.1| ATPase, AAA family protein [Trichomonas vaginalis G3] Length = 325 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 6/62 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+ L++ Q EA LK +E L H++F GPPG GKT+LA + R L G + Sbjct: 15 RPKNLDDIVQQEEAVKALKTTLETGD-----LPHLIFHGPPGTGKTSLALALCRSLFGED 69 Query: 82 FR 83 FR Sbjct: 70 FR 71 >gi|71906933|ref|YP_284520.1| recombination factor protein RarA [Dechloromonas aromatica RCB] gi|71846554|gb|AAZ46050.1| Recombination protein MgsA [Dechloromonas aromatica RCB] Length = 437 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 16/162 (9%) Query: 7 LLSRNVSQEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGP 62 L S N +A ++ LRP +E GQ + L++ E+ + + ++ GP Sbjct: 4 LFSSNAVDRNAPLAEQLRPLIPDEVIGQQHLLGPGKPLRLAFESGQPHS-----MILWGP 58 Query: 63 PGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 PG+GKTTLA+++A + F + S + +A A + R +LF+DEIHR Sbjct: 59 PGVGKTTLARMMATQFKCEFIALSAVFSGIKEVREAVVQAEMWRGQGKRTILFVDEIHRF 118 Query: 118 SIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLI 157 + ++ P +E F E PS LSR ++ Sbjct: 119 NKAQQDGFLPFVESGLFTFIGATTENPSFEVNSALLSRASVY 160 >gi|167539916|ref|XP_001741415.1| hypothetical protein [Entamoeba dispar SAW760] gi|165894117|gb|EDR22201.1| hypothetical protein, conserved [Entamoeba dispar SAW760] Length = 912 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 32/183 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108 +LF GPPG GKT LA+ VA+E NF S +A L +L + V Sbjct: 628 ILFFGPPGTGKTMLAKAVAKESKANFINASLSSLESKWFGEAEKFVKALFSLAAKLSPCV 687 Query: 109 LFIDEI-----HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 +FIDE+ R S E L +F + + +G ++ NL + ++ AT R Sbjct: 688 IFIDEVDALLGKRTSQNENETLRKMKNEF---MTLWDGLKSQ----NLEQIIVLGATNRP 740 Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMRSRGTPR 220 L + + RF I ++ ED + I++ +G K TD C+I+ + TP Sbjct: 741 FDLDDAILRRFSRRILVDLPTKEDRENILKIILKGEK------TD---CDISKIAEKTPG 791 Query: 221 IAG 223 +G Sbjct: 792 YSG 794 >gi|257455948|ref|ZP_05621165.1| ATPase, AAA family [Enhydrobacter aerosaccus SK60] gi|257446694|gb|EEV21720.1| ATPase, AAA family [Enhydrobacter aerosaccus SK60] Length = 428 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 51/266 (19%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP++L+E GQ A + ++ +E L ++ G G+GKTTLA ++A + Sbjct: 14 VRPKSLDEVIGQTHLLGANAPIRRIVEQGY-----LPSIILHGEAGIGKTTLAMLLADAV 68 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 G FR S + A +L +L + V+F+DEIHR + ++ L A+E Sbjct: 69 GRPFRPLSA-INAGVKELREVLAKDDGLFGEPPVVFVDEIHRFNKAQQDALLGAVES--- 124 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLKTIV 192 TLI ATT + N L R + RLN +++ ++ Sbjct: 125 -----------------GDITLIGATTENPSFSVNNALLSRCQV-YRLNPLSEDEISQVL 166 Query: 193 QRG----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLL----RRVRDFAEVAHAKTITRE 244 QR A + +++ I S+G R A LL + +F + + + + + Sbjct: 167 QRAIDDDAVFKQFKIEIQSSQAIFALSQGDARKALNLLELAIQSSPNFKQGSQSAIVVTD 226 Query: 245 -----IADAALLRLAIDKMGFDQLDL 265 +A A+L+R DK G DL Sbjct: 227 DNVVAVAGASLVRY--DKSGDGHYDL 250 >gi|251778579|ref|ZP_04821499.1| ATP-dependent protease, Lon family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082894|gb|EES48784.1| ATP-dependent protease, Lon family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 630 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 62/258 (24%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E + S+N+ +S LRP + +E GQ A +L +K + H++ GPPG Sbjct: 154 EKVTSKNI------MSFLRPDSFDEVVGQERAIKSL-----ISKLSSPYPQHIILYGPPG 202 Query: 65 LGKTTLAQVVAREL-GVNF---------------------RSTSGPVIAKAGD------- 95 +GKTT A++ +E +NF R + P++ D Sbjct: 203 VGKTTAARLALKEAKKLNFTPFDDESKFIEVDGTTLRWDPREITNPLLGSVHDPIYQGSK 262 Query: 96 -----------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG----- 139 L+T VLFIDEI L I++ L +ED +++ Sbjct: 263 RYLSEAGVPEPKPGLVTEAHG-GVLFIDEIGELDHILQNKLLKVLEDKRVEFSSSYYDPD 321 Query: 140 EGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + + + +K F LI ATT+ NP + +D++ IV++ Sbjct: 322 DESTPKYIKYLFDNGAPADFVLIGATTKSPSEINPALRSRATEVYFEPLSSDDIELIVKK 381 Query: 195 GAKLTGLAVTDEAACEIA 212 A+ + + + A +I+ Sbjct: 382 AAEKLNVTLEEGVAKKIS 399 >gi|187933433|ref|YP_001887715.1| ATP-dependent protease, Lon family [Clostridium botulinum B str. Eklund 17B] gi|187721586|gb|ACD22807.1| ATP-dependent protease, Lon family [Clostridium botulinum B str. Eklund 17B] Length = 630 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 62/258 (24%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E + S+N+ +S LRP + +E GQ A +L +K + H++ GPPG Sbjct: 154 EKVTSKNI------MSFLRPDSFDEVVGQERAIKSL-----ISKLSSPYPQHIILYGPPG 202 Query: 65 LGKTTLAQVVAREL-GVNF---------------------RSTSGPVIAKAGD------- 95 +GKTT A++ +E +NF R + P++ D Sbjct: 203 VGKTTAARLALKEAKKLNFTPFDDESKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSK 262 Query: 96 -----------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG----- 139 L+T VLFIDEI L I++ L +ED +++ Sbjct: 263 RYLSEAGVPEPKPGLVTEAHG-GVLFIDEIGELDHILQNKLLKVLEDKRVEFSSSYYDPD 321 Query: 140 EGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + + + +K F LI ATT+ NP + +D++ IV++ Sbjct: 322 DESTPKYIKYLFDNGAPADFVLIGATTKSPSEINPALRSRATEVYFEPLSSDDIELIVKK 381 Query: 195 GAKLTGLAVTDEAACEIA 212 A+ + + + A +I+ Sbjct: 382 AAEKLNVTLEEGVAKKIS 399 >gi|156743220|ref|YP_001433349.1| ATPase central domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156234548|gb|ABU59331.1| AAA ATPase central domain protein [Roseiflexus castenholzii DSM 13941] Length = 660 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 12/70 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA----GDLAALLTNLEDRD----- 107 VL +GPPG GK+ +AQ VA E GV F S P + A G++ +L + R Sbjct: 153 VLLIGPPGTGKSYMAQAVATEAGVPFGYLSAPSLTSAWMGMGNMKVMLLYRKARKLAREY 212 Query: 108 ---VLFIDEI 114 +LFIDEI Sbjct: 213 GACILFIDEI 222 >gi|71027749|ref|XP_763518.1| cell division cycle protein 48 [Theileria parva strain Muguga] gi|68350471|gb|EAN31235.1| cell division cycle protein 48, putative [Theileria parva] Length = 954 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + L D+ + Sbjct: 711 VLFYGPPGCGKTLLAKAIAHECNANFISIKGPELLTMWFGESEANVRELFDKARASAPCI 770 Query: 109 LFIDEIHRLS 118 LF DEI ++ Sbjct: 771 LFFDEIDSIA 780 >gi|309791201|ref|ZP_07685733.1| ATP-dependent protease La [Oscillochloris trichoides DG6] gi|308226763|gb|EFO80459.1| ATP-dependent protease La [Oscillochloris trichoides DG6] Length = 811 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 122/294 (41%), Gaps = 61/294 (20%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE-ALDH--------VLFVGPPGLGKT 68 DI + R E+ G + + ++ + RAE DH + FVGPPG+GKT Sbjct: 319 DIGVARQVLDEDHYGLTKIKERILEYLAVKQRRAELGDDHGRAGREPILAFVGPPGVGKT 378 Query: 69 TLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNLEDRD-VLFID 112 +L Q +AR LG NF R + G V +A G L L D V+ +D Sbjct: 379 SLGQSIARALGRNFVRMSLGGVRDEAELRGFRRTYIGSQPGRLIQELRRAGSSDPVILLD 438 Query: 113 EIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 EI +L + + E+L P + D + ++ +LS+ IA Sbjct: 439 EIDKLGNDYRGDPASALLEVLDPEQNNTFTDHYL-------NLPFDLSQVLFIATANSWD 491 Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKT------IVQRGAKLTGLAVTDEAACEIAMRS--- 215 + L+DR + I L+ Y IED K +V R + GL ++ E A+R+ Sbjct: 492 NVPPALRDRMEV-IDLSGY-IEDEKVQIAQTHLVPRQLRANGLRPSEAEVSEAALRTIIG 549 Query: 216 --------RGTPRIAGRLLRRV-RDFAEVAHAKTITREIADAALLRLAIDKMGF 260 R R G +LR+V R AE + + + D A +R A+ + + Sbjct: 550 DYTREAGVRNLERHIGGVLRKVTRRLAE-QNEPSEAAFVVDPAFVRTALGRQRY 602 >gi|242398094|ref|YP_002993518.1| Replication factor C small subunit [Thermococcus sibiricus MM 739] gi|242264487|gb|ACS89169.1| Replication factor C small subunit [Thermococcus sibiricus MM 739] Length = 766 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 6/64 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP L++ GQ LK +++ A ++ H+LF GPPG GKTT + +AREL G + Sbjct: 23 RPERLDDIVGQDHIVKRLKHYVKTA-----SMPHLLFAGPPGTGKTTSSLALARELFGEH 77 Query: 82 FRST 85 +R Sbjct: 78 WRHN 81 >gi|148554068|ref|YP_001261650.1| ATP-dependent protease La [Sphingomonas wittichii RW1] gi|148499258|gb|ABQ67512.1| ATP-dependent protease La [Sphingomonas wittichii RW1] Length = 801 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 36/182 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + F GPPG+GKT+L Q +A+ +G F R + G V +A G++ + Sbjct: 372 LCFAGPPGVGKTSLGQSIAKAMGREFVRVSLGGVHDEAEIRGHRRTYIGALPGNIIQAIR 431 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 RD V+ +DEI +L S + E+L P D +G V +LS Sbjct: 432 KAGTRDCVMMLDEIDKLGRGIQGDPSAAMLEVLDPEQNGTFRDNYLG-------VPFDLS 484 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR---GAKLTGLAVTDEAAC 209 R IA + + PL+DR + I L Y E+ I +R G +L V+ EA Sbjct: 485 RVLFIATANMLDTIPGPLRDRMEV-ISLPGYTEEEKLHIARRYLVGRQLGANGVS-EAQV 542 Query: 210 EI 211 EI Sbjct: 543 EI 544 >gi|300726155|ref|ZP_07059612.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella bryantii B14] gi|299776625|gb|EFI73178.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella bryantii B14] Length = 821 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 6/86 (6%) Query: 1 MMDREGLLSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEAL 54 ++ R + +V +ED + L L R E GQ EA S + +E AKA + L Sbjct: 506 VLQRTCKIDASVMKEDDNKQLKTLYKRMAERIYGQDEAISQVVEAVEMAKAGLQDDNKPL 565 Query: 55 DHVLFVGPPGLGKTTLAQVVARELGV 80 +LFVGP G+GKT +A+V+A++LG+ Sbjct: 566 ASLLFVGPTGVGKTEVARVLAQQLGI 591 >gi|302877500|ref|YP_003846064.1| MgsA AAA+ ATPase-like [Gallionella capsiferriformans ES-2] gi|302580289|gb|ADL54300.1| MgsA AAA+ ATPase-like [Gallionella capsiferriformans ES-2] Length = 439 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 17/130 (13%) Query: 12 VSQEDADIS-LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGK 67 +Q DA ++ LRP+ ++E GQ L++ ++ + L ++ GPPG+GK Sbjct: 7 AAQPDAPLAERLRPKHIDEVIGQSHLLGEGRPLRLAFQSGR-----LHSMILWGPPGVGK 61 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120 TTLA+++A F S V++ D+ + + +LF+DE+HR + Sbjct: 62 TTLARLMASAFDAEFMPLSA-VLSGVKDIREAIAQAQRVLQQNGRHTILFVDEVHRFNKS 120 Query: 121 VEEILYPAME 130 ++ P +E Sbjct: 121 QQDAFLPFVE 130 >gi|146304983|ref|YP_001192299.1| AAA family ATPase [Metallosphaera sedula DSM 5348] gi|145703233|gb|ABP96375.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348] Length = 760 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 17/131 (12%) Query: 11 NVSQEDADISLLRPRTLEEFTGQV-EACSNLKVFIEAAKARAEALDH--------VLFVG 61 + +E + + PR E G + E L+ IE E H VL G Sbjct: 166 TIKEEPVREAQVYPRVTWEDIGDLDEVKEKLREMIELPMKHPELFQHLGIEPPKGVLLYG 225 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----VLFIDE 113 PPG+GKT LA+ +A E+G F + +GP I G+ L + +D D ++FIDE Sbjct: 226 PPGVGKTLLARALANEIGAYFVTINGPEIMSKFYGESEQRLREIFDDADKNAPSIIFIDE 285 Query: 114 IHRLSIIVEEI 124 I ++ EE+ Sbjct: 286 IDAIAPKREEV 296 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E G NF + GP V++K G+ + + R V Sbjct: 498 VLLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESEKAIREIFKRARQTAPTV 557 Query: 109 LFIDEIHRLS 118 +F DEI ++ Sbjct: 558 VFFDEIDSIA 567 >gi|310821709|ref|YP_003954067.1| ATP-dependent protease la 2 [Stigmatella aurantiaca DW4/3-1] gi|309394781|gb|ADO72240.1| ATP-dependent protease La 2 [Stigmatella aurantiaca DW4/3-1] Length = 835 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 97/230 (42%), Gaps = 52/230 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + VGPPG+GKT+L Q VAR G F R + G V +A G + L R Sbjct: 375 LCLVGPPGVGKTSLGQSVARATGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRFIQSMK 434 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V+ +DEI +L S + E+L P + D + V +LS Sbjct: 435 KSGMKNPVMMLDEIDKLGADFRGDPSAALLEVLDPEQNNTFSDHYL-------DVPFDLS 487 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI-----VQRGAKLTGLA----- 202 + IA ++ + PL+DR I I L Y E+ ++I V + K GL+ Sbjct: 488 KVMFIATANQLDPIPGPLRDRMEI-IELTGYTFEEKQSIARIHLVPKQLKEHGLSTDHID 546 Query: 203 VTDEAACEIAMRSRGTPRIAG--RLLRRVRDFA-----EVAHAKTITREI 245 VTDEA + + R AG L RR+ D EVA KT + I Sbjct: 547 VTDEALLTL---TTSYTREAGVRNLERRIADLCRAVAVEVAGGKTEKQTI 593 >gi|229827998|ref|ZP_04454067.1| hypothetical protein GCWU000342_00047 [Shuttleworthia satelles DSM 14600] gi|229792592|gb|EEP28706.1| hypothetical protein GCWU000342_00047 [Shuttleworthia satelles DSM 14600] Length = 480 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 83/183 (45%), Gaps = 46/183 (25%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFRST------SGPVIAKAGDLAALLTNLEDR 106 H++F G PG GKTT+A+++AR ++GV + SG V G AL T + + Sbjct: 189 HLVFSGNPGTGKTTVARIIARLYKQIGVLSKGQLVECDRSGLVAGFVGQ-TALKTQEKIQ 247 Query: 107 ----DVLFIDEIHRLS----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 VLFIDE + L+ VE IL AMED + DL+V Sbjct: 248 AALGGVLFIDEAYALTPGDGTNDYGQEAVETIL-KAMEDHRDDLVV-------------- 292 Query: 153 RFTLIAATT---RVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208 ++A T R + +NP L+ RF I Y IE+L TI + + + DEA Sbjct: 293 ---IVAGYTGPMRHFVESNPGLKSRFNKYIDFPDYSIEELLTIFEGNCRKYEYVLADEAK 349 Query: 209 CEI 211 E+ Sbjct: 350 EEV 352 >gi|282896586|ref|ZP_06304604.1| AAA ATPase, central region protein [Raphidiopsis brookii D9] gi|281198528|gb|EFA73411.1| AAA ATPase, central region protein [Raphidiopsis brookii D9] Length = 615 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 8/80 (10%) Query: 47 AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLE 104 AK E VL VGPPG GKT A+ +A ELGVN+ + GP VI+K G+ L + Sbjct: 122 AKLGLEPTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVISKYYGEAEQKLRGIF 181 Query: 105 DRD------VLFIDEIHRLS 118 ++ ++FIDEI L+ Sbjct: 182 EKAAKNAPCIIFIDEIDSLA 201 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101 + +A A +L GPPG GKT LA+ VA + NF +GP V A + L Sbjct: 389 QTKAVAPRGILLWGPPGTGKTLLAKAVASQARANFIGVNGPELLTRWVGASEQAVRELFA 448 Query: 102 NLEDRD--VLFIDEIHRLS 118 D V+FIDEI L+ Sbjct: 449 KARQADPCVIFIDEIDTLA 467 >gi|118594830|ref|ZP_01552177.1| ATP-dependent protease ATP-binding subunit [Methylophilales bacterium HTCC2181] gi|118440608|gb|EAV47235.1| ATP-dependent protease ATP-binding subunit [Methylophilales bacterium HTCC2181] Length = 425 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 32/133 (24%) Query: 18 DISLLRPRTL-----EEFTGQVEACSNLKVFIEAAKARAEALDH-------------VLF 59 +++LL+P+ L E GQ EA +L V + R + DH +LF Sbjct: 61 ELTLLKPKELFLKLDEHVIGQEEAKKSLAVAVYNHYKRLQVSDHKDELSDVKISKSNILF 120 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNLEDR--------- 106 +GP G GKT LAQ +A L V F + +AG D+ ++ L R Sbjct: 121 IGPTGSGKTLLAQTLADLLQVPFVMADATTLTEAGYVGEDVENIMQKLLQRCDYDIDKAQ 180 Query: 107 -DVLFIDEIHRLS 118 +++IDE+ ++S Sbjct: 181 KGIVYIDEVDKIS 193 >gi|108763822|ref|YP_632173.1| ATP-dependent protease La [Myxococcus xanthus DK 1622] gi|547861|sp|P36774|LON2_MYXXA RecName: Full=Lon protease 2; AltName: Full=ATP-dependent protease La 2 gi|309546|gb|AAA72018.1| ATP-dependent protease [Myxococcus xanthus] gi|435451|dbj|BAA02491.1| ATP-dependent protease La [Myxococcus xanthus] gi|108467702|gb|ABF92887.1| ATP-dependent protease La [Myxococcus xanthus DK 1622] Length = 827 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 82/356 (23%), Positives = 137/356 (38%), Gaps = 85/356 (23%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTT 69 +S+++ DI R + ++ G + + ++ K + + +L VGPPG+GKT+ Sbjct: 328 KISEDNLDIENARQQLDKDHFGIKKVKKRILEYLAVRKLKNDMRGPILCLVGPPGVGKTS 387 Query: 70 LAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------------DVLFIDE 113 L Q VA+ G F R + G V +A G + L R V+ +DE Sbjct: 388 LGQSVAKATGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRFIQSMKKAGTKNPVMMLDE 447 Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 I +L S + E+L P + D + V +LS+ +A ++ Sbjct: 448 IDKLGADFRGDPSAALLEVLDPEQNNTFSDHYL-------DVPFDLSKVMFVATANQLDP 500 Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTI-----VQRGAKLTGLA-----VTDEAACEIAMRS 215 + PL+DR I I L Y E+ ++I V + K GL+ +TDEA Sbjct: 501 IPGPLRDRMEI-IELTGYTFEEKQSIARIHLVPKQLKEHGLSPDHIDITDEA-------- 551 Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275 LL + A + + R IAD +A Sbjct: 552 ---------LLTLTTAYTREAGVRNLERRIAD-------------------ICRAVAVEV 583 Query: 276 GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331 GG +TI+A D +++++ P M +RT + +AW G D+ Sbjct: 584 AGGKTEKQTINA------DRVKEILGPEMFYSEVAERTEVPGVATGLAWTAAGGDL 633 >gi|188588300|ref|YP_001922698.1| ATP-dependent protease, Lon family [Clostridium botulinum E3 str. Alaska E43] gi|188498581|gb|ACD51717.1| ATP-dependent protease, Lon family [Clostridium botulinum E3 str. Alaska E43] Length = 630 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 62/258 (24%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 E + S+N+ +S LRP + +E GQ A +L +K + H++ GPPG Sbjct: 154 EKVTSKNI------MSFLRPDSFDEVVGQERAIKSL-----ISKLSSPYPQHIILYGPPG 202 Query: 65 LGKTTLAQVVAREL-GVNF---------------------RSTSGPVIAKAGD------- 95 +GKTT A++ +E +NF R + P++ D Sbjct: 203 VGKTTAARLALKEAKKLNFTPFDDESKFIEVDGTTLRWDPREITNPLLGSVHDPIYQGSK 262 Query: 96 -----------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG----- 139 L+T VLFIDEI L I++ L +ED +++ Sbjct: 263 RYLSEAGVPEPKPGLVTEAHG-GVLFIDEIGELDHILQNKLLKVLEDKRVEFSSSYYDPD 321 Query: 140 EGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + + + +K F LI ATT+ NP + +D++ IV++ Sbjct: 322 DESTPKYIKYLFDNGAPADFVLIGATTKSPSEINPALRSRATEVYFEPLSSDDIELIVKK 381 Query: 195 GAKLTGLAVTDEAACEIA 212 A+ + + + A +I+ Sbjct: 382 AAEKLNVTLEEGVAKKIS 399 >gi|156083703|ref|XP_001609335.1| cell division cycle protein ATPase [Babesia bovis T2Bo] gi|154796586|gb|EDO05767.1| cell division cycle protein ATPase, putative [Babesia bovis] Length = 922 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + L D+ + Sbjct: 673 VLFYGPPGCGKTLLAKAIAHECNANFISIKGPELLTMWFGESEANVRELFDKARAAAPCI 732 Query: 109 LFIDEIHRLS 118 LF DEI ++ Sbjct: 733 LFFDEIDSIA 742 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108 V+ GPPG GKT +A+ +A E G + +GP I G+ A L ++ + Sbjct: 398 VILHGPPGTGKTLIARAIASETGAHCVVINGPEIMSKHVGESEAKLRRAFEKASKNSPAI 457 Query: 109 LFIDEIHRLSIIVEEI---LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 +FIDEI ++ E+ L + L LM G PS V ++AAT R+ Sbjct: 458 IFIDEIDSIATKREKSPSELERRIVSQLLTLMDGIEPSKNVV--------VLAATNRINS 509 Query: 166 LTNPLQDRFG 175 + L+ RFG Sbjct: 510 IDTALR-RFG 518 >gi|326336645|ref|ZP_08202813.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691115|gb|EGD33086.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 363 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 97/258 (37%), Gaps = 55/258 (21%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T ++ GQ L E A A +LF GP G+GKTT A+++A++ +N Sbjct: 12 RPQTFKDVVGQQAITDTL----ENAIANDHLAQALLFTGPRGVGKTTCARILAKK--INE 65 Query: 83 RSTSGPVIAKAGDLAALLTNLE------------------------DRDVLFIDEIHRLS 118 ++TS + D A + L+ V IDE+H LS Sbjct: 66 KTTSTQ--EEDNDFAFNIFELDAASNNSVEGIRSLIEQVRIPPQVGKYKVYIIDEVHMLS 123 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 F L E P A ++ I ATT + + R I Sbjct: 124 NAA----------FNAFLKTLEEPPAHAI--------FILATTEKHKVIPTILSRCQI-F 164 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 I D + ++ AK GL DEA IA ++ G R A + RV F Sbjct: 165 DFKRITINDAREYLKYIAKEQGLNAEDEALQIIAQKADGAMRDALSIFDRVVSFC----G 220 Query: 239 KTITREIADAALLRLAID 256 KTITR+ L L D Sbjct: 221 KTITRQAVSEILNVLDYD 238 >gi|316975253|gb|EFV58702.1| putative ATPase, AAA family [Trichinella spiralis] Length = 691 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 25/31 (80%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT LA+ +A E GVNF +TSG Sbjct: 259 VLLVGPPGIGKTLLARAIAGEAGVNFFNTSG 289 >gi|294340162|emb|CAZ88534.1| Cell division protease ftsH [Thiomonas sp. 3As] Length = 629 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 8/91 (8%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92 E LK +E ++ A A VL VGPPG+GKT LA+ VA E GV F S SG + Sbjct: 192 EVVDFLKNPVEHSRLGARAPKGVLLVGPPGVGKTLLARAVAGEAGVPFFSISGSEFVEMF 251 Query: 93 AGDLAALLTNLEDR------DVLFIDEIHRL 117 G AA + +L ++ ++FIDE+ L Sbjct: 252 VGVGAARVRDLFEQAREKSPAIIFIDELDAL 282 >gi|288555372|ref|YP_003427307.1| recombination factor protein RarA [Bacillus pseudofirmus OF4] gi|288546532|gb|ADC50415.1| recombination factor protein RarA, AAA ATPase [Bacillus pseudofirmus OF4] Length = 422 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 3/110 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+ +E+ GQ + K+ L ++ GPPG+GKT++A +A Sbjct: 10 MRPKKIEDIIGQSHLVGDGKLLRRMVDVGQ--LSSMILYGPPGVGKTSIATAIAGSTDTP 67 Query: 82 FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F+ + V K ++A + + ++ +DE+HRL ++ L P +E Sbjct: 68 FKLLNAVVHNKKDMEIAVAEAKMHGQLIVILDEVHRLDKAKQDFLLPHLE 117 >gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon] gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon] Length = 322 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR LEE +GQ NL+ ++ + L H++F GP G+GKT A +ARE Sbjct: 12 RPRKLEEVSGQEAIIRNLQSYV-----KKRNLPHLIFSGPAGVGKTAAAVAMAREF 62 >gi|187929625|ref|YP_001900112.1| recombination factor protein RarA [Ralstonia pickettii 12J] gi|309781609|ref|ZP_07676343.1| magnesium chelatase, subunit ChlI family [Ralstonia sp. 5_7_47FAA] gi|187726515|gb|ACD27680.1| AAA ATPase central domain protein [Ralstonia pickettii 12J] gi|308919584|gb|EFP65247.1| magnesium chelatase, subunit ChlI family [Ralstonia sp. 5_7_47FAA] Length = 435 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP + ++ GQ K + A A E +L+ GPPG+GKTTLA+++A Sbjct: 7 LRPHSADDVIGQQHLLGPGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMANAFDAE 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130 F + S V++ D+ + E R ++F+DE+HR + ++ P +E Sbjct: 65 FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 118 >gi|85057568|ref|YP_456484.1| recombination factor protein RarA [Aster yellows witches'-broom phytoplasma AYWB] gi|42632634|gb|AAS22248.1| AAA type ATPase [Aster yellows witches'-broom phytoplasma] gi|84789673|gb|ABC65405.1| ATPase, AAA family [Aster yellows witches'-broom phytoplasma AYWB] Length = 414 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP T+ + GQ ++ I A ++F G PG+GK++LAQV+A +L + Sbjct: 10 LRPSTITDIIGQSHLINDQNGIISRMLKNNYA-SSLIFYGVPGIGKSSLAQVLANDLQIK 68 Query: 82 FRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 + I K L ++ + + +L I+EIHR++ ++IL +E+ L Sbjct: 69 Y-DIFNAAIDKKSKLEKIIQQALNFKKFILIIEEIHRMNKDRQDILLQYLENGHL 122 >gi|240146205|ref|ZP_04744806.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia intestinalis L1-82] gi|257201661|gb|EEU99945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia intestinalis L1-82] gi|291536690|emb|CBL09802.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia intestinalis M50/1] gi|291537974|emb|CBL11085.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia intestinalis XB6B4] Length = 423 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 28/141 (19%) Query: 12 VSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD---------HV 57 V++ + I+LL+P L+ F GQ +A L V + R A D ++ Sbjct: 58 VAEPEEQINLLKPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRIMAGDDLGVELQKSNI 117 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL--------TNLE- 104 L +GP G GKT LAQ +AR L V F + +AG D+ +L N+E Sbjct: 118 LMLGPTGSGKTLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYNIER 177 Query: 105 -DRDVLFIDEIHRLSIIVEEI 124 R +++IDEI ++S E + Sbjct: 178 AQRGIIYIDEIDKISKKSENV 198 >gi|7524829|ref|NP_045831.1| cell division protein FtsH [Chlorella vulgaris] gi|2224422|dbj|BAA57906.1| cell division protein FtsH [Chlorella vulgaris] Length = 930 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 15/120 (12%) Query: 49 ARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---E 104 +E L H +L GPPG GKT L Q +A E V SG + + G+ AA L E Sbjct: 211 THSETLPHGILLTGPPGTGKTLLVQALAGEAQVPVIVLSGSSLMEPGESAAFKLQLVFQE 270 Query: 105 DRD----VLFIDEIHRLSIIVEEILY------PAMEDFQLDLMVGEGPSARSVKINLSRF 154 R ++FIDEI LS ++L P E F ++ PS +SVK S F Sbjct: 271 ARQLAPCIVFIDEIDTLSSKRSQLLQNPMANDPGFESFLESFLLQSKPS-QSVKKTESFF 329 >gi|291563764|emb|CBL42580.1| ATP-dependent Clp protease ATP-binding subunit ClpX [butyrate-producing bacterium SS3/4] Length = 433 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 28/134 (20%) Query: 19 ISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGPPG 64 I+LL+P+ ++EF GQ EA L V + R + ++L +GP G Sbjct: 62 INLLKPKEIKEFLDDYVIGQDEAKKVLSVAVYNHYKRITSKMESDVDLQKSNILMLGPTG 121 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------LF 110 GKT LAQ +A+ LGV F + +AG D+ +L L D DV ++ Sbjct: 122 SGKTYLAQTLAKLLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADNDVSRAEYGIIY 181 Query: 111 IDEIHRLSIIVEEI 124 IDEI +++ E + Sbjct: 182 IDEIDKITKKSENV 195 >gi|216263439|ref|ZP_03435434.1| DNA polymerase III, subunits gamma and tau [Borrelia afzelii ACA-1] gi|215980283|gb|EEC21104.1| DNA polymerase III, subunits gamma and tau [Borrelia afzelii ACA-1] Length = 566 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 25/227 (11%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K + +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKIA----NAYIFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + + D DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --KNGPTVMPCGECSNCKSIESDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ + I ATT L ++ R +E Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 + ++++ + DEA IA +S G+ R A L +V F Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFT 229 >gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str. Fusaro] gi|110287811|sp|Q46C63|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str. Fusaro] Length = 334 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ I RP L++ GQ E LK ++ L H+LF GPPG+GKT A Sbjct: 7 KEEIWIEKYRPVRLDQVAGQEETIERLKSYVATKN-----LPHLLFSGPPGVGKTASAVS 61 Query: 74 VAREL 78 +ARE+ Sbjct: 62 IAREI 66 >gi|325677941|ref|ZP_08157583.1| ATPase, AAA family [Ruminococcus albus 8] gi|324110495|gb|EGC04669.1| ATPase, AAA family [Ruminococcus albus 8] Length = 313 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 69/163 (42%), Gaps = 42/163 (25%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFR--------------------STSGPVIAKAGD 95 HVL PG GKTTLA +AR LG+ F+ G ++ AG Sbjct: 35 HVLLEDAPGTGKTTLALALARSLGLKFKRLQLTPDTVASDITGYSAYDPAKGGMVFHAG- 93 Query: 96 LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR-F 154 A +TNL L DE++R S + L AME+ QL + V L + F Sbjct: 94 --AAMTNL-----LLADELNRTSGRTQSALLEAMEEGQL--------TVDGVTYPLPKPF 138 Query: 155 TLIAATTRVGLLTN---PLQ--DRFGIPIRLNFYEIEDLKTIV 192 T+IA VG PL DRF + + L + E LK ++ Sbjct: 139 TVIATQNPVGTAGTAAIPLSQLDRFMVRLSLGAPDSESLKKLL 181 >gi|225552254|ref|ZP_03773194.1| DNA polymerase III, subunits gamma and tau [Borrelia sp. SV1] gi|225371252|gb|EEH00682.1| DNA polymerase III, subunits gamma and tau [Borrelia sp. SV1] Length = 560 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 96/228 (42%), Gaps = 25/228 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVIETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ + I ATT L ++ R +E Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 + ++++ + DEA IA +S G+ R A L ++ F + Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230 >gi|300703421|ref|YP_003745023.1| ATPase [Ralstonia solanacearum CFBP2957] gi|299071084|emb|CBJ42393.1| putative ATPase, AAA family [Ralstonia solanacearum CFBP2957] Length = 137 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 9/110 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +++E GQ K + A A E +L+ GPPG+GKTTLA+++A Sbjct: 7 LRPHSVDEVIGQRHLLGPGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEIL 125 F + S V++ D+ + E R ++F+DE+HR + V+ + Sbjct: 65 FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKAVKSFI 113 >gi|282899399|ref|ZP_06307366.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii CS-505] gi|281195663|gb|EFA70593.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii CS-505] Length = 615 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +L++ G + +LK I AK E VL VGPPG GKT A+ +A E Sbjct: 93 SLKDIGGLSQVVKDLKELIAIPLKRPDLLAKLGLEPTHGVLLVGPPGTGKTLTARALAEE 152 Query: 78 LGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VLFIDEIHRLS 118 LGVN+ + GP VI+K G+ L + ++ ++FIDEI L+ Sbjct: 153 LGVNYIALVGPEVISKYYGEAEQKLRGIFEKAAKNAPCIIFIDEIDSLA 201 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 8/79 (10%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101 + +A A +L GPPG GKT LA+ VA + NF + +GP V A + L T Sbjct: 389 QTKAVAPRGILLWGPPGTGKTLLAKAVASQARANFIAVNGPELLTRWVGASEQAVRELFT 448 Query: 102 NLEDRD--VLFIDEIHRLS 118 D V+FIDEI L+ Sbjct: 449 KARQADPCVIFIDEIDTLA 467 >gi|261403322|ref|YP_003247546.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius M7] gi|261370315|gb|ACX73064.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius M7] Length = 903 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ IE E + VL VGPPG GKT LA+ VA E Sbjct: 177 TYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236 Query: 78 LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLS 118 G NF +GP I +L + E+ ++FIDE+ ++ Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDELDAIA 285 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 21/34 (61%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E G NF S GP I Sbjct: 489 VLLFGPPGTGKTLLAKAVANESGANFISVKGPEI 522 >gi|207742683|ref|YP_002259075.1| hypothetical protein RSIPO_00874 [Ralstonia solanacearum IPO1609] gi|206594077|emb|CAQ61004.1| hypothetical protein RSIPO_00874 [Ralstonia solanacearum IPO1609] Length = 137 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +++E GQ K + A A E +L+ GPPG+GKTTLA+++A Sbjct: 7 LRPHSVDEVIGQRHLLGQGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEIL 125 F + S V++ D+ + E R ++F+DE+HR + V + Sbjct: 65 FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKAVNHYI 113 >gi|269925653|ref|YP_003322276.1| ATP-dependent protease La [Thermobaculum terrenum ATCC BAA-798] gi|269789313|gb|ACZ41454.1| ATP-dependent protease La [Thermobaculum terrenum ATCC BAA-798] Length = 808 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L Q +AR LG F R + G + +A G + + Sbjct: 379 LCFVGPPGVGKTSLGQSIARALGRKFIRMSLGGIRDEAEIRGHRRTYIGAMPGRIIQGMR 438 Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + +D +F +DEI ++++ + E+L PA +D +G V +LS Sbjct: 439 RVGTKDPVFMLDEIDKITVGFQGDPAAALLEVLDPAQNHSFVDNYLG-------VPFDLS 491 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + IA + + PL DR + I+++ Y ++ I QR Sbjct: 492 QVLFIATANTLDTIPAPLLDRMEV-IQISGYTEQEKLFIAQR 532 >gi|148655982|ref|YP_001276187.1| ATPase central domain-containing protein [Roseiflexus sp. RS-1] gi|148568092|gb|ABQ90237.1| AAA ATPase, central domain protein [Roseiflexus sp. RS-1] Length = 660 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 12/70 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA----GDLAALLTNLEDRD----- 107 VL +GPPG GK+ +AQ VA E GV F S P + A G++ +L + R Sbjct: 153 VLLIGPPGTGKSYMAQAVATEAGVPFGYLSAPSLTSAWMGMGNMKVMLLYRKARKLAREY 212 Query: 108 ---VLFIDEI 114 +LFIDEI Sbjct: 213 GACILFIDEI 222 >gi|312110107|ref|YP_003988423.1| MgsA AAA+ ATPase-like protein [Geobacillus sp. Y4.1MC1] gi|311215208|gb|ADP73812.1| MgsA AAA+ ATPase-like protein [Geobacillus sp. Y4.1MC1] Length = 431 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR ++E GQ + K + +L G PG+GKT+LA +A + + Sbjct: 12 MRPRNIDEIVGQQHIIGPHTALYKMIKN--GHVPSLLLYGEPGVGKTSLAHAIAGTVQRD 69 Query: 82 FRSTSGPVIAKAG-----DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + + K + A L N+ +LFIDEIHR + ++ L P +E Sbjct: 70 FFAINATASGKKEMEEVVETAKLTGNV----ILFIDEIHRFNKAQQDYLLPHIE 119 >gi|224000545|ref|XP_002289945.1| replication factor C 37 KD subunit [Thalassiosira pseudonana CCMP1335] gi|220975153|gb|EED93482.1| replication factor C 37 KD subunit [Thalassiosira pseudonana CCMP1335] Length = 346 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP++L++ + Q E S LK +E + L H+LF GPPG GKT++A + R+L Sbjct: 22 RPKSLQDVSHQGEIISTLKNAVETNR-----LPHLLFYGPPGTGKTSVALALCRQL 72 >gi|123482551|ref|XP_001323818.1| ATPase, AAA family protein [Trichomonas vaginalis G3] gi|121906690|gb|EAY11595.1| ATPase, AAA family protein [Trichomonas vaginalis G3] Length = 325 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 6/62 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+ L++ Q EA LK +E L H++F GPPG GKT+LA + R L G + Sbjct: 15 RPKNLDDIVQQEEAVKALKTTLETGD-----LPHLIFHGPPGTGKTSLALALCRSLFGDD 69 Query: 82 FR 83 FR Sbjct: 70 FR 71 >gi|307212720|gb|EFN88396.1| ATPase WRNIP1 [Harpegnathos saltator] Length = 562 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 15/135 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79 +RP +L F GQ + E + + E + +L+ GPPG GKT+LA V+A Sbjct: 122 MRPTSLLNFIGQEHILGPHTMLSELLQ-KGEIPNMILW-GPPGCGKTSLANVIAHRCKND 179 Query: 80 -------VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 V + V + + +AA R ++F+DEIHR + + +++ P +E Sbjct: 180 ASHKLRYVKLSAAMAGVQEVKEVISVAANHVKYAQRTIVFMDEIHRFNKMQQDVFLPHVE 239 Query: 131 DFQLDLM--VGEGPS 143 + L+ E PS Sbjct: 240 SGSITLIGATTENPS 254 >gi|167769902|ref|ZP_02441955.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM 17241] gi|167667893|gb|EDS12023.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM 17241] Length = 421 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 16/146 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL++ GQ KV +E+ + +++F GP G+GKTT+A ++A+ Sbjct: 9 IRPQTLDDVVGQEHLLGRDKVLRRMVESGN-----IPNLIFYGPSGVGKTTVASIIAKRA 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133 G +G A D+ ++ D +L++DEI L+ ++ L +E+ Sbjct: 64 GKKLCKLNG-TTASTSDIRDVVGETNTIDGIGGVILYLDEIQYLNKKQQQTLLEFIENGS 122 Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E P LSR T+ Sbjct: 123 ITLIASTTENPYFYVYNAVLSRSTVF 148 >gi|332027158|gb|EGI67251.1| Nuclear valosin-containing protein-like protein [Acromyrmex echinatior] Length = 942 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 677 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 708 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109 L GPPG GKT LA VA EL + +GP V +G+ A + L ++ ++ Sbjct: 315 LLHGPPGCGKTLLAHAVAGELNIPLIKVAGPELVTGVSGESEARIRELFEQALILAPCII 374 Query: 110 FIDEI 114 F+DEI Sbjct: 375 FLDEI 379 >gi|73975782|ref|XP_860539.1| PREDICTED: similar to peroxisome biogenesis factor 1 isoform 3 [Canis familiaris] Length = 1227 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 21/32 (65%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA V+ARE G+NF S GP Sbjct: 821 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 852 >gi|218283047|ref|ZP_03489149.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989] gi|218216241|gb|EEC89779.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989] Length = 604 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIE----AAKAR---AEALDHVLFVGPPGLGKTTLAQVVARE 77 +T + GQ EA NL+ ++ AK + A+ L VGPPG GKT LA+ VA E Sbjct: 151 KTFNDVAGQEEAKENLQEIVDFLNNPAKYKEIGAKMPKGALLVGPPGTGKTLLAKAVAGE 210 Query: 78 LGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEI 114 GV F S SG + G AA + +L + R+ ++FIDEI Sbjct: 211 AGVPFFSISGSEFVEMFVGRGAAKVRDLFKQAREKAPCIVFIDEI 255 >gi|295399332|ref|ZP_06809314.1| AAA ATPase central domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978798|gb|EFG54394.1| AAA ATPase central domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 431 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RPR ++E GQ + K + +L G PG+GKT+LA +A + + Sbjct: 12 MRPRNIDEIVGQQHIIGPHTALYKMIKN--GHVPSLLLYGEPGVGKTSLAHAIAGTVQRD 69 Query: 82 FRSTSGPVIAKAG-----DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 F + + K + A L N+ +LFIDEIHR + ++ L P +E Sbjct: 70 FFAINATASGKKEMEEVVETAKLTGNV----ILFIDEIHRFNKAQQDYLLPHIE 119 >gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP] gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP] Length = 326 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 6/64 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+ L++ GQ LK +++ ++ H+LF GPPG+GKTT A + REL G + Sbjct: 20 RPQRLDDIVGQDHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALCLTRELFGEH 74 Query: 82 FRST 85 +R Sbjct: 75 WRHN 78 >gi|68490447|ref|XP_710951.1| hypothetical protein CaO19.3211 [Candida albicans SC5314] gi|46432214|gb|EAK91709.1| hypothetical protein CaO19.3211 [Candida albicans SC5314] gi|238882781|gb|EEQ46419.1| activator 1 40 kDa subunit [Candida albicans WO-1] Length = 361 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 7/64 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80 RP +LEE GQ E ++ F+E K L H+LF GP G GKT+ +A+E+ Sbjct: 30 RPDSLEEVKGQQEIVDTVRKFVETGK-----LPHLLFYGPSGTGKTSTIIALAKEIYGAT 84 Query: 81 NFRS 84 N+++ Sbjct: 85 NYKN 88 >gi|111115291|ref|YP_709909.1| DNA polymerase III subunits gamma and tau [Borrelia afzelii PKo] gi|110890565|gb|ABH01733.1| DNA polymerase III, subunits gamma and tau [Borrelia afzelii PKo] Length = 566 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 95/228 (41%), Gaps = 27/228 (11%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAK-ARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKIANA-----YIFSGPRGVGKTSSARAFARCLNC- 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IVEEILY-PAMEDF- 132 +GP + G+ + + D DV+ ID S+ I EEI++ PA+ + Sbjct: 66 ---KNGPTVMPCGECSNCKSIESDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYR 122 Query: 133 -----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 ++ ++ +A ++++ + I ATT L ++ R + Sbjct: 123 IYIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSL 181 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 E + ++++ + DEA IA +S G+ R A L +V F Sbjct: 182 EKIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFT 229 >gi|157103169|ref|XP_001647852.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aedes aegypti] gi|108884684|gb|EAT48909.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aedes aegypti] Length = 940 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 693 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 724 >gi|332019575|gb|EGI60054.1| ATPase WRNIP1 [Acromyrmex echinatior] Length = 393 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 13/99 (13%) Query: 57 VLFVGPPGLGKTTLAQVVA---RELG------VNFRSTSGPV--IAKAGDLAALLTNLED 105 ++F GPPG GKT+LA ++A R+L VN + S V I A +A + Sbjct: 34 MIFWGPPGCGKTSLANIIACLSRKLTSNNVHIVNLSAASSGVKSIKDAVTMAKDKSKFGC 93 Query: 106 RDVLFIDEIHRLSIIVEEILYPAME--DFQLDLMVGEGP 142 R ++F+DEIH + + ++I P +E F L E P Sbjct: 94 RTIVFMDEIHCFNKLQQDIFLPHIEIGTFTLIGCTTENP 132 >gi|239623657|ref|ZP_04666688.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521688|gb|EEQ61554.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 439 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 28/136 (20%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGP 62 ADI LL+P+ ++ F GQ EA L V + R + ++L VGP Sbjct: 63 ADIRLLKPKEIKTFLDEYVIGQDEAKKVLSVAVYNHYKRVTSCQNMDVDVQKSNILMVGP 122 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------V 108 G GKT LAQ +A+ L V F + +AG D+ +L L D D + Sbjct: 123 TGSGKTYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQSADYDISRAEYGI 182 Query: 109 LFIDEIHRLSIIVEEI 124 ++IDEI +++ E + Sbjct: 183 IYIDEIDKITKKSENV 198 >gi|149193820|ref|ZP_01870918.1| putative atp-dependent protease la protein [Caminibacter mediatlanticus TB-2] gi|149135773|gb|EDM24251.1| putative atp-dependent protease la protein [Caminibacter mediatlanticus TB-2] Length = 774 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 110/260 (42%), Gaps = 54/260 (20%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFI---EAAKARAEALD--HVLFVGPPGL 65 N ++E+ DI+ L+ R ++ G + + + E AK R E + FVGPPG+ Sbjct: 297 NYAKEEFDINELKERLDKDHYGLKKPKERIIEYFGAKELAKKRGEEFSGATLCFVGPPGV 356 Query: 66 GKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAALLTNLEDRD 107 GKT+LA +A+ L N R+ G A G +A + N + + Sbjct: 357 GKTSLANSIAKALDKNLVRIALGGLEDVNELRGHRRTYIG---AMPGRIAQGIINAKQMN 413 Query: 108 -VLFIDEIHRLS-------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 V+ +DEI ++S ++ E+L P DL + + ++LS+ IA Sbjct: 414 PVIVLDEIDKISRYRGDPTAVLLEVLDPEQNSHFRDLYL-------NFDLDLSKVLFIAT 466 Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLAVTDEAAC 209 + PL+DR + I + Y ++ I +R K + +++TD A Sbjct: 467 ANDPSTIPAPLRDRMEM-IFVGSYTPQEKFEIAKRYLIPQEMKKHSLKKSEISITDAALR 525 Query: 210 EIAMRSRGTPRIAGRLLRRV 229 EI + T R LRR+ Sbjct: 526 EII--DKYTKEAGVRNLRRI 543 >gi|115380280|ref|ZP_01467294.1| ATP-dependent protease La [Stigmatella aurantiaca DW4/3-1] gi|115362709|gb|EAU61930.1| ATP-dependent protease La [Stigmatella aurantiaca DW4/3-1] Length = 684 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 97/230 (42%), Gaps = 52/230 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + VGPPG+GKT+L Q VAR G F R + G V +A G + L R Sbjct: 375 LCLVGPPGVGKTSLGQSVARATGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRFIQSMK 434 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V+ +DEI +L S + E+L P + D + V +LS Sbjct: 435 KSGMKNPVMMLDEIDKLGADFRGDPSAALLEVLDPEQNNTFSDHYL-------DVPFDLS 487 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI-----VQRGAKLTGLA----- 202 + IA ++ + PL+DR I I L Y E+ ++I V + K GL+ Sbjct: 488 KVMFIATANQLDPIPGPLRDRMEI-IELTGYTFEEKQSIARIHLVPKQLKEHGLSTDHID 546 Query: 203 VTDEAACEIAMRSRGTPRIAG--RLLRRVRDFA-----EVAHAKTITREI 245 VTDEA + + R AG L RR+ D EVA KT + I Sbjct: 547 VTDEALLTL---TTSYTREAGVRNLERRIADLCRAVAVEVAGGKTEKQTI 593 >gi|307206357|gb|EFN84409.1| Nuclear valosin-containing protein-like [Harpegnathos saltator] Length = 861 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 604 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 635 >gi|26988176|ref|NP_743601.1| ATP-dependent protease La [Pseudomonas putida KT2440] gi|24982911|gb|AAN67065.1|AE016335_5 ATP-dependent protease La [Pseudomonas putida KT2440] Length = 805 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 50/189 (26%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ TI +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKMTIAKRHLWPKQLEKAGVSK 554 Query: 199 TGLAVTDEA 207 T L+++D A Sbjct: 555 TSLSISDSA 563 >gi|118347942|ref|XP_001007447.1| AAA family ATPase, CDC48 subfamily protein [Tetrahymena thermophila] gi|89289214|gb|EAR87202.1| AAA family ATPase, CDC48 subfamily protein [Tetrahymena thermophila SB210] Length = 839 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ A + + D+ V Sbjct: 549 VLFYGPPGCGKTLLAKAVANECSANFISIKGPELLTMWFGESEANVREVFDKARAAAPCV 608 Query: 109 LFIDEIHRLSI 119 LF DE+ +++ Sbjct: 609 LFFDELDSVAV 619 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108 VL GPPG GKT +A+ VA E G F +GP I G+L E + Sbjct: 276 VLLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGEAEGNLRKAFEEAEKNSPAI 335 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 336 IFIDELDSIA 345 >gi|161527613|ref|YP_001581439.1| ATPase AAA [Nitrosopumilus maritimus SCM1] gi|160338914|gb|ABX12001.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1] Length = 722 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 8/81 (9%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD 107 EA VL GPPG GKT LA+ VA E +F S SGP I G+ A L + E R+ Sbjct: 209 EAPKGVLLYGPPGTGKTLLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEARE 268 Query: 108 ----VLFIDEIHRLSIIVEEI 124 ++F+DEI ++ EE+ Sbjct: 269 KAPSIIFVDEIDSIAPKREEV 289 >gi|42559517|sp|Q975D4|RFCL_SULTO RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit Length = 440 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 RP+TL E + +A L +IE+ VL GPPG+GKTTLA+ +AR+ Sbjct: 10 RPKTLNEVENEEDAKKELVEWIESWLKGKPNYKAVLLYGPPGVGKTTLAEALARD 64 >gi|325972845|ref|YP_004249036.1| DNA polymerase III subunits gamma and tau [Spirochaeta sp. Buddy] gi|324028083|gb|ADY14842.1| DNA polymerase III, subunits gamma and tau [Spirochaeta sp. Buddy] Length = 543 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 31/253 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+ + GQ S +K IE + + H LF GP G+GKT+ A+++AR L Sbjct: 11 RPQIFDNLVGQEFVVSTIKHAIEQGR-----IAHAYLFSGPRGVGKTSSARILARALNCE 65 Query: 82 FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQL 134 GP G + +T + DV+ ID S+ I +E+L+P Sbjct: 66 ----QGPTATPCGVCSNCKEITQGNNVDVIEIDGASNTSVNDIRQIKDEVLFPPQASKYK 121 Query: 135 DLMVGE----GPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 ++ E SA ++++ + I ATT + + ++ R ++ Sbjct: 122 IYIIDEVHMLSTSAFNALLKTIEEPPAYIIFIFATTELQKVPATIRSRCQ-QFHFQLIDL 180 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 + +K+ + AK +A ++A IA S G+ R A L +V F++ H IT E Sbjct: 181 DLIKSCLSEAAKEMEVAADEDALFWIAKESTGSMRDAYTLFDQVVSFSQ-GH---ITMEK 236 Query: 246 ADAALLRLAIDKM 258 + L + ID++ Sbjct: 237 ISSKLGLVGIDQI 249 >gi|300870618|ref|YP_003785489.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli 95/1000] gi|300688317|gb|ADK30988.1| DNA polymerase III, subunits gamma and tau [Brachyspira pilosicoli 95/1000] Length = 521 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 101/245 (41%), Gaps = 45/245 (18%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T EE GQ + I A K A A LF G G+GKT+LA+++A+ L Sbjct: 13 RPQTFEEVIGQEHITKTISKSI-AQKKIAHAY---LFSGAHGVGKTSLARIIAKALNC-- 66 Query: 83 RSTSGPVIAKAGDLAALLTNLED---RDVLFID--------------EIHRLS------- 118 +GP G + T +E+ DV+ ID E R+S Sbjct: 67 --VNGPTDKPCG-VCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYK 123 Query: 119 -IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 I++E+ E F L E P A V I ATT + ++ R Sbjct: 124 VYIIDEVHQITNEAFNALLKTLEEPPAHVV--------FILATTEADRVLPTIRSRCQQY 175 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 I IEDL+ I++ +A DEA IA ++RG+ R + +L ++ A A Sbjct: 176 I-FKSLGIEDLEKILKGILDKENIAYDDEAIFLIAKQARGSVRDSETILEKM--IAYTAD 232 Query: 238 AKTIT 242 K IT Sbjct: 233 KKHIT 237 >gi|182625717|ref|ZP_02953486.1| ATPase, AAA family [Clostridium perfringens D str. JGS1721] gi|177909119|gb|EDT71594.1| ATPase, AAA family [Clostridium perfringens D str. JGS1721] Length = 418 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 ++RP+ LE+ GQ V + L I + + + + +F GPPG+GKTTLA +++ Sbjct: 10 IMRPKKLEDIVGQKHIVGEGTPLNKLI-----KNKNIMNCIFYGPPGVGKTTLANIISNY 64 Query: 78 LGVNFRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + I + + + + NL + +L+IDE+ + ++ L +ED + Sbjct: 65 TDKKFYKINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGR 124 Query: 134 LDLMVG--EGPSARSVKINLSRFTLIAATT 161 + L+ E P K LSR T+ T Sbjct: 125 VILIASTTENPYFAIHKAILSRSTIFQFKT 154 >gi|150403099|ref|YP_001330393.1| AAA family ATPase [Methanococcus maripaludis C7] gi|150034129|gb|ABR66242.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C7] Length = 800 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 16/105 (15%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ +E E + VL GPPG GKT LA+ VA E Sbjct: 175 TYEDIGGLKEEVKKIREMVELPMRHPELFEKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234 Query: 78 LGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEI 114 G NF + +GP V +L + E+ ++FIDEI Sbjct: 235 AGANFYTINGPELMSKYVGETEENLRKIFEEAEENSPSIIFIDEI 279 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E NF S GP I Sbjct: 560 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEI 593 >gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2] gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2] gi|42559539|sp|Q9UXF5|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit; AltName: Full=SsoRFC small subunit gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus solfataricus P2] gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus solfataricus P2] gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2] Length = 330 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 6/61 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+TL++ Q E LK F+ + + + H+LF GPPG GKTT A + +L G N Sbjct: 15 RPKTLDDIVNQREIIDRLKKFV-----KEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69 Query: 82 F 82 + Sbjct: 70 Y 70 >gi|167761298|ref|ZP_02433425.1| hypothetical protein CLOSCI_03703 [Clostridium scindens ATCC 35704] gi|167660964|gb|EDS05094.1| hypothetical protein CLOSCI_03703 [Clostridium scindens ATCC 35704] Length = 419 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 28/130 (21%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGP 62 ADI+LL+P ++EF GQ EA L V + R A ++L +GP Sbjct: 61 ADINLLKPEEIKEFLDEYVIGQEEAKKVLSVAVYNHYKRIMAQKDMGVELNKSNILMLGP 120 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------V 108 G GKT LAQ +A+ L V F + +AG + + N+ D D + Sbjct: 121 TGCGKTLLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEYGI 180 Query: 109 LFIDEIHRLS 118 ++IDEI +++ Sbjct: 181 IYIDEIDKIT 190 >gi|307353811|ref|YP_003894862.1| AAA family ATPase [Methanoplanus petrolearius DSM 11571] gi|307157044|gb|ADN36424.1| AAA family ATPase, CDC48 subfamily [Methanoplanus petrolearius DSM 11571] Length = 831 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 8/75 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108 VL GPPG GKT +A+ VA E+ NF + SGP I G L + E+ + Sbjct: 219 VLLYGPPGTGKTLIAKAVANEVDANFITLSGPEIMSKYYGESEGKLREVFEQAEENAPTI 278 Query: 109 LFIDEIHRLSIIVEE 123 +FIDEI ++ EE Sbjct: 279 IFIDEIDSIAPKREE 293 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA + VNF S GP +++K G+ + N+ R + Sbjct: 525 ILLFGPPGTGKTLLAKAVANKSEVNFISVKGPELLSKWVGESEKGIRNIFRRARQAAPSI 584 Query: 109 LFIDEIHRL 117 +F DEI L Sbjct: 585 IFFDEIDAL 593 >gi|304437862|ref|ZP_07397810.1| lon family ATP-dependent protease [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369162|gb|EFM22839.1| lon family ATP-dependent protease [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 718 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 8/79 (10%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV---A 75 + LLRP+T +E GQ A +L AK + H+L GPPG+GKTT A++V A Sbjct: 170 MELLRPKTFDEIVGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTTAARLVLEAA 224 Query: 76 RELGVNFRSTSGPVIAKAG 94 ++ V+ + + P + G Sbjct: 225 KKRAVSPFAETAPFVETDG 243 >gi|118577136|ref|YP_876879.1| AAA ATPase [Cenarchaeum symbiosum A] gi|118195657|gb|ABK78575.1| AAA ATPase [Cenarchaeum symbiosum A] Length = 728 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 8/81 (9%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD 107 EA VL GPPG GKT LA+ VA E +F S SGP I G+ A L + E R+ Sbjct: 209 EAPKGVLLYGPPGTGKTLLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEARE 268 Query: 108 ----VLFIDEIHRLSIIVEEI 124 ++F+DEI ++ EE+ Sbjct: 269 KAPSIIFVDEIDSIAPKREEV 289 >gi|13541778|ref|NP_111466.1| ATPase of the AAA+ class involved in cell division [Thermoplasma volcanium GSS1] gi|14325192|dbj|BAB60117.1| cell cycle control protein 48 [Thermoplasma volcanium GSS1] Length = 745 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108 V+ GPPG GKT +A+ VA E G NF S +GP I L + + E+ + Sbjct: 227 VILYGPPGTGKTLIARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSI 286 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 287 IFIDEIDSIAPKREEV 302 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 21/33 (63%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 L GPPG+GKT LA+ VA E NF S GP + Sbjct: 505 LLYGPPGVGKTLLAKAVATESNANFISIKGPEV 537 >gi|301118150|ref|XP_002906803.1| ATPase [Phytophthora infestans T30-4] gi|262108152|gb|EEY66204.1| ATPase [Phytophthora infestans T30-4] Length = 581 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 45/222 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAK-AGD----LAALLTNLEDRD--V 108 VLF GPPG GKT A+++A++ G+ V++K GD ++A+ E D + Sbjct: 362 VLFEGPPGTGKTLSARIIAQQAGIPMIHIPIESVVSKWYGDSEKKMSAIFDACEKLDGAI 421 Query: 109 LFIDEI------------HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156 +FIDEI H S + +L +E F + + T+ Sbjct: 422 IFIDEIDALAGDRSGGTMHEASRRILSVLLQKVEGF----------------ASAKKTTV 465 Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216 + AT R L L RF + IR N + + + + R AK ++DE ++A S Sbjct: 466 VCATNRKQDLDAALISRFDLSIRYNLPDEKTRRAVFGRYAK----QLSDEELSQLAAVS- 520 Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITR--EIADAALLRLAID 256 +++ R ++ + ++AE A + + E A+ LR ++ Sbjct: 521 --SQLSCRDIKEICEYAERKWASKVLKKEETAELPTLRTYME 560 >gi|297473582|ref|XP_002686698.1| PREDICTED: peroxisomal biogenesis factor 1 [Bos taurus] gi|296488689|gb|DAA30802.1| peroxisomal biogenesis factor 1 [Bos taurus] Length = 1254 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA V+ARE G+NF S GP Sbjct: 876 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 907 >gi|288817487|ref|YP_003431834.1| ATP-dependent protease La [Hydrogenobacter thermophilus TK-6] gi|288786886|dbj|BAI68633.1| ATP-dependent protease La [Hydrogenobacter thermophilus TK-6] gi|308751094|gb|ADO44577.1| ATP-dependent protease La [Hydrogenobacter thermophilus TK-6] Length = 792 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 45/210 (21%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAK 92 K + A+ + FVGPPG+GKT+L + +A LG F S V A Sbjct: 357 KGKKSAVQILCFVGPPGVGKTSLGKSIAESLGRKFVRISLGGIRDEAEIRGHRRTYVGAM 416 Query: 93 AGDLAALLTNLEDRDVLFI-DEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPS 143 G + + ++ L + DE+ ++SI + E+L P +DL +G Sbjct: 417 PGRIIQAIKQAGTKNPLIVLDEVDKISISFQGDPAAALLEVLDPEQNKNFVDLYIG---- 472 Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--------- 194 + +LS I R+ + PL DR + I L Y E+ I + Sbjct: 473 ---MPFDLSDVFFICTANRIDTIPRPLLDRMEV-ISLAGYSEEEKVFIAKNHLLPKLLPL 528 Query: 195 -GAKLTGLAVTDEAACEIAMRSRGTPRIAG 223 G K +A++D+A E+ RG R +G Sbjct: 529 HGFKDDEVALSDDAILEVI---RGYTRESG 555 >gi|124361200|gb|ABN09172.1| hypothetical protein MtrDRAFT_AC183371g22v1 [Medicago truncatula] Length = 92 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 21/34 (61%), Positives = 25/34 (73%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT+LAQ+ A + GVNF S +GP I Sbjct: 16 VLLHGPPGTGKTSLAQLCAHDAGVNFFSINGPEI 49 >gi|4098493|gb|AAD00283.1| hypothetical protein [Streptococcus mutans] Length = 237 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 16/97 (16%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV--------IAKAGDLAALLTN 102 A L ++ GPPG+GKT++A +A FR+ + IA+ + L Sbjct: 4 ANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRLQEIAEEAKFSGGL-- 61 Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 VL +DEIHRL ++ L P +E+ Q+ +M+G Sbjct: 62 -----VLLLDEIHRLDKTKQDFLLPLLENGQI-IMIG 92 >gi|51894450|ref|YP_077141.1| Lon-like ATP-dependent protease [Symbiobacterium thermophilum IAM 14863] gi|51858139|dbj|BAD42297.1| Lon-like ATP-dependent protease [Symbiobacterium thermophilum IAM 14863] Length = 659 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 5/54 (9%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 LLRPR LEE GQ A L AK + HV+ GPPG+GKTT+A++V Sbjct: 182 LLRPRALEEVVGQDRAIQAL-----LAKVASPFPQHVILYGPPGVGKTTVARLV 230 >gi|297820436|ref|XP_002878101.1| CIP111 [Arabidopsis lyrata subsp. lyrata] gi|297323939|gb|EFH54360.1| CIP111 [Arabidopsis lyrata subsp. lyrata] Length = 1025 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/34 (61%), Positives = 25/34 (73%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT+LA+ AR+ GVNF S +GP I Sbjct: 424 VLIYGPPGTGKTSLARSFARDSGVNFFSVNGPEI 457 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 16/111 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77 E+ GQ E + L +E + +A + L GPPG KT +A+ VA E Sbjct: 725 NWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASE 784 Query: 78 LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSII 120 +NF + GP + G+ + +L + ++F DEI L+ I Sbjct: 785 AKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASI 835 >gi|118353063|ref|XP_001009802.1| ATPase, AAA family protein [Tetrahymena thermophila] gi|89291569|gb|EAR89557.1| ATPase, AAA family protein [Tetrahymena thermophila SB210] Length = 1060 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 21/34 (61%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ A ELG+NF S GP I Sbjct: 811 VLLYGPPGCGKTYLAKATANELGLNFFSVKGPEI 844 >gi|326784524|ref|YP_004324985.1| clamp loader subunit [Prochlorococcus phage P-SSM7] gi|310004557|gb|ADO98949.1| clamp loader subunit [Prochlorococcus phage P-SSM7] Length = 332 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T+E+ + S K F++ + + ++L G G+GKTT+A+ + ELGV+ Sbjct: 30 RPKTIEDCILPTDVKSTFKGFVDQGE-----IPNLLLSGTAGVGKTTIAKALCNELGVDS 84 Query: 83 RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +G V +A AA LT+ VL IDE + V+ +L ++E+F Sbjct: 85 YVINGSDEGRFLDTVRNQAKSFAATVSLTSTSRHKVLIIDEADNTTADVQLLLRASIEEF 144 Query: 133 Q 133 Q Sbjct: 145 Q 145 >gi|269836546|ref|YP_003318774.1| ATP-dependent protease La [Sphaerobacter thermophilus DSM 20745] gi|269785809|gb|ACZ37952.1| ATP-dependent protease La [Sphaerobacter thermophilus DSM 20745] Length = 837 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 96/231 (41%), Gaps = 67/231 (29%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+LAQ +AR LG F R + G V +A G + + Sbjct: 381 LCFVGPPGVGKTSLAQSIARALGRRFTRMSLGGVRDEAEIRGHRRTYIGAMPGRIIQAIR 440 Query: 102 NLEDRDVLFI-DEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 D +F+ DEI +L S + E+L P + D LD V Sbjct: 441 RAGTNDPVFVLDEIDKLGADWRGDPSSALLEVLDPEQNHSFRDHYLD-----------VP 489 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGL-- 201 +LS+ IA + + PL+DR I ++L+ Y E+ K +V + K L Sbjct: 490 FDLSKVMFIATANMLDTIPAPLRDRMEI-LQLSGYTDEEKLNIARKYLVPKQLKRHALSP 548 Query: 202 ---AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 +++DEA EI ++ + A + + REIA A Sbjct: 549 DEVSISDEALLEI-----------------IQHYTREAGVRNLEREIASVA 582 >gi|164659980|ref|XP_001731114.1| hypothetical protein MGL_2113 [Malassezia globosa CBS 7966] gi|159105012|gb|EDP43900.1| hypothetical protein MGL_2113 [Malassezia globosa CBS 7966] Length = 737 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VLF GPPG GKT +A +A ELGV F S S P I +G+ L + D + Sbjct: 131 VLFHGPPGCGKTMMAGALAGELGVPFLSVSAPSIVSGTSGESEKALRDTFDEAKSIAPCI 190 Query: 109 LFIDEI 114 LF+DEI Sbjct: 191 LFVDEI 196 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 478 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 509 >gi|148549484|ref|YP_001269586.1| ATP-dependent protease La [Pseudomonas putida F1] gi|148513542|gb|ABQ80402.1| ATP-dependent protease La [Pseudomonas putida F1] Length = 805 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 50/189 (26%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ TI +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKMTIAKRHLWPKQLEKAGVSK 554 Query: 199 TGLAVTDEA 207 T L+++D A Sbjct: 555 TSLSISDSA 563 >gi|71654128|ref|XP_815689.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL Brener] gi|70880763|gb|EAN93838.1| replication factor C, subunit 2, putative [Trypanosoma cruzi] Length = 347 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL E Q EA L+ ++++ + + H LF GPPG GKTT VAREL Sbjct: 26 RPMTLSEVKSQEEAVCALRASLQSSAS----MPHFLFHGPPGTGKTTAILAVAREL 77 >gi|312381272|gb|EFR27057.1| hypothetical protein AND_06456 [Anopheles darlingi] Length = 848 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 800 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 831 >gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM 12940] gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940] Length = 326 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP+TLE+ G L ++ L H+LF GP G+GKTT A +AREL Sbjct: 16 IEKYRPQTLEDIAGHEAIVERLGSYVSRND-----LSHMLFAGPAGVGKTTAATAIAREL 70 >gi|224532078|ref|ZP_03672710.1| DNA polymerase III, subunits gamma and tau [Borrelia valaisiana VS116] gi|224511543|gb|EEF81949.1| DNA polymerase III, subunits gamma and tau [Borrelia valaisiana VS116] Length = 560 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 25/227 (11%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --KNGPTVMPCGECNNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ + I ATT L ++ R +E Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 + ++++ + DEA IA +S G+ R A L +V F Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFT 229 >gi|156355133|ref|XP_001623528.1| predicted protein [Nematostella vectensis] gi|156210238|gb|EDO31428.1| predicted protein [Nematostella vectensis] Length = 284 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 35/67 (52%), Gaps = 9/67 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL-------EDRD 107 VL GPPG GKT LAQ VA E+ F S S + + G+ L+ L E R Sbjct: 19 VLLYGPPGTGKTRLAQAVASEVNSTFYSVSSADLISSWVGESEKLIRELFHDARKREGRS 78 Query: 108 VLFIDEI 114 V+FIDEI Sbjct: 79 VIFIDEI 85 >gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities AAA [uncultured archaeon MedDCM-OCT-S05-C724] Length = 321 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP L E GQ + LK ++ + ++ H+LF GP G+GKTT A +ARE+ Sbjct: 6 IEKYRPNNLSEVVGQEAVTTRLKNYV-----KESSMPHLLFAGPAGIGKTTSALALAREM 60 >gi|73975780|ref|XP_860512.1| PREDICTED: similar to peroxisome biogenesis factor 1 isoform 2 [Canis familiaris] Length = 1210 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA V+ARE G+NF S GP Sbjct: 804 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 835 >gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7] gi|42559516|sp|Q975D3|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|15621473|dbj|BAB65468.1| 327aa long hypothetical replication factor C small subunit [Sulfolobus tokodaii str. 7] Length = 327 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPR+L++ Q + LK F+ + + + H+LF GPPG GKTT A + +L G N Sbjct: 14 RPRSLDDIVNQKDIVERLKRFV-----KDKNMPHLLFSGPPGTGKTTAALALVHDLYGDN 68 Query: 82 FRS 84 +R Sbjct: 69 YRQ 71 >gi|57095978|ref|XP_532459.1| PREDICTED: similar to peroxisome biogenesis factor 1 isoform 1 [Canis familiaris] Length = 1267 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA V+ARE G+NF S GP Sbjct: 861 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 892 >gi|16081896|ref|NP_394300.1| VAT ATPase (VCP-like ATPase) [Thermoplasma acidophilum DSM 1728] gi|11387127|sp|O05209|VAT_THEAC RecName: Full=VCP-like ATPase gi|1916752|gb|AAC45089.1| VCP-like ATPase [Thermoplasma acidophilum] gi|10640117|emb|CAC11969.1| VAT ATPase (VCP-like ATPase) [Thermoplasma acidophilum] Length = 745 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108 V+ GPPG GKT +A+ VA E G NF S +GP I L + + E+ + Sbjct: 227 VILYGPPGTGKTLIARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSI 286 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 287 IFIDEIDSIAPKREEV 302 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 21/33 (63%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 L GPPG+GKT LA+ VA E NF S GP + Sbjct: 505 LLYGPPGVGKTLLAKAVATESNANFISIKGPEV 537 >gi|322823330|gb|EFZ29106.1| replication factor C, subunit 2, putative [Trypanosoma cruzi] Length = 347 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL E Q EA L+ ++++ + + H LF GPPG GKTT VAREL Sbjct: 26 RPMTLSEVKSQEEAVCALRASLQSSAS----MPHFLFHGPPGTGKTTAILAVAREL 77 >gi|303246049|ref|ZP_07332330.1| Adenosinetriphosphatase [Desulfovibrio fructosovorans JJ] gi|302492445|gb|EFL52316.1| Adenosinetriphosphatase [Desulfovibrio fructosovorans JJ] Length = 503 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E G F S SGP + G+ L NL D V Sbjct: 258 VLLYGPPGCGKTLLARAVAHESGARFFSVSGPELITKWHGESEENLRNLFDEAQKSQPAV 317 Query: 109 LFIDEI 114 +F DEI Sbjct: 318 VFFDEI 323 >gi|296413658|ref|XP_002836526.1| hypothetical protein [Tuber melanosporum Mel28] gi|295630353|emb|CAZ80717.1| unnamed protein product [Tuber melanosporum] Length = 703 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 16/105 (15%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 L+ G+ E ++L FI A E H VL GPPG GKT LA +ARE Sbjct: 156 CLKNIGGREEVINDLLEFIAMPLAHPEVNLHTGVQPPCGVLLHGPPGCGKTMLANAIARE 215 Query: 78 LGVNFRSTSGPVIAK--AGDLAALLTNL--EDRDV----LFIDEI 114 +G+ F + S P I +G+ +L L E R + +F+DEI Sbjct: 216 VGLPFIAISAPSIVSGVSGEPEKMLRELFEEARGIAPCLMFMDEI 260 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G N S GP Sbjct: 473 VLLWGPPGCGKTLLAKAIANESGANLISIRGP 504 >gi|194209614|ref|XP_001493415.2| PREDICTED: peroxisome biogenesis factor 1 [Equus caballus] Length = 1283 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA V+ARE G+NF S GP Sbjct: 877 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 908 >gi|322497912|emb|CBZ32987.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 877 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ +NF S GP Sbjct: 602 VLFYGPPGCGKTLLAKAVATEMSMNFISVKGP 633 >gi|322489921|emb|CBZ25181.1| putative peroxisome assembly protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 959 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ +NF S GP Sbjct: 684 VLFYGPPGCGKTLLAKAVATEMSMNFISVKGP 715 >gi|302343350|ref|YP_003807879.1| ATPase AAA [Desulfarculus baarsii DSM 2075] gi|301639963|gb|ADK85285.1| AAA ATPase central domain protein [Desulfarculus baarsii DSM 2075] Length = 452 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 18/147 (12%) Query: 9 SRNVSQEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 S NVS A ++ +RPR ++E GQ + L+ +E + + ++ GPPG Sbjct: 8 SGNVSSGVAPLAERMRPRAIDEIVGQNHLLGPGKALRRLLEEGRPIS-----LILWGPPG 62 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLS 118 GKTTLA+++A+ +F S V++ D+ + R LF+DEIHR + Sbjct: 63 TGKTTLARLLAQLWDTDFTEFSA-VLSGVADVRRAVEEARAKLKGGRRTTLFVDEIHRFN 121 Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPS 143 ++ P +E + L+ E PS Sbjct: 122 KSQQDAFLPHVESGVITLVGATTENPS 148 >gi|253744345|gb|EET00566.1| ATPase, AAA family [Giardia intestinalis ATCC 50581] Length = 415 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 17/144 (11%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVAREL 78 LRP T++E G S + +++A L ++ GPPG GKT+LA++ A+ Sbjct: 7 LRPNTIDEIVGNRHILSLTDGIVGRIYEQSQASHILQSIIITGPPGTGKTSLARLYAKSF 66 Query: 79 G-----VNFRSTSGPVIA-------KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 + F+S V A D A L N LF+DE HR + ++ L Sbjct: 67 DPSYKLIEFKSGQATVAELNKVIERVAADRAGGLINA--HVCLFVDEAHRCTKTQQDRLL 124 Query: 127 PAMEDFQLDLMVGEGPSARSVKIN 150 A+ED + L++ S + I+ Sbjct: 125 SAVEDGTVTLILATTASPYTAIID 148 >gi|301791878|ref|XP_002930906.1| PREDICTED: peroxisome biogenesis factor 1-like [Ailuropoda melanoleuca] Length = 1269 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA V+ARE G+NF S GP Sbjct: 863 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 894 >gi|218133241|ref|ZP_03462045.1| hypothetical protein BACPEC_01106 [Bacteroides pectinophilus ATCC 43243] gi|217992114|gb|EEC58118.1| hypothetical protein BACPEC_01106 [Bacteroides pectinophilus ATCC 43243] Length = 422 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 29/138 (21%) Query: 16 DADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR----AEALD------HVLFV 60 D +I+LL+P ++EF GQ EA L V + R AE D ++L + Sbjct: 61 DMEINLLKPMEIKEFLDEYVIGQEEAKKVLSVAVYNHYKRIMRKAEDDDVELQKSNILVI 120 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV----- 108 GP G GKT LAQ +A+ L V F + +AG D+ +L L D DV Sbjct: 121 GPTGCGKTYLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADGDVERAQY 180 Query: 109 --LFIDEIHRLSIIVEEI 124 ++IDEI +++ E + Sbjct: 181 GIIYIDEIDKITKKSENV 198 >gi|89901777|ref|YP_524248.1| ATP-dependent protease La [Rhodoferax ferrireducens T118] gi|89346514|gb|ABD70717.1| ATP-dependent protease La [Rhodoferax ferrireducens T118] Length = 797 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 59/223 (26%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+L Q +AR LG F R + G V +A G++ L Sbjct: 371 LCLVGPPGVGKTSLGQSIARALGRKFVRVSLGGVHDEAEIRGHRRTYVGALPGNIIQALK 430 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R V+ +DEI +L S + E+L P + D + +V +LS Sbjct: 431 KAGTRGCVMMLDEIDKLGSGIQGDPSAALLEVLDPEQNNSFRDNYL-------AVPYDLS 483 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202 + I + + PL+DR + + L Y E+ + I +R G K LA Sbjct: 484 QVLFITTANVLDPVPGPLRDRMEV-LHLAGYTQEEKREIARRYLVTRQLEDSGLKPEQLA 542 Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +TD+A I +RD+ A + + R+I Sbjct: 543 ITDDALAAI-----------------IRDYTREAGVRNLERQI 568 >gi|325836748|ref|ZP_08166215.1| ATPase, AAA family [Turicibacter sp. HGF1] gi|325491126|gb|EGC93415.1| ATPase, AAA family [Turicibacter sp. HGF1] Length = 421 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 16/147 (10%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV---LFVGPPGLGKTTLAQVVARE 77 L+RPRTL+E GQ ++ + A++H+ +F GP G GKTT+A ++A Sbjct: 8 LIRPRTLDEVVGQQHLIGEGQIL-----RKLIAVNHIPNLIFYGPSGTGKTTIANIIASL 62 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDF 132 + AK D+ ++++L + L++DEI + ++ L +E Sbjct: 63 SNKKIYKLNA-TDAKTEDIKQIISSLNTLEGMNGIFLYLDEIQNFNKKQQQTLLKYIETG 121 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLI 157 Q+ L+ E P LSR T++ Sbjct: 122 QITLITSTTENPYFTIFSAILSRSTIL 148 >gi|291520782|emb|CBK79075.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprococcus catus GD/7] Length = 432 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 28/139 (20%) Query: 14 QEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLF 59 Q DAD +LL+P ++ F GQ +A L V + R + +++ Sbjct: 54 QNDADFNLLKPVEIKNFLDQYVIGQEQAKKVLSVAVYNHYKRIASNAGNDVELQKSNIIM 113 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------ED 105 VGP G GKT LAQ +A+ L V F + +AG D+ +L L + Sbjct: 114 VGPTGSGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIEKAE 173 Query: 106 RDVLFIDEIHRLSIIVEEI 124 R +++IDEI +++ E + Sbjct: 174 RGIIYIDEIDKITKKSENV 192 >gi|281353480|gb|EFB29064.1| hypothetical protein PANDA_021538 [Ailuropoda melanoleuca] Length = 1268 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA V+ARE G+NF S GP Sbjct: 862 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 893 >gi|317495276|ref|ZP_07953646.1| ATP-dependent protease [Gemella moribillum M424] gi|316914698|gb|EFV36174.1| ATP-dependent protease [Gemella moribillum M424] Length = 766 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 49/228 (21%) Query: 43 FIEAAKARAEALDHVLFV-GPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA------- 93 F+ K R + +L + GPPG+GK++LA+ +AR +G +F R + G V +A Sbjct: 330 FLAVKKLRDDMKSPILCLSGPPGVGKSSLAKSIARSMGRSFVRISLGGVRDEAEIRGHRR 389 Query: 94 -------GDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137 G + L ++ ++ V+ +DEI +++ ++ E++ PA + +D Sbjct: 390 TYLGALPGKIIQSLKKIKTKNPVILLDEIDKMASDIKGDPASAMLEVIDPAQNNEFVDHY 449 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIV 192 + + +LS+ IA + L+ PL+DR + I L Y +++ +K ++ Sbjct: 450 L-------DIPFDLSKVLFIATANNLSLIPAPLRDRMEV-IELESYTVKEKENIAIKYLI 501 Query: 193 QRGAKLTGLAVTDEAACEIAMRS-----------RGTPRIAGRLLRRV 229 R K GL + + A+ R R+ G + R+V Sbjct: 502 PRQIKENGLKKEQISFTKQAINKVINGYTYEAGVRNLERVLGSICRKV 549 >gi|229496591|ref|ZP_04390305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas endodontalis ATCC 35406] gi|229316488|gb|EEN82407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas endodontalis ATCC 35406] Length = 420 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +++ VGP G GKT LAQ +AR L V F V+ +AG D+ ++LT L Sbjct: 123 NIIMVGPTGTGKTLLAQTIARMLDVPFAIADATVLTEAGYVGEDIESILTRLLQSCNYDE 182 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 183 RAAERGIVFIDEIDKIA 199 >gi|149204649|ref|ZP_01881614.1| ATP-dependent Zn protease [Roseovarius sp. TM1035] gi|149141908|gb|EDM29958.1| ATP-dependent Zn protease [Roseovarius sp. TM1035] Length = 742 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 10/122 (8%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEF-TGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 DR +++ ++Q D++L L E T ++L + A A AE + G Sbjct: 297 DRLAEIAQKMTQGQPDLTLDAVHGLGEVRTYLSRMLNDLNAWRTGALAWAEVTSSAVLYG 356 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFID 112 PPG GKTTLA A G+ STS K G +L L+D VLFID Sbjct: 357 PPGTGKTTLANAFAGSAGIPIISTSYADCQKHGHQGDMLRALDDAFATAKEAAPAVLFID 416 Query: 113 EI 114 E+ Sbjct: 417 EL 418 >gi|218884001|ref|YP_002428383.1| replication factor C large subunit [Desulfurococcus kamchatkensis 1221n] gi|218765617|gb|ACL11016.1| replication factor C large subunit [Desulfurococcus kamchatkensis 1221n] Length = 426 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 27/209 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+TL+E Q EA S L ++ + + + L GPPG GKT+L + +AR G Sbjct: 13 RPKTLDEVVNQDEAKSKLLEWLSSWEKGKPSKKAALLHGPPGCGKTSLVEALARSKGYQL 72 Query: 83 ---------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 R I K + LT R ++ +DE+ + + + A+ + Sbjct: 73 LEMNASDARRKEDIERIVKLASRSGALTG--SRKIILLDEVDGMDVRADAGGVEALVEV- 129 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 + V P ++ A + PL++ I D+ T+++ Sbjct: 130 --IKVSANP------------IIMTANNPYSQMLRPLRE-LSEMIAFKRLTPRDVVTVLK 174 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 R L D+A EIA RS G R A Sbjct: 175 RICSAEKLVCEDQALDEIAKRSEGDLRSA 203 >gi|297619992|ref|YP_003708097.1| AAA family ATPase [Methanococcus voltae A3] gi|297378969|gb|ADI37124.1| AAA family ATPase, CDC48 subfamily [Methanococcus voltae A3] Length = 781 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 16/105 (15%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 + E+ G E ++ +E E D VL GPPG GKT LA+ VA E Sbjct: 175 SYEDIGGLREEVKKIREMVELPMRHPELFDRLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234 Query: 78 LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEI 114 G N+ + +GP I +L + E+ V+FIDEI Sbjct: 235 SGANYYTINGPEIMSKYVGETEENLRKIFEEAEENAPSVIFIDEI 279 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 20/34 (58%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L G PG GKT LA+ VA E NF S GP I Sbjct: 550 ILLYGAPGTGKTLLAKAVANESEANFISVKGPEI 583 >gi|146082384|ref|XP_001464496.1| peroxisome assembly protein [Leishmania infantum JPCM5] Length = 507 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ +NF S GP Sbjct: 232 VLFYGPPGCGKTLLAKAVATEMSMNFISVKGP 263 >gi|332795777|ref|YP_004457277.1| AAA ATPase central domain-containing protein [Acidianus hospitalis W1] gi|332693512|gb|AEE92979.1| AAA ATPase central domain protein [Acidianus hospitalis W1] Length = 540 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 8/82 (9%) Query: 46 AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAKA-GDLAALLTNL 103 A +A+ V+ GPPG GKT+L++ +A +LG N F+ + +++K G+ LLT+ Sbjct: 41 AEEAKKGKTYGVILFGPPGTGKTSLSKAIANKLGWNFFQLNASDILSKWYGESEILLTSF 100 Query: 104 EDR------DVLFIDEIHRLSI 119 D+ VLFIDEI ++ Sbjct: 101 LDKVESNQPAVLFIDEIDSFTM 122 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 9/70 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA----KAGDLAALLTNLEDRD----V 108 +L GPPG GKT++A+ +A EL +F SG IA +A ++ A N+ RD V Sbjct: 319 ILLYGPPGTGKTSIAKAMANELKASFIILSGEEIASAQIRAPEVIAEKFNIA-RDNSPAV 377 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 378 IFIDEIDMIA 387 >gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A] gi|42559497|sp|Q8TSX5|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans C2A] Length = 338 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 + L+ + +E+ I RP L + GQ E LK ++ L H+LF GPPG Sbjct: 2 QALMEDSKIKEEIWIEKYRPVRLNQVAGQDETIERLKSYVATKN-----LPHLLFSGPPG 56 Query: 65 LGKTTLAQVVAREL 78 +GKT A +ARE+ Sbjct: 57 VGKTASAVSIAREI 70 >gi|321399234|emb|CAM66885.2| putative peroxisome assembly protein [Leishmania infantum JPCM5] Length = 877 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ +NF S GP Sbjct: 602 VLFYGPPGCGKTLLAKAVATEMSMNFISVKGP 633 >gi|221218167|ref|ZP_03589633.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 72a] gi|225549648|ref|ZP_03770614.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 118a] gi|221192115|gb|EEE18336.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 72a] gi|225369925|gb|EEG99372.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 118a] Length = 560 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 25/228 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ + I ATT L ++ R ++ Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 + ++++ + DEA IA +S G+ R A L ++ F++ Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFSD 230 >gi|89891553|ref|ZP_01203058.1| DNA polymerase III gamma/tau subunit [Flavobacteria bacterium BBFL7] gi|89516327|gb|EAS18989.1| DNA polymerase III gamma/tau subunit [Flavobacteria bacterium BBFL7] Length = 624 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 92/232 (39%), Gaps = 46/232 (19%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--- 79 RP T E+ GQ L+ I A+ A+AL LF GP G+GKTT A+++A+++ Sbjct: 12 RPETFEDVVGQSAITKTLENAI-ASNHLAQAL---LFTGPRGVGKTTCARILAKKINQQN 67 Query: 80 ----------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEE 123 N D+ +L + + V IDE+H LS Sbjct: 68 AEVDPDEDFAFNIFELDAASNNSVDDIRSLTEQVRIPPQVGNFKVYIIDEVHMLSTAA-- 125 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 F L E P A ++ I ATT + + R I +F Sbjct: 126 --------FNAFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI---FDFK 166 Query: 184 EIE--DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 I D++ ++R A + G+ DEA IA ++ G R + + RV F+ Sbjct: 167 RITVADMRGHLKRIAGIEGITADDEALHIIAQKADGALRDSLSIFDRVVSFS 218 >gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia 768-28] gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia 768-28] Length = 338 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 48/243 (19%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP +++ Q E +K ++ + H+LF GPPG GKTT+A +AREL Sbjct: 9 VEKYRPSRIDDIIDQEEVKERVKQLLKTGN-----MPHMLFYGPPGTGKTTMALAIAREL 63 Query: 79 -GVNFRSTSGPVIAKAGDLAALLTNLEDR---------------DVLFIDEIHRLSIIVE 122 G +R V+ +T + +R ++ +DE ++ + Sbjct: 64 YGDAWREN---VLELNASDERGITTIRERVKEFARTAPMGKAPYKLIILDEADNMTSDAQ 120 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 + L ME + N++RF LIA V + +P+Q R + R + Sbjct: 121 QALRRMMEMYA----------------NVTRFILIA--NYVSRIIDPIQSRCAM-FRFSP 161 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 + + ++ A G+ VTDEA I S+G R A L+ A A A+ IT Sbjct: 162 LPKDAVLGRLRDIASREGVKVTDEALEAIWDISQGDMRKAINTLQ-----AATATAREIT 216 Query: 243 REI 245 E+ Sbjct: 217 PEV 219 >gi|312148351|gb|ADQ31010.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi JD1] Length = 560 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 25/228 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ + I ATT L ++ R ++ Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 + ++++ + DEA IA +S G+ R A L ++ F++ Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFSD 230 >gi|196012674|ref|XP_002116199.1| hypothetical protein TRIADDRAFT_30509 [Trichoplax adhaerens] gi|190581154|gb|EDV21232.1| hypothetical protein TRIADDRAFT_30509 [Trichoplax adhaerens] Length = 299 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 24/34 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA +VA+E G+NF S GP I Sbjct: 65 ILLYGPPGCGKTLLAGIVAKECGLNFISIKGPEI 98 >gi|317503214|ref|ZP_07961273.1| replication-associated recombination protein A [Prevotella salivae DSM 15606] gi|315665658|gb|EFV05266.1| replication-associated recombination protein A [Prevotella salivae DSM 15606] Length = 73 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 8/68 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L+E+ GQ V + L+ I+A + + + GPPG+GKTTLAQ++A +L Sbjct: 9 MRPHSLDEYVGQQHLVGRGAVLRQMIDAGR-----ISSFILWGPPGVGKTTLAQIIAHKL 63 Query: 79 GVNFRSTS 86 F + S Sbjct: 64 ETPFYTLS 71 >gi|326382066|ref|ZP_08203759.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL B-59395] gi|326199492|gb|EGD56673.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL B-59395] Length = 435 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 25/162 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP++L GQ + A R L ++ GPPG GKTT+A+++A + Sbjct: 20 LRPQSLAAVVGQEHVLGP-----DGAIGRMVTEHRLASMILWGPPGCGKTTIARLLAEQT 74 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRDV-----LFIDEIHRLSIIVEEILYPAMEDFQ 133 + F S A L + R+V LF+DE+HR + ++ P +ED Sbjct: 75 DLAFEPLSATFSGVADLRKVFLAAQKRREVGQGTLLFVDEVHRFNRAQQDSFLPYVEDGT 134 Query: 134 LDLMVG---EGPS--------ARSVKINLSRFTLIAATTRVG 164 + ++VG E PS +R L R A TT +G Sbjct: 135 I-VLVGATTENPSFELNAALLSRCQVFVLKRLDEAALTTLIG 175 >gi|215500541|gb|EEC10035.1| werner helicase interacting protein, putative [Ixodes scapularis] Length = 400 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 19/163 (11%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 L+RP LE F GQ + S L+ I + ++ ++ GPPG GKTTLA +++++ Sbjct: 5 LMRPSQLEAFVGQDGTLGEKSMLRKLIAS-----NSVPSMILWGPPGCGKTTLAHIISQK 59 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLE----------DRDVLFIDEIHRLSIIVEEILYP 127 + + + A + + + LE + VLFIDEIHR + + + + Sbjct: 60 CKESSEAHFVTLSATSSGVKDVKDTLERARNDQRMFKRKTVLFIDEIHRFNKLQQLVGLC 119 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170 + L+ + P ++K + R + + A G +TN L Sbjct: 120 NRASPIVSLLTNDRPGVLTLKQAMRRKSGL-AQAHAGSVTNQL 161 >gi|219685248|ref|ZP_03540068.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii Far04] gi|219673344|gb|EED30363.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii Far04] Length = 560 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 25/227 (11%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --KNGPTVMPCGECNNCKSIDNDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAVSKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ I ATT L ++ R +E Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPHYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 + ++++ + DEA IA +S G+ R A L +V F Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFT 229 >gi|307266278|ref|ZP_07547819.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii Rt8.B1] gi|326391162|ref|ZP_08212707.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus JW 200] gi|306918728|gb|EFN48961.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii Rt8.B1] gi|325992795|gb|EGD51242.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus JW 200] Length = 611 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/95 (42%), Positives = 47/95 (49%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE K FIE A VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 171 EELQEIVEFLKYPKKFIELG---ARIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L D+ ++FIDEI Sbjct: 228 SDFVEMFVGVGAARVRDLFDQAKKNAPCIVFIDEI 262 >gi|290981375|ref|XP_002673406.1| predicted protein [Naegleria gruberi] gi|284086989|gb|EFC40662.1| predicted protein [Naegleria gruberi] Length = 345 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 81/211 (38%), Gaps = 55/211 (26%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78 RP+T+++ Q E S LK +E L H+LF GPPG GKT+ A +A++L Sbjct: 14 RPKTVDDVVHQEEVVSALKKSLEVGN-----LPHLLFYGPPGNGKTSTATAIAKQLFGPE 68 Query: 79 ---------------GVNFRSTSGPVIAKAGDLAALLTNLEDR--------DVLFIDEIH 115 G+N T A+ A+ N + ++ +DE Sbjct: 69 LYKTRVLELNASDERGINVIRTKVKTFAQ----TAVSENPTGKGKYPCPPFKIIILDEAD 124 Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175 +++ + L ME + N++RF LI V + +P+ R Sbjct: 125 SMTVDAQSALRRTMETYS----------------NVTRFCLIC--NYVSRIIDPITSRCA 166 Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 R E LK +Q A G+ + DE Sbjct: 167 -KFRFKPLEYSLLKERLQYIANQEGITLKDE 196 >gi|228473203|ref|ZP_04057958.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga gingivalis ATCC 33624] gi|228275353|gb|EEK14145.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga gingivalis ATCC 33624] Length = 362 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 76/303 (25%), Positives = 108/303 (35%), Gaps = 71/303 (23%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP++ + GQ L E A A +LF GP G+GKTT A+++A+++ Sbjct: 12 RPQSFVDVVGQKAITDTL----ENAIANDHLAQALLFTGPRGVGKTTCARILAKKINEKT 67 Query: 83 RSTSGPVIAKAGDLAALLTNLE------------------------DRDVLFIDEIHRLS 118 T G D A + L+ V IDE+H LS Sbjct: 68 TPTDGD-----NDFAFNIFELDAASNNSVEGIRSLIEQVRIPPQVGKYKVYIIDEVHMLS 122 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 F L E P A ++ I ATT + + R I Sbjct: 123 NAA----------FNAFLKTLEEPPAHAI--------FILATTEKHKVIPTILSRCQI-F 163 Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 I D + ++ AK GL DEA IA ++ G R A + RV F Sbjct: 164 DFKRITINDAREYLKYIAKEQGLEAEDEALQIIAQKADGAMRDALSIFDRVVSFC----G 219 Query: 239 KTITREIADAALLRLAIDKM----------GFDQLDLRYLTMIARNFGGGPVGIETISAG 288 KTITR+ L L D QL + + +++A F G + AG Sbjct: 220 KTITRQAVSEILNVLDYDTYFKVTDLIVSNNIPQLLIEFNSILAHGFDG-----QHFIAG 274 Query: 289 LSE 291 L+E Sbjct: 275 LAE 277 >gi|227830675|ref|YP_002832455.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15] gi|229579582|ref|YP_002837981.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.G.57.14] gi|284998202|ref|YP_003419969.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5] gi|227457123|gb|ACP35810.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15] gi|228010297|gb|ACP46059.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.G.57.14] gi|284446097|gb|ADB87599.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5] Length = 759 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 17/136 (12%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDH-------- 56 G S + QE + P+ E G +E ++ +E E H Sbjct: 168 GRTSLEIRQEPVKETAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKG 227 Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG+GKT LA+ +A E+G F S +GP I G+ L + + + Sbjct: 228 VLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNAPAI 287 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 288 IFIDEIDAIAPKREEV 303 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 503 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 536 >gi|224533668|ref|ZP_03674257.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi CA-11.2a] gi|224513341|gb|EEF83703.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi CA-11.2a] Length = 560 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 25/228 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ + I ATT L ++ R ++ Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 + ++++ + DEA IA +S G+ R A L ++ F++ Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFSD 230 >gi|224001990|ref|XP_002290667.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335] gi|220974089|gb|EED92419.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335] Length = 904 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT +A+ +A E G NF S GP Sbjct: 619 VLFYGPPGCGKTLMAKAIANECGANFISIKGP 650 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 73/161 (45%), Gaps = 39/161 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL--------TNLEDR 106 VL GP G GKT +A+ VA E G F +GP VI+K AG+ L N D Sbjct: 342 VLLTGPSGCGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFEDAEANAPDY 401 Query: 107 D--VLFIDEIHRLSI-------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157 + ++FIDEI ++ VE+ + + L LM G P+ S+ +I Sbjct: 402 NGAIIFIDEIDSIAPRRDKAGGEVEKRIVSQL----LTLMDGLKPT--------SKVIVI 449 Query: 158 AATTRVGLLTNPLQ-----DR---FGIPIRLNFYEIEDLKT 190 AAT R G++ L+ DR GIP EI +KT Sbjct: 450 AATNRPGVVEPALRRPGRFDRELDMGIPDEKGRLEILQIKT 490 >gi|242023130|ref|XP_002431989.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517340|gb|EEB19251.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 942 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 701 ILICGPPGCGKTLLAKAVANEAGINFISVKGP 732 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VL 109 L GPPG GKT LA +A EL V S P + +G+ + L DR VL Sbjct: 261 LLHGPPGCGKTLLATAIAGELDVELIQISAPELIGGVSGESEERIRELFDRAVESAPCVL 320 Query: 110 FIDEI 114 FIDE+ Sbjct: 321 FIDEV 325 >gi|168039290|ref|XP_001772131.1| predicted protein [Physcomitrella patens subsp. patens] gi|162676594|gb|EDQ63075.1| predicted protein [Physcomitrella patens subsp. patens] Length = 769 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 49/104 (47%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++F GQ L+ ++ K E D VL GPPG GKT LA+ +A E Sbjct: 230 TFDDFAGQEYVKRELQEVVKILKDSKEFEDLGIYCPKGVLLYGPPGTGKTLLAKAIAGEA 289 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEI 114 GV F S SG + G AA + +L R ++FIDEI Sbjct: 290 GVPFFSASGAEFVEMFVGVAAARVRDLFTRARQFAPSIVFIDEI 333 >gi|159476808|ref|XP_001696503.1| flagellar associated protein [Chlamydomonas reinhardtii] gi|158282728|gb|EDP08480.1| flagellar associated protein [Chlamydomonas reinhardtii] Length = 817 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 521 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCV 580 Query: 109 LFIDEIHRLSI 119 LF DE+ +++ Sbjct: 581 LFFDELDSIAV 591 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108 +L GPPG GKT +A+ VA E G F +GP I +L + E + Sbjct: 248 ILLYGPPGSGKTLIARAVANETGAFFVVVNGPEIMSKLAGESESNLRKVFQEAEKNAPSI 307 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 308 IFIDEVDSIA 317 >gi|148259183|ref|YP_001233310.1| recombination factor protein RarA [Acidiphilium cryptum JF-5] gi|326402336|ref|YP_004282417.1| replication-associated recombination protein A [Acidiphilium multivorum AIU301] gi|146400864|gb|ABQ29391.1| Recombination protein MgsA [Acidiphilium cryptum JF-5] gi|325049197|dbj|BAJ79535.1| replication-associated recombination protein A [Acidiphilium multivorum AIU301] Length = 444 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 17/133 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP L E GQ V L +E +L ++ GPPG+GKTT+A+++A Sbjct: 33 LRPHELAEVIGQPHLVGPDGTLTRMLERG-----SLASLILWGPPGVGKTTIARLLADRA 87 Query: 79 GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S V + DL + R +LF+DEIHR + ++ P +E+ Sbjct: 88 GLVFVQISA-VFSGVADLKRVFEEAARRRRTGARTLLFVDEIHRFNRAQQDGFLPVVEEG 146 Query: 133 QLDLM--VGEGPS 143 + L+ E PS Sbjct: 147 TITLVGATTENPS 159 >gi|328781990|ref|XP_392923.4| PREDICTED: smallminded [Apis mellifera] Length = 939 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 678 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 709 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109 L GPPG GKT LA +A ELG+ + P V +G+ A + L ++ V+ Sbjct: 327 LLHGPPGCGKTLLAHAIAGELGIPLLKVAAPELVTGVSGESEARIRELFEQALAIAPCVI 386 Query: 110 FIDEI 114 F+DEI Sbjct: 387 FLDEI 391 >gi|227827953|ref|YP_002829733.1| ATPase AAA [Sulfolobus islandicus M.14.25] gi|229585220|ref|YP_002843722.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27] gi|238620179|ref|YP_002915005.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4] gi|227459749|gb|ACP38435.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25] gi|228020270|gb|ACP55677.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27] gi|238381249|gb|ACR42337.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4] gi|323475040|gb|ADX85646.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A] gi|323477771|gb|ADX83009.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4] Length = 759 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 17/136 (12%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDH-------- 56 G S + QE + P+ E G +E ++ +E E H Sbjct: 168 GRTSLEIRQEPVKETAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKG 227 Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG+GKT LA+ +A E+G F S +GP I G+ L + + + Sbjct: 228 VLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNAPAI 287 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 288 IFIDEIDAIAPKREEV 303 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 503 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 536 >gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I] gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I] Length = 329 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP++L+E Q + LK F+E + + H+LF GPPG GKTT A +A +L G Sbjct: 14 RPKSLDEIVDQEDIVRRLKKFVEE-----KNVPHMLFAGPPGTGKTTAALALAHDLYGEK 68 Query: 82 FRS 84 +R Sbjct: 69 YRQ 71 >gi|326926688|ref|XP_003209530.1| PREDICTED: spermatogenesis-associated protein 5-like protein 1-like, partial [Meleagris gallopavo] Length = 600 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 11/75 (14%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNL--------- 103 + VL VGPPG+GKT L + VA+E+G SGP + ++ G+ L ++ Sbjct: 77 NGVLLVGPPGVGKTLLVKAVAKEVGAYLLCVSGPALYGSRPGESEENLRSIFEKGREMSC 136 Query: 104 EDRDVLFIDEIHRLS 118 E VLFIDEI L Sbjct: 137 EGPTVLFIDEIDALC 151 >gi|289432058|ref|YP_003461931.1| ATPase AAA [Dehalococcoides sp. GT] gi|289432142|ref|YP_003462015.1| ATPase AAA [Dehalococcoides sp. GT] gi|288945778|gb|ADC73475.1| ATPase associated with various cellular activities AAA_5 [Dehalococcoides sp. GT] gi|288945862|gb|ADC73559.1| ATPase associated with various cellular activities AAA_5 [Dehalococcoides sp. GT] Length = 308 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 9/162 (5%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115 HV+ GPP L KT + + G G +KAG L L+ E + L IDE+ Sbjct: 121 HVMLTGPPALAKTLFLWDIEQTFGEQAIWLVGSATSKAG-LWDLVAEREPK-FLLIDEMD 178 Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175 +++ + L ME +L R + IN + +IAA+ R+ L+ L+ RF Sbjct: 179 KMNAVDMAALLTMMEGGRL----VRAKRGRELDIN-NPLKVIAASNRLEKLSPELRSRFA 233 Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 I +LN Y + T+V +G + ++ ++ A EIA + G Sbjct: 234 IR-KLNAYGRSEFLTVV-KGVLVRKESLPNDLAEEIARKLDG 273 >gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM 2160] gi|83288436|sp|Q3ITJ2|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|76556967|emb|CAI48541.1| replication factor C small subunit I [Natronomonas pharaonis DSM 2160] Length = 325 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 13/82 (15%) Query: 12 VSQEDAD-------ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 +S+ DAD I RP+TL++ G LK +I L H+LF GP G Sbjct: 1 MSEGDADGGGREIWIEKYRPQTLDDIVGHESITERLKQYIAQND-----LPHLLFAGPAG 55 Query: 65 LGKTTLAQVVAREL-GVNFRST 85 +GKTT A +A+E+ G ++R Sbjct: 56 VGKTTAATAIAKEVYGDDWREN 77 >gi|332300232|ref|YP_004442153.1| ATP-dependent Clp protease ATP-binding subunit clpX [Porphyromonas asaccharolytica DSM 20707] gi|332177295|gb|AEE12985.1| ATP-dependent Clp protease ATP-binding subunit clpX [Porphyromonas asaccharolytica DSM 20707] Length = 439 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103 A +++ VGP G GKT LAQ +AR L V F V+ +AG D+ ++++ L Sbjct: 137 AKSNIIMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLLQNCD 196 Query: 104 -----EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 197 YDVAAAERGIVFIDEIDKIA 216 >gi|293375579|ref|ZP_06621853.1| recombination factor protein RarA [Turicibacter sanguinis PC909] gi|292645796|gb|EFF63832.1| recombination factor protein RarA [Turicibacter sanguinis PC909] Length = 421 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 16/147 (10%) Query: 21 LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 L+RPRTL+E GQ L+ IE + +++F GP G GKTT+A ++A Sbjct: 8 LIRPRTLDEVVGQQHLIGEGQILRKLIEV-----NHIPNLIFYGPSGTGKTTIANIIASL 62 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDF 132 + AK D+ ++++L + L++DEI + ++ L +E Sbjct: 63 SNKKIYKLNA-TDAKTEDIKQIISSLNTLEGMNGIFLYLDEIQNFNKKQQQTLLKYIETG 121 Query: 133 QLDLMVG--EGPSARSVKINLSRFTLI 157 Q+ L+ E P LSR T++ Sbjct: 122 QITLITSTTENPYFTIFSAILSRSTIL 148 >gi|168004780|ref|XP_001755089.1| predicted protein [Physcomitrella patens subsp. patens] gi|162693682|gb|EDQ80033.1| predicted protein [Physcomitrella patens subsp. patens] Length = 503 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 6/102 (5%) Query: 54 LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDV 108 L ++F GPPG GKT+L + +AR + F + S + + + A + +R + Sbjct: 127 LSSIIFWGPPGTGKTSLVRAIARAVSYRFIALSAVSCGLKEVREILEEAKRVRKFGERTL 186 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 LF+DEIHR + ++ P +E + + +G S +IN Sbjct: 187 LFLDEIHRFNKSQQDAFLPYVEAGHI-VFIGATTENPSFEIN 227 >gi|121603730|ref|YP_981059.1| ATP-dependent protease La [Polaromonas naphthalenivorans CJ2] gi|120592699|gb|ABM36138.1| ATP-dependent protease La [Polaromonas naphthalenivorans CJ2] Length = 789 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAALLT-NLE 104 + FVGPPG+GKT+L Q +A LG F R + G V +A G + ++ NL Sbjct: 357 LCFVGPPGVGKTSLGQSIAHALGRPFVRVSLGGVHDEAEIRGHRRTYIGAMPGMIVQNLR 416 Query: 105 D----RDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V+ +DEI +LS E+L P D +G V +LS Sbjct: 417 KAGARHCVMMLDEIDKLSPSAHGDPSAALLEVLDPEQNSTFRDNYLG-------VPFDLS 469 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 R +A + + P++DR + I L Y E+ I QR Sbjct: 470 RVVFVATANVIDQVPAPVRDRMEV-IELPGYTQEEKLQIAQR 510 >gi|325114387|emb|CBZ49944.1| hypothetical protein NCLIV_004280 [Neospora caninum Liverpool] Length = 762 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ A + +L D+ V Sbjct: 503 VLFYGPPGCGKTLLAKAVANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAAPCV 562 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 563 IFFDEMDSIA 572 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL G G GKT LA+ +A E G NF + +GP V++K AG+ A L + + + Sbjct: 230 VLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSPCL 289 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 290 LFIDEIDSIA 299 >gi|302829468|ref|XP_002946301.1| hypothetical protein VOLCADRAFT_78972 [Volvox carteri f. nagariensis] gi|300269116|gb|EFJ53296.1| hypothetical protein VOLCADRAFT_78972 [Volvox carteri f. nagariensis] Length = 815 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCV 573 Query: 109 LFIDEIHRLSI 119 LF DE+ +++ Sbjct: 574 LFFDELDSIAV 584 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108 +L GPPG GKT +A+ VA E G F +GP I +L + E + Sbjct: 241 ILLYGPPGSGKTLIARAVANETGAFFVVVNGPEIMSKLAGESESNLRKVFQEAEKNAPSI 300 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 301 IFIDEVDSIA 310 >gi|16124820|ref|NP_419384.1| MoxR protein [Caulobacter crescentus CB15] gi|221233538|ref|YP_002515974.1| MoxR-like ATPase [Caulobacter crescentus NA1000] gi|13421760|gb|AAK22552.1| MoxR protein [Caulobacter crescentus CB15] gi|220962710|gb|ACL94066.1| MoxR-like ATPase [Caulobacter crescentus NA1000] Length = 323 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 104/248 (41%), Gaps = 49/248 (19%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +R + GQ EA + L V + A HVL GPPG KT LAQ AR + ++ Sbjct: 18 IRAEIAKAVVGQDEAVNLLLVALFAGG-------HVLLEGPPGTAKTLLAQSFARSVALD 70 Query: 82 F-RSTSGPVIAKAGDLAALLTNLEDR-----------DVLFIDEIHRLSIIVEEILYPAM 129 + R P + + A L N + ++L DEI+R + L AM Sbjct: 71 YGRIQFTPDLTPGDVIGANLFNFQTSTFTLTRGPVFCELLLADEINRTPPKTQAALLEAM 130 Query: 130 EDFQLDLMVGEGPSARSVKINLS-RFTLIAATTRVGLL-TNPLQ----DRFGIPIRLNFY 183 ++ Q+ + V LS RFT++A + T PL DRF LN+ Sbjct: 131 QERQVTI--------DGVSHPLSPRFTVVATQNPIEQQGTYPLPEAQLDRFLFKHVLNYP 182 Query: 184 EIEDLKTIV----QRGAKLTGLA-----VTDEAACEIAM----RSRGTPRIAGR---LLR 227 IE + IV QR ++ A V D AA + A+ ++R T + G L+R Sbjct: 183 SIEQERAIVVGHGQRTGQMDPAAFGVEPVLDRAAIDAAVATVAQARLTDEVVGYIVDLVR 242 Query: 228 RVRDFAEV 235 RD ++ Sbjct: 243 ATRDSTDI 250 >gi|313885837|ref|ZP_07819580.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas asaccharolytica PR426713P-I] gi|312924741|gb|EFR35507.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas asaccharolytica PR426713P-I] Length = 439 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103 A +++ VGP G GKT LAQ +AR L V F V+ +AG D+ ++++ L Sbjct: 137 AKSNIIMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLLQNCD 196 Query: 104 -----EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 197 YDVAAAERGIVFIDEIDKIA 216 >gi|307168241|gb|EFN61467.1| Nuclear valosin-containing protein-like [Camponotus floridanus] Length = 943 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 692 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 723 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109 L GPPG GKT LA VA EL + +GP V +G+ A + +L ++ V+ Sbjct: 327 LLHGPPGCGKTLLAYAVAGELNMPLLKVAGPELVTGVSGESEARIRDLFEQALTLAPCVV 386 Query: 110 FIDEI 114 F+DEI Sbjct: 387 FLDEI 391 >gi|72387706|ref|XP_844277.1| RuvB-like DNA helicase [Trypanosoma brucei TREU927] gi|62359429|gb|AAX79866.1| RuvB-like DNA helicase, putative [Trypanosoma brucei] gi|70800810|gb|AAZ10718.1| RuvB-like DNA helicase, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261327430|emb|CBH10405.1| ruvB-like DNA helicase, putative [Trypanosoma brucei gambiense DAL972] Length = 459 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 DAD + +P T + F GQV+A + +E + + A +LF GPPG GKT LA VA Sbjct: 30 DAD-GVAKP-TADGFVGQVKAREAAGIVVELTRTKKMAGRALLFAGPPGTGKTALALGVA 87 Query: 76 RELG 79 +ELG Sbjct: 88 KELG 91 >gi|193713874|ref|XP_001948376.1| PREDICTED: nuclear valosin-containing protein-like [Acyrthosiphon pisum] Length = 792 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 550 VLLCGPPGCGKTLLAKAVANEAGINFISIKGP 581 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109 L GPPG GKT LAQ VA EL + S + P V+ +G+ + L + VL Sbjct: 245 LLHGPPGCGKTLLAQAVAGELKIPLISIAAPQLVVGISGESEKRVRKLFETAVKSAPCVL 304 Query: 110 FIDEIHRLS 118 FIDE+ +S Sbjct: 305 FIDEVDSIS 313 >gi|126179196|ref|YP_001047161.1| replication factor C small subunit [Methanoculleus marisnigri JR1] gi|150415672|sp|A3CUX9|RFCS_METMJ RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|125861990|gb|ABN57179.1| replication factor C small subunit [Methanoculleus marisnigri JR1] Length = 322 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 84/222 (37%), Gaps = 47/222 (21%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RPR L+E GQ + L+ +++ L H+LF G G+GKTT A +ARE Sbjct: 9 IEKYRPRRLDEMVGQKDIVVRLQSYVKTGN-----LPHLLFTGSAGIGKTTAAVALAREF 63 Query: 79 -----GVNFRSTSGP-------------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 NFR + A+ LA +LF+DE L+ Sbjct: 64 FGDSWQTNFREMNASDERGIDVVRNQIKEFARTSPLAGATFK-----ILFLDEADALTTD 118 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 + L ME + AR+ + LS + +P+Q R I R Sbjct: 119 AQAALRRTMETY-----------ARTCRFILS-------CNYSSKIIDPIQSRCAI-YRF 159 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 + E + +R A GL VT+ A I + G R A Sbjct: 160 RPLDREAVIEETRRIAAAEGLTVTEGALDAIVYVASGDMRKA 201 >gi|291394829|ref|XP_002713855.1| PREDICTED: peroxin1 isoform 2 [Oryctolagus cuniculus] Length = 1284 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA VVARE G+NF S GP Sbjct: 877 ILLYGPPGTGKTLLAGVVARESGMNFISVKGP 908 >gi|110803416|ref|YP_699072.1| recombination factor protein RarA [Clostridium perfringens SM101] gi|110683917|gb|ABG87287.1| ATPase, AAA family [Clostridium perfringens SM101] Length = 415 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 20/148 (13%) Query: 21 LLRPRTLEEFTGQVEAC------SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 ++RP+ LE+ GQ SNL + + + + +F GPPG+GKTTLA ++ Sbjct: 7 IMRPKKLEDIVGQKHIVGEGTPLSNL--------IKNKNMINCIFYGPPGVGKTTLANII 58 Query: 75 ARELGVNFRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130 + F + I + + + + NL + +L+IDE+ + ++ L +E Sbjct: 59 SNYTDKKFYKINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIE 118 Query: 131 DFQLDLMVG--EGPSARSVKINLSRFTL 156 D ++ L+ E P K LSR T+ Sbjct: 119 DGRVILIASTTENPYFAIHKAILSRSTI 146 >gi|290968389|ref|ZP_06559929.1| ATP-dependent protease, Lon family [Megasphaera genomosp. type_1 str. 28L] gi|290781576|gb|EFD94164.1| ATP-dependent protease, Lon family [Megasphaera genomosp. type_1 str. 28L] Length = 635 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 102/249 (40%), Gaps = 72/249 (28%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL--DHVLFVGPPGLGKTTLAQVV---AR 76 +RP+TL+ GQ A +EA +++ ++ H+L GPPG+GKTT A+++ A+ Sbjct: 170 VRPKTLQAVVGQERA-------VEAMQSKLASVYPQHLLLYGPPGVGKTTAARIILQEAK 222 Query: 77 ELGVNFRSTSGPVIAKAG--------DLA-ALLTNLED-------RD------------- 107 +L + P I G D+ LL ++ D +D Sbjct: 223 QLPFTPFAAEAPFIETDGTTLRWDSRDMTNPLLGSVHDPIYQGARKDLADTGIPEPKPGL 282 Query: 108 -------VLFIDEIHRLSIIVEEILYPAMED----FQLDLMVGEGPSARSVKINLSR--- 153 +LFIDEI + ++ L +ED F E P+ + L R Sbjct: 283 VTEAHGGILFIDEIGEMDPMLLNKLLKVLEDKKVTFDSAYYDEEDPNVPAYIHKLFRDGA 342 Query: 154 ---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-------EDLKTIVQRGAKLTGLAV 203 F LI ATTR NP IR E+ +D++ IV+ AK +++ Sbjct: 343 PADFILIGATTRDPSEINPA-------IRSRCAEVFFEPLVPQDIEKIVENAAKQLQVSL 395 Query: 204 TDEAACEIA 212 D A +IA Sbjct: 396 ADGVAAKIA 404 >gi|160936366|ref|ZP_02083735.1| hypothetical protein CLOBOL_01258 [Clostridium bolteae ATCC BAA-613] gi|158440649|gb|EDP18387.1| hypothetical protein CLOBOL_01258 [Clostridium bolteae ATCC BAA-613] Length = 416 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 44/138 (31%) Query: 17 ADISLLRPRTLEEF-----TGQ-----------------VEACSNLKVFIEAAKARAEAL 54 ADI LL+P+ ++ F GQ V AC N+ V ++ + Sbjct: 40 ADIRLLKPKEIKAFLDEYVIGQDDAKKVLSVAVYNHYKRVTACQNMDVDVQKS------- 92 Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD 107 ++L VGP G GKT LAQ +A+ L V F + +AG D+ +L L D D Sbjct: 93 -NILMVGPTGSGKTYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYD 151 Query: 108 -------VLFIDEIHRLS 118 +++IDEI +++ Sbjct: 152 ISRAEYGIIYIDEIDKIT 169 >gi|153813469|ref|ZP_01966137.1| hypothetical protein RUMOBE_03889 [Ruminococcus obeum ATCC 29174] gi|149830413|gb|EDM85505.1| hypothetical protein RUMOBE_03889 [Ruminococcus obeum ATCC 29174] Length = 437 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 28/131 (21%) Query: 16 DADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKAR---AEALD------HVLFVG 61 D+DI+LL+P + L+++ GQ EA L V + R ++ LD ++L +G Sbjct: 60 DSDINLLKPEEIHKILDDYVIGQDEAKKALSVAVYNHYKRITASKNLDVELQKSNILMLG 119 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD------- 107 P G GKT LAQ +AR L V F + +AG + + N+ D D Sbjct: 120 PTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYG 179 Query: 108 VLFIDEIHRLS 118 +++IDEI +++ Sbjct: 180 IIYIDEIDKIT 190 >gi|291394827|ref|XP_002713854.1| PREDICTED: peroxin1 isoform 1 [Oryctolagus cuniculus] Length = 1244 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA VVARE G+NF S GP Sbjct: 837 ILLYGPPGTGKTLLAGVVARESGMNFISVKGP 868 >gi|240850808|ref|YP_002972208.1| recombination factor protein RarA [Bartonella grahamii as4aup] gi|240267931|gb|ACS51519.1| recombination factor protein RarA [Bartonella grahamii as4aup] Length = 439 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 7/85 (8%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DR 106 ++ ++F GPPG GKTT+A+++A E F S + +L + + D+ Sbjct: 53 SIGSMIFWGPPGTGKTTVARLLALETSFAFEQVSA-IFTGVSELKKIFEVAQRRFISGDK 111 Query: 107 DVLFIDEIHRLSIIVEEILYPAMED 131 +LF+DEIHR + ++ ME+ Sbjct: 112 TLLFVDEIHRFNRAQQDSFLSVMEE 136 >gi|219684238|ref|ZP_03539182.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii PBr] gi|219672227|gb|EED29280.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii PBr] Length = 560 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 25/227 (11%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --KNGPTVMPCGECNNCKSIDNDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAVSKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ I ATT L ++ R +E Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPHYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 + ++++ + DEA IA +S G+ R A L +V F Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFT 229 >gi|226321772|ref|ZP_03797298.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi Bol26] gi|226232961|gb|EEH31714.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi Bol26] Length = 560 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 29/230 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--YE 184 ++ ++ +A ++++ + I ATT L ++ R NF Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ---HFNFKLLS 180 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 ++ + ++++ + DEA IA +S G+ R A L ++ F + Sbjct: 181 LDKIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230 >gi|316970918|gb|EFV54772.1| conserved hypothetical protein [Trichinella spiralis] Length = 1261 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 30/50 (60%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQVEA + V ++ K + A VL GPPG GKT +A +ARELG Sbjct: 143 FVGQVEARTAAGVIVDLVKMKRMAGRAVLLAGPPGTGKTAIALAIARELG 192 >gi|282851622|ref|ZP_06260987.1| recombination factor protein RarA [Lactobacillus gasseri 224-1] gi|282557590|gb|EFB63187.1| recombination factor protein RarA [Lactobacillus gasseri 224-1] Length = 401 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 15/88 (17%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--------VIAKAGDLAALLTN 102 A+ L ++ GPPG+GKT++A +A FR + ++A+ G ++ + Sbjct: 4 AKLLSSMILYGPPGIGKTSIASAIAGSTKYAFRKLNAATDTKKDLQIVAEEGKMSGTV-- 61 Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAME 130 +L +DEIHRL ++ L P +E Sbjct: 62 -----ILLLDEIHRLDKTKQDFLLPLLE 84 >gi|56419849|ref|YP_147167.1| spore formation protein [Geobacillus kaustophilus HTA426] gi|261419520|ref|YP_003253202.1| stage V sporulation protein K [Geobacillus sp. Y412MC61] gi|297530510|ref|YP_003671785.1| stage V sporulation protein K [Geobacillus sp. C56-T3] gi|319766336|ref|YP_004131837.1| stage V sporulation protein K [Geobacillus sp. Y412MC52] gi|56379691|dbj|BAD75599.1| spore formation protein [Geobacillus kaustophilus HTA426] gi|261375977|gb|ACX78720.1| stage V sporulation protein K [Geobacillus sp. Y412MC61] gi|297253762|gb|ADI27208.1| stage V sporulation protein K [Geobacillus sp. C56-T3] gi|317111202|gb|ADU93694.1| stage V sporulation protein K [Geobacillus sp. Y412MC52] Length = 310 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 40/221 (18%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTSGPVIAKAGDLAALL---TNL 103 KA +AL H++F G PG GKTT+A+++ + +N S + A+ DL T Sbjct: 81 KANRQAL-HMIFKGNPGTGKTTVARLLGKLFFEMNVLSKGHFIEAERADLVGEYIGHTAS 139 Query: 104 EDRD--------VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSV 147 + RD +LFIDE + L+ E + L MED+ DL+V + + Sbjct: 140 KTRDLIKKARGGILFIDEAYSLARGGEKDFGKEAIDTLVKGMEDYCDDLVVILAGYPKEM 199 Query: 148 KINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 LS NP L RF + I Y +E+L I ++ + +T E Sbjct: 200 DYFLS--------------LNPGLPSRFPLTIEFPDYTVEELVQIAKQMLREREYEMTPE 245 Query: 207 AACEIAMRSRGTPRIAGRLL----RRVRDFAEVAHAKTITR 243 A ++ + GT GRL R VR+ E A K R Sbjct: 246 AERKLYIHLEGTLEATGRLKFSNGRYVRNLIEKAIRKQAVR 286 >gi|158295544|ref|XP_316268.4| AGAP006205-PA [Anopheles gambiae str. PEST] gi|157016089|gb|EAA10786.4| AGAP006205-PA [Anopheles gambiae str. PEST] Length = 1020 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 769 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 800 >gi|195952935|ref|YP_002121225.1| ATP-dependent protease La [Hydrogenobaculum sp. Y04AAS1] gi|195932547|gb|ACG57247.1| ATP-dependent protease La [Hydrogenobaculum sp. Y04AAS1] Length = 807 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 43/211 (20%) Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDRDV------ 108 F+GPPG+GKT+L Q +A+ G F R + G + +A G + + R + Sbjct: 367 FIGPPGVGKTSLGQSIAKATGRKFVRISLGGIRDEAEIRGHRRTYVGAMPGRIIQAIKQA 426 Query: 109 ------LFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 + +DEI +LS+ + E+L P DL +G +LS Sbjct: 427 GVKNPLIMLDEIDKLSVSFQGDPAAALLEVLDPEQNKSFTDLYIGH-------PFDLSEV 479 Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK---------TIVQRGAKLTGLAVTD 205 +A RV + PL DR + + E E L I G K + + + D Sbjct: 480 LFVATGNRVDTIPQPLLDRMEVLYLSGYSEEEKLHIAKNHLLPAIIKDHGFKESEINIED 539 Query: 206 EAACEI---AMRSRGTPRIAGRLLRRVRDFA 233 EA E+ R G + +L +R A Sbjct: 540 EAILEVIRSYTREAGVRNLKQKLASLLRKLA 570 >gi|195428164|ref|XP_002062144.1| GK17377 [Drosophila willistoni] gi|194158229|gb|EDW73130.1| GK17377 [Drosophila willistoni] Length = 1001 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 748 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 779 >gi|295109357|emb|CBL23310.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus obeum A2-162] Length = 437 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 28/131 (21%) Query: 16 DADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKARAEA---LD------HVLFVG 61 D+DI+LL+P + L+++ GQ EA L V + R A LD ++L +G Sbjct: 60 DSDINLLKPEEIHKILDDYVIGQDEAKKALSVAVYNHYKRITASRNLDVELQKSNILMLG 119 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD------- 107 P G GKT LAQ +AR L V F + +AG + + N+ D D Sbjct: 120 PTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYG 179 Query: 108 VLFIDEIHRLS 118 +++IDEI +++ Sbjct: 180 IIYIDEIDKIT 190 >gi|194751155|ref|XP_001957892.1| GF10639 [Drosophila ananassae] gi|190625174|gb|EDV40698.1| GF10639 [Drosophila ananassae] Length = 972 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 727 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 758 >gi|312115420|ref|YP_004013016.1| ATP-dependent protease La [Rhodomicrobium vannielii ATCC 17100] gi|311220549|gb|ADP71917.1| ATP-dependent protease La [Rhodomicrobium vannielii ATCC 17100] Length = 803 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L Q +AR + F R + G V +A G++ + Sbjct: 371 LCFVGPPGVGKTSLGQSIARAMERPFVRVSLGGVHDEAEIRGHRRTYIGSLPGNIIQGIK 430 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R+ V+ +DEI ++ ++ E+L P + D +G V +LS Sbjct: 431 KAGQRNAVMMLDEIDKMGRGIQGDPFAAMLEVLDPEQNNTFRDAYLG-------VPFDLS 483 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 R T IA + + PL DR I I+L Y ++ I +R Sbjct: 484 RVTFIATANMLDTIPGPLLDRMEI-IQLAGYTAKEKLEIAKR 524 >gi|229828303|ref|ZP_04454372.1| hypothetical protein GCWU000342_00361 [Shuttleworthia satelles DSM 14600] gi|229792897|gb|EEP29011.1| hypothetical protein GCWU000342_00361 [Shuttleworthia satelles DSM 14600] Length = 419 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 28/139 (20%) Query: 14 QEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD---------HVLF 59 +E +I+L +P+ L+ F GQ EA L V + R D +VL Sbjct: 64 RESFEINLKKPKELKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMRGDKTDVELQKSNVLM 123 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108 +GP G GKT LAQ +AR LGV F + +AG + + N+ D DV Sbjct: 124 LGPTGSGKTLLAQTLARTLGVPFAIADATTLTEAGYVGEDVENIILKLIQAADYDVEKAQ 183 Query: 109 ---LFIDEIHRLSIIVEEI 124 ++IDEI +++ E + Sbjct: 184 LGIIYIDEIDKITKKSENV 202 >gi|94266600|ref|ZP_01290282.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1] gi|93452771|gb|EAT03309.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1] Length = 419 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 31/135 (22%) Query: 15 EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA------------LDHV 57 EDA +L+P ++E GQ A +L V + R E ++ Sbjct: 56 EDAAGQILKPMEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGEAGEDFRDVELQKSNI 115 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---------- 103 L +GP G GKT LAQ +AR L V F + +AG D+ +L NL Sbjct: 116 LLIGPTGSGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVNLMQAADNDPER 175 Query: 104 EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 176 ASRGIVYIDEIDKIA 190 >gi|83319965|ref|YP_424487.1| recombination factor protein RarA [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283851|gb|ABC01783.1| ATPase, AAA family, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 412 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 7/113 (6%) Query: 21 LLRPRTLEEFTGQVEAC-SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 LLRP++ ++ GQ E SN + +L +F GP G+GKT+ A +A +L Sbjct: 8 LLRPKSTKDIIGQTEILKSNGLINKMILNNYCTSL---IFFGPSGVGKTSFAISLANDLK 64 Query: 80 VNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAME 130 ++ + K L ++ N ++R +L IDEIHRL+ ++IL ME Sbjct: 65 IDCEIFNASY-DKKEKLINIIQNALKKERFILIIDEIHRLNKDKQDILLEYME 116 >gi|13508410|ref|NP_110360.1| cell division protein FtsH [Mycoplasma pneumoniae M129] gi|2492509|sp|P75120|FTSH_MYCPN RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|1673833|gb|AAB95819.1| cell division protein FtsH [Mycoplasma pneumoniae M129] gi|301633109|gb|ADK86663.1| ATP-dependent metallopeptidase HflB [Mycoplasma pneumoniae FH] Length = 709 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 26/217 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE +E LK ++ A+ A + V+ GPPG GKT LA+ VA E GV F ++G Sbjct: 235 EEKHELLEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTG 294 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSII---VEEILYPAMEDFQLDL 136 G A + +L ++ ++FIDEI + VE Y +E L+ Sbjct: 295 SGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQ-TLNQ 353 Query: 137 MVGE--GPSARSVKINLSRFTLIAATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIV 192 ++ E G ++R+ + ++AAT R+ +L + L RF I++N +I++ + I+ Sbjct: 354 LLAEMDGFTSRTGVV------VMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGIL 407 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 Q AK L+ + + ++A R TP +G L V Sbjct: 408 QVHAKNKNLS-SKISLLDVAKR---TPGFSGAQLENV 440 >gi|195150721|ref|XP_002016299.1| GL11509 [Drosophila persimilis] gi|194110146|gb|EDW32189.1| GL11509 [Drosophila persimilis] Length = 626 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDILDKARSAAPCV 570 Query: 109 LFIDEIHRLS 118 LF+DE+ ++ Sbjct: 571 LFLDELDSIA 580 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEI 114 +FIDEI Sbjct: 298 IFIDEI 303 >gi|332796205|ref|YP_004457705.1| AAA ATPase central domain-containing protein [Acidianus hospitalis W1] gi|332693940|gb|AEE93407.1| AAA ATPase central domain protein [Acidianus hospitalis W1] Length = 450 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 RP++L + Q + LK +IE+ + +L GPPG GKTTLAQ +A + G+ Sbjct: 10 RPKSLNDVENQDDVKQELKRWIESWLSGKPENKALLLYGPPGTGKTTLAQALAHDYGL 67 >gi|302037219|ref|YP_003797541.1| ATP-dependent protease La [Candidatus Nitrospira defluvii] gi|300605283|emb|CBK41616.1| ATP-dependent protease La [Candidatus Nitrospira defluvii] Length = 798 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 41/214 (19%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKT 68 + S+E D++ +R E+ G E + + K A +L VGPPG+GKT Sbjct: 307 KKSSEEGLDLAHVRKVLNEDHYGIKEVKERIVEHLAVLKLNPSAKAPILCLVGPPGVGKT 366 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDL----------------AALLTNLEDRDVLFID 112 +L Q +A+ +G F S + G+L A+ + V+ +D Sbjct: 367 SLGQSIAKAMGRTFERFSLGGLHDEGELRGHRRTYVGALPGRIIQAVRRAGVNNPVIMLD 426 Query: 113 EIHRL--------SIIVEEILYPAME----DFQLDLMVGEGPSARSVKINLSRFTLIAAT 160 E+ +L + + EIL PA D LDL +LS+ I Sbjct: 427 EVDKLGRDFRGDPAAALLEILDPAQNHTFRDHYLDL-----------PFDLSKVFFITTA 475 Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + L+ PL DR I IRLN Y + + I R Sbjct: 476 NTLETLSQPLLDRMEI-IRLNGYSEREKREIALR 508 >gi|95007473|emb|CAJ20695.1| transitional endoplasmic reticulum ATPase [Toxoplasma gondii RH] Length = 792 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ A + +L D+ V Sbjct: 513 VLFFGPPGCGKTLLAKAVANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAAPCV 572 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 573 IFFDEMDSIA 582 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL G G GKT LA+ +A E G NF + +GP V++K AG+ A L + + + Sbjct: 237 VLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSPCL 296 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 297 LFIDEIDSIA 306 >gi|313500332|gb|ADR61698.1| Lon_2 [Pseudomonas putida BIRD-1] Length = 805 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 50/189 (26%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ TI +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLTIAKRHLWPKQLEKAGVSK 554 Query: 199 TGLAVTDEA 207 T L+++D A Sbjct: 555 TSLSISDSA 563 >gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M] gi|42559422|sp|P60374|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M] Length = 322 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ +++ Q E LK F+E + + H+LF GPPG GKTT A +A EL Sbjct: 9 RPKRIDDIINQEEIKKALKSFVEK-----KNMPHLLFAGPPGTGKTTAALALAHEL 59 >gi|242036965|ref|XP_002465877.1| hypothetical protein SORBIDRAFT_01g047440 [Sorghum bicolor] gi|241919731|gb|EER92875.1| hypothetical protein SORBIDRAFT_01g047440 [Sorghum bicolor] Length = 712 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 426 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARQSAPCV 485 Query: 109 LFIDEIHRLSI 119 LF DE+ +++ Sbjct: 486 LFFDELDSIAM 496 >gi|302784052|ref|XP_002973798.1| hypothetical protein SELMODRAFT_640 [Selaginella moellendorffii] gi|300158130|gb|EFJ24753.1| hypothetical protein SELMODRAFT_640 [Selaginella moellendorffii] Length = 494 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108 VL GPPG GKT+LAQ VA+E GV +GP V G+ A + + D V Sbjct: 40 VLLYGPPGTGKTSLAQAVAKEAGVKMLVINGPEIVTEYHGESEAAMKAIFDSAAREAPSV 99 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 100 VFIDEL 105 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108 VL GPPG KT +A+ VA E G+NF + GP + KA V Sbjct: 306 VLLYGPPGCSKTMMARAVAAETGLNFIAVKGPELFSKWVGESEKAVRALFARAKAAAPSV 365 Query: 109 LFIDEIHRLSI 119 +F DEI L++ Sbjct: 366 VFFDEIDGLAV 376 >gi|254567680|ref|XP_002490950.1| Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase t [Pichia pastoris GS115] gi|238030747|emb|CAY68670.1| Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase t [Pichia pastoris GS115] gi|328352517|emb|CCA38916.1| replication factor C subunit 3/5 [Pichia pastoris CBS 7435] Length = 332 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP +L+ GQ + ++ F++ + L H+LF GPPG GKT+ +A+E+ G N Sbjct: 19 RPSSLDYVYGQHDTVDTVRKFVQDGR-----LPHLLFYGPPGTGKTSTIMALAKEIYGKN 73 Query: 82 FRS 84 +R+ Sbjct: 74 YRN 76 >gi|260830274|ref|XP_002610086.1| hypothetical protein BRAFLDRAFT_125661 [Branchiostoma floridae] gi|229295449|gb|EEN66096.1| hypothetical protein BRAFLDRAFT_125661 [Branchiostoma floridae] Length = 854 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E GVNF S GP Sbjct: 608 VLLAGPPGCGKTLLAKAIANESGVNFISVKGP 639 >gi|224534688|ref|ZP_03675260.1| DNA polymerase III, subunits gamma and tau [Borrelia spielmanii A14S] gi|224513936|gb|EEF84258.1| DNA polymerase III, subunits gamma and tau [Borrelia spielmanii A14S] Length = 561 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 25/227 (11%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K + +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKIA----NAYIFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + D DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --KNGPAVMPCGECNNCKSIDSDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ S I ATT L ++ R +E Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPSYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 + ++++ + DEA IA +S G+ R A L +V F Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSGGSVRDAYTLFDQVVSFT 229 >gi|94264492|ref|ZP_01288279.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1] gi|93455051|gb|EAT05278.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1] Length = 419 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 31/135 (22%) Query: 15 EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA------------LDHV 57 EDA +L+P ++E GQ A +L V + R E ++ Sbjct: 56 EDAAGQILKPMEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGEAGEDFRDVELQKSNI 115 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---------- 103 L +GP G GKT LAQ +AR L V F + +AG D+ +L NL Sbjct: 116 LLIGPTGSGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVNLMQAADNDPER 175 Query: 104 EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 176 ASRGIVYIDEIDKIA 190 >gi|157822837|ref|NP_001102690.1| peroxisome biogenesis factor 1 [Rattus norvegicus] gi|149029073|gb|EDL84367.1| similar to peroxisome biogenesis factor 1 (predicted) [Rattus norvegicus] Length = 1283 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA VVARE G+NF S GP Sbjct: 877 ILLYGPPGTGKTLLAGVVARESGMNFISIQGP 908 >gi|326514984|dbj|BAJ99853.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 826 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VL GPPG GKT LA+ +ARE NF S GP + G+ + + +L D+ V Sbjct: 547 VLLYGPPGCGKTLLAKAIARECKANFISVKGPELLTMWFGESESNVRDLFDKARQSAPCV 606 Query: 109 LFIDEIHRLSI 119 LF DE+ +++ Sbjct: 607 LFFDELDSIAV 617 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AG----DLAALLTNLEDR--DV 108 +L GPPG GKT LA+ +A E G NF +GP I AG +L + E + + Sbjct: 273 ILLYGPPGTGKTLLARAIAAESGANFVVINGPEIMSMMAGQSEDNLRKVFAQAEAQAPSI 332 Query: 109 LFIDEIHRLS 118 +F+DEI ++ Sbjct: 333 IFMDEIDAIA 342 >gi|118095837|ref|XP_001233697.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 443 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 11/75 (14%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALL---------TNL 103 + VL VGPPG+GKT L + VARE G SGP + ++ G+ L + Sbjct: 305 NGVLLVGPPGVGKTLLVKAVAREAGAYLLCISGPALYGSRPGESEENLRSVFEKGREMSC 364 Query: 104 EDRDVLFIDEIHRLS 118 E VLFIDEI L Sbjct: 365 EGPTVLFIDEIDALC 379 >gi|219847996|ref|YP_002462429.1| ATP-dependent protease La [Chloroflexus aggregans DSM 9485] gi|302425095|sp|B8G736|LON_CHLAD RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|219542255|gb|ACL23993.1| ATP-dependent protease La [Chloroflexus aggregans DSM 9485] Length = 824 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 45/217 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L + +AR LG F R++ G V +A G + + Sbjct: 371 LCFVGPPGVGKTSLGRSIARALGRKFVRTSLGGVRDEAEIRGHRRTYIGAMPGRIIQAMK 430 Query: 102 NLEDRDVLFI-DEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 N + + ++I DE+ ++ + E+L P + D + + +LS Sbjct: 431 NAKSKSPVYILDEVDKIGLDFRGDPTSALLEVLDPEQNNAFSDHYL-------EIPFDLS 483 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG---AKLTGLAVTDEAAC 209 + IA ++ + PL+DR I I + Y ED K + RG K E Sbjct: 484 KVIFIATANQLDPIPLPLRDRMEI-IEIGGY-TEDEKLEIARGFLIPKQREFHGLTEDQI 541 Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 E G +L+ +R++ A + + REIA Sbjct: 542 EFT---------EGAILKLIREYTREAGVRGLEREIA 569 >gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4] gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4] Length = 325 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPRTL++ Q + LK F+ + + H+LF GPPG GKTT A + +L G N Sbjct: 11 RPRTLDDIVNQKDIVDRLKRFV-----KERNMPHLLFAGPPGTGKTTSALALVHDLYGEN 65 Query: 82 F 82 + Sbjct: 66 Y 66 >gi|268611208|ref|ZP_06144935.1| recombination factor protein RarA [Ruminococcus flavefaciens FD-1] Length = 423 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 74/146 (50%), Gaps = 16/146 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL + GQ ++ L+ I++ + +++F GP G+GKTT+A+++A Sbjct: 9 IRPKTLADVVGQEHILADGKPLRRIIDSG-----TVPNMIFYGPSGVGKTTVARIIAENC 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNL-----EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 G++ +G A D+ ++ ++ E+ +L++DEI L+ ++ L +E+ Sbjct: 64 GMSLYKLNG-TNASISDIKDVVADIGTFGSENGILLYLDEIQYLNKKQQQSLLEYIENGD 122 Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E P +SR T+ Sbjct: 123 ITLIASTTENPYFSVYNAVISRSTVF 148 >gi|194865492|ref|XP_001971456.1| GG14421 [Drosophila erecta] gi|190653239|gb|EDV50482.1| GG14421 [Drosophila erecta] Length = 935 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 690 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 721 >gi|195338165|ref|XP_002035696.1| GM14837 [Drosophila sechellia] gi|194128789|gb|EDW50832.1| GM14837 [Drosophila sechellia] Length = 944 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 699 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 730 >gi|294788556|ref|ZP_06753798.1| magnesium chelatase, subunit ChlI family [Simonsiella muelleri ATCC 29453] gi|294483433|gb|EFG31118.1| magnesium chelatase, subunit ChlI family [Simonsiella muelleri ATCC 29453] Length = 442 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 17/156 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGV 80 LRP+ L + GQ K + A A + H ++ G G+GKTTLAQ++A Sbjct: 23 LRPKILSDVVGQQHLIGEGKPL---SVAIASGVPHSMILWGATGVGKTTLAQIIANSFDA 79 Query: 81 NFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F S S I +A A L R ++F+DE+HR + ++ P +E L Sbjct: 80 QFISLSAVFSGVKEIREAVLKAELAWQQGRRTIIFVDEVHRFNKAQQDAFLPHVES-GLI 138 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLT-NPL 170 +G S ++N A +R + T NPL Sbjct: 139 TFIGATTENPSFEVN------AALLSRASVYTLNPL 168 >gi|167754485|ref|ZP_02426612.1| hypothetical protein ALIPUT_02781 [Alistipes putredinis DSM 17216] gi|167659110|gb|EDS03240.1| hypothetical protein ALIPUT_02781 [Alistipes putredinis DSM 17216] Length = 429 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 33/143 (23%) Query: 9 SRNVSQEDADIS---LLRPRTLEEFTGQ-------------VEACSNLKVFIEAAKARAE 52 SR Q++ + LL+P ++EF Q V ++ K + A+ +E Sbjct: 63 SRRKEQKNTSLKFEDLLKPNEIKEFLDQYVIGQDDAKRYMSVAVYNHYKRLLHASGEASE 122 Query: 53 A-LD--HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT---- 101 LD ++L VGP G GKT +A+ +A+ L V F V+ +AG D+ ++L+ Sbjct: 123 VELDKSNILLVGPTGTGKTLMARTIAKLLNVPFTIVDATVLTEAGYVGEDVESILSRLLQ 182 Query: 102 ------NLEDRDVLFIDEIHRLS 118 L R ++FIDEI +++ Sbjct: 183 VASYDVELAQRGIVFIDEIDKIA 205 >gi|307110563|gb|EFN58799.1| hypothetical protein CHLNCDRAFT_140589 [Chlorella variabilis] Length = 841 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 543 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 602 Query: 109 LFIDEIHRLSI 119 LF DE+ +++ Sbjct: 603 LFFDELDSIAV 613 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 311 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 312 IFIDEIDSIA 321 >gi|242042265|ref|XP_002468527.1| hypothetical protein SORBIDRAFT_01g047410 [Sorghum bicolor] gi|241922381|gb|EER95525.1| hypothetical protein SORBIDRAFT_01g047410 [Sorghum bicolor] Length = 780 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 496 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARQSAPCV 555 Query: 109 LFIDEIHRLSI 119 LF DE+ +++ Sbjct: 556 LFFDELDSIAM 566 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L + Sbjct: 223 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFQEAEKNAPSI 282 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 283 IFIDEIDSIA 292 >gi|294877664|ref|XP_002768065.1| Chaperone clpB, putative [Perkinsus marinus ATCC 50983] gi|239870262|gb|EER00783.1| Chaperone clpB, putative [Perkinsus marinus ATCC 50983] Length = 955 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 33/163 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 V VGPPG+GKT+L + +A LG F R + G V +A G + L Sbjct: 466 VCLVGPPGVGKTSLCRSIAEALGKRFCRVSLGGVRDEAEIRGHRRTYIGAMLGTVLQELA 525 Query: 102 NLEDRD-VLFIDEIHRLS---------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 R+ V+ +DEI +++ + E+L P+ D +G V +L Sbjct: 526 RCGSRECVMLLDEIDKVAQPGFNSNAQAALLELLDPSQHATFRDHYLG-------VPFDL 578 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 S T I G ++ PL DR + + L Y +E+ + I +R Sbjct: 579 SCVTFICTANSAGEMSRPLIDRLEM-VELESYTLEEKREIAKR 620 >gi|221107127|ref|XP_002168308.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 768 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 526 LLFYGPPGCGKTLLAKAIATEFTINFYSVKGP 557 >gi|254466814|ref|ZP_05080225.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodobacterales bacterium Y4I] gi|206687722|gb|EDZ48204.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodobacterales bacterium Y4I] Length = 774 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 23/161 (14%) Query: 10 RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64 +NVS++DA++ ++L+ GQ +A + L I+ A+A + + + LF GP G Sbjct: 450 KNVSKDDAEVLKDLEKSLKRVVFGQDDAITALSSAIKLARAGLREPEKPIGNYLFAGPTG 509 Query: 65 LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107 +GKT +A+ +A +LGV R P D LLT+ D+ Sbjct: 510 VGKTEVAKQLADQLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 569 Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 VL +DEI + V IL M++ QL G + R+V Sbjct: 570 CVLLLDEIEKAHPDVYNILLQVMDNGQLTDHNGRTVNFRNV 610 >gi|195492546|ref|XP_002094038.1| GE21612 [Drosophila yakuba] gi|194180139|gb|EDW93750.1| GE21612 [Drosophila yakuba] Length = 931 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 687 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 718 >gi|329766718|ref|ZP_08258261.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329136973|gb|EGG41266.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 728 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 8/81 (9%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD 107 EA VL GPPG GKT LA+ VA E +F S SGP I G+ A L + E R+ Sbjct: 209 EAPKGVLLYGPPGTGKTLLAKAVANESQAHFISISGPEIMSKFYGESEARLREIFKEARE 268 Query: 108 ----VLFIDEIHRLSIIVEEI 124 ++F+DEI ++ EE+ Sbjct: 269 KAPSIIFVDEIDSIAPKREEV 289 >gi|261402851|ref|YP_003247075.1| Replication factor C [Methanocaldococcus vulcanius M7] gi|261369844|gb|ACX72593.1| Replication factor C [Methanocaldococcus vulcanius M7] Length = 544 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 19/97 (19%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQVVA----R 76 RP+TL++ GQ E LK ++E +++ H+LF GPPG+GK T +V+ R Sbjct: 10 RPKTLDDIVGQDEIVKRLKKYVEK-----KSMPHLLFSGPPGVGKCLTGDTKVIVNGKIR 64 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113 E+G S G A LTN + VL IDE Sbjct: 65 EIGDVVEKISN------GKFGATLTN--NLKVLGIDE 93 >gi|225848065|ref|YP_002728228.1| ATP-dependent protease La [Sulfurihydrogenibium azorense Az-Fu1] gi|225643281|gb|ACN98331.1| ATP-dependent protease La [Sulfurihydrogenibium azorense Az-Fu1] Length = 793 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 53/251 (21%) Query: 8 LSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L++ + ED D+ ++ R LE + LK+ + K ++ + FVGPPG+G Sbjct: 318 LAKKILDEDHYDLEKIKERILE-------YLAVLKLKKQKTKDQSIKGPILCFVGPPGVG 370 Query: 67 KTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNLEDRD-VLF 110 KT+L + +A+ LG F R + G V +A G + + ++ V+ Sbjct: 371 KTSLGKSIAKALGRKFIRISLGGVRDEAEIRGHRRTYVGALPGKIIQAIKQAGTKNPVIM 430 Query: 111 IDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 +DE+ ++ + + E+L P +D +G V +LS I R Sbjct: 431 LDEVDKIGLDFRGDPTAALLEVLDPEQNREFVDHYLG-------VPFDLSEVMFICTANR 483 Query: 163 VGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEAACEIAMRS-- 215 + ++ PL DR + IRL+ Y E+ K ++ + K GL DE E ++ Sbjct: 484 IDTISRPLLDRMEV-IRLSGYSEEEKLMIAKKYLIPKQLKENGL---DEKTVEFTDKAIQ 539 Query: 216 ---RGTPRIAG 223 RG R AG Sbjct: 540 FIIRGYTREAG 550 >gi|169343695|ref|ZP_02864694.1| ATPase, AAA family [Clostridium perfringens C str. JGS1495] gi|169298255|gb|EDS80345.1| ATPase, AAA family [Clostridium perfringens C str. JGS1495] Length = 418 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 ++RP+ LE+ GQ V + L I + + + + +F GPPG+GKTTLA +++ Sbjct: 10 IMRPKKLEDIVGQKHIVGEGTPLNKLI-----KNKNIMNCIFYGPPGVGKTTLANIISNY 64 Query: 78 LGVNFRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + I + + + + NL + +L+IDE+ + ++ L +ED + Sbjct: 65 TDKKFYKINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGR 124 Query: 134 LDLMVG--EGPSARSVKINLSRFTL 156 + L+ E P K LSR T+ Sbjct: 125 VILIASTTENPYFAIHKAILSRSTI 149 >gi|147918695|ref|YP_687582.1| replication factor C small subunit [uncultured methanogenic archaeon RC-I] gi|121687726|sp|Q0W037|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [uncultured methanogenic archaeon RC-I] Length = 322 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR LE+ G + L ++++ L H+LF GPPG+GKT A +AREL Sbjct: 12 RPRRLEDVIGHQQITRRLISYVKSGN-----LPHLLFSGPPGVGKTACAVALAREL 62 >gi|61657895|ref|NP_082053.1| peroxisome biogenesis factor 1 [Mus musculus] gi|60551059|gb|AAH90845.1| Peroxisomal biogenesis factor 1 [Mus musculus] Length = 1244 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA VVARE G+NF S GP Sbjct: 838 ILLYGPPGTGKTLLAGVVARESGMNFISIKGP 869 >gi|14325757|dbj|BAB60660.1| replication factor C subunit [Thermoplasma volcanium GSS1] Length = 330 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 37/230 (16%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78 RP++L E G+ E LK F+E + L H+LF G G GKT+ A +A EL Sbjct: 22 RPKSLSEIYGEDENIQKLKSFVEKKE-----LPHLLFAGSVGTGKTSTAIALAIELFGES 76 Query: 79 ------GVNFRSTSG--PVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 +N + +G + K D+A + +N +LF+DE +L+ + L M Sbjct: 77 WKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILFLDEADQLTAEAQAALRRTM 136 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 E + +RF A + P+Q R + +R + E +K Sbjct: 137 EMYS----------------ETTRFVF--ACNYSSKIIPPIQSR-TVVMRFRPVQDEFIK 177 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + AK G + DE+ + S G R A +L+ V E++ K Sbjct: 178 KKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAVYTSGEISPKK 227 >gi|171677199|ref|XP_001903551.1| hypothetical protein [Podospora anserina S mat+] gi|170936667|emb|CAP61326.1| unnamed protein product [Podospora anserina S mat+] Length = 570 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 18/152 (11%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP +L++ GQ N L+ IE + + ++ G G GKTT+A+ +AR +G Sbjct: 155 MRPDSLDDVFGQDLVGPNGVLRSLIETDR-----VPSMILWGGSGTGKTTIARCIARRVG 209 Query: 80 -----VNFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133 +N ST + K AA NL R ++F DEIHR S +++ +E Sbjct: 210 SRFIELNATSTGVAEVKKFFAEAANELNLTGRKTIIFCDEIHRFSKSQQDVFLKPVEAGT 269 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160 + L+ E PS + LSR FTL + T Sbjct: 270 ITLIGATTENPSFKVQAALLSRCRTFTLASLT 301 >gi|281365776|ref|NP_001163371.1| smallminded, isoform C [Drosophila melanogaster] gi|1770214|emb|CAA67594.1| smallminded [Drosophila melanogaster] gi|272455082|gb|ACZ94642.1| smallminded, isoform C [Drosophila melanogaster] Length = 943 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 698 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 729 >gi|296108938|ref|YP_003615887.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] gi|295433752|gb|ADG12923.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] Length = 483 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 I RPR+L++ G + LK +IE+ K + E +L GPPG+GKTTLA +A + Sbjct: 5 IEKYRPRSLKDVVGHEKVKERLKRWIESFIKGKKEK--PILLYGPPGVGKTTLAYALAND 62 Query: 78 LGVN 81 G + Sbjct: 63 YGFD 66 >gi|237844815|ref|XP_002371705.1| cell division protein 48, putative [Toxoplasma gondii ME49] gi|211969369|gb|EEB04565.1| cell division protein 48, putative [Toxoplasma gondii ME49] Length = 963 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ A + +L D+ V Sbjct: 684 VLFFGPPGCGKTLLAKAVANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAAPCV 743 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 744 IFFDEMDSIA 753 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL G G GKT LA+ +A E G NF + +GP V++K AG+ A L + + + Sbjct: 411 VLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSPCL 470 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 471 LFIDEIDSIA 480 >gi|166366513|ref|YP_001658786.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166088886|dbj|BAG03594.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 614 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +L++ G E LK I AK E VL VGPPG GKT A+ +A E Sbjct: 92 SLKDVGGLTEVIKELKELIAIPLKRPDLLAKLGLEPTRGVLLVGPPGTGKTLTARALAEE 151 Query: 78 LGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VLFIDEIHRLS 118 LGVN+ + GP VI+K G+ L + ++ ++FIDEI ++ Sbjct: 152 LGVNYIALVGPEVISKYYGEAEQKLRGIFEKASKNAPCIVFIDEIDSMA 200 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 24/87 (27%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----------------VIA 91 + +A+A +L GPPG GKT LA+ VA + NF S +GP + A Sbjct: 388 QTKAQAPKGILLWGPPGTGKTLLAKAVASQARANFISINGPELLSKWVGASEQAVRELFA 447 Query: 92 KAGDLAALLTNLEDRDVLFIDEIHRLS 118 KA A V+FIDEI L+ Sbjct: 448 KARQAAPC--------VVFIDEIDTLA 466 >gi|118095804|ref|XP_413821.2| PREDICTED: similar to Spermatogenesis associated 5-like 1 isoform 2 [Gallus gallus] Length = 753 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 11/75 (14%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALL---------TNL 103 + VL VGPPG+GKT L + VARE G SGP + ++ G+ L + Sbjct: 225 NGVLLVGPPGVGKTLLVKAVAREAGAYLLCISGPALYGSRPGESEENLRSVFEKGREMSC 284 Query: 104 EDRDVLFIDEIHRLS 118 E VLFIDEI L Sbjct: 285 EGPTVLFIDEIDALC 299 >gi|13542322|ref|NP_112010.1| replication factor C small subunit [Thermoplasma volcanium GSS1] gi|73920753|sp|Q977Z9|RFCS_THEVO RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit Length = 318 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 37/230 (16%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78 RP++L E G+ E LK F+E + L H+LF G G GKT+ A +A EL Sbjct: 10 RPKSLSEIYGEDENIQKLKSFVEKKE-----LPHLLFAGSVGTGKTSTAIALAIELFGES 64 Query: 79 ------GVNFRSTSG--PVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 +N + +G + K D+A + +N +LF+DE +L+ + L M Sbjct: 65 WKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILFLDEADQLTAEAQAALRRTM 124 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 E + +RF A + P+Q R + +R + E +K Sbjct: 125 EMYS----------------ETTRFVF--ACNYSSKIIPPIQSR-TVVMRFRPVQDEFIK 165 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 + AK G + DE+ + S G R A +L+ V E++ K Sbjct: 166 KKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAVYTSGEISPKK 215 >gi|158706385|sp|Q5BL07|PEX1_MOUSE RecName: Full=Peroxisome biogenesis factor 1; AltName: Full=Peroxin-1 gi|148682662|gb|EDL14609.1| peroxisome biogenesis factor 1 [Mus musculus] Length = 1284 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA VVARE G+NF S GP Sbjct: 878 ILLYGPPGTGKTLLAGVVARESGMNFISIKGP 909 >gi|198431165|ref|XP_002120445.1| PREDICTED: similar to peroxin1 [Ciona intestinalis] Length = 1270 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 33/75 (44%), Positives = 40/75 (53%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD-- 107 EA VL GPPG GKT +A VVA E +NF S GP V++K G A + +L R Sbjct: 863 EANSGVLLFGPPGCGKTLIAGVVANECDLNFISIKGPEVLSKYIGASEAAVRDLFSRAKA 922 Query: 108 ----VLFIDEIHRLS 118 VLF DE L+ Sbjct: 923 AAPCVLFFDEFDSLA 937 >gi|170763967|ref|ZP_02636474.2| ATPase, AAA family [Clostridium perfringens B str. ATCC 3626] gi|170711102|gb|EDT23284.1| ATPase, AAA family [Clostridium perfringens B str. ATCC 3626] Length = 418 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 ++RP+ LE+ GQ V + L I + + + + +F GPPG+GKTTLA +++ Sbjct: 10 IMRPKKLEDIVGQKHIVGEGTPLNKLI-----KNKNIMNCIFYGPPGVGKTTLANIISNY 64 Query: 78 LGVNFRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + I + + + + NL + +L+IDE+ + ++ L +ED + Sbjct: 65 TDKKFYKINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGR 124 Query: 134 LDLMVG--EGPSARSVKINLSRFTL 156 + L+ E P K LSR T+ Sbjct: 125 VILIASTTENPYFAIHKAILSRSTI 149 >gi|170764155|ref|ZP_02633248.2| ATPase, AAA family [Clostridium perfringens E str. JGS1987] gi|170661394|gb|EDT14077.1| ATPase, AAA family [Clostridium perfringens E str. JGS1987] Length = 418 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%) Query: 21 LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 ++RP+ LE+ GQ V + L I + + + + +F GPPG+GKTTLA +++ Sbjct: 10 IMRPKKLEDIVGQKHIVGEGTPLNKLI-----KNKNIINCIFYGPPGVGKTTLANIISNY 64 Query: 78 LGVNFRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + I + + + + NL + +L+IDE+ + ++ L +ED + Sbjct: 65 TDKKFYKINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGR 124 Query: 134 LDLMVG--EGPSARSVKINLSRFTL 156 + L+ E P K LSR T+ Sbjct: 125 VILIASTTENPYFAIHKAILSRSTI 149 >gi|124485944|ref|YP_001030560.1| beta-lactamase domain-containing protein [Methanocorpusculum labreanum Z] gi|124363485|gb|ABN07293.1| AAA family ATPase, CDC48 subfamily [Methanocorpusculum labreanum Z] Length = 810 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 8/75 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E G F + SGP +I+K GD L + ++ + Sbjct: 240 VLLYGPPGTGKTLIARAVANEAGAYFDTISGPEIISKYYGDSEEKLREIFEKAEENAPSI 299 Query: 109 LFIDEIHRLSIIVEE 123 +FIDEI ++ EE Sbjct: 300 IFIDEIDSIAPKREE 314 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/31 (58%), Positives = 19/31 (61%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 L GPPG GKT LA+ VA E NF S GP Sbjct: 513 LMFGPPGTGKTLLAKAVANESECNFISVKGP 543 >gi|24660075|ref|NP_523959.2| smallminded, isoform A [Drosophila melanogaster] gi|7295244|gb|AAF50566.1| smallminded, isoform A [Drosophila melanogaster] Length = 944 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 699 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 730 >gi|295054734|gb|ADF59564.1| MIP20544p [Drosophila melanogaster] Length = 910 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 665 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 696 >gi|260889961|ref|ZP_05901224.1| stage V sporulation protein K [Leptotrichia hofstadii F0254] gi|260860567|gb|EEX75067.1| stage V sporulation protein K [Leptotrichia hofstadii F0254] Length = 363 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 46/216 (21%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFR------STSGPVIAKAGDLAALLTNLEDR 106 H+ F G PG GKTT+A+++ R +LG+ R S + + G A + N+ ++ Sbjct: 143 HLSFTGNPGTGKTTVARIIGRIYKQLGLLSRGHFIEVSRTDLIAGYQGQTALKVKNVIEK 202 Query: 107 ---DVLFIDEIHRLS-----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 VLFIDE + ++ I E L A+ED++ DL+V + +K S Sbjct: 203 AKGGVLFIDEAYSITENEQSDSYGRECITE--LTKALEDYRNDLVVIVAGYSEPMKNFFS 260 Query: 153 RFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC-- 209 +NP L+ RF I Y ++L I+ K +T++A Sbjct: 261 --------------SNPGLKSRFNTFIEFEDYNTKELLEILISMCKNNDYDLTEKAKVKL 306 Query: 210 ----EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 E + ++ GR++R + D + HA+ + Sbjct: 307 NGFFETELENKKENFSNGRMVRNIYDDLVMNHARRV 342 >gi|221501587|gb|EEE27357.1| cell division protein, putative [Toxoplasma gondii VEG] Length = 963 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ A + +L D+ V Sbjct: 684 VLFFGPPGCGKTLLAKAVANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAAPCV 743 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 744 IFFDEMDSIA 753 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL G G GKT LA+ +A E G NF + +GP V++K AG+ A L + + + Sbjct: 411 VLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSPCL 470 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 471 LFIDEIDSIA 480 >gi|221480890|gb|EEE19311.1| cell division protein, putative [Toxoplasma gondii GT1] Length = 963 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ A + +L D+ V Sbjct: 684 VLFFGPPGCGKTLLAKAVANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAAPCV 743 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 744 IFFDEMDSIA 753 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL G G GKT LA+ +A E G NF + +GP V++K AG+ A L + + + Sbjct: 411 VLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSPCL 470 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 471 LFIDEIDSIA 480 >gi|159025964|emb|CAO88754.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 614 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +L++ G E LK I AK E VL VGPPG GKT A+ +A E Sbjct: 92 SLKDVGGLTEVIKELKELIAIPLKRPDLLAKLGLEPTRGVLLVGPPGTGKTLTARALAEE 151 Query: 78 LGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VLFIDEIHRLS 118 LGVN+ + GP VI+K G+ L + ++ ++FIDEI ++ Sbjct: 152 LGVNYIALVGPEVISKYYGEAEQKLRGIFEKASKNAPCIVFIDEIDSMA 200 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 26/41 (63%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 + +A+A +L GPPG GKT LA+ VA + NF S +GP Sbjct: 388 QTKAQAPKGILLWGPPGTGKTLLAKAVASQARANFISINGP 428 >gi|302874689|ref|YP_003843322.1| MgsA AAA+ ATPase-like [Clostridium cellulovorans 743B] gi|307690699|ref|ZP_07633145.1| recombination factor protein RarA [Clostridium cellulovorans 743B] gi|302577546|gb|ADL51558.1| MgsA AAA+ ATPase-like [Clostridium cellulovorans 743B] Length = 424 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 10/139 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+ +EE GQ K+ + ++ + + +++F GPPG GKTT+A ++A+ Sbjct: 8 LRPQVIEEVVGQSHLIGQNKILTKIIES--QHIPNMIFYGPPGCGKTTVANIIAKATNKR 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 F + A D+ ++ L+ +L++DEI + ++ L +E+ + L Sbjct: 66 FFKLNA-TNASTKDIKEIILELDTFMGAKGVLLYLDEIQNFNKKQQQSLLEFIENGSITL 124 Query: 137 MVG--EGPSARSVKINLSR 153 + E P LSR Sbjct: 125 IASTTENPYFYVYNAILSR 143 >gi|255074337|ref|XP_002500843.1| predicted protein [Micromonas sp. RCC299] gi|226516106|gb|ACO62101.1| predicted protein [Micromonas sp. RCC299] Length = 818 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------EDRDV 108 VL GPPG GKTTLA +ARE GV F S + P V +G+ A + L + Sbjct: 208 VLLHGPPGCGKTTLAHAIAREAGVPFFSIAAPEIVAGVSGESEAKIRQLFAAAAAAAPSI 267 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 268 VFIDEV 273 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 19/32 (59%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ A E NF S GP Sbjct: 514 VLLYGPPGCGKTLVAKATANEANANFISIKGP 545 >gi|225568848|ref|ZP_03777873.1| hypothetical protein CLOHYLEM_04927 [Clostridium hylemonae DSM 15053] gi|225162347|gb|EEG74966.1| hypothetical protein CLOHYLEM_04927 [Clostridium hylemonae DSM 15053] Length = 426 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 28/130 (21%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGP 62 ADI+LL+P +++F GQ EA L V + R A ++L +GP Sbjct: 68 ADINLLKPEEIKDFLDEYVIGQDEAKKVLSVAVYNHYKRIMAQKDLGVELNKSNILMLGP 127 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV------- 108 G GKT LAQ +A+ L V F + +AG + + N+ D DV Sbjct: 128 TGCGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDVERAEYGI 187 Query: 109 LFIDEIHRLS 118 ++IDEI +++ Sbjct: 188 IYIDEIDKIT 197 >gi|145503568|ref|XP_001437759.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124404914|emb|CAK70362.1| unnamed protein product [Paramecium tetraurelia] Length = 691 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A E+ +NF S GP Sbjct: 468 ILFFGPPGTGKTLLAKCIACEMKMNFISVKGP 499 >gi|148655610|ref|YP_001275815.1| ATP-dependent protease La [Roseiflexus sp. RS-1] gi|148567720|gb|ABQ89865.1| ATP-dependent protease La [Roseiflexus sp. RS-1] Length = 823 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 32/160 (20%) Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNL 103 FVGPPG+GKT+L Q +AR LG F R + G V +A G L L Sbjct: 366 FVGPPGVGKTSLGQSIARALGRQFARMSLGGVRDEAELRGFRRTYIGSQPGRLIQELRRA 425 Query: 104 EDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 D V+ +DEI +L + + E+L P D D + +V +LS+ Sbjct: 426 GTSDPVILLDEIDKLGHDYRGDPAAALLEVLDPEQNDTFTDHYL-------NVPFDLSKV 478 Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 IA + + L+DR + I L+ Y +++ I QR Sbjct: 479 LFIATANTMDTVPPALRDRMEV-IELSGYTVDEKVHIAQR 517 >gi|45552965|ref|NP_996009.1| smallminded, isoform B [Drosophila melanogaster] gi|45446020|gb|AAS65065.1| smallminded, isoform B [Drosophila melanogaster] Length = 850 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 605 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 636 >gi|255761622|gb|ACU32854.1| apicoplast cell division cycle 48 protein [Toxoplasma gondii] Length = 1044 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ A + +L D+ V Sbjct: 765 VLFFGPPGCGKTLLAKAVANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAAPCV 824 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 825 IFFDEMDSIA 834 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL G G GKT LA+ +A E G NF + +GP V++K AG+ A L + + + Sbjct: 492 VLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSPCL 551 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 552 LFIDEIDSIA 561 >gi|288931073|ref|YP_003435133.1| ATPase AAA [Ferroglobus placidus DSM 10642] gi|288893321|gb|ADC64858.1| AAA ATPase central domain protein [Ferroglobus placidus DSM 10642] Length = 352 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 27/201 (13%) Query: 27 LEEFTGQVEACSNLKVFIEAAKARAE----ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 L++ GQ EA ++ +E K + A +VLF GPPG GKT +A+ +A E V F Sbjct: 104 LDDVVGQEEAKRKARIILEYLKNPEKFGKWAPKNVLFYGPPGTGKTMMAKALANEAKVPF 163 Query: 83 RSTSGP--VIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQL 134 S + G+ A + L +R ++F+DE ++ L + +D + Sbjct: 164 LSVKSTRLIGEHVGEGARKIHELYERAKQIAPCIVFLDEFDSIA------LDRSYQDLRG 217 Query: 135 DLMVGEGPSARSVKIN-LSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 D V E +A +++ + R IAAT R+ L ++ RF I IE+ + Sbjct: 218 D--VSEIVNALLTELDGIERREGICTIAATNRIEFLDPSIRSRFEEEIEFTLPGIEERRE 275 Query: 191 IVQRGAKLTGLAVT---DEAA 208 I +R + L V DE A Sbjct: 276 IFERNLRDFPLKVEVNLDEVA 296 >gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans] gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans] Length = 356 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 12/71 (16%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ LE+ T Q A + LK +++A L H+LF GPPG GKT+ + +EL Sbjct: 31 RPKKLEDVTAQDHAVNVLKKTLQSAN-----LPHMLFYGPPGTGKTSTILALTKEL---- 81 Query: 83 RSTSGPVIAKA 93 GP + K+ Sbjct: 82 ---YGPALMKS 89 >gi|48477528|ref|YP_023234.1| cell division cycle protein 48 [Picrophilus torridus DSM 9790] gi|48430176|gb|AAT43041.1| cell division cycle protein 48 [Picrophilus torridus DSM 9790] Length = 744 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 16/85 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108 VL GPPG GKT +A+ VA E G NF + +GP I L + E+ + + Sbjct: 226 VLLSGPPGTGKTLIAKAVANESGANFYAINGPEIMSKYYGQSEQKLREIFQKAEESEPSI 285 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ 133 +FIDEI ++ P ED Q Sbjct: 286 IFIDEIDSIA--------PKREDVQ 302 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 20/33 (60%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 L GPPG GKT LA+ VA E NF S GP + Sbjct: 504 LLYGPPGTGKTLLAKAVANESNANFISIKGPEV 536 >gi|297809595|ref|XP_002872681.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] gi|297318518|gb|EFH48940.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] Length = 602 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 21/196 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA--------GDLAALLTNLEDRD 107 VLF GPPG GKT+ A+V+A + G+ V++K GD+ + L D Sbjct: 366 VLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGDVFSQANELPDGA 425 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++F+DEI +I + ++ A L +++ + K + +IAAT R L Sbjct: 426 IIFLDEIDAFAISRDSEMHEATRRV-LSVLLRQIDGFEQDK----KVVVIAATNRKQDLD 480 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 L RF I + +++ + I+ + AK + E+ ++ T ++GR +R Sbjct: 481 PALISRFDSMIMFDLPDLQTRQEIITQYAKQL-------SKPELVQLAQATEAMSGRDIR 533 Query: 228 RVRDFAEVAHAKTITR 243 V AE A + R Sbjct: 534 DVCQGAERTWASKLIR 549 >gi|291532621|emb|CBL05734.1| ATP-dependent protease, Lon family [Megamonas hypermegale ART12/1] Length = 471 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 115/326 (35%), Gaps = 63/326 (19%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + LLRP L E GQ A LK AK + H++ GPPG+GKTT A++V +E Sbjct: 1 MELLRPENLSEIIGQERAIKALK-----AKLSSPYPQHLILYGPPGVGKTTAARLVLQEA 55 Query: 79 GVN----------FRSTSGPVI--AKAGDLAALLTNLED-------RD------------ 107 F T G + G LL ++ D RD Sbjct: 56 CTQPHTPFNADAPFVETDGTTLRYDPRGIANPLLGSVHDPIYQGARRDLADSGIPEPKPG 115 Query: 108 --------VLFIDEIHRLSIIVEEILYPAMED----FQLDLMVGEGPSARSVKINL---- 151 +LFIDEI L ++ L +ED F P+ L Sbjct: 116 LVTDAHGGILFIDEIGELDDTLQNELLKVLEDKRAYFDSAYFEPNDPNVPEYIKKLFTEG 175 Query: 152 --SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA- 208 + F LI ATTR NP I + ++TIV A + DE A Sbjct: 176 APADFVLIGATTRDSYYLNPALRSRCAEIYFEPLTPKHIETIVLNAAHKLYAKLDDEVAQ 235 Query: 209 --CEIAMRSRGTPRI-----AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 E + R I + L+R+ D + K +A + L I K D Sbjct: 236 IISEYTIEGRKAINILADAYSNALVRQENDMDNILITKEDIYTVAQVSRLTPFITKKASD 295 Query: 262 QLDL-RYLTMIARNFGGGPVGIETIS 286 ++ + + F G + IE I+ Sbjct: 296 TSEIGKIFGLGVAGFIGSVIEIEAIT 321 >gi|118095806|ref|XP_001232157.1| PREDICTED: similar to Spermatogenesis associated 5-like 1 isoform 1 [Gallus gallus] Length = 749 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 11/75 (14%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALL---------TNL 103 + VL VGPPG+GKT L + VARE G SGP + ++ G+ L + Sbjct: 225 NGVLLVGPPGVGKTLLVKAVAREAGAYLLCISGPALYGSRPGESEENLRSVFEKGREMSC 284 Query: 104 EDRDVLFIDEIHRLS 118 E VLFIDEI L Sbjct: 285 EGPTVLFIDEIDALC 299 >gi|257092782|ref|YP_003166423.1| ATP-dependent protease La [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045306|gb|ACV34494.1| ATP-dependent protease La [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 790 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L Q +AR LG F R++ G +A G++ + Sbjct: 369 LCFVGPPGVGKTSLGQSIARALGRKFVRASLGGCHDEAEIRGHRRTYIGALPGNIIQAIR 428 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R V+ +DEI +L S + E+L P + D + ++ +LS Sbjct: 429 KAGSRGCVMMLDEIDKLGSGIQGDPSAALLEVLDPEQNNTFRDNYL-------ALPYDLS 481 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 R I + + PL+DR I I+L Y E+ + I +R Sbjct: 482 RMLFITTANVLDNIPGPLRDRMEI-IQLPGYTQEEKREIARR 522 >gi|289548377|ref|YP_003473365.1| ATP-dependent protease La [Thermocrinis albus DSM 14484] gi|289181994|gb|ADC89238.1| ATP-dependent protease La [Thermocrinis albus DSM 14484] Length = 786 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 58/260 (22%), Positives = 104/260 (40%), Gaps = 46/260 (17%) Query: 47 AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIA 91 K ++ A+ + FVGPPG+GKT+L + +A LG F S V A Sbjct: 356 TKGKSSAVQILCFVGPPGVGKTSLGRSIAEALGRKFVRISLGGIRDEAEIRGHRRTYVGA 415 Query: 92 KAGDLAALLTNLEDRDVLFI-DEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGP 142 G + L ++ L + DE+ ++S+ + E+L P +DL +G Sbjct: 416 MPGRIMQALKQAGTKNPLIVLDEVDKISVSFQGDPAAALLEVLDPEQNKQFVDLYIG--- 472 Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202 + +LS I R + PL DR + I L+ Y E+ K + + + L Sbjct: 473 ----LPFDLSEVFFICTANRADTIPRPLLDRMEV-INLSGYS-EEEKVFIAKNHLIPRL- 525 Query: 203 VTDEAACEIAMRSRGTPRIAGR---LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 + M G + + L+ +R + + + + R+I+ L +LA+ ++ Sbjct: 526 --------LPMHGFGKDEVVFKDDALMEIIRGYTRESGVRNLQRQIS-TVLRKLALRRLK 576 Query: 260 FDQLDLRYLTMIARNFGGGP 279 + +NF G P Sbjct: 577 GENPPFEVTLQDVKNFLGVP 596 >gi|226228183|ref|YP_002762289.1| ATP-dependent Lon protease [Gemmatimonas aurantiaca T-27] gi|226091374|dbj|BAH39819.1| ATP-dependent Lon protease [Gemmatimonas aurantiaca T-27] Length = 847 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 47/202 (23%) Query: 47 AKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-----------------RSTSGP 88 AK+RA A +L F GPPG+GKT++A+ +AR LG + R T Sbjct: 386 AKSRAMARGPILLFNGPPGVGKTSIAKSIARSLGREYVRVALGGARDEADIRGHRRTY-- 443 Query: 89 VIAKAGDLAALLTNLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVG 139 V A G + + R+ +F +DE+ +L S + E+L PA D D +G Sbjct: 444 VGAMPGRIIQGMKQAGSRNPVFLLDEVDKLGQSYQGDPSSALLEVLDPAQNDSFTDHYLG 503 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV------- 192 V +LS IA + + + PL DR + + + Y + K I Sbjct: 504 -------VPFDLSEVLFIATSNFIQNIPGPLLDRMEV-VDFSGYTEREKKEIALSYLIPR 555 Query: 193 ---QRGAKLTGLAVTDEAACEI 211 + G GL+ TD+A ++ Sbjct: 556 QLEESGLAGRGLSFTDDAVMKV 577 >gi|145243766|ref|XP_001394395.1| werner helicase interacting protein [Aspergillus niger CBS 513.88] gi|134079076|emb|CAK48385.1| unnamed protein product [Aspergillus niger] Length = 513 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 13/130 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR ++ GQ + L+ IE + L +++ GPPG GKTT+A+++ + Sbjct: 110 VRPRCFDDIVGQKSLIGPNGTLRRLIEQ-----DELPNLILWGPPGSGKTTIARIIGPMM 164 Query: 79 --GVNFRSTSGPVIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 V S+ + + D+ T+ ++ ++F DEIHRL+ ++I AM ++ Sbjct: 165 RRKVYEISSLTTITTEYRDIVTKATHDGRNKSIIFCDEIHRLTRPQQDIFLDAMRRNKIT 224 Query: 136 LM--VGEGPS 143 L+ E PS Sbjct: 225 LIGATTENPS 234 >gi|167465551|ref|ZP_02330640.1| AAA ATPase, central domain protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 559 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP +LE+ GQ E LK + + HVL GPPG+GKT A+VV E N Sbjct: 51 RPSSLEDIVGQKEGLKALKAALCGPNPQ-----HVLIYGPPGVGKTAAARVVLEEAKKNI 105 Query: 83 RS 84 +S Sbjct: 106 KS 107 >gi|124027197|ref|YP_001012517.1| ATPases of AAA+ class, SpoVK, putative cell division [Hyperthermus butylicus DSM 5456] gi|123977891|gb|ABM80172.1| ATPases of AAA+ class, SpoVK, putative cell division [Hyperthermus butylicus DSM 5456] Length = 737 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 17/118 (14%) Query: 24 PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR E G +E A ++ +E E +H +L GPPG+GKT LA+ + Sbjct: 186 PRVTWEDIGDLEEAKEKIREIVELPMKHPELFEHLGIEPPKGILLYGPPGVGKTLLAKAL 245 Query: 75 ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 A E+G F + +GP I G+ L + + ++FIDEI ++ EE+ Sbjct: 246 ANEIGAYFIAINGPEIMSKYYGESEQRLREIFEEAEKNAPSIIFIDEIDAIAPRREEV 303 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ A E G NF + GP I Sbjct: 502 ILLFGPPGTGKTLLAKAAATESGANFIAVRGPEI 535 >gi|6760428|gb|AAF28347.1| calmodulin-binding protein [Arabidopsis thaliana] gi|6760430|gb|AAF28348.1| calmodulin-binding protein [Arabidopsis thaliana] Length = 1022 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/34 (61%), Positives = 24/34 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT+LA+ AR GVNF S +GP I Sbjct: 421 VLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEI 454 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 16/111 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77 E+ GQ E + L +E + +A + L GPPG KT +A+ VA E Sbjct: 722 NWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASE 781 Query: 78 LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSII 120 +NF + GP + G+ + +L + ++F DEI L+ I Sbjct: 782 AKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASI 832 >gi|332025898|gb|EGI66054.1| ATPase WRNIP1 [Acromyrmex echinatior] Length = 552 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 15/149 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------ 75 +RP +L F GQ + E + + E + +L+ GPPG GKT+LA V+A Sbjct: 109 MRPTSLLNFVGQRHILGPRTILSELLQ-KGEIPNMILW-GPPGCGKTSLANVIAHMCKND 166 Query: 76 --RELGVNFRSTSGPVIAKAGDLAALLTN---LEDRDVLFIDEIHRLSIIVEEILYPAME 130 R+L S + + + ++ ++ +N ++F+DEIHR + + +++ P +E Sbjct: 167 ASRKLRYVKLSAAMAGVQEVKEVISIASNHAKYAQHTIVFMDEIHRFNKMQQDVFLPHVE 226 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157 + L+ E PS LSR +I Sbjct: 227 SGIITLIGATTENPSFSLNSALLSRCRVI 255 >gi|303231330|ref|ZP_07318065.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-049-V-Sch6] gi|302514010|gb|EFL56017.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-049-V-Sch6] Length = 763 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 119/292 (40%), Gaps = 39/292 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+T + GQ + L I R + + H LF GP G GKT++A++ AR + Sbjct: 11 RPQTFTDVVGQHQVSDTLMRAI-----REDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE-----IHRLSIIVEEILYPAMED----F 132 T P + + + + DVL ID I + + E + + +E F Sbjct: 66 HGPTDHP--CNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVF 123 Query: 133 QLD---LMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-- 185 +D ++ E +A ++++ I ATT + L + R R F I Sbjct: 124 IIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQ---RYTFRRITS 180 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +D+ +Q A G A+ D AA IA+ + G R A +L + A + EI Sbjct: 181 DDIAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMA--------SGEI 232 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 A + L +G D + A + G GP ++ I LSE RD + Sbjct: 233 TPAVVEEL----IGLVSKDWIIKFLSALHNGDGPAVLKYIQNALSEGRDGAQ 280 >gi|253681305|ref|ZP_04862103.1| cell division protease FtsH [Clostridium botulinum D str. 1873] gi|253562543|gb|EES91994.1| cell division protease FtsH [Clostridium botulinum D str. 1873] Length = 657 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78 T +E G E + L+ ++ KA + LD +L VGPPG GKT LA+ VA E Sbjct: 160 TFKEVAGADEEKAELEEIVDFLKAPNKYLDMGARIPKGILLVGPPGTGKTLLAKAVAGEA 219 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 220 GVPFFSISG 228 >gi|218512936|ref|ZP_03509776.1| recombination factor protein RarA [Rhizobium etli 8C-3] Length = 93 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 8/68 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL E TGQ LK IE+ +L ++F GPPG GKTT+A++++ E Sbjct: 24 LRPKTLAEVTGQEHLTGEDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78 Query: 79 GVNFRSTS 86 G S S Sbjct: 79 GAGPSSIS 86 >gi|198457521|ref|XP_001360696.2| GA15351 [Drosophila pseudoobscura pseudoobscura] gi|198136008|gb|EAL25271.2| GA15351 [Drosophila pseudoobscura pseudoobscura] Length = 801 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDAIA 307 >gi|195162967|ref|XP_002022325.1| GL26363 [Drosophila persimilis] gi|194104286|gb|EDW26329.1| GL26363 [Drosophila persimilis] Length = 909 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 664 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 695 >gi|193617621|ref|XP_001949588.1| PREDICTED: transitional endoplasmic reticulum ATPase TER94-like [Acyrthosiphon pisum] Length = 804 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARAAAPCV 571 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 572 LFFDELDSIA 581 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ D + Sbjct: 239 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADRNSPAI 298 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 299 IFIDELDAIA 308 >gi|15228991|ref|NP_191228.1| CIP111 (CAM INTERACTING PROTEIN 111); ATPase/ calmodulin binding [Arabidopsis thaliana] gi|9662988|emb|CAC00732.1| calmodulin-binding protein [Arabidopsis thaliana] gi|332646031|gb|AEE79552.1| Cam interacting protein 111 [Arabidopsis thaliana] Length = 1022 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/34 (61%), Positives = 24/34 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT+LA+ AR GVNF S +GP I Sbjct: 421 VLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEI 454 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 16/111 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77 E+ GQ E + L +E + +A + L GPPG KT +A+ VA E Sbjct: 722 NWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASE 781 Query: 78 LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSII 120 +NF + GP + G+ + +L + ++F DEI L+ I Sbjct: 782 AKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASI 832 >gi|85110657|ref|XP_963567.1| hypothetical protein NCU08706 [Neurospora crassa OR74A] gi|9453819|emb|CAB99387.1| conserved hypothetical protein [Neurospora crassa] gi|28925252|gb|EAA34331.1| hypothetical protein NCU08706 [Neurospora crassa OR74A] Length = 622 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP +L++ GQ N L+ IE + + ++ G G GKTT+A+ +A+ G Sbjct: 184 MRPGSLDDVFGQDLVGPNGVLRALIETDR-----VPSMILWGGSGTGKTTIARCIAQRTG 238 Query: 80 VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F ++SG K G+ A L R ++F DEIHR + ++I +E Sbjct: 239 SRFIELNATSSGVAECKKYFGEAANELHLTGRRTIIFCDEIHRFTKAQQDIFLKPVEAGT 298 Query: 134 LDLM--VGEGPSARSVKINLSR---FTL 156 + L+ E PS + V LSR FTL Sbjct: 299 ITLIGATTENPSFKVVPALLSRCRTFTL 326 >gi|328767253|gb|EGF77303.1| hypothetical protein BATDEDRAFT_91654 [Batrachochytrium dendrobatidis JAM81] Length = 326 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 6/60 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+TL E +GQ E + L I+ + L H+L GPPG GKT++ +AR+L G N Sbjct: 15 RPKTLSEISGQNEVVAVLSNTIQT-----QNLPHLLLYGPPGTGKTSIILALARQLYGAN 69 >gi|312377117|gb|EFR24029.1| hypothetical protein AND_11685 [Anopheles darlingi] Length = 834 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEI 114 +FIDEI Sbjct: 298 IFIDEI 303 >gi|262272122|gb|ACY40036.1| AT24528p [Drosophila melanogaster] Length = 829 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 539 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 598 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 599 LFFDELDSIA 608 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 266 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 325 Query: 109 LFIDEI 114 +FIDEI Sbjct: 326 IFIDEI 331 >gi|194757830|ref|XP_001961165.1| GF11135 [Drosophila ananassae] gi|190622463|gb|EDV37987.1| GF11135 [Drosophila ananassae] Length = 801 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDAIA 307 >gi|194858161|ref|XP_001969115.1| TER94 [Drosophila erecta] gi|27374245|gb|AAO01004.1| CG2331-PA [Drosophila erecta] gi|190660982|gb|EDV58174.1| TER94 [Drosophila erecta] Length = 801 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEI 114 +FIDEI Sbjct: 298 IFIDEI 303 >gi|296394109|ref|YP_003658993.1| ATPase AAA [Segniliparus rotundus DSM 44985] gi|296181256|gb|ADG98162.1| AAA ATPase central domain protein [Segniliparus rotundus DSM 44985] Length = 479 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 25/147 (17%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR + E GQ + L+ ++ + V+ GPPG GKTT+A +++ Sbjct: 45 MRPRDVAEVLGQDHLLGPGRPLRRLVDG-----HGVASVVLHGPPGTGKTTIASLLSAAT 99 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLED---------RDVLFIDEIHRLSIIVEEILYPAM 129 G F + S A + + +ED R VLFIDE+HR S ++ L A+ Sbjct: 100 GREFVALS----ALTAGVKEVREVIEDSRMRLAAGRRTVLFIDEVHRFSKTQQDALLAAV 155 Query: 130 EDFQLDLMVG---EGPSARSVKINLSR 153 E Q+ L+V E P V LSR Sbjct: 156 E-HQIVLLVAATTENPGFAVVSPLLSR 181 >gi|290559904|gb|EFD93226.1| replication factor C small subunit [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 313 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 36/231 (15%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78 RP++ +E GQ + LK A + + + H++ GPPG+GKTT A V+A+E+ Sbjct: 9 RPQSFDEVIGQKDIVEKLK-----AMSSKKEIQHMILSGPPGVGKTTCAVVLAKEVFGST 63 Query: 79 -GVNFRSTSGP-------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 NF + + K + A ++ DE L+ ++ L ME Sbjct: 64 WNQNFIELNASDDRKLSVIQGKVKEFARTKPIDSPFKIILFDEADSLTQEAQQALRRMME 123 Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 ++ + RF L + + ++ PLQ R I +R D+ Sbjct: 124 EYS----------------STCRF-LFSVNYQSNII-EPLQSRCAI-LRFQPLSKTDVTK 164 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 + R A+ L + EA + SRG R L++ + + + AK + Sbjct: 165 FIDRIAEKEKLEIDSEAKDALEYVSRGDLRNLVNLMQSLANVSNKIDAKAV 215 >gi|255076393|ref|XP_002501871.1| lon protease [Micromonas sp. RCC299] gi|226517135|gb|ACO63129.1| lon protease [Micromonas sp. RCC299] Length = 904 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 34/193 (17%) Query: 9 SRNVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGL 65 S+ + + +++++ R + EE G + + ++ + R EA +L F GPPG+ Sbjct: 361 SKEAAADAHEVAMVEARAVLDEEHYGLDKVKDRIVEYLAVRRLRPEARPPILCFTGPPGV 420 Query: 66 GKTTLAQVVARELGVNFRSTS-GPVIAKA--------------GDLAALLTNLEDRD-VL 109 GKTTLA+ +AR L F+ S G V +A G L A L +D VL Sbjct: 421 GKTTLARSIARVLSRPFQRISLGGVRDEADIRGHRRTYIASMPGRLIAGLRRCGVKDPVL 480 Query: 110 FIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161 +DE+ ++ + + E+L P D +G V +LSR T +A Sbjct: 481 LLDELDKMGADSRGDPAAAMLEVLDPEQNHAFTDHYLG-------VPFDLSRVTFLATAN 533 Query: 162 RVGLLTNPLQDRF 174 + PL+DR Sbjct: 534 DPRTIPGPLRDRM 546 >gi|328874863|gb|EGG23228.1| replication factor C subunit [Dictyostelium fasciculatum] Length = 368 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%) Query: 2 MDREGLLSRNVSQEDAD----ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 MD E L + Q D + RP++L+E + + I+ +L H+ Sbjct: 3 MDEEYLRKQTKEQRIHDSLPWVEKYRPKSLKELISHEDIIDTITKLIDK-----NSLPHL 57 Query: 58 LFVGPPGLGKTTLAQVVAREL-GVNF 82 LF GPPG GKT+ Q VAR+L G N+ Sbjct: 58 LFYGPPGTGKTSTIQAVARKLYGDNY 83 >gi|321471444|gb|EFX82417.1| hypothetical protein DAPPUDRAFT_316737 [Daphnia pulex] Length = 759 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 519 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 550 >gi|288574502|ref|ZP_06392859.1| AAA ATPase central domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570243|gb|EFC91800.1| AAA ATPase central domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 423 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 23/168 (13%) Query: 22 LRPRTLEEFTGQVEA---CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL----AQVV 74 +RP +L+++ G ++ +L+V +E + + GPPG+GKT L A V Sbjct: 12 MRPSSLDQYIGHLDVMGPTGSLRVLLEKG-----VVPSCILYGPPGVGKTALVRLMASVT 66 Query: 75 AREL-GVNFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 REL +N S + + AA L R V F+DEI+ + + L P++E Sbjct: 67 DRELFEINAVSAKVSQLRDLIEKAARFKALSGRSAVAFVDEIYHFNKGQQNALLPSVEKG 126 Query: 133 QLDLMVG---EGPSARSVKINLSR---FTL--IAATTRVGLLTNPLQD 172 + ++VG E P K LSR F+L + VG++ N L D Sbjct: 127 DV-VLVGTTTENPWFEINKTLLSRLLVFSLKPLEKDDLVGIMNNALSD 173 >gi|224127332|ref|XP_002329251.1| predicted protein [Populus trichocarpa] gi|222870705|gb|EEF07836.1| predicted protein [Populus trichocarpa] Length = 776 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 498 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCV 557 Query: 109 LFIDEIHRLSI 119 +F DE+ ++I Sbjct: 558 IFFDELDSIAI 568 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ +A E G F +GP I AG+ L E+ + + Sbjct: 225 ILLYGPPGTGKTLIARAIANETGAFFFCINGPEIMSKMAGESEQNLRKAFEEAEKNAPAI 284 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 285 VFIDEIDSIA 294 >gi|332372578|gb|AEE61431.1| unknown [Dendroctonus ponderosae] Length = 424 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 127 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 186 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 187 LFFDELDSIA 196 >gi|198464466|ref|XP_001353233.2| GA21172 [Drosophila pseudoobscura pseudoobscura] gi|198149730|gb|EAL30736.2| GA21172 [Drosophila pseudoobscura pseudoobscura] Length = 933 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 688 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 719 >gi|188996065|ref|YP_001930316.1| ATP-dependent protease La [Sulfurihydrogenibium sp. YO3AOP1] gi|302425073|sp|B2V6N0|LON_SULSY RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|188931132|gb|ACD65762.1| ATP-dependent protease La [Sulfurihydrogenibium sp. YO3AOP1] Length = 800 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 45/224 (20%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAK 92 +E + LK+ E++K ++ + FVGPPG+GKT+L + +A+ L F R + G V + Sbjct: 343 LEYLAVLKLKKESSKDKSIKGPILCFVGPPGVGKTSLGRSIAKALNRKFVRISLGGVRDE 402 Query: 93 A--------------GDLAALLTNLEDRD-VLFIDEIHRLSI--------IVEEILYPAM 129 A G + + ++ V+ +DE+ ++ + + E+L P Sbjct: 403 AEIRGHRRTYVGAMPGKIIQAIKQARTKNPVIMLDEVDKIGLDFRGDPTAALLEVLDPEQ 462 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-- 187 +D +G V +LS I R+ + PL DR + IRL+ Y E+ Sbjct: 463 NKEFIDHYLG-------VPFDLSEVMFICTANRLDTIPRPLLDRMEV-IRLSGYSEEEKL 514 Query: 188 ---LKTIVQRGAKLTGLAVTDEAACEIAMRS-----RGTPRIAG 223 K ++ + K GL DE E + ++ RG R AG Sbjct: 515 HIAKKYLIPKQLKENGL---DEKTVEFSDKAITFLIRGYTREAG 555 >gi|216264904|ref|ZP_03436896.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 156a] gi|215981377|gb|EEC22184.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 156a] Length = 560 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 25/228 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ + I ATT L ++ R ++ Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 + ++++ + DEA IA +S G+ R A L ++ F + Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230 >gi|126459037|ref|YP_001055315.1| ATPase [Pyrobaculum calidifontis JCM 11548] gi|126248758|gb|ABO07849.1| ATPase associated with various cellular activities, AAA_3 [Pyrobaculum calidifontis JCM 11548] Length = 302 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 12/94 (12%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA--LLTNLEDR---- 106 A HVLF PPGLGKTTLA+++A+ LG++F+ D+ + E R Sbjct: 28 AQGHVLFTDPPGLGKTTLAKLLAKSLGLSFKRIQFTPDMLPSDVVGVNVWRPHEGRFEFV 87 Query: 107 ------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 +VL DEI+R + L AME+ Q+ Sbjct: 88 KGPVFTNVLLADEINRAPPKTQAALLEAMEERQV 121 >gi|18312811|ref|NP_559478.1| TBP-interacting protein TIP49 [Pyrobaculum aerophilum str. IM2] gi|18160296|gb|AAL63660.1| TBP-interacting protein TIP49 [Pyrobaculum aerophilum str. IM2] Length = 450 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89 F GQVEA + ++ K A VL VGPPG GKT LA +ARELG + P Sbjct: 38 FVGQVEAREAAYIVVKMIKEGKFAGKGVLIVGPPGTGKTALALGIARELG-----SETPF 92 Query: 90 IAKAG 94 +A +G Sbjct: 93 VALSG 97 >gi|226504612|ref|NP_001142062.1| hypothetical protein LOC100274218 [Zea mays] gi|194706964|gb|ACF87566.1| unknown [Zea mays] Length = 359 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 70 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 129 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 130 LFFDELDSIA 139 >gi|224532486|ref|ZP_03673111.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi WI91-23] gi|225548674|ref|ZP_03769721.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 94a] gi|226321094|ref|ZP_03796636.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 29805] gi|224512558|gb|EEF82934.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi WI91-23] gi|225370704|gb|EEH00140.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 94a] gi|226233504|gb|EEH32243.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 29805] Length = 560 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 25/228 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ + I ATT L ++ R ++ Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 + ++++ + DEA IA +S G+ R A L ++ F + Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230 >gi|3337433|gb|AAC27447.1| transitional endoplasmic reticulum ATPase TER94 [Drosophila melanogaster] Length = 801 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDAIA 307 >gi|295397215|ref|ZP_06807315.1| cell division protein FtsH [Aerococcus viridans ATCC 11563] gi|294974538|gb|EFG50265.1| cell division protein FtsH [Aerococcus viridans ATCC 11563] Length = 646 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77 R ++ GQ EA +L ++ K A+A VL VGPPG GKT +A+ VA E Sbjct: 205 RNFKDVAGQDEAKESLVEVVDYLKEPKKYQEIGAQAPRGVLLVGPPGTGKTLMAKAVAGE 264 Query: 78 LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 GV F S +G + A + L D+ ++FIDEI Sbjct: 265 AGVPFFSIAGSEFVEMFVGRGAAKVRDLFKQANDKAPCIVFIDEI 309 >gi|195379959|ref|XP_002048738.1| GJ21209 [Drosophila virilis] gi|194143535|gb|EDW59931.1| GJ21209 [Drosophila virilis] Length = 801 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDAIA 307 >gi|322383230|ref|ZP_08057041.1| LonB ATP-dependent protease-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152499|gb|EFX45285.1| LonB ATP-dependent protease-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 565 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP +LE+ GQ E LK + + HVL GPPG+GKT A+VV E N Sbjct: 57 RPSSLEDIVGQKEGLKALKAALCGPNPQ-----HVLIYGPPGVGKTAAARVVLEEAKKNI 111 Query: 83 RS 84 +S Sbjct: 112 KS 113 >gi|195942043|ref|ZP_03087425.1| DNA polymerase III subunits gamma and tau [Borrelia burgdorferi 80a] Length = 560 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 25/228 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ + I ATT L ++ R ++ Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 + ++++ + DEA IA +S G+ R A L ++ F + Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230 >gi|195430960|ref|XP_002063516.1| GK21952 [Drosophila willistoni] gi|194159601|gb|EDW74502.1| GK21952 [Drosophila willistoni] Length = 801 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDAIA 307 >gi|195332987|ref|XP_002033173.1| GM21173 [Drosophila sechellia] gi|195582062|ref|XP_002080847.1| GD10706 [Drosophila simulans] gi|194125143|gb|EDW47186.1| GM21173 [Drosophila sechellia] gi|194192856|gb|EDX06432.1| GD10706 [Drosophila simulans] Length = 801 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDAIA 307 >gi|168050884|ref|XP_001777887.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670752|gb|EDQ57315.1| predicted protein [Physcomitrella patens subsp. patens] Length = 550 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 31/137 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGD----------LAALLTNLE 104 +L GPPG GKT++ VARE +F S SG + K AG+ AAL + Sbjct: 47 LLLYGPPGTGKTSVVHAVARECNAHFTSLSGASVHKAFAGESEKVLREAFSKAALEAAIG 106 Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQ----------LDLMVGEGPSARSVKINLSRF 154 ++FIDEI + + P + + L LM G G S+++ SR Sbjct: 107 RPAIIFIDEI--------DTMCPPRDSRRQQETRLVAQLLTLMDGIG-SSKAGLAGTSRV 157 Query: 155 TLIAATTRVGLLTNPLQ 171 ++AAT RV + + L+ Sbjct: 158 VVVAATNRVNSIDSALR 174 >gi|161076486|ref|NP_001097249.1| TER94, isoform C [Drosophila melanogaster] gi|157400263|gb|ABV53745.1| TER94, isoform C [Drosophila melanogaster] Length = 826 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 536 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 595 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 596 LFFDELDSIA 605 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 263 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 322 Query: 109 LFIDEI 114 +FIDEI Sbjct: 323 IFIDEI 328 >gi|260654418|ref|ZP_05859908.1| replication-associated recombination protein A [Jonquetella anthropi E3_33 E1] gi|260631051|gb|EEX49245.1| replication-associated recombination protein A [Jonquetella anthropi E3_33 E1] Length = 426 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 18/145 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RPR+L+E+ G + + L+ F+E + + GPPG+GKT L +++ R Sbjct: 12 MRPRSLDEYRGHSSILAPGAPLRRFLEEGD-----VPSCILYGPPGVGKTALVRLMGRVT 66 Query: 79 G-----VNFRSTSGPVIAKAGDLAALLTNLEDRDVL-FIDEIHRLSIIVEEILYPAMEDF 132 G +N S + D AA L L R + F+DE++ + ++ L P++E Sbjct: 67 GRELLEINAVSAKVSELRDLVDRAADLRRLSGRSAIAFVDELYHFNRSQQDALLPSVERG 126 Query: 133 QLDLMVG---EGPSARSVKINLSRF 154 ++ ++VG E P K LSR Sbjct: 127 EV-ILVGTTTENPRFEINKTLLSRL 150 >gi|195475210|ref|XP_002089877.1| GE19324 [Drosophila yakuba] gi|194175978|gb|EDW89589.1| GE19324 [Drosophila yakuba] Length = 801 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDAIA 307 >gi|195028018|ref|XP_001986879.1| GH20288 [Drosophila grimshawi] gi|193902879|gb|EDW01746.1| GH20288 [Drosophila grimshawi] Length = 802 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 571 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 572 LFFDELDSIA 581 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 239 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 298 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 299 IFIDEIDAIA 308 >gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB] gi|166225157|sp|A6US36|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB] Length = 315 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP L+E G E LK ++E +++ H+LF G PG+GKTT A +A++L N Sbjct: 10 RPENLDEVVGHQEIIKRLKNYVEK-----KSMPHLLFSGSPGVGKTTAALCLAKDLYGN 63 >gi|108803068|ref|YP_643005.1| vesicle-fusing ATPase [Rubrobacter xylanophilus DSM 9941] gi|108764311|gb|ABG03193.1| Vesicle-fusing ATPase [Rubrobacter xylanophilus DSM 9941] Length = 513 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/34 (61%), Positives = 25/34 (73%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +LF GPPG GKT LA+ VARE G +F + SGP I Sbjct: 290 ILFHGPPGTGKTLLARAVARESGAHFIAVSGPEI 323 >gi|17137560|ref|NP_477369.1| TER94, isoform A [Drosophila melanogaster] gi|122087253|sp|Q7KN62|TERA_DROME RecName: Full=Transitional endoplasmic reticulum ATPase TER94; AltName: Full=Valosin-containing protein homolog gi|4689330|gb|AAD27852.1|AF132553_1 BcDNA.GM02885 [Drosophila melanogaster] gi|7303816|gb|AAF58863.1| TER94, isoform A [Drosophila melanogaster] gi|220942716|gb|ACL83901.1| TER94-PA [synthetic construct] Length = 801 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDAIA 307 >gi|71419636|ref|XP_811227.1| peroxisome assembly protein [Trypanosoma cruzi strain CL Brener] gi|70875867|gb|EAN89376.1| peroxisome assembly protein, putative [Trypanosoma cruzi] Length = 955 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F K RA +LF GPPG GKT LA+ VA E+ +NF + GP Sbjct: 686 ELFSTGTKRRA----GILFYGPPGCGKTLLAKAVATEMNMNFMAVKGP 729 >gi|158294507|ref|XP_315644.3| AGAP005630-PA [Anopheles gambiae str. PEST] gi|157015594|gb|EAA44058.3| AGAP005630-PA [Anopheles gambiae str. PEST] Length = 804 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDAIA 307 >gi|329961967|ref|ZP_08299978.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides fluxus YIT 12057] gi|328530615|gb|EGF57473.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides fluxus YIT 12057] Length = 739 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69 ++ A + L PR + GQ EA + ++ +KA + L +LFVGP G+GKT Sbjct: 439 EDTASLETLHPRISAKIYGQDEAVRQVVEAVQMSKAGLMDENKPLASLLFVGPTGVGKTE 498 Query: 70 LAQVVARELGV 80 +A+V+A ELG+ Sbjct: 499 VAKVLATELGI 509 >gi|218249810|ref|YP_002374972.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi ZS7] gi|223888742|ref|ZP_03623333.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 64b] gi|218164998|gb|ACK75059.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi ZS7] gi|223885558|gb|EEF56657.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi 64b] Length = 560 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 25/228 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ + I ATT L ++ R ++ Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 + ++++ + DEA IA +S G+ R A L ++ F + Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230 >gi|162312526|ref|NP_594449.2| DNA replication ATPase [Schizosaccharomyces pombe 972h-] gi|74626620|sp|O13984|WRIP1_SCHPO RecName: Full=ATPase WRNIP1 homolog C26H5.02c gi|62867681|emb|CAB16188.2| DNA replication ATPase [Schizosaccharomyces pombe] Length = 504 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 16/134 (11%) Query: 23 RPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP++L+E+ GQ E ++ IE + + ++ G G GKTTLA+++A Sbjct: 91 RPKSLDEYVGQEELVGERGIIRNLIEQDRCNS-----MILWGSAGTGKTTLARLIAVTTK 145 Query: 80 VNFRSTSGPVIAKAG------DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S A D LT + ++F+DE+HR + ++I P +E Sbjct: 146 SRFIEISATSTTVADCRKIFEDSQNYLTLTGRKTIIFLDEVHRFNRAQQDIFLPMVEKGL 205 Query: 134 LDLM--VGEGPSAR 145 + L+ E PS R Sbjct: 206 VTLIGATTENPSFR 219 >gi|294892451|ref|XP_002774070.1| Katanin p60 ATPase-containing subunit, putative [Perkinsus marinus ATCC 50983] gi|239879274|gb|EER05886.1| Katanin p60 ATPase-containing subunit, putative [Perkinsus marinus ATCC 50983] Length = 438 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 8/75 (10%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL----- 103 +E+ VL GPPG+GKT LA+ VA E G F + S + GD L+ L Sbjct: 191 SESWRGVLLFGPPGVGKTMLAKAVATECGTTFFNVSASTVVSKWRGDSEKLIRCLFELAL 250 Query: 104 -EDRDVLFIDEIHRL 117 + +FIDEI L Sbjct: 251 AQQPSTIFIDEIDSL 265 >gi|195120371|ref|XP_002004702.1| GI19458 [Drosophila mojavensis] gi|193909770|gb|EDW08637.1| GI19458 [Drosophila mojavensis] Length = 801 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDAIA 307 >gi|119482299|ref|XP_001261178.1| cell division control protein Cdc48 [Neosartorya fischeri NRRL 181] gi|119409332|gb|EAW19281.1| cell division control protein Cdc48 [Neosartorya fischeri NRRL 181] Length = 819 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|332529293|ref|ZP_08405255.1| ATP-dependent protease ATP-binding subunit ClpX [Hylemonella gracilis ATCC 19624] gi|332041210|gb|EGI77574.1| ATP-dependent protease ATP-binding subunit ClpX [Hylemonella gracilis ATCC 19624] Length = 421 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE 104 A ++L +GP G GKT LAQ +AR+L V F + +AG +A LL N Sbjct: 114 AKSNILLIGPTGSGKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIAKLLQNCN 173 Query: 105 ------DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 YEVEKAQRGIVYIDEIDKIS 193 >gi|326563109|gb|EGE13382.1| recombination factor protein RarA [Moraxella catarrhalis 12P80B1] Length = 412 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ GQ S R L ++ G G+GKTTLA ++A +G Sbjct: 8 MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65 Query: 82 FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR S V + +L +L + + V+F+DEIHR + ++ L A+E ++ L+ Sbjct: 66 FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124 Query: 138 --VGEGPSARSVKINLSR 153 E PS LSR Sbjct: 125 GATTENPSFSVNNALLSR 142 >gi|254565419|ref|XP_002489820.1| ATP-dependent Lon protease involved in degradation of misfolded proteins in mitochondria [Pichia pastoris GS115] gi|238029616|emb|CAY67539.1| ATP-dependent Lon protease involved in degradation of misfolded proteins in mitochondria [Pichia pastoris GS115] gi|328350236|emb|CCA36636.1| hypothetical protein PP7435_Chr1-0484 [Pichia pastoris CBS 7435] Length = 1066 Score = 45.1 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 42/188 (22%) Query: 38 SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS----------- 86 SN K E KARA L L GPPG+GKT+L + +A+ L F+ S Sbjct: 520 SNPKQEDEEIKARAPIL---LLTGPPGVGKTSLGKSIAKALNKKFQRVSLGGLKDESEIK 576 Query: 87 GPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRL---------------SIIVEEILY 126 G G + LLT + V+ +DEI ++ + + E+L Sbjct: 577 GHRRTYVGAMPGLLTQALRKSQSFDPVILLDEIDKVVDGSQGPGSRVNGDPAAALLEVLD 636 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 P D +G ++LSR I + + +++ PL+DR + I LN Y Sbjct: 637 PEQNSNFSDHYIG-------FPLDLSRVVFICTSNDMSMISAPLRDRMEV-IELNGYNYF 688 Query: 187 DLKTIVQR 194 + IV++ Sbjct: 689 EKVEIVKQ 696 >gi|161076488|ref|NP_001097250.1| TER94, isoform D [Drosophila melanogaster] gi|157400264|gb|ABV53746.1| TER94, isoform D [Drosophila melanogaster] Length = 759 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 469 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 528 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 529 LFFDELDSIA 538 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 196 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 255 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 256 IFIDEIDAIA 265 >gi|112983322|ref|NP_001037003.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori] gi|83423461|dbj|BAE54254.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori] gi|95102992|gb|ABF51437.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori] Length = 805 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCV 571 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 572 LFFDELDSIA 581 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ D + Sbjct: 239 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAI 298 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 299 IFIDEL 304 >gi|71002728|ref|XP_756045.1| cell division control protein Cdc48 [Aspergillus fumigatus Af293] gi|28394450|gb|AAM08677.1| Cdc48p [Aspergillus fumigatus] gi|66853683|gb|EAL94007.1| cell division control protein Cdc48 [Aspergillus fumigatus Af293] gi|159130099|gb|EDP55213.1| cell division control protein Cdc48 [Aspergillus fumigatus A1163] Length = 819 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|225028672|ref|ZP_03717864.1| hypothetical protein EUBHAL_02951 [Eubacterium hallii DSM 3353] gi|224953982|gb|EEG35191.1| hypothetical protein EUBHAL_02951 [Eubacterium hallii DSM 3353] Length = 432 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 28/136 (20%) Query: 11 NVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDH 56 N +++ +I+L++P+ ++ F GQ EA L V + R A + Sbjct: 53 NFNEDTQEINLMKPKEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRILAGGSYDVELQKSN 112 Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-- 107 ++ +GP G GKT LAQ +AR+L V F + +AG D+ +L L D D Sbjct: 113 IIMLGPTGSGKTLLAQTLARQLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIE 172 Query: 108 -----VLFIDEIHRLS 118 +++IDEI +++ Sbjct: 173 RAQTGIIYIDEIDKIT 188 >gi|213962623|ref|ZP_03390884.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga sputigena Capno] gi|213954618|gb|EEB65939.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga sputigena Capno] Length = 363 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 32/237 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP++ + GQ + L IE A+AL LF GP G+GKTT A+++A+++ Sbjct: 12 RPQSFHDVVGQQAITNTLLNAIENNHL-AQAL---LFTGPRGVGKTTCARILAKKIN--- 64 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------------SIIVEEILYPA 128 T+G + D A + L+ +D+I +L I++E+ + Sbjct: 65 EQTAG--VEDENDFAFNIFELDAASNNSVDDIRKLIEQVRIPPQVGKYKVYIIDEVHMLS 122 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 F L E P ++ I ATT + + R I I D+ Sbjct: 123 PSAFNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI-FDFKRITINDI 173 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 + ++ A+ G+A DEA IA ++ G R A + RV F+ + T EI Sbjct: 174 REYLKYIAQQQGIAAEDEALQIIAQKADGAMRDALSIFDRVVSFSGEKITRQATSEI 230 >gi|194389988|dbj|BAG60510.1| unnamed protein product [Homo sapiens] Length = 765 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 527 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 558 >gi|24652279|ref|NP_724866.1| TER94, isoform B [Drosophila melanogaster] gi|7303817|gb|AAF58864.1| TER94, isoform B [Drosophila melanogaster] gi|25012330|gb|AAN71276.1| LP12034p [Drosophila melanogaster] gi|220950626|gb|ACL87856.1| TER94-PB [synthetic construct] Length = 297 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 7 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 66 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 67 LFFDELDSIA 76 >gi|326573491|gb|EGE23457.1| recombination factor protein RarA [Moraxella catarrhalis O35E] Length = 412 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ GQ S R L ++ G G+GKTTLA ++A +G Sbjct: 8 MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65 Query: 82 FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR S V + +L +L + + V+F+DEIHR + ++ L A+E ++ L+ Sbjct: 66 FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124 Query: 138 --VGEGPSARSVKINLSR 153 E PS LSR Sbjct: 125 GATTENPSFSVNNALLSR 142 >gi|312897409|ref|ZP_07756833.1| DNA polymerase III, subunit gamma and tau [Megasphaera micronuciformis F0359] gi|310621470|gb|EFQ05006.1| DNA polymerase III, subunit gamma and tau [Megasphaera micronuciformis F0359] Length = 627 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T E+ GQ L+ +E K A A LF GP G GKT+ A++ A+ L Sbjct: 11 RPKTFEDVVGQGRIMKTLQQAVENDKV-AHAY---LFSGPRGTGKTSTAKIFAKALNCVH 66 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119 TS P D+ +T+ E DV+ ID SI Sbjct: 67 GPTSHP--CNECDVCKHITSGESLDVVEIDAASNRSI 101 >gi|255969567|gb|ACU45413.1| ATP-dependent Zn protease [Peanut witches'-broom phytoplasma] Length = 685 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 114/264 (43%), Gaps = 51/264 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VL GPPG GKT LA+ VA E GV F +TSG V G A+ + NL + + Sbjct: 229 VLLSGPPGTGKTLLAKAVAGEAGVAFFATSGSEFVEKYVGVGASRIRNLFQKAAQYSPCI 288 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMV----GEGPSARSVKINLS------------ 152 +FIDE+ L+ I + + D L+ ++ G G + + I + Sbjct: 289 IFIDEVEGLAHKRGAISHNSEHDNTLNQLLVELDGFGSNTEIIVIAATNQPEMLDSALLR 348 Query: 153 ------RFT--LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204 RFT L +A R +L +++ P +N EI + +TI GA+L G V Sbjct: 349 PGRFDRRFTINLPSARDRKAILELHAKNKHFSP-NVNLSEIAE-QTIGFSGAQLEG--VL 404 Query: 205 DEAACEIAMRSRG---TPRIAGRLLRRV-------RDFAEVAHAKTITREIADAALLRLA 254 +E+A +A R R P+ + R+ +DF K + A +L + Sbjct: 405 NESAL-LAARRRSLYIEPQDVNEAIDRILIGSTVKKDFLSKKEKKLVAYHEAGHGVLAVV 463 Query: 255 IDKMGFDQLDLRYLTMIARNFGGG 278 +D D +R +T+I R GG Sbjct: 464 LD----DIEKVRKITIIPRGSVGG 483 >gi|302902973|ref|XP_003048760.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256729694|gb|EEU43047.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 820 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 532 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 563 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 258 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 317 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 318 IFIDEIDSIA 327 >gi|71408237|ref|XP_806535.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL Brener] gi|70870309|gb|EAN84684.1| replication factor C, subunit 2, putative [Trypanosoma cruzi] Length = 347 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL E Q EA L+ ++ + + + H LF GPPG GKTT VAREL Sbjct: 26 RPMTLSEVKSQEEAVCALRASLQPSAS----MPHFLFHGPPGTGKTTAILAVAREL 77 >gi|67470376|ref|XP_651156.1| Activator 1 40 kDa subunit [Entamoeba histolytica HM-1:IMSS] gi|56467854|gb|EAL45769.1| Activator 1 40 kDa subunit, putative [Entamoeba histolytica HM-1:IMSS] Length = 315 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 65/284 (22%), Positives = 118/284 (41%), Gaps = 52/284 (18%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ L+E G V+ LK F ++ + H+L G PG+GKTT +A EL + Sbjct: 14 RPKLLDEIIGNVDIIKTLKSFRDSKQ-----FPHLLLCGQPGIGKTTSIHCLAHEL-LKD 67 Query: 83 RSTSGPVIAKAGD------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 R + A D + + + + ++ ++ D + ++ I+ E D Sbjct: 68 RYKDAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEA-----------DS 116 Query: 137 MVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI--EDLKTIV 192 M A R+++I+ + A + P+Q R RL F + E+L + Sbjct: 117 MTTAAFQALRRTMEIHSKTTRFVLACNTPEKIIEPIQSRCA---RLTFRPLGEEELMNRI 173 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPR-----------IAGRLLR-RVRDFAEVAHAKT 240 + A G+ + D+A + + S G R I G++ + +V ++ A Sbjct: 174 KEIAHCEGVDIEDDAVKALEIVSEGDMRKAINALQTCAIIQGKITKEQVYQRNDLPSADN 233 Query: 241 ITREIA-------DAALLRL-AIDKMGFDQLDLRYLTMIARNFG 276 I + I D AL+ + + ++GFD D+ + MI R F Sbjct: 234 IIQAIQLCLKKDFDGALIEIKKVQQLGFDGNDI--IDMIVRMFS 275 >gi|326560683|gb|EGE11051.1| recombination factor protein RarA [Moraxella catarrhalis 46P47B1] Length = 412 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ GQ S R L ++ G G+GKTTLA ++A +G Sbjct: 8 MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65 Query: 82 FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR S V + +L +L + + V+F+DEIHR + ++ L A+E ++ L+ Sbjct: 66 FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124 Query: 138 --VGEGPSARSVKINLSR 153 E PS LSR Sbjct: 125 GATTENPSFSVNNALLSR 142 >gi|332251959|ref|XP_003275119.1| PREDICTED: nuclear valosin-containing protein isoform 3 [Nomascus leucogenys] Length = 764 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 526 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 557 >gi|319956043|ref|YP_004167306.1| ATP-dependent clp protease, ATP-binding subunit clpa [Nitratifractor salsuginis DSM 16511] gi|319418447|gb|ADV45557.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Nitratifractor salsuginis DSM 16511] Length = 733 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 67/166 (40%), Gaps = 44/166 (26%) Query: 10 RNVSQEDADISLLRPRTLEE----------------FTGQVEACSNLKVFIEAAKARAEA 53 +++SQ + + L P TLEE GQ EA + L +A K Sbjct: 412 KDISQILSRMLKLPPATLEEEDTERLRRLKERLRERIVGQEEAITRLS---QAIKRSYAG 468 Query: 54 LDH-------VLFVGPPGLGKTTLAQVVARELGVNFR------------------STSGP 88 L+H LFVGP G+GKT LAQV+A LGV+F + G Sbjct: 469 LNHPESPIGSFLFVGPTGVGKTALAQVLAETLGVHFERLDMSEYMEKHAVSRLIGAPPGY 528 Query: 89 VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 V + G L + VL +DEI + + IL M+ +L Sbjct: 529 VGYEQGGLLTEMIKKHPHTVLLLDEIEKAHPDIMNILLQVMDSAKL 574 >gi|255956331|ref|XP_002568918.1| Pc21g19270 [Penicillium chrysogenum Wisconsin 54-1255] gi|211590629|emb|CAP96824.1| Pc21g19270 [Penicillium chrysogenum Wisconsin 54-1255] Length = 820 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|88801469|ref|ZP_01116997.1| AAA ATPase, CDC48 [Polaribacter irgensii 23-P] gi|88782127|gb|EAR13304.1| AAA ATPase, CDC48 [Polaribacter irgensii 23-P] Length = 717 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 25/43 (58%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 KA ++ GPPG GKT LA+ VA E GVNF S GP I Sbjct: 485 KADTNPPKGIILYGPPGTGKTYLAKAVASESGVNFISVKGPQI 527 >gi|322827699|gb|EFZ31763.1| peroxisome assembly protein, putative [Trypanosoma cruzi] Length = 954 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F K RA +LF GPPG GKT LA+ VA E+ +NF + GP Sbjct: 685 ELFSTGTKRRA----GILFYGPPGCGKTLLAKAVATEMNMNFMAVKGP 728 >gi|296229993|ref|XP_002760519.1| PREDICTED: nuclear valosin-containing protein-like isoform 2 [Callithrix jacchus] Length = 765 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 527 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 558 >gi|296242922|ref|YP_003650409.1| CDC48 subfamily AAA family ATPase [Thermosphaera aggregans DSM 11486] gi|296095506|gb|ADG91457.1| AAA family ATPase, CDC48 subfamily [Thermosphaera aggregans DSM 11486] Length = 744 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 27/123 (21%) Query: 24 PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR E G +E A ++ +E E +H +L GPPG GKT LA+ + Sbjct: 183 PRITWEDIGDLEEAKQKIREIVELPLKNPELFEHLGIEPPKGILLYGPPGTGKTLLAKAL 242 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------------DVLFIDEIHRLSIIV 121 A E+G F + +GP I ++ E+R V+FIDEI ++ Sbjct: 243 ANEIGAYFITINGPEI-----MSKFYGESEERLRKIFEEAEANAPSVIFIDEIDSIAPKR 297 Query: 122 EEI 124 EE+ Sbjct: 298 EEV 300 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR--- 106 E +L GPPG GKT LA+ VA E G NF + GP V++K G+ + + R Sbjct: 494 EPPKGILLFGPPGTGKTLLAKAVATESGANFITVRGPEVLSKWVGESEKAIRQIFRRAKM 553 Query: 107 ---DVLFIDEIHRLS 118 V+F DEI ++ Sbjct: 554 VAPSVVFFDEIDSIA 568 >gi|282165489|ref|YP_003357874.1| cell division control protein 48 [Methanocella paludicola SANAE] gi|282157803|dbj|BAI62891.1| cell division control protein 48 [Methanocella paludicola SANAE] Length = 839 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E G F S +GP I G+ L + N D + Sbjct: 229 VLLHGPPGTGKTLLAKAVANECGAEFFSIAGPEIMSKYYGESEQRLREIFENARDNAPSI 288 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ EE+ Sbjct: 289 IFIDELDSIAPRREEV 304 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++ GPPG GKT LA+ VA E NF S GP Sbjct: 500 IVLYGPPGTGKTLLARAVANESEANFISIRGP 531 >gi|170017866|ref|YP_001728785.1| DNA polymerase III, gamma/tau subunit [Leuconostoc citreum KM20] gi|169804723|gb|ACA83341.1| DNA polymerase III, gamma/tau subunit [Leuconostoc citreum KM20] Length = 604 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 27/118 (22%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79 + RPRT E+ GQ LK IE + LF GP G GKT+ A++ ARE+ Sbjct: 9 VYRPRTFEDMIGQEVITQTLKNAIETHQTGHA----YLFSGPRGTGKTSAAKIFAREVNG 64 Query: 80 -------------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLS 118 V F + S ++ D+ +L+N++ + V IDE+H LS Sbjct: 65 IAPETDDSQISDIVEFDAASN---SRVEDMRDILSNVDYAPIEAEFKVYIIDEVHMLS 119 >gi|30249257|ref|NP_841327.1| lonA; ATP-dependent proteinase La 1 (lon) (class III heat-shock protein) [Nitrosomonas europaea ATCC 19718] gi|30180576|emb|CAD85189.1| lonA; ATP-dependent proteinase La 1 (lon) (class III heat-shock protein) [Nitrosomonas europaea ATCC 19718] Length = 788 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 38/180 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + F GPPG+GKT+L Q +AR L F R + G V +A G++ L Sbjct: 360 LCFAGPPGVGKTSLGQSIARALQRPFVRVSLGGVHDEAEMRGHRRTYVGAMPGNIIQGLR 419 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R+ V+ +DEI +++ EIL P D +G V +LS Sbjct: 420 KAGARNCVMMLDEIDKMTASAHGDPAAALLEILDPEQNSTFRDNYLG-------VPFDLS 472 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEA 207 R IA + + P++DR I I L Y E+ L+ +VQR ++ GL TD+ Sbjct: 473 RVVFIATANVIDQIPPPVRDRMEI-IDLPGYTQEEKLQIALRYLVQRQSEANGLQ-TDQC 530 >gi|313665403|ref|YP_004047274.1| recombination factor protein RarA [Mycoplasma leachii PG50] gi|312950049|gb|ADR24645.1| recombination factor protein RarA [Mycoplasma leachii PG50] Length = 411 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 15/117 (12%) Query: 21 LLRPRTLEEFTGQVEACS-----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 LLRP++ + GQ E N + + ++F GP G+GKT+ A +A Sbjct: 8 LLRPKSTKNIIGQTEILKPNGLINKMILNNYCTS-------LIFFGPSGVGKTSFAISLA 60 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAME 130 +L +++ + K L ++ N +++ +L IDEIHRL+ ++IL ME Sbjct: 61 NDLKIDYEIFNASY-DKKEKLINIIQNALKKEKFILIIDEIHRLNKDKQDILLEYME 116 >gi|297280699|ref|XP_001096285.2| PREDICTED: nuclear VCP-like isoform 1 [Macaca mulatta] Length = 765 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 527 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 558 >gi|170036949|ref|XP_001846323.1| spermatogenesis associated factor [Culex quinquefasciatus] gi|167879951|gb|EDS43334.1| spermatogenesis associated factor [Culex quinquefasciatus] Length = 797 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 505 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCV 564 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 565 LFFDELDSIA 574 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 232 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 291 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 292 IFIDEIDAIA 301 >gi|167396191|ref|XP_001741947.1| replication factor C subunit [Entamoeba dispar SAW760] gi|165893256|gb|EDR21578.1| replication factor C subunit, putative [Entamoeba dispar SAW760] Length = 315 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 65/284 (22%), Positives = 118/284 (41%), Gaps = 52/284 (18%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ L+E G V+ LK F ++ + H+L G PG+GKTT +A EL + Sbjct: 14 RPKLLDEIIGNVDIIKTLKSFRDSKQ-----FPHLLLCGQPGIGKTTSIHCLAHEL-LKD 67 Query: 83 RSTSGPVIAKAGD------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 R + A D + + + + ++ ++ D + ++ I+ E D Sbjct: 68 RYKEAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEA-----------DS 116 Query: 137 MVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI--EDLKTIV 192 M A R+++I+ + A + P+Q R RL F + E+L + Sbjct: 117 MTTAAFQALRRTMEIHSKTTRFVLACNTPEKIIEPIQSRCA---RLTFRPLGEEELMNRI 173 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPR-----------IAGRLLR-RVRDFAEVAHAKT 240 + A+ + + D+A + + S G R I GR+ + +V ++ A Sbjct: 174 KEIARCENVDIEDDAVKALEIVSEGDMRKAINALQTCAIIQGRITKEQVYQRNDLPSADN 233 Query: 241 ITREIA-------DAALLRL-AIDKMGFDQLDLRYLTMIARNFG 276 I + I D AL+ + + ++GFD D+ + MI R F Sbjct: 234 IIQAIQLCLKKDFDGALIEIKKVQQLGFDGNDI--MDMIVRMFS 275 >gi|167840344|ref|ZP_02467028.1| cell division control protein 48 ATPase of AAA family CDC48 subfamily [Burkholderia thailandensis MSMB43] Length = 622 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 25/41 (60%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A A+ +L VGPPG GKT LA+ A E GVNF GP Sbjct: 393 RAGAKPSKGILLVGPPGCGKTWLAKAAANECGVNFIPVKGP 433 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +A VL GPPG GKT +A+ +A E F S SGP + Sbjct: 124 DAPKGVLLYGPPGCGKTLIARAIAHECDAAFFSVSGPEV 162 >gi|145259126|ref|XP_001402275.1| cell division control protein 48 [Aspergillus niger CBS 513.88] gi|134074895|emb|CAK39004.1| unnamed protein product [Aspergillus niger] Length = 820 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|71405010|ref|XP_805160.1| peroxisome assembly protein [Trypanosoma cruzi strain CL Brener] gi|70868457|gb|EAN83309.1| peroxisome assembly protein, putative [Trypanosoma cruzi] Length = 873 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F K RA +LF GPPG GKT LA+ VA E+ +NF + GP Sbjct: 684 ELFSTGTKRRA----GILFYGPPGCGKTLLAKAVATEMNMNFMAVKGP 727 >gi|66806375|ref|XP_636910.1| cell division cycle protein 48 [Dictyostelium discoideum AX4] gi|4996891|gb|AAB40928.2| cell division cycle protein 48 [Dictyostelium discoideum] gi|60465285|gb|EAL63377.1| cell division cycle protein 48 [Dictyostelium discoideum AX4] Length = 793 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + L D+ V Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCV 571 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 572 LFFDELDSIA 581 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 239 ILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 298 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 299 IFIDEIDSIA 308 >gi|145351488|ref|XP_001420108.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580341|gb|ABO98401.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 437 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 15/119 (12%) Query: 11 NVSQEDADISLLRPRTLEEFTG-------QVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 N++ + D ++ + TL++ TG E S LK F + A VL GPP Sbjct: 45 NMTTRNYDSNVRQGMTLKDITGIDNVKAEMFELISYLKDFEKYNSMGARIPAGVLLCGPP 104 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 G GKT LA+ VA E V F S +G + G AA + NL D+ ++FIDE Sbjct: 105 GTGKTLLARCVAGEANVPFFSCAGTEFMEMFVGVGAARIRNLFDQAKKVAPCIIFIDEF 163 >gi|157132226|ref|XP_001662523.1| spermatogenesis associated factor [Aedes aegypti] gi|108871250|gb|EAT35475.1| spermatogenesis associated factor [Aedes aegypti] Length = 720 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108 +L GPPG GKT +A+ VA E G F +GP I +L E + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKKSPAI 297 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 298 IFIDEL 303 >gi|326571804|gb|EGE21810.1| recombination factor protein RarA [Moraxella catarrhalis BC7] Length = 412 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ GQ S R L ++ G G+GKTTLA ++A +G Sbjct: 8 MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65 Query: 82 FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR S V + +L +L + + V+F+DEIHR + ++ L A+E ++ L+ Sbjct: 66 FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124 Query: 138 --VGEGPSARSVKINLSR 153 E PS LSR Sbjct: 125 GATTENPSFSVNNALLSR 142 >gi|297483981|ref|XP_002694038.1| PREDICTED: nuclear VCP-like [Bos taurus] gi|296479315|gb|DAA21430.1| nuclear VCP-like [Bos taurus] Length = 864 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 626 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 657 >gi|255535502|ref|YP_003095873.1| putative DNA polymerase III [Flavobacteriaceae bacterium 3519-10] gi|255341698|gb|ACU07811.1| putative DNA polymerase III [Flavobacteriaceae bacterium 3519-10] Length = 367 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 23/221 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ + GQ L+ IE + A+AL LF GP G+GKTT A+++AR++ Sbjct: 12 RPQEFDTVVGQSHITDTLEHAIEENQL-AQAL---LFCGPRGVGKTTCARILARKINERD 67 Query: 83 RSTSG--------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-IVEEILYPAMEDFQ 133 STS + A + + + +L D+ V F ++ + I I++E+ + F Sbjct: 68 GSTSEDGFSYNIFELDAASNNGVEEIRDLTDQ-VRFAPQVGKYKIYIIDEVHMLSSAAFN 126 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L E P A ++ I ATT + + R I IED++ ++ Sbjct: 127 AFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI-YDFKRITIEDIQNQLR 177 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 A G+ D+A +A ++ G R A + R+ F + Sbjct: 178 NIADKEGIKYEDDALYMVAQKADGALRDALSIFDRLSTFTQ 218 >gi|226227754|ref|YP_002761860.1| ATP-dependent Lon protease [Gemmatimonas aurantiaca T-27] gi|226090945|dbj|BAH39390.1| ATP-dependent Lon protease [Gemmatimonas aurantiaca T-27] Length = 835 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 33/163 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG GKT+L + +A+ + F R + G V +A G L L Sbjct: 365 LCFVGPPGTGKTSLGEAIAKSIDRAFYRISVGGVRDEAEIRGHRRTYVGAMPGMLIQALR 424 Query: 102 NLEDRD-VLFIDEIHRLS---------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 +E RD V+ IDEI ++S + E+L P+ +D + ++ +L Sbjct: 425 RVEVRDPVIMIDEIDKMSSGGSGGDPTAAMLEVLDPSQNTTFVDHYL-------NLPFDL 477 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 S I + + PL+DR + IR+ Y IE+ I QR Sbjct: 478 SSTLFICTANNLFDIPGPLRDRMEV-IRIAGYTIEEKVEIAQR 519 >gi|296004694|ref|XP_966179.2| cell division cycle protein 48 homologue, putative [Plasmodium falciparum 3D7] gi|225631753|emb|CAG25009.2| cell division cycle protein 48 homologue, putative [Plasmodium falciparum 3D7] Length = 828 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 517 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 548 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ A L E+ + + Sbjct: 244 VLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAI 303 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 304 IFIDEIDSIA 313 >gi|171685948|ref|XP_001907915.1| hypothetical protein [Podospora anserina S mat+] gi|170942935|emb|CAP68588.1| unnamed protein product [Podospora anserina S mat+] Length = 824 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 535 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 566 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 261 VLLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 320 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 321 IFIDEIDSIA 330 >gi|163783714|ref|ZP_02178701.1| Lon protease [Hydrogenivirga sp. 128-5-R1-1] gi|159881039|gb|EDP74556.1| Lon protease [Hydrogenivirga sp. 128-5-R1-1] Length = 773 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 101/257 (39%), Gaps = 64/257 (24%) Query: 59 FVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAALL 100 FVGPPG+GKT+L + +A LG F R+ G + + + A+ Sbjct: 348 FVGPPGVGKTSLGKSIAEALGRKFVRIALGGIRDEAEIRGHRRTYVGAMPGRI--IQAIK 405 Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 ++ +DEI +L++ + E+L P DL +G + +LS Sbjct: 406 QAGTKNPLIMLDEIDKLAMSFQGDPASALLEVLDPEQNKNFTDLYIG-------LPFDLS 458 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202 I R+ + PL DR + I+L+ Y E+ I Q+ G K + Sbjct: 459 EVIFICTGNRMDTIPTPLLDRMEL-IQLSGYSEEEKLFIAQKHLLPKLIPLHGLKEEEIQ 517 Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262 DEA EI RG R AG + + R+I+ + L ++A+ K+ ++ Sbjct: 518 FEDEAILEII---RGYTREAG--------------VRNLQRQIS-SVLRKIAVKKLKGEE 559 Query: 263 LDLRYLTMIARNFGGGP 279 R R G P Sbjct: 560 GPFRITKEDIRKLLGVP 576 >gi|121717057|ref|XP_001275994.1| cell division control protein Cdc48 [Aspergillus clavatus NRRL 1] gi|119404151|gb|EAW14568.1| cell division control protein Cdc48 [Aspergillus clavatus NRRL 1] Length = 819 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|327310719|ref|YP_004337616.1| AAA family ATPase [Thermoproteus uzoniensis 768-20] gi|326947198|gb|AEA12304.1| AAA family ATPase, possible cell division control protein cdc48 [Thermoproteus uzoniensis 768-20] Length = 730 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 16/117 (13%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVA 75 P T E+ EA ++ +E E H +L GPPG GKT LA+ VA Sbjct: 174 PVTWEDIGDLEEAKQKIRELVELPLRHPELFKHLGIEPPKGILLFGPPGTGKTLLAKAVA 233 Query: 76 RELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 E F + +GP I G+ A L + D ++FIDEI ++ EE+ Sbjct: 234 NEANAYFIAINGPEIMSKYYGESEAKLREIFDEAKKNAPAIIFIDEIDAIAPKREEV 290 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ VA E G NF + GP I G+ ++ + + V Sbjct: 490 ILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMIREIFQKARMAAPCV 549 Query: 109 LFIDEIHRLS 118 +FIDEI L+ Sbjct: 550 VFIDEIDALA 559 >gi|297734936|emb|CBI17170.3| unnamed protein product [Vitis vinifera] Length = 927 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 460 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTKWFGESEANVREIFDKARQSASCV 519 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 520 LFFDELDSIA 529 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 200 ILLYGPPGSGKTLIAKAVANETGAFFFCINGPEI 233 >gi|15594806|ref|NP_212595.1| DNA polymerase III subunits gamma and tau [Borrelia burgdorferi B31] gi|2688379|gb|AAC66831.1| DNA polymerase III, subunits gamma and tau (dnaX) [Borrelia burgdorferi B31] Length = 560 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 25/228 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ + I ATT L ++ R ++ Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 + ++++ + DEA IA +S G+ R A L ++ F + Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230 >gi|169775759|ref|XP_001822346.1| cell division control protein 48 [Aspergillus oryzae RIB40] gi|238502409|ref|XP_002382438.1| cell division control protein Cdc48 [Aspergillus flavus NRRL3357] gi|83771081|dbj|BAE61213.1| unnamed protein product [Aspergillus oryzae] gi|220691248|gb|EED47596.1| cell division control protein Cdc48 [Aspergillus flavus NRRL3357] Length = 821 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|85691123|ref|XP_965961.1| ATPase [Encephalitozoon cuniculi GB-M1] gi|74697616|sp|Q8SSJ5|CDC48_ENCCU RecName: Full=Cell division control protein 48 gi|19068528|emb|CAD24996.1| PROTEIN OF THE CDC48/PAS1/SEC28 FAMILY OF ATPases [Encephalitozoon cuniculi GB-M1] Length = 780 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ + + +L R V Sbjct: 518 VLFYGPPGCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFARARGAAPCV 577 Query: 109 LFIDEIHRLS 118 LF DEI ++ Sbjct: 578 LFFDEIDSIA 587 Score = 36.2 bits (82), Expect = 8.1, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ +A E G +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 304 Query: 109 LFIDEIHRLS 118 +FIDEI L+ Sbjct: 305 IFIDEIDALA 314 >gi|116747549|ref|YP_844236.1| ATP-dependent protease La [Syntrophobacter fumaroxidans MPOB] gi|302425098|sp|A0LEE9|LON1_SYNFM RecName: Full=Lon protease 1; AltName: Full=ATP-dependent protease La 1 gi|116696613|gb|ABK15801.1| Lon-A peptidase. Serine peptidase. MEROPS family S16 [Syntrophobacter fumaroxidans MPOB] Length = 815 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 55/222 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+LA+ +AR + NF R + G V +A G + L Sbjct: 360 LCFVGPPGVGKTSLAKSIARAMNRNFIRLSLGGVRDEAEIRGHRRTYIGAMPGKIIQSLK 419 Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ + +F +DE+ ++S+ E+L P + D LDL Sbjct: 420 KVKSNNPVFCLDEVDKMSMDFRGDPSAALLEVLDPEQNFSFNDHYLDL-----------D 468 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT----IVQRGAKLTGLAVT 204 +LS I + + PL+DR I + E + L +V + K GL++ Sbjct: 469 YDLSEVFFITTANNLHSIPPPLRDRMEIIQIAGYTEFDKLNIGRNFLVAKQCKANGLSLD 528 Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 + A + LL +R + + A + + REIA Sbjct: 529 NIAFSD------------DMLLYIIRHYTKEAGVRNLEREIA 558 >gi|326562332|gb|EGE12658.1| recombination factor protein RarA [Moraxella catarrhalis 103P14B1] gi|326575536|gb|EGE25461.1| recombination factor protein RarA [Moraxella catarrhalis 101P30B1] Length = 412 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ GQ S R L ++ G G+GKTTLA ++A +G Sbjct: 8 MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65 Query: 82 FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR S V + +L +L + + V+F+DEIHR + ++ L A+E ++ L+ Sbjct: 66 FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124 Query: 138 --VGEGPSARSVKINLSR 153 E PS LSR Sbjct: 125 GATTENPSFSVNNALLSR 142 >gi|320583346|gb|EFW97561.1| DNA replication ATPase [Pichia angusta DL-1] Length = 769 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 16/143 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +LE++ GQ L+ FI+ + + ++ G PG GKTTLA++++ Sbjct: 348 LRPSSLEDYIGQEHLVGEGGILRGFIQNDR-----IPSLILWGYPGTGKTTLARIISHAT 402 Query: 79 GVNF---RSTSGPV--IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132 F +TS + + + A L R ++FIDEIHR + ++I P +E Sbjct: 403 KSRFIELSATSNGISDCKRVFEEARNEYKLTKRHTIVFIDEIHRFNKAQQDIFLPHVEKG 462 Query: 133 QLDLM--VGEGPSARSVKINLSR 153 + L+ E PS + LSR Sbjct: 463 TITLVGATTENPSFQLNSALLSR 485 >gi|302803690|ref|XP_002983598.1| hypothetical protein SELMODRAFT_624 [Selaginella moellendorffii] gi|300148841|gb|EFJ15499.1| hypothetical protein SELMODRAFT_624 [Selaginella moellendorffii] Length = 516 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------EDRDV 108 VL GPPG GKT+LAQ VA+E GV +GP V G+ A + + E V Sbjct: 40 VLLYGPPGTGKTSLAQAVAKEAGVKMLVINGPEIVTEYHGESEAAMKAIFDLAAREAPSV 99 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 100 VFIDEL 105 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108 VL GPPG KT +A+ VA E G+NF + GP + KA V Sbjct: 306 VLLYGPPGCSKTMMARAVAAETGLNFIAVKGPELFSKWVGESEKAVRALFARAKAAAPSV 365 Query: 109 LFIDEIHRLSI 119 +F DEI L+I Sbjct: 366 VFFDEIDGLAI 376 >gi|296229991|ref|XP_002760518.1| PREDICTED: nuclear valosin-containing protein-like isoform 1 [Callithrix jacchus] Length = 856 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 649 >gi|212529968|ref|XP_002145141.1| cell division control protein Cdc48 [Penicillium marneffei ATCC 18224] gi|210074539|gb|EEA28626.1| cell division control protein Cdc48 [Penicillium marneffei ATCC 18224] Length = 822 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFYGPPGTGKTMLAKAVANECSANFISVKGP 564 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|168049525|ref|XP_001777213.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671441|gb|EDQ57993.1| predicted protein [Physcomitrella patens subsp. patens] Length = 804 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 513 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCV 572 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 573 LFFDELDSIA 582 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 240 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 299 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 300 IFIDEIDSIA 309 >gi|115385577|ref|XP_001209335.1| cell division cycle protein 48 [Aspergillus terreus NIH2624] gi|114187782|gb|EAU29482.1| cell division cycle protein 48 [Aspergillus terreus NIH2624] Length = 821 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|109018123|ref|XP_001096627.1| PREDICTED: nuclear VCP-like isoform 4 [Macaca mulatta] Length = 856 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 649 >gi|12856485|dbj|BAB30684.1| unnamed protein product [Mus musculus] Length = 490 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA VVARE G+NF S GP Sbjct: 84 ILLYGPPGTGKTLLAGVVARESGMNFISIKGP 115 >gi|300857391|ref|YP_003782375.1| ATP-dependent protease LA [Clostridium ljungdahlii DSM 13528] gi|300437506|gb|ADK17273.1| ATP-dependent protease LA [Clostridium ljungdahlii DSM 13528] Length = 631 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 12/77 (15%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 ++D +GL S+N+ + LLRP T +E GQ A ++ +K + H++ Sbjct: 151 VLDSKGL-SKNIQK------LLRPETFDEIIGQERAIKSI-----LSKIASPYPQHIILY 198 Query: 61 GPPGLGKTTLAQVVARE 77 GPPG+GKTT A++ E Sbjct: 199 GPPGVGKTTAARIALEE 215 >gi|296114100|ref|YP_003628038.1| recombination protein MgsA [Moraxella catarrhalis RH4] gi|295921794|gb|ADG62145.1| recombination protein MgsA [Moraxella catarrhalis RH4] Length = 412 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ GQ S R L ++ G G+GKTTLA ++A +G Sbjct: 8 MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65 Query: 82 FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR S V + +L +L + + V+F+DEIHR + ++ L A+E ++ L+ Sbjct: 66 FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124 Query: 138 --VGEGPSARSVKINLSR 153 E PS LSR Sbjct: 125 GATTENPSFSVNNALLSR 142 >gi|325680328|ref|ZP_08159888.1| recombination factor protein RarA [Ruminococcus albus 8] gi|324108037|gb|EGC02293.1| recombination factor protein RarA [Ruminococcus albus 8] Length = 423 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 16/145 (11%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL+E GQ L+ IE+ + +++F GP G+GKTT+A+ +A Sbjct: 9 IRPKTLDEIVGQTHLMGEGKPLRRIIESG-----TIPNLIFYGPSGVGKTTIARFIAENA 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + +G A D+ ++ E + +L++DEI L+ ++ L +E+ Sbjct: 64 NMTMYKLNG-TSASVADIKNIIAETEMLSGMNGILLYLDEIQYLNKKQQQSLLEYIENGS 122 Query: 134 LDLMVG--EGPSARSVKINLSRFTL 156 + L+ E P +SR T+ Sbjct: 123 ITLISSTTENPYFYVYNAIISRSTV 147 >gi|281204558|gb|EFA78753.1| cell division cycle protein 48 [Polysphondylium pallidum PN500] Length = 791 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + L D+ V Sbjct: 510 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCV 569 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 570 LFFDELDSIA 579 Score = 38.9 bits (89), Expect = 1.00, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 237 ILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 296 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 297 IFIDEIDSIA 306 >gi|15082383|gb|AAH12105.1| NVL protein [Homo sapiens] gi|325464593|gb|ADZ16067.1| nuclear VCP-like [synthetic construct] Length = 659 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 421 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 452 >gi|42780219|ref|NP_977466.1| stage V sporulation protein K [Bacillus cereus ATCC 10987] gi|42736138|gb|AAS40074.1| stage V sporulation protein K [Bacillus cereus ATCC 10987] Length = 1930 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 51/206 (24%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKAGDLAALL--TNLEDRD--- 107 H++F G PG GKTT+A+VVA +LG+ S + ++G +A + T ++ ++ Sbjct: 1713 HMIFTGNPGTGKTTVARVVAELLYQLGI-LSSNKVIEVDRSGLVAGYVGQTAIKTKEVIQ 1771 Query: 108 -----VLFIDEIHRLSIIVE----------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 VLFIDE + L+ V + L AMED++ DL+V Sbjct: 1772 SALGGVLFIDEAYALAKDVNTSHGFGKEAIDTLLKAMEDYREDLIV-------------- 1817 Query: 153 RFTLIAATTR--VGLL-TNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208 ++A T G L TNP L+ R I Y +++L + ++ K G +T EAA Sbjct: 1818 ---ILAGYTDEMEGFLNTNPGLRSRIPNKIEFKDYSVDELLQMGEKMFKENGYELT-EAA 1873 Query: 209 CEIAMRSRGTPRIA-----GRLLRRV 229 E R A GR +R V Sbjct: 1874 YEKLREKTEIARTAEQFGNGRYVRNV 1899 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 35/172 (20%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV------------IAKAGDLAALLTNL 103 + +F G PG GKTT+A++VA+ L +SG + + + G + + Sbjct: 625 NFIFTGNPGTGKTTIARLVAKYLKALGYLSSGHLVEVDRARLVAQYVGQTGPKTQAVIDS 684 Query: 104 EDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 VLFIDE + L+ E + L MED + DL+V K + F Sbjct: 685 AKGGVLFIDEAYSLARGGENDFGKEAIDTLVKGMEDLREDLVV----ILAGYKDEMDDF- 739 Query: 156 LIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 L TNP LQ RF I Y E+L I ++ + G + D+ Sbjct: 740 ---------LKTNPGLQSRFNNHIDFPDYTSEELFMISEKIVESEGFTIADD 782 >gi|46122305|ref|XP_385706.1| hypothetical protein FG05530.1 [Gibberella zeae PH-1] Length = 821 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFFGPPGTGKTMLAKAVANECAANFISVKGP 564 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 VLLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|312149771|gb|ADQ29842.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi N40] Length = 560 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 25/228 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132 +GP + G+ + + N DV+ ID S+ I EEI++ PA+ + Sbjct: 66 --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123 Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 ++ ++ +A ++++ + I ATT L ++ R ++ Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 + ++++ + DEA IA +S G+ R A L ++ F + Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230 >gi|119590121|gb|EAW69715.1| nuclear VCP-like, isoform CRA_b [Homo sapiens] Length = 687 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 449 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 480 >gi|332251955|ref|XP_003275117.1| PREDICTED: nuclear valosin-containing protein isoform 1 [Nomascus leucogenys] Length = 855 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 617 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 648 >gi|326574344|gb|EGE24287.1| recombination factor protein RarA [Moraxella catarrhalis CO72] Length = 412 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ GQ S R L ++ G G+GKTTLA ++A +G Sbjct: 8 MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65 Query: 82 FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR S V + +L +L + + V+F+DEIHR + ++ L A+E ++ L+ Sbjct: 66 FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124 Query: 138 --VGEGPSARSVKINLSR 153 E PS LSR Sbjct: 125 GATTENPSFSVNNALLSR 142 >gi|325184659|emb|CCA19151.1| hypothetical protein SELMODRAFT_145748 [Albugo laibachii Nc14] Length = 799 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ A + + D+ V Sbjct: 510 VLFYGPPGCGKTLLAKAVANECQANFISVKGPELLTMWFGESEANVREVFDKARSAAPCV 569 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 570 LFFDELDSIA 579 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 237 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 296 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 297 IFIDEIDSIA 306 >gi|310789403|gb|EFQ24936.1| AAA family ATPase [Glomerella graminicola M1.001] Length = 819 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 534 VLFYGPPGTGKTMLAKAVANECSANFISVKGP 565 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 260 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 319 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 320 IFIDEIDSIA 329 >gi|255710811|ref|XP_002551689.1| KLTH0A05324p [Lachancea thermotolerans] gi|238933066|emb|CAR21247.1| KLTH0A05324p [Lachancea thermotolerans] Length = 832 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ NF S GP Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 555 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP V++K AG+ + L E+ + + Sbjct: 251 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 311 IFIDEIDSIA 320 >gi|242309929|ref|ZP_04809084.1| endopeptidase clp ATP-binding chain a [Helicobacter pullorum MIT 98-5489] gi|239523226|gb|EEQ63092.1| endopeptidase clp ATP-binding chain a [Helicobacter pullorum MIT 98-5489] Length = 737 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 18/108 (16%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFR-----------STSGPVIAKAG----DLAALLTN 102 LF GP G+GKT LA+ +A+ LG+NF S SG + A AG D +LT Sbjct: 478 LFSGPSGVGKTELAKEIAKALGINFERIDMSEYMEKYSISGLIGAPAGYVGYDKGGILTE 537 Query: 103 LEDRD---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 + ++ +L +DEI + V + M++ +L GE SV Sbjct: 538 MIKKNPHTLLLLDEIEKAHPDVLNLFLQVMDNAKLTDNNGESADFSSV 585 >gi|197103173|ref|YP_002128551.1| ATP-dependent protease LA [Phenylobacterium zucineum HLK1] gi|302425068|sp|B4RI01|LON_PHEZH RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|196480449|gb|ACG79976.1| ATP-dependent protease LA [Phenylobacterium zucineum HLK1] Length = 792 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVI--------------AKAGDLAALLT 101 + FVGPPG+GKT+L Q +AR + F R + G V A G++ + Sbjct: 357 LCFVGPPGVGKTSLGQSIARAMHRPFVRVSLGGVHDESEIRGHRRTYVGALPGNIIQAIR 416 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148 RD V+ +DEI ++S + E+L P A D L +V Sbjct: 417 KAGRRDCVMMLDEIDKMSAGIHGDPSAALLEVLDPEQNVAFRDNYL-----------AVP 465 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 +LSR IA + + PL+DR + I+L+ Y + + I +R Sbjct: 466 FDLSRVVFIATANMLDTIPGPLRDRMEV-IQLSGYTAGEKRQIAER 510 >gi|194386052|dbj|BAG59590.1| unnamed protein product [Homo sapiens] Length = 856 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 649 >gi|221057948|ref|XP_002261482.1| cell division cycle protein 48 homologue [Plasmodium knowlesi strain H] gi|194247487|emb|CAQ40887.1| cell division cycle protein 48 homologue,putative [Plasmodium knowlesi strain H] Length = 822 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 517 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 548 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ A L E+ + + Sbjct: 244 VLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAI 303 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 304 IFIDEIDSIA 313 >gi|167566373|ref|ZP_02359289.1| cell division control protein 48 ATPase of AAA family CDC48 subfamily [Burkholderia oklahomensis EO147] gi|167573485|ref|ZP_02366359.1| cell division control protein 48 ATPase of AAA family CDC48 subfamily [Burkholderia oklahomensis C6786] Length = 713 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 25/41 (60%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A A+ +L VGPPG GKT LA+ A E GVNF GP Sbjct: 484 RAGAKPSKGILLVGPPGCGKTWLAKAAANECGVNFIPVKGP 524 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +A VL GPPG GKT +A+ +A E F + SGP + Sbjct: 215 DAPKGVLLYGPPGCGKTLIARAIAHECDATFFALSGPEV 253 >gi|156843387|ref|XP_001644761.1| hypothetical protein Kpol_1020p9 [Vanderwaltozyma polyspora DSM 70294] gi|156115411|gb|EDO16903.1| hypothetical protein Kpol_1020p9 [Vanderwaltozyma polyspora DSM 70294] Length = 812 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VLF GPPG GKT LA+ VA E+ NF S GP + G+ + + ++ D+ V Sbjct: 516 VLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 575 Query: 109 LFIDEIHRLS 118 +F+DE+ ++ Sbjct: 576 VFLDELDSIA 585 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ + L E+ + + Sbjct: 243 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 302 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 303 IFIDEIDSIA 312 >gi|157126628|ref|XP_001654680.1| spermatogenesis associated factor [Aedes aegypti] gi|108873203|gb|EAT37428.1| spermatogenesis associated factor [Aedes aegypti] Length = 803 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108 +L GPPG GKT +A+ VA E G F +GP I +L E + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKKSPAI 297 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 298 IFIDEL 303 >gi|45643123|ref|NP_002524.2| nuclear valosin-containing protein-like isoform 1 [Homo sapiens] gi|32699415|sp|O15381|NVL_HUMAN RecName: Full=Nuclear valosin-containing protein-like; Short=NVLp; Short=Nuclear VCP-like protein gi|2406565|gb|AAB70457.1| nuclear VCP-like protein NVLp.2 [Homo sapiens] gi|119590120|gb|EAW69714.1| nuclear VCP-like, isoform CRA_a [Homo sapiens] Length = 856 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 649 >gi|116205431|ref|XP_001228526.1| hypothetical protein CHGG_10599 [Chaetomium globosum CBS 148.51] gi|88176727|gb|EAQ84195.1| hypothetical protein CHGG_10599 [Chaetomium globosum CBS 148.51] Length = 587 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 18/152 (11%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP TL+ GQ N L+ IE+ + + ++ G G GKTT+A+ +AR +G Sbjct: 165 MRPDTLDHVFGQDLVGPNGVLRSLIESDR-----VPSMILWGGSGTGKTTIARCIARRVG 219 Query: 80 VNF--RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F + + +A+ L A N R ++F DEIHR + +++ +E Sbjct: 220 CRFIELNATSTGVAECKKLFAEAANELGLTGRRTIIFCDEIHRFNKGQQDVFLKPVEAGT 279 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160 + L+ E PS R LSR FTL + T Sbjct: 280 ITLIGATTENPSFRVQAALLSRCRTFTLQSLT 311 >gi|156548829|ref|XP_001605497.1| PREDICTED: similar to ENSANGP00000022801 [Nasonia vitripennis] Length = 833 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 544 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCV 603 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 604 LFFDELDSIA 613 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 271 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 330 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 331 IFIDEL 336 >gi|119719589|ref|YP_920084.1| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5] gi|119524709|gb|ABL78081.1| AAA family ATPase, CDC48 subfamily [Thermofilum pendens Hrk 5] Length = 718 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 17/118 (14%) Query: 24 PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR E G +E A ++ +E E H VLF GPPG GKT LA+ V Sbjct: 175 PRITYEDIGDLEEAKQKIREMVELPLRHPELFKHLGIEPPKGVLFYGPPGTGKTLLAKAV 234 Query: 75 ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 A E G F + +GP I G+ L + + ++FIDEI ++ EE+ Sbjct: 235 ANETGAYFIAINGPEIMSKFYGESEQRLREIFEEATKNAPAIIFIDEIDAIAPKREEV 292 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 20/34 (58%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E NF GP I Sbjct: 490 ILLYGPPGTGKTLLAKAVATESEANFIGVKGPEI 523 >gi|91786827|ref|YP_547779.1| ATP-dependent protease La [Polaromonas sp. JS666] gi|91696052|gb|ABE42881.1| ATP-dependent protease La [Polaromonas sp. JS666] Length = 792 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L Q +AR LG F R + G V +A G + L Sbjct: 360 LCFVGPPGVGKTSLGQSIARALGRPFVRMSLGGVHDEAEIRGHRRTYIGAMPGIIVQSLR 419 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R V+ +DE+ +LS + E+L P D +G + +LS Sbjct: 420 KAGARHCVMMLDEVDKLSPSAQGDPSAALLEVLDPEQNATFRDNYLG-------LPFDLS 472 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 R IA + + P++DR + I L Y E+ I QR Sbjct: 473 RVVFIATANVIDQVPAPMRDRMEV-IDLPGYTQEEKLQIAQR 513 >gi|322709309|gb|EFZ00885.1| cell division control protein Cdc48 [Metarhizium anisopliae ARSEF 23] Length = 818 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 530 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 561 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 256 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 316 IFIDEIDSIA 325 >gi|303388207|ref|XP_003072338.1| Cdc48-like AAA ATPase [Encephalitozoon intestinalis ATCC 50506] gi|303301477|gb|ADM10978.1| Cdc48-like AAA ATPase [Encephalitozoon intestinalis ATCC 50506] Length = 780 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ + + +L R V Sbjct: 518 VLFYGPPGCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFARARGAAPCV 577 Query: 109 LFIDEIHRLS 118 LF DEI ++ Sbjct: 578 LFFDEIDSIA 587 Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ +A E G +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 304 Query: 109 LFIDEIHRLS 118 +FIDEI L+ Sbjct: 305 IFIDEIDALA 314 >gi|302308700|ref|NP_985705.2| AFR158Wp [Ashbya gossypii ATCC 10895] gi|299790753|gb|AAS53529.2| AFR158Wp [Ashbya gossypii ATCC 10895] Length = 832 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ NF S GP Sbjct: 525 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 556 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ + L E+ + + Sbjct: 252 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 311 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 312 IFIDEIDSIA 321 >gi|259483400|tpe|CBF78760.1| TPA: Cell division control protein 48 [Source:UniProtKB/Swiss-Prot;Acc:Q5AWS6] [Aspergillus nidulans FGSC A4] Length = 814 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 527 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 558 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 253 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 312 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 313 IFIDEIDSIA 322 >gi|281411727|ref|YP_003345806.1| Appr-1-p processing domain protein [Thermotoga naphthophila RKU-10] gi|281372830|gb|ADA66392.1| Appr-1-p processing domain protein [Thermotoga naphthophila RKU-10] Length = 599 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 90/231 (38%), Gaps = 33/231 (14%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79 LLRP+ E+F GQ + + K +L+ GPPG GKT++ ++ R Sbjct: 11 LLRPKDFEDFVGQDHIFGDKGILRRTLKT-GNMFSSILY-GPPGSGKTSVFSLLKRYFNG 68 Query: 80 --VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133 V ST V I L + +LF+DEIHRL+ + +L +E D Sbjct: 69 EVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLVSHVERGDIV 128 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L E PS V LSR + L L D EDL I++ Sbjct: 129 LVATTTENPSFAIVPALLSRCRI--------LYFKKLSD-------------EDLMKILK 167 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 + ++ L + + A I S G R +LL + + K +T E Sbjct: 168 KATRVLKLDLEETAEKAIVKHSEGDAR---KLLNTLEIVYQAFKNKKVTLE 215 >gi|149246888|ref|XP_001527869.1| cell division control protein 48 [Lodderomyces elongisporus NRRL YB-4239] gi|146447823|gb|EDK42211.1| cell division control protein 48 [Lodderomyces elongisporus NRRL YB-4239] Length = 839 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ NF S GP Sbjct: 525 VLFFGPPGTGKTLLAKAVATEVSANFISVKGP 556 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 252 ILMYGPPGTGKTIMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 311 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 312 IFIDEIDSIA 321 >gi|111219719|ref|YP_710513.1| putative sporulation protein [Frankia alni ACN14a] gi|111147251|emb|CAJ58901.1| putative sporulation protein (partial match) [Frankia alni ACN14a] Length = 1222 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 70/165 (42%), Gaps = 33/165 (20%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-AKAGDL-AALLTNLEDR------- 106 H+LF+GPPG GKTT+A++V + G V+ K DL A L E + Sbjct: 1003 HLLFLGPPGTGKTTVARLVGEMFAALGLLSKGHVVEVKREDLVAGYLGQTEQKTSDAIAK 1062 Query: 107 ---DVLFIDEIHRLSIIVEE--------ILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 VLFIDE + L+ + L PAME+ + L+V S++ L+ Sbjct: 1063 AIGGVLFIDEAYALARGGPQDFGREAINTLVPAMENLRGRLVVIAAGYPGSMREFLA--- 1119 Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 + L RFG I YE DL I++R A G Sbjct: 1120 ----------VNEGLPSRFGETIEFPDYEPNDLVEILERMAGAAG 1154 >gi|91086235|ref|XP_966692.1| PREDICTED: similar to transitional endoplasmic reticulum ATPase TER94 isoform 1 [Tribolium castaneum] gi|270011017|gb|EFA07465.1| transitional endoplasmic reticulum ATPase TER94 [Tribolium castaneum] Length = 803 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 571 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 572 LFFDELDSIA 581 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ D + Sbjct: 239 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAI 298 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 299 IFIDELDAIA 308 >gi|82538797|ref|XP_723826.1| cell division cycle protein 48 [Plasmodium yoelii yoelii str. 17XNL] gi|23478257|gb|EAA15391.1| cell division cycle protein 48 homolog [Plasmodium yoelii yoelii] Length = 815 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 515 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 546 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ A L E+ + + Sbjct: 242 VLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAI 301 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 302 IFIDEIDSIA 311 >gi|332031336|gb|EGI70849.1| Transitional endoplasmic reticulum ATPase TER94 [Acromyrmex echinatior] Length = 832 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 543 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCV 602 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 603 LFFDELDSIA 612 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 270 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 303 >gi|302816419|ref|XP_002989888.1| hypothetical protein SELMODRAFT_269585 [Selaginella moellendorffii] gi|300142199|gb|EFJ08901.1| hypothetical protein SELMODRAFT_269585 [Selaginella moellendorffii] Length = 805 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCV 579 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 580 LFFDELDSIA 589 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 247 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 306 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 307 IFIDEIDSIA 316 >gi|60735077|dbj|BAD91024.1| valosin containing protein-1 [Eisenia fetida] gi|147225256|dbj|BAF62455.1| valosine containing peptide-1 [Eisenia fetida] Length = 808 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARSAAPCV 571 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 572 LFFDELDSIA 581 Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 239 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 298 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 299 IFIDEL 304 >gi|39940094|ref|XP_359584.1| cell division control protein Cdc48 [Magnaporthe oryzae 70-15] gi|145010540|gb|EDJ95196.1| cell division control protein Cdc48 [Magnaporthe oryzae 70-15] Length = 820 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|296808211|ref|XP_002844444.1| DNA-dependent ATPase MGS1 [Arthroderma otae CBS 113480] gi|238843927|gb|EEQ33589.1| DNA-dependent ATPase MGS1 [Arthroderma otae CBS 113480] Length = 541 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 70/153 (45%), Gaps = 28/153 (18%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP+TL+E GQ N L+ IE D V P GKTT+A+V+A +G Sbjct: 144 MRPQTLDEVCGQELVGKNGVLRGLIER--------DRV-----PSTGKTTVARVIANMVG 190 Query: 80 VNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 F STS V A+ L A N + ++F DEIHR S +++ +E Sbjct: 191 SRFVEINSTSSGV-AECKKLFAEARNELSLTGRKTIIFCDEIHRFSKAQQDVFLGPVESG 249 Query: 133 QLDLM--VGEGPSARSVKINLSR---FTLIAAT 160 Q+ L+ E PS + LSR FTL T Sbjct: 250 QVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 282 >gi|242761705|ref|XP_002340232.1| cell division control protein Cdc48 [Talaromyces stipitatus ATCC 10500] gi|218723428|gb|EED22845.1| cell division control protein Cdc48 [Talaromyces stipitatus ATCC 10500] Length = 822 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFYGPPGTGKTMLAKAVANECSANFISVKGP 564 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|209880048|ref|XP_002141464.1| transitional endoplasmic reticulum ATPase protein [Cryptosporidium muris RN66] gi|209557070|gb|EEA07115.1| transitional endoplasmic reticulum ATPase protein, putative [Cryptosporidium muris RN66] Length = 802 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 520 VLFYGPPGCGKTLLAKAVASECSANFISVKGP 551 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108 VL GPPG GKT +A+ VA E G F +GP V++K G+L E + Sbjct: 247 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEVMSKMAGEAEGNLRRAFEEAEKNSPAI 306 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 307 IFIDEIDSIA 316 >gi|168034023|ref|XP_001769513.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679224|gb|EDQ65674.1| predicted protein [Physcomitrella patens subsp. patens] Length = 816 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 524 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCV 583 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 584 LFFDELDSIA 593 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 251 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 310 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 311 IFIDEIDSIA 320 >gi|328783535|ref|XP_392892.3| PREDICTED: transitional endoplasmic reticulum ATPase TER94 isoform 1 [Apis mellifera] Length = 811 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARAAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 298 IFIDEL 303 >gi|326561726|gb|EGE12061.1| recombination factor protein RarA [Moraxella catarrhalis 7169] gi|326569052|gb|EGE19121.1| recombination factor protein RarA [Moraxella catarrhalis BC1] Length = 412 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ GQ S R L ++ G G+GKTTLA ++A +G Sbjct: 8 MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65 Query: 82 FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 FR S V + +L +L + + V+F+DEIHR + ++ L A+E ++ L+ Sbjct: 66 FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124 Query: 138 --VGEGPSARSVKINLSR 153 E PS LSR Sbjct: 125 GATTENPSFSVNNALLSR 142 >gi|322699632|gb|EFY91392.1| cell division control protein Cdc48 [Metarhizium acridum CQMa 102] Length = 818 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 530 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 561 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 256 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 316 IFIDEIDSIA 325 >gi|270003538|gb|EEZ99985.1| hypothetical protein TcasGA2_TC002784 [Tribolium castaneum] Length = 876 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 628 VLLCGPPGCGKTLLAKAMANEAGINFISVKGP 659 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109 L GPPG GKT LA +A E+GV + P V +G+ + L +R +L Sbjct: 246 LLHGPPGCGKTLLANAIAGEIGVPLLKVAAPELVAGVSGESEERIRELFERAIFSTPCIL 305 Query: 110 FIDEIHRLS 118 FIDEI ++ Sbjct: 306 FIDEIDAIT 314 >gi|168031055|ref|XP_001768037.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680675|gb|EDQ67109.1| predicted protein [Physcomitrella patens subsp. patens] Length = 812 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTMLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|168037127|ref|XP_001771056.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677589|gb|EDQ64057.1| predicted protein [Physcomitrella patens subsp. patens] Length = 820 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 530 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCV 589 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 590 LFFDELDSIA 599 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 257 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 316 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 317 IFIDEIDSIA 326 >gi|229582087|ref|YP_002840486.1| replication factor C large subunit [Sulfolobus islandicus Y.N.15.51] gi|259585461|sp|C3NHF4|RFCL_SULIN RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|228012803|gb|ACP48564.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.N.15.51] Length = 405 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 6/61 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEA---AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RPR+L++ Q A L+ +IE+ K A+A VL GPPG+GKTTLA+ VA + Sbjct: 9 RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKA---VLLHGPPGVGKTTLAEAVAHDYN 65 Query: 80 V 80 + Sbjct: 66 L 66 >gi|156101027|ref|XP_001616207.1| cell division cycle protein 48 homologue [Plasmodium vivax SaI-1] gi|148805081|gb|EDL46480.1| cell division cycle protein 48 homologue, putative [Plasmodium vivax] Length = 822 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 517 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 548 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ A L E+ + + Sbjct: 244 VLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAI 303 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 304 IFIDEIDSIA 313 >gi|6320077|ref|NP_010157.1| Cdc48p [Saccharomyces cerevisiae S288c] gi|1705679|sp|P25694|CDC48_YEAST RecName: Full=Cell division control protein 48 gi|1431189|emb|CAA98694.1| CDC48 [Saccharomyces cerevisiae] gi|1449400|emb|CAA40276.1| CDC48p [Saccharomyces cerevisiae] gi|285810910|tpg|DAA11734.1| TPA: Cdc48p [Saccharomyces cerevisiae S288c] Length = 835 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ NF S GP Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 555 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ + L E+ + + Sbjct: 251 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 311 IFIDEIDSIA 320 >gi|67900534|ref|XP_680523.1| hypothetical protein AN7254.2 [Aspergillus nidulans FGSC A4] gi|74680687|sp|Q5AWS6|CDC48_EMENI RecName: Full=Cell division control protein 48 gi|40741970|gb|EAA61160.1| hypothetical protein AN7254.2 [Aspergillus nidulans FGSC A4] Length = 827 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 540 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 571 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 266 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 325 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 326 IFIDEIDSIA 335 >gi|295664474|ref|XP_002792789.1| cell division cycle protein [Paracoccidioides brasiliensis Pb01] gi|226278903|gb|EEH34469.1| cell division cycle protein [Paracoccidioides brasiliensis Pb01] Length = 820 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 531 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 562 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 257 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 317 IFIDEIDSIA 326 >gi|225684527|gb|EEH22811.1| cell division cycle protein [Paracoccidioides brasiliensis Pb03] Length = 820 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 531 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 562 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 257 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 317 IFIDEIDSIA 326 >gi|168058314|ref|XP_001781154.1| predicted protein [Physcomitrella patens subsp. patens] gi|162667391|gb|EDQ54022.1| predicted protein [Physcomitrella patens subsp. patens] Length = 815 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 524 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCV 583 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 584 LFFDELDSIA 593 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 251 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 310 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 311 IFIDEIDSIA 320 >gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropyrum pernix K1] gi|5105048|dbj|BAA80362.1| cell division control protein 48, AAA family [Aeropyrum pernix K1] Length = 726 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 16/115 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ EA ++ +E E H +L GPPG GKT LA+ +A E Sbjct: 182 TWEDIGDLEEAKERIREIVELPMKHPEIFKHLGIEPPKGILLYGPPGTGKTLLAKALANE 241 Query: 78 LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124 +G F S +GP I G+ L + E+ ++FIDEI ++ EE+ Sbjct: 242 IGAYFISINGPEIMSKYYGESEQRLREIFKEAEENAPSIIFIDEIDAIAPKREEV 296 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E G NF + GP I Sbjct: 496 VLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 529 >gi|163846381|ref|YP_001634425.1| ATP-dependent protease La [Chloroflexus aurantiacus J-10-fl] gi|222524147|ref|YP_002568618.1| ATP-dependent protease La [Chloroflexus sp. Y-400-fl] gi|302425041|sp|A9WGB5|LON_CHLAA RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|163667670|gb|ABY34036.1| ATP-dependent protease La [Chloroflexus aurantiacus J-10-fl] gi|222448026|gb|ACM52292.1| ATP-dependent protease La [Chloroflexus sp. Y-400-fl] Length = 827 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 101/244 (41%), Gaps = 51/244 (20%) Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNL 103 FVGPPG+GKT+L Q +AR LG +F R + G V +A G + L Sbjct: 383 FVGPPGVGKTSLGQSIARALGRSFVRMSLGGVRDEAELRGFRRTYIGSQPGRIIQELRRA 442 Query: 104 EDRD-VLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 D V+ +DEI +L I + E+L P D + ++ +LSR Sbjct: 443 GTADPVILLDEIDKLGIDYRGDPAAALLEVLDPEQNHTFTDHYL-------NLPFDLSRV 495 Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT------IVQRGAKLTGLAVTDEAA 208 +A + L+DR + I L+ Y IED K +V R + GL + Sbjct: 496 LFLATANTWDTVPPALRDRMEV-IELSGY-IEDEKVQIAQIHLVPRQLRANGLRPEEAVV 553 Query: 209 CEIAMRS-----------RGTPRIAGRLLRRV-RDFAEVAHAKTITREIADAALLRLAID 256 E A+R R R G +LR+V R +E T + DAA +R A+ Sbjct: 554 TEDAIRCIINEYTREAGVRNLERSIGAVLRKVARRLSEGEIDPANTPFVVDAAFVRAALG 613 Query: 257 KMGF 260 + F Sbjct: 614 RPRF 617 >gi|67613096|ref|XP_667275.1| cell division cycle protein 48 [Cryptosporidium hominis TU502] gi|54658389|gb|EAL37040.1| cell division cycle protein 48 [Cryptosporidium hominis] Length = 814 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 528 VLFYGPPGCGKTLLAKAVASECSANFISVKGP 559 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108 VL GPPG GKT +A+ VA E G F +GP V++K G+L E + Sbjct: 255 VLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAEGNLRRAFEEAEKNSPAI 314 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 315 IFIDEIDSIA 324 >gi|332251957|ref|XP_003275118.1| PREDICTED: nuclear valosin-containing protein isoform 2 [Nomascus leucogenys] Length = 749 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 511 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 542 >gi|322801676|gb|EFZ22299.1| hypothetical protein SINV_06607 [Solenopsis invicta] Length = 793 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 504 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCV 563 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 564 LFFDELDSIA 573 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 231 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 264 >gi|320580528|gb|EFW94750.1| AAA family ATPase [Pichia angusta DL-1] Length = 832 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VLF GPPG GKT LA+ VA E+ NF S GP + G+ + + ++ D+ V Sbjct: 524 VLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 583 Query: 109 LFIDEIHRLS 118 +F+DE+ ++ Sbjct: 584 VFLDELDSIA 593 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L + Sbjct: 251 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 310 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 311 IFIDEIDSIA 320 >gi|288927650|ref|ZP_06421497.1| cell division protein FtsH [Prevotella sp. oral taxon 317 str. F0108] gi|288330484|gb|EFC69068.1| cell division protein FtsH [Prevotella sp. oral taxon 317 str. F0108] Length = 667 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 108/261 (41%), Gaps = 45/261 (17%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ A ++ +E K+ + D L VGPPG GKT LA+ VA E Sbjct: 193 TFKDVAGQEGAKQEVQEIVEFLKSPQKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 252 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130 GV F S SG V A + L +++ ++FIDEI + + P+M Sbjct: 253 GVPFFSMSGSDFVEMFVGVGASRVRDLFHQAKEKSPCIIFIDEIDAVGRARSK--NPSM- 309 Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177 G R +N S ++AAT R +L + L RF Sbjct: 310 ---------GGNDERENTLNALLTEMDGFGTNSGVIILAATNRADMLDSALLRAGRFDRQ 360 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 I ++ ++ + K I Q + V ++ +I SR TP +G + V + A + Sbjct: 361 INVDLPDLPERKQIFQVHLR----PVKVDSTVDIDFLSRQTPGFSGADIANVCNEAALIA 416 Query: 238 AKTITREIADAALLRLAIDKM 258 A+ ++ + L A+D++ Sbjct: 417 ARHNSKSVGKQDFLD-AVDRI 436 >gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM 12286] gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286] Length = 322 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ I RP+TL + G L+ +++ L H+LF GP G GKTT A Sbjct: 9 REEVWIEKYRPQTLSDVVGHETIVERLQSYVDRND-----LSHMLFAGPAGTGKTTSATA 63 Query: 74 VAREL 78 +AREL Sbjct: 64 IAREL 68 >gi|227500203|ref|ZP_03930272.1| ATP dependent protease ATP-binding subunit [Anaerococcus tetradius ATCC 35098] gi|227217725|gb|EEI83029.1| ATP dependent protease ATP-binding subunit [Anaerococcus tetradius ATCC 35098] Length = 404 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 29/131 (22%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD----------HVLFVG 61 D+ L P+ ++EF GQ +A L V + R + + ++L +G Sbjct: 56 GDVELSTPKEIKEFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSEIELQKSNILMLG 115 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN--------------LEDRD 107 P G GKT LAQ +AR+L V F + +AG + + N L +R Sbjct: 116 PTGSGKTLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIELAERG 175 Query: 108 VLFIDEIHRLS 118 ++++DEI +++ Sbjct: 176 IIYVDEIDKIT 186 >gi|226294184|gb|EEH49604.1| cell division control protein [Paracoccidioides brasiliensis Pb18] Length = 820 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 531 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 562 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 257 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 317 IFIDEIDSIA 326 >gi|225436524|ref|XP_002276976.1| PREDICTED: similar to Cell division cycle protein 48 homolog [Vitis vinifera] Length = 802 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTKWFGESEANVREIFDKARQSASCV 578 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 579 LFFDELDSIA 588 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108 +L GPPG GKT +A+ VA E G F +GP I G+L E + Sbjct: 246 ILLYGPPGSGKTLIAKAVANETGAFFFCINGPEIMSKLAGESEGNLRKAFEEAEKNAPSI 305 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 306 VFIDEIDSIA 315 >gi|194386940|dbj|BAG59836.1| unnamed protein product [Homo sapiens] Length = 667 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 429 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 460 >gi|160878536|ref|YP_001557504.1| ATP-dependent protease ATP-binding subunit [Clostridium phytofermentans ISDg] gi|189082493|sp|A9KSX1|CLPX_CLOPH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|160427202|gb|ABX40765.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium phytofermentans ISDg] Length = 433 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 28/136 (20%) Query: 11 NVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA---EALD------H 56 +V++ + I+LL+P+ ++EF GQ EA L V + R + LD + Sbjct: 54 DVAESASGINLLKPKEIKEFLDQYVIGQEEAKKVLSVSVYNHYKRVLSEKDLDVELQKSN 113 Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-- 107 +L +GP G GKT +AQ +A+ L V F + +AG + + N+ D D Sbjct: 114 ILMIGPTGSGKTYVAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADYDIE 173 Query: 108 -----VLFIDEIHRLS 118 +++IDEI +++ Sbjct: 174 RAQYGIIYIDEIDKIT 189 >gi|116207434|ref|XP_001229526.1| hypothetical protein CHGG_03010 [Chaetomium globosum CBS 148.51] gi|88183607|gb|EAQ91075.1| hypothetical protein CHGG_03010 [Chaetomium globosum CBS 148.51] Length = 821 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 535 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 566 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 261 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 320 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 321 IFIDEIDSIA 330 >gi|66361858|ref|XP_627893.1| CDC48 like AAA ATPase ortholog [Cryptosporidium parvum Iowa II] gi|46227655|gb|EAK88590.1| CDC48 like AAA ATPase ortholog [Cryptosporidium parvum Iowa II] Length = 820 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 534 VLFYGPPGCGKTLLAKAVASECSANFISVKGP 565 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108 VL GPPG GKT +A+ VA E G F +GP V++K G+L E + Sbjct: 261 VLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAEGNLRRAFEEAEKNSPAI 320 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 321 IFIDEIDSIA 330 >gi|309751686|gb|ADO81670.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus influenzae R2866] Length = 411 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N E Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 172 EKAEKGIIYIDEIDKIS 188 >gi|330805727|ref|XP_003290830.1| cell division cycle protein 48 [Dictyostelium purpureum] gi|325079040|gb|EGC32661.1| cell division cycle protein 48 [Dictyostelium purpureum] Length = 792 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + L D+ V Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCV 571 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 572 LFFDELDSIA 581 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 239 ILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 298 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 299 IFIDEIDSIA 308 >gi|312136661|ref|YP_004003998.1| replication factor c small subunit [Methanothermus fervidus DSM 2088] gi|311224380|gb|ADP77236.1| replication factor C small subunit [Methanothermus fervidus DSM 2088] Length = 318 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L++ Q S LK ++E + L ++LF GP G+GKTT+A +ARE+ Sbjct: 10 RPKVLDDVVNQKHVVSRLKKYVEK-----KTLPNLLFAGPAGVGKTTVALALAREI 60 >gi|302770437|ref|XP_002968637.1| hypothetical protein SELMODRAFT_145748 [Selaginella moellendorffii] gi|300163142|gb|EFJ29753.1| hypothetical protein SELMODRAFT_145748 [Selaginella moellendorffii] Length = 809 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 524 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCV 583 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 584 LFFDELDSIA 593 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 251 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 310 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 311 IFIDEIDSIA 320 >gi|297461182|ref|XP_611864.5| PREDICTED: nuclear VCP-like [Bos taurus] Length = 917 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 679 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 710 >gi|261189835|ref|XP_002621328.1| cell division cycle protein 48 [Ajellomyces dermatitidis SLH14081] gi|239591564|gb|EEQ74145.1| cell division cycle protein 48 [Ajellomyces dermatitidis SLH14081] gi|239612906|gb|EEQ89893.1| cell division control protein Cdc48 [Ajellomyces dermatitidis ER-3] gi|327352078|gb|EGE80935.1| cell division cycle protein 48 [Ajellomyces dermatitidis ATCC 18188] Length = 822 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 532 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 563 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 258 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 317 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 318 IFIDEIDSIA 327 >gi|169829332|ref|YP_001699490.1| hypothetical protein Bsph_3886 [Lysinibacillus sphaericus C3-41] gi|168993820|gb|ACA41360.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 420 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 49/258 (18%) Query: 22 LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP TL+E G + N ++ + E + +L G PG+GKT++A +A + Sbjct: 1 MRPLTLDEIVGHQDFIGPNTALY---KMIQNEHVPSMLLYGEPGIGKTSIANAIAGSSQL 57 Query: 81 NFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 F + + K D+ ++ + + +LF+DEIHR + + ++ L P +E+ Sbjct: 58 PFFALNATRAGKK-DVEDIVQEARISGKVLLFLDEIHRFNKLQQDTLLPHVEN------- 109 Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLKTI 191 LI ATT NP D R G +L E+L + Sbjct: 110 -------------GSIVLIGATTE-----NPYHDVNPAIRSRCGEIYQLKRLTKENLMEL 151 Query: 192 VQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 V+ RG +TD IA + G R A LL + ++ TI + Sbjct: 152 VEKALADEKRGLGKYHFILTDSQIERIAEAANGDARKALTLLESIYYASDEVEGPTIAAD 211 Query: 245 -IADAALLRLAI--DKMG 259 I D + R+ + DK G Sbjct: 212 HIIDHLISRIGVYGDKKG 229 >gi|156848053|ref|XP_001646909.1| hypothetical protein Kpol_2000p15 [Vanderwaltozyma polyspora DSM 70294] gi|156117591|gb|EDO19051.1| hypothetical protein Kpol_2000p15 [Vanderwaltozyma polyspora DSM 70294] Length = 823 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ NF S GP Sbjct: 523 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 554 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ + L E+ + + Sbjct: 250 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 309 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 310 IFIDEIDSIA 319 >gi|91079282|ref|XP_972572.1| PREDICTED: similar to Nuclear valosin-containing protein-like (Nuclear VCP-like protein) (NVLp) [Tribolium castaneum] Length = 822 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 574 VLLCGPPGCGKTLLAKAMANEAGINFISVKGP 605 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109 L GPPG GKT LA +A E+GV + P V +G+ + L +R +L Sbjct: 246 LLHGPPGCGKTLLANAIAGEIGVPLLKVAAPELVAGVSGESEERIRELFERAIFSTPCIL 305 Query: 110 FIDEI 114 FIDEI Sbjct: 306 FIDEI 310 >gi|84997856|ref|XP_953649.1| metalloprotease/cell division cycle protein (FtsH ) [Theileria annulata] gi|65304646|emb|CAI72971.1| metalloprotease/cell division cycle protein (FtsH homologue), putative [Theileria annulata] Length = 805 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L VGPPG GKT LA+ VA E G+ F TSGP Sbjct: 267 ILLVGPPGTGKTMLAKAVATETGIPFIYTSGP 298 >gi|297661889|ref|XP_002809450.1| PREDICTED: nuclear valosin-containing protein-like, partial [Pongo abelii] Length = 728 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 619 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 650 >gi|288918178|ref|ZP_06412534.1| AAA ATPase central domain protein [Frankia sp. EUN1f] gi|288350454|gb|EFC84675.1| AAA ATPase central domain protein [Frankia sp. EUN1f] Length = 1223 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 88/208 (42%), Gaps = 46/208 (22%) Query: 25 RTLEEFTGQVEA---CSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVV 74 R L TG E S+L + + +ARA+A H++F GPPG GKTT+A++ Sbjct: 960 RRLHAMTGLAEVKREVSDLVDLLASVQARADAGLPAPAVSRHLVFAGPPGTGKTTVARLY 1019 Query: 75 ARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDR---DVLFIDEIHRLSIIVE 122 L +G ++ A G AA T + D VLFIDE + LS + Sbjct: 1020 GELLAAMGVLRTGQLVEVARADLVGRYVGHTAAKTTEVFDSARGGVLFIDEAYALSARGD 1079 Query: 123 ---------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQD 172 + L MED + D++V A ++ +F L +N L Sbjct: 1080 GADFGREAIDTLVKLMEDHRDDVVV----IAAGYTADMEQF----------LASNAGLAS 1125 Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 RF IR + Y ++L I + A+ +G Sbjct: 1126 RFSHRIRFSSYSADELVAIFESLAQASG 1153 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 68/164 (41%), Gaps = 42/164 (25%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA-GDLAA---------LLTNLED 105 HV+F GPPG GKTT+A++ + L +G ++ A DL A E+ Sbjct: 720 HVVFAGPPGTGKTTVARLFGKILAALGVLETGQLVEVARADLVAEHVGGTAVRTTAKFEE 779 Query: 106 R--DVLFIDEIHRLSII---------VEEILYPAMEDFQLDLMV---GEGPSARSVKINL 151 +LFIDE + L+ + L MED + +++V G P RS Sbjct: 780 AVGGILFIDEAYTLAPSDGSHDFGREAIDTLVKLMEDRRDEVVVIVAGYSPQMRSF---- 835 Query: 152 SRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194 L NP LQ RF I + Y +L TIV+R Sbjct: 836 -------------LAANPGLQSRFSRTIEFDSYTSAELVTIVER 866 >gi|240274705|gb|EER38221.1| cell division cycle protein [Ajellomyces capsulatus H143] Length = 461 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 172 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 203 >gi|260943992|ref|XP_002616294.1| cell division control protein 48 [Clavispora lusitaniae ATCC 42720] gi|238849943|gb|EEQ39407.1| cell division control protein 48 [Clavispora lusitaniae ATCC 42720] Length = 825 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ NF S GP Sbjct: 523 VLFFGPPGTGKTLLAKAVATEVSANFISVKGP 554 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 250 ILMYGPPGTGKTIMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 309 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 310 IFIDEIDSIA 319 >gi|221102479|ref|XP_002155686.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase, partial [Hydra magnipapillata] Length = 428 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 138 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARMAAPCV 197 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 198 LFFDELDSIA 207 >gi|198418753|ref|XP_002130650.1| PREDICTED: similar to nuclear VCP-like [Ciona intestinalis] Length = 779 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 535 VLLAGPPGCGKTLLAKAIANESGINFISVKGP 566 >gi|190347960|gb|EDK40330.2| cell division control protein 48 [Meyerozyma guilliermondii ATCC 6260] Length = 825 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VLF GPPG GKT LA+ VA E+ NF S GP + G+ + + ++ D+ V Sbjct: 523 VLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 582 Query: 109 LFIDEIHRLS 118 +F+DE+ ++ Sbjct: 583 VFLDELDSIA 592 Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 250 ILMYGPPGTGKTVMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSI 309 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 310 IFIDEIDSIA 319 >gi|147920787|ref|YP_685407.1| cell division cycle protein 48 [uncultured methanogenic archaeon RC-I] gi|110620803|emb|CAJ36081.1| cell division cycle protein 48 [uncultured methanogenic archaeon RC-I] Length = 743 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 16/115 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ IE E VL GPPG GKT LA+ VA E Sbjct: 190 TYEDIGGLREEVQRVREMIELPMKHPELFQRLGIDPPKGVLLHGPPGTGKTLLAKAVANE 249 Query: 78 LGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD----VLFIDEIHRLSIIVEEI 124 G F S +GP I G+ L + + RD ++FIDE+ ++ EE+ Sbjct: 250 CGAEFYSIAGPEIMSKYYGESEQRLREIFEQARDSAPSIIFIDELDSIAPKREEV 304 >gi|45643125|ref|NP_996671.1| nuclear valosin-containing protein-like isoform 2 [Homo sapiens] gi|2406580|gb|AAB70460.1| nuclear VCP-like protein NVLp.1 [Homo sapiens] gi|119590122|gb|EAW69716.1| nuclear VCP-like, isoform CRA_c [Homo sapiens] Length = 750 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 512 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 543 >gi|37519811|ref|NP_923188.1| cell division control protein CDC48-like protein [Gloeobacter violaceus PCC 7421] gi|35210802|dbj|BAC88183.1| gll0242 [Gloeobacter violaceus PCC 7421] Length = 574 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 52/121 (42%), Gaps = 33/121 (27%) Query: 23 RPRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQV 73 RP+ LE G E LK +E + E L+ VL VGPPG GKT A+ Sbjct: 50 RPQPYLEGVGGLGEVLVTLKELVELPLKKPEVLEQLGLEPVRGVLLVGPPGTGKTLTARA 109 Query: 74 VARELGVNFRSTSGP----------------VIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 +A +LGV F + GP + AKA LA L LFIDEI L Sbjct: 110 LAEQLGVRFLAIIGPEMMGKYYGEAESRLRGLFAKAARLAPCL--------LFIDEIDGL 161 Query: 118 S 118 + Sbjct: 162 A 162 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 25/41 (60%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A A+A +L GPPG GKT LA+ VA + NF + GP Sbjct: 348 RAGAKAPRGILLYGPPGTGKTLLARAVASQARANFIAVKGP 388 >gi|307211146|gb|EFN87364.1| Transitional endoplasmic reticulum ATPase TER94 [Harpegnathos saltator] Length = 796 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 507 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCV 566 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 567 LFFDELDSIA 576 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 239 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 272 >gi|307174120|gb|EFN64778.1| Transitional endoplasmic reticulum ATPase TER94 [Camponotus floridanus] Length = 801 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCV 571 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 572 LFFDELDSIA 581 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 239 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 272 >gi|145628435|ref|ZP_01784236.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 22.1-21] gi|144980210|gb|EDJ89869.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 22.1-21] Length = 396 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N E Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 172 EKAEKGIIYIDEIDKIS 188 >gi|145537570|ref|XP_001454496.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124422262|emb|CAK87099.1| unnamed protein product [Paramecium tetraurelia] Length = 817 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ + + + D+ V Sbjct: 526 VLFYGPPGCGKTLLAKAVASECSANFISIKGPELLTMWFGESESNVREVFDKARQASPCV 585 Query: 109 LFIDEIHRLSI 119 LF DE+ +++ Sbjct: 586 LFFDELDSIAV 596 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108 VL GPPG GKT +A+ VA E G F +GP I G+L E + Sbjct: 253 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGEAEGNLRKAFEEAEKNSPAI 312 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ E++ Sbjct: 313 IFIDEIDSIAPKREKV 328 >gi|50427157|ref|XP_462191.1| DEHA2G14960p [Debaryomyces hansenii CBS767] gi|49657861|emb|CAG90683.1| DEHA2G14960p [Debaryomyces hansenii] Length = 831 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ NF S GP Sbjct: 523 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 554 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L + Sbjct: 250 ILMYGPPGTGKTVMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 309 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 310 IFIDEIDSIA 319 >gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica] gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica] Length = 358 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP TL++ TG + LK + K H+LF GPPG GKT+ VARE+ G + Sbjct: 36 RPDTLDDVTGHEGVVTTLKKLLANKK-----FPHLLFYGPPGTGKTSTILAVAREIYGPS 90 Query: 82 FRS 84 ++S Sbjct: 91 YKS 93 >gi|114330973|ref|YP_747195.1| ATP-dependent protease La [Nitrosomonas eutropha C91] gi|114307987|gb|ABI59230.1| ATP-dependent protease La [Nitrosomonas eutropha C91] Length = 791 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 69/162 (42%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 + FVGPPG+GKT+L Q +AR L F S V A G++ L Sbjct: 357 LCFVGPPGVGKTSLGQSIARALQRPFVRVSLGGIHDEAEMRGHRRTYVGAMPGNIVQNLR 416 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R+ V+ +DEI ++ S + EIL P D +G V +LS Sbjct: 417 KAGARNCVMMLDEIDKMTASAHGDPSAALLEILDPEQNATFRDNYLG-------VPFDLS 469 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 R IA + ++ P++DR I I L Y E+ I QR Sbjct: 470 RVVFIATANVIDQVSPPVRDRMEI-IDLPGYTPEEKLQIAQR 510 >gi|71034003|ref|XP_766643.1| cell division protein FtsH [Theileria parva strain Muguga] gi|68353600|gb|EAN34360.1| cell division protein FtsH, putative [Theileria parva] Length = 806 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L VGPPG GKT LA+ VA E G+ F TSGP Sbjct: 267 ILLVGPPGTGKTMLAKAVATETGIPFIYTSGP 298 >gi|255729690|ref|XP_002549770.1| cell division control protein 48 [Candida tropicalis MYA-3404] gi|240132839|gb|EER32396.1| cell division control protein 48 [Candida tropicalis MYA-3404] Length = 826 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VLF GPPG GKT LA+ VA E+ NF S GP + G+ + + ++ D+ V Sbjct: 525 VLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 584 Query: 109 LFIDEIHRLS 118 +F+DE+ ++ Sbjct: 585 VFLDELDSIA 594 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L + Sbjct: 252 ILMYGPPGTGKTIMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 311 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 312 IFIDEIDSIA 321 >gi|151941877|gb|EDN60233.1| cell division cycle-related protein [Saccharomyces cerevisiae YJM789] gi|190405128|gb|EDV08395.1| cell division control protein 48 [Saccharomyces cerevisiae RM11-1a] gi|256274085|gb|EEU08996.1| Cdc48p [Saccharomyces cerevisiae JAY291] gi|259145118|emb|CAY78382.1| Cdc48p [Saccharomyces cerevisiae EC1118] gi|323349430|gb|EGA83654.1| Cdc48p [Saccharomyces cerevisiae Lalvin QA23] gi|323355818|gb|EGA87631.1| Cdc48p [Saccharomyces cerevisiae VL3] Length = 835 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ NF S GP Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 555 Score = 38.9 bits (89), Expect = 0.98, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ + L E+ + + Sbjct: 251 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 311 IFIDEIDSIA 320 >gi|309364944|emb|CAP23560.2| hypothetical protein CBG_03070 [Caenorhabditis briggsae AF16] Length = 865 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 576 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 577 LFFDELDSIA 586 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108 +L GPPG GKT +A+ VA E G F +GP V++K +L E + Sbjct: 247 ILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAI 306 Query: 109 LFIDEI 114 LFIDEI Sbjct: 307 LFIDEI 312 >gi|289621142|emb|CBI51925.1| unnamed protein product [Sordaria macrospora] Length = 824 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 535 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 566 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 261 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 320 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 321 IFIDEIDSIA 330 >gi|242008814|ref|XP_002425193.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508909|gb|EEB12455.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 804 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCV 571 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 572 LFFDELDSIA 581 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ D + Sbjct: 239 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAI 298 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 299 IFIDEL 304 >gi|126132366|ref|XP_001382708.1| Cell division control protein 48 [Scheffersomyces stipitis CBS 6054] gi|126094533|gb|ABN64679.1| Cell division control protein 48 [Scheffersomyces stipitis CBS 6054] Length = 829 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ NF S GP Sbjct: 525 VLFFGPPGTGKTLLAKAVATEVSANFISVKGP 556 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L + Sbjct: 252 ILMYGPPGTGKTIMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 311 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 312 IFIDEIDSIA 321 >gi|109018127|ref|XP_001096523.1| PREDICTED: nuclear VCP-like isoform 3 [Macaca mulatta] Length = 750 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 512 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 543 >gi|84998232|ref|XP_953837.1| transitional endoplasmic reticulum ATPase (CDC48 ) [Theileria annulata] gi|65304834|emb|CAI73159.1| transitional endoplasmic reticulum ATPase (CDC48 homologue), putative [Theileria annulata] Length = 822 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 538 VLFYGPPGCGKTLLAKAVASECSANFISVKGP 569 >gi|303228652|ref|ZP_07315477.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-134-V-Col7a] gi|302516632|gb|EFL58549.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-134-V-Col7a] Length = 804 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 119/292 (40%), Gaps = 39/292 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+T + GQ + L I R + + H LF GP G GKT++A++ AR + Sbjct: 11 RPQTFTDVVGQHQVSDTLMRAI-----REDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE-----IHRLSIIVEEILYPAMED----F 132 T P + + + + DVL ID I + + E + + +E F Sbjct: 66 HGPTDHP--CNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVF 123 Query: 133 QLD---LMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-- 185 +D ++ E +A ++++ I ATT + L + R R F I Sbjct: 124 IIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQ---RYTFRRITS 180 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 +D+ +Q A G A+ D AA IA+ + G R A +L + A + EI Sbjct: 181 DDIAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMA--------SGEI 232 Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297 A + L +G D + A + G GP ++ I LSE RD + Sbjct: 233 TPAVVEEL----IGLVSKDWIIKFLSALHNGDGPAVLKYIQNALSEGRDGAQ 280 >gi|291541725|emb|CBL14835.1| Recombination protein MgsA [Ruminococcus bromii L2-63] Length = 421 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 16/146 (10%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+T+++ GQ + L+ IE+ + +++F GP G+GKTTLA +A++ Sbjct: 9 IRPKTIDDIVGQKHLIAPDRPLRKIIESGD-----IPNLIFYGPSGVGKTTLATYIAKKT 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133 + +G A D+ ++ L +L++DEI + ++ L +E+ Sbjct: 64 NRTLKKLNG-TTASTADIKEIVAQLNTFSGLNGILLYLDEIQYFNKKQQQTLLEYIENGS 122 Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E P LSR T+ Sbjct: 123 ITLIASTTENPYFYVYNAILSRSTVF 148 >gi|156717934|ref|NP_001096509.1| nuclear VCP-like [Xenopus (Silurana) tropicalis] gi|138519795|gb|AAI35412.1| LOC100125138 protein [Xenopus (Silurana) tropicalis] Length = 852 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 614 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 645 >gi|16272655|ref|NP_438873.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus influenzae Rd KW20] gi|68249291|ref|YP_248403.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus influenzae 86-028NP] gi|145635953|ref|ZP_01791638.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittAA] gi|260581527|ref|ZP_05849335.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus influenzae RdAW] gi|319897850|ref|YP_004136047.1| ATP-dependent clp protease ATP-binding subunit clpx [Haemophilus influenzae F3031] gi|329122526|ref|ZP_08251110.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus aegyptius ATCC 11116] gi|1168980|sp|P44838|CLPX_HAEIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|1573717|gb|AAC22372.1| ATP-dependent Clp protease, ATP-binding subunit (clpX) [Haemophilus influenzae Rd KW20] gi|68057490|gb|AAX87743.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus influenzae 86-028NP] gi|145266786|gb|EDK06805.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittAA] gi|260091825|gb|EEW75780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus influenzae RdAW] gi|317433356|emb|CBY81735.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus influenzae F3031] gi|327473155|gb|EGF18578.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus aegyptius ATCC 11116] Length = 411 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N E Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 172 EKAEKGIIYIDEIDKIS 188 >gi|68484222|ref|XP_714003.1| hypothetical protein CaO19.9876 [Candida albicans SC5314] gi|68484337|ref|XP_713945.1| hypothetical protein CaO19.2340 [Candida albicans SC5314] gi|46435465|gb|EAK94846.1| hypothetical protein CaO19.2340 [Candida albicans SC5314] gi|46435525|gb|EAK94905.1| hypothetical protein CaO19.9876 [Candida albicans SC5314] gi|238878518|gb|EEQ42156.1| cell division control protein 48 [Candida albicans WO-1] Length = 826 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VLF GPPG GKT LA+ VA E+ NF S GP + G+ + + ++ D+ V Sbjct: 525 VLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 584 Query: 109 LFIDEIHRLS 118 +F+DE+ ++ Sbjct: 585 VFLDELDSIA 594 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L + Sbjct: 252 ILMYGPPGTGKTIMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 311 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 312 IFIDEIDSIA 321 >gi|307596341|ref|YP_003902658.1| AAA ATPase central domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307551542|gb|ADN51607.1| AAA ATPase central domain protein [Vulcanisaeta distributa DSM 14429] Length = 435 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RPR L E Q EA L +I + + V+ VGPPG GKTTLA +A E Sbjct: 8 VEKYRPRRLSEVVNQEEAKKALLDWINDWEKGKPSKKAVMLVGPPGTGKTTLAYALANER 67 Query: 79 G 79 G Sbjct: 68 G 68 >gi|301169433|emb|CBW29033.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Haemophilus influenzae 10810] Length = 411 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N E Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 172 EKAEKGIIYIDEIDKIS 188 >gi|254580125|ref|XP_002496048.1| ZYRO0C09262p [Zygosaccharomyces rouxii] gi|238938939|emb|CAR27115.1| ZYRO0C09262p [Zygosaccharomyces rouxii] Length = 830 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ NF S GP Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 555 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ + L E+ + + Sbjct: 251 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 311 IFIDEIDSIA 320 >gi|256073901|ref|XP_002573266.1| cell division control protein 48 aaa family protein [Schistosoma mansoni] gi|238658442|emb|CAZ29498.1| cell division control protein 48 aaa family protein (transitional endoplasmic reticulum atpase), putative [Schistosoma mansoni] Length = 596 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCV 570 Query: 109 LFIDEIHRLSII 120 LF DE+ ++ + Sbjct: 571 LFFDELDSIAKV 582 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 297 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 298 IFIDEL 303 >gi|229845548|ref|ZP_04465676.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 6P18H1] gi|229811564|gb|EEP47265.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 6P18H1] Length = 411 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N E Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 172 EKAEKGIIYIDEIDKIS 188 >gi|241949865|ref|XP_002417655.1| CDC48 ATPase, putative [Candida dubliniensis CD36] gi|223640993|emb|CAX45351.1| CDC48 ATPase, putative [Candida dubliniensis CD36] Length = 826 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ NF S GP Sbjct: 525 VLFFGPPGTGKTLLAKAVATEVSANFISVKGP 556 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L + Sbjct: 252 ILMYGPPGTGKTIMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 311 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 312 IFIDEIDSIA 321 >gi|210633172|ref|ZP_03297708.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279] gi|210159212|gb|EEA90183.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279] Length = 635 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 17/105 (16%) Query: 26 TLEEFTGQVEACSNLKV---FIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77 T ++ GQ EA +LK F+E K R E + L VGPPG GKT LA+ VA E Sbjct: 183 TFKDVAGQEEAKESLKEVVDFLEKPK-RYEEIGAKLPRGALLVGPPGTGKTLLAKAVAGE 241 Query: 78 LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 GV F S SG + A + L +++ ++FIDEI Sbjct: 242 AGVPFFSISGSEFVEMFVGRGAAKVRDLFKQAKEKAPCIVFIDEI 286 >gi|145633844|ref|ZP_01789566.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 3655] gi|145637966|ref|ZP_01793605.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittHH] gi|148827883|ref|YP_001292636.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus influenzae PittGG] gi|144985286|gb|EDJ92125.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 3655] gi|145268832|gb|EDK08796.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittHH] gi|148719125|gb|ABR00253.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittGG] Length = 411 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N E Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 172 EKAEKGIIYIDEIDKIS 188 >gi|145540886|ref|XP_001456132.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124423942|emb|CAK88735.1| unnamed protein product [Paramecium tetraurelia] Length = 818 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ + + + D+ V Sbjct: 527 VLFYGPPGCGKTLLAKAVASECSANFISIKGPELLTMWFGESESNVREVFDKARQASPCV 586 Query: 109 LFIDEIHRLSI 119 LF DE+ +++ Sbjct: 587 LFFDELDSIAV 597 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108 VL GPPG GKT +A+ VA E G F +GP I G+L E + Sbjct: 254 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGEAEGNLRKAFEEAEKNSPAI 313 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ E++ Sbjct: 314 IFIDEIDSIAPKREKV 329 >gi|50310633|ref|XP_455337.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644473|emb|CAG98045.1| KLLA0F05676p [Kluyveromyces lactis] Length = 830 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VLF GPPG GKT LA+ VA E+ NF S GP + G+ + + ++ D+ V Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 583 Query: 109 LFIDEIHRLS 118 +F+DE+ ++ Sbjct: 584 VFLDELDSIA 593 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP V++K AG+ + L E+ + + Sbjct: 251 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 311 IFIDEIDSIA 320 >gi|229847177|ref|ZP_04467281.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 7P49H1] gi|229809853|gb|EEP45575.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 7P49H1] gi|309973788|gb|ADO96989.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus influenzae R2846] Length = 411 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N E Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 172 EKAEKGIIYIDEIDKIS 188 >gi|316968483|gb|EFV52755.1| putative ATPase, AAA family [Trichinella spiralis] Length = 869 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 574 VLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 633 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 634 LFFDELDSIA 643 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L + + Sbjct: 298 ILLYGPPGCGKTLIARAVANETGAFFFLLNGPEIMSKLAGESESNLRKAFEECEKNAPSI 357 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 358 LFIDEIDAIT 367 >gi|291402323|ref|XP_002717424.1| PREDICTED: nuclear VCP-like [Oryctolagus cuniculus] Length = 869 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 613 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 644 >gi|168048981|ref|XP_001776943.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671644|gb|EDQ58192.1| predicted protein [Physcomitrella patens subsp. patens] Length = 821 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 527 VLFYGPPGCGKTMLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCV 586 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 587 LFFDELDSIA 596 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 254 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 313 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 314 IFIDEIDSIA 323 >gi|163791060|ref|ZP_02185481.1| cell division protein FtsH [Carnobacterium sp. AT7] gi|159873705|gb|EDP67788.1| cell division protein FtsH [Carnobacterium sp. AT7] Length = 718 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 97/223 (43%), Gaps = 39/223 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 226 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFENAKKAAPAI 285 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LI 157 +FIDEI + Q +G G R +N + F+ +I Sbjct: 286 IFIDEIDAVG-------------RQRGAGMGGGHDEREQTLNQLLVEMDGFSGNEGVIVI 332 Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 AAT R +L L RF I + +++ + I++ AK LA A ++A+ + Sbjct: 333 AATNRSDVLDPALLRPGRFDRQILVGHPDVKGREAILKVHAKNKPLA----ADVDLAVVA 388 Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258 R TP +G L V + A + A+ +EI DA L A D++ Sbjct: 389 RQTPGFSGADLENVLNEAALVAARRNKKEI-DALDLDEAQDRV 430 >gi|154282971|ref|XP_001542281.1| cell division cycle protein 48 [Ajellomyces capsulatus NAm1] gi|150410461|gb|EDN05849.1| cell division cycle protein 48 [Ajellomyces capsulatus NAm1] Length = 806 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 517 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 548 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 + GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 243 IFMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 302 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 303 IFIDEIDSIA 312 >gi|148826641|ref|YP_001291394.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus influenzae PittEE] gi|148716801|gb|ABQ99011.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittEE] Length = 411 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N E Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 172 EKAEKGIIYIDEIDKIS 188 >gi|146415458|ref|XP_001483699.1| cell division control protein 48 [Meyerozyma guilliermondii ATCC 6260] Length = 825 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VLF GPPG GKT LA+ VA E+ NF S GP + G+ + + ++ D+ V Sbjct: 523 VLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 582 Query: 109 LFIDEIHRLS 118 +F+DE+ ++ Sbjct: 583 VFLDELDSIA 592 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 250 ILMYGPPGTGKTVMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSI 309 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 310 IFIDEIDSIA 319 >gi|71033633|ref|XP_766458.1| cell division cycle protein 48 [Theileria parva strain Muguga] gi|68353415|gb|EAN34175.1| cell division cycle protein 48, putative [Theileria parva] Length = 811 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 529 VLFYGPPGCGKTLLAKAVASECSANFISVKGP 560 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ + L + Sbjct: 256 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFAEAEKNAPSI 315 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 316 IFIDEIDSIA 325 >gi|260583374|ref|ZP_05851145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus influenzae NT127] gi|260093579|gb|EEW77496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus influenzae NT127] Length = 411 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N E Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 172 EKAEKGIIYIDEIDKIS 188 >gi|225320703|dbj|BAH29747.1| valosin-containing protein [Dicyema japonicum] gi|298916886|dbj|BAJ09740.1| valosin-containing protein [Dicyema japonicum] Length = 424 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ + Sbjct: 155 VLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANIRDIFDKARQASPCI 214 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 215 LFFDELDSIA 224 >gi|221109190|ref|XP_002169357.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 518 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 228 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARMAAPCV 287 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 288 LFFDELDSIA 297 >gi|160893843|ref|ZP_02074626.1| hypothetical protein CLOL250_01397 [Clostridium sp. L2-50] gi|156864495|gb|EDO57926.1| hypothetical protein CLOL250_01397 [Clostridium sp. L2-50] Length = 430 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 28/128 (21%) Query: 19 ISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPPG 64 I+LL+P+ + EF GQ EA L V + R A ++L VGP G Sbjct: 59 INLLKPKEIREFLDQYVIGQEEAKKVLSVAVYNHYKRIMADKDFDVELQKSNILMVGPTG 118 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------LF 110 GKT LAQ +A+ L V F + +AG D+ +L L D DV ++ Sbjct: 119 SGKTYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVERAEHGIIY 178 Query: 111 IDEIHRLS 118 IDEI +++ Sbjct: 179 IDEIDKIT 186 >gi|146296233|ref|YP_001180004.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409809|gb|ABP66813.1| membrane protease FtsH catalytic subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 615 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE ++ N + +IE A +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 177 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 233 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L D+ V+FIDEI Sbjct: 234 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 268 >gi|145639475|ref|ZP_01795080.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittII] gi|319775444|ref|YP_004137932.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus influenzae F3047] gi|145271522|gb|EDK11434.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittII] gi|317450035|emb|CBY86249.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus influenzae F3047] Length = 411 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N E Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 172 EKAEKGIIYIDEIDKIS 188 >gi|145642382|ref|ZP_01797942.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae R3021] gi|145272925|gb|EDK12811.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 22.4-21] Length = 411 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N E Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 172 EKAEKGIIYIDEIDKIS 188 >gi|159041476|ref|YP_001540728.1| TIP49-like protein [Caldivirga maquilingensis IC-167] gi|157920311|gb|ABW01738.1| TIP49-like protein [Caldivirga maquilingensis IC-167] Length = 456 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 31/52 (59%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 F GQVEA + ++ KA + VL VGPPG GKT LA +ARELG + Sbjct: 42 FVGQVEAREAAAMVVKIIKAGKFSGKGVLIVGPPGTGKTALAIGIARELGAD 93 >gi|39937144|ref|NP_949420.1| AAA ATPase [Rhodopseudomonas palustris CGA009] gi|39651002|emb|CAE29525.1| AAA ATPase [Rhodopseudomonas palustris CGA009] Length = 663 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 8/82 (9%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------ 103 EA VL GPPG GKT +A+ VARE GV F +GP I + G+ +L + Sbjct: 157 EAPKGVLLYGPPGCGKTLIARTVAREAGVYFLHVNGPEIIQKHYGESEEMLRRIFADAQK 216 Query: 104 EDRDVLFIDEIHRLSIIVEEIL 125 + ++F DEI ++ E +L Sbjct: 217 QPAAIIFFDEIDAIAPNRETVL 238 >gi|325117532|emb|CBZ53084.1| putative peroxisomal-type ATPase [Neospora caninum Liverpool] Length = 556 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E GVNF S GP Sbjct: 304 ILLFGPPGTGKTLLAKAVATECGVNFISVKGP 335 >gi|302497219|ref|XP_003010610.1| hypothetical protein ARB_03311 [Arthroderma benhamiae CBS 112371] gi|291174153|gb|EFE29970.1| hypothetical protein ARB_03311 [Arthroderma benhamiae CBS 112371] Length = 908 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 624 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 655 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 350 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 409 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 410 IFIDEIDSIA 419 >gi|302424037|ref|XP_003009845.1| cell division cycle protein [Verticillium albo-atrum VaMs.102] gi|261361679|gb|EEY24107.1| cell division cycle protein [Verticillium albo-atrum VaMs.102] Length = 634 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 497 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 528 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 256 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 316 IFIDEIDSIA 325 >gi|310750391|ref|NP_001073044.2| nuclear valosin-containing protein-like [Gallus gallus] Length = 844 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 606 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 637 >gi|151553618|gb|AAI48920.1| NVL protein [Bos taurus] Length = 773 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 535 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 566 >gi|6179734|gb|AAF05624.1| cell survival CED-4-interacting protein MAC-1 [Caenorhabditis elegans] Length = 813 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 571 ILLCGPPGCGKTLLAKAVANETGMNFFSVKGP 602 >gi|327300188|ref|XP_003234787.1| cell division control protein Cdc48 [Trichophyton rubrum CBS 118892] gi|326463681|gb|EGD89134.1| cell division control protein Cdc48 [Trichophyton rubrum CBS 118892] Length = 814 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 530 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 561 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 256 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 316 IFIDEIDSIA 325 >gi|325118113|emb|CBZ53664.1| hypothetical protein NCLIV_034460 [Neospora caninum Liverpool] Length = 592 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 302 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 333 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ + L E+ + + Sbjct: 29 VLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFEEAEKNAPAI 88 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 89 IFIDEIDSIA 98 >gi|296423208|ref|XP_002841147.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637381|emb|CAZ85338.1| unnamed protein product [Tuber melanosporum] Length = 818 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 529 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 560 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 255 ILLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 314 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 315 IFIDEIDSIA 324 >gi|254574502|ref|XP_002494360.1| ATPase in ER, nuclear membrane and cytosol with homology to mammalian p97 [Pichia pastoris GS115] gi|238034159|emb|CAY72181.1| ATPase in ER, nuclear membrane and cytosol with homology to mammalian p97 [Pichia pastoris GS115] gi|328353810|emb|CCA40207.1| transitional endoplasmic reticulum ATPase [Pichia pastoris CBS 7435] Length = 830 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VLF GPPG GKT LA+ VA E+ NF S GP + G+ + + ++ D+ V Sbjct: 524 VLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMYFGESESNIRDIFDKARAAAPTV 583 Query: 109 LFIDEIHRLS 118 +F+DE+ ++ Sbjct: 584 VFLDELDSIA 593 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAA-LLTNLEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L + E+ + + Sbjct: 251 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRSAFEEAEKNAPSI 310 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 311 IFIDEIDSIA 320 >gi|221102685|ref|XP_002168499.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 769 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 479 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARMAAPCV 538 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 539 LFFDELDSIA 548 >gi|126466018|ref|YP_001041127.1| AAA family ATPase, CDC48 subfamily protein [Staphylothermus marinus F1] gi|126014841|gb|ABN70219.1| AAA family ATPase, CDC48 subfamily [Staphylothermus marinus F1] Length = 733 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 17/133 (12%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLF 59 S V +E + + + P+ E G +E A ++ +E E H +L Sbjct: 168 SEPVKEEVIERARMIPKVTWEDIGDLEEAKQKIREIVELPLKHPELFKHLGIEPPKGILL 227 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL---EDRD---VLFI 111 GPPG GKT LA+ +A E+G F + +GP I G+ L + +R+ ++FI Sbjct: 228 YGPPGTGKTLLAKALANEIGAYFTAINGPEIMSKFYGESEQRLREIFEEAERNAPAIIFI 287 Query: 112 DEIHRLSIIVEEI 124 DEI ++ EE+ Sbjct: 288 DEIDSIAPKREEV 300 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 499 ILLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 532 >gi|196010085|ref|XP_002114907.1| conserved hypothetical protein [Trichoplax adhaerens] gi|190582290|gb|EDV22363.1| conserved hypothetical protein [Trichoplax adhaerens] Length = 872 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 531 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 590 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 591 LFFDELDSIA 600 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 243 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 276 >gi|154309232|ref|XP_001553950.1| hypothetical protein BC1G_07510 [Botryotinia fuckeliana B05.10] gi|150852334|gb|EDN27526.1| hypothetical protein BC1G_07510 [Botryotinia fuckeliana B05.10] Length = 823 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFYGPPGTGKTLLAKAVANECSANFISVKGP 564 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 VLMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|517390|emb|CAA56097.1| cdcH [Halobacterium salinarum] Length = 742 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T ++ G EA +N+K +E + E VL GPPG GKT +A+ VA E Sbjct: 460 TWDDVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANE 519 Query: 78 LGVNFRSTSGP 88 NF S GP Sbjct: 520 TNANFISVRGP 530 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K L + + +D + Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSI 285 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 286 IFIDELDSIAPKREDV 301 >gi|68068217|ref|XP_676018.1| cell division cycle ATPase [Plasmodium berghei strain ANKA] gi|56495516|emb|CAH99651.1| cell division cycle ATPase, putative [Plasmodium berghei] Length = 932 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E NF S GP + G+ A + +L D+ + Sbjct: 673 ILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAASPCI 732 Query: 109 LFIDEIHRLS 118 +F DEI L+ Sbjct: 733 IFFDEIDSLA 742 >gi|50291367|ref|XP_448116.1| hypothetical protein [Candida glabrata CBS 138] gi|49527427|emb|CAG61067.1| unnamed protein product [Candida glabrata] Length = 830 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VLF GPPG GKT LA+ VA E+ NF S GP + G+ + + ++ D+ V Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 583 Query: 109 LFIDEIHRLS 118 +F+DE+ ++ Sbjct: 584 VFLDELDSIA 593 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ + L E+ + + Sbjct: 251 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 311 IFIDEIDSIA 320 >gi|18310769|ref|NP_562703.1| recombination factor protein RarA [Clostridium perfringens str. 13] gi|18145450|dbj|BAB81493.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 408 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 14/144 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+ LE+ GQ V + L I + + + + +F GPPG+GKTTLA +++ Sbjct: 1 MRPKKLEDIVGQKHIVGEGTPLNKLI-----KNKNIINCIFYGPPGVGKTTLANIISNYT 55 Query: 79 GVNFRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQL 134 F + I + + + + NL + +L+IDE+ + ++ L +ED ++ Sbjct: 56 DKKFYKINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGRV 115 Query: 135 DLMVG--EGPSARSVKINLSRFTL 156 L+ E P K LSR T+ Sbjct: 116 ILIASTTENPYFAIHKAILSRSTI 139 >gi|302662987|ref|XP_003023142.1| hypothetical protein TRV_02721 [Trichophyton verrucosum HKI 0517] gi|291187123|gb|EFE42524.1| hypothetical protein TRV_02721 [Trichophyton verrucosum HKI 0517] Length = 903 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 619 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 650 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 345 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 404 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 405 IFIDEIDSIA 414 >gi|256073903|ref|XP_002573267.1| cell division control protein 48 aaa family protein [Schistosoma mansoni] gi|238658443|emb|CAZ29499.1| cell division control protein 48 aaa family protein (transitional endoplasmic reticulum atpase), putative [Schistosoma mansoni] Length = 649 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 357 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCV 416 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 417 LFFDELDSIA 426 Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 84 ILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 143 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 144 IFIDEL 149 >gi|157787079|ref|NP_001099450.1| nuclear valosin-containing protein-like [Rattus norvegicus] gi|149040892|gb|EDL94849.1| nuclear VCP-like (predicted) [Rattus norvegicus] Length = 855 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 617 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 648 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDV------ 108 VL GPPG GKT LA +A EL + + P I +G+ L +L D+ V Sbjct: 300 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRDLFDQAVSNAPCI 359 Query: 109 LFIDEI 114 +FIDEI Sbjct: 360 VFIDEI 365 >gi|170720266|ref|YP_001747954.1| ATP-dependent protease La [Pseudomonas putida W619] gi|169758269|gb|ACA71585.1| ATP-dependent protease La [Pseudomonas putida W619] Length = 808 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 88/215 (40%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 390 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 449 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 450 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 498 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 499 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 557 Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230 T LA++D A E R G ++ +L + VR Sbjct: 558 TSLAISDSALRAVIEGYAREAGVRQLEKQLGKLVR 592 >gi|148228613|ref|NP_001079582.1| nuclear VCP-like [Xenopus laevis] gi|28278757|gb|AAH44980.1| MGC52979 protein [Xenopus laevis] Length = 854 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 616 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 647 >gi|332981202|ref|YP_004462643.1| membrane protease FtsH catalytic subunit [Mahella australiensis 50-1 BON] gi|332698880|gb|AEE95821.1| membrane protease FtsH catalytic subunit [Mahella australiensis 50-1 BON] Length = 602 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T + G E LK +E K+ + L+ VL +GPPG GKT LA+ VA E Sbjct: 158 TFNDVAGADEEKQELKEVVEFLKSPRKFLELGARIPKGVLLIGPPGTGKTLLAKAVAGEA 217 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G AA + +L D+ ++FIDEI Sbjct: 218 GVPFFSISGSDFVEMFVGVGAARVRDLFDQAKKNSPCIVFIDEI 261 >gi|326473474|gb|EGD97483.1| cell division control protein Cdc48 [Trichophyton tonsurans CBS 112818] gi|326480303|gb|EGE04313.1| cell division cycle protein 48 [Trichophyton equinum CBS 127.97] Length = 814 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 530 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 561 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 256 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 316 IFIDEIDSIA 325 >gi|315042203|ref|XP_003170478.1| hypothetical protein MGYG_07723 [Arthroderma gypseum CBS 118893] gi|311345512|gb|EFR04715.1| hypothetical protein MGYG_07723 [Arthroderma gypseum CBS 118893] Length = 814 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 530 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 561 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 256 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 316 IFIDEIDSIA 325 >gi|258648498|ref|ZP_05735967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella tannerae ATCC 51259] gi|260851263|gb|EEX71132.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella tannerae ATCC 51259] Length = 415 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 33/141 (23%) Query: 11 NVSQEDADISLL-RPRTLEEF-----TGQVEACSNLKV-----FIEAAKARAEALD---- 55 N+S+ED D+ + RP+ ++ + GQ +A L V + A+ +A+D Sbjct: 54 NISKEDIDLKRIPRPQEIKSYLDQYVIGQEDAKRYLSVSVYNHYKRLAQENLDAVDDGVE 113 Query: 56 ----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT------ 101 +++ VG G GKT LA+ +AR L V F V +AG D+ ++L+ Sbjct: 114 IEKSNIIMVGTTGTGKTLLARTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQEA 173 Query: 102 --NLE--DRDVLFIDEIHRLS 118 N+E +R ++FIDEI +++ Sbjct: 174 DFNVERAERGIVFIDEIDKIA 194 >gi|256073899|ref|XP_002573265.1| cell division control protein 48 aaa family protein [Schistosoma mansoni] gi|238658441|emb|CAZ29497.1| cell division control protein 48 aaa family protein (transitional endoplasmic reticulum atpase), putative [Schistosoma mansoni] Length = 803 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 297 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 298 IFIDEL 303 >gi|38455496|gb|AAR20845.1| cell division cycle protein 48 [Pseudochlorella sp. CCAP 211/1A] Length = 614 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 320 VLFYGPPGCGKTPLAKAIANECQANFISVKGPELLTMWFGESEANVREILDKARQSAPCV 379 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 380 LFFDELDSIA 389 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 47 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 106 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 107 IFIDEIDSIA 116 >gi|85000801|ref|XP_955119.1| replication factor [Theileria annulata strain Ankara] gi|65303265|emb|CAI75643.1| replication factor, putative [Theileria annulata] Length = 299 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D I RP TLEE G E L+ FI A+ + ++L GPPG GKTT +A Sbjct: 6 DIWIEKYRPSTLEEIIGNPEITKRLQ-FI----AKEGNMPNLLLCGPPGTGKTTSVLCLA 60 Query: 76 RE-LGVNFRS 84 RE LG +F+S Sbjct: 61 REMLGSHFKS 70 >gi|167036728|ref|YP_001664306.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039447|ref|YP_001662432.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514] gi|256751850|ref|ZP_05492722.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus CCSD1] gi|300915473|ref|ZP_07132786.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561] gi|307725228|ref|YP_003904979.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513] gi|320115150|ref|YP_004185309.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|310943091|sp|B0K5A3|FTSH1_THEPX RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|166853687|gb|ABY92096.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514] gi|166855562|gb|ABY93970.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749257|gb|EEU62289.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus CCSD1] gi|300888533|gb|EFK83682.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561] gi|307582289|gb|ADN55688.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513] gi|319928241|gb|ADV78926.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 611 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 47/95 (49%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE K F+E A VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 171 EELQEIVEFLKYPKKFLELG---ARIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L D+ ++FIDEI Sbjct: 228 SDFVEMFVGVGAARVRDLFDQAKKNAPCIVFIDEI 262 >gi|330954583|gb|EGH54843.1| recombination factor protein RarA [Pseudomonas syringae Cit 7] Length = 92 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + A L ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQGA--LHSMIFWGPPGVGKTTLAKLLAKVSDAH 74 Query: 82 FRSTS 86 F + S Sbjct: 75 FETVS 79 >gi|326915142|ref|XP_003203879.1| PREDICTED: nuclear valosin-containing protein-like [Meleagris gallopavo] Length = 874 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 636 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 667 >gi|313237262|emb|CBY19901.1| unnamed protein product [Oikopleura dioica] Length = 690 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G+NF S GP Sbjct: 464 VLLTGPPGCGKTLLAKAIANESGLNFISVKGP 495 >gi|299744108|ref|XP_001840883.2| AAA family ATPase [Coprinopsis cinerea okayama7#130] gi|298405968|gb|EAU80936.2| AAA family ATPase [Coprinopsis cinerea okayama7#130] Length = 789 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 21/104 (20%) Query: 5 EGLLSRNVSQEDADISLLRPRTL------------EEFTGQVEACSNLKVFIEAAKARAE 52 EGL+ +++ DA + ++RP + E GQ E L+ +E E Sbjct: 488 EGLI-LDIADLDAALPMVRPSAMRSLFVDTPAVRYSEIGGQAEVIQKLREAVEWPLLHPE 546 Query: 53 ALDH--------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 A VL GPPG KT LA+ A E GVNF + GP Sbjct: 547 AFQRLGVKPPKGVLLYGPPGCSKTVLARACACESGVNFVAVKGP 590 >gi|288803735|ref|ZP_06409164.1| cell division protein FtsH [Prevotella melaninogenica D18] gi|288333824|gb|EFC72270.1| cell division protein FtsH [Prevotella melaninogenica D18] Length = 676 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 108/264 (40%), Gaps = 51/264 (19%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ A ++ +E K + D L VGPPG GKT LA+ VA E Sbjct: 190 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 249 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130 GV F S SG V A + + +++ ++FIDEI + + PAM Sbjct: 250 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKSPCIIFIDEIDAVGRARSK--NPAM- 306 Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177 G R +N S ++AAT RV +L L RF Sbjct: 307 ---------GGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQ 357 Query: 178 IRLNFYEIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 I ++ ++ + K I R KL E +I + +R TP +G + V + A Sbjct: 358 IHVDLPDLPERKEIFLVHMRNLKL-------EKNLDIDLLARQTPGFSGADIANVCNEAA 410 Query: 235 VAHAKTITREIADAALLRLAIDKM 258 + A+ ++E+ L A+D++ Sbjct: 411 LIAARHNSKEVTKQDFLD-AVDRI 433 >gi|237833247|ref|XP_002365921.1| cell division protein 48, putative [Toxoplasma gondii ME49] gi|211963585|gb|EEA98780.1| cell division protein 48, putative [Toxoplasma gondii ME49] gi|221488381|gb|EEE26595.1| cell division protein, putative [Toxoplasma gondii GT1] gi|221508884|gb|EEE34453.1| cell division protein, putative [Toxoplasma gondii VEG] Length = 811 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 520 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 551 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ + L E+ + + Sbjct: 247 VLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFEEAEKNAPAI 306 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 307 IFIDEIDSIA 316 >gi|220917331|ref|YP_002492635.1| ATP-dependent protease La [Anaeromyxobacter dehalogenans 2CP-1] gi|219955185|gb|ACL65569.1| ATP-dependent protease La [Anaeromyxobacter dehalogenans 2CP-1] Length = 835 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 93/233 (39%), Gaps = 55/233 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L Q +AR G F R + G V +A G + L R Sbjct: 376 LCFVGPPGVGKTSLGQSIARATGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRIIQSMK 435 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 V+ +DEI +L S + E+L P A D LDL Sbjct: 436 KAGTVNPVMMLDEIDKLGADFRGDPSAALLEVLDPEQNHAFSDHYLDL-----------S 484 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ----------RGAKL 198 +LS+ I + + PL+DR I + L Y E+ I Q G Sbjct: 485 YDLSKVMFIGTANLLDPIPGPLKDRMEI-LELPGYTFEEKVHIAQNHLIPKQLREHGLSA 543 Query: 199 TGLAVTDEAACEIAMRSRGTPRIAG--RLLRRVRDFAEVAHAKTITREIADAA 249 +A+T++A +I M R AG L RR+ D + + +I AA Sbjct: 544 DAIAITEKALIKIIM---AYTREAGVRNLERRIADVCRAIAVEVASGKIGAAA 593 >gi|156058356|ref|XP_001595101.1| hypothetical protein SS1G_03189 [Sclerotinia sclerotiorum 1980] gi|154700977|gb|EDO00716.1| hypothetical protein SS1G_03189 [Sclerotinia sclerotiorum 1980 UF-70] Length = 823 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFYGPPGTGKTLLAKAVANECSANFISVKGP 564 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 VLMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|126341344|ref|XP_001368801.1| PREDICTED: similar to peroxisome biogenesis disorder protein 1 isoform 2 [Monodelphis domestica] Length = 1250 Score = 44.7 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT +A V+ARE G+NF S GP Sbjct: 844 ILLYGPPGTGKTLIAGVIARESGMNFISIKGP 875 >gi|50555822|ref|XP_505319.1| YALI0F12155p [Yarrowia lipolytica] gi|49651189|emb|CAG78126.1| YALI0F12155p [Yarrowia lipolytica] Length = 814 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ NF S GP Sbjct: 527 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 558 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 254 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 313 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 314 IFIDEIDSIA 323 >gi|268532274|ref|XP_002631265.1| Hypothetical protein CBG03070 [Caenorhabditis briggsae] Length = 807 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 578 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 579 LFFDELDSIA 588 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 15/127 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108 +L GPPG GKT +A+ VA E G F +GP V++K +L E + Sbjct: 247 ILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAI 306 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 LFIDEI ++ E+ L + +G R S +IAAT R + Sbjct: 307 LFIDEIDAIAPKREKTNGEVERIVSQLLTLMDGVKGR------SNLVVIAATNRPNSIDG 360 Query: 169 PLQDRFG 175 L+ RFG Sbjct: 361 ALR-RFG 366 >gi|15790615|ref|NP_280439.1| cell division cycle protein [Halobacterium sp. NRC-1] gi|169236353|ref|YP_001689553.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] gi|12229754|sp|Q9HPF0|CDCH_HALSA RecName: Full=Protein CdcH gi|10581137|gb|AAG19919.1| cell division cycle protein [Halobacterium sp. NRC-1] gi|167727419|emb|CAP14207.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] Length = 742 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T ++ G EA +N+K +E + E VL GPPG GKT +A+ VA E Sbjct: 460 TWDDVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANE 519 Query: 78 LGVNFRSTSGP 88 NF S GP Sbjct: 520 TNANFISVRGP 530 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K L + + +D + Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSI 285 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 286 IFIDELDSIAPKREDV 301 >gi|326501984|dbj|BAK06484.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 613 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 9/72 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107 VLF GPPG GKT+ A+V+A++ GV +I G + +L NL D Sbjct: 383 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANNLPDGG 442 Query: 108 VLFIDEIHRLSI 119 ++F+DE+ +I Sbjct: 443 IIFLDEVDSFAI 454 >gi|324513590|gb|ADY45579.1| Transitional endoplasmic reticulum ATPase 2 [Ascaris suum] Length = 474 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 183 VLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 242 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 243 LFFDELDSVA 252 >gi|242039557|ref|XP_002467173.1| hypothetical protein SORBIDRAFT_01g020910 [Sorghum bicolor] gi|241921027|gb|EER94171.1| hypothetical protein SORBIDRAFT_01g020910 [Sorghum bicolor] Length = 810 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 521 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 580 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 581 LFFDELDSIA 590 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 248 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 307 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 308 IFIDEIDSIA 317 >gi|194385100|dbj|BAG60956.1| unnamed protein product [Homo sapiens] Length = 589 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 512 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 543 >gi|119174931|ref|XP_001239786.1| hypothetical protein CIMG_09407 [Coccidioides immitis RS] gi|303314629|ref|XP_003067323.1| Cell division control protein 48, putative [Coccidioides posadasii C735 delta SOWgp] gi|240106991|gb|EER25178.1| Cell division control protein 48, putative [Coccidioides posadasii C735 delta SOWgp] gi|320037644|gb|EFW19581.1| cell division control protein Cdc48 [Coccidioides posadasii str. Silveira] Length = 815 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 533 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 564 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 259 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 319 IFIDEIDSIA 328 >gi|7509992|pir||T31590 hypothetical protein Y48C3A.h - Caenorhabditis elegans Length = 856 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 614 ILLCGPPGCGKTLLAKAVANETGMNFISVKGP 645 >gi|329770552|ref|ZP_08261930.1| ATP-dependent protease La [Gemella sanguinis M325] gi|328836301|gb|EGF85970.1| ATP-dependent protease La [Gemella sanguinis M325] Length = 765 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 38/189 (20%) Query: 43 FIEAAKARAEALDHVLFV-GPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA------- 93 F+ K R + +L + GPPG+GK++LA+ +A+ +G +F R + G V +A Sbjct: 330 FLAVKKLRDDMKSPILCLSGPPGVGKSSLAKSIAKSMGRSFVRISLGGVRDEAEIRGHRR 389 Query: 94 -------GDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137 G L L ++ ++ V+ +DEI +++ ++ E++ PA + +D Sbjct: 390 TYLGALPGKLIQSLKKVKTKNPVILLDEIDKMTSDIKGDPSSAMLEVIDPAQNNEFVDHY 449 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIV 192 + + +LS+ IA + L+ PL+DR + I L Y +++ +K ++ Sbjct: 450 L-------DIPFDLSKVLFIATANNLSLIPAPLRDRMEV-IELESYTVKEKENIAVKYLI 501 Query: 193 QRGAKLTGL 201 R K GL Sbjct: 502 PRQIKENGL 510 >gi|312792835|ref|YP_004025758.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179975|gb|ADQ40145.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor kristjanssonii 177R1B] Length = 616 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE ++ N + +IE A +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 178 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L D+ V+FIDEI Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 269 >gi|77927260|gb|ABB05505.1| PEX6 [Trypanosoma brucei] Length = 982 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ VA E+ +NF + GP Sbjct: 721 ILFYGPPGCGKTLLAKAVATEMNMNFMAVKGP 752 >gi|332796393|ref|YP_004457893.1| AAA ATPase [Acidianus hospitalis W1] gi|332694128|gb|AEE93595.1| AAA family ATPase, CDC48 subfamily [Acidianus hospitalis W1] Length = 750 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 +L GPPG+GKT LA+ +A E+G F S +GP I G+ L + D + Sbjct: 214 ILLYGPPGVGKTLLARALANEIGAYFISINGPEIMSKFYGESEERLRQIFDEANKNAPSI 273 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 274 IFIDEIDAIAPKREEV 289 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E G NF + GP V++K G+ + + R V Sbjct: 489 VLLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESEKAIREIFRRARQTAPTV 548 Query: 109 LFIDEIHRLS 118 +F DEI ++ Sbjct: 549 IFFDEIDSIA 558 >gi|323697670|ref|ZP_08109582.1| ATP-dependent protease La [Desulfovibrio sp. ND132] gi|323457602|gb|EGB13467.1| ATP-dependent protease La [Desulfovibrio desulfuricans ND132] Length = 820 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 93/228 (40%), Gaps = 67/228 (29%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT++A+ +AR + F R + G V +A G + L Sbjct: 367 LCFVGPPGVGKTSIARSIARSMDREFLRLSLGGVRDEAEIRGHRRTYVGAMPGKIIQSLK 426 Query: 102 NLE-DRDVLFIDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ + V+ +DE+ ++S E+L P A D LDL Sbjct: 427 RVKFNNPVICLDEVDKMSADFRGDPSAALLEVLDPEQNYAFNDHYLDL-----------D 475 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198 +LS+ I + + PLQDR I IRL Y E E + K I Q G K Sbjct: 476 YDLSKVFFITTANSLEGIPLPLQDRMEI-IRLPGYLETEKVEIAKGFLVPKQIKQHGLKP 534 Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 L ++D A ++ VR + + A + + REIA Sbjct: 535 ENLKISDNAILDV-----------------VRYYTKEAGVRNLEREIA 565 >gi|296816168|ref|XP_002848421.1| cell division cycle protein 48 [Arthroderma otae CBS 113480] gi|238841446|gb|EEQ31108.1| cell division cycle protein 48 [Arthroderma otae CBS 113480] Length = 814 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 530 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 561 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 256 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 316 IFIDEIDSIA 325 >gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a] Length = 353 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L+E T Q A + LK +++A L H+LF GPPG GKT+ + +EL Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82 >gi|156740991|ref|YP_001431120.1| ATP-dependent protease La [Roseiflexus castenholzii DSM 13941] gi|156232319|gb|ABU57102.1| ATP-dependent protease La [Roseiflexus castenholzii DSM 13941] Length = 786 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 47/218 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDRDVLFID 112 + FVGPPG+GKT+L + +AR LG F R++ G + +A G + L R + + Sbjct: 357 LCFVGPPGVGKTSLGRSIARALGRKFVRTSLGGIRDEAEIRGHRRTYIGALPGRIIQGMK 416 Query: 113 EIH-RLSIIVEEILYPAMEDFQ-------LDLMVGEGPSARS-----VKINLSRFTLIAA 159 R + V + + +DF+ L+++ E +A S + +LS+ IA Sbjct: 417 TAKSRYPVYVLDEIDKVGQDFRGDPTSALLEVLDPEQNNAFSDHYLEIPFDLSQVVFIAT 476 Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT------IVQRGAKLTGLA-----VTDEAA 208 ++ + NPL+DR I I + Y ED K +V++ + GLA +TD A Sbjct: 477 ANQLDTIPNPLRDRMEI-IEIGGY-TEDEKLGIAQGFLVRKQREFHGLAPDQLIITDAA- 533 Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +++ VR++ A + + REIA Sbjct: 534 ----------------IIKLVREYTREAGVRNLEREIA 555 >gi|312375083|gb|EFR22519.1| hypothetical protein AND_15087 [Anopheles darlingi] Length = 790 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 56/122 (45%), Gaps = 19/122 (15%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFV 60 L V + DI++ T E+ G EA LK +E K + + VL V Sbjct: 333 LGNQVEVDPEDITV----TFEDVKGCDEAKQELKEVVEFLKNPGKFSNLGGKLPKGVLLV 388 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFID 112 GPPG GKT LA+ VA E GV F +GP V A + L ++R V+FID Sbjct: 389 GPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFID 448 Query: 113 EI 114 EI Sbjct: 449 EI 450 >gi|308509910|ref|XP_003117138.1| CRE-CDC-48.1 protein [Caenorhabditis remanei] gi|308242052|gb|EFO86004.1| CRE-CDC-48.1 protein [Caenorhabditis remanei] Length = 809 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 579 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 580 LFFDELDSIA 589 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108 +L GPPG GKT +A+ VA E G F +GP V++K +L E + Sbjct: 247 ILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAI 306 Query: 109 LFIDEI 114 LFIDEI Sbjct: 307 LFIDEI 312 >gi|296417719|ref|XP_002838500.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634439|emb|CAZ82691.1| unnamed protein product [Tuber melanosporum] Length = 609 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 AD+ L+ E V N +VF A A VL GPPG GKT LA+ VA Sbjct: 327 ADVGALKSHKAELQMAIVLPIKNPEVF---ASVGLTAPSGVLLWGPPGCGKTLLAKAVAN 383 Query: 77 ELGVNFRSTSGP 88 E G NF S GP Sbjct: 384 ESGANFISIQGP 395 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK---AGDLAALLTNLED-RDV---- 108 VL GPPG GK LA ++RELG+ F + S P I G + ED R++ Sbjct: 86 VLLHGPPGCGKNMLANAISRELGLPFIAISAPSIVSRMYGGSEKMIREIFEDAREIAPCL 145 Query: 109 LFIDEI 114 +FIDEI Sbjct: 146 IFIDEI 151 >gi|222528657|ref|YP_002572539.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM 6725] gi|310943117|sp|B9MPK5|FTSH_ANATD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|222455504|gb|ACM59766.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM 6725] Length = 616 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE ++ N + +IE A +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 178 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L D+ V+FIDEI Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 269 >gi|164428754|ref|XP_957005.2| cell division cycle protein 48 [Neurospora crassa OR74A] gi|157072266|gb|EAA27769.2| cell division cycle protein 48 [Neurospora crassa OR74A] Length = 759 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 470 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 501 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 196 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 255 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 256 IFIDEIDSIA 265 >gi|151945136|gb|EDN63387.1| replication factor C subunit 2 [Saccharomyces cerevisiae YJM789] gi|256273083|gb|EEU08038.1| Rfc2p [Saccharomyces cerevisiae JAY291] gi|259147531|emb|CAY80782.1| Rfc2p [Saccharomyces cerevisiae EC1118] gi|323336956|gb|EGA78213.1| Rfc2p [Saccharomyces cerevisiae Vin13] gi|323347871|gb|EGA82132.1| Rfc2p [Saccharomyces cerevisiae Lalvin QA23] Length = 353 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L+E T Q A + LK +++A L H+LF GPPG GKT+ + +EL Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82 >gi|115816457|ref|XP_801708.2| PREDICTED: similar to Valosin containing protein isoform 2, partial [Strongylocentrotus purpuratus] gi|115970724|ref|XP_001186005.1| PREDICTED: similar to Valosin containing protein, partial [Strongylocentrotus purpuratus] Length = 537 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 243 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQAAPCV 302 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 303 LFFDELDSIA 312 >gi|72389534|ref|XP_845062.1| peroxisome assembly protein [Trypanosoma brucei TREU927] gi|62176745|gb|AAX70845.1| peroxisome assembly protein, putative [Trypanosoma brucei] gi|70801596|gb|AAZ11503.1| peroxisome assembly protein, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 982 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ VA E+ +NF + GP Sbjct: 721 ILFYGPPGCGKTLLAKAVATEMNMNFMAVKGP 752 >gi|323308474|gb|EGA61719.1| Rfc2p [Saccharomyces cerevisiae FostersO] Length = 353 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L+E T Q A + LK +++A L H+LF GPPG GKT+ + +EL Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82 >gi|302680046|ref|XP_003029705.1| hypothetical protein SCHCODRAFT_58751 [Schizophyllum commune H4-8] gi|300103395|gb|EFI94802.1| hypothetical protein SCHCODRAFT_58751 [Schizophyllum commune H4-8] Length = 724 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT LA +A ELGV F S S P I +G+ L + D + Sbjct: 129 VLLHGPPGCGKTLLAHAIAGELGVPFISISAPSIVSGMSGESEKTLRDTFDEAKRAAPCL 188 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 189 LFIDEIDAIT 198 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +F S GP Sbjct: 464 VLLWGPPGCGKTLLARAVANESCASFVSVKGP 495 >gi|289679161|ref|ZP_06500051.1| recombination factor protein RarA [Pseudomonas syringae pv. syringae FF5] Length = 110 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LR L+E+ GQ ++ K EA + AL ++F GPPG+GKTTLA+++A+ + Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLAKLLAKVSDAH 74 Query: 82 FRSTS 86 F + S Sbjct: 75 FETVS 79 >gi|224140199|ref|XP_002323472.1| predicted protein [Populus trichocarpa] gi|222868102|gb|EEF05233.1| predicted protein [Populus trichocarpa] Length = 802 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|197122546|ref|YP_002134497.1| ATP-dependent protease La [Anaeromyxobacter sp. K] gi|196172395|gb|ACG73368.1| ATP-dependent protease La [Anaeromyxobacter sp. K] Length = 835 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 93/233 (39%), Gaps = 55/233 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L Q +AR G F R + G V +A G + L R Sbjct: 376 LCFVGPPGVGKTSLGQSIARATGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRIIQSMK 435 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 V+ +DEI +L S + E+L P A D LDL Sbjct: 436 KAGTVNPVMMLDEIDKLGADFRGDPSAALLEVLDPEQNHAFSDHYLDL-----------S 484 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ----------RGAKL 198 +LS+ I + + PL+DR I + L Y E+ I Q G Sbjct: 485 YDLSKVMFIGTANLLDPIPGPLKDRMEI-LELPGYTFEEKVHIAQNHLIPKQLKEHGLSA 543 Query: 199 TGLAVTDEAACEIAMRSRGTPRIAG--RLLRRVRDFAEVAHAKTITREIADAA 249 +A+T++A +I M R AG L RR+ D + + +I AA Sbjct: 544 DAIAITEKALIKIIM---AYTREAGVRNLERRIADVCRAIAVEVASGKIGAAA 593 >gi|152205934|dbj|BAF73714.1| valosin containing protein [Haemaphysalis longicornis] Length = 808 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 516 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 575 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 576 LFFDELDSIA 585 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|90418162|ref|ZP_01226074.1| putative peptidase, M41 family [Aurantimonas manganoxydans SI85-9A1] gi|90337834|gb|EAS51485.1| putative peptidase, M41 family [Aurantimonas manganoxydans SI85-9A1] Length = 643 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Query: 23 RPRTLEEFTGQVEA-------CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 RPR +E+ G EA ++L + E + LFVGPPG GKT LAQ +A Sbjct: 217 RPR-IEDLHGYGEAGRWALQLVADLSAYREGTIGWEDVDAGALFVGPPGTGKTLLAQAIA 275 Query: 76 RELGVNFRSTS 86 GV+F +TS Sbjct: 276 NSAGVHFIATS 286 >gi|6322528|ref|NP_012602.1| Rfc2p [Saccharomyces cerevisiae S288c] gi|730502|sp|P40348|RFC2_YEAST RecName: Full=Replication factor C subunit 2; Short=Replication factor C2; AltName: Full=Activator 1 41 kDa subunit gi|498463|dbj|BAA05858.1| Rfc2 protein [Saccharomyces cerevisiae] gi|841464|gb|AAC49061.1| Rfc2p [Saccharomyces cerevisiae] gi|1015747|emb|CAA89596.1| RFC2 [Saccharomyces cerevisiae] gi|1019690|gb|AAB39294.1| ORF YJR068w [Saccharomyces cerevisiae] gi|285812957|tpg|DAA08855.1| TPA: Rfc2p [Saccharomyces cerevisiae S288c] Length = 353 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L+E T Q A + LK +++A L H+LF GPPG GKT+ + +EL Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82 >gi|255761620|gb|ACU32853.1| cell division cycle 48 protein [Toxoplasma gondii] Length = 806 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 515 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 546 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ + L E+ + + Sbjct: 242 VLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFEEAEKNAPAI 301 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 302 IFIDEIDSIA 311 >gi|255540583|ref|XP_002511356.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] gi|223550471|gb|EEF51958.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] Length = 804 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 513 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 572 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 573 LFFDELDSIA 582 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 250 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 309 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 310 IFIDEIDSIA 319 >gi|171683235|ref|XP_001906560.1| hypothetical protein [Podospora anserina S mat+] gi|170941577|emb|CAP67231.1| unnamed protein product [Podospora anserina S mat+] Length = 551 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 19/123 (15%) Query: 32 GQVEACSNL-KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS---- 86 GQ +AC +L ++F+ A+ +LF GP G GKT LAQ + + L ++ ++ Sbjct: 249 GQTQACQSLVEIFMAQLALGADRPIILLFAGPSGHGKTELAQNMGKLLSLDLQTVDCTNL 308 Query: 87 -------GPVIAKAG-DLAALLTNLED-----RDVLFIDEIHRLSIIVEE-ILYPAMEDF 132 GP AG D ++++ N D R ++F+DE + V+E +L P Sbjct: 309 RTSMDLFGPFFPFAGYDQSSVVNNFLDEHKSQRSIVFLDEFEKTQPNVQEALLLPFQSGL 368 Query: 133 QLD 135 LD Sbjct: 369 YLD 371 >gi|45269731|gb|AAS56246.1| YJR068W [Saccharomyces cerevisiae] Length = 353 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L+E T Q A + LK +++A L H+LF GPPG GKT+ + +EL Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82 >gi|18414193|ref|NP_568114.1| cell division cycle protein 48, putative / CDC48, putative [Arabidopsis thaliana] gi|28201771|sp|Q9LZF6|CD48E_ARATH RecName: Full=Cell division control protein 48 homolog E; Short=AtCDC48e; AltName: Full=Transitional endoplasmic reticulum ATPase E gi|26449352|dbj|BAC41803.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis thaliana] gi|26452166|dbj|BAC43171.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis thaliana] gi|30102750|gb|AAP21293.1| At5g03340 [Arabidopsis thaliana] gi|332003204|gb|AED90587.1| cell division control protein 48-e [Arabidopsis thaliana] Length = 810 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 576 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 577 LFFDELDSIA 586 Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 244 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 303 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 304 IFIDEIDSIA 313 >gi|312876101|ref|ZP_07736089.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor lactoaceticus 6A] gi|311797087|gb|EFR13428.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor lactoaceticus 6A] Length = 616 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE ++ N + +IE A +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 178 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L D+ V+FIDEI Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 269 >gi|297829516|ref|XP_002882640.1| hypothetical protein ARALYDRAFT_478309 [Arabidopsis lyrata subsp. lyrata] gi|297328480|gb|EFH58899.1| hypothetical protein ARALYDRAFT_478309 [Arabidopsis lyrata subsp. lyrata] Length = 809 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 576 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 577 LFFDELDSIA 586 Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 244 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 303 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 304 IFIDEIDSIA 313 >gi|297810407|ref|XP_002873087.1| hypothetical protein ARALYDRAFT_908201 [Arabidopsis lyrata subsp. lyrata] gi|297318924|gb|EFH49346.1| hypothetical protein ARALYDRAFT_908201 [Arabidopsis lyrata subsp. lyrata] Length = 810 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 576 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 577 LFFDELDSIA 586 Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 244 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 303 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 304 IFIDEIDSIA 313 >gi|291279420|ref|YP_003496255.1| cell division protein FtsH [Deferribacter desulfuricans SSM1] gi|290754122|dbj|BAI80499.1| cell division protein FtsH [Deferribacter desulfuricans SSM1] Length = 613 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L D+ + Sbjct: 190 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQGKKHAPCI 249 Query: 109 LFIDEI 114 +FIDEI Sbjct: 250 IFIDEI 255 >gi|224133614|ref|XP_002321618.1| predicted protein [Populus trichocarpa] gi|222868614|gb|EEF05745.1| predicted protein [Populus trichocarpa] Length = 813 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 523 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 582 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 583 LFFDELDSIA 592 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 250 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 309 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 310 IFIDEIDSIA 319 >gi|153956485|ref|YP_001397250.1| La-related protease [Clostridium kluyveri DSM 555] gi|219856788|ref|YP_002473910.1| hypothetical protein CKR_3445 [Clostridium kluyveri NBRC 12016] gi|146349343|gb|EDK35879.1| La-related protease [Clostridium kluyveri DSM 555] gi|219570512|dbj|BAH08496.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 631 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 93/239 (38%), Gaps = 62/239 (25%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 LS+N+ + LLRP T +E GQ A ++ +K + H++ GPPG+GK Sbjct: 157 LSKNIQR------LLRPETFDEIIGQRRAVESI-----LSKIASPYPQHIILYGPPGVGK 205 Query: 68 TTLAQVVARE----------------------LGVNFRSTSGPVIAKAG---------DL 96 TT A++ E L + R + P++ DL Sbjct: 206 TTAARIALEEAKKLKFTPFNKDAKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGTRRDL 265 Query: 97 A---------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARS 146 A L+T VLFIDEI L +++ L +ED +++ P S Sbjct: 266 AEGGIPEPKLGLVTEAHG-GVLFIDEIGELDEMLQNKLLKVLEDKRVEFSSSYYDPDDES 324 Query: 147 VKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196 + + + F LI ATTR NP + I+D+++IV+ A Sbjct: 325 IPKYIKYLFDKGAPADFLLIGATTREPGEINPALRSRCTEVYFEPLSIKDIQSIVENAA 383 >gi|110289141|gb|AAP53974.2| Cell division cycle protein 48, putative, expressed [Oryza sativa Japonica Group] gi|222612898|gb|EEE51030.1| hypothetical protein OsJ_31677 [Oryza sativa Japonica Group] Length = 808 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 579 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 580 LFFDELDSIA 589 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 247 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 306 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 307 IFIDEIDSIA 316 >gi|98962497|gb|ABF59516.1| putative spindle disassembly related protein CDC48 [Nicotiana tabacum] Length = 808 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|328950150|ref|YP_004367485.1| ATPase associated with various cellular activities AAA_3 [Marinithermus hydrothermalis DSM 14884] gi|328450474|gb|AEB11375.1| ATPase associated with various cellular activities AAA_3 [Marinithermus hydrothermalis DSM 14884] Length = 310 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 10/91 (10%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------- 106 HVL PG GKTTLA+ VAR LG+ FR DL + E R Sbjct: 36 HVLIEDVPGTGKTTLARAVARSLGLPFRRVQFTPDLLPSDLTGVNVYREGRFHFQPGPVF 95 Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 VL DEI+R + + L AM +FQ+ + Sbjct: 96 TSVLLADEINRATPKTQSALLEAMAEFQVTV 126 >gi|312128219|ref|YP_003993093.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor hydrothermalis 108] gi|311778238|gb|ADQ07724.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor hydrothermalis 108] Length = 616 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE ++ N + +IE A +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 178 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L D+ V+FIDEI Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 269 >gi|302871266|ref|YP_003839902.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor obsidiansis OB47] gi|302574125|gb|ADL41916.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor obsidiansis OB47] Length = 616 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE ++ N + +IE A +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 178 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L D+ V+FIDEI Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNSPCVVFIDEI 269 >gi|237831105|ref|XP_002364850.1| peroxisomal-type ATPase, putative [Toxoplasma gondii ME49] gi|211962514|gb|EEA97709.1| peroxisomal-type ATPase, putative [Toxoplasma gondii ME49] Length = 705 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E GVNF S GP Sbjct: 472 ILLFGPPGTGKTLLAKAVATECGVNFISVKGP 503 >gi|207347038|gb|EDZ73351.1| YDL126Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 724 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ NF S GP Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 555 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ + L E+ + + Sbjct: 251 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 311 IFIDEIDSIA 320 >gi|15232776|ref|NP_187595.1| CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding [Arabidopsis thaliana] gi|1705677|sp|P54609|CD48A_ARATH RecName: Full=Cell division control protein 48 homolog A; Short=AtCDC48a gi|6681343|gb|AAF23260.1|AC015985_18 putative transitional endoplasmic reticulum ATPase [Arabidopsis thaliana] gi|1019904|gb|AAC49120.1| cell division cycle protein [Arabidopsis thaliana] gi|17473551|gb|AAL38252.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis thaliana] gi|20453130|gb|AAM19807.1| AT3g09840/F8A24_11 [Arabidopsis thaliana] gi|110735114|gb|ABG89127.1| CDC48a [synthetic construct] gi|222424942|dbj|BAH20422.1| AT3G09840 [Arabidopsis thaliana] gi|332641299|gb|AEE74820.1| cell division control protein 48-A [Arabidopsis thaliana] Length = 809 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 576 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 577 LFFDELDSIA 586 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 244 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 303 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 304 IFIDEIDSIA 313 >gi|323304258|gb|EGA58032.1| Rfc2p [Saccharomyces cerevisiae FostersB] Length = 348 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+ L+E T Q A + LK +++A L H+LF GPPG GKT+ + +EL Sbjct: 28 VEKYRPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82 >gi|320581211|gb|EFW95432.1| DNA replication factor C [Pichia angusta DL-1] Length = 325 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP L++ GQ + ++ F A+ + H+LF GPPG GKT+ +AREL G N Sbjct: 13 RPAKLDDVYGQKDVVQTVRKF-----AKEGRIPHLLFYGPPGTGKTSTIIALARELYGKN 67 Query: 82 FRS 84 +R+ Sbjct: 68 YRN 70 >gi|224047252|ref|XP_002194423.1| PREDICTED: nuclear VCP-like [Taeniopygia guttata] Length = 857 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 619 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 650 >gi|185177972|pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP gi|185177973|pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP gi|185177974|pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP gi|185177975|pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP gi|185177976|pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP gi|185177977|pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP gi|185177978|pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP gi|185177979|pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP gi|185177980|pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP gi|185177981|pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP gi|185177982|pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP gi|185177983|pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP gi|185177984|pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP gi|185177985|pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 52 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 111 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 112 LFFDELDSIA 121 >gi|189485257|ref|YP_001956198.1| ATP-dependent Clp protease ATP-binding subunit X [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287216|dbj|BAG13737.1| ATP-dependent Clp protease ATP-binding subunit X [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 412 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 32/143 (22%) Query: 8 LSRNVSQEDADISLLR---PRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL----- 54 L N++++++ ++LR P L+ F GQ A L V + R EA+ Sbjct: 40 LFENLNKKESKETMLRLPKPGELKRFLDAYVIGQEHAKKILSVAVYNHYKRLEAIVSKDD 99 Query: 55 -----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------ 103 +VL +GP G GKT LAQ +A+ L V F + V+ +AG + + N+ Sbjct: 100 VELQKSNVLLIGPTGAGKTLLAQTLAKILDVPFAISDATVLTEAGYVGEDVENILLRLIQ 159 Query: 104 --------EDRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 160 NASFDIRKAEKGIIYIDEIDKIS 182 >gi|325091041|gb|EGC44351.1| cell division control protein [Ajellomyces capsulatus H88] Length = 771 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 482 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 513 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 257 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 317 IFIDEIDSIA 326 >gi|323359782|ref|YP_004226178.1| ATP-dependent protease Clp, ATPase subunit [Microbacterium testaceum StLB037] gi|323276153|dbj|BAJ76298.1| ATP-dependent protease Clp, ATPase subunit [Microbacterium testaceum StLB037] Length = 422 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 36/147 (24%) Query: 8 LSRNVSQEDADISLLRPRT----LEEFT-GQVEACSNLKVFI-------------EAAKA 49 ++ + + E A+ L +PR LEE+ GQ A L V + + A+A Sbjct: 50 MAESSAGEVAEFDLPKPREIFSFLEEYVVGQEPAKRALAVAVYNHYKRVRSHGTLQPAEA 109 Query: 50 RAEALD----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-- 103 RAE +D ++L +GP G GKT LAQ +A+ L V F + +AG + + N+ Sbjct: 110 RAEEIDIAKSNILLLGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILL 169 Query: 104 -----EDRDV-------LFIDEIHRLS 118 D DV ++IDE+ +++ Sbjct: 170 KLLQAADFDVKRAETGIIYIDEVDKIA 196 >gi|320591119|gb|EFX03558.1| cell division control protein cdc48 [Grosmannia clavigera kw1407] Length = 828 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 536 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 567 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 262 VLLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 321 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 322 IFIDEIDSIA 331 >gi|294776010|ref|ZP_06741506.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides vulgatus PC510] gi|294450148|gb|EFG18652.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides vulgatus PC510] Length = 742 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69 +++A + L R + GQ EA + ++ AKA + L +LFVGP G+GKT Sbjct: 438 EDNATLETLHERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497 Query: 70 LAQVVARELGV 80 +A+V+A ELG+ Sbjct: 498 VAKVLASELGI 508 >gi|242036895|ref|XP_002465842.1| hypothetical protein SORBIDRAFT_01g046840 [Sorghum bicolor] gi|241919696|gb|EER92840.1| hypothetical protein SORBIDRAFT_01g046840 [Sorghum bicolor] Length = 810 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 578 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 579 LFFDELDSIA 588 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 246 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 305 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 306 IFIDEIDSIA 315 >gi|255556934|ref|XP_002519500.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] gi|223541363|gb|EEF42914.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] Length = 806 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|224121826|ref|XP_002318682.1| predicted protein [Populus trichocarpa] gi|222859355|gb|EEE96902.1| predicted protein [Populus trichocarpa] Length = 799 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 509 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 568 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 569 LFFDELDSIA 578 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 236 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 295 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 296 IFIDELDSIA 305 >gi|115450773|ref|NP_001048987.1| Os03g0151800 [Oryza sativa Japonica Group] gi|108706222|gb|ABF94017.1| Cell division cycle protein 48, putative, expressed [Oryza sativa Japonica Group] gi|113547458|dbj|BAF10901.1| Os03g0151800 [Oryza sativa Japonica Group] gi|125542437|gb|EAY88576.1| hypothetical protein OsI_10049 [Oryza sativa Indica Group] gi|125584947|gb|EAZ25611.1| hypothetical protein OsJ_09438 [Oryza sativa Japonica Group] gi|215704352|dbj|BAG93786.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704409|dbj|BAG93843.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704637|dbj|BAG94265.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704711|dbj|BAG94339.1| unnamed protein product [Oryza sativa Japonica Group] Length = 809 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 579 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 580 LFFDELDSIA 589 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 247 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 306 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 307 IFIDEIDSIA 316 >gi|50513624|pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 353 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L+E T Q A + LK +++A L H+LF GPPG GKT+ + +EL Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82 >gi|11265361|pir||T48355 transitional endoplasmic reticulum ATPase - Arabidopsis thaliana gi|7378614|emb|CAB83290.1| transitional endoplasmic reticulum ATPase [Arabidopsis thaliana] Length = 843 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 550 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 609 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 610 LFFDELDSIA 619 Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 277 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 336 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 337 IFIDEIDSIA 346 >gi|330834114|ref|YP_004408842.1| replication factor C large subunit [Metallosphaera cuprina Ar-4] gi|329566253|gb|AEB94358.1| replication factor C large subunit [Metallosphaera cuprina Ar-4] Length = 437 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 16/104 (15%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80 RP +L+E Q + L+ +I++ VL GPPG+GKTT+A +A+ G+ Sbjct: 10 RPNSLDEIENQEDVKEELRSWIDSWIKGKPNYKSVLLYGPPGIGKTTMALALAKSYGLEI 69 Query: 81 ---------NFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEI 114 N S G + KA +L + DR ++F+DEI Sbjct: 70 IEMNASDTRNVTSLRG-IAEKASVTGSLFS---DRGKLIFLDEI 109 >gi|312623034|ref|YP_004024647.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor kronotskyensis 2002] gi|312203501|gb|ADQ46828.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor kronotskyensis 2002] Length = 616 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE ++ N + +IE A +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 178 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L D+ V+FIDEI Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 269 >gi|194227313|ref|XP_001489788.2| PREDICTED: similar to Nuclear valosin-containing protein-like (Nuclear VCP-like protein) (NVLp) [Equus caballus] Length = 1175 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 649 >gi|147782460|emb|CAN61919.1| hypothetical protein VITISV_038729 [Vitis vinifera] Length = 802 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 297 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 298 IFIDELDSIA 307 >gi|261328426|emb|CBH11403.1| peroxisome assembly protein, putative [Trypanosoma brucei gambiense DAL972] Length = 981 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ VA E+ +NF + GP Sbjct: 720 ILFYGPPGCGKTLLAKAVATEMNMNFMAVKGP 751 >gi|258566938|ref|XP_002584213.1| cell division cycle protein 48 [Uncinocarpus reesii 1704] gi|237905659|gb|EEP80060.1| cell division cycle protein 48 [Uncinocarpus reesii 1704] Length = 806 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 523 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 554 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 249 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 308 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 309 IFIDEIDSIA 318 >gi|145591415|ref|YP_001153417.1| ATPase [Pyrobaculum arsenaticum DSM 13514] gi|145283183|gb|ABP50765.1| ATPase associated with various cellular activities, AAA_3 [Pyrobaculum arsenaticum DSM 13514] Length = 302 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 6/59 (10%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83 + L +F V NLK+ + A A HVLF PPGLGKTTLA+++A+ LG+ F+ Sbjct: 6 QVLSQF--YVTDVENLKLILAAVVAGG----HVLFNDPPGLGKTTLAKLLAKSLGLVFK 58 >gi|7522545|pir||T11652 probable transitional endoplasmic reticulum ATPase - fission yeast (Schizosaccharomyces pombe) (fragment) Length = 432 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 151 VLFFGPPGTGKTLLAKAIANECSANFISVKGP 182 >gi|114332440|ref|YP_748662.1| recombination factor protein RarA [Nitrosomonas eutropha C91] gi|114309454|gb|ABI60697.1| Recombination protein MgsA [Nitrosomonas eutropha C91] Length = 438 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 23/155 (14%) Query: 22 LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+TL+ GQ + L++ + K + ++ GPPG GKTTLA+++A+ Sbjct: 18 LRPQTLDNVIGQPHLLGSGKPLRLAFISGKPHS-----MILWGPPGSGKTTLARLMAQAF 72 Query: 79 GVNFRSTSGPVIAKAGDLAA-------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 F + S V++ D+ L + +LF+DE+HR + ++ P +E Sbjct: 73 DTEFIAISA-VLSGVKDIREAIERARFALQHTGRSTLLFVDEVHRFNKAQQDAFLPHVEQ 131 Query: 132 FQLDLMVGEGPSARSVKIN---LSR---FTLIAAT 160 L +G S ++N LSR +TL A T Sbjct: 132 -GLITFIGATTENPSFEVNGALLSRAQVYTLNALT 165 >gi|332982883|ref|YP_004464324.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON] gi|332700561|gb|AEE97502.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON] Length = 595 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 12/118 (10%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEA----AKARAEALDHVLFVGPPGLGK 67 V +D DIS+++ ++ E+ + L FI+ AK A V+ GPPG GK Sbjct: 142 VKPKDEDISVVKFDSVAGNQEAKESLAELVDFIKEPEKYAKYGARIPRGVILYGPPGTGK 201 Query: 68 TTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------EDRDVLFIDEIHRL 117 T LA+ +A E GV F + SG V G AA + +L + + V+FIDEI L Sbjct: 202 TLLARALAGEAGVPFYAVSGSDFVQMYVGVGAARIRSLFKKAREQGKCVIFIDEIDAL 259 >gi|308510670|ref|XP_003117518.1| CRE-CDC-48.2 protein [Caenorhabditis remanei] gi|308242432|gb|EFO86384.1| CRE-CDC-48.2 protein [Caenorhabditis remanei] Length = 812 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 578 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 579 LFFDELDSIA 588 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108 +L GPPG GKT +A+ VA E G F +GP I +L E + Sbjct: 246 ILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAI 305 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 306 LFIDEIDAIA 315 >gi|225456951|ref|XP_002281671.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297733738|emb|CBI14985.3| unnamed protein product [Vitis vinifera] Length = 814 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 523 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 582 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 583 LFFDELDSIA 592 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 250 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 309 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 310 IFIDELDSIA 319 >gi|255556938|ref|XP_002519502.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] gi|223541365|gb|EEF42916.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] Length = 805 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|254168540|ref|ZP_04875384.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] gi|197622595|gb|EDY35166.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] Length = 727 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 19/127 (14%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLF 59 +S ++E IS++ T E+ G E ++ +E E + VL Sbjct: 165 ISEKPAKESQGISMV---TYEDIGGLKEEIKKIREMVELPLRHPELFERLGIEPPKGVLL 221 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111 GPPG GKT LA+ VA E +F SGP I +L + +D ++FI Sbjct: 222 YGPPGTGKTLLAKAVANEANAHFIYLSGPEIMSKFYGQSEENLREIFKEAQDNAPSIIFI 281 Query: 112 DEIHRLS 118 DEI ++ Sbjct: 282 DEIDSIA 288 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E NF S GP Sbjct: 492 ILLYGPPGTGKTLLAKAVATESEANFISVKGP 523 >gi|17532375|ref|NP_495705.1| Cell Division Cycle related family member (cdc-48.2) [Caenorhabditis elegans] gi|6226902|sp|P54812|TERA2_CAEEL RecName: Full=Transitional endoplasmic reticulum ATPase homolog 2; AltName: Full=Cell division cycle-related protein 48.2; AltName: Full=p97/CDC48 homolog 2 gi|3874892|emb|CAA88105.1| C. elegans protein C41C4.8, confirmed by transcript evidence [Caenorhabditis elegans] gi|3875715|emb|CAA88314.1| C. elegans protein C41C4.8, confirmed by transcript evidence [Caenorhabditis elegans] Length = 810 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 578 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 579 LFFDELDSIA 588 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108 +L GPPG GKT +A+ VA E G F +GP I +L E + Sbjct: 246 ILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAI 305 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 306 LFIDEIDAIA 315 >gi|15669688|ref|NP_248501.1| AAA ATPase family protein [Methanocaldococcus jannaschii DSM 2661] gi|3915816|sp|Q58889|PRS2_METJA RecName: Full=Putative 26S protease regulatory subunit homolog MJ1494 gi|2826420|gb|AAB99505.1| AAA superfamily ATPase, similar to FtsH [Methanocaldococcus jannaschii DSM 2661] Length = 371 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 12/100 (12%) Query: 27 LEEFTGQVEA---CSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 E GQ EA C + ++E K E A +VLF GPPG GKT +A+ +A E +F Sbjct: 123 FSEIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSF 182 Query: 83 RSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEI 114 P + GD + ++ L R ++FIDE+ Sbjct: 183 ILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDEL 222 >gi|150003220|ref|YP_001297964.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Bacteroides vulgatus ATCC 8482] gi|149931644|gb|ABR38342.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Bacteroides vulgatus ATCC 8482] Length = 742 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69 +++A + L R + GQ EA + ++ AKA + L +LFVGP G+GKT Sbjct: 438 EDNATLETLHERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497 Query: 70 LAQVVARELGV 80 +A+V+A ELG+ Sbjct: 498 VAKVLASELGI 508 >gi|2492504|sp|Q96372|CDC48_CAPAN RecName: Full=Cell division cycle protein 48 homolog gi|1669660|emb|CAA70565.1| protein of AAA family [Capsicum annuum] Length = 805 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|328792628|ref|XP_392908.4| PREDICTED: ATPase WRNIP1-like isoform 1 [Apis mellifera] Length = 528 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 21/152 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL + GQ+ + + + +++ GPPG GKT+LA V+A + Sbjct: 109 MRPTTLLGYVGQLHILGPSTILYQLLNKFE--IPNIILWGPPGCGKTSLANVIAH---IC 163 Query: 82 FRSTSGPV-----------IAKAGDLAALLTN---LEDRDVLFIDEIHRLSIIVEEILYP 127 ++G + + + ++ + TN R V+F+DEIHR + +++ P Sbjct: 164 KTKSNGKIRYVKLSAAMAGVNEVKEIITIATNELKFNRRTVVFMDEIHRFNKNQQDVFLP 223 Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157 +E + L+ E PS LSR +I Sbjct: 224 HVESGIITLVGATTENPSFSLNSALLSRCRVI 255 >gi|291191038|pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 78 >gi|222526350|ref|YP_002570821.1| ATP-dependent protease La [Chloroflexus sp. Y-400-fl] gi|222450229|gb|ACM54495.1| ATP-dependent protease La [Chloroflexus sp. Y-400-fl] Length = 825 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 47/218 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L + +AR LG F R++ G V +A G + + Sbjct: 371 LCFVGPPGVGKTSLGRSIARALGRKFVRTSLGGVRDEAEIRGHRRTYIGALPGRIIQAMK 430 Query: 102 NLEDRDVLFI-DEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148 + R ++I DE+ ++ I E+L P A D L+L Sbjct: 431 TAKSRSPVYILDEVDKIGIDFRGDPTSALLEVLDPEQNNAFSDHYLEL-----------P 479 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208 +LS+ IA ++ + PL+DR I I ++ Y ED K + R G + + Sbjct: 480 FDLSKVIFIATANQLEPIPLPLRDRMEI-IEISGY-TEDEKMEIAR-----GFLIPKQRE 532 Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +R G +++ +R++ A + + REIA Sbjct: 533 FH-GLREDQIEFTDGAIIKLIREYTREAGVRGLEREIA 569 >gi|6807907|emb|CAB70717.1| hypothetical protein [Homo sapiens] Length = 431 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 139 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 198 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 199 LFFDELDSIA 208 >gi|321461136|gb|EFX72171.1| hypothetical protein DAPPUDRAFT_308570 [Daphnia pulex] Length = 802 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 571 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 572 LFFDELDSIA 581 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 239 ILLFGPPGTGKTLIARAVANETGAFFYLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 298 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 299 IFIDEL 304 >gi|256810841|ref|YP_003128210.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86] gi|256794041|gb|ACV24710.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86] Length = 371 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 12/100 (12%) Query: 27 LEEFTGQVEA---CSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 E GQ EA C + ++E K E A +VLF GPPG GKT +A+ +A E +F Sbjct: 123 FSEIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSF 182 Query: 83 RSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEI 114 P + GD + ++ L R ++FIDE+ Sbjct: 183 ILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDEL 222 >gi|239819394|gb|ACS28251.1| cell division control protein [Nicotiana glutinosa] Length = 805 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|260811638|ref|XP_002600529.1| hypothetical protein BRAFLDRAFT_276686 [Branchiostoma floridae] gi|229285816|gb|EEN56541.1| hypothetical protein BRAFLDRAFT_276686 [Branchiostoma floridae] Length = 718 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 428 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQAAPCV 487 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 488 LFFDELDSIA 497 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG+GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 155 ILLYGPPGVGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 214 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 215 IFIDEIDAIA 224 >gi|159029215|emb|CAO87575.1| ftsH [Microcystis aeruginosa PCC 7806] Length = 654 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 49/108 (45%), Gaps = 19/108 (17%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVA 75 P T + G EA + LK +E K AE + VL VGPPG GKT LA+ VA Sbjct: 200 PITFSDVAGAEEAKTELKEIVEFLK-DAERFNKIGARIPKGVLLVGPPGTGKTLLAKAVA 258 Query: 76 RELGVNFRSTS---------GPVIAKAGDLAALLTNLEDRDVLFIDEI 114 E GV F S S G A+ DL A ++FIDE+ Sbjct: 259 GEAGVTFFSISASEFVELFVGTGAARVRDLFAQAKK-NAPSIIFIDEL 305 >gi|152990129|ref|YP_001355851.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitratiruptor sp. SB155-2] gi|151421990|dbj|BAF69494.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitratiruptor sp. SB155-2] Length = 729 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 5/82 (6%) Query: 6 GLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFV 60 GL + V+ +D +I L + E GQ EA L + I+ ++A + + LFV Sbjct: 422 GLPPQRVTSDDLEILKNLEEKLKERVLGQEEAVEQLAMAIKRSRAGLNPPNKPIGSFLFV 481 Query: 61 GPPGLGKTTLAQVVARELGVNF 82 GP G+GKT LA+ +AR +GV+F Sbjct: 482 GPTGVGKTELAKELARTMGVHF 503 >gi|156094884|ref|XP_001613478.1| cell division cycle ATPase [Plasmodium vivax SaI-1] gi|148802352|gb|EDL43751.1| cell division cycle ATPase, putative [Plasmodium vivax] Length = 1089 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 8/80 (10%) Query: 47 AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLE 104 AK + +L GPPG GKT LA+ +A E NF S GP + G+ A + +L Sbjct: 823 AKFNSNYNKGILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLF 882 Query: 105 DRD------VLFIDEIHRLS 118 D+ ++F DEI L+ Sbjct: 883 DKARAASPCIIFFDEIDSLA 902 >gi|119873181|ref|YP_931188.1| TIP49-like protein [Pyrobaculum islandicum DSM 4184] gi|119674589|gb|ABL88845.1| TBP-interacting protein TIP49 [Pyrobaculum islandicum DSM 4184] Length = 451 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89 F GQ EA + ++ K A VL VGPPG GKT LA +ARELG + P Sbjct: 39 FVGQTEAREAAYIVVKMIKEGKFAGKGVLIVGPPGTGKTALALGIARELG-----SETPF 93 Query: 90 IA-KAGDLAAL 99 +A AG++ +L Sbjct: 94 VAISAGEIYSL 104 >gi|17537217|ref|NP_496814.1| Member of AAA family binding CED-4 family member (mac-1) [Caenorhabditis elegans] gi|14530647|emb|CAB55106.2| C. elegans protein Y48C3A.7, confirmed by transcript evidence [Caenorhabditis elegans] Length = 813 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 571 ILLCGPPGCGKTLLAKAVANETGMNFISVKGP 602 >gi|311900327|dbj|BAJ32735.1| putative ATPase [Kitasatospora setae KM-6054] Length = 1124 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 80/202 (39%), Gaps = 43/202 (21%) Query: 45 EAAKARAEALDHVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKA-------- 93 EA A H++F GPPG GKTT+A++ R ELGV G ++ A Sbjct: 887 EAGLPTARISHHLVFAGPPGTGKTTVARLYGRLLAELGV---LPGGQLVETARADLVGRY 943 Query: 94 -GDLAALLTNLEDR---DVLFIDEIHRLS----------IIVEEILYPAMEDFQLDLMVG 139 G A L DR VLFIDE + L+ + L MED + +++V Sbjct: 944 IGHTAQLTREAFDRARGGVLFIDEAYTLTPRHGSGADFGQEAVDTLMKLMEDHRDEVVV- 1002 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198 A + + F L +NP L RF I Y ++L TIV R A+ Sbjct: 1003 ---IAAGYEDEMRHF----------LASNPGLASRFTRQIEFGHYTDDELVTIVGRHAET 1049 Query: 199 TGLAVTDEAACEIAMRSRGTPR 220 G + +A PR Sbjct: 1050 AGYTCAPQTLTALARHFAAVPR 1071 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 105/279 (37%), Gaps = 55/279 (19%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFRS-----TSGPVIAKAGDLAALLTNLEDRD 107 H++F GPPG GKTT+A++ ELGV T ++A AL T R Sbjct: 621 HLVFAGPPGTGKTTVARLYGSILAELGVLREGHLVEVTRADLVASVIGGTALKTTEVFRS 680 Query: 108 ----VLFIDEIHRLSIIVE-----------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 VLF+DE + LS + L MED + D++V ++ Sbjct: 681 ALGGVLFVDEAYTLSTGGGGSGPDFGREAVDTLVKLMEDHREDVVV----IVAGYSAEMT 736 Query: 153 RFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 F L NP L RF + Y +++L TIV R A G + D + Sbjct: 737 DF----------LAVNPGLASRFSRTVEFANYSVDELVTIVGRTAAGHGYELADGTGEAL 786 Query: 212 AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA----IDKMGFDQLDLRY 267 R L R DF A+ + E+ D RLA I QL Sbjct: 787 --------RALFERLPRGEDFGNGRAARKVFEEMVDRQATRLATGAEISDRDLAQLLAED 838 Query: 268 LTMIARNFGGGPVGIETIS-----AGLSEPRDAIEDLIE 301 + A G G E ++ GL ++ +EDL++ Sbjct: 839 VAPAATRPAGRGDGTELLAELRAMVGLPAAKEQVEDLVD 877 >gi|254166928|ref|ZP_04873782.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] gi|289596082|ref|YP_003482778.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] gi|197624538|gb|EDY37099.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] gi|289533869|gb|ADD08216.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] Length = 727 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 19/127 (14%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLF 59 +S ++E IS++ T E+ G E ++ +E E + VL Sbjct: 165 ISEKPAKESQGISMV---TYEDIGGLKEEIKKIREMVELPLRHPELFERLGIEPPKGVLL 221 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111 GPPG GKT LA+ VA E +F SGP I +L + +D ++FI Sbjct: 222 YGPPGTGKTLLAKAVANEANAHFIYLSGPEIMSKFYGQSEENLREIFKEAQDNAPSIIFI 281 Query: 112 DEIHRLS 118 DEI ++ Sbjct: 282 DEIDSIA 288 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E NF S GP Sbjct: 492 ILLYGPPGTGKTLLAKAVATESEANFISVKGP 523 >gi|225440045|ref|XP_002282146.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297741633|emb|CBI32765.3| unnamed protein product [Vitis vinifera] Length = 806 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|150401783|ref|YP_001325549.1| replication factor C large subunit [Methanococcus aeolicus Nankai-3] gi|166225152|sp|A6UWR5|RFCL_META3 RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|150014486|gb|ABR56937.1| AAA ATPase central domain protein [Methanococcus aeolicus Nankai-3] Length = 474 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+T+ E G + LK +IE E VL VGPPG GKTTL +A + Sbjct: 4 VEKYRPKTMSEIVGNNKIKEELKNWIEEI-LHNEIPKPVLLVGPPGCGKTTLTNALANDY 62 Query: 79 G 79 G Sbjct: 63 G 63 >gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348] gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348] Length = 326 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 6/61 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPR+L++ Q + LK F+ + + + H+LF GPPG GKTT A + +L G N Sbjct: 12 RPRSLDDIVNQRDIVERLKHFV-----KEKNMPHLLFAGPPGTGKTTSALALVHDLYGEN 66 Query: 82 F 82 + Sbjct: 67 Y 67 >gi|11095437|gb|AAG29874.1| valosin-containing protein [Homo sapiens] Length = 305 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 142 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 201 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 202 LFFDELDSIA 211 >gi|2127780|pir||E64486 ATP-dependent 26S proteosome regulatory subunit 8 homolog - Methanococcus jannaschii Length = 373 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 12/100 (12%) Query: 27 LEEFTGQVEA---CSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 E GQ EA C + ++E K E A +VLF GPPG GKT +A+ +A E +F Sbjct: 125 FSEIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSF 184 Query: 83 RSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEI 114 P + GD + ++ L R ++FIDE+ Sbjct: 185 ILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDEL 224 >gi|320100449|ref|YP_004176041.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM 2162] gi|319752801|gb|ADV64559.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM 2162] Length = 746 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 26/120 (21%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ EA ++ +E E +H +L GPPG GKT LA+ +A E Sbjct: 186 TWEDIGDLEEAKQKIREIVELPMKYPELFEHLGIEPPKGILLYGPPGTGKTLLAKALANE 245 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------------DVLFIDEIHRLSIIVEEI 124 +G F + +GP I ++ E+R V+FIDEI ++ EE+ Sbjct: 246 IGAYFITINGPEI-----MSKFYGESEERLRKIFEEAQANAPAVIFIDEIDSIAPKREEV 300 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E G NF + GP V++K G+ + + R V Sbjct: 501 ILLFGPPGTGKTLLAKAVATESGANFIAIRGPEVLSKWVGESEKAIRQIFRRARMVAPAV 560 Query: 109 LFIDEIHRLS 118 +F DEI ++ Sbjct: 561 VFFDEIDSIA 570 >gi|316965784|gb|EFV50458.1| putative ATPase, AAA family [Trichinella spiralis] Length = 781 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ +A E G+NF S GP Sbjct: 442 ILLFGPPGCGKTLLAKAIANESGINFISVKGP 473 >gi|265753170|ref|ZP_06088739.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_33FAA] gi|263236356|gb|EEZ21851.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_33FAA] Length = 745 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69 +++A + L R + GQ EA + ++ AKA + L +LFVGP G+GKT Sbjct: 438 EDNATLETLHERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497 Query: 70 LAQVVARELGV 80 +A+V+A ELG+ Sbjct: 498 VAKVLASELGI 508 >gi|296121985|ref|YP_003629763.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Planctomyces limnophilus DSM 3776] gi|296014325|gb|ADG67564.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Planctomyces limnophilus DSM 3776] Length = 427 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 41/202 (20%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + NL Sbjct: 125 NILLIGPTGSGKTLLAKTLARLLQVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDI 184 Query: 104 --EDRDVLFIDEIHRLS------IIVEEILYPAMEDFQLDLMVG-----------EGPSA 144 R ++FIDEI ++ I ++ ++ L ++ G + P Sbjct: 185 EAAQRGIVFIDEIDKIGKTSQNVSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQ 244 Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP-IRLNFYEIEDLKTIVQRGAKLTGLAV 203 + ++I+ S I T VG L + + R G I ++D KT R KL A Sbjct: 245 QYIQIDTSNILFICGGTFVG-LEDIIAKRLGKKTIGFGGSSVDDQKT---RSGKLLAHAC 300 Query: 204 TDEAACEIAMRSRGTPRIAGRL 225 TD+ E M P + GRL Sbjct: 301 TDD-VIEFGM----IPELVGRL 317 >gi|170289856|ref|YP_001736672.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170173936|gb|ACB06989.1| AAA family ATPase, CDC48 subfamily [Candidatus Korarchaeum cryptofilum OPF8] Length = 732 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 17/118 (14%) Query: 24 PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR T E+ G +A ++ +E E H VL GPPG GKT LA+ V Sbjct: 175 PRVTYEDIGGLKDAIQKIREMVELPLRHPELFRHLGIDPPKGVLLYGPPGTGKTLLAKAV 234 Query: 75 ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 A E +F S SGP I G+ L + + ++F+DEI ++ EE+ Sbjct: 235 ANESNAHFISISGPEIMSKYYGESEKRLREIFEEAEKNAPSIIFMDEIDAIAPKREEV 292 Score = 42.7 bits (99), Expect = 0.072, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE EA+ AR +L GPPG GKT LA+ VA E NF S G Sbjct: 464 EELKMAVEWPLKYPELFEASGARQPK--GILLFGPPGTGKTLLAKAVANESEANFISVKG 521 Query: 88 PVI 90 P I Sbjct: 522 PEI 524 >gi|1705678|sp|P54774|CDC48_SOYBN RecName: Full=Cell division cycle protein 48 homolog; AltName: Full=Valosin-containing protein homolog; Short=VCP gi|862480|gb|AAA80587.1| valosin-containing protein [Glycine max] gi|86212372|gb|ABC87759.1| plamsma membrane-associated AAA-ATPase [Glycine max] Length = 807 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|117926915|ref|YP_867532.1| ATP-dependent protease ATP-binding subunit ClpX [Magnetococcus sp. MC-1] gi|166214782|sp|A0LDT3|CLPX_MAGSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|117610671|gb|ABK46126.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Magnetococcus sp. MC-1] Length = 420 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 25/118 (21%) Query: 26 TLEEFT-GQVEACSNLKVFIEAAKARAEALD----------HVLFVGPPGLGKTTLAQVV 74 TL+++ GQ A L V + R E+ D +VL +GP G GKT LAQ + Sbjct: 71 TLDDYVIGQDNAKRTLAVAVYNHYKRLESNDTSADVEISKSNVLMIGPTGSGKTLLAQTL 130 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118 AR L V F T + +AG + + N+ R ++FIDEI ++S Sbjct: 131 ARLLDVPFTITDATTLTEAGYVGEDVENIILRLLQAADNDVEKAQRGIVFIDEIDKIS 188 >gi|291242207|ref|XP_002740980.1| PREDICTED: valosin-containing protein-like [Saccoglossus kowalevskii] Length = 809 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|237725806|ref|ZP_04556287.1| ATP-dependent Clp protease [Bacteroides sp. D4] gi|229435614|gb|EEO45691.1| ATP-dependent Clp protease [Bacteroides dorei 5_1_36/D4] Length = 745 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69 +++A + L R + GQ EA + ++ AKA + L +LFVGP G+GKT Sbjct: 438 EDNATLETLHERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497 Query: 70 LAQVVARELGV 80 +A+V+A ELG+ Sbjct: 498 VAKVLASELGI 508 >gi|221481015|gb|EEE19427.1| peroxisomal-type ATPase, putative [Toxoplasma gondii GT1] Length = 719 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E GVNF S GP Sbjct: 472 ILLFGPPGTGKTLLAKAVATECGVNFISVKGP 503 >gi|166362932|ref|YP_001655205.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166085305|dbj|BAG00013.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 654 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 49/108 (45%), Gaps = 19/108 (17%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVA 75 P T + G EA + LK +E K AE + VL VGPPG GKT LA+ VA Sbjct: 200 PITFSDVAGAEEAKTELKEIVEFLK-DAERFNKIGARIPKGVLLVGPPGTGKTLLAKAVA 258 Query: 76 RELGVNFRSTS---------GPVIAKAGDLAALLTNLEDRDVLFIDEI 114 E GV F S S G A+ DL A ++FIDE+ Sbjct: 259 GEAGVTFFSISASEFVELFVGTGAARVRDLFAQAKK-NAPSIIFIDEL 305 >gi|148269554|ref|YP_001244014.1| recombination factor protein RarA/unknown domain fusion protein [Thermotoga petrophila RKU-1] gi|147735098|gb|ABQ46438.1| Appr-1-p processing domain protein [Thermotoga petrophila RKU-1] Length = 599 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 81/207 (39%), Gaps = 30/207 (14%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79 LLRP+ E+F GQ + + K +L+ GPPG GKT++ ++ R Sbjct: 11 LLRPKDFEDFVGQDHIFGDKGILRRTLKT-GNMFSSILY-GPPGSGKTSVFSLLKRYFNG 68 Query: 80 --VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133 V ST V I L + +LF+DEIHRL+ + +L +E D Sbjct: 69 EVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLVSHVERGDIV 128 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L E PS V LSR + L L D EDL I++ Sbjct: 129 LVATTTENPSFAIVPALLSRCRI--------LYFKKLSD-------------EDLMKILK 167 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR 220 + ++ L + + A I S G R Sbjct: 168 KATRVLKLDLEETAEKAIVKHSEGDAR 194 >gi|297621660|ref|YP_003709797.1| Lon ATP-dependent protease [Waddlia chondrophila WSU 86-1044] gi|297376961|gb|ADI38791.1| Lon ATP-dependent protease [Waddlia chondrophila WSU 86-1044] Length = 830 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 71/303 (23%), Positives = 123/303 (40%), Gaps = 63/303 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 + VGPPG+GKT++ + +AR L F S + A G + L Sbjct: 385 ICIVGPPGVGKTSVGKSIARALNRKFYRFSVGGMRDEAEIKGHRRTYIGAMPGKMVQALK 444 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + + V+ +DE+ ++ + E+L P LD + V+ +LS Sbjct: 445 YCKTMNPVIMLDEVDKIGNSYQGDPASALLEVLDPEQNKDFLDHYL-------DVRCDLS 497 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAVTDEA 207 I + + PL+DR I +RL+ Y +E+ K ++ R KL GL + + Sbjct: 498 DVLFIVTANVLDTIPEPLKDRMDI-LRLSGYIMEEKIEIANKYLIPRNRKLIGLKAKEIS 556 Query: 208 ACEIAMRS--RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265 + A+R G R AG VR F K I R++A L + ++ +++ Sbjct: 557 FTKPAIRQIIEGYAREAG-----VRSFEN--QIKKIMRKVA----LEIVKERAEWEK--- 602 Query: 266 RYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325 ++ G + E L P+ + L +P I + F ++ P G + +AW Sbjct: 603 ------KKHKKGMELPAE---KRLITPKTVEKYLGKPVFISEMFYKKNPIG-VCTGLAWT 652 Query: 326 HLG 328 LG Sbjct: 653 ALG 655 >gi|296131604|ref|YP_003638851.1| ATPase associated with various cellular activities AAA_5 [Thermincola sp. JR] gi|296030182|gb|ADG80950.1| ATPase associated with various cellular activities AAA_5 [Thermincola potens JR] Length = 316 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 44/224 (19%) Query: 48 KARAEALD---HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA------ 98 KA A+D H+L GPPG K+T+ + +ARE + F G + G L Sbjct: 20 KAILSAIDAGKHILLEGPPGTSKSTILRNIAREAKMPFYIIEGNIDLTPGKLVGHFNPAK 79 Query: 99 ---------------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143 L +E+ +L+I+E +R+ V +L ME+ +L + P Sbjct: 80 VMADDYRPEYFEKGPLTKAMEEGGILYIEEFNRMPADVSNVLITPMEEGELFI-----PR 134 Query: 144 ARSVKINLSRFTLIAA--------TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +VK RFT++A+ T RV + DR + I++ + ++ + IV+R Sbjct: 135 YGTVKA-ADRFTVVASQNPYDDVGTVRV---SRAFMDRICL-IKMEYQPQQEEEIIVKRK 189 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHA 238 T + E A + ++R P I G +R D ++ ++ Sbjct: 190 TGCTDQRII-ELAVKFVRKTREHPDIKMGASVRAAIDIVDIFNS 232 >gi|300770297|ref|ZP_07080176.1| ATPase [Sphingobacterium spiritivorum ATCC 33861] gi|300762773|gb|EFK59590.1| ATPase [Sphingobacterium spiritivorum ATCC 33861] Length = 1612 Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 33/184 (17%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------------KAGDLA 97 R + +L + PPG GKTTL + +A+ LG++F +GP I +G+ Sbjct: 1249 RTARMGMLLLISPPGYGKTTLMEYLAKILGLHFVKVNGPTIGHSITSIDPVEAKTSGERE 1308 Query: 98 ALLT-----NLEDRDVLFIDEIHRLSI-IVEEILYPAMEDFQLD-LMVGEGPSARSVKIN 150 L + D +L++D+I LS +++ + A ++D + GE +++ + Sbjct: 1309 ELKKINLSFEMADNVMLYLDDIQHLSAEFLQKFISLADGQRKIDGIFDGE---SKTYDLR 1365 Query: 151 LSRFTLIAATTRVGLLTNPLQD---RFGIPIRL-NFYEIEDLKTIVQRGAKLTGLAVTDE 206 RF ++ A NP + +F IP L N ++ +L ++ A L L++ + Sbjct: 1366 GKRFCIVMA-------GNPYTESGSKFQIPDMLANRADVYNLGDVIGDTAHLFNLSLIEN 1418 Query: 207 AACE 210 AA E Sbjct: 1419 AAIE 1422 >gi|237711935|ref|ZP_04542416.1| ATP-dependent Clp protease [Bacteroides sp. 9_1_42FAA] gi|229454630|gb|EEO60351.1| ATP-dependent Clp protease [Bacteroides sp. 9_1_42FAA] Length = 745 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69 +++A + L R + GQ EA + ++ AKA + L +LFVGP G+GKT Sbjct: 438 EDNATLETLHERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497 Query: 70 LAQVVARELGV 80 +A+V+A ELG+ Sbjct: 498 VAKVLASELGI 508 >gi|221107178|ref|XP_002169843.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 572 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ +A E G+NF S GP Sbjct: 290 ILLAGPPGCGKTLLAKAIANEAGINFISVKGP 321 >gi|148228726|ref|NP_001084621.1| chromosome transmission fidelity protein 18 homolog [Xenopus laevis] gi|82237184|sp|Q6NU40|CTF18_XENLA RecName: Full=Chromosome transmission fidelity protein 18 homolog gi|46249842|gb|AAH68761.1| Chtf18 protein [Xenopus laevis] Length = 1000 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 51/118 (43%), Gaps = 28/118 (23%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA-LDH--------VLFVGPPGLGKTTL 70 +++ PR F Q E S K + + EA LDH L GPPGLGKTTL Sbjct: 347 AIVDPRA-NHFKNQKEQQSKFKTKAQITEEILEAELDHHNRPKNKVSLLCGPPGLGKTTL 405 Query: 71 AQVVARELGVN--------------FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 A V+AR G N FR+ I A + ++L E + L IDEI Sbjct: 406 AHVIARHAGYNVVEMNASDDRSPEAFRTR----IEAATQMKSVLGVDERPNCLIIDEI 459 >gi|82596542|ref|XP_726304.1| cell division cycle ATPase [Plasmodium yoelii yoelii str. 17XNL] gi|23481659|gb|EAA17869.1| putative cell division cycle ATPase [Plasmodium yoelii yoelii] Length = 1078 Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E NF S GP + G+ A + +L D+ + Sbjct: 819 ILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAASPCI 878 Query: 109 LFIDEIHRLS 118 +F DEI L+ Sbjct: 879 IFFDEIDSLA 888 >gi|312216774|emb|CBX96724.1| similar to cell division control protein 48 [Leptosphaeria maculans] Length = 830 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 543 VLFYGPPGTGKTLLAKAVANECAANFISIKGP 574 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 269 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 328 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 329 IFIDEIDSIA 338 >gi|289191993|ref|YP_003457934.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22] gi|288938443|gb|ADC69198.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22] Length = 371 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 12/100 (12%) Query: 27 LEEFTGQVEA---CSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 E GQ EA C + ++E K E A +VLF GPPG GKT +A+ +A E +F Sbjct: 123 FSEIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSF 182 Query: 83 RSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEI 114 P + GD + ++ L R ++FIDE+ Sbjct: 183 ILVKAPELIGEHVGDASKMIRELYQRASENAPCIVFIDEL 222 >gi|209865725|gb|ACC66148.3| cell division cycle protein [Dimocarpus longan] gi|221327637|gb|ACM17483.1| cell division cycle protein [Dimocarpus longan] Length = 805 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|188588880|ref|YP_001920497.1| ATPase, AAA family [Clostridium botulinum E3 str. Alaska E43] gi|251778335|ref|ZP_04821255.1| ATPase, AAA family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499161|gb|ACD52297.1| ATPase, AAA family [Clostridium botulinum E3 str. Alaska E43] gi|243082650|gb|EES48540.1| ATPase, AAA family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 103 Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 8/99 (8%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP +E+F GQ K++ + + +F GPPG GKTTLA ++A+ + Sbjct: 7 LMRPSKIEDFVGQRHILGKNTPLYNLIKSKK--ICNCIFYGPPGTGKTTLANIMAKYVDK 64 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDR-----DVLFIDEI 114 F + A D+ + + L++ VL+IDE+ Sbjct: 65 KFYKLNA-TTASVKDIQNITSELDNLLNYAGVVLYIDEL 102 >gi|189199666|ref|XP_001936170.1| cell division cycle protein 48 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983269|gb|EDU48757.1| cell division cycle protein 48 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 818 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 531 VLFYGPPGTGKTLLAKAVANECAANFISIKGP 562 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 257 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 317 IFIDEIDSIA 326 >gi|251794362|ref|YP_003009093.1| ATPase AAA [Paenibacillus sp. JDR-2] gi|247541988|gb|ACS99006.1| AAA ATPase central domain protein [Paenibacillus sp. JDR-2] Length = 594 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 19/108 (17%) Query: 26 TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T +++ G E N K + + K EA+ +L GPPG GK+ LAQV+A E Sbjct: 81 TWDDYRGNPEIVENAKRIVSLLRGVKDFKKMGGEAIRGLLLCGPPGTGKSYLAQVIANEA 140 Query: 79 GVNFRSTSGPVIAK----AGDL--------AALLTNLEDRDVLFIDEI 114 V F S P G+L A L + ++FIDE+ Sbjct: 141 QVPFAYASAPSFQNMFFGVGNLRVMRIYKKARKLARMYGACIIFIDEV 188 >gi|156370042|ref|XP_001628281.1| predicted protein [Nematostella vectensis] gi|156215254|gb|EDO36218.1| predicted protein [Nematostella vectensis] Length = 807 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 509 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARSAAPCV 568 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 569 LFFDELDSIA 578 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 236 ILLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 295 Query: 109 LFIDEI 114 +FIDEI Sbjct: 296 IFIDEI 301 >gi|146324243|ref|XP_753175.2| replication factor C subunit [Aspergillus fumigatus Af293] gi|129557997|gb|EAL91137.2| replication factor C subunit [Aspergillus fumigatus Af293] gi|159127094|gb|EDP52210.1| replication factor C subunit [Aspergillus fumigatus A1163] Length = 389 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ GQ E S LK F+ K H+LF GPPG GKT+ +AR+L Sbjct: 26 RPATLKQVVGQDETLSVLKSFMIHRK-----FPHLLFHGPPGTGKTSTILALARQL 76 >gi|324506159|gb|ADY42638.1| Nuclear valosin-containing protein-like protein [Ascaris suum] Length = 812 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ +A E G+NF S GP Sbjct: 576 ILLCGPPGCGKTLLAKAIANETGMNFISVKGP 607 >gi|170595872|ref|XP_001902553.1| transitional endoplasmic reticulum ATPase TER94 [Brugia malayi] gi|158589713|gb|EDP28598.1| transitional endoplasmic reticulum ATPase TER94, putative [Brugia malayi] Length = 351 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 59 VLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 118 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 119 LFFDELDSVA 128 >gi|153004960|ref|YP_001379285.1| ATP-dependent protease La [Anaeromyxobacter sp. Fw109-5] gi|152028533|gb|ABS26301.1| ATP-dependent protease La [Anaeromyxobacter sp. Fw109-5] Length = 828 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 92/228 (40%), Gaps = 60/228 (26%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L Q +AR +G F R + G V +A G + L R Sbjct: 375 LCFVGPPGVGKTSLGQSIARSIGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRIIQSMK 434 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 V+ +DEI +L S + E+L P + D LDL Sbjct: 435 KAGTVNPVMMLDEIDKLGADFRGDPSAALLEVLDPEQNHSFSDHYLDLAY---------- 484 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ----------RGAKL 198 +LS+ I + + PL+DR I + L Y E+ I Q G Sbjct: 485 -DLSKVMFIGTANLLDPIPGPLKDRMEI-LELPGYTFEEKVHIAQNHLIPKQLREHGLSA 542 Query: 199 TGLAVTDEAACEIAMRSRGTPRIAG--RLLRRVRDFA-----EVAHAK 239 +A+T++A +I M R AG L RR+ D EVA K Sbjct: 543 DAIAITEKALIKIIM---AYTREAGVRNLERRIADVCRAVAVEVASGK 587 >gi|297466719|ref|XP_002704662.1| PREDICTED: NVL protein-like [Bos taurus] Length = 260 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 32 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 63 >gi|268530368|ref|XP_002630310.1| Hypothetical protein CBG00746 [Caenorhabditis briggsae] gi|187038824|emb|CAP21912.1| hypothetical protein CBG_00746 [Caenorhabditis briggsae AF16] Length = 811 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 578 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 579 LFFDELDSIA 588 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108 +L GPPG GKT +A+ VA E G F +GP I +L E + Sbjct: 246 ILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAI 305 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 306 LFIDEIDAIA 315 >gi|255070161|ref|XP_002507162.1| cell division cycle protein 48-like protein, expessed [Micromonas sp. RCC299] gi|226522437|gb|ACO68420.1| cell division cycle protein 48-like protein, expessed [Micromonas sp. RCC299] Length = 821 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|221506989|gb|EEE32606.1| peroxisomal-type ATPase, putative [Toxoplasma gondii VEG] Length = 719 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E GVNF S GP Sbjct: 472 ILLFGPPGTGKTLLAKAVATECGVNFISVKGP 503 >gi|269861299|ref|XP_002650361.1| replication factor C subunit [Enterocytozoon bieneusi H348] gi|220066192|gb|EED43686.1| replication factor C subunit [Enterocytozoon bieneusi H348] Length = 298 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--V 80 RP+TL++ G +V I+ K H+LF GPPG GKTT++++++++ + Sbjct: 10 RPKTLDDVIGN-------EVIIKLIKNLDNTFPHLLFCGPPGTGKTTVSKILSQKFSKVL 62 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFI-DEIHRLSIIVEEILYPAME 130 ++ I + T L ++ L I DE L+++ ++ L ME Sbjct: 63 ELNASDERGIDTIRNRIKTFTQLAEQSKLVIMDECDSLTLVAQQALRRLME 113 >gi|212691639|ref|ZP_03299767.1| hypothetical protein BACDOR_01134 [Bacteroides dorei DSM 17855] gi|212665828|gb|EEB26400.1| hypothetical protein BACDOR_01134 [Bacteroides dorei DSM 17855] Length = 745 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69 +++A + L R + GQ EA + ++ AKA + L +LFVGP G+GKT Sbjct: 438 EDNATLETLHERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497 Query: 70 LAQVVARELGV 80 +A+V+A ELG+ Sbjct: 498 VAKVLASELGI 508 >gi|162148061|ref|YP_001602522.1| recombination factor protein RarA [Gluconacetobacter diazotrophicus PAl 5] gi|209542678|ref|YP_002274907.1| recombination factor protein RarA [Gluconacetobacter diazotrophicus PAl 5] gi|161786638|emb|CAP56221.1| ATPase, AAA family protein [Gluconacetobacter diazotrophicus PAl 5] gi|209530355|gb|ACI50292.1| AAA ATPase central domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 473 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 17/147 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP +L++ GQ + L+ ++ +L ++ G PG+GKTT+A+++A Sbjct: 51 LRPESLDDVVGQDHLLGPDGALRRMLDRG-----SLASLILWGGPGVGKTTIARLLADAA 105 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 G+ F S + +A D A L +LF+DEIHR + ++ P +ED Sbjct: 106 GLRFVQLSAVFSGVADLKRAFDDARRLGEAGQGTLLFVDEIHRFNRAQQDGFLPVVEDGT 165 Query: 134 LDLMVGEGPSARSVKIN---LSRFTLI 157 + ++VG S +N LSR ++ Sbjct: 166 V-VLVGATTENPSFALNGALLSRCQVM 191 >gi|17229735|ref|NP_486283.1| hypothetical protein all2243 [Nostoc sp. PCC 7120] gi|17131334|dbj|BAB73942.1| all2243 [Nostoc sp. PCC 7120] Length = 613 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 8/80 (10%) Query: 47 AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLE 104 AK E VL VGPPG GKT A+ +A ELGVN+ + GP VI+K G+ L + Sbjct: 120 AKLGLEPTRGVLLVGPPGTGKTLTARGLAEELGVNYIALVGPEVISKYYGEAEQRLRGIF 179 Query: 105 DRD------VLFIDEIHRLS 118 ++ ++FIDEI L+ Sbjct: 180 EKAAKNAPCIIFIDEIDSLA 199 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101 + +A A +L GPPG GKT LA+ VA + NF +GP V A + L Sbjct: 387 QTKALAPKGILLWGPPGTGKTLLAKAVASQARANFIGVNGPELLSRWVGASEQAVRELFA 446 Query: 102 NLEDRD--VLFIDEIHRLS 118 + V+FIDEI L+ Sbjct: 447 KARQAEPCVVFIDEIDTLA 465 >gi|326433452|gb|EGD79022.1| cell division cycle protein 48 [Salpingoeca sp. ATCC 50818] Length = 805 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT LA+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILLYGPPGTGKTLLARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDAIA 307 >gi|330924950|ref|XP_003300847.1| hypothetical protein PTT_12208 [Pyrenophora teres f. teres 0-1] gi|311324808|gb|EFQ91051.1| hypothetical protein PTT_12208 [Pyrenophora teres f. teres 0-1] Length = 819 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 532 VLFYGPPGTGKTLLAKAVANECAANFISIKGP 563 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 258 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 317 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 318 IFIDEIDSIA 327 >gi|307183660|gb|EFN70363.1| ATPase WRNIP1 [Camponotus floridanus] Length = 554 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 15/149 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------ 75 +RP +L F GQ + E + + + +++ GPPG GKT+LA V+A Sbjct: 116 MRPISLLNFVGQKHILGPRTMLSELLQKKE--IPNMILWGPPGCGKTSLANVIAHMCKND 173 Query: 76 --RELGVNFRSTSGPVIAKAGDLAALLTN---LEDRDVLFIDEIHRLSIIVEEILYPAME 130 R+L S + + + ++ ++ N + ++F+DEIHR + +++ P +E Sbjct: 174 TSRKLRYVKLSAAMAGVQEVKEVISVAANHAKFAQQTIVFMDEIHRFNKTQQDVFLPHVE 233 Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157 + L+ E PS LSR +I Sbjct: 234 SGTITLIGATTENPSFSLNSALLSRCRVI 262 >gi|158298980|ref|XP_319111.4| AGAP009973-PA [Anopheles gambiae str. PEST] gi|157014148|gb|EAA13918.4| AGAP009973-PA [Anopheles gambiae str. PEST] Length = 570 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 54/118 (45%), Gaps = 16/118 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA LK +E K + + VL VGPPG GKT LA+ VA E Sbjct: 127 TFEDVKGCDEAKQELKEVVEFLKNPGKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 186 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSII-VEEILYP 127 GV F +GP V A + L ++R V+FIDEI + +L+P Sbjct: 187 GVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFIDEIDSVGAKRTNSVLHP 244 >gi|75906293|ref|YP_320589.1| AAA ATPase [Anabaena variabilis ATCC 29413] gi|75700018|gb|ABA19694.1| AAA ATPase, central region [Anabaena variabilis ATCC 29413] Length = 613 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 8/80 (10%) Query: 47 AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLE 104 AK E VL VGPPG GKT A+ +A ELGVN+ + GP VI+K G+ L + Sbjct: 120 AKLGLEPTRGVLLVGPPGTGKTLTARGLAEELGVNYIALVGPEVISKYYGEAEQRLRGIF 179 Query: 105 DRD------VLFIDEIHRLS 118 ++ ++FIDEI L+ Sbjct: 180 EKAAKNAPCIIFIDEIDSLA 199 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101 + +A A +L GPPG GKT LA+ VA + NF +GP V A + L Sbjct: 387 QTKALAPKGILLWGPPGTGKTLLAKAVASQARANFIGVNGPELLSRWVGASEQAVRELFA 446 Query: 102 NLEDRD--VLFIDEIHRLS 118 + V+FIDEI L+ Sbjct: 447 KARQAEPCVVFIDEIDTLA 465 >gi|327262665|ref|XP_003216144.1| PREDICTED: nuclear valosin-containing protein-like [Anolis carolinensis] Length = 844 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 606 ILLAGPPGCGKTLLAKAVANESGLNFISVKGP 637 >gi|301774052|ref|XP_002922441.1| PREDICTED: nuclear valosin-containing protein-like [Ailuropoda melanoleuca] Length = 849 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 611 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 642 >gi|291543201|emb|CBL16310.1| Recombination protein MgsA [Ruminococcus sp. 18P13] Length = 420 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 24/150 (16%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+E GQ + L+ +E + + +++F GP G+GKTTLA+++A Sbjct: 8 IRPTTLDEIVGQPHLLAPGKPLRRILERGQ-----VTNMIFYGPSGVGKTTLARIIASNS 62 Query: 79 GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 + +G +IA+ G LA + +L++DEI L+ ++ L + Sbjct: 63 NMTLYKLNGTSASVGDIKEIIAQTGTLAGC-----NGILLYLDEIQYLNKKQQQSLLEYI 117 Query: 130 EDFQLDLMVG--EGPSARSVKINLSRFTLI 157 E+ L L+ E P +SR T+ Sbjct: 118 ENGSLTLIASTTENPYFAVFNAIISRSTVF 147 >gi|256820706|ref|YP_003141985.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga ochracea DSM 7271] gi|256582289|gb|ACU93424.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga ochracea DSM 7271] Length = 569 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 108/257 (42%), Gaps = 37/257 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP++ + GQ + L IE A+AL LF GP G+GKTT A+++A+++ Sbjct: 12 RPQSFRDVVGQQAITNTLLNAIENNHL-AQAL---LFTGPRGVGKTTCARILAKKIN--- 64 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------------SIIVEEILYPA 128 TSG + D A + L+ +D+I +L I++E+ + Sbjct: 65 EQTSG--VEDENDFAFNVFELDAASNNSVDDIRKLIEQVRIPPQVGKYKVYIIDEVHMLS 122 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 F L E P ++ I ATT + + R I I D+ Sbjct: 123 TAAFNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI-FDFKRITINDI 173 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + ++ A+ G+ DEA IA ++ G R A + RV F+ + ITR+ A + Sbjct: 174 REYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFS----GEKITRQ-ATS 228 Query: 249 ALLRLAIDKMGFDQLDL 265 +L + ++ F DL Sbjct: 229 EILNVLDYEVYFKVTDL 245 >gi|552189|gb|AAA29520.1| cell division cycle ATPase [Plasmodium falciparum] Length = 709 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E NF S GP + G+ A + +L D+ + Sbjct: 593 ILLYGPPGCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCI 652 Query: 109 LFIDEIHRLS 118 +F DEI L+ Sbjct: 653 IFFDEIDSLA 662 >gi|291568075|dbj|BAI90347.1| cell division control protein CDC48 homolog [Arthrospira platensis NIES-39] Length = 611 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD-- 107 E VL VGPPG GKT A+ +A ELGVN+ + GP VI K G+ L + ++ Sbjct: 123 EPTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAK 182 Query: 108 ----VLFIDEIHRLS 118 ++FIDEI L+ Sbjct: 183 NAPCIIFIDEIDSLA 197 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101 + +A A +L GPPG GKT LA+ VA + NF +GP V A + L Sbjct: 385 ETKARAPKGILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRELFA 444 Query: 102 NLEDRD--VLFIDEIHRLS 118 D V+FIDE+ L+ Sbjct: 445 KARQADPCVIFIDELDTLA 463 >gi|170592277|ref|XP_001900895.1| ATPase, AAA family protein [Brugia malayi] gi|158591590|gb|EDP30195.1| ATPase, AAA family protein [Brugia malayi] Length = 739 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 500 ILLCGPPGCGKTLLAKAVANESGMNFISIKGP 531 >gi|159467975|ref|XP_001692158.1| hypothetical protein CHLREDRAFT_145703 [Chlamydomonas reinhardtii] gi|158278344|gb|EDP04108.1| predicted protein [Chlamydomonas reinhardtii] Length = 2689 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 13/96 (13%) Query: 35 EACSNLKVFIEAAKARAEALD----HVLFVGPPGLGKTTLAQVVA---RELGV----NFR 83 +A +L +E K R L +V F+G PG GKTT+A++ A +ELGV F Sbjct: 1703 KAMFDLAAAVELDKERGHPLSSKQYNVRFLGNPGTGKTTVARMYAELLKELGVISGAEFV 1762 Query: 84 STSGPVIAKAG--DLAALLTNLEDRDVLFIDEIHRL 117 TSG +A G L L LE +LF+DE ++L Sbjct: 1763 ETSGAELASGGTSKLQEHLKKLEGGGLLFLDEAYQL 1798 >gi|281338564|gb|EFB14148.1| hypothetical protein PANDA_011417 [Ailuropoda melanoleuca] Length = 719 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 574 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 605 >gi|254585629|ref|XP_002498382.1| ZYRO0G08910p [Zygosaccharomyces rouxii] gi|238941276|emb|CAR29449.1| ZYRO0G08910p [Zygosaccharomyces rouxii] Length = 1121 Score = 44.3 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 67/277 (24%), Positives = 110/277 (39%), Gaps = 48/277 (17%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S+E I+ + E+ G + + FI K + +L FVGPPG+GKT++ Sbjct: 568 SKEQYSINSAKKTLDEDHYGMNDVKDRILEFIAVGKLLGKVDGKILCFVGPPGVGKTSIG 627 Query: 72 QVVARELGVNFRSTSGPVIAKAGDLA----------------ALLTNLEDRDVLFIDEIH 115 + +AR L F S S + ++ AL ++ IDEI Sbjct: 628 KSIARSLNRKFFSFSVGGLTDVAEIKGHRRTYIGALPGRVIQALKKCQTQNPLILIDEID 687 Query: 116 RL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P LD + + I+LSR + + + Sbjct: 688 KIGHAGIHGDPSAALLEVLDPEQNSNFLD-------NYLDISIDLSRVLFVCTANTLDTI 740 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR-----GAKLTGLAVTDEAACEIAMRS--RGTP 219 PL DR + I L Y ED I ++ + GL + E A+RS R Sbjct: 741 PRPLLDRMEV-IELTGYVAEDKVKIAEQYLSPSAKRAAGLENANVDLAEDAIRSLMRKYC 799 Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256 R +G VR+ + H + I R+ A + +L++D Sbjct: 800 RESG-----VRNLKK--HIEKIYRKAALNVVKQLSMD 829 >gi|167535575|ref|XP_001749461.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772089|gb|EDQ85746.1| predicted protein [Monosiga brevicollis MX1] Length = 801 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 509 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 568 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 569 LFFDELDSIA 578 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 236 ILLYGPPGTGKTMIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 295 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 296 IFIDEIDAIA 305 >gi|156086698|ref|XP_001610758.1| cell division control protein 48 [Babesia bovis T2Bo] gi|154798011|gb|EDO07190.1| cell division control protein 48, putative [Babesia bovis] Length = 804 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 524 VLFYGPPGCGKTLLAKAVASECSANFISIKGP 555 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ + L + Sbjct: 251 VLLYGPPGSGKTLIARAVANETGAYFFLINGPEVMSKMAGEAESNLRRAFAEAEKNAPAI 310 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 311 IFIDEVDSIA 320 >gi|326492542|dbj|BAK02054.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 593 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 302 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCV 361 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 362 LFFDELDSIA 371 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 29 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 88 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 89 IFIDEIDSIA 98 >gi|302686514|ref|XP_003032937.1| hypothetical protein SCHCODRAFT_85085 [Schizophyllum commune H4-8] gi|300106631|gb|EFI98034.1| hypothetical protein SCHCODRAFT_85085 [Schizophyllum commune H4-8] Length = 814 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 518 VLFYGPPGTGKTMLAKAIANECNANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 577 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 578 MFFDELDSIA 587 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|112818458|gb|AAI22551.1| VCP protein [Homo sapiens] Length = 475 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 183 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 242 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 243 LFFDELDSIA 252 >gi|48257098|gb|AAH07562.2| VCP protein [Homo sapiens] Length = 644 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 352 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 411 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 412 LFFDELDSIA 421 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 79 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 138 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 139 IFIDELDAIA 148 >gi|291525136|emb|CBK90723.1| amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) [Eubacterium rectale DSM 17629] gi|291529375|emb|CBK94961.1| amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) [Eubacterium rectale M104/1] Length = 261 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 58/248 (23%), Positives = 96/248 (38%), Gaps = 36/248 (14%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +++L R +E+ G+ ++ +E A A +G G GKTTL + + Sbjct: 1 MAILEVRNIEKHFGRTNVLKDVSFSMEEGNALA-------IIGSSGSGKTTLLRCL---- 49 Query: 79 GVNF--RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI----LYPAMEDF 132 NF R SG +I L +D+D + ++ ++ Y A+E+ Sbjct: 50 --NFLERPDSGQIIVNGETLFDASEAGKDKDAELRKKRLHFGMVFQQFNLFPQYTALENV 107 Query: 133 QLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 L L+ E P + K A TR+ L DR G+ R+N Y + Sbjct: 108 TLAERLLAQETPEFKKDKK--------AILTRIDEHGKELLDRMGLAERMNHYPHQLSGG 159 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-------VAHAKTITR 243 QR A LA+ + C S P + G +L+ +R A+ V H R Sbjct: 160 QQQRVAIARALALKPDILCFDEPTSALDPELTGEVLKVIRSLAQQNTTMIIVTHEMAFAR 219 Query: 244 EIADAALL 251 ++AD + Sbjct: 220 DVADQVIF 227 >gi|303273578|ref|XP_003056149.1| cell division cycle protein 48 [Micromonas pusilla CCMP1545] gi|226462233|gb|EEH59525.1| cell division cycle protein 48 [Micromonas pusilla CCMP1545] Length = 823 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 578 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 579 LFFDELDSIA 588 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 246 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 305 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 306 IFIDEIDSIA 315 >gi|268532972|ref|XP_002631614.1| C. briggsae CBR-MAC-1 protein [Caenorhabditis briggsae] gi|187023067|emb|CAP37746.1| CBR-MAC-1 protein [Caenorhabditis briggsae AF16] Length = 826 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 584 ILLCGPPGCGKTLLAKAVANETGMNFISVKGP 615 >gi|325336547|gb|ADZ12821.1| DNA polymerase III, gamma/tau subunits [Riemerella anatipestifer RA-GD] Length = 347 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 23/221 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ + GQ S++ +E A A + +LF GP G+GKTT A+++AR++ Sbjct: 12 RPQEFDTVVGQ----SHITDTLEHAIAENQLAQALLFCGPRGVGKTTCARILARKINEKD 67 Query: 83 RSTSG--------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-IVEEILYPAMEDFQ 133 +TS + A + + + L D+ V + ++ + + I++E+ + + F Sbjct: 68 GATSEDGFSYNIFELDAASNNSVDDIRELTDQ-VRYAPQVGKYKVYIIDEVHMLSSQAFN 126 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 L E P A ++ I ATT + + R I IED++ ++ Sbjct: 127 AFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI-YDFKRITIEDIQAHLR 177 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 + A G++ D+A IA ++ G R A + R+ F + Sbjct: 178 KIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFTQ 218 >gi|301091915|ref|XP_002896132.1| cell division control protein 48 [Phytophthora infestans T30-4] gi|262094952|gb|EEY53004.1| cell division control protein 48 [Phytophthora infestans T30-4] Length = 804 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ A + + D+ V Sbjct: 509 VLFYGPPGCGKTLLAKAVANECQANFISIKGPELLTMWFGESEANVREVFDKARGAAPCV 568 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 569 LFFDELDSIA 578 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 236 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 295 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 296 IFIDEIDSIA 305 >gi|237739475|ref|ZP_04569956.1| DNA polymerase III gamma and tau [Fusobacterium sp. 2_1_31] gi|229423083|gb|EEO38130.1| DNA polymerase III gamma and tau [Fusobacterium sp. 2_1_31] Length = 485 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 32/227 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + E +G+ E +LK+ ++ K+ A A LF GP G+GKTT+A+++A+ GVN Sbjct: 10 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63 Query: 83 RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + G + + A+ L ++ IDEI L E+I Y +E + Sbjct: 64 LNLGEDGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120 Query: 134 LDLMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF-- 182 ++ E N S I ATT + + + R R +F Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISRCQ---RYDFKA 177 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 +IED+K+ ++ K L+++DE I S G+ R + +L R+ Sbjct: 178 LDIEDMKSGLKHILKEENLSMSDEVYPLIYENSSGSMRDSISILERL 224 >gi|118121359|ref|XP_428317.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 546 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 254 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 313 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 314 LFFDELDSIA 323 >gi|17531535|ref|NP_496273.1| Cell Division Cycle related family member (cdc-48.1) [Caenorhabditis elegans] gi|1729896|sp|P54811|TERA1_CAEEL RecName: Full=Transitional endoplasmic reticulum ATPase homolog 1; AltName: Full=Cell division cycle-related protein 48.1; AltName: Full=p97/CDC48 homolog 1 gi|3874005|emb|CAA90050.1| C. elegans protein C06A1.1, confirmed by transcript evidence [Caenorhabditis elegans] Length = 809 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 579 Query: 109 LFIDEIHRL 117 LF DE+ + Sbjct: 580 LFFDELDSI 588 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108 +L GPPG GKT +A+ VA E G F +GP V++K +L E + Sbjct: 247 ILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAI 306 Query: 109 LFIDEI 114 LFIDEI Sbjct: 307 LFIDEI 312 >gi|16079872|ref|NP_390698.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis subsp. subtilis str. 168] gi|221310760|ref|ZP_03592607.1| class III heat-shock ATP-dependent Lon protease [Bacillus subtilis subsp. subtilis str. 168] gi|221315085|ref|ZP_03596890.1| class III heat-shock ATP-dependent Lon protease [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320004|ref|ZP_03601298.1| class III heat-shock ATP-dependent Lon protease [Bacillus subtilis subsp. subtilis str. JH642] gi|221324286|ref|ZP_03605580.1| class III heat-shock ATP-dependent Lon protease [Bacillus subtilis subsp. subtilis str. SMY] gi|321312352|ref|YP_004204639.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis BSn5] gi|585415|sp|P37945|LON1_BACSU RecName: Full=Lon protease 1; AltName: Full=ATP-dependent protease La 1 gi|496557|emb|CAA53984.1| protease La [Bacillus subtilis subsp. subtilis str. 168] gi|1770078|emb|CAA99540.1| ATP-dependent Lon protease [Bacillus subtilis] gi|2635285|emb|CAB14780.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis subsp. subtilis str. 168] gi|320018626|gb|ADV93612.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis BSn5] Length = 774 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 58/197 (29%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPV-------IA 91 + GPPG+GKT+LA+ +A+ LG F R+ G + + Sbjct: 350 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 409 Query: 92 KAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPS 143 KAG L V +DEI ++ S + E+L P D + E Sbjct: 410 KAGKLNP---------VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEE--- 457 Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQR 194 +LS+ IA + + PL+DR I + EIE L K I + Sbjct: 458 ----TFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEH 513 Query: 195 GAKLTGLAVTDEAACEI 211 G K + L + D+A +I Sbjct: 514 GLKKSNLQLRDQAILDI 530 >gi|322822657|gb|EFZ28645.1| RuvB-like DNA helicase, putative [Trypanosoma cruzi] Length = 459 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQV+A + +E +++ A +LF GPPG GKT LA +A+ELG Sbjct: 42 FVGQVKAREAAGIVVELTRSKKMAGRALLFAGPPGTGKTALALGIAKELG 91 >gi|307243655|ref|ZP_07525796.1| recombination factor protein RarA [Peptostreptococcus stomatis DSM 17678] gi|306492965|gb|EFM64977.1| recombination factor protein RarA [Peptostreptococcus stomatis DSM 17678] Length = 423 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 14/140 (10%) Query: 23 RPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP +E+ GQ L IE A +++F GPPG+GKTT+A+++A Sbjct: 8 RPTRIEDVVGQKHIIGRGRLLNNMIEKA-----YFPNMIFFGPPGVGKTTVAEIIAARAD 62 Query: 80 VNFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLD 135 F + S I + A + NL+ + +L+IDEI + ++ + +E+ Q+ Sbjct: 63 KKFFKINASNSSIDDIKRVIASIGNLDAQKGILLYIDEIQSFNKKQQQSILEFIENGQIS 122 Query: 136 LMVG--EGPSARSVKINLSR 153 L+ E P K LSR Sbjct: 123 LIASTTENPYHYVYKAILSR 142 >gi|258511533|ref|YP_003184967.1| AAA ATPase central domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478259|gb|ACV58578.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 329 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 37/181 (20%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-AKAGDLAALL---TNLEDRD---- 107 H++F G PG GKTT+A+++AR G ++ + DL T + R+ Sbjct: 105 HMIFYGNPGTGKTTVARILARMFHECGLLEKGHLVEVERADLVGEYIGHTAQKTREQIQK 164 Query: 108 ----VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 VLFIDE + L+ E + L AMED + +L+V R ++ LS Sbjct: 165 ALGGVLFIDEAYSLARGGEKDFGREAIDCLVKAMEDHKHELIVILAGYEREMRWFLS--- 221 Query: 156 LIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214 TNP L RF I IR Y ++ L I ++ +T EA E A+R Sbjct: 222 -----------TNPGLPSRFPIQIRFPDYGVDQLVQIAKKTLATRDYRMTAEA--EWALR 268 Query: 215 S 215 S Sbjct: 269 S 269 >gi|225561602|gb|EEH09882.1| cell division control protein [Ajellomyces capsulatus G186AR] Length = 751 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 462 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 493 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 257 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 317 IFIDEIDSIA 326 >gi|209524864|ref|ZP_03273410.1| Vesicle-fusing ATPase [Arthrospira maxima CS-328] gi|209494743|gb|EDZ95052.1| Vesicle-fusing ATPase [Arthrospira maxima CS-328] Length = 610 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD-- 107 E VL VGPPG GKT A+ +A ELGVN+ + GP VI K G+ L + ++ Sbjct: 122 EPTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAK 181 Query: 108 ----VLFIDEIHRLS 118 ++FIDEI L+ Sbjct: 182 NAPCIIFIDEIDSLA 196 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101 + +A A +L GPPG GKT LA+ VA + NF +GP V A + L Sbjct: 384 ETKARAPKGILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRELFA 443 Query: 102 NLEDRD--VLFIDEIHRLS 118 D V+FIDE+ L+ Sbjct: 444 KARQADPCVIFIDELDTLA 462 >gi|153854552|ref|ZP_01995822.1| hypothetical protein DORLON_01817 [Dorea longicatena DSM 13814] gi|149752861|gb|EDM62792.1| hypothetical protein DORLON_01817 [Dorea longicatena DSM 13814] Length = 419 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 28/130 (21%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGP 62 +DI+LL+P ++ F GQ EA L V + R + ++L +GP Sbjct: 61 SDINLLKPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRVMSGKELGVELGKSNILMLGP 120 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------V 108 G GKT LAQ +A+ LGV F + +AG + + N+ D D + Sbjct: 121 TGCGKTLLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEYGI 180 Query: 109 LFIDEIHRLS 118 ++IDEI +++ Sbjct: 181 IYIDEIDKIT 190 >gi|119944996|ref|YP_942676.1| cell division protein CDC48 [Psychromonas ingrahamii 37] gi|119863600|gb|ABM03077.1| cell division control protein 48 ATPase of AAA family CDC48 subfamily [Psychromonas ingrahamii 37] Length = 732 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR--- 106 +A VL GPPG GKT +A+++A E NF S SGP I G+ A L + + Sbjct: 213 DAPKGVLIYGPPGCGKTLIARIIAHETEANFFSVSGPEIIHKFYGESEAHLRKIFEEAGR 272 Query: 107 ---DVLFIDEIHRLS 118 ++FIDEI ++ Sbjct: 273 KGPSIIFIDEIDAIA 287 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG+GKT +A+ VA E GVN S GP + Sbjct: 491 LLLCGPPGVGKTLIAKAVANESGVNVISVKGPAL 524 >gi|87307573|ref|ZP_01089717.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina DSM 3645] gi|87289743|gb|EAQ81633.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina DSM 3645] Length = 618 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP++ EE GQ + LK IE R LF G G+GKT+ A+++A+ L Sbjct: 26 RPQSFEELVGQSQVAQALKNAIE----RGRVGHAYLFTGARGVGKTSSARILAKALNCQR 81 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 ++ P D+ +T ED DVL ID Sbjct: 82 GPSATP--CNECDICRSVTVGEDVDVLEID 109 >gi|291485235|dbj|BAI86310.1| class III heat-shock ATP-dependent Lon protease [Bacillus subtilis subsp. natto BEST195] Length = 774 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 58/197 (29%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPV-------IA 91 + GPPG+GKT+LA+ +A+ LG F R+ G + + Sbjct: 350 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 409 Query: 92 KAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPS 143 KAG L V +DEI ++ S + E+L P D + E Sbjct: 410 KAGKLNP---------VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEE--- 457 Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQR 194 +LS+ IA + + PL+DR I + EIE L K I + Sbjct: 458 ----TFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEH 513 Query: 195 GAKLTGLAVTDEAACEI 211 G K + L + D+A +I Sbjct: 514 GLKKSNLQLRDQAILDI 530 >gi|238924362|ref|YP_002937878.1| putative amino acid ABC transporter, ATP-binding protein [Eubacterium rectale ATCC 33656] gi|238876037|gb|ACR75744.1| putative amino acid ABC transporter, ATP-binding protein [Eubacterium rectale ATCC 33656] Length = 261 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 58/248 (23%), Positives = 96/248 (38%), Gaps = 36/248 (14%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +++L R +E+ G+ ++ +E A A +G G GKTTL + + Sbjct: 1 MAILEVRNIEKHFGRTNVLKDVSFSMEEGNALA-------IIGSSGSGKTTLLRCL---- 49 Query: 79 GVNF--RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI----LYPAMEDF 132 NF R SG +I L +D+D + ++ ++ Y A+E+ Sbjct: 50 --NFLERPDSGQIIVNGETLFDASEAGKDKDAELRKKRLHFGMVFQQFNLFPQYTALENV 107 Query: 133 QLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 L L+ E P + K A TR+ L DR G+ R+N Y + Sbjct: 108 TLAERLLAQETPEFKKDKK--------AILTRIDEHGKELLDRMGLAERMNHYPHQLSGG 159 Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-------VAHAKTITR 243 QR A LA+ + C S P + G +L+ +R A+ V H R Sbjct: 160 QQQRVAIARALALKPDILCFDEPTSALDPELTGEVLKVIRSLAQQNTTMIIVTHEMAFAR 219 Query: 244 EIADAALL 251 ++AD + Sbjct: 220 DVADQVIF 227 >gi|156938218|ref|YP_001436014.1| ATPase AAA [Ignicoccus hospitalis KIN4/I] gi|156567202|gb|ABU82607.1| AAA family ATPase, CDC48 subfamily [Ignicoccus hospitalis KIN4/I] Length = 729 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 16/115 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ EA L+ +E E H VL GPPG GKT LA+ +A E Sbjct: 187 TWEDIGDLEEAKERLREIVELPMKHPEIFRHLGIEPPKGVLLYGPPGTGKTMLAKALANE 246 Query: 78 LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 +G F + +GP I G+ L + + ++FIDEI ++ EE+ Sbjct: 247 IGAYFIAINGPEIMSKYYGESEQRLREIFEEARKNAPSIIFIDEIDAIAPKREEV 301 Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 20/34 (58%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ A E NF + GP I Sbjct: 502 ILLFGPPGTGKTLLAKAAATESQANFIAVRGPEI 535 >gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum cryptofilum OPF8] gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus Korarchaeum cryptofilum OPF8] Length = 331 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ GQ + LK F+E ++ H+LF GP G GKTT A +A +L Sbjct: 11 RPKTLDDVVGQDDIIRALKGFVEK-----RSMPHLLFAGPAGTGKTTTALALANDL 61 >gi|156087400|ref|XP_001611107.1| cell division protein metalloprotease FtsH [Babesia bovis T2Bo] gi|154798360|gb|EDO07539.1| cell division protein metalloprotease FtsH, putative [Babesia bovis] Length = 658 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL VGPPG GKT LA+ VA E + F TSGP + G A + NL + + Sbjct: 251 VLLVGPPGTGKTMLAKAVATEANIPFIYTSGPEFVEIFVGQGAQRVRNLFAKARKQAPCI 310 Query: 109 LFIDEI 114 +FIDEI Sbjct: 311 VFIDEI 316 >gi|329765851|ref|ZP_08257417.1| ATPase central domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137694|gb|EGG41964.1| ATPase central domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 364 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ + + G E+ S++ IE + +L VGPPG+GKTT+A + A++ G + Sbjct: 7 RPQNISDMIGNEESRSSI---IEWFTKWKKGTKPLLLVGPPGIGKTTIAYITAKQFGYDV 63 Query: 83 RSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEI 114 + + + +LT +L ++FIDE+ Sbjct: 64 VGLNASDVRSKSRINEILTPVLGNVSLLGIPMIFIDEV 101 >gi|322504519|emb|CAM37646.2| putative peroxisome assembly protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 959 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ +NF GP Sbjct: 684 VLFYGPPGCGKTLLAKAVATEMNMNFMFVKGP 715 >gi|294783460|ref|ZP_06748784.1| DNA polymerase III, gamma/tau subunit [Fusobacterium sp. 1_1_41FAA] gi|294480338|gb|EFG28115.1| DNA polymerase III, gamma/tau subunit [Fusobacterium sp. 1_1_41FAA] Length = 482 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 32/227 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + E +G+ E +LK+ ++ K+ A A LF GP G+GKTT+A+++A+ GVN Sbjct: 10 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63 Query: 83 RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + G + + A+ L ++ IDEI L E+I Y +E + Sbjct: 64 LNLGEDGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120 Query: 134 LDLMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF-- 182 ++ E N S I ATT + + + R R +F Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISRCQ---RYDFKA 177 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 +IED+K+ ++ K L+++DE I S G+ R + +L R+ Sbjct: 178 LDIEDMKSGLKHILKEENLSMSDEVYPLIYENSSGSMRDSISILERL 224 >gi|284054153|ref|ZP_06384363.1| AAA ATPase, central region [Arthrospira platensis str. Paraca] Length = 622 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD-- 107 E VL VGPPG GKT A+ +A ELGVN+ + GP VI K G+ L + ++ Sbjct: 134 EPTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAK 193 Query: 108 ----VLFIDEIHRLS 118 ++FIDEI L+ Sbjct: 194 NAPCIIFIDEIDSLA 208 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101 + +A A +L GPPG GKT LA+ VA + NF +GP V A + L Sbjct: 396 ETKARAPKGILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRELFA 455 Query: 102 NLEDRD--VLFIDEIHRLS 118 D V+FIDE+ L+ Sbjct: 456 KARQADPCVIFIDELDTLA 474 >gi|159472777|ref|XP_001694521.1| predicted protein [Chlamydomonas reinhardtii] gi|158276745|gb|EDP02516.1| predicted protein [Chlamydomonas reinhardtii] Length = 580 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 16/88 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----V 108 VL GPPG GKT LA +A E GV F S P I +G+ A L L E R+ + Sbjct: 19 VLLHGPPGCGKTALANAIANECGVPFLRVSAPEIVSGMSGESEAKLRQLFNEARELAPCI 78 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDL 136 +FIDEI + ++P E Q ++ Sbjct: 79 VFIDEI--------DAIFPKRETAQREM 98 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 20/36 (55%), Positives = 22/36 (61%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 A VL GPPG GKT +A+ VA E G NF S GP Sbjct: 346 AASGVLLYGPPGCGKTLVAKAVANESGANFISIKGP 381 >gi|149641609|ref|XP_001512479.1| PREDICTED: similar to nuclear VCP-like protein NVLp.2 [Ornithorhynchus anatinus] Length = 677 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 439 ILLAGPPGCGKTLLAKAVANESGLNFISVKGP 470 >gi|73971212|ref|XP_866054.1| PREDICTED: similar to valosin-containing protein isoform 4 [Canis familiaris] Length = 761 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 469 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 528 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 529 LFFDELDSIA 538 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 196 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 229 >gi|71415208|ref|XP_809678.1| RuvB-like DNA helicase [Trypanosoma cruzi strain CL Brener] gi|70874098|gb|EAN87827.1| RuvB-like DNA helicase, putative [Trypanosoma cruzi] Length = 459 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQV+A + +E +++ A +LF GPPG GKT LA +A+ELG Sbjct: 42 FVGQVKAREAAGIVVELTRSKKMAGRALLFAGPPGTGKTALALGIAKELG 91 >gi|327264770|ref|XP_003217184.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Anolis carolinensis] Length = 975 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ + Sbjct: 675 VLFYGPPGCGKTLLAKAIANECQANFVSIKGPELLTMWFGESEANVRDVFDKARQAAPCI 734 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 735 LFFDELDSIA 744 Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 402 ILLYGPPGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 461 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 462 IFIDEL 467 >gi|301061956|ref|ZP_07202683.1| cell division protease FtsH [delta proteobacterium NaphS2] gi|300443939|gb|EFK07977.1| cell division protease FtsH [delta proteobacterium NaphS2] Length = 611 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 50/107 (46%), Gaps = 15/107 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA L IE K A + VL VGPPG GKT LA+ VA E Sbjct: 155 TFEDAAGVDEAKQELVEVIEFLKEPARFTELGGRMPKGVLLVGPPGTGKTLLAKAVAGES 214 Query: 79 GVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEIHRL 117 GV F S SG + A + L T +++ ++FIDE+ L Sbjct: 215 GVPFFSLSGSEFVEMFVGLGAARVRDLFTQAKEKSPCIIFIDELDAL 261 >gi|194225438|ref|XP_001498145.2| PREDICTED: similar to valosin [Equus caballus] Length = 822 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 532 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 591 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 592 LFFDELDSIA 601 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 259 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 292 >gi|56758882|gb|AAW27581.1| SJCHGC09453 protein [Schistosoma japonicum] Length = 802 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIASECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 >gi|257051069|sp|P23787|TERA_XENLA RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; Short=p97; AltName: Full=Valosin-containing protein; Short=VCP gi|28422362|gb|AAH46949.1| Vcp-prov protein [Xenopus laevis] Length = 805 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|54020867|ref|NP_001005677.1| transitional endoplasmic reticulum ATPase [Xenopus (Silurana) tropicalis] gi|82183742|sp|Q6GL04|TERA_XENTR RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; Short=p97; AltName: Full=Valosin-containing protein; Short=VCP gi|49257794|gb|AAH74716.1| valosin-containing protein [Xenopus (Silurana) tropicalis] Length = 805 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|71661573|ref|XP_817806.1| RuvB-like DNA helicase [Trypanosoma cruzi strain CL Brener] gi|70883019|gb|EAN95955.1| RuvB-like DNA helicase, putative [Trypanosoma cruzi] Length = 459 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 DAD S +P + + F GQV+A + +E +++ A +LF GPPG GKT LA +A Sbjct: 30 DADGSA-KP-SADGFVGQVKAREAAGIVVELTRSKKMAGRALLFAGPPGTGKTALALGIA 87 Query: 76 RELG 79 +ELG Sbjct: 88 KELG 91 >gi|332228697|ref|XP_003263530.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Nomascus leucogenys] Length = 791 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 558 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 559 LFFDELDSIA 568 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 226 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 285 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 286 IFIDELDAIA 295 >gi|73971226|ref|XP_866167.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 11 [Canis familiaris] Length = 776 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|15231775|ref|NP_190891.1| cell division cycle protein 48, putative / CDC48, putative [Arabidopsis thaliana] gi|28201772|sp|Q9SCN8|CD48D_ARATH RecName: Full=Cell division control protein 48 homolog D; Short=AtCDC48d; AltName: Full=Transitional endoplasmic reticulum ATPase D gi|6630743|emb|CAB64226.1| CDC48-like protein [Arabidopsis thaliana] gi|110737510|dbj|BAF00697.1| CDC48 - like protein [Arabidopsis thaliana] gi|332645529|gb|AEE79050.1| cell division control protein 48-D [Arabidopsis thaliana] Length = 815 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|149609398|ref|XP_001520419.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 805 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 513 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 572 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 573 LFFDELDSIA 582 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 240 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 273 >gi|153832218|ref|ZP_01984885.1| ATPase involved in DNA repair [Vibrio harveyi HY01] gi|148871529|gb|EDL70384.1| ATPase involved in DNA repair [Vibrio harveyi HY01] Length = 1620 Score = 44.3 bits (103), Expect = 0.026, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 12/101 (11%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIE---------AAKAR 50 + R LLS ++ED +S +PR L F ++ + S L + + K R Sbjct: 1198 LSQRTQLLS--CAKEDFRLSEFKPRPLTSFVRNKLISESYLPLIGDNFAKQMGTLGDKKR 1255 Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 + + +L + PPG GKTTL + VA +LG+ F +GP I Sbjct: 1256 TDLMGMLLLISPPGYGKTTLIEYVAHKLGLVFMKINGPSIG 1296 >gi|154334731|ref|XP_001563612.1| peroxisome assembly protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 959 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E+ +NF GP Sbjct: 684 VLFYGPPGCGKTLLAKAVATEMNMNFMFVKGP 715 >gi|121807781|sp|Q2V573|LONP2_PICAN RecName: Full=Lon protease homolog 2, peroxisomal gi|82659607|gb|ABB88892.1| peroxisomal Lon protease [Pichia angusta] Length = 935 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 47/227 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------ALL 100 +L GPPG+GKT+LA+ +A LG F+ S + DL AL Sbjct: 448 LLLTGPPGVGKTSLARSIATTLGRKFQRISVGGLNDFADLKGHRRTYVGAIPGLIVQALR 507 Query: 101 TNLEDRDVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 + V+ +DE+ ++ + EIL P D +G I+L Sbjct: 508 RSQSMNPVILLDEVDKIGSNSRKGDPEAALLEILDPEQNTNFHDHYIG-------FPIDL 560 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRL---NFYEIEDL--KTIVQRGAKLTGL----- 201 S+ + + + L++PL+DR + I L N+ E ++ K ++ R + GL Sbjct: 561 SQILFVCTSNDLWQLSDPLRDRMEV-IELAGYNYMEKVEISKKYLIPRQLERAGLSSDAV 619 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 A+ DE ++A P I R L R+ A + K + R++ +A Sbjct: 620 AMDDETILKMATHYTSEPGI--RNLERL--IAAICRGKAVERQMGEA 662 >gi|73961501|ref|XP_537239.2| PREDICTED: similar to Nuclear valosin-containing protein-like (Nuclear VCP-like protein) (NVLp) [Canis familiaris] Length = 955 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G+NF S GP Sbjct: 685 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 716 >gi|74198702|dbj|BAE39824.1| unnamed protein product [Mus musculus] Length = 806 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP-6] gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP-6] Length = 323 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 18/132 (13%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ I RP L++ GQ E LK ++ + L H+LF GPPG+GKT + Sbjct: 4 KEEIWIEKYRPERLDDIVGQDEIVRRLKSYV-----KTRNLPHLLFSGPPGVGKTAASIS 58 Query: 74 VAREL-GVNFRSTSGPVIA-----------KAGDLAALLTNLE-DRDVLFIDEIHRLSII 120 + +E+ G +R+ + A K D A + E D V+F+DE L+ Sbjct: 59 IVKEIFGETWRNNFIELNASDERGIDIIRHKVKDFARMAPLGEADFKVIFLDEADALTND 118 Query: 121 VEEILYPAMEDF 132 + L ME + Sbjct: 119 AQSALRRTMERY 130 >gi|330038957|ref|XP_003239746.1| cell division control protein 48 [Cryptomonas paramecium] gi|327206671|gb|AEA38848.1| cell division control protein 48 [Cryptomonas paramecium] Length = 753 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 498 VLFYGPPGCGKTLLAKAIANECQANFISIKGP 529 >gi|166031008|ref|ZP_02233837.1| hypothetical protein DORFOR_00689 [Dorea formicigenerans ATCC 27755] gi|166029275|gb|EDR48032.1| hypothetical protein DORFOR_00689 [Dorea formicigenerans ATCC 27755] Length = 423 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 28/130 (21%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGP 62 +DI+LL+P ++EF GQ EA L V + R A ++L +GP Sbjct: 65 SDINLLKPEEIKEFLDDYVIGQDEAKKVLSVAVYNHYKRIMAQRDLGVELNKSNILMLGP 124 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------V 108 G GKT LAQ +A+ L V F + +AG D+ +L L D D + Sbjct: 125 TGCGKTLLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIERAEYGI 184 Query: 109 LFIDEIHRLS 118 +++DEI +++ Sbjct: 185 IYLDEIDKIT 194 >gi|148670553|gb|EDL02500.1| valosin containing protein, isoform CRA_a [Mus musculus] Length = 814 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|26326751|dbj|BAC27119.1| unnamed protein product [Mus musculus] Length = 806 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|330836935|ref|YP_004411576.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM 17374] gi|329748838|gb|AEC02194.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM 17374] Length = 658 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78 T + GQ EA L+ ++ K AR + + VL VGPPG GKT LA+ VA E Sbjct: 205 TFVDVAGQEEAKLELEEIVDFLKEPARFQKIGARIPKGVLLVGPPGTGKTLLAKAVAGEA 264 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV+F TSG + G AA + +L ++ +LFIDE+ Sbjct: 265 GVSFFHTSGSDFVEMFVGMGAARVRDLFEQGRKNAPCILFIDEL 308 >gi|312134563|ref|YP_004001901.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor owensensis OL] gi|311774614|gb|ADQ04101.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor owensensis OL] Length = 616 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE ++ N + +IE A +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 178 EELREVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L D+ V+FIDEI Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 269 >gi|269792562|ref|YP_003317466.1| ATP-dependent protease La [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100197|gb|ACZ19184.1| ATP-dependent protease La [Thermanaerovibrio acidaminovorans DSM 6589] Length = 781 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 134/354 (37%), Gaps = 75/354 (21%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-----ARAEALDHVLFVGPPGL 65 N +++ +I L + E+ G E + F+ K RA+ L FVGPPG+ Sbjct: 305 NQTKDRLEIGLAQQVLDEDHYGLKEVKDRIVEFLAVRKLAGNDVRAQVL---CFVGPPGV 361 Query: 66 GKTTLAQVVARELGVNFRSTS-GPVIAKA---GDLAALLTNLEDR------------DVL 109 GKT+LA+ +AR L F + S G V +A G + L R V+ Sbjct: 362 GKTSLARSIARALNRKFVNMSLGGVRDEAEIRGHRRTYVGALPGRIIQKMRVAGVKNPVM 421 Query: 110 FIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161 +DEI ++ S + E+L P D + V +LSR I Sbjct: 422 LLDEIDKIGADFRGDPSAALLEVLDPEQNHAFSDHFL-------EVPFDLSRVMFITTAN 474 Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPR 220 + PL DR + I + Y E+ I R L V + ++ ++ S+GT Sbjct: 475 SHHTIPKPLLDRMEL-ISIPGYVAEEKVHIASR--HLWPRIVRENGLSDMGLKLSKGT-- 529 Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280 L R + D+ TRE G LD R L+ IAR V Sbjct: 530 ----LERIISDY---------TRE-------------AGVRNLD-RQLSKIARKVACARV 562 Query: 281 GIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR---LLMPIAWQHLGIDI 331 E A PR L++ +G+ P+G ++ +AW G D+ Sbjct: 563 AAEESGASFEAPRITTASLVKYLGAPKGYDTVIPQGSAVGAVVGLAWTETGGDV 616 >gi|224069527|ref|XP_002326365.1| predicted protein [Populus trichocarpa] gi|222833558|gb|EEE72035.1| predicted protein [Populus trichocarpa] Length = 810 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCV 579 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 580 LFFDELDSIA 589 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 247 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 306 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 307 IFIDEIDSIA 316 >gi|126334782|ref|XP_001368198.1| PREDICTED: similar to valosin [Monodelphis domestica] Length = 806 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|169614385|ref|XP_001800609.1| hypothetical protein SNOG_10333 [Phaeosphaeria nodorum SN15] gi|111061548|gb|EAT82668.1| hypothetical protein SNOG_10333 [Phaeosphaeria nodorum SN15] Length = 734 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 531 VLFYGPPGTGKTLLAKAVANECAANFISIKGP 562 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 257 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 317 IFIDEIDSIA 326 >gi|26350783|dbj|BAC39028.1| unnamed protein product [Mus musculus] Length = 723 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 431 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 490 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 491 LFFDELDSIA 500 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 158 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 217 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 218 IFIDELDAIA 227 >gi|314986604|gb|EFT30696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL005PA2] Length = 429 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 37/135 (27%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFI---------EAAKARAE---------ALDHV 57 L RPR L EF GQ EA L V + EA RA ++ Sbjct: 62 LPRPRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNI 121 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103 L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181 Query: 104 EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 182 AERGIVYIDEIDKVA 196 >gi|294495296|ref|YP_003541789.1| adenosinetriphosphatase [Methanohalophilus mahii DSM 5219] gi|292666295|gb|ADE36144.1| Adenosinetriphosphatase [Methanohalophilus mahii DSM 5219] Length = 473 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR- 106 +AE +L GPPG GKT L++ A+EL NF S +G +++K G+ L L ++ Sbjct: 231 KAELPRGILLYGPPGTGKTMLSKAAAKELDANFYSINGSDILSKWYGESEKNLNTLFEKA 290 Query: 107 -----DVLFIDEIHRL 117 V+FIDEI L Sbjct: 291 KASSPSVIFIDEIDAL 306 >gi|171315515|ref|ZP_02904751.1| AAA ATPase central domain protein [Burkholderia ambifaria MEX-5] gi|171099352|gb|EDT44090.1| AAA ATPase central domain protein [Burkholderia ambifaria MEX-5] Length = 384 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 30/216 (13%) Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112 +GPPG+GKTTLA++ A F + S V+ D+ + +D +LF+D Sbjct: 1 MGPPGVGKTTLARLTALAFDCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVD 59 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 EIHR + ++ L P +E L +G S ++N + + + +V +L + Sbjct: 60 EIHRFNKGQQDALLPFVES-GLVTFIGATTENPSFEVN----SALLSRAQVYVLQS---- 110 Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 LN E+ L Q A L GLA D+A + + G R LL + + Sbjct: 111 -------LNDDEMRQLLKRAQEIA-LDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTA 162 Query: 233 AEVAHAKTITREIADAALLRLA--IDKMG---FDQL 263 A + TI + +A+ A DK G +DQ+ Sbjct: 163 ASSSRITTIDADFVSSAMTLNARRFDKGGDNFYDQI 198 >gi|15826905|ref|NP_301168.1| hypothetical protein ML0055 [Mycobacterium leprae TN] gi|221229383|ref|YP_002502799.1| hypothetical protein MLBr_00055 [Mycobacterium leprae Br4923] gi|7388384|sp|O33089|Y055_MYCLE RecName: Full=Uncharacterized protein ML0055 gi|2370285|emb|CAA75205.1| hypothetical protein [Mycobacterium leprae] gi|13092452|emb|CAC29563.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932490|emb|CAR70148.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 573 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 26/133 (19%) Query: 3 DREGLLSRNVSQEDADISLLRPRT-LEEF-----TGQVEACSNLKVFIEAAKARAEALDH 56 DR+ LL++ ++ D I L R +T +E + +V A +KV A+ H Sbjct: 278 DRDRLLTQAQAELDRQIGLTRVKTQIERYRAATMMAKVRAAKGMKV--------AQPSKH 329 Query: 57 VLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDL-----------AALLTNLE 104 ++F GPPG GKTT+A+VVA L G+ S V D AA +L Sbjct: 330 MIFTGPPGTGKTTIARVVANILAGLGVISEPKLVETSRKDFVAEYEGQSAVKAAKTIDLA 389 Query: 105 DRDVLFIDEIHRL 117 VLFIDE + L Sbjct: 390 LGGVLFIDEAYAL 402 >gi|282890179|ref|ZP_06298709.1| hypothetical protein pah_c014o031 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499836|gb|EFB42125.1| hypothetical protein pah_c014o031 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 830 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 71/304 (23%), Positives = 122/304 (40%), Gaps = 62/304 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 + VGPPG+GKT++ + +AR L F S + A G L L Sbjct: 387 ICLVGPPGVGKTSIGKSIARSLNRKFYRFSVGGMRDEAEVKGHRRTYIGAMPGKLIQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + + V+ +DE+ ++ + E+L P LD + V+ NLS Sbjct: 447 FCQTTNPVIMLDEVDKMGSSYQGDPASALLEVLDPEQNCEFLDHYL-------DVRCNLS 499 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEA 207 I + + PL+DR I +RL+ Y +++ K ++ R K GL + + Sbjct: 500 DILFIVTANVLDTIPEPLKDRMDI-LRLSGYIMQEKIEIAKKYLIPRNRKAMGLKASQVS 558 Query: 208 ACEIAMRS--RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265 A+R+ G R +G VR + K I R +LA+ + +Q ++ Sbjct: 559 FTNDALRAIINGYARESG-----VRSLEN--NLKKILR--------KLAVKIVREEQAEV 603 Query: 266 RYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI-EPYMIQQGFIQRTPRGRLLMPIAW 324 + + ISA D++ + + +P + F +RTP G + M +AW Sbjct: 604 NTKKKKSSKQPTAREKMHRISA------DSLSEYLGKPVFVSDRFYERTPVG-VCMGLAW 656 Query: 325 QHLG 328 LG Sbjct: 657 TALG 660 >gi|226496269|ref|NP_001145759.1| hypothetical protein LOC100279266 [Zea mays] gi|219884327|gb|ACL52538.1| unknown [Zea mays] Length = 476 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 91/234 (38%), Gaps = 36/234 (15%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107 +L GPPG GKTTLA +A E GV F S P + +G A N+ Sbjct: 226 LLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVV-SGVSGASEENIRGLFQKAYRTAPS 284 Query: 108 VLFIDEIHRLSIIVEEI-----------LYPAMEDFQLDLMVGEGPS---ARSVKINLSR 153 ++FIDEI ++ E + L M+ F + +G G S A S + Sbjct: 285 IVFIDEIDAIASKRENLQREMERRIVTQLMTCMDQFHQN--IGSGSSNLEAESSEKKPGY 342 Query: 154 FTLIAATTRVGLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 +I AT R + L+ RF I L + K I+ K+ + E ++ Sbjct: 343 VIVIGATNRPDAVDQALRRPGRFDREISLGVPDENARKQIL----KMLTQHLRLEGEFDL 398 Query: 212 AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265 +R TP G L+ + D A + I D R I++ G + D Sbjct: 399 FKIARATPGFVGADLKALVDKA----GNLAMKRIIDERRARCCIEQDGSSKHDW 448 >gi|111305821|gb|AAI21795.1| Valosin-containing protein [Homo sapiens] Length = 806 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|73971214|ref|XP_866075.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 5 [Canis familiaris] Length = 759 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|73971222|ref|XP_866137.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 9 [Canis familiaris] Length = 787 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 495 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 554 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 555 LFFDELDSIA 564 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|15805648|ref|NP_294344.1| moxR protein [Deinococcus radiodurans R1] gi|6458321|gb|AAF10200.1|AE001920_3 moxR protein [Deinococcus radiodurans R1] Length = 320 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 28/161 (17%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------- 105 H+L PG+GKTTLAQ +AR LG+ FR DL L ++ D Sbjct: 52 HLLIEDQPGVGKTTLAQALARTLGLGFRRVQFTSDLLPADL--LGVSIWDAASSTFRYQP 109 Query: 106 ----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161 ++L DEI+R + + L AME+ Q V EG R + F +IA Sbjct: 110 GPIFSELLLADEINRATPRTQGALLEAMEERQ----VSEGGVTRPLP---DPFFVIATQN 162 Query: 162 RVGLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAK 197 + T+PL DRF + + L + + +T+++ G + Sbjct: 163 PAAFVGTSPLPEAQLDRFLMTVTLGYPDARAERTLLETGGR 203 >gi|156119445|ref|NP_001095217.1| transitional endoplasmic reticulum ATPase [Xenopus laevis] gi|64966|emb|CAA38146.1| p97 subunit of 15S Mg(2+)- ATPase [Xenopus laevis] Length = 805 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|297816624|ref|XP_002876195.1| hypothetical protein ARALYDRAFT_485698 [Arabidopsis lyrata subsp. lyrata] gi|297322033|gb|EFH52454.1| hypothetical protein ARALYDRAFT_485698 [Arabidopsis lyrata subsp. lyrata] Length = 810 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 305 IFIDELDSIA 314 >gi|296190199|ref|XP_002743098.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Callithrix jacchus] Length = 806 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|289426538|ref|ZP_06428281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes SK187] gi|289428633|ref|ZP_06430316.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes J165] gi|295131120|ref|YP_003581783.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes SK137] gi|289153266|gb|EFD01984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes SK187] gi|289158031|gb|EFD06251.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes J165] gi|291376588|gb|ADE00443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes SK137] gi|313763510|gb|EFS34874.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL013PA1] gi|313773447|gb|EFS39413.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL074PA1] gi|313793900|gb|EFS41924.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL110PA1] gi|313801290|gb|EFS42541.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL110PA2] gi|313808031|gb|EFS46512.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL087PA2] gi|313811500|gb|EFS49214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL083PA1] gi|313816692|gb|EFS54406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL059PA1] gi|313819597|gb|EFS57311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL046PA2] gi|313822078|gb|EFS59792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL036PA1] gi|313823688|gb|EFS61402.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL036PA2] gi|313826012|gb|EFS63726.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL063PA1] gi|313829480|gb|EFS67194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL063PA2] gi|313834853|gb|EFS72567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL056PA1] gi|313839987|gb|EFS77701.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL086PA1] gi|314914810|gb|EFS78641.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL005PA4] gi|314920717|gb|EFS84548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL050PA3] gi|314924728|gb|EFS88559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL036PA3] gi|314930597|gb|EFS94428.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL067PA1] gi|314954448|gb|EFS98854.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL027PA1] gi|314957525|gb|EFT01628.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL002PA1] gi|314961992|gb|EFT06093.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL002PA2] gi|314963745|gb|EFT07845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL082PA1] gi|314974117|gb|EFT18213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL053PA1] gi|314976593|gb|EFT20688.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL045PA1] gi|314978952|gb|EFT23046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL072PA2] gi|314984412|gb|EFT28504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL005PA1] gi|314990962|gb|EFT35053.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL005PA3] gi|315079594|gb|EFT51587.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL053PA2] gi|315081177|gb|EFT53153.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL078PA1] gi|315083640|gb|EFT55616.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL027PA2] gi|315087059|gb|EFT59035.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL002PA3] gi|315089234|gb|EFT61210.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL072PA1] gi|315095256|gb|EFT67232.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL038PA1] gi|315099138|gb|EFT71114.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL059PA2] gi|315100379|gb|EFT72355.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL046PA1] gi|327328481|gb|EGE70243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL096PA2] gi|327329653|gb|EGE71409.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL096PA3] gi|327444268|gb|EGE90922.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL043PA2] gi|327444852|gb|EGE91506.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL043PA1] gi|327446338|gb|EGE92992.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL013PA2] gi|327452074|gb|EGE98728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL092PA1] gi|327454889|gb|EGF01544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL087PA3] gi|327457825|gb|EGF04480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL083PA2] gi|328752327|gb|EGF65943.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL020PA1] gi|328755277|gb|EGF68893.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL087PA1] gi|328758242|gb|EGF71858.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL025PA2] gi|328760010|gb|EGF73593.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL099PA1] gi|332675997|gb|AEE72813.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Propionibacterium acnes 266] Length = 429 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 37/135 (27%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFI---------EAAKARAE---------ALDHV 57 L RPR L EF GQ EA L V + EA RA ++ Sbjct: 62 LPRPRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNI 121 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103 L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181 Query: 104 EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 182 AERGIVYIDEIDKVA 196 >gi|149045716|gb|EDL98716.1| valosin-containing protein, isoform CRA_a [Rattus norvegicus] Length = 686 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|121534154|ref|ZP_01665979.1| Endopeptidase La [Thermosinus carboxydivorans Nor1] gi|121307257|gb|EAX48174.1| Endopeptidase La [Thermosinus carboxydivorans Nor1] Length = 562 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 68/277 (24%), Positives = 98/277 (35%), Gaps = 62/277 (22%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP T E GQ E L+ + + HVL GPPG+GKT A++V E N Sbjct: 65 RPSTFAEIVGQEEGLKALRAALCGPNPQ-----HVLIYGPPGVGKTAAARLVLEEAKRNP 119 Query: 83 RSTSGPVIAKAGDLAALLTNLEDR------------------------------------ 106 S GP AK ++ A ++R Sbjct: 120 LSPFGPN-AKFVEMDATTARFDERGIADPLIGTVHDPIYQGAGALGMAGIPQPKPGAVTK 178 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL------------ 151 +LFIDEI L I L +ED ++ L E S N+ Sbjct: 179 AHGGILFIDEIGELHHIQMNKLLKVLEDRKVFL---ESSYYNSEDTNIPSHIHDIFQNGL 235 Query: 152 -SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210 + F L+ ATTR+ P + I +++ I AK G + D + Sbjct: 236 PADFRLVGATTRMAHEIPPAIRSRCVEIFFRPLLPDEISLIAGNAAKKIGFGLED-GVLD 294 Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 I R + R A +++ A+ KTITR A+ Sbjct: 295 IVKRYATSGREAVNIIQIAAGIAQNEGNKTITRAHAE 331 >gi|15897671|ref|NP_342276.1| replication factor C large subunit [Sulfolobus solfataricus P2] gi|284174996|ref|ZP_06388965.1| replication factor C large subunit [Sulfolobus solfataricus 98/2] gi|42559540|sp|Q9UXF6|RFCL_SULSO RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit; AltName: Full=SsoRFC large subunit gi|6015707|emb|CAB57534.1| replication factor C, large subunit [Sulfolobus solfataricus P2] gi|13813942|gb|AAK41066.1| Activator 1, replication factor C (RFC) large subunit (rfcL) [Sulfolobus solfataricus P2] gi|261602439|gb|ACX92042.1| AAA ATPase central domain protein [Sulfolobus solfataricus 98/2] Length = 405 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RPR+L++ Q +A L+ +IE+ + VL GPPG+GKT LA+ +A + Sbjct: 9 RPRSLKDVENQDDAKKQLQEWIESWLNGNSNVKAVLLHGPPGVGKTVLAEALAHDYN 65 >gi|331010053|gb|EGH90109.1| ATP-dependent protease La [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 805 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-----------GP----VIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S GP + A+ G L L Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGPRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 554 Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230 + L+++D A E R G + +L + VR Sbjct: 555 SKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589 >gi|327288855|ref|XP_003229140.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Anolis carolinensis] Length = 807 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|326934708|ref|XP_003213427.1| PREDICTED: transitional endoplasmic reticulum ATPase-like, partial [Meleagris gallopavo] Length = 674 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 382 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 441 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 442 LFFDELDSIA 451 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 127 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 186 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 187 IFIDELDAIA 196 >gi|218184617|gb|EEC67044.1| hypothetical protein OsI_33786 [Oryza sativa Indica Group] Length = 755 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISVKGP 551 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 247 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 306 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 307 IFIDEIDSIA 316 >gi|167393611|ref|XP_001740649.1| replication factor C subunit [Entamoeba dispar SAW760] gi|165895162|gb|EDR22913.1| replication factor C subunit, putative [Entamoeba dispar SAW760] Length = 329 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 41/234 (17%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 +S ++A RP+TL++ GQ E LK +++ L ++LF GPPG GKTT Sbjct: 1 MSGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSLDSG------LPNLLFFGPPGSGKTTSI 54 Query: 72 QVVARELGVNFRSTSGPVIAKAGD-----LAALLTNLEDRDVLFIDEIHRLSIIV---EE 123 VA EL + + + + L N +DV D I +I+ + Sbjct: 55 LAVAHELFQGYFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGIPDYKLIILDESD 114 Query: 124 ILYP--------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175 L P MEDF + +RF LI + + P+ R Sbjct: 115 ALTPDAQTALRRMMEDFTKN----------------TRFCLIC--NYISRILPPISSR-C 155 Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 I R + E + +Q + G +VT+EA +++ S G R LL+++ Sbjct: 156 IKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKL 209 >gi|185132242|ref|NP_001117982.1| valosin containing protein [Oncorhynchus mykiss] gi|51949893|gb|AAU14869.1| valosin containing protein [Oncorhynchus mykiss] Length = 748 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 456 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 515 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 516 LFFDELDSIA 525 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 183 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 242 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 243 IFIDELDAIA 252 >gi|66934627|gb|AAY58902.1| putative CDC48/ATPase [Hyaloperonospora parasitica] Length = 804 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA E NF S GP + G+ A + + D+ V Sbjct: 509 VLFYGPPGCGKTLLAKAVANECQANFISIKGPELLTMWFGESEANVREVFDKARGAAPCV 568 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 569 LFFDELDSIA 578 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 236 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 295 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 296 IFIDEIDSIA 305 >gi|162605898|ref|XP_001713464.1| cell division cycle protein 48 homolog [Guillardia theta] gi|13794396|gb|AAK39773.1|AF083031_130 cell division cycle protein 48 homolog [Guillardia theta] Length = 752 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 493 VLFYGPPGCGKTLLAKAIANECQANFISIKGP 524 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GP G GKT +A+ VA E G S +GP I AG+ + L D + Sbjct: 220 VLMYGPSGCGKTLIAKAVANETGAFLYSINGPEIMSKLAGESESNLKKAFDEAEKNSPSI 279 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 280 IFIDEIDSIA 289 >gi|28848618|gb|AAO13093.1| Rad17 [Xenopus laevis] Length = 674 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 12/106 (11%) Query: 11 NVSQEDADISLLRPRTLEEFT------GQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 + SQ D I RP E +VEAC LK +E + + + +L GPPG Sbjct: 79 DYSQNDPWIDKYRPEIQAELAVHKKKIEEVEAC--LKTHVEK-RPQKQGGQILLLTGPPG 135 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF 110 GKT QV+ +E+G+ + P++ + L + DRD F Sbjct: 136 CGKTATIQVLTKEMGIQVQEWINPLMQ---EFKQDLPEVFDRDTRF 178 >gi|63054529|ref|NP_593287.2| AAA family ATPase Cdc48 [Schizosaccharomyces pombe 972h-] gi|27151477|sp|Q9P3A7|CDC48_SCHPO RecName: Full=Cell division cycle protein 48 gi|159883922|emb|CAB99275.2| AAA family ATPase Cdc48 [Schizosaccharomyces pombe] Length = 815 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 534 VLFFGPPGTGKTLLAKAIANECSANFISVKGP 565 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 261 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 320 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 321 IFIDEIDSIA 330 >gi|326527541|dbj|BAK08045.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 813 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 522 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCV 581 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 582 LFFDELDSIA 591 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 249 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 308 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 309 IFIDEIDSIA 318 >gi|312082008|ref|XP_003143266.1| ATPase [Loa loa] gi|307761567|gb|EFO20801.1| ATPase [Loa loa] Length = 714 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 477 ILLCGPPGCGKTLLAKAVANESGMNFISIKGP 508 >gi|298229917|ref|ZP_06963598.1| recombination factor protein RarA [Streptococcus pneumoniae str. Canada MDR_19F] Length = 390 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 10/94 (10%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA-----GDLAALLTNLED 105 A L ++ GPPG+GKT++A +A FR+ + V +K + A L Sbjct: 3 ANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEISEEAKFSGGL-- 60 Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 VL +DEIHRL ++ L P +E L +M+G Sbjct: 61 --VLLLDEIHRLDKTKQDFLLPLLES-GLVIMIG 91 >gi|220903968|ref|YP_002479280.1| ATP-dependent protease La [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868267|gb|ACL48602.1| ATP-dependent protease La [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 813 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 60/242 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+LA+ VA+ G +F R + G V +A G + L Sbjct: 356 LCFVGPPGVGKTSLARSVAKATGRDFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 415 Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 ++ + LF +DE+ +++ E+L P +D + ++ +LS Sbjct: 416 RVKYNNPLFCLDEVDKMTSDYRGDPASALLEVLDPEQNHTFMDHYL-------DLEYDLS 468 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKLTGLA 202 + I + + PL DR I I LN Y E E + I + G K + + Sbjct: 469 KIFFITTANSLHTIPVPLLDRMEI-IELNSYLETEKRHIARHFLLPRQIEEHGLKESNIR 527 Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262 V+D A EI +R + A + + REIA A + AI + + Sbjct: 528 VSDNAVLEI-----------------IRSYTREAGVRNLEREIA-ALCRKTAIKLVEEEN 569 Query: 263 LD 264 LD Sbjct: 570 LD 571 >gi|189065396|dbj|BAG35235.1| unnamed protein product [Homo sapiens] Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 8/75 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300 Query: 109 LFIDEIHRLSIIVEE 123 +FIDE+ ++ I E+ Sbjct: 301 IFIDELDAIAPIREK 315 >gi|145340922|ref|XP_001415566.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575789|gb|ABO93858.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 804 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCV 577 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 578 LFFDELDSIA 587 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|26390141|dbj|BAC25849.1| unnamed protein product [Mus musculus] Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|41393119|ref|NP_958889.1| transitional endoplasmic reticulum ATPase [Danio rerio] gi|82188427|sp|Q7ZU99|TERA_DANRE RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=Protein CDC48; AltName: Full=Valosin-containing protein; Short=VCP gi|29791670|gb|AAH50488.1| Valosin containing protein [Danio rerio] gi|45501133|gb|AAH67384.1| Valosin containing protein [Danio rerio] gi|46403223|gb|AAS92631.1| valosin-containing protein [Danio rerio] gi|122891315|emb|CAM13143.1| valosin containing protein [Danio rerio] Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|34740143|dbj|BAC87740.1| CDC48 [Danio rerio] Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|47523626|ref|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus scrofa] gi|1174636|sp|P03974|TERA_PIG RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; AltName: Full=Valosin-containing protein; Short=VCP gi|164726|gb|AAA31142.1| valosin-containing protein [Sus scrofa] Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|71755451|ref|XP_828640.1| replication factor C subunit 1 [Trypanosoma brucei TREU927] gi|70834026|gb|EAN79528.1| replication factor C, subunit 1, putative [Trypanosoma brucei] gi|261334525|emb|CBH17519.1| replication factor C large subunit, putative [Trypanosoma brucei gambiense DAL972] Length = 587 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +P+T+ + V A + LK ++E +A + + L GPPG+GKTT VVA ELG Sbjct: 19 YKPKTIAQMCYPVTA-NKLKQWMEEFEANSSKMRGALLSGPPGVGKTTSVYVVASELG 75 >gi|323455979|gb|EGB11846.1| hypothetical protein AURANDRAFT_69630 [Aureococcus anophagefferens] Length = 801 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT +A+ VA E NF S GP Sbjct: 509 VLFYGPPGCGKTLMAKAVANECQANFISVKGP 540 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 236 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 295 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 296 IFIDEIDSIA 305 >gi|313831241|gb|EFS68955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL007PA1] Length = 429 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 37/135 (27%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFI---------EAAKARAE---------ALDHV 57 L RPR L EF GQ EA L V + EA RA ++ Sbjct: 62 LPRPRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNI 121 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103 L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181 Query: 104 EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 182 AERGIVYIDEIDKVA 196 >gi|296111510|ref|YP_003621892.1| DNA-directed DNA polymerase III, gamma/tau subunit [Leuconostoc kimchii IMSNU 11154] gi|295833042|gb|ADG40923.1| DNA-directed DNA polymerase III, gamma/tau subunit [Leuconostoc kimchii IMSNU 11154] Length = 594 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 27/118 (22%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79 + RPRT ++ GQ LK IE + LF GP G GKT+ A++ ARE+ Sbjct: 9 VYRPRTFDDMVGQDVITQTLKNAIETHQTGHA----YLFSGPRGTGKTSAAKIFAREING 64 Query: 80 -------------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLS 118 V F + S ++ D+ +L N++ + V IDE+H LS Sbjct: 65 IAPETSDAQIPDIVEFDAASN---SRVEDMRDILANVDYAPIESEYKVYIIDEVHMLS 119 >gi|260591351|ref|ZP_05856809.1| ATP-dependent metalloprotease FtsH [Prevotella veroralis F0319] gi|260536717|gb|EEX19334.1| ATP-dependent metalloprotease FtsH [Prevotella veroralis F0319] Length = 678 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 68/264 (25%), Positives = 109/264 (41%), Gaps = 51/264 (19%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ A ++ +E K + D L +GPPG GKT LA+ VA E Sbjct: 182 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLIGPPGTGKTLLAKAVAGEA 241 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130 GV F S SG V A + + +++ ++FIDEI + + PAM Sbjct: 242 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKSPCIIFIDEIDAVGRARSK--NPAM- 298 Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177 G R +N S ++AAT RV +L L RF Sbjct: 299 ---------GGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQ 349 Query: 178 IRLNFYEIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 I ++ ++ + K I R KL + +I + +R TP +G + V + A Sbjct: 350 IHVDLPDLPERKDIFLVHMRNLKL-------DKNLDIDLLARQTPGFSGADIANVCNEAA 402 Query: 235 VAHAKTITREIADAALLRLAIDKM 258 + A+ ++E+A L A+D++ Sbjct: 403 LIAARHDSKEVAKQDFLD-AVDRI 425 >gi|154482728|ref|ZP_02025176.1| hypothetical protein EUBVEN_00405 [Eubacterium ventriosum ATCC 27560] gi|149736323|gb|EDM52209.1| hypothetical protein EUBVEN_00405 [Eubacterium ventriosum ATCC 27560] Length = 426 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 30/137 (21%) Query: 10 RNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---LD------ 55 NV++E+ I+LL+P+ ++EF GQ A L V + R A LD Sbjct: 54 NNVAEEE--INLLKPKEIKEFLDQYVIGQDAAKKVLSVAVYNHYKRVLAGKDLDVELQKS 111 Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD- 107 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L D D Sbjct: 112 NILLLGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDI 171 Query: 108 ------VLFIDEIHRLS 118 +++IDEI +++ Sbjct: 172 ERAQHGIIYIDEIDKIT 188 >gi|73971228|ref|XP_538712.2| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 1 [Canis familiaris] Length = 812 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|21619335|gb|AAH31847.1| Nuclear VCP-like [Mus musculus] Length = 855 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 617 ILLAGPPGCGKTLLAKAVANESGLNFISVKGP 648 Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDV------ 108 VL GPPG GKT LA +A EL + + P I +G+ L L D+ V Sbjct: 300 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCI 359 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 360 VFIDEIDAIT 369 >gi|74139564|dbj|BAE40919.1| unnamed protein product [Mus musculus] Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|6005942|ref|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo sapiens] gi|225543319|ref|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus musculus] gi|291383033|ref|XP_002708056.1| PREDICTED: valosin-containing protein [Oryctolagus cuniculus] gi|297684123|ref|XP_002819702.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Pongo abelii] gi|332831823|ref|XP_003312111.1| PREDICTED: transitional endoplasmic reticulum ATPase [Pan troglodytes] gi|6094447|sp|P55072|TERA_HUMAN RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; AltName: Full=Valosin-containing protein; Short=VCP gi|146291078|sp|Q01853|TERA_MOUSE RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; AltName: Full=Valosin-containing protein; Short=VCP gi|185177986|pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX gi|185177987|pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX gi|185177988|pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX gi|185177989|pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp gi|185177990|pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp gi|185177991|pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp gi|185177992|pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp gi|185177993|pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP gi|185177994|pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP gi|185177995|pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP gi|2984586|gb|AAC07984.1| TERA_HUMAN [Homo sapiens] gi|5410290|gb|AAD43016.1| transitional endoplasmic reticulum ATPase [Homo sapiens] gi|29144873|gb|AAH43053.1| Valosin containing protein [Mus musculus] gi|29144989|gb|AAH49114.1| Valosin containing protein [Mus musculus] gi|55662798|emb|CAH70993.1| valosin-containing protein [Homo sapiens] gi|74140012|dbj|BAE31840.1| unnamed protein product [Mus musculus] gi|74185284|dbj|BAE30119.1| unnamed protein product [Mus musculus] gi|74191623|dbj|BAE30383.1| unnamed protein product [Mus musculus] gi|74197192|dbj|BAE35141.1| unnamed protein product [Mus musculus] gi|74211628|dbj|BAE29175.1| unnamed protein product [Mus musculus] gi|83405636|gb|AAI10914.1| Valosin-containing protein [Homo sapiens] gi|119578808|gb|EAW58404.1| valosin-containing protein, isoform CRA_b [Homo sapiens] gi|122889766|emb|CAM14316.1| valosin containing protein [Mus musculus] gi|168278060|dbj|BAG11008.1| transitional endoplasmic reticulum ATPase [synthetic construct] Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|73971210|ref|XP_852626.1| PREDICTED: similar to valosin-containing protein isoform 3 [Canis familiaris] gi|301787635|ref|XP_002929233.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Ailuropoda melanoleuca] gi|296484691|gb|DAA26806.1| transitional endoplasmic reticulum ATPase [Bos taurus] gi|225450|prf||1303334A valosin precursor Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|33468981|ref|NP_080447.1| nuclear valosin-containing protein-like [Mus musculus] gi|32699478|sp|Q9DBY8|NVL_MOUSE RecName: Full=Nuclear valosin-containing protein-like; Short=NVLp; Short=Nuclear VCP-like protein gi|12836020|dbj|BAB23464.1| unnamed protein product [Mus musculus] gi|74150277|dbj|BAE24409.1| unnamed protein product [Mus musculus] gi|148681184|gb|EDL13131.1| nuclear VCP-like [Mus musculus] Length = 855 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 617 ILLAGPPGCGKTLLAKAVANESGLNFISVKGP 648 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDV------ 108 VL GPPG GKT LA +A EL + + P I +G+ L L D+ V Sbjct: 300 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCI 359 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 360 VFIDEIDAIT 369 >gi|71005554|ref|XP_757443.1| hypothetical protein UM01296.1 [Ustilago maydis 521] gi|46096926|gb|EAK82159.1| hypothetical protein UM01296.1 [Ustilago maydis 521] Length = 878 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VL GPPG GKT LA VA ELGV F S S P V +G+ + + D + Sbjct: 188 VLLHGPPGCGKTMLAGAVAGELGVPFLSISAPSVVSGTSGESEKTIRDTFDEAASIAPCI 247 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 248 LFIDEIDAIT 257 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 597 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 628 >gi|237756437|ref|ZP_04584976.1| ATP-dependent protease La [Sulfurihydrogenibium yellowstonense SS-5] gi|237691402|gb|EEP60471.1| ATP-dependent protease La [Sulfurihydrogenibium yellowstonense SS-5] Length = 770 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 45/224 (20%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAK 92 +E + LK+ E++K ++ + FVGPPG+GKT+L + +A+ L F R + G V + Sbjct: 313 LEYLAVLKLKKESSKDKSIKGPILCFVGPPGVGKTSLGRSIAKALNRKFVRISLGGVRDE 372 Query: 93 A--------------GDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAM 129 A G + + ++ V+ +DE+ ++ + E+L P Sbjct: 373 AEIRGHRRTYVGAMPGKIIQAIKQAGTKNPVIMLDEVDKIGLDFRGDPTAALLEVLDPEQ 432 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-- 187 +D +G V +LS I R+ + PL DR + IRL+ Y E+ Sbjct: 433 NKEFVDHYLG-------VPFDLSEVMFICTANRLDTIPRPLLDRMEV-IRLSGYSEEEKL 484 Query: 188 ---LKTIVQRGAKLTGLAVTDEAACEIAMRS-----RGTPRIAG 223 K ++ + K GL DE E + ++ RG R AG Sbjct: 485 HIAKKYLIPKQLKENGL---DEKTVEFSDKAITFLIRGYTREAG 525 >gi|221108162|ref|XP_002156452.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 412 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ +A E G+NF S GP Sbjct: 109 ILLAGPPGCGKTLLAKAIANEAGINFISVKGP 140 >gi|170087590|ref|XP_001875018.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650218|gb|EDR14459.1| predicted protein [Laccaria bicolor S238N-H82] Length = 817 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 518 VLFYGPPGTGKTLLAKAIANECNANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 577 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 578 MFFDELDSIA 587 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|148700414|gb|EDL32361.1| Werner helicase interacting protein 1, isoform CRA_d [Mus musculus] Length = 339 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 19/105 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +EA + + ++ GPPG GKTTLA ++A Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 280 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113 ++ + F + S AK D+ ++ ++ + +LFIDE Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDE 324 >gi|146448775|gb|ABQ41382.1| cell division cycle 48 [Paralichthys olivaceus] Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 >gi|90093334|ref|NP_001035017.1| transitional endoplasmic reticulum ATPase-like [Danio rerio] gi|89130628|gb|AAI14307.1| Zgc:136908 [Danio rerio] gi|220672874|emb|CAX14485.1| novel protein similar to vertebrate valosin-containing protein (VCP, zgc:136908) [Danio rerio] Length = 805 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 516 VLFYGPPGCGKTLLAKAIANECQANFVSIKGP 547 Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 243 ILLYGPPGTGKTLVARAVANETGAFFFLINGPEI 276 >gi|77735541|ref|NP_001029466.1| transitional endoplasmic reticulum ATPase [Bos taurus] gi|122140828|sp|Q3ZBT1|TERA_BOVIN RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; AltName: Full=Valosin-containing protein; Short=VCP gi|73586667|gb|AAI03126.1| Valosin-containing protein [Bos taurus] Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|74192715|dbj|BAE34876.1| unnamed protein product [Mus musculus] Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|40889614|pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|17865351|ref|NP_446316.1| transitional endoplasmic reticulum ATPase [Rattus norvegicus] gi|1174637|sp|P46462|TERA_RAT RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; AltName: Full=Valosin-containing protein; Short=VCP gi|641973|gb|AAC52154.1| transitional endoplasmic reticulum ATPase [Rattus norvegicus] gi|38014694|gb|AAH60518.1| Valosin-containing protein [Rattus norvegicus] gi|149045717|gb|EDL98717.1| valosin-containing protein, isoform CRA_b [Rattus norvegicus] gi|1093322|prf||2103265A transitional endoplasmic reticulum ATPase Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|55217|emb|CAA78412.1| murine valosin-containing protein [Mus musculus] Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|26344299|dbj|BAC35806.1| unnamed protein product [Mus musculus] Length = 698 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 460 ILLAGPPGCGKTLLAKAVANESGLNFISVKGP 491 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDV------ 108 VL GPPG GKT LA +A EL + + P I +G+ L L D+ V Sbjct: 143 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCI 202 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 203 VFIDEIDAIT 212 >gi|253681306|ref|ZP_04862104.1| ATP-dependent protease, Lon family [Clostridium botulinum D str. 1873] gi|253562544|gb|EES91995.1| ATP-dependent protease, Lon family [Clostridium botulinum D str. 1873] Length = 635 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 81/211 (38%), Gaps = 60/211 (28%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 LS N+ +S+LRP++ E GQ A +L +K + H++ GPPG+GK Sbjct: 161 LSNNI------LSMLRPKSFSEIVGQERAIKSL-----VSKLASPYPQHIILYGPPGVGK 209 Query: 68 TTLAQVVAREL------------------GVNFR------------STSGPVIAKAG-DL 96 TT A++ E+ G R S P+ + DL Sbjct: 210 TTAARLALEEVKKINHTPFDEDGKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDL 269 Query: 97 AAL--------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSV 147 A + L VLFIDEI L I++ L +ED +++ P ++ Sbjct: 270 AEIGVPEPKPGLVTEAHGGVLFIDEIGELDDILQNKLLKVLEDKRVEFSSSYYDPDDENI 329 Query: 148 KINL---------SRFTLIAATTRVGLLTNP 169 + + F LI ATTR NP Sbjct: 330 PKYIKYLFENGAPADFVLIGATTREPKDINP 360 >gi|242091720|ref|XP_002436350.1| hypothetical protein SORBIDRAFT_10g000870 [Sorghum bicolor] gi|241914573|gb|EER87717.1| hypothetical protein SORBIDRAFT_10g000870 [Sorghum bicolor] Length = 775 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 22/127 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107 +L GPPG GKTTLA +A E GV F S P + +G A N+ Sbjct: 233 LLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVV-SGVSGASEENIRGLFQKAYRTAPS 291 Query: 108 VLFIDEIHRLSIIVEEI-----------LYPAMEDFQLDLMVGEGP-SARSVKINLSRFT 155 ++FIDEI ++ E + L M+ F ++ G G A S + Sbjct: 292 IVFIDEIDAIASKRENLQREMERRIVTQLMTCMDQFHQNIGSGSGNLDAESSEKKPGYVI 351 Query: 156 LIAATTR 162 +I AT R Sbjct: 352 VIGATNR 358 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 19/31 (61%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 L GPPG GKT +A+ VA E G NF GP Sbjct: 538 LLFGPPGCGKTLIAKAVAHEAGANFIHIKGP 568 >gi|213406794|ref|XP_002174168.1| peroxisomal biogenesis factor 6 [Schizosaccharomyces japonicus yFS275] gi|212002215|gb|EEB07875.1| peroxisomal biogenesis factor 6 [Schizosaccharomyces japonicus yFS275] Length = 941 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA EL +NF S GP Sbjct: 676 ILLYGPPGTGKTLLAKAVASELSLNFLSIKGP 707 >gi|113206112|ref|NP_001038129.1| transitional endoplasmic reticulum ATPase [Gallus gallus] gi|53126280|emb|CAG30944.1| hypothetical protein RCJMB04_1c3 [Gallus gallus] gi|90990971|dbj|BAE92937.1| valosin containing protein [Gallus gallus] Length = 806 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|73971230|ref|XP_866191.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 12 [Canis familiaris] Length = 819 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|325181066|emb|CCA15478.1| replication factor C subunit 4 putative [Albugo laibachii Nc14] Length = 333 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP+ + + + Q + L+ I + + L H+LF GPPG GKT+ VAREL Sbjct: 13 IEKYRPKVINDISHQEHVVATLRQSIASGQ-----LPHLLFYGPPGTGKTSTIVAVAREL 67 Query: 79 -GVNFRST 85 G +FR Sbjct: 68 YGNDFRKN 75 >gi|315108936|gb|EFT80912.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL030PA2] Length = 429 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 37/135 (27%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFI---------EAAKARAE---------ALDHV 57 L RPR L EF GQ EA L V + EA RA ++ Sbjct: 62 LPRPRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNI 121 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103 L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181 Query: 104 EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 182 AERGIVYIDEIDKVA 196 >gi|313682964|ref|YP_004060702.1| ATP-dependent clp protease ATP-binding subunit clpx [Sulfuricurvum kujiense DSM 16994] gi|313155824|gb|ADR34502.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfuricurvum kujiense DSM 16994] Length = 410 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 66/150 (44%), Gaps = 32/150 (21%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEEFTGQ-------------VEACSNLKVFIEAAKA 49 D EG + V ++A+ LL P+ L F GQ V ++ K + Sbjct: 42 DSEGEGTAAVEHKNAE--LLTPKELNTFLGQYIIGQDRARKLLSVAVYNHYKRIFKHTVV 99 Query: 50 RAE---ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTN 102 E A +VL +GP G GKT +AQ +AR L V + +AG D+ +LT Sbjct: 100 EDETEIAKSNVLLIGPTGSGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTK 159 Query: 103 L---EDRDV-------LFIDEIHRLSIIVE 122 L D DV +FIDEI ++S + E Sbjct: 160 LLQAADGDVERAQQGIVFIDEIDKISRMSE 189 >gi|291276286|ref|YP_003516058.1| ATP-dependent clp protease ATP-binding subunit ClpX [Helicobacter mustelae 12198] gi|290963480|emb|CBG39310.1| ATP-dependent clp protease ATP-binding subunit clpX [Helicobacter mustelae 12198] Length = 425 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 14/84 (16%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103 A ++LF+GP G GKT +AQ +A+ L V + +AG D+ +LT L Sbjct: 116 AKSNILFIGPTGSGKTLMAQTIAKALNVPIAICDATSLTEAGYVGEDVENILTRLLQAAD 175 Query: 104 -----EDRDVLFIDEIHRLSIIVE 122 R ++FIDEI ++S + E Sbjct: 176 GDVARAQRGIVFIDEIDKISRLSE 199 >gi|223993867|ref|XP_002286617.1| hypothetical protein THAPSDRAFT_267952 [Thalassiosira pseudonana CCMP1335] gi|220977932|gb|EED96258.1| hypothetical protein THAPSDRAFT_267952 [Thalassiosira pseudonana CCMP1335] Length = 811 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT +A+ VA E NF S GP Sbjct: 512 VLFYGPPGCGKTLMAKAVANECQANFISVKGP 543 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 239 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 298 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 299 IFIDEIDSIA 308 >gi|156093657|ref|XP_001612867.1| replication factor C subunit 2 [Plasmodium vivax SaI-1] gi|148801741|gb|EDL43140.1| replication factor C subunit 2, putative [Plasmodium vivax] Length = 330 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 46/228 (20%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ L++ Q A S LK + R + + H++F GPPG GKT+ +A EL Sbjct: 11 RPKKLDDIVHQTNAVSMLKEVV-----RTKNMPHLIFHGPPGTGKTSAINALAHELFGRD 65 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDE----IHRLSIIVEEILYPAMEDF------ 132 + + A D DR + + E R+SI +I E Sbjct: 66 NISERVLELNASD---------DRGINVVREKIKAYTRISISKNKINSETNETLPPWKLV 116 Query: 133 ---QLDLMVGEGPSA--RSVKI--NLSRFTLIAATTRVGLLTNPLQDRF------GIPIR 179 + D+M + SA R ++I N++RF LI + +++P+ R GIPI Sbjct: 117 VLDEADMMTEDAQSALRRIIEIYSNVTRFILIC--NYIHKISDPIYSRCSCYRFQGIPIN 174 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 + K + K G+ + D+A +I ++G R A +L+ Sbjct: 175 IK-------KDKLLYICKSEGINILDDALDKIIETTQGDLRRAVSILQ 215 >gi|118575717|ref|YP_875460.1| AAA ATPase [Cenarchaeum symbiosum A] gi|118194238|gb|ABK77156.1| AAA ATPase [Cenarchaeum symbiosum A] Length = 724 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 8/80 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD 107 E+ +L GPPG GKT +A+V+A E N S +GP I G+ A L ++ E +D Sbjct: 212 ESHSGILLYGPPGCGKTLIAKVLASESEANMYSINGPEIMNKYYGETEARLRDIFKEAKD 271 Query: 108 ----VLFIDEIHRLSIIVEE 123 ++FIDEI ++ EE Sbjct: 272 NSPSIIFIDEIDAIAPKREE 291 >gi|73971232|ref|XP_866203.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 13 [Canis familiaris] Length = 810 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|50843045|ref|YP_056272.1| ATP-dependent protease ATP-binding subunit [Propionibacterium acnes KPA171202] gi|282854722|ref|ZP_06264057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes J139] gi|61211462|sp|Q6A7F1|CLPX_PROAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|50840647|gb|AAT83314.1| ATP dependent Clp protease ATP binding subunit [Propionibacterium acnes KPA171202] gi|282582304|gb|EFB87686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes J139] gi|314923823|gb|EFS87654.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL001PA1] gi|314966163|gb|EFT10262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL082PA2] gi|314982028|gb|EFT26121.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL110PA3] gi|315090842|gb|EFT62818.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL110PA4] gi|315095054|gb|EFT67030.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL060PA1] gi|315104286|gb|EFT76262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL050PA2] gi|315106806|gb|EFT78782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL030PA1] gi|327328167|gb|EGE69936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL103PA1] Length = 429 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 37/135 (27%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFI---------EAAKARAE---------ALDHV 57 L RPR L EF GQ EA L V + EA RA ++ Sbjct: 62 LPRPRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNI 121 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103 L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181 Query: 104 EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 182 AERGIVYIDEIDKVA 196 >gi|213054513|gb|ACJ39432.1| cdc48 [Larimichthys crocea] Length = 806 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 574 LFFDELDSIA 583 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 >gi|196007494|ref|XP_002113613.1| hypothetical protein TRIADDRAFT_57218 [Trichoplax adhaerens] gi|190584017|gb|EDV24087.1| hypothetical protein TRIADDRAFT_57218 [Trichoplax adhaerens] Length = 943 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ VA E +NF S GP Sbjct: 703 LLFYGPPGTGKTLLAKAVATECSLNFLSVKGP 734 >gi|148670554|gb|EDL02501.1| valosin containing protein, isoform CRA_b [Mus musculus] Length = 822 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 530 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 589 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 590 LFFDELDSIA 599 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 257 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 290 >gi|262066195|ref|ZP_06025807.1| DNA polymerase III, gamma and tau subunit [Fusobacterium periodonticum ATCC 33693] gi|291380102|gb|EFE87620.1| DNA polymerase III, gamma and tau subunit [Fusobacterium periodonticum ATCC 33693] Length = 482 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 32/227 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + E +G+ E +LK+ ++ K+ A A LF GP G+GKTT+A+++A+ GVN Sbjct: 10 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63 Query: 83 RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + G + + A+ L ++ IDEI L E+I Y +E + Sbjct: 64 LNLGEDGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120 Query: 134 LDLMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF-- 182 ++ E N S I ATT + + + R R +F Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISRCQ---RYDFKA 177 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 +IED+K+ ++ K L+++DE I S G+ R + +L R+ Sbjct: 178 LDIEDMKSGLKHILKEENLSMSDEVYPLIYENSSGSMRDSISILERL 224 >gi|255076839|ref|XP_002502086.1| predicted protein [Micromonas sp. RCC299] gi|226517351|gb|ACO63344.1| predicted protein [Micromonas sp. RCC299] Length = 543 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 44/92 (47%), Gaps = 9/92 (9%) Query: 35 EACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 EA + + EA A+ A+ VL GPPG KT LA+ VA E G NF S GP + Sbjct: 308 EAVEWTEKYPEAMARLGAKPPKGVLLYGPPGCSKTMLARAVASESGRNFLSVKGPELYSK 367 Query: 93 -AGDLAALLTNLEDR------DVLFIDEIHRL 117 GD + L R V+FIDEI L Sbjct: 368 WVGDSEKAVRTLFRRAKTSAPSVIFIDEIDGL 399 >gi|254514312|ref|ZP_05126373.1| AAA ATPase, central domain protein [gamma proteobacterium NOR5-3] gi|219676555|gb|EED32920.1| AAA ATPase, central domain protein [gamma proteobacterium NOR5-3] Length = 411 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 28/178 (15%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVV-----ARELGVNFRSTSGPVIAKAGDLAALLTNLE 104 + E L ++ GPPG+GKTTLAQ++ +R L ++ I +A + Sbjct: 21 QGEPLHSMILWGPPGVGKTTLAQLLCDASDSRMLKLSAVMDGVKAIREAVAVGEAERASG 80 Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR-- 162 + VLF+DE+HR + ++ P +E+ L TLI ATT Sbjct: 81 RQCVLFVDEVHRFNKSQQDAFLPFVENGTL--------------------TLIGATTENP 120 Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 L + L R + RL +++L I+ RG GL + D +A+ + G R Sbjct: 121 AFELNSALLSRARV-YRLRSLSVDELVMILHRGEIEVGLELNDLQRQRLALAADGDAR 177 >gi|126653989|ref|ZP_01725824.1| hypothetical protein BB14905_09600 [Bacillus sp. B14905] gi|126589506|gb|EAZ83649.1| hypothetical protein BB14905_09600 [Bacillus sp. B14905] Length = 420 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 49/258 (18%) Query: 22 LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP TL+E G + N ++ + E + +L G PG+GKT++A +A + Sbjct: 1 MRPLTLDEIVGHQDFIGPNTALY---KMIQNEHVPSMLLYGEPGIGKTSIANAIAGSSQL 57 Query: 81 NFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 F + + K D+ ++ + + +LF+DEIHR + + ++ L P +E+ Sbjct: 58 PFFALNATRAGKK-DVEDIVQEARISGKVLLFLDEIHRFNKLQQDTLLPHVEN------- 109 Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLKTI 191 LI ATT NP D R G +L E+L + Sbjct: 110 -------------GSIVLIGATTE-----NPYHDVNPAIRSRCGEIYQLKRLTKENLMEL 151 Query: 192 VQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 V+ RG +T IA + G R A LL + ++ +TI + Sbjct: 152 VEKALADEKRGLGKYHFVLTPSQIEHIAEAANGDARKALTLLESIYYASDEVEGQTIAAD 211 Query: 245 -IADAALLRLAI--DKMG 259 I D + R+ + DK G Sbjct: 212 HIIDHLISRIGVYGDKKG 229 >gi|126341342|ref|XP_001368768.1| PREDICTED: similar to peroxisome biogenesis disorder protein 1 isoform 1 [Monodelphis domestica] Length = 1290 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 23/32 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT +A V+ARE G+NF S GP Sbjct: 884 ILLYGPPGTGKTLIAGVIARESGMNFISIKGP 915 >gi|73971224|ref|XP_866152.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 10 [Canis familiaris] Length = 762 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 470 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 529 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 530 LFFDELDSIA 539 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 25/49 (51%) Query: 42 VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 + E + E +L GPPG GKT +A+ VA E G F +GP I Sbjct: 182 IHCEGEPIKREPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 230 >gi|330508645|ref|YP_004385073.1| AAA family ATPase [Methanosaeta concilii GP-6] gi|328929453|gb|AEB69255.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6] Length = 725 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E NF S SGP I G+ L + D + Sbjct: 218 VLLHGPPGTGKTLIARAVAGETDANFISISGPEIVSKFYGESEQRLRQIFDEASKAAPSI 277 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 278 IFIDEIDSIAPKREEV 293 >gi|317507132|ref|ZP_07964892.1| ATPase [Segniliparus rugosus ATCC BAA-974] gi|316254578|gb|EFV13888.1| ATPase [Segniliparus rugosus ATCC BAA-974] Length = 449 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 17/109 (15%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107 V+ GPPG GKTT+A +++ G F + S A + + +ED R Sbjct: 48 VVLHGPPGTGKTTIASLLSSATGREFVALS----ALTAGVKEVREVIEDARMRLAAGVRT 103 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSR 153 VLFIDE+HR S ++ L A+E Q+ L+V E P V LSR Sbjct: 104 VLFIDEVHRFSKTQQDALLAAVE-HQIVLLVAATTENPGFAVVSPLLSR 151 >gi|326784294|ref|YP_004324752.1| clamp loader subunit [Synechococcus phage S-SSM5] gi|310003525|gb|ADO97921.1| clamp loader subunit [Synechococcus phage S-SSM5] Length = 314 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 15/121 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T++E + K FIE + + ++L G G+GKTT+A+ + ELG ++ Sbjct: 12 RPQTVDECILPESVKTTFKSFIEQGE-----IPNLLLSGTAGVGKTTIAKALCNELGADY 66 Query: 83 RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +G V +A + AA LT VL IDE + V+ +L ++E+F Sbjct: 67 YVINGSDEGRFLDTVRNQAKNFAATVSLTASARHKVLIIDEADNTTPDVQLLLRASIEEF 126 Query: 133 Q 133 Q Sbjct: 127 Q 127 >gi|300865996|ref|ZP_07110730.1| vesicle-fusing ATPase [Oscillatoria sp. PCC 6506] gi|300335987|emb|CBN55888.1| vesicle-fusing ATPase [Oscillatoria sp. PCC 6506] Length = 611 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 +L++ G + LK + R E L+ VL VGPPG GKT A+ +A E Sbjct: 86 SLQDVGGLGQVLKELKELVAIPLKRPELLEKLGLEPTKGVLLVGPPGTGKTLTARALADE 145 Query: 78 LGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VLFIDEIHRLS 118 LGVN+ + +GP V++K G+ L + ++ ++FIDEI L+ Sbjct: 146 LGVNYIALAGPEVMSKYYGEAEQKLRAIFEKAAKNAPCLVFIDEIDSLA 194 Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101 + +A A +L GPPG GKT LA+ VA + NF +GP V A + L T Sbjct: 382 QTKAIAPRGILLWGPPGTGKTLLAKAVASQARANFICVNGPELLSRWVGASEQAVRELFT 441 Query: 102 NLEDRD--VLFIDEIHRLS 118 V+FIDEI L+ Sbjct: 442 KARQASPCVVFIDEIDSLA 460 >gi|237745424|ref|ZP_04575904.1| DNA-binding ATP-dependent protease La [Oxalobacter formigenes HOxBLS] gi|229376775|gb|EEO26866.1| DNA-binding ATP-dependent protease La [Oxalobacter formigenes HOxBLS] Length = 815 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 41/229 (17%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S + DI+ R E+ G + + F+ K E +L FVGPPG+GKT+L Sbjct: 337 SDDRTDINEARQILDEDHYGLEKVKKRILEFLAVHKLNPEGKSPLLCFVGPPGVGKTSLG 396 Query: 72 QVVARELGVNF-RSTSGPVIAKA-------GDLAALLTNL--------EDRDVLFIDEIH 115 Q +AR G F R + G V +A + AL N+ + V+ +DE+ Sbjct: 397 QSIARATGRKFVRVSMGGVHDEAEIRGHRRTYIGALPGNIIQAIRRAGTNNCVMLLDEVD 456 Query: 116 RLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 +L V+ E+L PA D + +V +LS+ I + Sbjct: 457 KLGSGVQGDPSAALLEVLDPAQNSTFRDNYL-------AVPFDLSKVMFICTANMPDTIP 509 Query: 168 NPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEAACEI 211 PL+DR + I+L Y ++ L+ +++R + GL + CEI Sbjct: 510 GPLRDRLEM-IQLPGYTEQEKTQIALRYLIRRQREENGLKPEN---CEI 554 >gi|160331231|ref|XP_001712323.1| cdc48b [Hemiselmis andersenii] gi|159765770|gb|ABW97998.1| cdc48b [Hemiselmis andersenii] Length = 780 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 501 VLFYGPPGCGKTLLAKAIANECQANFISIKGP 532 Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 28/134 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108 +L GPPG GKT +A+ VA E G +GP I +L E + Sbjct: 228 ILMYGPPGSGKTLIARAVANEAGAFLFVINGPEIMSKLSGESESNLRKAFEEAEKNSPSI 287 Query: 109 LFIDEIHRLSII-------VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161 +FIDEI L+ VE+ + + L LM G P ++ V +IA T Sbjct: 288 IFIDEIDSLAPKRDKTQGEVEKKIVSQL----LTLMDGISPKSQVV--------VIACTN 335 Query: 162 RVGLLTNPLQDRFG 175 R + +P RFG Sbjct: 336 RPNSI-DPSLRRFG 348 >gi|156742142|ref|YP_001432271.1| ATP-dependent protease La [Roseiflexus castenholzii DSM 13941] gi|156233470|gb|ABU58253.1| ATP-dependent protease La [Roseiflexus castenholzii DSM 13941] Length = 821 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 32/160 (20%) Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNL 103 FVGPPG+GKT+L Q +AR LG F R + G V +A G L L Sbjct: 365 FVGPPGVGKTSLGQSIARALGRQFARMSLGGVRDEAELRGFRRTYIGSQPGRLIQELRRA 424 Query: 104 EDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 D VL +DEI +L + + E+L P D D + +V +LS+ Sbjct: 425 GTSDPVLLLDEIDKLGHDYRGDPAAALLEVLDPEQNDTFTDHYL-------NVPFDLSKV 477 Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 IA + + L+DR + I L+ Y ++ I QR Sbjct: 478 LFIATANTMDTVPPALRDRMEV-IELSGYTGDEKVHIAQR 516 >gi|319937422|ref|ZP_08011829.1| ATP-dependent protease La [Coprobacillus sp. 29_1] gi|319807788|gb|EFW04381.1| ATP-dependent protease La [Coprobacillus sp. 29_1] Length = 774 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + VGPPG+GKT++++ +AR LG F +++ G V +A G L ++ R Sbjct: 353 ICLVGPPGVGKTSISKSIARALGRKFVKASLGGVKDEAEIRGHRRTYLGSMPGRIIQSMK 412 Query: 107 ------DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V +DEI ++S + E+L P F D + E +LS Sbjct: 413 KAGVINPVFLLDEIDKMSSDYKGDPTSAMLEVLDPEQNQFFSDNYLEE-------PYDLS 465 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + IA +G + PL+DR I I ++ Y ++ I +R Sbjct: 466 KVLFIATANDLGSIPEPLRDRLEI-IEISSYTEQEKLEIAKR 506 >gi|308480473|ref|XP_003102443.1| CRE-MAC-1 protein [Caenorhabditis remanei] gi|308261175|gb|EFP05128.1| CRE-MAC-1 protein [Caenorhabditis remanei] Length = 841 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 587 ILLCGPPGCGKTLLAKSVANETGMNFISVKGP 618 >gi|297569272|ref|YP_003690616.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfurivibrio alkaliphilus AHT2] gi|296925187|gb|ADH85997.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfurivibrio alkaliphilus AHT2] Length = 419 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 31/134 (23%) Query: 16 DADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA------------LDHVL 58 D+ + LL+P ++E GQ A +L V + R E ++L Sbjct: 57 DSGVPLLKPSEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGDLEGDYQDVELQKSNIL 116 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------E 104 +GP G GKT LAQ +AR L V F + +AG D+ +L +L Sbjct: 117 LIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVSLLQAADNDVERA 176 Query: 105 DRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 177 SRGIVYIDEIDKIA 190 >gi|297561877|ref|YP_003680851.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846325|gb|ADH68345.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 428 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 36/150 (24%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKV--FIEAAKARAE- 52 M + EG+L S+ D D SL +PR + EF GQ +A L V + + R+E Sbjct: 47 MEEEEGVLP---SEADWD-SLPKPREIYEFLDSYVIGQEQAKKALSVAVYNHYKRVRSEG 102 Query: 53 ----------ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN 102 A ++L +GP G GKT LAQ +AR L V F + +AG + + N Sbjct: 103 DRPGEEDVEIAKSNILLLGPTGSGKTLLAQTLARILNVPFAIADATALTEAGYVGEDVEN 162 Query: 103 L-------EDRDV-------LFIDEIHRLS 118 + D DV ++IDE+ +++ Sbjct: 163 ILLKLIQAADYDVKKAETGIIYIDEVDKVA 192 >gi|50552452|ref|XP_503636.1| YALI0E06655p [Yarrowia lipolytica] gi|49649505|emb|CAG79218.1| YALI0E06655p [Yarrowia lipolytica] Length = 774 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 9/80 (11%) Query: 18 DISLLRPRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKT 68 +I L +P T + GQ LK +E +A+ + + VL GPPG KT Sbjct: 500 EIFLEKPSTTWSDIGGQSGVKEKLKQMVEWPLTKADTMKNLGITPPRGVLLYGPPGCSKT 559 Query: 69 TLAQVVARELGVNFRSTSGP 88 +A+ +A E G+NF S GP Sbjct: 560 LIAKALANESGLNFLSVKGP 579 >gi|15643274|ref|NP_228318.1| recombination factor protein RarA/unknown domain fusion protein [Thermotoga maritima MSB8] gi|20178177|sp|Q9WYX8|Y508_THEMA RecName: Full=UPF0189 protein TM_0508 gi|4981020|gb|AAD35593.1|AE001727_5 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 599 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 60/140 (42%), Gaps = 9/140 (6%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79 LLRP+ E+F GQ N + K +L+ GPPG GKT++ ++ R Sbjct: 11 LLRPKDFEDFVGQDHIFGNKGILRRTLKT-GNMFSSILY-GPPGSGKTSVFSLLKRYFNG 68 Query: 80 --VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133 V ST V I L + +LF+DEIHRL+ + +L +E D Sbjct: 69 EVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLVSHVERGDIV 128 Query: 134 LDLMVGEGPSARSVKINLSR 153 L E PS V LSR Sbjct: 129 LVATTTENPSFVIVPALLSR 148 >gi|324514039|gb|ADY45741.1| RuvB-like protein 1 [Ascaris suum] Length = 491 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 30/50 (60%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQ+EA + +E ++R A +LF GPPG GKT +A +A ELG Sbjct: 54 FIGQLEAREAAGIIVEMIRSRRMAGRAILFAGPPGTGKTAIALAMAHELG 103 >gi|323705367|ref|ZP_08116942.1| stage V sporulation protein K [Thermoanaerobacterium xylanolyticum LX-11] gi|323535269|gb|EGB25045.1| stage V sporulation protein K [Thermoanaerobacterium xylanolyticum LX-11] Length = 296 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 104/248 (41%), Gaps = 68/248 (27%) Query: 56 HVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDLAA---------LLTNLED 105 H++F G PG GKTT+A+++ + L G+ + V + DL + N++ Sbjct: 78 HMVFKGNPGTGKTTVARILGKLLKGIGVLNKGHVVEVERADLVGEYIGHTAHRVQENVKK 137 Query: 106 R--DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 +LF+DE + L+ E + L AMED++ +F Sbjct: 138 ALGGILFVDEAYSLARGGEKDFGKEAIDTLVKAMEDYK------------------DQFV 179 Query: 156 LIAATTR----VGLLTNP-LQDRFGIPIRLNF--YEIEDLKTIVQRGAKLTGLAVTDEAA 208 LI A R L TNP L+ RF PI+++F Y I++L I + K +TD A Sbjct: 180 LILAGYRDEMEYFLNTNPGLRSRF--PIQIDFPDYTIDELLRIAELMTKNRQYVLTDSAK 237 Query: 209 CEI--------AMRSRGTPRIAGRLLRRV--RDFAEVAHAKTITREIADAALLRLAIDKM 258 +I R G R+ ++ R + V + KTIT++ D M Sbjct: 238 RKIMKVLINDNTTREIGNARLVRNIIERAIRKQAVRVINKKTITKD-----------DLM 286 Query: 259 GFDQLDLR 266 D +D+R Sbjct: 287 IIDSIDIR 294 >gi|260433268|ref|ZP_05787239.1| putative Cell division protease FtsH family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417096|gb|EEX10355.1| putative Cell division protease FtsH family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 610 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 15/107 (14%) Query: 26 TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + ++ G EA + L+ +E K A +L VGPPG GKT LA+ VA E Sbjct: 154 SFDDVAGVDEAKAELQEVVEFLKDPEAYGKLGAHVPKGILLVGPPGTGKTLLARAVAGEA 213 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRL 117 GV F S SG + G AA + +L D+ ++FIDE+ L Sbjct: 214 GVTFFSISGSEFVEMFVGVGAARVRDLFDQARKSAPAIIFIDELDAL 260 >gi|138896137|ref|YP_001126590.1| recombination factor protein RarA [Geobacillus thermodenitrificans NG80-2] gi|196250090|ref|ZP_03148784.1| AAA ATPase central domain protein [Geobacillus sp. G11MC16] gi|134267650|gb|ABO67845.1| ATPase, AAA family [Geobacillus thermodenitrificans NG80-2] gi|196210274|gb|EDY05039.1| AAA ATPase central domain protein [Geobacillus sp. G11MC16] Length = 431 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 11/114 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE---- 77 +RPRT+++ GQ + K + +L G PG GKT+LA +AR Sbjct: 12 MRPRTIDDIVGQEHIIGPETPLYKMIKK--GYVPSLLLYGEPGTGKTSLAYAIARTAERE 69 Query: 78 -LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 + +N S I +A + A N+ +LFIDEIHRL+ +++L P +E Sbjct: 70 LIAINATSAGKKEIEEAAEAARWSGNV----LLFIDEIHRLNKAQQDVLLPHLE 119 >gi|314919375|gb|EFS83206.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL050PA1] Length = 429 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 37/135 (27%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFI---------EAAKARAE---------ALDHV 57 L RPR L EF GQ EA L V + EA RA ++ Sbjct: 62 LPRPRELCEFLDASVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNI 121 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103 L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181 Query: 104 EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 182 AERGIVYIDEIDKVA 196 >gi|237839531|ref|XP_002369063.1| replication factor C small subunit, putative [Toxoplasma gondii ME49] gi|211966727|gb|EEB01923.1| replication factor C small subunit, putative [Toxoplasma gondii ME49] gi|221483291|gb|EEE21610.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Toxoplasma gondii GT1] gi|221507780|gb|EEE33367.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Toxoplasma gondii VEG] Length = 357 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR +E+ QVE L+ +E + H+LF GPPG GKT+ A + REL Sbjct: 38 RPRRVEDMAHQVEPKKMLRRILETGN-----MPHLLFYGPPGTGKTSAALALVREL 88 >gi|163815264|ref|ZP_02206641.1| hypothetical protein COPEUT_01424 [Coprococcus eutactus ATCC 27759] gi|158449459|gb|EDP26454.1| hypothetical protein COPEUT_01424 [Coprococcus eutactus ATCC 27759] Length = 457 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 28/129 (21%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGPP 63 D++LL+P+ ++ F GQ EA L V + R A ++L VGP Sbjct: 79 DVNLLKPKEIKSFLDEYVIGQEEAKKVLAVAVYNHYKRILAQKDFDVELQKSNILMVGPT 138 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------VL 109 G GKT LAQ +A+ L V F + +AG D+ +L L D D ++ Sbjct: 139 GSGKTYLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDIERAEHGII 198 Query: 110 FIDEIHRLS 118 +IDEI +++ Sbjct: 199 YIDEIDKIT 207 >gi|115918066|ref|XP_785648.2| PREDICTED: similar to Nuclear VCP-like [Strongylocentrotus purpuratus] gi|115960912|ref|XP_001195929.1| PREDICTED: similar to Nuclear VCP-like [Strongylocentrotus purpuratus] Length = 742 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ +A E G+NF S GP Sbjct: 570 ILLAGPPGCGKTLLAKAIANESGINFISVKGP 601 >gi|86158132|ref|YP_464917.1| ATP-dependent protease La [Anaeromyxobacter dehalogenans 2CP-C] gi|123497699|sp|Q2IIK1|LON_ANADE RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|85774643|gb|ABC81480.1| ATP-dependent protease La [Anaeromyxobacter dehalogenans 2CP-C] Length = 843 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 98/242 (40%), Gaps = 57/242 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L Q +AR G F R + G V +A G + L R Sbjct: 384 LCFVGPPGVGKTSLGQSIARATGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRIIQSMK 443 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 V+ +DEI +L S + E+L P A D LDL Sbjct: 444 KAATVNPVMMLDEIDKLGADFRGDPSAALLEVLDPEQNHAFSDHYLDL-----------S 492 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ----------RGAKL 198 +LS+ I + + PL+DR I + L Y E+ I Q G Sbjct: 493 YDLSKVMFIGTANLLDPIPGPLKDRMEI-LELPGYTFEEKVHIAQNHLIPKQLREHGLSA 551 Query: 199 TGLAVTDEAACEIAM---RSRGTPRIAGRLLRRVRDFA-EVAHAK---TITREIADAALL 251 +A++++A +I M R G + R+ R A EVA K + R I +A +L Sbjct: 552 DAIAISEKALIKIIMAYTREAGVRNLERRIADVCRAIAVEVASGKIGASAKRSIEEADVL 611 Query: 252 RL 253 + Sbjct: 612 EI 613 >gi|254884991|ref|ZP_05257701.1| ATP-dependent Clp protease [Bacteroides sp. 4_3_47FAA] gi|319640393|ref|ZP_07995117.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_40A] gi|254837784|gb|EET18093.1| ATP-dependent Clp protease [Bacteroides sp. 4_3_47FAA] gi|317387996|gb|EFV68851.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_40A] Length = 742 Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69 +++A + L R + GQ EA + ++ AKA + L +LFVGP G+GKT Sbjct: 438 EDNATLETLYERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497 Query: 70 LAQVVARELGV 80 +A+V+A ELG+ Sbjct: 498 VAKVLASELGI 508 >gi|170577995|ref|XP_001894218.1| replication factor C, 37kDa subunit [Brugia malayi] gi|158599258|gb|EDP36928.1| replication factor C, 37kDa subunit, putative [Brugia malayi] Length = 315 Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 8/67 (11%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RPR +EE Q E S LK ++ A L ++LF GPPG GKT+ A + R+L Sbjct: 24 VEKYRPRKVEEVAFQNEVVSVLKKVLQGAD-----LPNLLFYGPPGTGKTSAAIALCRQL 78 Query: 79 GVNFRST 85 FR+T Sbjct: 79 ---FRNT 82 >gi|186682508|ref|YP_001865704.1| ATPase [Nostoc punctiforme PCC 73102] gi|186464960|gb|ACC80761.1| AAA ATPase, central domain protein [Nostoc punctiforme PCC 73102] Length = 607 Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL VGPPG GKT A+V+A EL +N+ + +GP V++K G+ A L ++ ++ + Sbjct: 123 VLLVGPPGTGKTLTARVLAEELELNYIAINGPEVMSKYYGEAEARLRSIFEKATRSAPCL 182 Query: 109 LFIDEIHRLS 118 +FIDEI L+ Sbjct: 183 IFIDEIDSLA 192 >gi|299856777|pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain gi|299856778|pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain gi|299856779|pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain gi|299856780|pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain gi|299856781|pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain gi|299856782|pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain Length = 543 Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 58/197 (29%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPV-------IA 91 + GPPG+GKT+LA+ +A+ LG F R+ G + + Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170 Query: 92 KAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPS 143 KAG L V +DEI ++ S + E+L P D + E Sbjct: 171 KAGKL---------NPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEE--- 218 Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQR 194 +LS+ IA + + PL+DR I + EIE L K I + Sbjct: 219 ----TFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEH 274 Query: 195 GAKLTGLAVTDEAACEI 211 G K + L + D+A +I Sbjct: 275 GLKKSNLQLRDQAILDI 291 >gi|308808470|ref|XP_003081545.1| cell division protein FtsH (ISS) [Ostreococcus tauri] gi|116060010|emb|CAL56069.1| cell division protein FtsH (ISS) [Ostreococcus tauri] Length = 966 Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 15/119 (12%) Query: 11 NVSQEDADISLLRPRTLEEFTG-------QVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 N++ D ++ + +L++ +G +E S LK F + A VL GPP Sbjct: 351 NMTTRQYDSTVRQGMSLKDISGIDTVKEEMLELISYLKDFDKYNSMGARIPAGVLLCGPP 410 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 G GKT LA+ VA E GV F S +G + G AA + NL D+ ++FIDE Sbjct: 411 GTGKTLLARCVAGEAGVPFFSCAGTEFMEMFVGVGAARIRNLFDQAKKVAPCIIFIDEF 469 >gi|326693436|ref|ZP_08230441.1| DNA polymerase III subunits gamma and tau [Leuconostoc argentinum KCTC 3773] Length = 589 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 29/119 (24%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELG 79 + RPRT ++ GQ LK IE E H LF GP G GKT+ A++ ARE+ Sbjct: 9 VYRPRTFDDMIGQEVITQTLKNAIET-----EQTGHAYLFSGPRGTGKTSAAKIFAREVN 63 Query: 80 --------------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLS 118 V F + S ++ D+ +L N++ V IDE+H LS Sbjct: 64 GIDPQTDDAQIPDIVEFDAASN---SRVEDMRDILANVDYAPIEAKYKVYIIDEVHMLS 119 >gi|156368649|ref|XP_001627805.1| predicted protein [Nematostella vectensis] gi|156214725|gb|EDO35705.1| predicted protein [Nematostella vectensis] Length = 613 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ +A E G+NF S GP Sbjct: 327 ILLAGPPGCGKTLLAKAIANESGINFISVKGP 358 >gi|46446096|ref|YP_007461.1| putative endopeptidase (ATP-dependent serine protease) La [Candidatus Protochlamydia amoebophila UWE25] gi|81829044|sp|Q6ME13|LON_PARUW RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|46399737|emb|CAF23186.1| putative endopeptidase (ATP-dependent serine protease) La [Candidatus Protochlamydia amoebophila UWE25] Length = 835 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 70/303 (23%), Positives = 122/303 (40%), Gaps = 55/303 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 + VGPPG+GKT++ + +AR L F S V A G + L Sbjct: 383 ICLVGPPGVGKTSIGKSIARALNRKFYRFSVGGMRDEAEIKGHRRTYVGAMPGKMIQALK 442 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + + V+ +DE+ ++ + E+L P LD + V+ NLS Sbjct: 443 YCQTMNPVIMLDEVDKMGKSFQGDPASALLEVLDPEQNAEFLDHYL-------DVRCNLS 495 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEA 207 I + + PL+DR I +RL+ Y +++ K ++ R K GL + + Sbjct: 496 EVLFIVTANVLDTIPEPLKDRMDI-LRLSGYIMQEKLEIAKKYLIPRNRKEMGLKALEVS 554 Query: 208 ACEIAMRS--RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265 + A+RS G R +G VR+ + K I R++A ++R ++ D Sbjct: 555 FTQEALRSIINGYARESG-----VRNLENL--LKKILRKLA-VNIVREQ------EEHDK 600 Query: 266 RYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325 + P+ ++ P + + L +P F +RTP G + M +AW Sbjct: 601 EQAKKKKSSRSKKPIAFVPTKHSIT-PSNLKDFLGKPVFTSDRFYERTPVG-VCMGLAWT 658 Query: 326 HLG 328 +G Sbjct: 659 AMG 661 >gi|124511780|ref|XP_001349023.1| cell division cycle ATPase, putative [Plasmodium falciparum 3D7] gi|45645005|sp|P46468|CDAT_PLAF7 RecName: Full=Putative cell division cycle ATPase gi|23498791|emb|CAD50861.1| cell division cycle ATPase, putative [Plasmodium falciparum 3D7] Length = 1229 Score = 43.9 bits (102), Expect = 0.031, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E NF S GP + G+ A + +L D+ + Sbjct: 971 ILLYGPPGCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCI 1030 Query: 109 LFIDEIHRLS 118 +F DEI L+ Sbjct: 1031 IFFDEIDSLA 1040 >gi|294101376|ref|YP_003553234.1| AAA family ATPase, CDC48 subfamily [Aminobacterium colombiense DSM 12261] gi|293616356|gb|ADE56510.1| AAA family ATPase, CDC48 subfamily [Aminobacterium colombiense DSM 12261] Length = 706 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E V F SGP +I K G+ L N+ D + Sbjct: 213 VLLYGPPGTGKTVIARAVANETDVYFTHISGPEIIGKFYGESEERLRNVFDEAQAHAPAI 272 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 273 IFIDEIDAIAPKREEM 288 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GP G GKT L + +A E GVNF GP + Sbjct: 488 ILLHGPSGTGKTLLVRALAHESGVNFIPVKGPAL 521 >gi|268608356|ref|ZP_06142083.1| hypothetical protein RflaF_02525 [Ruminococcus flavefaciens FD-1] Length = 606 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 50/105 (47%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +T E+ GQ EA LK ++ A+ A L VGPPG GKT LAQ VA E Sbjct: 160 KTFEDVAGQDEAKEALKEIVDFLHDPGKYAEIGANLPKGALLVGPPGTGKTLLAQAVAGE 219 Query: 78 LGVNFRSTSGPVIAK--AGDLAALLTNLEDRDV------LFIDEI 114 V F S SG + G AA + +L + V +FIDEI Sbjct: 220 AEVPFFSISGSEFVEMFVGMGAAKVRDLFSQAVEKAPCIVFIDEI 264 >gi|301113936|ref|XP_002998738.1| peroxisome biogenesis factor, putative [Phytophthora infestans T30-4] gi|262112039|gb|EEY70091.1| peroxisome biogenesis factor, putative [Phytophthora infestans T30-4] Length = 1103 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA VA E G+NF S GP + Sbjct: 840 MLLYGPPGCGKTLLASAVAHECGLNFISVKGPEV 873 >gi|225620632|ref|YP_002721890.1| ATP-dependent protease La [Brachyspira hyodysenteriae WA1] gi|225215452|gb|ACN84186.1| ATP-dependent protease La [Brachyspira hyodysenteriae WA1] Length = 841 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 84/336 (25%), Positives = 128/336 (38%), Gaps = 69/336 (20%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 ++E DIS + + G + + F+ K E +L FVGPPG+GKT++ Sbjct: 346 NKEREDISKSKKILDRDHYGLEDVKERIYEFLAVRKLNPEKKSSILCFVGPPGVGKTSIG 405 Query: 72 QVVARELGVNF------------------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113 + +A L F R+ G + K + AL VL +DE Sbjct: 406 KSIAEALDRPFFRFSLGGMRDEAEIKGHRRTYIGAMPGKI--IEALKIVKVKNPVLMLDE 463 Query: 114 IHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161 I +L + E+L P + D LDL +LS I Sbjct: 464 IDKLGTSFQGDPSSALLEVLDPEQNASFRDHYLDL-----------PFDLSNVLFITTAN 512 Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAV-----TDEAACEI 211 + + PL DR + IRL+ Y +E+ K I+ R K GL + T++A I Sbjct: 513 TLDTIPRPLLDRMEV-IRLSGYIMEEKLKIASKYIIPRQVKAHGLDIKNINFTNKAISAI 571 Query: 212 ---AMRSRGTPRIAGRLLRRVRDFAE--VAHAKTITREIAD----AALLRLAIDKMGFDQ 262 R G R+ R R A V H K I D L+ I F + Sbjct: 572 IDGYAREAGVRNFERRIERICRKIAADIVEHNKKTYSYIVDEKDLEKYLKKPIFTEDFTE 631 Query: 263 LDLR---YLTMIARNFGGGPVGIETISAGLSEPRDA 295 DL+ + + + GG + IE+I +SE +D+ Sbjct: 632 KDLKPGNSIGLAWTSLGGATLTIESIK--VSEKKDS 665 >gi|163756060|ref|ZP_02163176.1| DNA polymerase III subunit gamma/tau [Kordia algicida OT-1] gi|161323934|gb|EDP95267.1| DNA polymerase III subunit gamma/tau [Kordia algicida OT-1] Length = 587 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 101/238 (42%), Gaps = 41/238 (17%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T ++ GQ +A +N +E A R+ +LF GP G+GKTT A+++A++ +N Sbjct: 12 RPQTFKDVVGQ-QAITNT---LENAIERSHLAQALLFCGPRGVGKTTCARILAKK--INQ 65 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------------SIIVEEILYPA 128 T P D A + L+ +D+I L I++E+ + Sbjct: 66 DGTENP----DEDFAFNIFELDAASNNSVDDIRSLIEQVRIPPQVGKYKVYIIDEVHMLS 121 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI--E 186 F L E P ++ I ATT + + R I +F I + Sbjct: 122 QAAFNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI---FDFKRIGVK 170 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 D K ++ A+ G+ D+A IA ++ G R A + RV F+ K +TR+ Sbjct: 171 DAKEYLKYIAESQGVEADDDALHIIAQKADGAMRDALSIFDRVVSFS----GKQLTRQ 224 >gi|154308912|ref|XP_001553791.1| hypothetical protein BC1G_07984 [Botryotinia fuckeliana B05.10] gi|150852610|gb|EDN27802.1| hypothetical protein BC1G_07984 [Botryotinia fuckeliana B05.10] Length = 399 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 183 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 226 >gi|119578807|gb|EAW58403.1| valosin-containing protein, isoform CRA_a [Homo sapiens] Length = 632 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 469 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 528 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 529 LFFDELDSIA 538 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 196 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 255 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 256 IFIDELDAIA 265 >gi|78224405|ref|YP_386152.1| Lon-A peptidase [Geobacter metallireducens GS-15] gi|123570864|sp|Q39QP7|LON_GEOMG RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|78195660|gb|ABB33427.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16 [Geobacter metallireducens GS-15] Length = 823 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 33/177 (18%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA------- 93 F+ K R + +L FVGPPG+GKT+L + +AR +G F R + G V +A Sbjct: 350 FLAVRKLRKKMKGPILCFVGPPGVGKTSLGKSIARAMGRKFVRISLGGVRDEAEIRGHRR 409 Query: 94 ---GDLAA-LLTNLE----DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137 G L ++ L+ + V +DE+ +L S + E+L P D Sbjct: 410 TYVGALPGRIIQGLKQAGSNNPVFMLDELDKLGADFRGDPSSALLEVLDPEQNHMFSDHY 469 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + ++ NLS IA ++ + PL+DR + I+L+ Y E+ I +R Sbjct: 470 I-------NLPFNLSNVMFIATANQIDTVPGPLRDRMEV-IQLSGYTEEEKLEIAKR 518 >gi|11499681|ref|NP_070923.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304] gi|2648442|gb|AAB89157.1| cell division control protein 48, AAA family (cdc48-2) [Archaeoglobus fulgidus DSM 4304] Length = 811 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E+G +F + +GP I G+ L + + + Sbjct: 234 VLLYGPPGTGKTLIAKAVANEIGASFFTINGPEIMSKFYGESEQRLREIFEEAKENAPSI 293 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 294 IFIDEIDSIAPKREEV 309 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 19/31 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT +A+ VA E NF S G Sbjct: 571 VLLYGPPGTGKTLIAKAVANESEANFISIKG 601 >gi|327404287|ref|YP_004345125.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fluviicola taffensis DSM 16823] gi|327319795|gb|AEA44287.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fluviicola taffensis DSM 16823] Length = 406 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 28/138 (20%) Query: 9 SRNVSQEDADISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEAL--------- 54 S VS E A +++L+P+ ++E GQ +A L V + R Sbjct: 46 STKVSSESAPVNVLKPQDIKERLDEYVIGQDDAKKTLSVAVYNHYKRLHQTKIEDVEIEK 105 Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL------- 103 +V+ VG G GKT LA+ +A+ L V F V+ +AG D+ ++L+ L Sbjct: 106 SNVILVGRTGTGKTLLAKTIAKMLNVPFCIADATVLTEAGYVGEDVESILSRLLQAADYN 165 Query: 104 ---EDRDVLFIDEIHRLS 118 ++FIDEI +++ Sbjct: 166 VQAAQHGIVFIDEIDKIA 183 >gi|325270324|ref|ZP_08136929.1| ATP-dependent metalloprotease FtsH [Prevotella multiformis DSM 16608] gi|324987268|gb|EGC19246.1| ATP-dependent metalloprotease FtsH [Prevotella multiformis DSM 16608] Length = 676 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 109/261 (41%), Gaps = 45/261 (17%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ A ++ +E K + D L +GPPG GKT LA+ VA E Sbjct: 190 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLIGPPGTGKTLLAKAVAGEA 249 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130 GV F S SG V A + + +++ ++FIDEI + + PAM Sbjct: 250 GVPFFSMSGSDFVEMFVGVGASRVRDVFRQAKEKAPCIIFIDEIDAVGRARSK--NPAM- 306 Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177 G R +N S ++AAT RV +L L RF Sbjct: 307 ---------GGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQ 357 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 I ++ ++ + K I Q + L E +I + +R TP +G + V + A + Sbjct: 358 IHVDLPDLTERKAIFQVHMRPLKL----ERNLDIDLLARQTPGFSGADIANVCNEAALIA 413 Query: 238 AKTITREIADAALLRLAIDKM 258 A+ +++++ L A+D++ Sbjct: 414 ARHDSKDVSKQDFLD-AVDRI 433 >gi|116754010|ref|YP_843128.1| ATPase central domain-containing protein [Methanosaeta thermophila PT] gi|116665461|gb|ABK14488.1| AAA ATPase, central domain protein [Methanosaeta thermophila PT] Length = 385 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 25/214 (11%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFI----EAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 +++ P + ++ GQ++A +KV E + + A ++LF G G GKT +A+ +A Sbjct: 130 AVVEPASFDDVVGQLDAKRKVKVIKRYLEEPERFGSWAPRNILFYGASGTGKTMIARALA 189 Query: 76 RELGVNF---RSTSGPVIAK-AGDLAALLTNLEDRD------VLFIDEIHRLSII--VEE 123 E V+ +STS +I + G+ A + +L DR ++FIDEI +++ ++ Sbjct: 190 TEANVSMMPVKSTS--LIGEFVGEGARQIHSLYDRAEQLSPCIIFIDEIDAIALDRRYQD 247 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 + E L +G S+R IAAT ++ LL ++ RF I Sbjct: 248 LRGDVSEIVNALLTEMDGISSR------RGVCTIAATNKIELLDPSIRSRFEEEIEFKLP 301 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 ED I++R A L V + A EIA + G Sbjct: 302 SHEDRLEILRRNASKMPLEVRGDLA-EIAKLTEG 334 >gi|157876732|ref|XP_001686709.1| Transitional endoplasmic reticulum ATPase; valosin-containing protein homolog [Leishmania major gi|68129784|emb|CAJ09090.1| putative Transitional endoplasmic reticulum ATPase [Leishmania major strain Friedlin] Length = 784 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 504 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 563 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 564 LFFDELDSVA 573 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 231 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSI 290 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 291 IFIDEIDSIA 300 >gi|33086608|gb|AAP92616.1| Ab2-088 [Rattus norvegicus] Length = 559 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 17/117 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108 VL GPPG GKT +A+ A+E G F + + ++ LAA + +L + + Sbjct: 309 VLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSI 368 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 +FIDEI + I EI Y DL V P A+ ++ LI T+V L Sbjct: 369 IFIDEIAKARFIT-EIYYG-------DLRVDTHP-AQETDVSTKHCFLIVKITKVKL 416 >gi|20093447|ref|NP_613294.1| DNA helicase TIP49, TBP-interacting protein [Methanopyrus kandleri AV19] gi|19886266|gb|AAM01224.1| DNA helicase TIP49, TBP-interacting protein [Methanopyrus kandleri AV19] Length = 455 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 66/155 (42%), Gaps = 27/155 (17%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--VNFRSTSG 87 GQ EA + +E K A +L VGPPG GKT +A +ARELG V F S SG Sbjct: 41 LVGQEEAREAAGIVVEMVKQGRRAGHGLLLVGPPGTGKTAIAYGIARELGEDVPFVSISG 100 Query: 88 PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE-----EILYPAMEDFQLDLMVGEGP 142 I TNL + F+ + R +I VE E++ +E +++ Sbjct: 101 SEIYG--------TNLSKTE--FLQQAIRRAIGVEFTETREVIEGKVESLEIE------- 143 Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 K LS + + + + L T RF +P Sbjct: 144 ---RAKHPLSPYMEVPSGAIIELKTQDDHRRFKVP 175 >gi|15669613|ref|NP_248426.1| replication factor C small subunit [Methanocaldococcus jannaschii DSM 2661] gi|42559435|sp|Q58817|RFCS_METJA RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit; Contains: RecName: Full=Mja RFC-1 intein; Contains: RecName: Full=Mja RFC-2 intein; Contains: RecName: Full=Mja RFC-3 intein gi|1592072|gb|AAB99433.1| activator 1 (replication factor C), 35 KD subunit [Methanocaldococcus jannaschii DSM 2661] Length = 1847 Score = 43.9 bits (102), Expect = 0.031, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 19/97 (19%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQVVA----R 76 RP+TL++ GQ E LK ++E +++ H+LF GPPG+GK T +V+ R Sbjct: 14 RPKTLDDIVGQDEIVKRLKKYVEK-----KSMPHLLFSGPPGVGKCLTGDTKVIVNGEIR 68 Query: 77 ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113 E+G S G LTN + VL IDE Sbjct: 69 EIGEVIEEISN------GKFGVTLTN--NLKVLGIDE 97 >gi|330993252|ref|ZP_08317188.1| Replication-associated recombination protein A [Gluconacetobacter sp. SXCC-1] gi|329759654|gb|EGG76162.1| Replication-associated recombination protein A [Gluconacetobacter sp. SXCC-1] Length = 463 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 19/148 (12%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP TL++ GQ + +L+ + AR +L ++ G PG+GKTT+A+++A Sbjct: 50 LRPATLDDVVGQDHLLGPQGSLRQML----ARG-SLASLILWGGPGVGKTTIARLLADAA 104 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132 G+ F S V + DL + +LF+DEIHR + ++ P +ED Sbjct: 105 GLRFVQLSA-VFSGVADLKRAFEDARRTSAQGGGTLLFVDEIHRFNRAQQDGFLPVVEDG 163 Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157 + ++VG S +N LSR ++ Sbjct: 164 TV-VLVGATTENPSFALNSALLSRCQVL 190 >gi|328767174|gb|EGF77225.1| hypothetical protein BATDEDRAFT_37479 [Batrachochytrium dendrobatidis JAM81] Length = 828 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 527 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 586 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 587 MFFDELDSIA 596 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 254 ILMFGPPGTGKTLVARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 313 Query: 109 LFIDEI 114 +FIDEI Sbjct: 314 IFIDEI 319 >gi|294893598|ref|XP_002774552.1| cell division cycle protein, putative [Perkinsus marinus ATCC 50983] gi|239879945|gb|EER06368.1| cell division cycle protein, putative [Perkinsus marinus ATCC 50983] Length = 808 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT +A+ VA E NF S GP Sbjct: 521 VLFYGPPGCGKTMMAKAVASECSANFISIKGP 552 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ +A E G F +GP V++K AG+ + L E+ + + Sbjct: 248 VLLYGPPGCGKTLIARAIANETGAFFFLINGPEVMSKMAGEAESNLRKAFEEAEKNAPAI 307 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 308 IFIDEIDSIA 317 >gi|242796075|ref|XP_002482723.1| metalloprotease m41 ftsh, putative [Talaromyces stipitatus ATCC 10500] gi|218719311|gb|EED18731.1| metalloprotease m41 ftsh, putative [Talaromyces stipitatus ATCC 10500] Length = 475 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 LF GPPG GK++L+ +A E G++ P +A DL + ++ R V+ +++I Sbjct: 254 LFYGPPGTGKSSLSLAIAGEFGLDLYEVKIPSVATDADLEQMFQDIPPRCVVLLEDI 310 >gi|198428540|ref|XP_002121499.1| PREDICTED: similar to valosin containing protein [Ciona intestinalis] Length = 808 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 515 VLFYGPPGCGKTLLAKAIANECQANFISIKGP 546 Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 242 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 275 >gi|170033703|ref|XP_001844716.1| cell division protease ftsH [Culex quinquefasciatus] gi|167874684|gb|EDS38067.1| cell division protease ftsH [Culex quinquefasciatus] Length = 757 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 19/112 (16%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTL 70 DIS+ T E+ G EA LK +E K + + VL VGPPG GKT L Sbjct: 309 DISV----TFEDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKLPKGVLLVGPPGTGKTLL 364 Query: 71 AQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 A+ VA E GV F +GP V A + L ++R V+FIDEI Sbjct: 365 ARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFIDEI 416 >gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus Y.N.15.51] gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51] Length = 330 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RPRTL++ Q E LK F+ + + + H+LF GP G GKTT A + +L G N Sbjct: 15 RPRTLDDIVNQREIIDRLKKFV-----KEKNMPHLLFAGPSGTGKTTAALALVHDLYGDN 69 Query: 82 F 82 + Sbjct: 70 Y 70 >gi|146163969|ref|XP_001012750.2| ATPase, AAA family protein [Tetrahymena thermophila] gi|146145857|gb|EAR92505.2| ATPase, AAA family protein [Tetrahymena thermophila SB210] Length = 719 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 20/176 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-----VIAKAGDLAALLTNLEDR---DV 108 +L GPPG GKT + + +A + G F S S I + + +L L + V Sbjct: 471 LLLFGPPGTGKTMIGKAIANQSGSTFFSISASSLTSKYIGEGEKMVKILFKLAEMRQPSV 530 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGLLT 167 +FIDEI L +E A + + +V EG ++R R LI AT R L Sbjct: 531 IFIDEIDSLLCARQENENEASRRIKTEFLVQMEGATSREE----VRLLLIGATNRPQELD 586 Query: 168 NPLQDRF----GIPIRLNFYEIEDL--KTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 + ++ RF IP+ N E L + I + AK ++D+ E+ ++G Sbjct: 587 DAVRRRFVKKLYIPL-PNMVAREQLIRRVIERESAKGNAFDMSDQDILEVVQATKG 641 >gi|20093924|ref|NP_613771.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19] gi|19886871|gb|AAM01701.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19] Length = 1249 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E G F S +GP I Sbjct: 252 VLLYGPPGTGKTLLAKAVANECGAKFYSINGPEI 285 Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E NF + GP + Sbjct: 594 ILLYGPPGTGKTLLAKAVANESDANFIAVRGPEV 627 >gi|332830358|gb|EGK02986.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dysgonomonas gadei ATCC BAA-286] Length = 411 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +++ VGP G GKT LA+ +A+ L V F V+ +AG D+ ++LT L Sbjct: 110 NIILVGPTGTGKTLLARTIAKMLHVPFAIVDATVLTEAGYVGEDIESILTRLLQASDYDV 169 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 170 ASAERGIVFIDEIDKIA 186 >gi|295692957|ref|YP_003601567.1| atpase, aaa family [Lactobacillus crispatus ST1] gi|295031063|emb|CBL50542.1| ATPase, AAA family [Lactobacillus crispatus ST1] Length = 98 Score = 43.9 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP+TL + GQ E K K +L GPPG GKT+LAQ++A+E Sbjct: 11 MRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAKENDYP 68 Query: 82 FRSTSGPVIAKA 93 F S + + KA Sbjct: 69 FASFNASIDNKA 80 >gi|291515534|emb|CBK64744.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Alistipes shahii WAL 8301] Length = 422 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 29/127 (22%) Query: 21 LLRPRTLEEFTGQ-------------VEACSNLKVFIEAAKARAEALD--HVLFVGPPGL 65 LL+P ++EF Q V ++ K + A K +D +++ VGP G Sbjct: 72 LLKPAQIKEFLDQYVIGQDAAKRYMSVAVYNHYKRLLYAPKEDEVEIDKSNIVLVGPTGT 131 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111 GKT +A+ +A+ L V F V+ +AG D+ ++L+ L +R ++FI Sbjct: 132 GKTLMARTIAKLLKVPFTIVDATVLTEAGYVGEDVESILSRLLQVADYNVEQAERGIVFI 191 Query: 112 DEIHRLS 118 DEI +++ Sbjct: 192 DEIDKIA 198 >gi|169848944|ref|XP_001831176.1| valosin-containing protein [Coprinopsis cinerea okayama7#130] gi|116507744|gb|EAU90639.1| valosin-containing protein [Coprinopsis cinerea okayama7#130] Length = 816 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 518 VLFYGPPGTGKTLLAKAIANECNANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 577 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 578 MFFDELDSIA 587 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 245 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|147920791|ref|YP_685403.1| putative cell division cycle protein 48 [uncultured methanogenic archaeon RC-I] gi|110620799|emb|CAJ36077.1| putative cell division cycle protein 48 [uncultured methanogenic archaeon RC-I] Length = 942 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108 VL GPPG GKT +A+ VA E +F + SGP I L + ED + Sbjct: 219 VLLFGPPGTGKTMIAKAVASETDAHFINISGPEIMSKYYGESEKQLRDIFKEAEDNAPSI 278 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 279 IFIDEIDSIAPKREEV 294 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 ++ GPPG GKT LA+ VA E NF S GP I Sbjct: 677 IMMFGPPGTGKTLLAKAVANESEANFISIKGPEI 710 >gi|268611240|ref|ZP_06144967.1| ATP-dependent protease ATP-binding subunit ClpX [Ruminococcus flavefaciens FD-1] Length = 435 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 34/140 (24%) Query: 13 SQEDADIS---LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD--------- 55 S++ DIS LL+P ++E+ GQ EA +L V + R A + Sbjct: 56 SEKTTDISKLKLLKPVEIKEYLDEYVIGQDEAKKSLAVAVYNHYKRITAQEQKDEDGIDL 115 Query: 56 ---HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 +VL +GP G+GKT LAQ +A+ L V F I +AG + + N+ Sbjct: 116 QKSNVLLLGPTGVGKTFLAQTLAKLLNVPFAIADATTITEAGYVGDDVENVLLRLIQAAD 175 Query: 104 -----EDRDVLFIDEIHRLS 118 ++ +++IDEI +++ Sbjct: 176 YDIKAAEKGIIYIDEIDKIA 195 >gi|260221544|emb|CBA30215.1| hypothetical protein Csp_C22430 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 733 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 37/252 (14%) Query: 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF---- 82 LE+F E L ++ A AR EA ++L GPPG GKT LA+V+A+ +G+ Sbjct: 275 LEDFAFVAEDAHMLCRLLQHAVARKEAGVNILLYGPPGTGKTELAKVIAQHVGLELFEVE 334 Query: 83 ------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED---FQ 133 S SG ++ +A + + L DE VE++ P + F Sbjct: 335 YADRDGNSLSGRDRYRSLQIAQVFLKGSAQAALLFDE-------VEDVFPPLTSETASFI 387 Query: 134 LDLMVGEGPSARSVK--------INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185 P+ SV + + I T R+ + + RF + L Sbjct: 388 ARADAHATPANASVSGKAWVNQILESNAVPTIWVTNRIEQIDPAFRRRFAYHLELKSPPP 447 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 + +V++ L G++V++ ++ R TP ++R A A T + Sbjct: 448 GAREGVVRK--TLEGISVSEAFVARLSGRKGLTP-------AQIRTAARFARLSTPENGV 498 Query: 246 ADAALLRLAIDK 257 +D+AL+ ID+ Sbjct: 499 SDSALMETLIDR 510 >gi|212536558|ref|XP_002148435.1| mitochondrial chaperone bcs1, putative [Penicillium marneffei ATCC 18224] gi|210070834|gb|EEA24924.1| mitochondrial chaperone bcs1, putative [Penicillium marneffei ATCC 18224] Length = 486 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 LF GPPG GK++L+ +A E G++ P +A DL + ++ R V+ +++I Sbjct: 266 LFYGPPGTGKSSLSLAIAGEFGLDLYEVKIPSVATDADLEQMFQDIPPRCVVLLEDI 322 >gi|168187300|ref|ZP_02621935.1| ATP-dependent protease, Lon family [Clostridium botulinum C str. Eklund] gi|169294755|gb|EDS76888.1| ATP-dependent protease, Lon family [Clostridium botulinum C str. Eklund] Length = 635 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 84/227 (37%), Gaps = 54/227 (23%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +S+LRP++ E GQ +L +K + H++ GPPG+GKTT A++ E+ Sbjct: 166 LSMLRPKSFSEIVGQERPIKSL-----ISKLASPYPQHIILYGPPGVGKTTAARLALEEV 220 Query: 79 ------------------GVNFR------------STSGPVIAKAG-DLAAL-------- 99 G R S P+ + DLA + Sbjct: 221 KKLKHTPFGESAKFVEVDGTTLRWDPREIANPLLGSVHDPIYQGSKRDLAEVGVPEPKPG 280 Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINL------- 151 L VLFIDEI L I++ L +ED +++ P ++ + Sbjct: 281 LVTEAHGGVLFIDEIGELDTILQNKLLKVLEDKRVEFSSSYYDPDDENIPKYIKYLFEHG 340 Query: 152 --SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196 + F LI ATTR NP + D+K IV+ A Sbjct: 341 APADFVLIGATTREPRDINPALRSRCTEVYFEPLSANDIKNIVENAA 387 >gi|126459231|ref|YP_001055509.1| TBP-interacting protein TIP49 [Pyrobaculum calidifontis JCM 11548] gi|126248952|gb|ABO08043.1| TBP-interacting protein TIP49 [Pyrobaculum calidifontis JCM 11548] Length = 450 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 5/65 (7%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89 F GQVEA + ++ + A VL VGPPG GKT LA +ARELG R T P Sbjct: 38 FVGQVEAREAAYIVVKMIREGKFAGKGVLIVGPPGTGKTALALGIARELG---RET--PF 92 Query: 90 IAKAG 94 +A +G Sbjct: 93 VALSG 97 >gi|51893691|ref|YP_076382.1| methanol dehydrogenase regulatory protein [Symbiobacterium thermophilum IAM 14863] gi|51857380|dbj|BAD41538.1| methanol dehydrogenase regulatory protein [Symbiobacterium thermophilum IAM 14863] Length = 319 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 38/166 (22%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLEDRD------- 107 HVL PG+GKTTL + +AR LG FR P + + + N + + Sbjct: 37 HVLIEDVPGVGKTTLVRSLARSLGCEFRRIQFTPDLLPSDVTGVSIYNQKTGEFEFRPGP 96 Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 ++ DEI+R S + L ME+ QL + V L R L+ AT Sbjct: 97 IMAQIILADEINRTSPKTQSALLECMEEGQL--------TVDGVTRRLPRPFLVLAT--- 145 Query: 164 GLLTNPLQ------------DRFGIPIRLNFYEIEDLKTIVQRGAK 197 NP++ DRF + +RL + + D T+V+R + Sbjct: 146 ---QNPIEYEGTFPLPEAQLDRFLLKLRLGYPSLRDEMTVVERSRR 188 >gi|330507349|ref|YP_004383777.1| AAA family ATPase [Methanosaeta concilii GP-6] gi|328928157|gb|AEB67959.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6] Length = 737 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E G NF S +GP I G+ L + + + Sbjct: 229 VLLYGPPGTGKTLIAKAVANESGANFISIAGPEIMSKYYGESEQRLREIFEEAQKSAPSI 288 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 289 IFIDEIDSIA 298 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT +AQ VA E NF S GP Sbjct: 501 ILLYGPPGTGKTMIAQAVANETNANFISIRGP 532 >gi|242004160|ref|XP_002422998.1| protein MSP1, putative [Pediculus humanus corporis] gi|212505914|gb|EEB10260.1| protein MSP1, putative [Pediculus humanus corporis] Length = 176 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%) Query: 57 VLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIA--KAGDLAALLTNLEDRDVLFIDE 113 +LF GPPG GKT LAQ +A E+ + +R +S V++ + +L L + +LF DE Sbjct: 47 ILFYGPPGTGKTMLAQAIANEMRALLYRVSSADVLSHWQGENLFRELKTMSKTTILFFDE 106 Query: 114 I 114 I Sbjct: 107 I 107 >gi|295696093|ref|YP_003589331.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912] gi|295411695|gb|ADG06187.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912] Length = 536 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 24/221 (10%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR-- 106 AE V+ GPPG GKT LA+ VA E GV F + SG V G A + +L D+ Sbjct: 137 AEMPKGVILYGPPGTGKTLLARAVAGEAGVEFVACSGSQFVEQYVGLGAKKIRDLFDQVR 196 Query: 107 -----DVLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAA 159 ++F DE+ L E D L+ L+ +G R I ++ A Sbjct: 197 RIGRPAIIFFDELDALGRRRGETGSSQEWDQTLNELLVQLDGFHGRQDII------VMGA 250 Query: 160 TTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 T R+ +L L RF IR++ IE + I++ A+ + A + +R Sbjct: 251 TNRLDILDPALLRPGRFDRHIRVDLPSIEGREKILRLHARNKPI----HPAVDFRSLARR 306 Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258 TP +G +L+ + + A + K R+I +A AID++ Sbjct: 307 TPGFSGAMLKHLCNEAAIIAVKEEARQI-EARHFSQAIDRV 346 >gi|296135939|ref|YP_003643181.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12] gi|295796061|gb|ADG30851.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12] Length = 629 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 8/91 (8%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92 E LK E ++ A A VL VGPPG+GKT LA+ VA E GV F S SG + Sbjct: 192 EVVDFLKNPGEHSRLGARAPKGVLLVGPPGVGKTLLARAVAGEAGVPFFSISGSEFVEMF 251 Query: 93 AGDLAALLTNLEDR------DVLFIDEIHRL 117 G AA + +L ++ ++FIDE+ L Sbjct: 252 VGVGAARVRDLFEQAREKSPAIIFIDELDAL 282 >gi|221052024|ref|XP_002257588.1| cell division cycle ATPase [Plasmodium knowlesi strain H] gi|193807418|emb|CAQ37924.1| cell division cycle ATPase, putative [Plasmodium knowlesi strain H] Length = 1132 Score = 43.9 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E NF S GP + G+ A + +L D+ + Sbjct: 880 ILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAASPCI 939 Query: 109 LFIDEIHRLS 118 +F DEI L+ Sbjct: 940 IFFDEIDSLA 949 >gi|118371283|ref|XP_001018841.1| ATPase, AAA family protein [Tetrahymena thermophila] gi|89300608|gb|EAR98596.1| ATPase, AAA family protein [Tetrahymena thermophila SB210] Length = 828 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +VF E + R +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 554 QVFDEFVRPRT----GLLFFGPPGTGKTLLAKCIATETKMNFLSVKGP 597 >gi|28209972|ref|NP_780916.1| cell division protein ftsH [Clostridium tetani E88] gi|28202407|gb|AAO34853.1| cell division protein ftsH [Clostridium tetani E88] Length = 603 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED------RDV 108 VL VGPPG GKT LA+ +A E GV F S SG + G A+ + +L D R + Sbjct: 197 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNSRCI 256 Query: 109 LFIDEI 114 +FIDEI Sbjct: 257 IFIDEI 262 >gi|322490717|emb|CBZ25980.1| Transitional endoplasmic reticulum ATPase,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 785 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 504 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 563 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 564 LFFDELDSVA 573 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 231 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 290 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 291 IFIDEIDSIA 300 >gi|309804815|ref|ZP_07698879.1| ATPase, AAA family [Lactobacillus iners LactinV 09V1-c] gi|309809896|ref|ZP_07703744.1| ATPase, AAA family [Lactobacillus iners SPIN 2503V10-D] gi|312871594|ref|ZP_07731686.1| ATPase, AAA family [Lactobacillus iners LEAF 3008A-a] gi|312873237|ref|ZP_07733293.1| ATPase, AAA family [Lactobacillus iners LEAF 2052A-d] gi|312874638|ref|ZP_07734662.1| ATPase, AAA family [Lactobacillus iners LEAF 2053A-b] gi|325913012|ref|ZP_08175385.1| ATPase, AAA family [Lactobacillus iners UPII 60-B] gi|329921095|ref|ZP_08277618.1| ATPase, AAA family [Lactobacillus iners SPIN 1401G] gi|308165925|gb|EFO68144.1| ATPase, AAA family [Lactobacillus iners LactinV 09V1-c] gi|308169684|gb|EFO71729.1| ATPase, AAA family [Lactobacillus iners SPIN 2503V10-D] gi|311089868|gb|EFQ48288.1| ATPase, AAA family [Lactobacillus iners LEAF 2053A-b] gi|311091248|gb|EFQ49636.1| ATPase, AAA family [Lactobacillus iners LEAF 2052A-d] gi|311092819|gb|EFQ51171.1| ATPase, AAA family [Lactobacillus iners LEAF 3008A-a] gi|325477692|gb|EGC80831.1| ATPase, AAA family [Lactobacillus iners UPII 60-B] gi|328935002|gb|EGG31491.1| ATPase, AAA family [Lactobacillus iners SPIN 1401G] Length = 445 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L + GQ K+ +A+ L ++ G PG+GKT++A +A Sbjct: 18 MRPHSLTDVVGQQHLIGPGKIITRMVEAKL--LSSMILYGQPGIGKTSIATAIAGATKYA 75 Query: 82 FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR + ++A+ G ++ + +L +DEI RL ++ L P +E Q Sbjct: 76 FRKLNAATDSKKDLQIVAEEGKMSGTV-------ILLLDEIQRLDKSKQDFLLPLLESGQ 128 Query: 134 LDLM 137 + L+ Sbjct: 129 IILI 132 >gi|259501667|ref|ZP_05744569.1| AAA family ATPase [Lactobacillus iners DSM 13335] gi|259166952|gb|EEW51447.1| AAA family ATPase [Lactobacillus iners DSM 13335] Length = 439 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L + GQ K+ +A+ L ++ G PG+GKT++A +A Sbjct: 12 MRPHSLTDVVGQQHLIGPGKIITRMVEAKL--LSSMILYGQPGIGKTSIATAIAGATKYA 69 Query: 82 FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR + ++A+ G ++ + +L +DEI RL ++ L P +E Q Sbjct: 70 FRKLNAATDSKKDLQIVAEEGKMSGTV-------ILLLDEIQRLDKSKQDFLLPLLESGQ 122 Query: 134 LDLM 137 + L+ Sbjct: 123 IILI 126 >gi|294939027|ref|XP_002782298.1| cell division cycle protein 48, putative [Perkinsus marinus ATCC 50983] gi|239893837|gb|EER14093.1| cell division cycle protein 48, putative [Perkinsus marinus ATCC 50983] Length = 747 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT +A+ VA E NF S GP Sbjct: 460 VLFYGPPGCGKTMMAKAVASECSANFISIKGP 491 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ +A E G F +GP V++K AG+ + L E+ + + Sbjct: 187 VLLYGPPGCGKTLIARAIANETGAFFFLINGPEVMSKMAGEAESNLRKAFEEAEKNAPAI 246 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 247 IFIDEIDSIA 256 >gi|154345666|ref|XP_001568770.1| Transitional endoplasmic reticulum ATPase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066112|emb|CAM43901.1| putative transitional endoplasmic reticulum ATPase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 785 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 504 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 563 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 564 LFFDELDSVA 573 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 231 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAERNAPAI 290 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 291 IFIDEIDSIA 300 >gi|169854167|ref|XP_001833760.1| replication factor C [Coprinopsis cinerea okayama7#130] gi|116505157|gb|EAU88052.1| replication factor C [Coprinopsis cinerea okayama7#130] Length = 380 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 7/68 (10%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+T+ E + Q S L + +A L H+LF GPPG GKT+ +AREL Sbjct: 32 VEKYRPKTINEISAQEHTTSVLSRTLTSAN-----LPHMLFYGPPGTGKTSTILALAREL 86 Query: 79 --GVNFRS 84 NFR+ Sbjct: 87 FGPDNFRN 94 >gi|308799295|ref|XP_003074428.1| putative transitional endoplasmic reticulum ATPase (ISS) [Ostreococcus tauri] gi|116000599|emb|CAL50279.1| putative transitional endoplasmic reticulum ATPase (ISS) [Ostreococcus tauri] Length = 1228 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 554 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCV 613 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 614 LFFDELDSIA 623 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 281 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 340 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 341 IFIDEIDSIA 350 >gi|322815457|gb|EFZ24109.1| replication factor C, subunit 1, putative [Trypanosoma cruzi] Length = 582 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +P+T+ + A + LK +IE + + + L GPPG+GKTT VVARELG Sbjct: 18 YKPKTIAQMCYPSSA-NKLKAWIETFDSGSSRMRAALLSGPPGVGKTTSVYVVARELG 74 >gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1] gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1] Length = 326 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR+L++ Q + LK F+ + + + H+LF GPPG GKTT A + +L Sbjct: 12 RPRSLDDIVNQKDIVERLKRFV-----KEKNMPHLLFAGPPGTGKTTAALALVHDL 62 >gi|322503495|emb|CBZ38580.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 784 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 504 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 563 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 564 LFFDELDSVA 573 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 231 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 290 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 291 IFIDEIDSIA 300 >gi|320531031|ref|ZP_08032061.1| ATP-dependent protease, Lon family [Selenomonas artemidis F0399] gi|320136697|gb|EFW28649.1| ATP-dependent protease, Lon family [Selenomonas artemidis F0399] Length = 781 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV---A 75 + LLRP+ +E GQ A +L AK + H+L GPPG+GKTT A++V A Sbjct: 171 MELLRPQNFDEIIGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTTAARLVLEAA 225 Query: 76 RELGVNFRSTSGPVIAKAG 94 ++ V+ S P + G Sbjct: 226 KKRAVSPFGESAPFVETDG 244 >gi|281204296|gb|EFA78492.1| AAA ATPase domain-containing protein [Polysphondylium pallidum PN500] Length = 1293 Score = 43.9 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1029 ILFYGPPGTGKTLLAKAIATECSLNFLSVKGP 1060 >gi|289579225|ref|YP_003477852.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus Ab9] gi|297545405|ref|YP_003677707.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528938|gb|ADD03290.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus Ab9] gi|296843180|gb|ADH61696.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 611 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 50/104 (48%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T + G E L+ +E K + LD VL VGPPG GKT LA+ VA E Sbjct: 159 TFNDVAGADEEKEELQEIVEFLKYPKKFLDLGARIPKGVLLVGPPGTGKTLLAKAVAGEA 218 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G AA + +L ++ ++FIDEI Sbjct: 219 GVPFFSISGSDFVEMFVGVGAARVRDLFEQAKKNAPCIVFIDEI 262 >gi|325968176|ref|YP_004244368.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28] gi|323707379|gb|ADY00866.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28] Length = 435 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RPR L E Q EA L +I + + + V+ VG PG GKTTLA +A E Sbjct: 8 IEKYRPRKLSEVVNQEEAKKALLDWINSWEKGKPSRKAVMLVGSPGTGKTTLAYALANEK 67 Query: 79 G 79 G Sbjct: 68 G 68 >gi|320164282|gb|EFW41181.1| valosin-containing protein [Capsaspora owczarzaki ATCC 30864] Length = 813 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGP 545 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 300 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 301 IFIDELDSIA 310 >gi|307354036|ref|YP_003895087.1| AAA family ATPase [Methanoplanus petrolearius DSM 11571] gi|307157269|gb|ADN36649.1| AAA family ATPase, CDC48 subfamily [Methanoplanus petrolearius DSM 11571] Length = 846 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGD----LAALLTNLEDR--DV 108 VL GPPG GKT +A+ VA E G +F S +GP VI+K G+ L + ED + Sbjct: 219 VLLYGPPGTGKTLIAKAVANESGAHFISIAGPEVISKYYGESEQRLREIFDEAEDNAPSI 278 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 279 IFIDELDSIA 288 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E G NF GP Sbjct: 529 VLLYGPPGTGKTLIAKAVANESGANFIPVRGP 560 >gi|322435043|ref|YP_004217255.1| ATP-dependent protease La [Acidobacterium sp. MP5ACTX9] gi|321162770|gb|ADW68475.1| ATP-dependent protease La [Acidobacterium sp. MP5ACTX9] Length = 807 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 47/202 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L Q +A+ G F R + G V +A G + + Sbjct: 355 LCFVGPPGVGKTSLGQSIAKATGRKFVRMSLGGVRDEAEIRGHRRTYIGALPGQVIQSMK 414 Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ +F +DEI ++ + + E+L P +D LD V+ Sbjct: 415 KAGTKNPVFMLDEIDKMASDFRGDPASALLEVLDPEQNNKFQDHYLD-----------VE 463 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAV 203 +LS+ +A + + PLQDR I IRL+ Y EIE L + +V++ + GL Sbjct: 464 YDLSQVLFVATANVLDTIPGPLQDRMEI-IRLSGYTEIEKLEIAKQYLVKKQREGNGLTE 522 Query: 204 TDEAACEIAMRS--RGTPRIAG 223 + A++S RG R AG Sbjct: 523 EQIQFEDGALKSLIRGYTREAG 544 >gi|299469966|emb|CBN79143.1| conserved unknown protein [Ectocarpus siliculosus] Length = 831 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT +A+ VA E NF S GP Sbjct: 534 VLFYGPPGCGKTLMAKAVANECQANFISVKGP 565 >gi|167379134|ref|XP_001735005.1| transitional endoplasmic reticulum ATPase [Entamoeba dispar SAW760] gi|165903136|gb|EDR28786.1| transitional endoplasmic reticulum ATPase, putative [Entamoeba dispar SAW760] Length = 781 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA + NF S GP + G+ A + ++ D+ V Sbjct: 522 VLFFGPPGCGKTLLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQAAPCV 581 Query: 109 LFIDEI 114 LF DE+ Sbjct: 582 LFFDEL 587 Score = 38.9 bits (89), Expect = 1.00, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108 VL GPPG GKT +A+ VA E GV +GP I G+L E + Sbjct: 249 VLLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKNAPAL 308 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 309 IFIDEIDSIA 318 >gi|71662470|ref|XP_818241.1| replication factor C, subunit 1 [Trypanosoma cruzi strain CL Brener] gi|70883481|gb|EAN96390.1| replication factor C, subunit 1, putative [Trypanosoma cruzi] Length = 582 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +P+T+ + A + LK +IE + + + L GPPG+GKTT VVARELG Sbjct: 18 YKPKTIAQMCYPSSA-NKLKAWIETFDSGSSRMRAALLSGPPGVGKTTSVYVVARELG 74 >gi|313212248|emb|CBY36254.1| unnamed protein product [Oikopleura dioica] gi|313232801|emb|CBY09484.1| unnamed protein product [Oikopleura dioica] Length = 801 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISIKGP 543 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 239 ILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSI 298 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 299 IFIDEIDSIA 308 >gi|302191125|ref|ZP_07267379.1| recombination factor protein RarA [Lactobacillus iners AB-1] gi|309803241|ref|ZP_07697338.1| recombination factor protein RarA [Lactobacillus iners LactinV 11V1-d] gi|309806317|ref|ZP_07700330.1| recombination factor protein RarA [Lactobacillus iners LactinV 03V1-b] gi|309808533|ref|ZP_07702431.1| recombination factor protein RarA [Lactobacillus iners LactinV 01V1-a] gi|312871951|ref|ZP_07732033.1| recombination factor protein RarA [Lactobacillus iners LEAF 2062A-h1] gi|315653730|ref|ZP_07906650.1| AAA family ATPase [Lactobacillus iners ATCC 55195] gi|325911724|ref|ZP_08174131.1| recombination factor protein RarA [Lactobacillus iners UPII 143-D] gi|308164749|gb|EFO66999.1| recombination factor protein RarA [Lactobacillus iners LactinV 11V1-d] gi|308167301|gb|EFO69467.1| recombination factor protein RarA [Lactobacillus iners LactinV 03V1-b] gi|308168210|gb|EFO70330.1| recombination factor protein RarA [Lactobacillus iners LactinV 01V1-a] gi|311092528|gb|EFQ50890.1| recombination factor protein RarA [Lactobacillus iners LEAF 2062A-h1] gi|315489092|gb|EFU78734.1| AAA family ATPase [Lactobacillus iners ATCC 55195] gi|325476490|gb|EGC79649.1| recombination factor protein RarA [Lactobacillus iners UPII 143-D] Length = 435 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 17/124 (13%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP +L + GQ K+ +A+ L ++ G PG+GKT++A +A Sbjct: 8 MRPHSLTDVVGQQHLIGPGKIITRMVEAKL--LSSMILYGQPGIGKTSIATAIAGATKYA 65 Query: 82 FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 FR + ++A+ G ++ + +L +DEI RL ++ L P +E Q Sbjct: 66 FRKLNAATDSKKDLQIVAEEGKMSGTV-------ILLLDEIQRLDKSKQDFLLPLLESGQ 118 Query: 134 LDLM 137 + L+ Sbjct: 119 IILI 122 >gi|238021855|ref|ZP_04602281.1| hypothetical protein GCWU000324_01759 [Kingella oralis ATCC 51147] gi|237866469|gb|EEP67511.1| hypothetical protein GCWU000324_01759 [Kingella oralis ATCC 51147] Length = 426 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +VL +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 117 NVLLIGPTGSGKTLLAQSLARKLNVPFAMADATTLTEAGYVGEDVEQIITKLLGNCDFDV 176 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 DKAQRGIVYIDEIDKIS 193 >gi|227538769|ref|ZP_03968818.1| possible ATPase involved in DNA repair [Sphingobacterium spiritivorum ATCC 33300] gi|227241278|gb|EEI91293.1| possible ATPase involved in DNA repair [Sphingobacterium spiritivorum ATCC 33300] Length = 815 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 33/177 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------------GDLAALLT 101 +L + PPG GKTTL + +A+ LG++F +GP I + +L + Sbjct: 459 LLLISPPGYGKTTLMEYLAKILGLHFVKVNGPTIGHSITSIDPVEAKTSGEREELKKINL 518 Query: 102 NLE--DRDVLFIDEIHRLSI-IVEEILYPAMEDFQLD-LMVGEGPSARSVKINLSRFTLI 157 + E D +L++D+I LS +++ + A ++D + GE +++ + RF ++ Sbjct: 519 SFEMADNVMLYLDDIQHLSAEFLQKFISLADGQRKIDGIFDGE---SKTYDLRGKRFCIV 575 Query: 158 AATTRVGLLTNPLQD---RFGIPIRL-NFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210 A NP + +F IP L N ++ +L ++ A L L++ + AA E Sbjct: 576 MA-------GNPYTESGSKFQIPDMLANRADVYNLGDVIGDTAHLFNLSLIENAAIE 625 >gi|220907438|ref|YP_002482749.1| ATPase AAA [Cyanothece sp. PCC 7425] gi|219864049|gb|ACL44388.1| Vesicle-fusing ATPase [Cyanothece sp. PCC 7425] Length = 601 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD-- 107 E VL VGPPG GKT A+ +A+ELGVN + GP I G+ A L + + Sbjct: 109 EPTKGVLLVGPPGTGKTLTARALAKELGVNSIAIVGPEIMGKYYGEAEARLRGIFQKAAR 168 Query: 108 ----VLFIDEIHRLS 118 ++FIDEI L+ Sbjct: 169 SAPCIVFIDEIDSLA 183 >gi|124485450|ref|YP_001030066.1| methyltransferase type 11 [Methanocorpusculum labreanum Z] gi|124362991|gb|ABN06799.1| AAA family ATPase, CDC48 subfamily [Methanocorpusculum labreanum Z] Length = 826 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 14/87 (16%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVG 61 R ++ E AD+S + G +A +++ +E R E VL G Sbjct: 468 REIALETADVSWT------DIGGSRDAVRDVRESVEFPLTRKEVFAQLGIRPPKGVLLYG 521 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGP 88 PPG GKT +A+ VA E G NF + GP Sbjct: 522 PPGTGKTMIAKAVAHESGANFIAVKGP 548 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E G +F S +GP I Sbjct: 216 VLLYGPPGTGKTLIAKAVANESGAHFISIAGPEI 249 >gi|308162288|gb|EFO64695.1| AAA family ATPase [Giardia lamblia P15] Length = 870 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VL 109 L GPPG GK+ LA+ +A E G N+ S GP +++K G+ + N+ D+ VL Sbjct: 544 LLWGPPGTGKSLLAKAIANECGCNYISIKGPELLSKWVGESEQNIRNIFDKARQAAPCVL 603 Query: 110 FIDEIHRLS 118 F DEI ++ Sbjct: 604 FFDEIESIT 612 >gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895] gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895] Length = 349 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR L++ Q A + LK +E+A L H+LF GPPG GKT+ + +EL Sbjct: 29 RPRKLDDVASQAHAITVLKRTLESAN-----LPHMLFYGPPGTGKTSTILALTKEL 79 >gi|146103031|ref|XP_001469468.1| Transitional endoplasmic reticulum ATPase; valosin-containing protein homolog [Leishmania infantum] gi|134073838|emb|CAM72577.1| putative Transitional endoplasmic reticulum ATPase [Leishmania infantum JPCM5] Length = 690 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 410 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 469 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 470 LFFDELDSVA 479 >gi|8439575|gb|AAF74998.1| cdc48-like protein [Entamoeba histolytica] Length = 772 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA + NF S GP + G+ A + ++ D+ V Sbjct: 513 VLFFGPPGCGKTLLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQAAPCV 572 Query: 109 LFIDEI 114 LF DE+ Sbjct: 573 LFFDEL 578 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108 VL GPPG GKT +A+ VA E GV +GP I G+L E + Sbjct: 240 VLLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKNAPAL 299 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 300 IFIDEIDSIA 309 >gi|260911509|ref|ZP_05918097.1| cell division protein FtsH [Prevotella sp. oral taxon 472 str. F0295] gi|260634373|gb|EEX52475.1| cell division protein FtsH [Prevotella sp. oral taxon 472 str. F0295] Length = 669 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 108/261 (41%), Gaps = 45/261 (17%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ A ++ ++ K+ + D L VGPPG GKT LA+ VA E Sbjct: 193 TFKDVAGQEGAKQEVQEIVDFLKSPQKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 252 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130 GV F S SG V A + L +++ ++FIDEI + + P+M Sbjct: 253 GVPFFSMSGSDFVEMFVGVGASRVRDLFHQAKEKSPCIIFIDEIDAVGRARSK--NPSM- 309 Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177 G R +N S ++AAT R +L + L RF Sbjct: 310 ---------GGNDERENTLNALLTEMDGFGTNSGVIILAATNRADMLDSALLRAGRFDRQ 360 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 I ++ ++ + K I Q + V ++ +I SR TP +G + V + A + Sbjct: 361 ISVDLPDLPERKEIFQVHLR----PVKVDSTVDIDFLSRQTPGFSGADIANVCNEAALIA 416 Query: 238 AKTITREIADAALLRLAIDKM 258 A+ +R + L A+D++ Sbjct: 417 ARHNSRTVGKQDFLD-AVDRL 436 >gi|228470720|ref|ZP_04055571.1| DNA polymerase III, subunits gamma and tau [Porphyromonas uenonis 60-3] gi|228307577|gb|EEK16573.1| DNA polymerase III, subunits gamma and tau [Porphyromonas uenonis 60-3] Length = 429 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 13/104 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+T +E GQ C LK I+ K + H LF GP G+GKT+ A+++AR + Sbjct: 13 RPQTFDEMLGQEAICLTLKSAIQQGK-----IAHAYLFCGPRGVGKTSAARILARTINCE 67 Query: 82 FRSTSGPVIAKAGDLAALLT----NLEDRDVL---FIDEIHRLS 118 + G + A L N+ + D +D+I RL+ Sbjct: 68 QLTPQGEACGVCANCQAALHQRAFNIYELDAASNNSVDDIRRLN 111 >gi|47969542|emb|CAG25608.1| ftsH-like protease [Pisum sativum] Length = 706 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L T + R + Sbjct: 262 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFTAAKKRSPCI 321 Query: 109 LFIDEI 114 +FIDEI Sbjct: 322 IFIDEI 327 >gi|159108838|ref|XP_001704687.1| AAA family ATPase [Giardia lamblia ATCC 50803] gi|157432757|gb|EDO77013.1| AAA family ATPase [Giardia lamblia ATCC 50803] Length = 870 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VL 109 L GPPG GK+ LA+ +A E G N+ S GP +++K G+ + N+ D+ VL Sbjct: 544 LLWGPPGTGKSLLAKAIANECGCNYISIKGPELLSKWVGESEQNIRNIFDKARQAAPCVL 603 Query: 110 FIDEIHRLS 118 F DEI ++ Sbjct: 604 FFDEIESIT 612 >gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis] Length = 341 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP +L+ Q + + +K FIE + L H+LF GPPG GKTT VA+ L Sbjct: 28 RPTSLDNIVSQDDIVATIKRFIEGNR-----LPHLLFYGPPGTGKTTTIMAVAKML 78 >gi|196048014|ref|ZP_03115192.1| stage V sporulation protein K [Bacillus cereus 03BB108] gi|196021270|gb|EDX59999.1| stage V sporulation protein K [Bacillus cereus 03BB108] Length = 550 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 23/104 (22%) Query: 56 HVLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGPVIAKAGDLAALL---TNLEDRD-- 107 H++F G PG+GKTT A++VA +ELGV T V DL A T L+ +D Sbjct: 331 HMVFKGSPGVGKTTFARIVAQLLKELGV--LKTGHLVEVDRSDLVAGYVGQTALKTKDVI 388 Query: 108 ------VLFIDEIHRLSIIVEEI-------LYPAMEDFQLDLMV 138 VLFIDE + L+ ++ L AMED++ +L+V Sbjct: 389 ESALGGVLFIDEAYSLAQNNDQFGKEAIDTLVKAMEDYRDELVV 432 >gi|296270368|ref|YP_003653000.1| AAA ATPase central domain-containing protein [Thermobispora bispora DSM 43833] gi|296093155|gb|ADG89107.1| AAA ATPase central domain protein [Thermobispora bispora DSM 43833] Length = 779 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 60/122 (49%), Gaps = 31/122 (25%) Query: 26 TLEEFTGQVEACSNLK----------VFIEAAKARAEA-------LDHVLFVGPPGLGKT 68 ++EE G++EA L+ IEAA+ R EA L H +FVGPPG GKT Sbjct: 215 SVEEALGELEAMIGLEPVKEQVRAIAASIEAARLRREAGYTAEQPLRHFVFVGPPGTGKT 274 Query: 69 TLAQVVARELGVNFRSTSGPVIAKA--GDL-------AALLTN-LEDR---DVLFIDEIH 115 T+A+ +A + F P + +A DL A+ TN L DR VLFIDE + Sbjct: 275 TVARTLA-TICYAFGLLETPYVVEAQRADLVGEYLGATAIKTNELIDRALGGVLFIDEAY 333 Query: 116 RL 117 L Sbjct: 334 SL 335 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 12/76 (15%) Query: 54 LDHVLFVGPPGLGKTTLAQVVAR---ELGVNFR-----STSGPVIAKAGDLAALLTN-LE 104 + H +FVGPPG GKTT+A+++ R LG+ R +T ++ + A+ TN L Sbjct: 548 MRHFVFVGPPGTGKTTVARILGRIFAALGMLARPDVVEATRADLVGQHLGATAIKTNELI 607 Query: 105 DR---DVLFIDEIHRL 117 DR VLFIDE + L Sbjct: 608 DRALGGVLFIDEAYSL 623 >gi|212704618|ref|ZP_03312746.1| hypothetical protein DESPIG_02681 [Desulfovibrio piger ATCC 29098] gi|212672017|gb|EEB32500.1| hypothetical protein DESPIG_02681 [Desulfovibrio piger ATCC 29098] Length = 813 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 108/261 (41%), Gaps = 62/261 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+LA+ VAR G + R + G V +A G + L Sbjct: 356 LCFVGPPGVGKTSLAKSVARATGREYVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 415 Query: 102 NLEDRDVLF-IDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 ++ + LF +DEI +++ + E+L P + +D + ++ +LS Sbjct: 416 RVKSSNPLFCLDEIDKMTSDFRGDPASALLEVLDPEQNNTFMDHYL-------DLEYDLS 468 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKLTGLA 202 + I + + PL DR I I LN Y E E + + + G K +A Sbjct: 469 KVFFITTANSLDSIPAPLLDRMEI-IELNSYLETEKRQIARNFLLPRQVKEHGLKPENIA 527 Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262 ++D A EI +R + A + + REI AAL R ++ D Sbjct: 528 LSDGAILEI-----------------IRSYTREAGVRNLEREI--AALCRKTAIRLVEDN 568 Query: 263 LDLRYLTMIARNFGGGPVGIE 283 DL I+R +G++ Sbjct: 569 -DLDKCVSISRQNLASFLGVK 588 >gi|253742222|gb|EES99067.1| AAA family ATPase [Giardia intestinalis ATCC 50581] Length = 870 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VL 109 L GPPG GK+ LA+ +A E G N+ S GP +++K G+ + N+ D+ VL Sbjct: 544 LLWGPPGTGKSLLAKAIANECGCNYISIKGPELLSKWVGESEQNIRNIFDKARQAAPCVL 603 Query: 110 FIDEIHRLS 118 F DEI ++ Sbjct: 604 FFDEIESIT 612 >gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966] gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966] Length = 349 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT-TLAQVVARELGVN 81 RP +L++ + L+ FI A + L H+LF GPPG GKT T+ + AR G + Sbjct: 30 RPSSLDQIMSHQHITATLEKFITANQ-----LPHLLFYGPPGTGKTSTIMALAARLYGAS 84 Query: 82 FRST 85 FR+ Sbjct: 85 FRNN 88 >gi|67469879|ref|XP_650911.1| cdc48-like protein [Entamoeba histolytica HM-1:IMSS] gi|56467577|gb|EAL45523.1| cdc48-like protein, putative [Entamoeba histolytica HM-1:IMSS] Length = 772 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA + NF S GP + G+ A + ++ D+ V Sbjct: 513 VLFFGPPGCGKTLLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQAAPCV 572 Query: 109 LFIDEI 114 LF DE+ Sbjct: 573 LFFDEL 578 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108 VL GPPG GKT +A+ VA E GV +GP I G+L E + Sbjct: 240 VLLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKNAPAL 299 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 300 IFIDEIDSIA 309 >gi|312215325|emb|CBX95277.1| similar to peroxisomal biogenesis factor 6 [Leptosphaeria maculans] Length = 1418 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%) Query: 38 SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 S ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1050 SRPELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1096 >gi|312093422|ref|XP_003147677.1| VCP protein [Loa loa] gi|307757158|gb|EFO16392.1| VCP protein [Loa loa] Length = 622 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 317 VLFYGPPGCGKTLLAKAIAHECQANFISIKGP 348 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108 +L GPPG GKT +A+ VA E G F +GP I +L E + Sbjct: 44 ILLYGPPGTGKTLIARAVANETGAFFFLLNGPEIMSKLAGESESNLRKAFEECEKNSPAI 103 Query: 109 LFIDEI 114 LFIDE+ Sbjct: 104 LFIDEL 109 >gi|67623819|ref|XP_668192.1| AAA ATPase [Cryptosporidium hominis TU502] gi|54659385|gb|EAL37964.1| AAA ATPase [Cryptosporidium hominis] Length = 690 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 23/37 (62%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 E VL GPPG GKT LA+ +A+E G NF S GP Sbjct: 435 ETPSGVLLYGPPGCGKTLLAKAIAKESGANFISIRGP 471 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDVLFIDEI 114 VL GPPG GK+ L+ +A ELG+ F SGP I +G A L L D + E+ Sbjct: 122 VLLQGPPGTGKSYLSMCIAGELGLPFFKLSGPNIINGVSGTSEASLRKLFDDAI----EM 177 Query: 115 HRLSIIVEEI 124 II++EI Sbjct: 178 APCLIIIDEI 187 >gi|299535693|ref|ZP_07049014.1| hypothetical protein BFZC1_06708 [Lysinibacillus fusiformis ZC1] gi|298728893|gb|EFI69447.1| hypothetical protein BFZC1_06708 [Lysinibacillus fusiformis ZC1] Length = 428 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 46/225 (20%) Query: 22 LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +RP TL+E G + N ++ + E + +L G PG+GKT++A +A + Sbjct: 10 MRPLTLDEIVGHQDFIGPNTALY---KMIQNEHVPSMLLYGEPGIGKTSIANAIAGSSKL 66 Query: 81 NFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 F + + K D+ ++ + + +LF+DEIHR + + ++ L P +E+ Sbjct: 67 PFFALNATRAGKK-DVEDIVQEARISGKVILFLDEIHRFNKLQQDTLLPHVEN------- 118 Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLKTI 191 LI ATT NP D R G +L E+L + Sbjct: 119 -------------GSIVLIGATTE-----NPYHDVNPAIRSRCGEIYQLKRLTKENLIEL 160 Query: 192 VQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 V+ RG A+T +IA + G R A LL + Sbjct: 161 VEKALADERRGLGKYHFALTPSQIEQIAAAANGDARKALTLLESI 205 >gi|125974738|ref|YP_001038648.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum ATCC 27405] gi|256005251|ref|ZP_05430218.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM 2360] gi|281418793|ref|ZP_06249812.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum JW20] gi|125714963|gb|ABN53455.1| membrane protease FtsH catalytic subunit [Clostridium thermocellum ATCC 27405] gi|255990802|gb|EEU00917.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM 2360] gi|281407877|gb|EFB38136.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum JW20] gi|316941872|gb|ADU75906.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM 1313] Length = 599 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE N K F+E A VL VGPPG GKT LA+ V+ E GV F S SG Sbjct: 167 EELREIVEFLKNSKKFLELG---ARIPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFSISG 223 >gi|328880305|emb|CCA53544.1| Cell division protein FtsH [Streptomyces venezuelae ATCC 10712] Length = 453 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLF 110 V GPPG GKTT A+ +A LG F +A G+LAA L + DR ++F Sbjct: 222 VCLFGPPGTGKTTFARGIASRLGWPFVEILPSRLADEGNLAAALRSAFARIAELDRVLVF 281 Query: 111 IDEIHRLSIIVEEILYP 127 IDE+ ++ + E P Sbjct: 282 IDEVEEIAPVRSEPAQP 298 >gi|219121314|ref|XP_002185883.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582732|gb|ACI65353.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 806 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT +A+ VA E NF S GP Sbjct: 511 VLFYGPPGCGKTLMAKAVANECQANFISIKGP 542 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDSIA 307 >gi|118602250|ref|YP_903465.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567189|gb|ABL01994.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 421 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L VGP G GKT LAQ +AR L V F + +AG D+ ++ NL Sbjct: 109 NILMVGPTGSGKTLLAQTLARILDVPFTVADATTLTEAGYVGDDVENVIKNLLSKCDFDP 168 Query: 104 --EDRDVLFIDEIHRLS 118 R ++FIDEI ++S Sbjct: 169 KRAQRGIIFIDEIDKIS 185 >gi|15922918|ref|NP_378587.1| cell division control protein [Sulfolobus tokodaii str. 7] gi|15623709|dbj|BAB67696.1| 700aa long hypothetical cell division control protein [Sulfolobus tokodaii str. 7] Length = 700 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 25/39 (64%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +AE +L GPPG GKT LA+ VA E G NF + +GP Sbjct: 461 KAEIPSGILLYGPPGTGKTMLARAVAHESGANFIAINGP 499 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ +A + NF SGP I G+ L ++ ++ + Sbjct: 207 VLLYGPPGTGKTLIAKAIANTIMANFFYISGPEIGSKYYGESEKRLRDIFEQAEKNAPSI 266 Query: 109 LFIDEI 114 +F+DEI Sbjct: 267 IFVDEI 272 >gi|71663369|ref|XP_818678.1| transitional endoplasmic reticulum ATPase [Trypanosoma cruzi strain CL Brener] gi|70883943|gb|EAN96827.1| transitional endoplasmic reticulum ATPase, putative [Trypanosoma cruzi] Length = 778 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 502 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 561 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 562 LFFDELDSVA 571 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108 +L GPPG GKT +A+ VA E G F +GP I G+L E + Sbjct: 229 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRKAFEEAEKNAPSI 288 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 289 VFIDEIDSIA 298 >gi|327334168|gb|EGE75882.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL097PA1] Length = 429 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 37/135 (27%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFI--------------EAAKARAEALD----HV 57 L RPR L EF GQ EA L V + A +A + ++ ++ Sbjct: 62 LPRPRELCEFLDTWVIGQEEAKRTLSVAVYNHYKRIQSEVNVPHARRAEDDGVELGKSNI 121 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103 L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181 Query: 104 EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 182 AERGIVYIDEIDKVA 196 >gi|154499606|ref|ZP_02037644.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC 29799] gi|150271684|gb|EDM98928.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC 29799] Length = 665 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108 +L VGPPG GKT LA+ VA E GV+F S SG V G A+ + +L D+ + Sbjct: 206 ILLVGPPGTGKTLLAKAVAGEAGVHFLSISGSDFVELYVGVGASRVRDLFDQAKKNSPAI 265 Query: 109 LFIDEI 114 +FIDEI Sbjct: 266 VFIDEI 271 >gi|323509185|dbj|BAJ77485.1| cgd5_2010 [Cryptosporidium parvum] gi|323509813|dbj|BAJ77799.1| cgd5_2010 [Cryptosporidium parvum] Length = 690 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 23/37 (62%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 E VL GPPG GKT LA+ +A+E G NF S GP Sbjct: 435 ETPSGVLLYGPPGCGKTLLAKAIAKESGANFISIRGP 471 Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDVLFIDEI 114 VL GPPG GK+ L+ +A ELG+ F SGP I +G A L L D + E+ Sbjct: 122 VLLQGPPGTGKSYLSMCIAGELGLPFFKLSGPNIINGVSGTSEASLRKLFDDAI----EM 177 Query: 115 HRLSIIVEEI 124 II++EI Sbjct: 178 APCLIIIDEI 187 >gi|254520720|ref|ZP_05132776.1| ATP-dependent proteinase La [Clostridium sp. 7_2_43FAA] gi|226914469|gb|EEH99670.1| ATP-dependent proteinase La [Clostridium sp. 7_2_43FAA] Length = 630 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 88/236 (37%), Gaps = 54/236 (22%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77 +SLLRP T +E GQ A +L +K + H++ GPPG+GKT+ A++ E Sbjct: 162 MSLLRPETFDEVVGQERAIKSL-----ISKMASPYPQHIILYGPPGVGKTSAARLALEEA 216 Query: 78 ---------------------LGVNFRSTSGPVIAKA---------GDLAAL-------- 99 L + R + P++ DLA + Sbjct: 217 KKLQSTPFDGDSKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKKDLAEIGVPEPKTG 276 Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-----EGPSARSVKINLSR- 153 L VLFIDEI L I++ L +ED +++ + + +K + Sbjct: 277 LVTEAHGGVLFIDEIGELDEILQNKLLKVLEDKRVEYSSSYYDPDDENTPEYIKYLFEKG 336 Query: 154 ----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205 F LI ATTR NP + D+K I+ +K + + D Sbjct: 337 APADFVLIGATTREPGKINPALRSRCTEVYFEPLSPSDIKGIIDNASKKLNVQLED 392 >gi|189203625|ref|XP_001938148.1| peroxisomal biogenesis factor 6 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187985247|gb|EDU50735.1| peroxisomal biogenesis factor 6 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1409 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%) Query: 38 SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 S ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1042 SRPELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1088 >gi|197294665|ref|YP_001799206.1| DNA polymerase III, gamma/tau subunit [Candidatus Phytoplasma australiense] gi|171853992|emb|CAM11957.1| DNA polymerase III, gamma/tau subunit [Candidatus Phytoplasma australiense] Length = 602 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 52/239 (21%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKA--RAEALDHV-LFVGPPGLGKTTLAQVVARELG 79 RP+T ++ GQ K I+ K R + ++H LF G G GKTTLA++ A+ + Sbjct: 13 RPQTFQDVVGQ-------KFIIQTLKNAIRYQKINHCYLFSGNKGTGKTTLAKIFAKVIN 65 Query: 80 VNFRSTSGPVIAKAGD-LAALLTN-----LEDRDVLFIDEIHRLS--------------I 119 + SG V K L +L TN L+ +DEI + Sbjct: 66 CIY-PQSGDVCNKCTSCLGSLQTNNDIVELDGASYNGVDEIREIQDKAQYKPHIGKNKVY 124 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176 I++E+ F L + E P V F LI TT++ + + R F Sbjct: 125 IIDEVHVLTPNAFNALLKILEEPPKHVV------FILI--TTQMHKIPETILSRAQSFS- 175 Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGL---AVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 +E L+ I+ + K+T L +TD+A +IA S G+ R A LL ++ + Sbjct: 176 ------FENLSLENIILQLKKITNLEKIVITDDAIKDIANYSEGSMRNALSLLDQISSY 228 >gi|156062650|ref|XP_001597247.1| hypothetical protein SS1G_01441 [Sclerotinia sclerotiorum 1980] gi|154696777|gb|EDN96515.1| hypothetical protein SS1G_01441 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1390 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1020 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1063 >gi|322820539|gb|EFZ27127.1| transitional endoplasmic reticulum ATPase, putative [Trypanosoma cruzi] Length = 778 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 502 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 561 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 562 LFFDELDSVA 571 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108 +L GPPG GKT +A+ VA E G F +GP I G+L E + Sbjct: 229 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRKAFEEAEKNAPSI 288 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 289 VFIDEIDSIA 298 >gi|330936009|ref|XP_003305212.1| hypothetical protein PTT_17994 [Pyrenophora teres f. teres 0-1] gi|311317861|gb|EFQ86690.1| hypothetical protein PTT_17994 [Pyrenophora teres f. teres 0-1] Length = 1416 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%) Query: 38 SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 S ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1051 SRPELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1097 >gi|289192114|ref|YP_003458055.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] gi|288938564|gb|ADC69319.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] Length = 864 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 5/50 (10%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 + RP+TL++ GQ E LK ++E +++ H+LF GPPG+GK Sbjct: 6 VEKYRPKTLDDIVGQDEIVKRLKKYVEK-----KSMPHLLFSGPPGVGKC 50 >gi|313813440|gb|EFS51154.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL025PA1] Length = 429 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 37/135 (27%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFI--------------EAAKARAEALD----HV 57 L RPR L EF GQ EA L V + A +A + ++ ++ Sbjct: 62 LPRPRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEVNVPHARRAEDDGVELGKSNI 121 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103 L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181 Query: 104 EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 182 AERGIVYIDEIDKVA 196 >gi|212704617|ref|ZP_03312745.1| hypothetical protein DESPIG_02680 [Desulfovibrio piger ATCC 29098] gi|212672016|gb|EEB32499.1| hypothetical protein DESPIG_02680 [Desulfovibrio piger ATCC 29098] Length = 425 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 30/134 (22%) Query: 15 EDADISLLRPRT----LEEFT-GQVEACSNLKVFIEAAKAR---AEAL--------DHVL 58 E+AD LL P+ L+E+ GQ EA L V + R A+AL ++L Sbjct: 57 EEADERLLSPQEIKARLDEYVIGQTEAKKILSVAVHNHYKRVFFADALGDDVELEKSNIL 116 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE------ 104 VGP G GKT LA+ +A+ L V F + +AG L LL N + Sbjct: 117 LVGPSGSGKTLLAKTLAKVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDIEAA 176 Query: 105 DRDVLFIDEIHRLS 118 + +++IDEI ++S Sbjct: 177 SKGIIYIDEIDKIS 190 >gi|167999153|ref|XP_001752282.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696677|gb|EDQ83015.1| predicted protein [Physcomitrella patens subsp. patens] Length = 550 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G NF + +G I GD L +L V Sbjct: 288 VLLFGPPGTGKTLLAKAVATEAGANFINITGSTITSKWFGDAEKLTKSLFSLAKKLAPAV 347 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 348 IFVDEVDSL 356 >gi|169603057|ref|XP_001794950.1| hypothetical protein SNOG_04535 [Phaeosphaeria nodorum SN15] gi|160706319|gb|EAT88295.2| hypothetical protein SNOG_04535 [Phaeosphaeria nodorum SN15] Length = 1313 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%) Query: 38 SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 S ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 962 SRPELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1008 >gi|85375691|ref|YP_459753.1| cell division cycle protein [Erythrobacter litoralis HTCC2594] gi|84788774|gb|ABC64956.1| Cell division cycle protein [Erythrobacter litoralis HTCC2594] Length = 772 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG---DLAALLTNLEDRD-----V 108 VL GPPG GKT LAQ VA E NF +GP I +G AL E+ + Sbjct: 243 VLLHGPPGTGKTRLAQAVANESDANFSIINGPEIMGSGYGDSEKALREVFENASKNAPAI 302 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 303 IFIDEIDSIA 312 >gi|2853003|gb|AAC02215.1| valosin-containing protein homolog [Trypanosoma brucei] gi|261332619|emb|CBH15614.1| Transitional endoplasmic reticulum ATPase,putative [Trypanosoma brucei gambiense DAL972] Length = 780 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 503 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 562 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 563 LFFDELDSVA 572 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN--LEDRD----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ L N +E + Sbjct: 230 ILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRNAFVESEKNAPAI 289 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 290 IFIDEIDSIA 299 >gi|71747532|ref|XP_822821.1| valosin-containing protein homolog [Trypanosoma brucei TREU927] gi|70832489|gb|EAN77993.1| valosin-containing protein homolog [Trypanosoma brucei] Length = 780 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 503 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 562 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 563 LFFDELDSVA 572 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN--LEDRD----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ L N +E + Sbjct: 230 ILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRNAFVESEKNAPAI 289 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 290 IFIDEIDSIA 299 >gi|66357928|ref|XP_626142.1| nuclear VCP like protein with 2 AAA ATpase domains [Cryptosporidium parvum Iowa II] gi|46227286|gb|EAK88236.1| nuclear VCP like protein with 2 AAA ATpase domains [Cryptosporidium parvum Iowa II] Length = 695 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 23/37 (62%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 E VL GPPG GKT LA+ +A+E G NF S GP Sbjct: 440 ETPSGVLLYGPPGCGKTLLAKAIAKESGANFISIRGP 476 Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDVLFIDEI 114 VL GPPG GK+ L+ +A ELG+ F SGP I +G A L L D + E+ Sbjct: 127 VLLQGPPGTGKSYLSMCIAGELGLPFFKLSGPNIINGVSGTSEASLRKLFDDAI----EM 182 Query: 115 HRLSIIVEEI 124 II++EI Sbjct: 183 APCLIIIDEI 192 >gi|327310634|ref|YP_004337531.1| AAA family ATPase [Thermoproteus uzoniensis 768-20] gi|326947113|gb|AEA12219.1| AAA family ATPase, possible cell division control protein cdc48 [Thermoproteus uzoniensis 768-20] Length = 755 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 17/118 (14%) Query: 24 PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR E G +E A ++ +E E H +L GPPG GKT LA+ V Sbjct: 175 PRVTWEDIGDLEEAKQKIRELVELPLRHPELFKHLGIEPPKGILLYGPPGTGKTLLAKAV 234 Query: 75 ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 A E F + +GP I G+ A L + D ++FIDEI ++ EE+ Sbjct: 235 ANEANAYFIAINGPEIMSKYYGESEAKLREIFDEAKKNAPAIIFIDEIDAIAPKREEV 292 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 +L GPPG+GKT A+ VA E G NF + GP V++K G+ + + R V Sbjct: 505 ILLYGPPGVGKTMFAKAVATESGANFIAVRGPEVLSKWVGESEKAVREIFKRARMAAPCV 564 Query: 109 LFIDEIHRLS 118 +F DEI ++ Sbjct: 565 VFFDEIDSIA 574 >gi|225556425|gb|EEH04713.1| peroxisomal biogenesis factor 6 [Ajellomyces capsulatus G186AR] Length = 1509 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1062 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1105 >gi|238484815|ref|XP_002373646.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative [Aspergillus flavus NRRL3357] gi|220701696|gb|EED58034.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative [Aspergillus flavus NRRL3357] Length = 1173 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 900 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 943 >gi|154284786|ref|XP_001543188.1| peroxisomal biogenesis factor 6 [Ajellomyces capsulatus NAm1] gi|150406829|gb|EDN02370.1| peroxisomal biogenesis factor 6 [Ajellomyces capsulatus NAm1] Length = 1442 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1074 ILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1105 >gi|219849757|ref|YP_002464190.1| ATP-dependent protease La [Chloroflexus aggregans DSM 9485] gi|219544016|gb|ACL25754.1| ATP-dependent protease La [Chloroflexus aggregans DSM 9485] Length = 812 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 99/244 (40%), Gaps = 51/244 (20%) Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNL 103 FVGPPG+GKT+L Q +AR LG +F R + G V +A G + L Sbjct: 369 FVGPPGVGKTSLGQSIARALGRSFVRMSLGGVRDEAELRGFRRTYIGSQPGRIIQELRRA 428 Query: 104 EDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 D V+ +DEI +L I E+L P D + ++ +LSR Sbjct: 429 GTADPVILLDEIDKLGIDYRGDPAAALLEVLDPEQNHTFTDHYL-------NLPFDLSRV 481 Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED------LKTIVQRGAKLTGLAVTDEAA 208 +A + L+DR + I L+ Y IED L +V R + GL + Sbjct: 482 LFLATANTWDTVPPALRDRMEV-IELSGY-IEDEKVQIALSHLVPRQLRANGLRPDEATV 539 Query: 209 CEIAMRS-----------RGTPRIAGRLLRRV-RDFAEVAHAKTITREIADAALLRLAID 256 E A+R R R G +LR+V R +E + DAA +R A+ Sbjct: 540 SEEALRCIINEYTREAGVRNLERSIGAVLRKVARRLSEGEIDPANLPFVVDAAFVRTALG 599 Query: 257 KMGF 260 + F Sbjct: 600 RPRF 603 >gi|157167438|ref|XP_001660693.1| metalloprotease m41 ftsh [Aedes aegypti] gi|108873589|gb|EAT37814.1| metalloprotease m41 ftsh [Aedes aegypti] Length = 598 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 56/122 (45%), Gaps = 19/122 (15%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFV 60 + V + DIS+ T E+ G EA LK +E K + + VL V Sbjct: 140 IGNQVEVDPEDISV----TFEDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKLPKGVLLV 195 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFID 112 GPPG GKT LA+ VA E GV F +GP V A + L ++R V+FID Sbjct: 196 GPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFID 255 Query: 113 EI 114 EI Sbjct: 256 EI 257 >gi|303327632|ref|ZP_07358073.1| cell division protein FtsH [Desulfovibrio sp. 3_1_syn3] gi|302862572|gb|EFL85505.1| cell division protein FtsH [Desulfovibrio sp. 3_1_syn3] Length = 681 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE + VE SN K F + VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 155 EELSEVVEFLSNPKKFTRLGGRIPKG---VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 211 >gi|302853734|ref|XP_002958380.1| hypothetical protein VOLCADRAFT_121711 [Volvox carteri f. nagariensis] gi|300256260|gb|EFJ40530.1| hypothetical protein VOLCADRAFT_121711 [Volvox carteri f. nagariensis] Length = 1021 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 ++F GPPG GKT LA+ +A E GV F S+ G + AG AA + NL + + Sbjct: 333 IIFQGPPGTGKTYLARAIAGEAGVPFFSSVGSEFVEMFAGVAAARVNNLFYNARKKAPAI 392 Query: 109 LFIDEI 114 +FIDEI Sbjct: 393 IFIDEI 398 >gi|284176047|ref|ZP_06390016.1| TATA binding protein (TBP)-interacting protein (TIP49-like), putative [Sulfolobus solfataricus 98/2] Length = 452 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ EA V ++ K + +LFVGPPG GKT LA +ARELG Sbjct: 39 LVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELG 88 >gi|156977714|ref|YP_001448620.1| hypothetical protein VIBHAR_06502 [Vibrio harveyi ATCC BAA-1116] gi|156529308|gb|ABU74393.1| hypothetical protein VIBHAR_06502 [Vibrio harveyi ATCC BAA-1116] Length = 1620 Score = 43.9 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 12/101 (11%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIE---------AAKAR 50 + R LLS ++ED +S +PR L F ++ + S L + + K R Sbjct: 1198 LSQRAQLLSS--AKEDFRLSEFKPRPLTSFVRNKLISESYLPLIGDNFAKQMGTLGDKKR 1255 Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 + + +L + PPG GKTTL + +A +LG+ F +GP I Sbjct: 1256 TDLMGMLLLISPPGYGKTTLIEYIAHKLGLVFMKINGPSIG 1296 >gi|327537415|gb|EGF24144.1| cell division protein FtsH [Rhodopirellula baltica WH47] Length = 728 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 15/109 (13%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAR 76 P T E+ G EA ++ ++ K + ++L VL VGPPG GKT LA+ +A Sbjct: 247 PTTFEDVAGIEEAVDEVREVVDFLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAKAIAG 306 Query: 77 ELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRL 117 E GV F S SG V A + + T +R ++FIDE+ L Sbjct: 307 EAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDAL 355 >gi|323473727|gb|ADX84333.1| TIP49 domain protein [Sulfolobus islandicus REY15A] Length = 452 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ EA V ++ K + +LFVGPPG GKT LA +ARELG Sbjct: 39 LVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELG 88 >gi|231292279|dbj|BAH58757.1| peroxin 6 [Alternaria alternata] Length = 1444 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%) Query: 38 SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 S ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1050 SRPELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1096 >gi|225683265|gb|EEH21549.1| peroxisomal biogenesis factor 6 [Paracoccidioides brasiliensis Pb03] Length = 1477 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1035 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1078 >gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7] gi|166225156|sp|A6VJ61|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7] Length = 315 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+TL E G E L ++E +++ H+LF G PG+GKTT A +A++L G Sbjct: 10 RPQTLSEVVGHHEIIKRLTNYVEK-----KSMPHLLFSGSPGVGKTTAALALAKDLYGET 64 Query: 82 FRST 85 +R Sbjct: 65 WREN 68 >gi|30248910|ref|NP_840980.1| ftsH; cell division protein [Nitrosomonas europaea ATCC 19718] gi|30138527|emb|CAD84817.1| ftsH; cell division protein [Nitrosomonas europaea ATCC 19718] Length = 619 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 8/92 (8%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 VE + LK E ++ A +L VGPPG GKT LA+ VA E GV F S SG + Sbjct: 176 VEIVNFLKNPKEYSRLGGRAPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM 235 Query: 93 -AGDLAALLTNLEDR------DVLFIDEIHRL 117 G AA + +L ++ ++FIDE+ L Sbjct: 236 FVGVGAARVRDLFEQARQMAPAIIFIDELDSL 267 >gi|315223833|ref|ZP_07865681.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga ochracea F0287] gi|314946163|gb|EFS98164.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga ochracea F0287] Length = 363 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 32/237 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP++ + GQ + L IE A+AL LF GP G+GKTT A+++A+++ Sbjct: 12 RPQSFRDVVGQQAITNTLLNAIENNHL-AQAL---LFTGPRGVGKTTCARILAKKIN--- 64 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------------SIIVEEILYPA 128 TSG + D A + L+ +D+I +L I++E+ + Sbjct: 65 EQTSG--VEDENDFAFNVFELDAASNNSVDDIRKLIEQVRIPPQVGKYKVYIIDEVHMLS 122 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 F L E P ++ I ATT + + R I I D+ Sbjct: 123 TAAFNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI-FDFKRITINDI 173 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 + ++ A+ G+ DEA IA ++ G R A + RV F+ + T EI Sbjct: 174 REYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFSGEKITRQATSEI 230 >gi|310790808|gb|EFQ26341.1| replication factor C [Glomerella graminicola M1.001] Length = 383 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+TL + T Q + L+ ++A+ L H+LF GPPG GKT+ +A+EL Sbjct: 36 VEKYRPKTLSDVTAQDHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTVLALAKEL 90 >gi|261600946|gb|ACX90549.1| TIP49 domain protein [Sulfolobus solfataricus 98/2] Length = 452 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ EA V ++ K + +LFVGPPG GKT LA +ARELG Sbjct: 39 LVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELG 88 >gi|258575415|ref|XP_002541889.1| peroxisomal biogenesis factor 6 [Uncinocarpus reesii 1704] gi|237902155|gb|EEP76556.1| peroxisomal biogenesis factor 6 [Uncinocarpus reesii 1704] Length = 1399 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1059 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1102 >gi|227826648|ref|YP_002828427.1| TIP49 domain protein [Sulfolobus islandicus M.14.25] gi|229583812|ref|YP_002842313.1| TIP49 domain protein [Sulfolobus islandicus M.16.27] gi|238618734|ref|YP_002913559.1| TIP49 domain protein [Sulfolobus islandicus M.16.4] gi|227458443|gb|ACP37129.1| TIP49 domain protein [Sulfolobus islandicus M.14.25] gi|228018861|gb|ACP54268.1| TIP49 domain protein [Sulfolobus islandicus M.16.27] gi|238379803|gb|ACR40891.1| TIP49 domain protein [Sulfolobus islandicus M.16.4] gi|323476379|gb|ADX81617.1| TIP49 domain protein [Sulfolobus islandicus HVE10/4] Length = 452 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ EA V ++ K + +LFVGPPG GKT LA +ARELG Sbjct: 39 LVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELG 88 >gi|281422657|ref|ZP_06253656.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella copri DSM 18205] gi|281403327|gb|EFB34007.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella copri DSM 18205] Length = 761 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 22/151 (14%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVV 74 ++ LR R L++ GQ +A + + AKA + L +LFVGP G+GKT +A+ + Sbjct: 465 LATLRQRILDKIYGQDKAVDKVVEAVMMAKAGLTDDDKPLASLLFVGPTGVGKTEVARQL 524 Query: 75 ARELGVNF------RSTSGPVIAKAGDLAALLTNLED------------RDVLFIDEIHR 116 A+ELG+ T +AK A ED VL +DEI + Sbjct: 525 AKELGIELVRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCVLLLDEIEK 584 Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 + IL M+ +L G+ R+V Sbjct: 585 AHSDIYNILLQVMDYARLTDNKGQKADFRNV 615 >gi|78357487|ref|YP_388936.1| Lon-A peptidase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219892|gb|ABB39241.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 809 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 + F GPPG+GKT+L + +AR LG F+ S + A G + + Sbjct: 385 LCFSGPPGVGKTSLGRSIARALGRKFQRISLGGMRDEAEIRGHRRTYIGAMPGRIIQTIK 444 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 L R+ V+ +DEI +L S + E+L P ++F +V +LS Sbjct: 445 QLGTRNPVIMLDEIDKLGSDFRGDPSSALLEVLDPE-QNFSF------SDHYLNVPFDLS 497 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + I ++ + PL+DR I IR+ Y +++ I +R Sbjct: 498 KVMFICTANQLETIPAPLRDRMEI-IRIPGYTMQEKAKIARR 538 >gi|67524935|ref|XP_660529.1| hypothetical protein AN2925.2 [Aspergillus nidulans FGSC A4] gi|40744320|gb|EAA63496.1| hypothetical protein AN2925.2 [Aspergillus nidulans FGSC A4] Length = 1513 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1049 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1092 >gi|328870426|gb|EGG18800.1| cell division cycle protein 48 [Dictyostelium fasciculatum] Length = 798 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ + + L D+ V Sbjct: 511 VLFYGPPGCGKTLLAKAIASECQANFISIKGPELLTMWFGESESNVRELFDKARQAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDSIA 307 >gi|325087437|gb|EGC40747.1| peroxisomal biogenesis factor 6 [Ajellomyces capsulatus H88] Length = 1509 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1062 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1105 >gi|297527311|ref|YP_003669335.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM 12710] gi|297256227|gb|ADI32436.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM 12710] Length = 734 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 17/133 (12%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLF 59 S V +E + + + P+ E G +E A ++ +E E H +L Sbjct: 169 SEPVKEEVIERARMIPKVTWEDIGDLEEAKQKIREIVELPLKHPELFKHLGIEPPKGILL 228 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL---EDRD---VLFI 111 GPPG GKT LA+ +A E+G F + +GP I G+ L + +R+ ++FI Sbjct: 229 HGPPGTGKTLLAKALANEIGAYFTAINGPEIMSKFYGESEQRLREIFEEAERNAPAIIFI 288 Query: 112 DEIHRLSIIVEEI 124 DEI ++ EE+ Sbjct: 289 DEIDSIAPKREEV 301 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 21/39 (53%), Positives = 24/39 (61%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 EA +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 495 EAPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 533 >gi|220678160|emb|CAX13256.1| nuclear VCP-like [Danio rerio] Length = 796 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G+NF S GP Sbjct: 557 LLLAGPPGCGKTLLAKAVANESGLNFISVKGP 588 Score = 35.8 bits (81), Expect = 9.5, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109 L GPPG GKT LAQ VA E + S P V +G+ L L ++ +L Sbjct: 264 LLHGPPGCGKTLLAQAVAGETALPLLKISAPELVSGVSGESEQKLRELFEQAISSAPCIL 323 Query: 110 FIDEI 114 FIDEI Sbjct: 324 FIDEI 328 >gi|34540240|ref|NP_904719.1| ATP-dependent protease ATP-binding subunit ClpX [Porphyromonas gingivalis W83] gi|188995414|ref|YP_001929666.1| ATP-dependent protease ATP-binding subunit ClpX [Porphyromonas gingivalis ATCC 33277] gi|46576403|sp|Q7MX10|CLPX_PORGI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238689262|sp|B2RL24|CLPX_PORG3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|34396552|gb|AAQ65618.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas gingivalis W83] gi|188595094|dbj|BAG34069.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Porphyromonas gingivalis ATCC 33277] Length = 411 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 33/139 (23%) Query: 9 SRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR---AEALD----- 55 + N+ +ED L RP ++EF GQ +A L V + R E D Sbjct: 55 TNNLKRED----LPRPIEIKEFLDSYVIGQDDAKRFLSVAVYNHYKRLLQQEDSDGVEIE 110 Query: 56 --HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL------ 103 +++ VGP G GKT LA+ +A+ L V F V+ +AG D+ ++LT L Sbjct: 111 KSNIIMVGPTGTGKTLLARTIAKMLHVPFAVVDATVLTEAGYVGEDIESILTRLLQAADY 170 Query: 104 ----EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 171 DVKQAERGIVFIDEIDKIA 189 >gi|332653692|ref|ZP_08419436.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16] gi|332516778|gb|EGJ46383.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16] Length = 643 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108 VL VGPPG GKT +A+ VA E GV+F S SG V G A+ + +L D+ + Sbjct: 224 VLLVGPPGTGKTLIAKAVAGEAGVHFLSISGSDFVELYVGVGASRVRDLFDQAKKEAPAI 283 Query: 109 LFIDEI 114 +FIDEI Sbjct: 284 VFIDEI 289 >gi|306820901|ref|ZP_07454521.1| AAA family ATPase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551015|gb|EFM38986.1| AAA family ATPase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 424 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 16/147 (10%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L+RP L++ GQ E + + I+ A +R + +++F G PG+GKTT+A+++A + Sbjct: 13 LVRPHKLQDVFGQ-EHITAKGMIIDMAISRNN-IPNMIFYGVPGVGKTTVAKIIAENTTM 70 Query: 81 ---NFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F +T K D+ ++ + D R +++IDE+ + +++L +E Sbjct: 71 PIHMFNATH----CKTDDVRKVILSYTDGIFKQRPLIYIDELQNFNKKQQQMLLDYIETG 126 Query: 133 QLDLM--VGEGPSARSVKINLSRFTLI 157 Q+ + E P K LSR ++ Sbjct: 127 QIGFIGATTENPYQYIYKALLSRLIVL 153 >gi|302672248|ref|YP_003832208.1| AAA family ATPase [Butyrivibrio proteoclasticus B316] gi|302396721|gb|ADL35626.1| ATPase AAA family [Butyrivibrio proteoclasticus B316] Length = 400 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 62/273 (22%) Query: 40 LKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVAR---ELGVNFRST--- 85 L F++ KAR + +L H++F G PG GKTT+A+++AR ++GV + Sbjct: 140 LAAFVKVQKARQDQGLKSVPVSL-HLVFTGNPGTGKTTVARIIARIYKQIGVLSKGQLVE 198 Query: 86 ---SGPVIAKAGDLAALLTNLEDR---DVLFIDEIHRLSIIVE-------EILYPAMEDF 132 SG V G A + + VLFIDE + LS + + + AMED Sbjct: 199 VDRSGLVAGYVGQTAIKTSEQIKKAKGGVLFIDEAYALSQKDDAFGQEAIDTILKAMEDN 258 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATT---RVGLLTNP-LQDRFGIPIRLNFYEIEDL 188 + D +V ++A T + + +NP L+ RF I Y I++L Sbjct: 259 RDDFVV-----------------IVAGYTEPMKKFIESNPGLKSRFNKYIEFPDYNIDEL 301 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248 + I V ++ +I I + + + +FA + + EI Sbjct: 302 EEIFYMNCDKYDYKVDEDVKHQI------RALITAKKIENIDNFANAREVRNLFEEIITN 355 Query: 249 ALLRLAI-------DKMGFDQLDLRYLTMIARN 274 R++ D M + DL L++IA N Sbjct: 356 QARRISTIENPTGNDMMTILREDLEDLSIIADN 388 >gi|227829289|ref|YP_002831068.1| TIP49 domain protein [Sulfolobus islandicus L.S.2.15] gi|284996646|ref|YP_003418413.1| TIP49-like protein [Sulfolobus islandicus L.D.8.5] gi|227455736|gb|ACP34423.1| TIP49 domain protein [Sulfolobus islandicus L.S.2.15] gi|284444541|gb|ADB86043.1| TIP49-like protein [Sulfolobus islandicus L.D.8.5] Length = 452 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ EA V ++ K + +LFVGPPG GKT LA +ARELG Sbjct: 39 LVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELG 88 >gi|295672323|ref|XP_002796708.1| peroxisomal biogenesis factor 6 [Paracoccidioides brasiliensis Pb01] gi|226283688|gb|EEH39254.1| peroxisomal biogenesis factor 6 [Paracoccidioides brasiliensis Pb01] Length = 1450 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1008 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1051 >gi|198412134|ref|XP_002122137.1| PREDICTED: similar to valosin-containing protein, partial [Ciona intestinalis] Length = 256 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 188 VLFYGPPGCGKTLLAKAIANECQANFISIKGPEMLTMWFGESEANVREVFDKARQAAPCV 247 Query: 109 LFIDEIHRL 117 LF DE+ + Sbjct: 248 LFFDELDSI 256 Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 94 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRRAFEEAEKNAPAI 153 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 154 IFIDELDAIA 163 >gi|254168504|ref|ZP_04875348.1| ATPase, AAA family protein [Aciduliprofundum boonei T469] gi|197622559|gb|EDY35130.1| ATPase, AAA family protein [Aciduliprofundum boonei T469] Length = 1009 Score = 43.5 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF-RS 84 TLE+ E ++ IE R VLF GPPG+GKT +A+ +A ELG + Sbjct: 757 TLEDVILDEETMEEIRDIIE--DVRDGEATSVLFYGPPGVGKTRIAEAMAGELGYELIKI 814 Query: 85 TSGPVIAK-AGDLAALLTNLED-----RDVLFIDEIHRL 117 T +++K G+ L D R VLFIDEI L Sbjct: 815 TPSEILSKWVGESEKNLKEYFDKAKNGRVVLFIDEIDGL 853 >gi|168022662|ref|XP_001763858.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684863|gb|EDQ71262.1| predicted protein [Physcomitrella patens subsp. patens] Length = 456 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ VA E G NF + +G I A L L +L + V Sbjct: 193 VLLFGPPGTGKTLLAKAVATEAGANFINITGSTITSKWFGDAEKLTKALFSLARKLSPAV 252 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 253 IFVDEVDSL 261 >gi|238917376|ref|YP_002930893.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium eligens ATCC 27750] gi|259491257|sp|C4Z1T5|CLPX_EUBE2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238872736|gb|ACR72446.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium eligens ATCC 27750] Length = 422 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 28/129 (21%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR---AEALD------HVLFVGPP 63 +I+LL+P+ ++EF GQ EA L V + R LD ++L +GP Sbjct: 64 NINLLKPKQIKEFLDDYVIGQDEAKKVLAVAVYNHYKRIMSQSDLDVELQKSNILMLGPT 123 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------L 109 G GKT LAQ +AR L V F + +AG D+ +L L D DV + Sbjct: 124 GSGKTFLAQNLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDVEKAQYGII 183 Query: 110 FIDEIHRLS 118 +IDEI +++ Sbjct: 184 YIDEIDKIT 192 >gi|126348248|emb|CAJ89969.1| putative sporulation protein K-like protein [Streptomyces ambofaciens ATCC 23877] Length = 1107 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 38/169 (22%) Query: 55 DHVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----- 106 +H++F GPPG GKTT+A++ AR LGV R S +A+A + + + R Sbjct: 880 NHLVFSGPPGTGKTTVARLYARLLHSLGVLPRD-SLVEVARADLVGQYVGHTAQRTKDVF 938 Query: 107 -----DVLFIDEIHRLSIIVE---------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 VLF+DE + L+ + L MED + +++V + Sbjct: 939 TSALGGVLFVDEAYTLTPEGSSNDFGREAVDTLLKLMEDHRDEIVV----VVAGYTEEME 994 Query: 153 RFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 RF L +NP L RF +R Y ++L TIV R A +G Sbjct: 995 RF----------LASNPGLTSRFSKFVRFEDYSTDELVTIVSRHAAASG 1033 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 38/161 (23%) Query: 56 HVLFVGPPGLGKTTLAQV---VARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------ 106 H++F GPPG GKTT+A++ + +LGV RS +A+A +A ++ + Sbjct: 601 HLIFAGPPGTGKTTVARLYGGILADLGV-LRSGHLVEVARADLVAQVIGGTAIKTTEAFT 659 Query: 107 ----DVLFIDEIHRLSIIVE---------EILYPAMEDFQLDLMVGEGPSARSVKINLSR 153 VLFIDE + L++ + L MED + D++V A + Sbjct: 660 SALGGVLFIDEAYTLTVEGSSNDFGREAVDTLLKLMEDHRDDVVV----VAAGYSEQMES 715 Query: 154 FTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQ 193 F L NP L RF + Y +++L TI + Sbjct: 716 F----------LTANPGLASRFSRTVEFGNYAVQELVTITE 746 >gi|86607410|ref|YP_476173.1| AAA family ATPase [Synechococcus sp. JA-3-3Ab] gi|86555952|gb|ABD00910.1| ATPase, AAA family [Synechococcus sp. JA-3-3Ab] Length = 629 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 27/118 (22%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 ++ V QE + SLL P E+ A+A+A +L GPPG GKT Sbjct: 380 AKQVLQEAIEGSLLHPELYEQ-------------------AQAQAPKGILLSGPPGTGKT 420 Query: 69 TLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VLFIDEIHRLS 118 LA+ +A + NF + SGP +++K G + L R V+FIDEI L+ Sbjct: 421 LLAKAIASQAKANFIAVSGPELLSKWVGSSEQAVRELFARARQCAPCVIFIDEIDTLA 478 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL VGPPG GKT A+ +A LGVN+ + GP +I K G+ A L + ++ + Sbjct: 143 VLLVGPPGTGKTLTARALAESLGVNYIALVGPELIGKYYGEAEARLRQVFEKAAKSAPCL 202 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 203 VFIDEIDAL 211 >gi|331268211|ref|YP_004394703.1| Sporulation protease LonC [Clostridium botulinum BKT015925] gi|329124761|gb|AEB74706.1| Sporulation protease LonC [Clostridium botulinum BKT015925] Length = 635 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 81/211 (38%), Gaps = 60/211 (28%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 LS N+ +S+LRP++ E GQ A +L +K + H++ GPPG+GK Sbjct: 161 LSNNI------LSMLRPQSFSEIVGQERAIKSL-----VSKLASPYPQHIILYGPPGVGK 209 Query: 68 TTLAQVVAREL------------------GVNFR------------STSGPVIAKAG-DL 96 TT A++ E+ G R S P+ + DL Sbjct: 210 TTAARLALEEVKKIKHTPFDEDGKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDL 269 Query: 97 AAL--------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSV 147 A + L VLFIDEI L I++ L +ED +++ P ++ Sbjct: 270 AEIGVPEPKPGLVTEAHGGVLFIDEIGELDDILQNKLLKVLEDKRVEFSSSYYDPDDENI 329 Query: 148 KINL---------SRFTLIAATTRVGLLTNP 169 + + F LI ATTR NP Sbjct: 330 PKYIKYLFENGAPADFVLIGATTREPKDINP 360 >gi|327305303|ref|XP_003237343.1| peroxisomal biogenesis factor 6 [Trichophyton rubrum CBS 118892] gi|326460341|gb|EGD85794.1| peroxisomal biogenesis factor 6 [Trichophyton rubrum CBS 118892] Length = 1422 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1080 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1123 >gi|317056461|ref|YP_004104928.1| AAA ATPase central domain-containing protein [Ruminococcus albus 7] gi|315448730|gb|ADU22294.1| AAA ATPase central domain protein [Ruminococcus albus 7] Length = 426 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 16/146 (10%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+TL+E GQ + L+ IE+ + +++F GP G+GKTT+A+ +A Sbjct: 9 IRPKTLDEIVGQPHLMGVGKPLRRIIESG-----TIPNLIFYGPSGVGKTTIARFIAENA 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + +G A D+ ++ E + +L++DEI L+ ++ L +E+ + Sbjct: 64 NMTMFKLNG-TSASVADIKQIIAETEMIGGMNGILLYLDEIQYLNKKQQQSLLEYIENGK 122 Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157 + L+ E P +SR T+ Sbjct: 123 ITLISSTTENPYFYVYNAIISRSTVF 148 >gi|119195945|ref|XP_001248576.1| peroxisomal biogenesis factor 6 [Coccidioides immitis RS] Length = 1383 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1032 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1075 >gi|20808757|ref|NP_623928.1| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4] gi|20517401|gb|AAM25532.1| ATP-dependent Zn proteases [Thermoanaerobacter tengcongensis MB4] Length = 611 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 47/95 (49%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE K FIE A VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 171 EELQEIVEFLKYPKKFIELG---ARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISG 227 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L ++ ++FIDEI Sbjct: 228 SDFVEMFVGVGAARVRDLFEQAKKNAPCIVFIDEI 262 >gi|323697669|ref|ZP_08109581.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio sp. ND132] gi|323457601|gb|EGB13466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio desulfuricans ND132] Length = 418 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 32/144 (22%) Query: 7 LLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNL---------KVFIEAAKARAE 52 + +S+E D LL P+ ++E GQ +A L +VF AA + + Sbjct: 47 MAQETISEEFEDGRLLPPQEIKELLDQYVIGQEQAKKILSVAVHNHYKRVFYAAANSGGD 106 Query: 53 ALD----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALL 100 ++ ++L +GP G GKT LAQ +AR L V F + +AG L LL Sbjct: 107 DVEIDKSNILLIGPTGSGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLL 166 Query: 101 TNLE------DRDVLFIDEIHRLS 118 N + R +++IDEI +++ Sbjct: 167 QNADYDIDAASRGIIYIDEIDKVA 190 >gi|261203255|ref|XP_002628841.1| peroxisomal biogenesis factor 6 [Ajellomyces dermatitidis SLH14081] gi|239586626|gb|EEQ69269.1| peroxisomal biogenesis factor 6 [Ajellomyces dermatitidis SLH14081] Length = 1497 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1058 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1101 >gi|226288260|gb|EEH43772.1| peroxisomal biogenesis factor 6 [Paracoccidioides brasiliensis Pb18] Length = 1477 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1035 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1078 >gi|229816586|ref|ZP_04446885.1| hypothetical protein COLINT_03644 [Collinsella intestinalis DSM 13280] gi|229807921|gb|EEP43724.1| hypothetical protein COLINT_03644 [Collinsella intestinalis DSM 13280] Length = 747 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL VGPPG GKT LA+ VA E GV F + SG V A + L N +++ + Sbjct: 250 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSEFVEMFVGVGASRVRDLFKNAKEQSPSI 309 Query: 109 LFIDEI 114 +FIDEI Sbjct: 310 IFIDEI 315 >gi|15920793|ref|NP_376462.1| TATA-binding protein-interacting protein [Sulfolobus tokodaii str. 7] gi|15621577|dbj|BAB65571.1| 452aa long hypothetical TATA-binding protein-interacting protein [Sulfolobus tokodaii str. 7] Length = 452 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ EA + ++ K A VLFVGPPG GKT LA +A+ELG Sbjct: 39 LVGQTEAREAAGIVVQLIKQGKMAGKGVLFVGPPGTGKTALAVAIAKELG 88 >gi|320040362|gb|EFW22295.1| peroxisome biosynthesis protein Peroxin-6 [Coccidioides posadasii str. Silveira] Length = 1383 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1032 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1075 >gi|313673002|ref|YP_004051113.1| ATP-dependent proteinase [Calditerrivibrio nitroreducens DSM 19672] gi|312939758|gb|ADR18950.1| ATP-dependent proteinase [Calditerrivibrio nitroreducens DSM 19672] Length = 768 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 91/232 (39%), Gaps = 76/232 (32%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPV-------IA 91 + FVGPPG+GKT+LA+ +A LG F R+ G + I Sbjct: 348 ICFVGPPGVGKTSLAKSIAESLGRRFVRVSLGGLRDEAEIRGHRRTYIGALPGKIVQGIK 407 Query: 92 KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD----LMVGEGPSAR-- 145 KAG + V +DEI +LS DF+ D L+ P Sbjct: 408 KAGSMNP---------VFLLDEIDKLS-----------SDFRGDPASALLEALDPEQNIN 447 Query: 146 ------SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT----IVQRG 195 V+++LS+ I R+ + +PL+DR + + E+E L I+ + Sbjct: 448 FVDHYLEVELDLSKVFFITTANRLDTIPHPLRDRMEVINLSGYTELEKLHIAKDFIIPKQ 507 Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTITREIA 246 K+ ++G +I G +L +R + + A + + REIA Sbjct: 508 LKIHN--------------AQGKIKITDGAILDVIRHYTKEAGVRNLEREIA 545 >gi|315046408|ref|XP_003172579.1| peroxisomal biogenesis factor 6 [Arthroderma gypseum CBS 118893] gi|311342965|gb|EFR02168.1| peroxisomal biogenesis factor 6 [Arthroderma gypseum CBS 118893] Length = 1417 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1077 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1120 >gi|259486137|tpe|CBF83738.1| TPA: microbody (peroxisome) biogenesis protein peroxin 6 (Eurofung) [Aspergillus nidulans FGSC A4] Length = 1476 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1049 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1092 >gi|86610266|ref|YP_479028.1| AAA family ATPase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558808|gb|ABD03765.1| ATPase, AAA family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 628 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 8/79 (10%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLED 105 +A+A+A +L GPPG GKT LA+ +A + NF + SGP +++K G + L Sbjct: 399 QAQAQAPKGILLSGPPGTGKTLLAKAIASQAKANFIAVSGPELLSKWVGSSEQAVRELFA 458 Query: 106 RD------VLFIDEIHRLS 118 R V+FIDEI L+ Sbjct: 459 RARQCAPCVIFIDEIDTLA 477 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL VGPPG GKT A+ +A LGVN+ + GP +I K G+ A L L ++ + Sbjct: 142 VLLVGPPGTGKTLTARALAESLGVNYIAIVGPELIGKYYGEAEARLRQLFEKAAKSAPCL 201 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 202 VFIDEIDAL 210 >gi|310794195|gb|EFQ29656.1| ATPase [Glomerella graminicola M1.001] Length = 501 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 LF GPPG GK++L+ +A E G++ P +A DL + + R V+ +++I Sbjct: 266 LFYGPPGTGKSSLSVAIAGEFGLDMYEVKIPSVATDADLEQMFQEIPPRCVVLLEDI 322 >gi|296331633|ref|ZP_06874102.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675408|ref|YP_003867080.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis subsp. spizizenii str. W23] gi|296151228|gb|EFG92108.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413652|gb|ADM38771.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis subsp. spizizenii str. W23] Length = 774 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 58/197 (29%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPV-------IA 91 + GPPG+GKT+LA+ +A+ LG F R+ G + + Sbjct: 350 LCLAGPPGVGKTSLAKSIAKSLGREFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 409 Query: 92 KAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPS 143 KAG L V +DEI ++ S + E+L P D + E Sbjct: 410 KAGKLNP---------VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSTFSDHYIEE--- 457 Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQR 194 +LS+ IA + + PL+DR I + E+E L K I + Sbjct: 458 ----TFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEVEKLEIVKDHLLPKQIKEH 513 Query: 195 GAKLTGLAVTDEAACEI 211 G K + L + D+A +I Sbjct: 514 GLKKSNLQLRDQAILDI 530 >gi|302655400|ref|XP_003019489.1| hypothetical protein TRV_06488 [Trichophyton verrucosum HKI 0517] gi|291183216|gb|EFE38844.1| hypothetical protein TRV_06488 [Trichophyton verrucosum HKI 0517] Length = 1118 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 775 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 818 >gi|303321756|ref|XP_003070872.1| peroxin-6, putative [Coccidioides posadasii C735 delta SOWgp] gi|240110569|gb|EER28727.1| peroxin-6, putative [Coccidioides posadasii C735 delta SOWgp] Length = 1383 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1032 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1075 >gi|240273533|gb|EER37053.1| peroxisomal biogenesis factor 6 [Ajellomyces capsulatus H143] Length = 1471 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1036 ILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1067 >gi|239608337|gb|EEQ85324.1| peroxisomal biogenesis factor 6 [Ajellomyces dermatitidis ER-3] Length = 1495 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1056 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1099 >gi|227827645|ref|YP_002829425.1| replication factor C large subunit [Sulfolobus islandicus M.14.25] gi|229584849|ref|YP_002843351.1| replication factor C large subunit [Sulfolobus islandicus M.16.27] gi|259585252|sp|C3N5N1|RFCL_SULIA RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|259585254|sp|C3MVD2|RFCL_SULIM RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|227459441|gb|ACP38127.1| AAA ATPase central domain protein [Sulfolobus islandicus M.14.25] gi|228019899|gb|ACP55306.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.27] Length = 405 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEA---AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RPR+L++ Q A L+ +IE+ K A+A VL GPPG+GKTTLA+ +A + Sbjct: 9 RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKA---VLLHGPPGVGKTTLAEALAHDYN 65 Query: 80 V 80 + Sbjct: 66 L 66 >gi|160933739|ref|ZP_02081127.1| hypothetical protein CLOLEP_02600 [Clostridium leptum DSM 753] gi|156867616|gb|EDO60988.1| hypothetical protein CLOLEP_02600 [Clostridium leptum DSM 753] Length = 660 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 47/95 (49%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE N K F E A VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 189 EELREIVEFLKNPKRFNELG---ARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISG 245 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G A+ + +L D+ ++FIDEI Sbjct: 246 SDFVEMFVGVGASRVRDLFDQAKKNSPCIIFIDEI 280 >gi|327349536|gb|EGE78393.1| peroxisomal biogenesis factor 6 [Ajellomyces dermatitidis ATCC 18188] Length = 1507 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1068 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1111 >gi|326472127|gb|EGD96136.1| peroxisomal biogenesis factor 6 [Trichophyton tonsurans CBS 112818] Length = 1420 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1080 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1123 >gi|296805920|ref|XP_002843784.1| peroxisomal biogenesis factor 6 [Arthroderma otae CBS 113480] gi|238845086|gb|EEQ34748.1| peroxisomal biogenesis factor 6 [Arthroderma otae CBS 113480] Length = 1417 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1076 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1119 >gi|227872254|ref|ZP_03990614.1| M41 family FtsH endopeptidase [Oribacterium sinus F0268] gi|227841901|gb|EEJ52171.1| M41 family FtsH endopeptidase [Oribacterium sinus F0268] Length = 649 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109 L VGPPG GKT LA+ VA E GV F S SG V G AA + +L D+ ++ Sbjct: 233 LLVGPPGTGKTMLAKAVAGEAGVPFFSISGSEFVEMYVGMGAAKVRDLFDQAKKKSPCII 292 Query: 110 FIDEI 114 FIDEI Sbjct: 293 FIDEI 297 >gi|238619813|ref|YP_002914639.1| replication factor C large subunit [Sulfolobus islandicus M.16.4] gi|259585253|sp|C4KHA7|RFCL_SULIK RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|238380883|gb|ACR41971.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.4] Length = 405 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEA---AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RPR+L++ Q A L+ +IE+ K A+A VL GPPG+GKTTLA+ +A + Sbjct: 9 RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKA---VLLHGPPGVGKTTLAEALAHDYN 65 Query: 80 V 80 + Sbjct: 66 L 66 >gi|227830341|ref|YP_002832121.1| replication factor C large subunit [Sulfolobus islandicus L.S.2.15] gi|229579158|ref|YP_002837556.1| replication factor C large subunit [Sulfolobus islandicus Y.G.57.14] gi|284997766|ref|YP_003419533.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5] gi|259585236|sp|C3MQ13|RFCL_SULIL RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|259585591|sp|C3NE95|RFCL_SULIY RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|227456789|gb|ACP35476.1| AAA ATPase central domain protein [Sulfolobus islandicus L.S.2.15] gi|228009872|gb|ACP45634.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.G.57.14] gi|284445661|gb|ADB87163.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5] Length = 405 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEA---AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RPR+L++ Q A L+ +IE+ K A+A VL GPPG+GKTTLA+ +A + Sbjct: 9 RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKA---VLLHGPPGVGKTTLAEALAHDYN 65 Query: 80 V 80 + Sbjct: 66 L 66 >gi|254479639|ref|ZP_05092942.1| ATP-dependent metallopeptidase HflB subfamily protein [Carboxydibrachium pacificum DSM 12653] gi|214034424|gb|EEB75195.1| ATP-dependent metallopeptidase HflB subfamily protein [Carboxydibrachium pacificum DSM 12653] Length = 608 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 47/95 (49%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE K FIE A VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 168 EELQEIVEFLKYPKKFIELG---ARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L ++ ++FIDEI Sbjct: 225 SDFVEMFVGVGAARVRDLFEQAKKNAPCIVFIDEI 259 >gi|71066497|ref|YP_265224.1| ATP-dependent protease ATP-binding subunit ClpX [Psychrobacter arcticus 273-4] gi|123647822|sp|Q4FQB8|CLPX_PSYA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|71039482|gb|AAZ19790.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter arcticus 273-4] Length = 424 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 15/101 (14%) Query: 33 QVEACSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 Q A + K I AA A E A ++L +GP G GKT LAQ +AR L V F + Sbjct: 103 QTLANDSKKAKIGAADAMVELAKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLT 162 Query: 92 KAGDLAALLTNL-------EDRDV-------LFIDEIHRLS 118 +AG + + N+ D DV ++IDEI ++S Sbjct: 163 EAGYVGEDVENIVQKLLQASDYDVSKAEQGIIYIDEIDKIS 203 >gi|302507001|ref|XP_003015457.1| hypothetical protein ARB_06583 [Arthroderma benhamiae CBS 112371] gi|291179029|gb|EFE34817.1| hypothetical protein ARB_06583 [Arthroderma benhamiae CBS 112371] Length = 1423 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1080 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1123 >gi|225442523|ref|XP_002278786.1| PREDICTED: similar to cell division protein FtsH-like [Vitis vinifera] Length = 888 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108 +L GPPG+GKT LA+ VA E GVNF S S + A + AL ++ V Sbjct: 458 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEAKENAPSV 517 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 518 VFIDEL 523 >gi|331237454|ref|XP_003331384.1| hypothetical protein PGTG_12706 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309310374|gb|EFP86965.1| hypothetical protein PGTG_12706 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 818 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 521 VLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 580 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 581 MFFDELDSIA 590 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 248 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 307 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 308 IFIDEIDSIA 317 >gi|303232522|ref|ZP_07319208.1| DNA polymerase III, subunit gamma and tau [Atopobium vaginae PB189-T1-4] gi|302481309|gb|EFL44383.1| DNA polymerase III, subunit gamma and tau [Atopobium vaginae PB189-T1-4] Length = 679 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 10/106 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ + L + K + H LF GP G GKTT+A+++A+ L Sbjct: 9 RPRTFTEVVGQQHVVATLTHAVTHNK-----IAHAYLFCGPRGTGKTTMARLLAKALTCT 63 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEIL 125 + P A D + + DVL +D R + + EEIL Sbjct: 64 HTTNHLPC--GACDACLQIARAQHPDVLELDAASRTGVDNVREEIL 107 >gi|297836828|ref|XP_002886296.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332136|gb|EFH62555.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 718 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 43 FIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAAL 99 F E K LD L GPPG+GKT +AQ VA E G N+ GP +++K GD Sbjct: 472 FPEQCKGFEFCLDTGFLLFGPPGVGKTLVAQAVANEAGANYIHVEGPELLSKYVGDTEKA 531 Query: 100 LTNLEDRD------VLFIDEIHRLS 118 + L R ++F DE+ L+ Sbjct: 532 IRELFSRARRCSPCIVFFDEVDALT 556 >gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii] Length = 332 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ + E Q E + L +E A L H+LF GPPG GKT+ A +AR+L Sbjct: 11 RPKNVSEVAYQEEVVNTLTRALETAN-----LPHLLFYGPPGTGKTSTALAIARQL 61 >gi|302890333|ref|XP_003044051.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256724970|gb|EEU38338.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 485 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 LF GPPG GK++L+ +A E G++ P +A DL + + R V+ +++I Sbjct: 265 LFYGPPGTGKSSLSVAIAGEFGLDLYEVKIPSVATDADLEQMFQEIPPRCVVLLEDI 321 >gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas reinhardtii] gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas reinhardtii] gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii] Length = 332 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ + E Q E + L +E A L H+LF GPPG GKT+ A +AR+L Sbjct: 11 RPKNVSEVAYQEEVVNTLTRALETAN-----LPHLLFYGPPGTGKTSTALAIARQL 61 >gi|146342770|ref|YP_001207818.1| cell division protein FtsH-like protein [Bradyrhizobium sp. ORS278] gi|146195576|emb|CAL79603.1| Cell division protein ftsH homolog (ATP-dependent zinc-metallo protease) [Bradyrhizobium sp. ORS278] Length = 618 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 18/135 (13%) Query: 1 MMDREG---LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLK---VFIEAAKARAEAL 54 +MDR+G L+S S+ + T + G EA L+ F++ K+ Sbjct: 132 VMDRQGFGGLMSIGKSRAKVYVETDTKVTFADVAGVDEAKFELQEVVQFLKDPKSYGRLG 191 Query: 55 DHV----LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD- 107 HV L VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ Sbjct: 192 AHVPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRDLFEQAR 251 Query: 108 -----VLFIDEIHRL 117 ++FIDE+ L Sbjct: 252 KAAPCIIFIDELDAL 266 >gi|169767894|ref|XP_001818418.1| peroxisomal biogenesis factor 6 [Aspergillus oryzae RIB40] gi|83766273|dbj|BAE56416.1| unnamed protein product [Aspergillus oryzae] Length = 1476 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1053 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1096 >gi|326477010|gb|EGE01020.1| peroxisomal biogenesis factor 6 [Trichophyton equinum CBS 127.97] Length = 1420 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1080 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1123 >gi|326437583|gb|EGD83153.1| ATPase AFG2 protein [Salpingoeca sp. ATCC 50818] Length = 852 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 12/97 (12%) Query: 27 LEEFTGQVE-ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85 L+E VE A N ++F + A VL VGPPG GKT +A+ VARE G + Sbjct: 302 LQEVRDTVELALQNPQIFTQYGLAPPRG---VLLVGPPGTGKTLIARAVARECGADVTVI 358 Query: 86 SGP-VIAKAG-----DLAALLTNL--EDRDVLFIDEI 114 +GP +I++ L A+ R ++F+DEI Sbjct: 359 NGPEIISRTYGETERSLKAIFAKAAPSGRHLIFVDEI 395 >gi|269123535|ref|YP_003306112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptobacillus moniliformis DSM 12112] gi|268314861|gb|ACZ01235.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptobacillus moniliformis DSM 12112] Length = 410 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 30/146 (20%) Query: 3 DREGLLSRNVSQEDADISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEALD-- 55 DR+ L + D +LL+P+ ++E GQ +A L V + R LD Sbjct: 39 DRDIELGYETTSNFDDFNLLKPKQIKEKLDEYIIGQEQAKKVLSVAVYNHFKRLSILDKV 98 Query: 56 ---------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN---- 102 ++L +GP G GKT LAQ +A+ L V I +AG + + N Sbjct: 99 DNDIEMQKSNILLIGPTGSGKTLLAQTLAKILDVPLAIADATTITEAGYVGDDVENVLLK 158 Query: 103 ----------LEDRDVLFIDEIHRLS 118 L R +++IDEI +++ Sbjct: 159 LIKAADYDIQLAQRGIIYIDEIDKIA 184 >gi|255088619|ref|XP_002506232.1| predicted protein [Micromonas sp. RCC299] gi|226521503|gb|ACO67490.1| predicted protein [Micromonas sp. RCC299] Length = 329 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR + + Q E L+ +E A + H+LF GPPG GKTT A + R+L Sbjct: 13 RPRNINDVAHQEEVVRTLEKALETAN-----MPHMLFYGPPGTGKTTCALAICRQL 63 >gi|119492549|ref|XP_001263640.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Neosartorya fischeri NRRL 181] gi|119411800|gb|EAW21743.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Neosartorya fischeri NRRL 181] Length = 1442 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1050 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1093 >gi|323474695|gb|ADX85301.1| AAA ATPase central domain protein [Sulfolobus islandicus REY15A] gi|323477429|gb|ADX82667.1| AAA ATPase central domain protein [Sulfolobus islandicus HVE10/4] Length = 405 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEA---AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RPR+L++ Q A L+ +IE+ K A+A VL GPPG+GKTTLA+ +A + Sbjct: 9 RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKA---VLLHGPPGVGKTTLAEALAHDYN 65 Query: 80 V 80 + Sbjct: 66 L 66 >gi|298713722|emb|CBJ48913.1| flagellar associated protein [Ectocarpus siliculosus] Length = 932 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA + NF S GP Sbjct: 630 VLFYGPPGCGKTLLAKAVANQCNANFISVKGP 661 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 38/139 (27%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AG----DLAALLTNLEDR--DV 108 VL GPPG GKT LA+ V E G + + +GP I AG +L E+ + Sbjct: 358 VLLYGPPGCGKTLLARAVIAETGAHLVTVNGPDIMGKVAGESETNLRKAFEEAEENSPSI 417 Query: 109 LFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156 +FIDE+ ++ IV ++L LM G P+ S + Sbjct: 418 VFIDEVDSIAPKRDKAGGETEKRIVSQLLT---------LMDGIKPT--------SHVVV 460 Query: 157 IAATTRVGLLTNPLQDRFG 175 IAAT R ++ +P RFG Sbjct: 461 IAATNRPNVI-DPALRRFG 478 >gi|301121234|ref|XP_002908344.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4] gi|262103375|gb|EEY61427.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4] Length = 800 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G NF S GP Sbjct: 516 VLLYGPPGCGKTLLAKAIAHESGANFISIKGP 547 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108 VL GPPG GK+ LA +A E G F S P V +G+ L L D + Sbjct: 188 VLLHGPPGTGKSMLAHAIAGECGATFLKISAPEVVSGMSGESEQKLRELFDEAISRAPSI 247 Query: 109 LFIDEI 114 +FIDEI Sbjct: 248 IFIDEI 253 >gi|212224243|ref|YP_002307479.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1] gi|212009200|gb|ACJ16582.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1] Length = 838 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 16/116 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G +A ++ +E E + VL GPPG GKT LA+ VA E Sbjct: 210 TYEDIGGLSDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269 Query: 78 LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125 +F + +GP I G+ L + + E+ ++FIDEI ++ EE++ Sbjct: 270 ANAHFIAINGPEIMSKFYGESEERLREIFKDAEENAPSIIFIDEIDAIAPKREEVV 325 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 18/71 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106 VL GPPG GKT LA+ VA E NF GP + L+ + E R Sbjct: 584 VLLYGPPGTGKTLLAKAVATESEANFIGIRGPEV-----LSKWVGESEKRIREIFRKARQ 638 Query: 107 ---DVLFIDEI 114 V+FIDEI Sbjct: 639 AAPTVIFIDEI 649 >gi|183219658|ref|YP_001837654.1| cell division protease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909795|ref|YP_001961350.1| ATP-dependent Zn protease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774471|gb|ABZ92772.1| ATP-dependent Zn protease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778080|gb|ABZ96378.1| Cell division protease; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 650 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 215 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKNAPCI 274 Query: 109 LFIDEI 114 +FIDEI Sbjct: 275 IFIDEI 280 >gi|145221368|ref|YP_001132046.1| ATPase central domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145213854|gb|ABP43258.1| AAA ATPase, central domain protein [Mycobacterium gilvum PYR-GCK] Length = 574 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 14/78 (17%) Query: 4 REGLLSRNVSQEDADISLLRPR-TLEEF-----TGQVEACSNLKVFIEAAKARAEALDHV 57 RE LL+ S+ D I L R + +E + +V A +KV A+A H+ Sbjct: 280 RETLLAEAQSELDRQIGLTRVKEQIERYRAATQMAKVRAARGMKV--------AQASKHM 331 Query: 58 LFVGPPGLGKTTLAQVVA 75 +F GPPG GKTT+A+VVA Sbjct: 332 IFTGPPGTGKTTIARVVA 349 >gi|322694070|gb|EFY85910.1| mitochondrial AAA ATPase, putative [Metarhizium acridum CQMa 102] Length = 1013 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 10/75 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH----------VLFVGPPGLGKTTLAQVVA 75 T E+ E S LK+ A R +A + L GPPG GKT LA+ VA Sbjct: 698 TFEDVHAPKETISALKLLTSLALVRPDAFAYGVLAQDRIPGCLLYGPPGTGKTMLAKAVA 757 Query: 76 RELGVNFRSTSGPVI 90 +E G N SG I Sbjct: 758 KESGANMLEISGATI 772 >gi|304360727|ref|YP_003856858.1| putative DNA polymerase III [Clostridium phage phiCTP1] gi|302495586|gb|ADL40366.1| putative DNA polymerase III [Clostridium phage phiCTP1] Length = 364 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP T E+ GQ N+K +E A E LF+G G GKTTLA+++A + N Sbjct: 9 RPHTFEDVVGQ----ENVKKILENQVATKEFKQAYLFIGSAGTGKTTLARILANAINAN 63 >gi|294494935|ref|YP_003541428.1| ATPase AAA [Methanohalophilus mahii DSM 5219] gi|292665934|gb|ADE35783.1| AAA family ATPase, CDC48 subfamily [Methanohalophilus mahii DSM 5219] Length = 743 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LAQ VA E NF S GP I Sbjct: 501 ILLYGPPGTGKTLLAQAVANEANANFISVKGPQI 534 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108 V+ GPPG GKT +A+ VA E F + +GP I G+ L + D + Sbjct: 225 VILYGPPGTGKTLIARAVASESNAYFINIAGPEIMGKYYGESEERLRKIFDEAAENAPSI 284 Query: 109 LFIDEIHRLS 118 +F+DEI ++ Sbjct: 285 IFVDEIDSIA 294 >gi|281207192|gb|EFA81375.1| AAA ATPase domain-containing protein [Polysphondylium pallidum PN500] Length = 801 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 9/63 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116 +L GPPG KT +A+ +A E G+NF + GP LLT VLF DE+ Sbjct: 591 ILLYGPPGCSKTLMAKALATESGLNFIAVKGP---------ELLTRSNAPSVLFFDEMDG 641 Query: 117 LSI 119 L++ Sbjct: 642 LAV 644 >gi|159127824|gb|EDP52939.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative [Aspergillus fumigatus A1163] Length = 749 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 438 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 481 >gi|134083057|emb|CAL00425.1| unnamed protein product [Aspergillus niger] Length = 1489 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1077 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1120 >gi|32473777|ref|NP_866771.1| cell division protein FtsH [Rhodopirellula baltica SH 1] gi|81661369|sp|Q7URM7|FTSH2_RHOBA RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|32444313|emb|CAD74311.1| cell division protein FtsH [Rhodopirellula baltica SH 1] Length = 728 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 15/109 (13%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAR 76 P T E+ G EA ++ ++ K + ++L VL VGPPG GKT LA+ +A Sbjct: 247 PTTFEDVAGIEEAVDEVREVVDFLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAKAIAG 306 Query: 77 ELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRL 117 E GV F S SG V A + + T +R ++FIDE+ L Sbjct: 307 EAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDAL 355 >gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521] gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521] Length = 341 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 6/64 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP TL++ + S ++ FI+ + L H+LF GPPG GKT+ +AR++ G Sbjct: 29 RPATLDDLVSHKDITSTIQNFIDKNR-----LPHLLFYGPPGTGKTSTILAMARKIFGPQ 83 Query: 82 FRST 85 FR++ Sbjct: 84 FRNS 87 >gi|317036527|ref|XP_001397514.2| peroxisomal biogenesis factor 6 [Aspergillus niger CBS 513.88] Length = 1466 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1054 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1097 >gi|298707690|emb|CBJ26007.1| Pim1 homolog, ATP-dependent protease [Ectocarpus siliculosus] Length = 1075 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 37/179 (20%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83 FI K R +L FVGPPG+GKT++ +A+ L F R Sbjct: 529 FIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALDREFYRFSVGGLRDVAEIKGHRR 588 Query: 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLD 135 + G + K + L + V+ IDEI +L+ + E+L P+ LD Sbjct: 589 TYVGSMPGKL--IQCLKVTGTNNPVVLIDEIDKLARAHDGDPASALLEVLDPSQNSAFLD 646 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + V ++LS I + + PL+DR + IRL+ Y++ + I ++ Sbjct: 647 NYL-------DVPVDLSNCLFICTANVLDTIPGPLKDRMEV-IRLSGYDLPEKVAISEQ 697 >gi|242822751|ref|XP_002487951.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative [Talaromyces stipitatus ATCC 10500] gi|218712872|gb|EED12297.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative [Talaromyces stipitatus ATCC 10500] Length = 1455 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1054 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1097 >gi|115385012|ref|XP_001209053.1| peroxisomal biogenesis factor 6 [Aspergillus terreus NIH2624] gi|114196745|gb|EAU38445.1| peroxisomal biogenesis factor 6 [Aspergillus terreus NIH2624] Length = 1439 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1051 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1094 >gi|150390210|ref|YP_001320259.1| recombination factor protein RarA [Alkaliphilus metalliredigens QYMF] gi|149950072|gb|ABR48600.1| AAA ATPase, central domain protein [Alkaliphilus metalliredigens QYMF] Length = 422 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 33/257 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP LE+ GQ S ++ + +A + +++F GPPG+GKTT+A +++ Sbjct: 9 MRPIKLEDVVGQEHILSKNQILNKTLQAGH--ITNMIFYGPPGVGKTTVANIISNMTNKK 66 Query: 82 FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 + A D+ ++ L+ + +L++DEI + ++ L +E+ ++ L Sbjct: 67 LYKLNA-TNASIKDIQRIVAELDSFMTMNGVLLYLDEIQNFNKKQQQSLLEYIENGKITL 125 Query: 137 MVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + E P LSR T+ F + + N IE LK +++R Sbjct: 126 IASTTENPYHYIYNAILSRSTVF---------------EFKLLTKSNV--IEGLKQVIKR 168 Query: 195 --GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAAL 250 T + +EA IA S G R A L AE + + + T IA + Sbjct: 169 INDEGKTLVEYEEEALDYIATASNGDLRRAMNALELAMYAAESENKEQVFLTIHIAQEST 228 Query: 251 LR--LAIDKMGFDQLDL 265 + ++ DK G D+ Sbjct: 229 QKKVISYDKFGDQHYDI 245 >gi|308272185|emb|CBX28792.1| Cell division cycle protein 48 homolog AF_1297 [uncultured Desulfobacterium sp.] Length = 711 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR--- 106 +A VL GPPG GKT +A+ +A E NF S SGP I G+ A L + + Sbjct: 213 DAPKGVLLYGPPGCGKTLIARAIAHETEANFFSISGPEIIHKFYGESEAHLRKIFEEATR 272 Query: 107 ---DVLFIDEIHRLS 118 +LF+DEI ++ Sbjct: 273 KGPSILFLDEIDAIA 287 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L VGPPG GKT +A+ +A E VNF S GP + Sbjct: 491 ILLVGPPGCGKTMMAKAIATESHVNFISIKGPAL 524 >gi|294788440|ref|ZP_06753683.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Simonsiella muelleri ATCC 29453] gi|294483871|gb|EFG31555.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Simonsiella muelleri ATCC 29453] Length = 419 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 113 NILLIGPTGSGKTLLAQSLARKLNVPFAMADATTLTEAGYVGEDVEQIITKLLNKCDGDV 172 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 173 AKAQRGIVYIDEIDKIS 189 >gi|291278894|ref|YP_003495729.1| ATPase AAA family [Deferribacter desulfuricans SSM1] gi|290753596|dbj|BAI79973.1| ATPase, AAA family [Deferribacter desulfuricans SSM1] Length = 404 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 6/100 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 L P+T +E GQ S+ +F + ++ +GPPG GKTT+A+++ ++ + Sbjct: 7 LEPKTFDEIVGQEHLLSSNALFRNIV--LSCDFQSIILIGPPGCGKTTIAKLIGKQHSMI 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLS 118 F + + D+ ++ + ++FIDEIH + Sbjct: 65 FYRLHAANCS-SSDIRKIVEETKGYGKTSIIFIDEIHHFN 103 >gi|284048929|ref|YP_003399268.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM 20731] gi|283953150|gb|ADB47953.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM 20731] Length = 645 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA L+ +E KA A+ VL GPPG GKT LA+ VA E Sbjct: 152 TFKDVAGADEAKQELEEVVEFLKAPQKYNQLGAKIPKGVLLYGPPGTGKTLLAKAVAGEA 211 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G A+ + +L D+ ++FIDEI Sbjct: 212 GVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNAPCIVFIDEI 255 >gi|301104184|ref|XP_002901177.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4] gi|262101111|gb|EEY59163.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4] Length = 771 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G NF S GP Sbjct: 487 VLLYGPPGCGKTLLAKAIAHESGANFISIKGP 518 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108 VL GPPG GK+ LA +A E G F S P V +G+ L L D + Sbjct: 188 VLLHGPPGTGKSMLAHAIAGECGATFLKISAPEVVSGMSGESEQKLRELFDEAISRAPSI 247 Query: 109 LFIDEI 114 +FIDEI Sbjct: 248 IFIDEI 253 >gi|304316830|ref|YP_003851975.1| stage V sporulation protein K [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778332|gb|ADL68891.1| stage V sporulation protein K [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 296 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 105/248 (42%), Gaps = 68/248 (27%) Query: 56 HVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDLAA---------LLTNLED 105 H++F G PG GKTT+A+++ + L G+ S V + DL + N++ Sbjct: 78 HMVFKGNPGTGKTTVARILGKLLKGIGVLSKGHVVEVERADLVGEYIGHTAHRVQENVKK 137 Query: 106 R--DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 +LF+DE + L+ + + L AMED++ F Sbjct: 138 SLGGILFVDEAYSLARGGDKDFGKEAIDTLVKAMEDYK------------------DEFI 179 Query: 156 LIAATTR----VGLLTNP-LQDRFGIPIRLNF--YEIEDLKTIVQRGAKLTGLAVTDEAA 208 LI A R L TNP L+ RF PI+++F Y I++L I + K +TD A Sbjct: 180 LILAGYRDEMEYFLNTNPGLRSRF--PIQIDFPDYTIDELLQIAELMVKNRQYILTDSAK 237 Query: 209 CEI--------AMRSRGTPRIAGRLLRR-VRDFA-EVAHAKTITREIADAALLRLAIDKM 258 +I R G R+ ++ R +R A + + KTIT++ D M Sbjct: 238 RKIMKVLINDNTTREIGNARLVRNIIERAIRKHAVRIMNKKTITKD-----------DLM 286 Query: 259 GFDQLDLR 266 D +D+R Sbjct: 287 IIDSIDIR 294 >gi|14520329|ref|NP_125804.1| replication factor C large subunit [Pyrococcus abyssi GE5] gi|42559542|sp|Q9V2G3|RFCL_PYRAB RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit; AltName: Full=PabRFC large subunit gi|5457544|emb|CAB49035.1| rfcL activator 1, replication factor C, large subunit [Pyrococcus abyssi GE5] Length = 479 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTTLAQVVARE 77 + RPR L E Q +A S +K +IEA +L GPPG GKTT +ARE Sbjct: 7 VEKYRPRRLSEIINQEDAISKVKAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYALARE 66 Query: 78 LGVNF 82 NF Sbjct: 67 Y--NF 69 >gi|327401704|ref|YP_004342543.1| Microtubule-severing ATPase [Archaeoglobus veneficus SNP6] gi|327317212|gb|AEA47828.1| Microtubule-severing ATPase [Archaeoglobus veneficus SNP6] Length = 354 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 12/114 (10%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE----ALDHVLFVGPPGLGKTTLAQV 73 + +++ +L + GQ EA +KV +E K + A +VLF GPPG GKT A+ Sbjct: 98 ETEIVKDVSLSDVVGQEEAKRKVKVILEFLKNPEKFGKWAPRNVLFYGPPGTGKTMTAKA 157 Query: 74 VARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSI 119 +A E V F S + GD A + L +R ++F+DE +++ Sbjct: 158 LANEAKVPFLSVKSTKLIGEHVGDGARRIHELYERARQVAPCIVFLDEFDSIAL 211 >gi|322707738|gb|EFY99316.1| DNA replication ATPase [Metarhizium anisopliae ARSEF 23] Length = 551 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP TL++ GQ N L+ IE + + ++ G G GKTT+A+ +A +G Sbjct: 143 MRPTTLDDVCGQDLVGPNGVLRGLIETNR-----VPSMILWGASGTGKTTIARCIAHMVG 197 Query: 80 VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +++G K + A LT R ++F DEIHR + +++ +E Sbjct: 198 SRFIELNATSTGVSECKKLFQEAANELTLTGRRTIIFCDEIHRFNKAQQDVFLKPVEAGT 257 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160 + L+ E PS + LSR FTL + T Sbjct: 258 VTLIGATTENPSFKVANALLSRCRTFTLRSLT 289 >gi|239946415|gb|ACS36235.1| cell division cycle protein 48 [Guillardia theta] Length = 792 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + + D+ V Sbjct: 507 VLFYGPPGCGKTLLAKAIANECQSNFISIKGPELLTMWFGESEANVREVFDKARQSAPCV 566 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 567 LFFDELDSIA 576 Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AG----DLAALLTNLEDR--DV 108 +L GPPG GKT +A+ VA E G F +GP I AG +L E + Sbjct: 234 LLMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEDNLRKAFAEAEKNAPSI 293 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 294 IFIDEIDSIA 303 >gi|225557253|gb|EEH05539.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR] Length = 424 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP +LEE +G + S + FI+ + L H+L GPPG GKT+ +AR + GVN Sbjct: 77 RPNSLEEVSGHHDIISTINRFIDKNR-----LPHLLLYGPPGTGKTSTILALARRIYGVN 131 >gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes aegypti] gi|108874432|gb|EAT38657.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes aegypti] Length = 330 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL + E S + FI+ E L H+LF GPPG GKT+ AR+L Sbjct: 16 RPATLSDLISHEEIISTINKFIQE-----EQLPHLLFYGPPGTGKTSTILACARQL 66 >gi|330506537|ref|YP_004382965.1| AAA family ATPase [Methanosaeta concilii GP-6] gi|328927345|gb|AEB67147.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6] Length = 723 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 8/81 (9%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105 EA VL GPPG GKT LA+ +A E +F + SGP I L L E+ Sbjct: 210 EAPKGVLLYGPPGTGKTLLAKALASETNAHFETLSGPEIMSKYYGESEEKLRQLFKTAEE 269 Query: 106 R--DVLFIDEIHRLSIIVEEI 124 + ++ IDEI ++ EE+ Sbjct: 270 QAPSIILIDEIDSIAPKREEV 290 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E NF S GP Sbjct: 488 ILLYGPPGTGKTMLAKAVATESQANFISIKGP 519 >gi|315441748|ref|YP_004074627.1| ATPase AAA [Mycobacterium sp. Spyr1] gi|315260051|gb|ADT96792.1| AAA+ family ATPase [Mycobacterium sp. Spyr1] Length = 574 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 14/78 (17%) Query: 4 REGLLSRNVSQEDADISLLRPR-TLEEF-----TGQVEACSNLKVFIEAAKARAEALDHV 57 RE LL+ S+ D I L R + +E + +V A +KV A+A H+ Sbjct: 280 RETLLAEAQSELDRQIGLTRVKEQIERYRAATQMAKVRAARGMKV--------AQASKHM 331 Query: 58 LFVGPPGLGKTTLAQVVA 75 +F GPPG GKTT+A+VVA Sbjct: 332 IFTGPPGTGKTTIARVVA 349 >gi|296090489|emb|CBI40820.3| unnamed protein product [Vitis vinifera] Length = 201 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 9/67 (13%) Query: 57 VLFVGPPGLGKTTLAQVVAR-------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--D 107 +L GPPGLGKTTLA V A+ E+ V+ +S + AK D+ + + +ED + Sbjct: 31 LLLCGPPGLGKTTLAHVAAKHCGYHVVEINVSDDRSSSTIEAKILDVVQMNSVMEDSKPN 90 Query: 108 VLFIDEI 114 L IDEI Sbjct: 91 CLVIDEI 97 >gi|88602285|ref|YP_502463.1| replication factor C small subunit [Methanospirillum hungatei JF-1] gi|110287812|sp|Q2FQT9|RFCS_METHJ RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|88187747|gb|ABD40744.1| replication factor C small subunit [Methanospirillum hungatei JF-1] Length = 323 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 10/70 (14%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RPR LE+ GQ E L+ ++ A+ E + H+LF G G GKTT A +ARE Sbjct: 9 IEKYRPRVLEDIIGQQEIIERLRSYV----AKRE-MPHLLFTGNAGTGKTTAAVALAREF 63 Query: 79 -----GVNFR 83 +NFR Sbjct: 64 FGEDWQMNFR 73 >gi|255944783|ref|XP_002563159.1| peroxin-6 Pex6-Penicillium chrysogenum [Penicillium chrysogenum Wisconsin 54-1255] gi|51701844|sp|Q9HG03|PEX6_PENCH RecName: Full=Peroxisomal biogenesis factor 6; AltName: Full=Peroxin-6 gi|9963893|gb|AAG09749.1|AF233277_1 peroxin-6 [Penicillium chrysogenum] gi|211587894|emb|CAP85959.1| peroxin-6 Pex6-Penicillium chrysogenum [Penicillium chrysogenum Wisconsin 54-1255] Length = 1459 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1054 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1097 >gi|328951792|ref|YP_004369126.1| IstB domain protein ATP-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328452116|gb|AEB07945.1| IstB domain protein ATP-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 247 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 11/110 (10%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLA------QVVARE 77 +TLEEF + N K I A E +++LF+GPPG+GKT LA +A+ Sbjct: 68 KTLEEFDFSFQPQLNEKEIIRLASLDFLEKKENLLFLGPPGVGKTHLAIAFGVKACMAKY 127 Query: 78 LGVNFRS----TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 + R+ T V K G L +L NL D++ +DE+ L I E+ Sbjct: 128 RVLFIRTQDLLTDLSVAHKTGRLGQVLLNLSRLDLVILDELGYLPITPEQ 177 >gi|325108972|ref|YP_004270040.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis DSM 5305] gi|324969240|gb|ADY60018.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis DSM 5305] Length = 751 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 13/83 (15%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPG 64 +SQED T + G EA L+ +E + A+ +AL VL VGPPG Sbjct: 244 ISQEDVKT------TFNDVAGIEEAVGELREIVEFLRTPAKYQALGGRIPRGVLLVGPPG 297 Query: 65 LGKTTLAQVVARELGVNFRSTSG 87 GKT LA+ VA E GV F SG Sbjct: 298 TGKTLLAKAVAGEAGVPFYGLSG 320 >gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545] Length = 331 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR + + + Q E L+ +E A + H+LF GPPG GKTT A + R+L Sbjct: 14 RPRKIGDVSHQEEVVRTLQKALETAN-----MPHMLFYGPPGTGKTTCALAICRQL 64 >gi|225440141|ref|XP_002277745.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1132 Score = 43.5 bits (101), Expect = 0.045, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 17/114 (14%) Query: 24 PRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR E+ GQ E + L +E + +A VL GPPG KT +A+ V Sbjct: 838 PRVKWEDVGGQNEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLLFGPPGCSKTLMARAV 897 Query: 75 ARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSII 120 A E G+NF + GP + G+ + +L + ++F DEI L++I Sbjct: 898 ASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVI 951 Score = 37.7 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT+LAQ+ + GVN S +G I G+ L + D V Sbjct: 499 VLLHGPPGTGKTSLAQLCICDAGVNLFSVNGAEIVSQYYGESEQALHEIFDSASQAAPAV 558 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 559 VFIDELDAIA 568 >gi|198275273|ref|ZP_03207804.1| hypothetical protein BACPLE_01432 [Bacteroides plebeius DSM 17135] gi|198271856|gb|EDY96126.1| hypothetical protein BACPLE_01432 [Bacteroides plebeius DSM 17135] Length = 738 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 4/73 (5%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69 +++A + L R + GQ EA + ++ AKA + L +LFVGP G+GKT Sbjct: 437 EDNASLEALYERISGQIYGQDEAIRQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 496 Query: 70 LAQVVARELGVNF 82 +A+V+A ELG++ Sbjct: 497 VAKVLASELGISL 509 >gi|139436961|ref|ZP_01771121.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC 25986] gi|133776608|gb|EBA40428.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC 25986] Length = 635 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 17/105 (16%) Query: 26 TLEEFTGQVEACSNLKV---FIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77 T ++ GQ EA +LK F+E + R E + L VGPPG GKT LA+ VA E Sbjct: 185 TFKDVAGQEEAKESLKEVVDFLEKPQ-RYEEIGAKLPRGALLVGPPGTGKTLLAKAVAGE 243 Query: 78 LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 GV F S SG + A + L +++ ++FIDEI Sbjct: 244 AGVPFFSISGSEFVEMFVGRGAAKVRDLFKQAKEKAPCIVFIDEI 288 >gi|121705106|ref|XP_001270816.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aspergillus clavatus NRRL 1] gi|119398962|gb|EAW09390.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aspergillus clavatus NRRL 1] Length = 1449 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1056 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1099 >gi|46122437|ref|XP_385772.1| hypothetical protein FG05596.1 [Gibberella zeae PH-1] Length = 1139 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 775 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 818 >gi|159110203|ref|XP_001705363.1| Replication factor C, subunit 4 [Giardia lamblia ATCC 50803] gi|157433446|gb|EDO77689.1| Replication factor C, subunit 4 [Giardia lamblia ATCC 50803] Length = 322 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 19/123 (15%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78 RPRTL+ G E + L+ F AA+ L ++LF G PGLGKTT+A +A ++ Sbjct: 11 RPRTLDGLIGNPEILARLRYF--AAQGN---LPNILFAGGPGLGKTTIALCLANQMLGAH 65 Query: 79 -GVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSIIVEEILYPA 128 V F + D+ A + + V +F+DE ++ +++L Sbjct: 66 RSVAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQVLRRI 125 Query: 129 MED 131 M+D Sbjct: 126 MDD 128 >gi|328709119|ref|XP_001952026.2| PREDICTED: lon protease homolog, mitochondrial-like [Acyrthosiphon pisum] Length = 927 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 40/218 (18%) Query: 16 DADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72 D + L R T+ E+ G E + FI +K + +L F GPPG+GKT++A+ Sbjct: 451 DENFDLKRATTILDEDHYGMEEVKKRILEFIAVSKLKGSTHGKILCFHGPPGVGKTSIAK 510 Query: 73 VVARELGVN-FRSTSG--------------PVIAKAGDLAALLTNLEDRD-VLFIDEIHR 116 +AR L FR + G V A G + L + ++ IDE+ + Sbjct: 511 SIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKMIQCLKKTSTENPLVLIDEVDK 570 Query: 117 L--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 + S + E+L P LD + V ++LS+ I A + + Sbjct: 571 IGRGHQGDPSSALLEMLDPEQNANFLDHYL-------DVSVDLSKVLFICAANVINTIPE 623 Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQ-----RGAKLTGL 201 PL+DR + I ++ Y E+ I + +G K TGL Sbjct: 624 PLRDRMEL-IDVSGYVAEEKMAIAKQYLIPQGLKSTGL 660 >gi|326921757|ref|XP_003207122.1| PREDICTED: LOW QUALITY PROTEIN: peroxisome biogenesis factor 1-like [Meleagris gallopavo] Length = 1263 Score = 43.5 bits (101), Expect = 0.046, Method: Composition-based stats. Identities = 21/32 (65%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL G PG GKT LA VVARE G+NF S GP Sbjct: 858 VLLYGAPGTGKTLLAGVVARESGMNFISVKGP 889 >gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R] gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R] Length = 350 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP TL++ + S ++ FIE + L H+LF GPPG GKT+ VAR + Sbjct: 34 VEKYRPVTLDDVVSHKDITSTIEKFIEKNR-----LPHLLFYGPPGTGKTSTILAVARRI 88 Query: 79 -GVNFR 83 G ++R Sbjct: 89 YGKDYR 94 >gi|212546641|ref|XP_002153474.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative [Penicillium marneffei ATCC 18224] gi|210064994|gb|EEA19089.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative [Penicillium marneffei ATCC 18224] Length = 1452 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1048 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1091 >gi|193702269|ref|XP_001948634.1| PREDICTED: replication factor C subunit 4-like [Acyrthosiphon pisum] Length = 359 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPRT++E + Q E + LK +E + + H+LF GPPG GKT+ AR+L Sbjct: 42 RPRTVDEVSEQSEIVAVLKQCLE----QGADMPHLLFYGPPGTGKTSTIIAAARQL 93 >gi|146093994|ref|XP_001467108.1| replication factor C, subunit 2 [Leishmania infantum JPCM5] gi|134071472|emb|CAM70161.1| putative replication factor C, subunit 2 [Leishmania infantum JPCM5] Length = 354 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPRTL E Q EA L+ ++ + H LF GPPG GKTT VA EL Sbjct: 32 RPRTLAEVEAQDEAVGALRACLK----EGANMPHFLFHGPPGTGKTTSILAVAHEL 83 >gi|157872662|ref|XP_001684866.1| replication factor C, subunit 2 [Leishmania major strain Friedlin] gi|68127936|emb|CAJ06571.1| putative replication factor C, subunit 2 [Leishmania major strain Friedlin] Length = 354 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPRTL E Q EA L+ ++ + H LF GPPG GKTT VA EL Sbjct: 32 RPRTLAEVEAQDEAVGALRACLK----EGANMPHFLFHGPPGTGKTTSILAVAHEL 83 >gi|15899195|ref|NP_343800.1| TATA binding protein (TBP)-interacting protein (TIP49-like), putative [Sulfolobus solfataricus P2] gi|13815753|gb|AAK42590.1| TATA binding protein (TBP)-interacting protein (TIP49-like), putative [Sulfolobus solfataricus P2] Length = 476 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ EA V ++ K + +LFVGPPG GKT LA +ARELG Sbjct: 63 LVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELG 112 >gi|328951829|ref|YP_004369163.1| IstB domain protein ATP-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328452153|gb|AEB07982.1| IstB domain protein ATP-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 247 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 11/110 (10%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLA------QVVARE 77 +TLEEF + N K I A E +++LF+GPPG+GKT LA +A+ Sbjct: 68 KTLEEFDFSFQPQLNEKEIIRLASLDFLEKKENLLFLGPPGVGKTHLAIAFGVKACMAKY 127 Query: 78 LGVNFRS----TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123 + R+ T V K G L +L NL D++ +DE+ L I E+ Sbjct: 128 RVLFIRTQDLLTDLSVAHKTGRLGQVLLNLSRLDLVILDELGYLPITPEQ 177 >gi|315650623|ref|ZP_07903683.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium saburreum DSM 3986] gi|315487120|gb|EFU77442.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium saburreum DSM 3986] Length = 427 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 28/135 (20%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIE------AAKARAEA---LDHVLFVGPP 63 DI+LL+P+ +++F GQ +A L V + +K AE ++L +GP Sbjct: 59 DINLLKPKEIKKFLDDYVIGQDDAKKVLSVAVYNHYKRIKSKRNAEVEIQKSNILMLGPT 118 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------L 109 G GKT LAQ +A+ L V F + +AG D+ +L L D DV + Sbjct: 119 GSGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAADGDVKRAEYGII 178 Query: 110 FIDEIHRLSIIVEEI 124 +IDEI +++ E + Sbjct: 179 YIDEIDKITKKSENV 193 >gi|315022325|gb|EFT35353.1| putative DNA polymerase III [Riemerella anatipestifer RA-YM] Length = 559 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 41/230 (17%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ + GQ S++ +E A A + +LF GP G+GKTT A+++AR++ Sbjct: 12 RPQEFDTVVGQ----SHITDTLEHAIAENQLAQALLFCGPRGVGKTTCARILARKINEKD 67 Query: 83 RSTSG--------PVIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVEEI 124 +TS + A + + + L D+ V IDE+H LS Sbjct: 68 GATSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHMLS------ 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 + F L E P A ++ I ATT + + R I Sbjct: 122 ----SQAFNAFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI-YDFKRIT 168 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 IED++ +++ A G++ D+A IA ++ G R A + R+ F + Sbjct: 169 IEDIQAHLRKIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFTQ 218 >gi|300122395|emb|CBK22966.2| unnamed protein product [Blastocystis hominis] Length = 844 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E LK ++ E + VLF GPPG GKT +A+ VA E Sbjct: 477 TWEDIGGLEEVKQELKEMVQYPVEYPEMFEKYGMDPTRGVLFYGPPGCGKTLMAKAVANE 536 Query: 78 LGVNFRSTSGP 88 NF S GP Sbjct: 537 CQSNFISIKGP 547 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT LA+ VA E G F +GP I AG+ + L E+ + + Sbjct: 243 VLLYGPPGSGKTLLARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSI 302 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ E+I Sbjct: 303 IFIDEIDSIAPKREKI 318 >gi|154498121|ref|ZP_02036499.1| hypothetical protein BACCAP_02102 [Bacteroides capillosus ATCC 29799] gi|150273111|gb|EDN00268.1| hypothetical protein BACCAP_02102 [Bacteroides capillosus ATCC 29799] Length = 421 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 106/267 (39%), Gaps = 54/267 (20%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L++ GQ L+ IE+ K + +++F GP G GKTT+A ++A+ Sbjct: 10 IRPESLDDVVGQRHILGEGGLLRRIIESGK-----IPNLVFYGPSGTGKTTVANIIAKRS 64 Query: 79 GVNFR---STSGP------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 G R +T+G VIA G + A + +L++DEI + ++ L + Sbjct: 65 GRALRRINATTGSLSDIKDVIADVGTMLA-----PNGILLYLDEIQYFNKKQQQSLLEVI 119 Query: 130 E--DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 E D L E P LSR T+ P+ ED Sbjct: 120 EKGDVTLVASTTENPYFYVYNAVLSRSTVFEFK----------------PV-----TAED 158 Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG---RLLRRVRDFAEVAHAK----T 240 + V RG + + ++A CE +R G + + V A K T Sbjct: 159 VLPAVNRGITIMEQRLGEQAVCEDGVREHIASACGGDVRKAMNAVELLLNSARRKDGVLT 218 Query: 241 ITREIADAALLRLAI--DKMGFDQLDL 265 +T E A A R A+ D+ G D D+ Sbjct: 219 VTLEDAKAVAQRSAMRYDREGDDHYDI 245 >gi|119872050|ref|YP_930057.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum islandicum DSM 4184] gi|119673458|gb|ABL87714.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum islandicum DSM 4184] Length = 738 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 17/118 (14%) Query: 24 PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR E G +E A ++ +E E H +L +GPPG GKT LA+ V Sbjct: 172 PRVTWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 231 Query: 75 ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 A E F + +GP I G+ A L + + ++FIDEI ++ EE+ Sbjct: 232 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 289 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG+GKT A+ VA E G NF + GP Sbjct: 502 ILLFGPPGVGKTLFAKAVATESGANFIAVRGP 533 >gi|118405046|ref|NP_001072787.1| spermatogenesis-associated protein 5-like protein 1 [Xenopus (Silurana) tropicalis] gi|123914803|sp|Q0VA52|SPA5L_XENTR RecName: Full=Spermatogenesis-associated protein 5-like protein 1 gi|111305502|gb|AAI21247.1| Spermatogenesis-associated protein 5-like protein 1 [Xenopus (Silurana) tropicalis] Length = 593 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 19/103 (18%) Query: 35 EACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 + C++LK I E + VL +GPPG+GKT L + VARE+G S Sbjct: 198 DTCASLKEIIHMPLHYPETMHKLGLPCPKGVLLIGPPGVGKTLLVKAVAREVGAYVIGLS 257 Query: 87 GPVI--AKAGDLAALLTNLEDR---------DVLFIDEIHRLS 118 GP I ++ G+ L + ++ +LFIDE+ L Sbjct: 258 GPAIHGSRPGESEENLRKIFEKAREAACSGPALLFIDEVDALC 300 >gi|88603693|ref|YP_503871.1| AAA family ATPase, CDC48 subfamily protein [Methanospirillum hungatei JF-1] gi|88189155|gb|ABD42152.1| AAA family ATPase, CDC48 subfamily [Methanospirillum hungatei JF-1] Length = 804 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTT 69 ++S LR R + G +A ++ +E R E D VL GPPG GKT Sbjct: 450 EVSHLRWR---DVGGLSDAIEEIRESVEYPLTRREKYDDLGIQSPRGVLLYGPPGTGKTL 506 Query: 70 LAQVVARELGVNFRSTSGP 88 LA+ VA E G NF + GP Sbjct: 507 LAKAVANESGANFIAVRGP 525 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E G +F +GP VI+K G+ L + + + Sbjct: 221 VLLFGPPGTGKTLIAKAVANESGAHFIPIAGPEVISKYYGESEQRLREVFEEAAENAPSI 280 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ EE+ Sbjct: 281 IFIDELDSITPKREEV 296 >gi|322493650|emb|CBZ28940.1| putative replication factor C, subunit 2 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 354 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPRTL E Q EA L+ ++ + H LF GPPG GKTT VA EL Sbjct: 32 RPRTLAEVEAQDEAVGALRACLK----EGANMPHFLFHGPPGTGKTTSILAVAHEL 83 >gi|321263001|ref|XP_003196219.1| cell division cycle protein 48 [Cryptococcus gattii WM276] gi|317462694|gb|ADV24432.1| Cell division cycle protein 48, putative [Cryptococcus gattii WM276] Length = 810 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 516 VLFYGPPGTGKTLLAKAIANECQANFISIKGP 547 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L + Sbjct: 243 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 302 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 303 IFIDELDSIA 312 >gi|300796999|ref|NP_001179000.1| peroxisome biogenesis factor 1 [Bos taurus] Length = 1281 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA V+A E G+NF S GP Sbjct: 876 VLLYGPPGTGKTLLAGVIAWESGMNFISVKGP 907 >gi|71005074|ref|XP_757203.1| hypothetical protein UM01056.1 [Ustilago maydis 521] gi|46096565|gb|EAK81798.1| hypothetical protein UM01056.1 [Ustilago maydis 521] Length = 822 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 513 VLFYGPPGTGKTLLAKAIANECQANFISIKGP 544 Score = 38.9 bits (89), Expect = 0.98, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 240 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 299 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 300 IFIDEIDSIA 309 >gi|322501204|emb|CBZ36283.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 354 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPRTL E Q EA L+ ++ + H LF GPPG GKTT VA EL Sbjct: 32 RPRTLAEVEAQDEAVGALRACLK----EGANMPHFLFHGPPGTGKTTSILAVAHEL 83 >gi|255658787|ref|ZP_05404196.1| ATP-dependent protease, Lon family [Mitsuokella multacida DSM 20544] gi|260849185|gb|EEX69192.1| ATP-dependent protease, Lon family [Mitsuokella multacida DSM 20544] Length = 651 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 + LLRPR E GQ A +L AK + H+L GPPG+GKTT A++V Sbjct: 181 MELLRPRDFSEIVGQERAVKSL-----LAKLSSPYPQHLLLYGPPGVGKTTAARLV 231 >gi|224070955|ref|XP_002303302.1| predicted protein [Populus trichocarpa] gi|222840734|gb|EEE78281.1| predicted protein [Populus trichocarpa] Length = 844 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108 +L GPPG+GKT LA+ VA E GVNF S S + A + AL ++ V Sbjct: 419 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEAKENAPSV 478 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 479 VFIDEL 484 >gi|167042803|gb|ABZ07521.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine microorganism HF4000_ANIW137I15] Length = 414 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 25/118 (21%) Query: 26 TLEEFT-GQVEACSNLKVFIEAAKARAEA----------LDHVLFVGPPGLGKTTLAQVV 74 TL+EF GQ A L V I R EA +VL +GP G GKT LAQ + Sbjct: 70 TLDEFVVGQELAKRVLSVAIHNHYKRIEANVDLNDVEIQKSNVLLIGPTGSGKTLLAQTM 129 Query: 75 ARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE------DRDVLFIDEIHRLS 118 AR L V F + +AG + LL N + +R +++IDEI ++S Sbjct: 130 ARILDVPFAIVDATTLTEAGYVGEDVENIILKLLQNADYDVQRAERGIIYIDEIDKIS 187 >gi|71000221|ref|XP_754814.1| peroxisome biosynthesis protein (PAS8/Peroxin-6) [Aspergillus fumigatus Af293] gi|66852451|gb|EAL92776.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative [Aspergillus fumigatus Af293] Length = 1442 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1050 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1093 >gi|58260308|ref|XP_567564.1| MMS2 [Cryptococcus neoformans var. neoformans JEC21] gi|134116242|ref|XP_773075.1| hypothetical protein CNBJ0700 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255696|gb|EAL18428.1| hypothetical protein CNBJ0700 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229614|gb|AAW46047.1| MMS2, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 810 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E NF S GP Sbjct: 516 VLFYGPPGTGKTLLAKAIANECQANFISIKGP 547 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L + Sbjct: 243 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 302 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 303 IFIDELDSIA 312 >gi|307110140|gb|EFN58376.1| hypothetical protein CHLNCDRAFT_59565 [Chlorella variabilis] Length = 340 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 6/62 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81 RP +++ G VEA S L++ E + +++ GPPG GKTT +A E LG N Sbjct: 29 RPTRIKDIVGNVEAVSRLQIIAEEGN-----MPNIILAGPPGTGKTTSILCLAHELLGPN 83 Query: 82 FR 83 FR Sbjct: 84 FR 85 >gi|317129825|ref|YP_004096107.1| ATP-dependent protease La [Bacillus cellulosilyticus DSM 2522] gi|315474773|gb|ADU31376.1| ATP-dependent protease La [Bacillus cellulosilyticus DSM 2522] Length = 772 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 40/188 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + GPPG+GKT+LA+ +AR LG NF R + G V +A G + + Sbjct: 350 LCLAGPPGVGKTSLARSIARSLGRNFVRISLGGVRDEAEIRGHRRTYVGAMPGRIIQGMK 409 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 E + V +DEI ++ S + E+L P + D + E +LS Sbjct: 410 KAETINPVFLLDEIDKMASDFRGDPSAAMLEVLDPEQNNSFSDHYIEE-------PYDLS 462 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203 + I +G + PL DR I + E+E L K + + G L V Sbjct: 463 KVMFIMTANNIGAIPAPLMDRMEIINIAGYTEVEKLNIAQEYLLPKQVKEHGLTKGKLQV 522 Query: 204 TDEAACEI 211 +EA ++ Sbjct: 523 KEEAILKV 530 >gi|145614662|ref|XP_361944.2| conserved hypothetical protein [Magnaporthe oryzae 70-15] gi|145021569|gb|EDK05698.1| conserved hypothetical protein [Magnaporthe oryzae 70-15] Length = 384 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+TL + T Q + L+ ++A+ L H+LF GPPG GKT+ +A+EL Sbjct: 37 VEKYRPKTLSDVTAQDHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTVLALAKEL 91 >gi|15894948|ref|NP_348297.1| recombination factor protein RarA [Clostridium acetobutylicum ATCC 824] gi|15024632|gb|AAK79637.1|AE007676_7 Predicted ATPase related to the helicase subunit of the Holliday junction resolvase [Clostridium acetobutylicum ATCC 824] gi|325509085|gb|ADZ20721.1| recombination factor protein RarA [Clostridium acetobutylicum EA 2018] Length = 421 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 8/142 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP E GQ K+ K+ + +++F GPPG GKTT+A ++A++ Sbjct: 8 IRPENFNEVFGQKHIIGEGKILDRILKS--SLVPNMIFYGPPGTGKTTVANIIAKKTNKA 65 Query: 82 FRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F + + ++ L R+ +L++DEI + ++ L ME+ + L+ Sbjct: 66 FYKLNATTASVKDVREITDSTNTLMGRNGVLLYLDEIQNFNKKQQQSLLEFMENGSITLI 125 Query: 138 VG--EGPSARSVKINLSRFTLI 157 E P LSR T+ Sbjct: 126 ASTTENPYFYVYNAILSRSTIF 147 >gi|328864072|gb|EGG13171.1| cell division cycle protein cdc48 [Melampsora larici-populina 98AG31] Length = 820 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 520 VLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 579 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 580 MFFDELDSIA 589 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 247 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 306 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 307 IFIDEIDSIA 316 >gi|298243635|ref|ZP_06967442.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM 44963] gi|297556689|gb|EFH90553.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM 44963] Length = 676 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 238 VLLVGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEVLVGVGASRVRDLFDQAKKASPSI 297 Query: 109 LFIDEI 114 +FIDEI Sbjct: 298 IFIDEI 303 >gi|221052961|ref|XP_002257855.1| replication factor C, subunit 2 [Plasmodium knowlesi strain H] gi|193807687|emb|CAQ38391.1| replication factor C, subunit 2, putative [Plasmodium knowlesi strain H] Length = 330 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 46/228 (20%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ L++ Q A S LK + R + + H++F GPPG GKT+ +A EL Sbjct: 11 RPKKLDDIVHQTNAVSMLKEVV-----RTKNMPHLIFHGPPGTGKTSAINALAHELFGRD 65 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDE----IHRLSIIVEEILYPAMEDF------ 132 + + A D DR + + E R+SI +I E Sbjct: 66 NISERVLELNASD---------DRGINVVREKIKAYTRISISKNKINSETNETLPPWKLV 116 Query: 133 ---QLDLMVGEGPSA--RSVKI--NLSRFTLIAATTRVGLLTNPLQDRF------GIPIR 179 + D+M + SA R ++I N++RF LI + +++P+ R GIPI Sbjct: 117 VLDEADMMTEDAQSALRRIIEIYSNVTRFILIC--NYIHKISDPIYSRCSCYRFQGIPID 174 Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 + + E L I K G+ + D+A +I ++G R A +L+ Sbjct: 175 V---KKEKLLYI----CKSEGINILDDALDKIIETTQGDLRRAVSILQ 215 >gi|134083012|emb|CAK42775.1| unnamed protein product [Aspergillus niger] Length = 342 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TLE+ +G + + + F+EA + L H+L GPPG GKT+ +AR + Sbjct: 51 RPNTLEDVSGHQDILATINKFVEANR-----LPHLLLYGPPGTGKTSTILALARRI 101 >gi|322778907|gb|EFZ09323.1| hypothetical protein SINV_15414 [Solenopsis invicta] Length = 1027 Score = 43.5 bits (101), Expect = 0.048, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 37/128 (28%) Query: 23 RPRTLEEFTGQV--EACS-NLKVFIE---------------AAKARAEALDHVLFVGPPG 64 RP+T+++ GQ ++C+ NL +++ A + ++ L GPPG Sbjct: 478 RPKTMKQIVGQQGDKSCAHNLYIWLRDWHKNRQDPKVKNGTAKQTHGQSFKAALLSGPPG 537 Query: 65 LGKTTLAQVVARELG-----VNFRSTSGPVIAKAGDLAALLTNLEDRD------------ 107 +GKTT QVV +ELG N T + K ++ LL+N +D Sbjct: 538 VGKTTTVQVVCKELGYDLLEFNASDTRNKTLLKEA-ISGLLSNTTMKDYVTGTKQKITSK 596 Query: 108 -VLFIDEI 114 VL +DE+ Sbjct: 597 HVLLMDEV 604 >gi|313673405|ref|YP_004051516.1| membrane protease ftsh catalytic subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312940161|gb|ADR19353.1| membrane protease FtsH catalytic subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 603 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 190 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKNAPCI 249 Query: 109 LFIDEI 114 +FIDEI Sbjct: 250 IFIDEI 255 >gi|307594201|ref|YP_003900518.1| AAA family ATPase [Vulcanisaeta distributa DSM 14429] gi|307549402|gb|ADN49467.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta distributa DSM 14429] Length = 737 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 17/118 (14%) Query: 24 PRTLEEFTGQV-EACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR E G + EA ++ +E E ++ VL +GPPG GKT LA+ V Sbjct: 180 PRVTWEDIGDLKEAKEKIRELVELPLKHPEIFEYLGIEPPKGVLLIGPPGTGKTLLAKAV 239 Query: 75 ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 A E F + +GP I G+ A L + + ++FIDEI ++ EE+ Sbjct: 240 ATETNAYFIAINGPEIVSKYYGESEAKLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 297 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E NF + GP I Sbjct: 498 ILLFGPPGTGKTLLAKAVATESNANFIAVRGPEI 531 >gi|301117462|ref|XP_002906459.1| replication factor C subunit 4 [Phytophthora infestans T30-4] gi|262107808|gb|EEY65860.1| replication factor C subunit 4 [Phytophthora infestans T30-4] Length = 339 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 6/62 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+ ++E + Q + LK I + L H+LF GPPG GKT+ V R+L G + Sbjct: 24 RPKNVDEISHQEHVVATLKTSIANGQ-----LPHLLFYGPPGTGKTSTIVAVGRQLFGPD 78 Query: 82 FR 83 FR Sbjct: 79 FR 80 >gi|225718574|gb|ACO15133.1| Replication factor C subunit 2 [Caligus clemensi] Length = 325 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 6/66 (9%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77 I RP+T ++ G E S LKVF E +++ GPPG+GKTT +AR Sbjct: 13 IEKYRPKTFDDIVGNSETVSRLKVFSEDGNP-----PNIIIAGPPGVGKTTTILCLARAL 67 Query: 78 LGVNFR 83 LG +F+ Sbjct: 68 LGGSFK 73 >gi|327400638|ref|YP_004341477.1| AAA family ATPase [Archaeoglobus veneficus SNP6] gi|327316146|gb|AEA46762.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus veneficus SNP6] Length = 734 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E+ +F S SGP I G+ L + + + Sbjct: 218 VLLYGPPGTGKTLIAKAVANEVNAHFISISGPEIMSKYYGESEQRLREIFEEAKENAPSI 277 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 278 IFIDEIDSIAPKREEV 293 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E NF S GP Sbjct: 493 ILLFGPPGTGKTLLAKAVANESNANFISVKGP 524 >gi|320353584|ref|YP_004194923.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] gi|320122086|gb|ADW17632.1| response regulator receiver protein [Desulfobulbus propionicus DSM 2032] Length = 715 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 59/255 (23%), Positives = 99/255 (38%), Gaps = 52/255 (20%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 L +P L+E V+ K+F++ K + F GPPG GKT++ + +A L Sbjct: 222 LGKPVNLDELRKTVKEVLEKKLFVQMGKGPI-----LCFTGPPGTGKTSVGKAIAEALQR 276 Query: 81 NFRSTSGPVIAKAGDL------------AALLTNLE----DRDVLFIDEIHRL------- 117 F S + +L ++T L+ + VL +DEI ++ Sbjct: 277 QFIRISLAGLRDEAELRGHRRTYVGALPGRVITELKRAGVNNPVLMLDEIDKIGQDFRGD 336 Query: 118 -SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176 + ++ E+L P D + + +LSR IA V L PL DR Sbjct: 337 PASVLLEVLDPEQNTHFTDHYL-------ELPFDLSRVMFIATANDVSTLPRPLLDRMEC 389 Query: 177 PIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 + E E L + I+ R KL GL + +A S R+ + D+ Sbjct: 390 IEFSGYTEKEKLHIAQQFILPRQLKLAGL-----SKFSVAFTSEALSRV-------INDY 437 Query: 233 AEVAHAKTITREIAD 247 + + + R+I+D Sbjct: 438 TRESGLRNLERQISD 452 >gi|296413660|ref|XP_002836527.1| hypothetical protein [Tuber melanosporum Mel28] gi|295630354|emb|CAZ80718.1| unnamed protein product [Tuber melanosporum] Length = 560 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 8/73 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 +L++ G+ E +L F+ E H VL GPPG GKT LA +ARE Sbjct: 37 SLQDIGGREEVVDDLLKFMTMPLTHPEVYLHTGVDLPHGVLLHGPPGCGKTMLANAIARE 96 Query: 78 LGVNFRSTSGPVI 90 +G+ F + S P I Sbjct: 97 VGLPFIAFSAPSI 109 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G NF + GP Sbjct: 354 VLLWGPPGCGKTLLAKAIANESGANFINIRGP 385 >gi|302902832|ref|XP_003048729.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256729663|gb|EEU43016.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 1138 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 776 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 819 >gi|164662603|ref|XP_001732423.1| hypothetical protein MGL_0198 [Malassezia globosa CBS 7966] gi|159106326|gb|EDP45209.1| hypothetical protein MGL_0198 [Malassezia globosa CBS 7966] Length = 778 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 469 VLFYGPPGTGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 528 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 529 MFFDELDSIA 538 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 196 VLMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 255 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 256 IFIDEIDSIA 265 >gi|118085819|ref|XP_418655.2| PREDICTED: similar to peroxisome biogenesis disorder protein 1 [Gallus gallus] Length = 1290 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL G PG GKT LA VVARE G+NF S GP Sbjct: 885 VLLYGAPGTGKTLLAGVVARESGMNFISVKGP 916 >gi|299140335|ref|ZP_07033498.1| ATP-dependent protease La [Acidobacterium sp. MP5ACTX8] gi|298597669|gb|EFI53844.1| ATP-dependent protease La [Acidobacterium sp. MP5ACTX8] Length = 809 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 58/235 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + F GPPG+GKT+L +A+ G F R + G V +A G + + Sbjct: 354 LCFAGPPGVGKTSLGMSIAKATGRKFVRMSLGGVRDEAEIRGHRRTYIGALPGQIIQSMK 413 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ V+ +DEI ++ + + E+L P +D LD V+ Sbjct: 414 KAGTKNPVIMLDEIDKMASDFRGDPASALLEVLDPEQNNTFQDHYLD-----------VE 462 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGL-- 201 +LS+ +A + + PLQDR I +RL Y E+E L + +V++ + TGL Sbjct: 463 YDLSQVLFVATANVLHTIPGPLQDRMEI-LRLTGYTEVEKLEIAKQYLVKKQLEATGLNA 521 Query: 202 ---AVTDEAACEIAMRS------RGTPRIAGRLLRRV-RDFAE-VAHAKTITREI 245 + TD+A EI R R G L R+V R E AH +T E+ Sbjct: 522 EQISFTDDALREIIRNYTREAGVRNLEREIGNLCRKVARKVVENSAHTIVVTPEV 576 >gi|46110661|ref|XP_382388.1| hypothetical protein FG02212.1 [Gibberella zeae PH-1] Length = 485 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 LF GPPG GK++L+ +A E G++ P +A DL + + R V+ +++I Sbjct: 266 LFYGPPGTGKSSLSVAIAGEFGLDLYEVKIPSVATDADLEQMFQEIPPRCVVLLEDI 322 >gi|325479719|gb|EGC82809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus prevotii ACS-065-V-Col13] Length = 402 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 29/131 (22%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD----------HVLFVG 61 DI L P+ +++F GQ +A L V + R + + ++L +G Sbjct: 54 GDIDLSTPKEIKDFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSDIELQKSNILMLG 113 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRD 107 P G GKT LAQ +AR+L V F + +AG + + N+ +R Sbjct: 114 PTGSGKTLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIEVAERG 173 Query: 108 VLFIDEIHRLS 118 ++++DEI +++ Sbjct: 174 IIYVDEIDKIT 184 >gi|224010519|ref|XP_002294217.1| nuclear vcp-like-like protein [Thalassiosira pseudonana CCMP1335] gi|220970234|gb|EED88572.1| nuclear vcp-like-like protein [Thalassiosira pseudonana CCMP1335] Length = 605 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G NF S GP Sbjct: 359 VLLYGPPGCGKTLLAKAIANESGANFISVKGP 390 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A EL V++ S P Sbjct: 37 VLLRGPPGCGKTHLAKAIAGELNVSYFQVSAP 68 >gi|145592432|ref|YP_001154434.1| TIP49-like protein [Pyrobaculum arsenaticum DSM 13514] gi|145284200|gb|ABP51782.1| TBP-interacting protein TIP49 [Pyrobaculum arsenaticum DSM 13514] Length = 450 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQ EA + ++ K A VL VGPPG GKT LA +ARELG Sbjct: 39 FVGQTEAREAAYIIVQMIKEGKFAGRGVLIVGPPGTGKTALALGIARELG 88 >gi|313896921|ref|ZP_07830468.1| ATP-dependent protease, Lon family [Selenomonas sp. oral taxon 137 str. F0430] gi|312974368|gb|EFR39836.1| ATP-dependent protease, Lon family [Selenomonas sp. oral taxon 137 str. F0430] Length = 847 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV---A 75 + LLRP+ +E GQ A +L AK + H+L GPPG+GKTT A++V A Sbjct: 171 MELLRPQNFDEIIGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTTAARLVLEAA 225 Query: 76 RELGVNFRSTSGPVIAKAG 94 ++ V+ S P + G Sbjct: 226 KKRAVSPFGESAPFVETDG 244 >gi|322421229|ref|YP_004200452.1| ATP-dependent protease La [Geobacter sp. M18] gi|320127616|gb|ADW15176.1| ATP-dependent protease La [Geobacter sp. M18] Length = 815 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 99/240 (41%), Gaps = 53/240 (22%) Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNLE-- 104 FVGPPG+GKT+L + +AR +G F R + G V +A G L ++ L+ Sbjct: 361 FVGPPGVGKTSLGKSIARAMGRKFVRISLGGVRDEAEIRGHRRTYVGALPGRIIQGLKQA 420 Query: 105 --DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 + V +DE+ +L S + E+L P + D + ++ NLS Sbjct: 421 GSNNPVFMLDELDKLGSDFRGDPSSALLEVLDPEQNNSFSDHYI-------NLPFNLSNV 473 Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEAACE 210 IA ++ + PL+DR + + E E L + +V R K G++ E Sbjct: 474 MFIATANQMDTIPGPLRDRMEVITLAGYTEEEKLGIAKRYLVPRQVKENGISEDIAVFSE 533 Query: 211 IAMRS-----------RGTPRIAGRLLRRV-RDFAE------VAHAKTITREIADAALLR 252 A+R+ R R G + R+V R AE V A T+ + + LR Sbjct: 534 EALRTIISKYTREAGLRNLEREIGSVCRKVARKVAEGRGEKFVITAGTVAKYLGPPKFLR 593 >gi|253582122|ref|ZP_04859346.1| DNA polymerase III gamma and tau [Fusobacterium varium ATCC 27725] gi|251836471|gb|EES65008.1| DNA polymerase III gamma and tau [Fusobacterium varium ATCC 27725] Length = 484 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 8/60 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81 RP+ EE GQ E LK A R H LF GP G+GKTT+A+++A+ GVN Sbjct: 10 RPKNFEEIAGQKEIVKTLK-----ASLRNGKTSHAYLFTGPRGVGKTTIARLIAK--GVN 62 >gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2] gi|50400879|sp|Q6M044|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2] Length = 315 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL E G E L ++E +++ H+LF G PG+GKTT A +A++L Sbjct: 10 RPETLSEVVGHHEIIKRLTNYVEK-----KSMPHLLFSGSPGVGKTTAALALAKDL 60 >gi|85117512|ref|XP_965276.1| peroxisomal biogenesis factor 6 [Neurospora crassa OR74A] gi|51701798|sp|Q7SGP2|PEX6_NEUCR RecName: Full=Peroxisomal biogenesis factor 6; AltName: Full=Peroxin-6 gi|28927082|gb|EAA36040.1| peroxisomal biogenesis factor 6 [Neurospora crassa OR74A] Length = 1381 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1015 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1058 >gi|326488723|dbj|BAJ97973.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 830 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ VA E NF S GP Sbjct: 518 VLFFGPPGCGKTLLAKAVASESTANFISVKGP 549 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP I AGD A L E+ + + Sbjct: 245 VLLHGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMAGDSEANLRRAFEEAEKNAPAI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|226939793|ref|YP_002794866.1| ClpX [Laribacter hongkongensis HLHK9] gi|226714719|gb|ACO73857.1| ClpX [Laribacter hongkongensis HLHK9] Length = 422 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 22/129 (17%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 RE L + QE A +L + ++ A S+ K +E +K+ ++L +GP Sbjct: 72 REALDQYVIGQEQAKKAL--SVAVYNHYKRLNAKSDDKNEVELSKS------NILLIGPT 123 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVL 109 G GKT LAQ +AR L V F + +AG D+ +++T L R ++ Sbjct: 124 GSGKTLLAQTLARVLDVPFAIADATTLTEAGYVGEDVESIITKLLQKCDYDAQKAQRGII 183 Query: 110 FIDEIHRLS 118 +IDEI ++S Sbjct: 184 YIDEIDKIS 192 >gi|119719771|ref|YP_920266.1| TIP49-like [Thermofilum pendens Hrk 5] gi|119524891|gb|ABL78263.1| TBP-interacting protein TIP49 [Thermofilum pendens Hrk 5] Length = 441 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--VNFRSTSG 87 GQ+EA + ++ KA A +L VGPPG GKT +A +ARELG F + SG Sbjct: 31 LVGQIEARRAAWLVVQLIKAGKMAGRAILLVGPPGTGKTAIAVAIARELGPETPFMALSG 90 Query: 88 PVIAKA 93 I A Sbjct: 91 SEIYSA 96 >gi|51893679|ref|YP_076370.1| cell division protein [Symbiobacterium thermophilum IAM 14863] gi|81388257|sp|Q67LC0|FTSH1_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|51857368|dbj|BAD41526.1| cell division protein [Symbiobacterium thermophilum IAM 14863] Length = 594 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E GV F S SG + AG AA + L DR + Sbjct: 182 ILLSGPPGTGKTLLARALAGEAGVPFFSASGSDFVELFAGTGAARVRALFDRARKAAPCI 241 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 242 VFIDEIDAL 250 >gi|20093446|ref|NP_613293.1| replication factor C (ATPase involved in DNA replication) intein containing [Methanopyrus kandleri AV19] gi|42559498|sp|Q8TZC4|RFCS_METKA RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit; Contains: RecName: Full=Mkn RFC intein gi|19886265|gb|AAM01223.1| Replication factor C (ATPase involved in DNA replication) intein containing [Methanopyrus kandleri AV19] Length = 635 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 17/104 (16%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+ L++ Q LK ++ + ++LF GPPG GKTT A +AREL Sbjct: 14 VEKYRPKRLDDIVDQEHVVERLKAYVNRGD-----MPNLLFAGPPGTGKTTAALCLAREL 68 Query: 79 -GVNFR----------STSGPVIAKAGDLAALLTNLEDRDVLFI 111 G ++R S P++ + G L ED D + Sbjct: 69 FGEHWRDNFLELNASVSADTPILVRRGG-EVLRVTFEDLDSWYF 111 >gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces pombe 972h-] gi|13431787|sp|O14003|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication factor C3 gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe] gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe] gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe] gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces pombe] Length = 342 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP LE+ + S L+ FI + + + H+LF GPPG GKT+ AR++ G N Sbjct: 30 RPANLEDVVSHKDIISTLEKFISSNR-----VPHMLFYGPPGTGKTSTILACARKIYGPN 84 Query: 82 FRS 84 +R+ Sbjct: 85 YRN 87 >gi|148253363|ref|YP_001237948.1| cell division protein FtsH [Bradyrhizobium sp. BTAi1] gi|146405536|gb|ABQ34042.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1] Length = 618 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 18/135 (13%) Query: 1 MMDREG---LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLK---VFIEAAKARAEAL 54 +MDR+G L+S S+ + T + G EA L+ F++ K+ Sbjct: 132 VMDRQGFGGLMSIGKSRAKVYVETDTKVTFADVAGVDEAKFELQEVVQFLKDPKSYGRLG 191 Query: 55 DHV----LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD- 107 HV L VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ Sbjct: 192 AHVPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRDLFEQAR 251 Query: 108 -----VLFIDEIHRL 117 ++FIDE+ L Sbjct: 252 KAAPCIIFIDELDAL 266 >gi|326492255|dbj|BAK01911.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 1084 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+RE G+NF S GP Sbjct: 771 LLLFGPPGCGKTLLAGAVSRETGMNFISVKGP 802 >gi|300778485|ref|ZP_07088343.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum ATCC 35910] gi|300503995|gb|EFK35135.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum ATCC 35910] Length = 368 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 31/225 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ + GQ L+ IE ++ A+AL LF GP G+GKTT A+++AR++ Sbjct: 12 RPQEFDTVVGQSHITDTLEHAIEESQL-AQAL---LFCGPRGVGKTTCARILARKINEKD 67 Query: 83 RSTSGPVIA-KAGDLAALLTNLED------RDVLFIDEIHRLSI-IVEEILYPAMEDFQL 134 S S A +L A N D V F ++ + + I++E+ + F Sbjct: 68 GSVSEDGFAYNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSSAAFNA 127 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE-----IEDLK 189 L E P A ++ I +A T + ++ L R Y+ IED++ Sbjct: 128 FLKTLEEPPAHAIFI-------LATTEKHKIIPTILS-------RCQIYDFKRIVIEDIQ 173 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 ++ A+ + D+A IA ++ G R A + R+ F++ Sbjct: 174 NHLRNIAEKENIRYEDDALYLIAQKADGALRDALSIFDRLSTFSQ 218 >gi|212550899|ref|YP_002309216.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549137|dbj|BAG83805.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 410 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103 ++L VG G GKT LA+ +AR L V F V+ +AG D+ +LLT NL Sbjct: 112 NILLVGATGTGKTLLAKTIARLLKVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADFNL 171 Query: 104 E--DRDVLFIDEIHRLS 118 E ++ ++FIDEI +++ Sbjct: 172 EATEQGIVFIDEIDKIA 188 >gi|222478820|ref|YP_002565057.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239] gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239] Length = 327 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP++L++ GQ L+ +IE + + H+LF GP G GKTT A +AR++ Sbjct: 19 IEKYRPQSLDDIHGQEAIVERLQSYIEQ-----DDIPHLLFGGPAGTGKTTAATAIARQV 73 >gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis] gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis] Length = 335 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL+E + S ++ FI K L H+LF GPPG GKT+ A++L Sbjct: 22 RPQTLDELISHQDILSTIQRFISEDK-----LPHLLFYGPPGTGKTSTILACAKQL 72 >gi|45201490|ref|NP_987060.1| AGR394Wp [Ashbya gossypii ATCC 10895] gi|51701781|sp|Q74Z13|PEX6_ASHGO RecName: Full=Peroxisomal biogenesis factor 6; AltName: Full=Peroxin-6 gi|44986424|gb|AAS54884.1| AGR394Wp [Ashbya gossypii ATCC 10895] Length = 1021 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ VA +NF S GP Sbjct: 759 ILFYGPPGTGKTLLAKAVATNFSLNFFSVKGP 790 >gi|294784544|ref|ZP_06749833.1| DNA polymerase III, gamma and tau subunit [Fusobacterium sp. 3_1_27] gi|294487760|gb|EFG35119.1| DNA polymerase III, gamma and tau subunit [Fusobacterium sp. 3_1_27] Length = 484 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 31/246 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + E +G+ E +LK+ ++ K+ A A LF GP G+GKTT+A+++A+ L Sbjct: 10 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAKGLNCLN 65 Query: 83 RSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 +G + + A+ L ++ IDEI L E+I Y +E + Sbjct: 66 LKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLKKV 122 Query: 136 LMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--YE 184 ++ E N + I ATT + + + R R +F + Sbjct: 123 YIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ---RYDFKPLD 179 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E++K ++ K L++TD+ I S G+ R + +L R+ A+ K I + Sbjct: 180 LEEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERL---MVTANGKEIDLK 236 Query: 245 IADAAL 250 IA+ L Sbjct: 237 IAEDTL 242 >gi|256750670|ref|ZP_05491556.1| Sigma 54 interacting domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|307265753|ref|ZP_07547305.1| Sigma 54 interacting domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|256750510|gb|EEU63528.1| Sigma 54 interacting domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|306919267|gb|EFN49489.1| Sigma 54 interacting domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 476 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 35/134 (26%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKAGDLAA----LLTNL----- 103 H L VGP G+GKTT A+ + + ++G+ S V+ D A LL+ L Sbjct: 163 HTLIVGPTGVGKTTFAEAMYKYAVQIGI-LHEKSPFVVFNCADYAENPQLLLSQLFGYVK 221 Query: 104 ----------------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 D +LF+DE+HRL +E+L+ M+ M GE + R Sbjct: 222 GAFTGADKEKRGLVDEADGGILFLDEVHRLPPEGQEMLFTLMDKGMYRRM-GESENTRKA 280 Query: 148 KINLSRFTLIAATT 161 K+ +IAATT Sbjct: 281 KVR-----IIAATT 289 >gi|70606370|ref|YP_255240.1| TBP-interacting proten [Sulfolobus acidocaldarius DSM 639] gi|68567018|gb|AAY79947.1| TBP-interacting proten [Sulfolobus acidocaldarius DSM 639] Length = 452 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 29/50 (58%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQVEA + ++ + A +LFVGPPG GKT LA +A+ELG Sbjct: 39 LVGQVEAREASGIVVQLIRQGKMAGKGILFVGPPGTGKTALAVAIAKELG 88 >gi|68070283|ref|XP_677053.1| replication factor C, subunit 2 [Plasmodium berghei strain ANKA] gi|56497014|emb|CAH96737.1| replication factor C, subunit 2, putative [Plasmodium berghei] Length = 330 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 54/232 (23%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78 RP+ L++ Q A S LK I + + + H++F GPPG GKT+ +A EL Sbjct: 11 RPKKLDDIVHQTNAISMLKEVI-----KTKNMPHLIFHGPPGTGKTSAINALAHELFGKE 65 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE----IHRLSIIVEEILYPAMEDF-- 132 +N R L +DR + + E R+SI +I E Sbjct: 66 NINERVLE-------------LNASDDRGINVVREKIKAYTRISISKNKINTETNEQLPP 112 Query: 133 -------QLDLMVGEGPSA--RSVKI--NLSRFTLIAATTRVGLLTNPLQDRF------G 175 + D+M + SA R ++I N++RF LI + +++P+ R G Sbjct: 113 WKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILIC--NYIHKISDPIYSRCSCYRFQG 170 Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 IPI + + E L I K + ++D A +I ++G R A +L+ Sbjct: 171 IPINI---KKEKLLYI----CKNENIDISDNALSKIIETTQGDLRRAVSVLQ 215 >gi|308070422|ref|YP_003872027.1| ATP-dependent protease La-like protein [Paenibacillus polymyxa E681] gi|305859701|gb|ADM71489.1| ATP-dependent protease La-like protein [Paenibacillus polymyxa E681] Length = 575 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP TL++ GQ + LK + +A + HV+ GPPG+GKT A+VV E N Sbjct: 64 RPATLQDIVGQKDGLRALKAALCSANPQ-----HVIIYGPPGVGKTAAARVVLEEAKKNL 118 Query: 83 RS 84 S Sbjct: 119 SS 120 >gi|171186069|ref|YP_001794988.1| AAA family ATPase, CDC48 subfamily protein [Thermoproteus neutrophilus V24Sta] gi|170935281|gb|ACB40542.1| AAA family ATPase, CDC48 subfamily [Thermoproteus neutrophilus V24Sta] Length = 737 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 17/118 (14%) Query: 24 PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR E G +E A ++ +E E H +L +GPPG GKT LA+ V Sbjct: 171 PRVTWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 230 Query: 75 ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 A E F + +GP I G+ A L + + ++FIDEI ++ EE+ Sbjct: 231 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 288 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG+GKT A+ VA E G NF + GP Sbjct: 501 ILLFGPPGVGKTLFAKAVATESGANFIAVRGP 532 >gi|78356558|ref|YP_388007.1| FtsH peptidase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218963|gb|ABB38312.1| membrane protease FtsH catalytic subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 665 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE T V+ SN K F + VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 163 EELTEVVDFLSNPKKFTRLGGRIPKG---VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 219 >gi|218768389|ref|YP_002342901.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria meningitidis Z2491] gi|21263484|sp|Q9JTX8|CLPX_NEIMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|121052397|emb|CAM08729.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria meningitidis Z2491] Length = 414 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 17/88 (19%) Query: 48 KARAE---ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL 100 KARA + ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++ Sbjct: 103 KARANVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQII 162 Query: 101 TNL----------EDRDVLFIDEIHRLS 118 T L R +++IDEI ++S Sbjct: 163 TKLLGKCDFDVEKAQRGIVYIDEIDKIS 190 >gi|116519|sp|P05444|CLPA_RHOBL RecName: Full=ClpA homolog protein gi|45972|emb|CAA77308.1| URF 2 [Rhodobacter blasticus] Length = 793 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 23/161 (14%) Query: 10 RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPG 64 RNVS++DA+ RTL+ GQ +A L I+ A+A + + + LF GP G Sbjct: 469 RNVSKDDAETLRDLERTLKRLVFGQDKAIEALSASIKLARAGLREPEKPIGNYLFTGPTG 528 Query: 65 LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107 +GKT +A+ +A LGV R P D +LT+ D+ Sbjct: 529 VGKTEVAKQLAATLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPH 588 Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 VL +DEI + V IL M+ +L G R+V Sbjct: 589 CVLLLDEIEKAHPDVYNILLQVMDHGKLTDHNGRAVDFRNV 629 >gi|329766196|ref|ZP_08257754.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137255|gb|EGG41533.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 715 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101 K EA VL GPPG GKT LA+ VA E +F S SGP I L + Sbjct: 207 KIGVEAPKGVLLYGPPGTGKTLLAKAVAGETSAHFISLSGPEIMGKYYGESEEKLREIFK 266 Query: 102 NLEDR--DVLFIDEIHRLS 118 E+ ++FIDEI ++ Sbjct: 267 QAEENSPSIVFIDEIDSIA 285 >gi|294101893|ref|YP_003553751.1| ATP-dependent protease La [Aminobacterium colombiense DSM 12261] gi|293616873|gb|ADE57027.1| ATP-dependent protease La [Aminobacterium colombiense DSM 12261] Length = 779 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-ARAEALDHVL-FVGPPGLGKTTL 70 ++E+ DI+ + E+ G V+ + F+ + A EA VL FVGPPG+GKT+L Sbjct: 307 TEENLDITKAQRILDEDHYGLVKVKERILEFLAVRQLAGKEAKGQVLCFVGPPGVGKTSL 366 Query: 71 AQVVARELG---VNF 82 AQ +AR LG VNF Sbjct: 367 AQSIARALGRRFVNF 381 >gi|302411354|ref|XP_003003510.1| peroxisomal biogenesis factor 6 [Verticillium albo-atrum VaMs.102] gi|261357415|gb|EEY19843.1| peroxisomal biogenesis factor 6 [Verticillium albo-atrum VaMs.102] Length = 413 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 62 ILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 93 >gi|257469136|ref|ZP_05633230.1| DNA polymerase III subunits gamma and tau [Fusobacterium ulcerans ATCC 49185] gi|317063383|ref|ZP_07927868.1| DNA polymerase III gamma and tau [Fusobacterium ulcerans ATCC 49185] gi|313689059|gb|EFS25894.1| DNA polymerase III gamma and tau [Fusobacterium ulcerans ATCC 49185] Length = 484 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 8/60 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+ EE GQ E LK A R H LF GP G+GKTT+A+++A+ GVN Sbjct: 10 RPKNFEEIAGQKEIVKTLK-----ASLRNGKTSHAYLFTGPRGVGKTTIARLIAK--GVN 62 >gi|325982976|ref|YP_004295378.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212] gi|325532495|gb|ADZ27216.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212] Length = 613 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 8/92 (8%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 VE + LK ++ + A +L VGPPG GKT LA+ VA E GV F S SG + Sbjct: 169 VEIINFLKNPVDYGRLGGRAPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM 228 Query: 93 -AGDLAALLTNLEDR------DVLFIDEIHRL 117 G AA + +L ++ ++FIDE+ L Sbjct: 229 FVGVGAARVRDLFEQARQMAPAIIFIDELDAL 260 >gi|302830262|ref|XP_002946697.1| DNA replication factor C complex subunit 4 [Volvox carteri f. nagariensis] gi|300267741|gb|EFJ51923.1| DNA replication factor C complex subunit 4 [Volvox carteri f. nagariensis] Length = 328 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ + E Q E + L +E A L H+LF GPPG GKT+ A +AR+L Sbjct: 11 RPKNVNEVAYQEEVVNTLTRALETAN-----LPHLLFYGPPGTGKTSTALAIARQL 61 >gi|302813234|ref|XP_002988303.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii] gi|300144035|gb|EFJ10722.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii] Length = 829 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 13/102 (12%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAE-----ALDHVLFVGPPGLGKTTLAQVVARELGV 80 T ++F GQ + L+ ++ K E VL GPPG GKT LA+ +A E G+ Sbjct: 289 TFDDFAGQDYIKAELQEVVKLLKESKEDPTVYVPKGVLLHGPPGTGKTLLARAIAGEAGL 348 Query: 81 NFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFIDEI 114 F S G V AG AA + +L R ++FIDEI Sbjct: 349 PFFSVGGAEFVEMYAGVAAARVQDLFSRARNFAPSIIFIDEI 390 >gi|291001909|ref|XP_002683521.1| hypothetical protein NAEGRDRAFT_29126 [Naegleria gruberi] gi|284097150|gb|EFC50777.1| hypothetical protein NAEGRDRAFT_29126 [Naegleria gruberi] Length = 307 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 23/37 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 VL GPPG GKT LA+ VA E +NF S GP + A Sbjct: 60 VLLYGPPGCGKTLLAKAVATECQLNFMSVKGPELINA 96 >gi|239907451|ref|YP_002954192.1| ATP-dependent protease La [Desulfovibrio magneticus RS-1] gi|239797317|dbj|BAH76306.1| ATP-dependent protease La [Desulfovibrio magneticus RS-1] Length = 819 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 81/196 (41%), Gaps = 50/196 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+LA+ +AR +G F R + G V +A G + L Sbjct: 364 LCLVGPPGVGKTSLAKSIARAMGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 423 Query: 102 NLE-DRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ + V +DE+ ++S + E+L P A D LDL Sbjct: 424 RVKFNNPVFCLDEVDKMSTDFRGDPSSALLEVLDPEQNYAYSDHYLDL-----------D 472 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198 +LS+ I + + PLQDR I IR+ Y E E K I Q G Sbjct: 473 YDLSKIFFITTANSLHSIPLPLQDRMEI-IRIPGYLETEKAQIGGRFLLPKNIEQHGLTP 531 Query: 199 TGLAVTDEAACEIAMR 214 + +TDEA I R Sbjct: 532 ENIQLTDEAMLTIIRR 547 >gi|258516173|ref|YP_003192395.1| AAA family ATPase, CDC48 subfamily [Desulfotomaculum acetoxidans DSM 771] gi|257779878|gb|ACV63772.1| AAA family ATPase, CDC48 subfamily [Desulfotomaculum acetoxidans DSM 771] Length = 709 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E +F +GP +IAK G+ A L N+ +R + Sbjct: 217 VLLYGPPGTGKTLIARAVAEETDAHFIHVNGPEIIAKFYGESEAKLRNIFERAAQNAPSI 276 Query: 109 LFIDEI 114 +F+DE+ Sbjct: 277 IFLDEL 282 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 20/34 (58%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 ++ G PG GKT LA+ +A E NF S GP + Sbjct: 490 IILYGSPGTGKTLLAKAIATECNANFISIKGPAL 523 >gi|116327328|ref|YP_797048.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120072|gb|ABJ78115.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 652 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKNSPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|148656894|ref|YP_001277099.1| ATP-dependent protease La [Roseiflexus sp. RS-1] gi|148569004|gb|ABQ91149.1| ATP-dependent protease La [Roseiflexus sp. RS-1] Length = 802 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 84/217 (38%), Gaps = 47/217 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L +AR LG F R G V +A G + L R Sbjct: 359 LCFVGPPGVGKTSLGASIARALGRKFVRVALGGVRDEAEIRGHRRTYIGALPGRIIQGIN 418 Query: 107 ------DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V +DE+ +LS+ + E+L P +D + V +LS Sbjct: 419 RAGSNNPVFMLDEVDKLSVGFQGDPAAALLEVLDPEQNAAFVDRYL-------DVPFDLS 471 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEAA 208 R I R + L DR + + E+E L + ++QR GLA Sbjct: 472 RVLFICTANRSDTIPPALLDRMELLELAGYTEMEKLEICRRYLIQRQRSEQGLAERGPTI 531 Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E A+R R +R++ A + + R I Sbjct: 532 TEAALR------------RLIREYTHEAGVRDLERRI 556 >gi|83589006|ref|YP_429015.1| endopeptidase La [Moorella thermoacetica ATCC 39073] gi|83571920|gb|ABC18472.1| Endopeptidase La [Moorella thermoacetica ATCC 39073] Length = 655 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 91/229 (39%), Gaps = 54/229 (23%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV---AREL 78 LRPR LEE GQ +A ++ AK + H++ GPPG+GKTT A++ AR++ Sbjct: 173 LRPRRLEEIVGQEQAVQSI-----LAKLASPYPQHMIIYGPPGVGKTTAARLALEEARKI 227 Query: 79 GVNFRSTSGPVIAKAGD---------LAALLTNLED-------RD--------------- 107 + S P + G LL ++ D RD Sbjct: 228 SSSPFKASAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAENGVPEPKLGLVT 287 Query: 108 -----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSR-------- 153 VLFIDEI + ++ L +ED +++ P+ SV + + Sbjct: 288 EAHGGVLFIDEIGEMDPLLLNKLLKVLEDKRVEFDSSYYDPNDESVPQYIKKLFTEGAPA 347 Query: 154 -FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 F LI ATTR NP + D++TIV+ GA G+ Sbjct: 348 DFILIGATTREPEEINPALRSRCAEVFFEPLTPADVETIVREGAGRLGV 396 >gi|328859221|gb|EGG08331.1| hypothetical protein MELLADRAFT_47841 [Melampsora larici-populina 98AG31] Length = 346 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TLEE + ++ FI + + L H+LF GPPG GKT+ +AR+L Sbjct: 32 RPSTLEEVVSHKDIIYTIQKFITSNR-----LPHLLFYGPPGTGKTSTILAIARQL 82 >gi|317507640|ref|ZP_07965352.1| ATPase [Segniliparus rugosus ATCC BAA-974] gi|316254077|gb|EFV13435.1| ATPase [Segniliparus rugosus ATCC BAA-974] Length = 609 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 52/108 (48%), Gaps = 20/108 (18%) Query: 30 FTGQVEACSNLKVFIEAAKARAEA--------LDHVLFVGPPGLGKTTLAQVVAR---EL 78 TG + + L+ ++ A+ RAE H+ F GPPG GKTT+A+VVA+ L Sbjct: 327 MTGVKQQVARLQATVQMARLRAEKGLGGGQAKSQHLAFTGPPGTGKTTIARVVAKIYCGL 386 Query: 79 GV----NFRSTSGP--VIAKAGDLAALLTNLEDR---DVLFIDEIHRL 117 G+ N TS V G A T L DR VLFIDE + L Sbjct: 387 GLLKTANVLETSRKDFVGEHLGSTAIKTTALIDRAMDGVLFIDEAYTL 434 >gi|302760953|ref|XP_002963899.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii] gi|300169167|gb|EFJ35770.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii] Length = 765 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 13/102 (12%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAE-----ALDHVLFVGPPGLGKTTLAQVVARELGV 80 T ++F GQ + L+ ++ K E VL GPPG GKT LA+ +A E G+ Sbjct: 219 TFDDFAGQDYIKAELQEVVKLLKESKEDPTVYVPKGVLLHGPPGTGKTLLARAIAGEAGL 278 Query: 81 NFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFIDEI 114 F S G V AG AA + +L R ++FIDEI Sbjct: 279 PFFSVGGAEFVEMYAGVAAARVQDLFSRARNFAPSIIFIDEI 320 >gi|296126569|ref|YP_003633821.1| ATP-dependent protease La [Brachyspira murdochii DSM 12563] gi|296018385|gb|ADG71622.1| ATP-dependent protease La [Brachyspira murdochii DSM 12563] Length = 825 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 114/291 (39%), Gaps = 68/291 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98 + FVGPPG+GKT++ + +A L F R+ G + K + A Sbjct: 384 LCFVGPPGVGKTSIGKSIAEALNRPFFRFSLGGMRDEAEIKGHRRTYIGAMPGKI--IEA 441 Query: 99 LLTNLEDRDVLFIDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARS 146 L VL +DEI +L + E+L P + D LDL Sbjct: 442 LKIVKVKNPVLMLDEIDKLGTSFQGDPSSALLEVLDPEQNSSFRDHYLDL---------- 491 Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGL 201 +LS I + + PL DR + IRL+ Y +E+ K I+ R K GL Sbjct: 492 -PFDLSNVLFITTANTLDTIPRPLLDRMEV-IRLSGYIMEEKLKIASKYIIPRQVKANGL 549 Query: 202 AVTDEAACEIAMRS--RGTPRIAG------RLLRRVRDFAE--VAHAKTITREIAD---- 247 + + A+ S G R AG R+ R R A V++ KT I D Sbjct: 550 DIKNIKFTNKAISSIIEGYAREAGVRNFERRIERICRKIAADIVSNNKTSYDIIVDDKDL 609 Query: 248 AALLRLAIDKMGFDQLDLRYLTMIA---RNFGGGPVGIETISAGLSEPRDA 295 L+ I F + DL+ I + GG + IE+I +SE +DA Sbjct: 610 EKYLKKPIFTEDFTERDLKPGNAIGLAWTSMGGATLTIESIR--VSEKKDA 658 >gi|291165756|gb|EFE27804.1| DNA polymerase III subunit gamma/tau [Filifactor alocis ATCC 35896] Length = 533 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 47/245 (19%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELG 79 + RP+T ++ GQ S LK + + ++H LF GP G GKT+ A+V+AR Sbjct: 8 VYRPKTFDDIVGQEHITSVLK-----NQVAEDTVNHAYLFCGPRGTGKTSTAKVLAR--A 60 Query: 80 VNFRSTSGPVI-AKAGDLAAL------------LTNLED-RD-VLFIDEIHRLSI-IVEE 123 VN P K+ + ++L + N+ D RD ++F+ + R + I++E Sbjct: 61 VNCTGEIKPCYQCKSCEQSSLDIIEMDAASNNSVDNIRDIRDNIVFMPSVSRYKVYIIDE 120 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 + + F L E P S I ATT + + R R +F Sbjct: 121 VHMLSQGAFNALLKTLEEPP--------SHVIFILATTEPQKIPATVLSRCQ---RFDFK 169 Query: 184 EIEDL-------KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236 +I+D K ++Q G + AV C I +S G R A LL +V + +++ Sbjct: 170 KIDDSILTQQLEKVLLQEGKEFEADAV----QC-IVQKSDGGMRDALSLLDKVMNLSKLT 224 Query: 237 HAKTI 241 + I Sbjct: 225 KQEVI 229 >gi|289622387|emb|CBI51565.1| unnamed protein product [Sordaria macrospora] Length = 1359 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 997 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1040 >gi|281426190|ref|ZP_06257103.1| cell division protein FtsH [Prevotella oris F0302] gi|281399766|gb|EFB30597.1| cell division protein FtsH [Prevotella oris F0302] Length = 683 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E GV F S SG V A + + + +D+ ++ Sbjct: 240 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDVFSQAKDKSPCII 299 Query: 110 FIDEI 114 FIDEI Sbjct: 300 FIDEI 304 >gi|253581057|ref|ZP_04858318.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847720|gb|EES75689.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 600 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 31/60 (51%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE LK + K A VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 155 EEKEDLVEVVDFLKSPQKYTKVGARIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 214 >gi|171688524|ref|XP_001909202.1| hypothetical protein [Podospora anserina S mat+] gi|170944224|emb|CAP70334.1| unnamed protein product [Podospora anserina S mat+] Length = 1117 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 33/177 (18%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA---- 97 FI K R +L FVGPPG+GKT++ + +AR L + S +A ++ Sbjct: 588 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFSVGGLADVAEIKGHRR 647 Query: 98 ------------ALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137 AL + ++ IDEI ++ S + E+L P LD Sbjct: 648 TYVGALPGRVIQALKKCKTENPLILIDEIDKIGRGYQGDPSSALLELLDPEQNSSFLDHY 707 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + V ++LSR + + PL DR + IRL+ Y ++ I +R Sbjct: 708 L-------DVPVDLSRVLFVCTANMTDTIPRPLLDRMEV-IRLSGYVSDEKMAIAER 756 >gi|170578876|ref|XP_001894578.1| RuvB-like 1 [Brugia malayi] gi|158598745|gb|EDP36580.1| RuvB-like 1, putative [Brugia malayi] Length = 494 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQ+EA V ++ +++ A +LF GPPG GKT +A VA+ELG Sbjct: 43 FIGQLEAREAAGVIVDLIRSKRMAGRAILFAGPPGTGKTAIALAVAQELG 92 >gi|153011781|ref|YP_001372994.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC 49188] gi|151563669|gb|ABS17165.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC 49188] Length = 610 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 8/91 (8%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92 E LK E K A +L VGPPG GKT LA+ VA E GV F S SG + Sbjct: 170 EVVEFLKNPAEYGKLGAHIPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMF 229 Query: 93 AGDLAALLTNLEDR------DVLFIDEIHRL 117 G AA + +L ++ ++FIDE+ L Sbjct: 230 VGVGAARVRDLFEQARKSAPAIIFIDELDAL 260 >gi|18313875|ref|NP_560542.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum str. IM2] gi|18161441|gb|AAL64724.1| AAA family ATPase, possible cell division control protein cdc48 [Pyrobaculum aerophilum str. IM2] Length = 738 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 17/118 (14%) Query: 24 PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR E G +E A ++ +E E H +L +GPPG GKT LA+ V Sbjct: 172 PRVTWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 231 Query: 75 ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 A E F + +GP I G+ A L + + ++FIDEI ++ EE+ Sbjct: 232 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 289 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG+GKT A+ VA E G NF + GP Sbjct: 502 ILLFGPPGVGKTLFAKAVATESGANFIAVRGP 533 >gi|50308075|ref|XP_454038.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|51701755|sp|Q6CPV1|PEX6_KLULA RecName: Full=Peroxisomal biogenesis factor 6; AltName: Full=Peroxin-6 gi|49643173|emb|CAG99125.1| KLLA0E02003p [Kluyveromyces lactis] Length = 1000 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 738 ILFYGPPGTGKTLLAKAIASNFSLNFFSVKGP 769 >gi|332883563|gb|EGK03846.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dysgonomonas mossii DSM 22836] Length = 411 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +++ VGP G GKT LA+ +A+ L V F V+ +AG D+ ++LT L Sbjct: 110 NIIMVGPTGTGKTLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQASDYDV 169 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 170 AAAERGIVFIDEIDKIA 186 >gi|124003731|ref|ZP_01688579.1| conserved hypothetical protein [Microscilla marina ATCC 23134] gi|123990786|gb|EAY30253.1| conserved hypothetical protein [Microscilla marina ATCC 23134] Length = 1696 Score = 43.1 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL 109 R + + +L + PPG GKTTL + +A LGV F +GP I G L E + Sbjct: 1296 RTDLMGMLLLISPPGYGKTTLMEYIANRLGVIFMKINGPAI---GHQVTSLDPTEANNAS 1352 Query: 110 FIDEIHRLSIIVE 122 +E+++L++ E Sbjct: 1353 AREEVNKLNLAFE 1365 >gi|326571741|gb|EGE21754.1| recombination factor protein RarA [Moraxella catarrhalis BC8] Length = 412 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 9/138 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP TL+ GQ S R L ++ G G+GKTTLA ++A +G Sbjct: 8 MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65 Query: 82 FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 F S V + +L +L + + V+F+DEIHR + ++ L A+E ++ L+ Sbjct: 66 FHPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124 Query: 138 --VGEGPSARSVKINLSR 153 E PS LSR Sbjct: 125 GATTENPSFSVNNALLSR 142 >gi|325968458|ref|YP_004244650.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28] gi|323707661|gb|ADY01148.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta moutnovskia 768-28] Length = 737 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 17/118 (14%) Query: 24 PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR T E+ EA ++ +E E ++ VL +GPPG GKT LA+ V Sbjct: 180 PRITWEDIGDLKEAKEKIRELVELPLKHPEIFEYLGIEPPKGVLLIGPPGTGKTLLAKAV 239 Query: 75 ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 A E F + +GP I G+ A L + + ++FIDEI ++ EE+ Sbjct: 240 ATETNAYFIAINGPEIVSKYYGESEAKLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 297 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E NF + GP I Sbjct: 498 ILLFGPPGTGKTLLAKAVATESNANFIAVRGPEI 531 >gi|169343442|ref|ZP_02864442.1| ATP-dependent protease [Clostridium perfringens C str. JGS1495] gi|169298394|gb|EDS80483.1| ATP-dependent protease [Clostridium perfringens C str. JGS1495] Length = 632 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +SLLRP + +E GQ A +L +K + H++ GPPG+GKTT A+ +A E Sbjct: 163 MSLLRPDSFDEVVGQERAVKSL-----LSKLASPYPQHIILYGPPGVGKTTAAR-IALET 216 Query: 79 GVNFRST 85 +ST Sbjct: 217 AKKLKST 223 >gi|332375729|gb|AEE63005.1| unknown [Dendroctonus ponderosae] Length = 721 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 9/80 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F +GP V A + L ++R V Sbjct: 322 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCV 381 Query: 109 LFIDEIHRL-SIIVEEILYP 127 +FIDEI + S +L+P Sbjct: 382 VFIDEIDSIGSKRTNSVLHP 401 >gi|328542273|ref|YP_004302382.1| ATP-dependent metalloprotease FtsH [polymorphum gilvum SL003B-26A1] gi|326412022|gb|ADZ69085.1| ATP-dependent metalloprotease FtsH [Polymorphum gilvum SL003B-26A1] Length = 610 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 8/91 (8%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92 E LK E K A +L VGPPG GKT LA+ VA E GV F S SG + Sbjct: 170 EVVEFLKNPAEYGKLGAHIPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMF 229 Query: 93 AGDLAALLTNLEDR------DVLFIDEIHRL 117 G AA + +L ++ ++FIDE+ L Sbjct: 230 VGVGAARVRDLFEQARKSAPAIIFIDELDAL 260 >gi|317036017|ref|XP_001397471.2| replication factor C subunit 3 [Aspergillus niger CBS 513.88] Length = 396 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TLE+ +G + + + F+EA + L H+L GPPG GKT+ +AR + Sbjct: 51 RPNTLEDVSGHQDILATINKFVEANR-----LPHLLLYGPPGTGKTSTILALARRI 101 >gi|307265667|ref|ZP_07547220.1| Vesicle-fusing ATPase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919311|gb|EFN49532.1| Vesicle-fusing ATPase [Thermoanaerobacter wiegelii Rt8.B1] Length = 493 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 29/137 (21%) Query: 1 MMDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE-------AAKARA 51 +M+ +GL+ S+N+ + +++IS E+ GQ A S LK ++ +K Sbjct: 40 IMENKGLIPGSKNIIKPESEISF------EDIGGQNTAISELKEALDFVINREKISKMGI 93 Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------ 103 + +L GPPG GKT LA+ A+ +F +TSG + AG A + NL Sbjct: 94 RPIKGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEMYAGVGAQRVRNLFETAKN 153 Query: 104 ------EDRDVLFIDEI 114 ++ ++FIDEI Sbjct: 154 LARKEGKNSAIIFIDEI 170 >gi|292669341|ref|ZP_06602767.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648976|gb|EFF66948.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 700 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N+ + + LLRP+ +E GQ A +L AK + H+L GPPG+GKTT Sbjct: 163 NIHLTQSVMELLRPQNFDEIVGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTTA 217 Query: 71 AQVV 74 A++V Sbjct: 218 ARLV 221 >gi|284176150|ref|YP_003406427.1| Adenosinetriphosphatase [Haloterrigena turkmenica DSM 5511] gi|284017807|gb|ADB63754.1| Adenosinetriphosphatase [Haloterrigena turkmenica DSM 5511] Length = 739 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ NF + SGP I Sbjct: 254 VLLYGPPGTGKTLIARAVANEVDANFETVSGPEI 287 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ +A E VNF GP I Sbjct: 521 VLLHGPPGTGKTLLARALAGETDVNFVRVDGPEI 554 >gi|229815425|ref|ZP_04445757.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM 13280] gi|229808958|gb|EEP44728.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM 13280] Length = 635 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 17/105 (16%) Query: 26 TLEEFTGQVEACSNLKV---FIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77 T ++ GQ EA +LK F+E + R E + L VGPPG GKT LA+ VA E Sbjct: 183 TFKDVAGQEEAKESLKEVVDFLENPQ-RYEEIGAKLPRGALLVGPPGTGKTLLAKAVAGE 241 Query: 78 LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 GV F S SG + A + L +++ ++FIDEI Sbjct: 242 AGVPFFSISGSEFVEMFVGRGAAKVRDLFKQAKEKAPCIVFIDEI 286 >gi|24216518|ref|NP_713999.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str. 56601] gi|45656331|ref|YP_000417.1| cell division protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24197827|gb|AAN51017.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str. 56601] gi|45599565|gb|AAS69054.1| cell division protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 655 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKNSPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|18311617|ref|NP_563551.1| ATP-dependent proteinase La [Clostridium perfringens str. 13] gi|110800560|ref|YP_697325.1| ATP-dependent protease [Clostridium perfringens ATCC 13124] gi|110803724|ref|YP_699884.1| ATP-dependent protease [Clostridium perfringens SM101] gi|18146301|dbj|BAB82341.1| probable ATP-dependent proteinase La [Clostridium perfringens str. 13] gi|110675207|gb|ABG84194.1| ATP-dependent protease [Clostridium perfringens ATCC 13124] gi|110684225|gb|ABG87595.1| ATP-dependent protease [Clostridium perfringens SM101] Length = 619 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +SLLRP + +E GQ A +L +K + H++ GPPG+GKTT A+ +A E Sbjct: 150 MSLLRPDSFDEVVGQERAVKSL-----LSKLASPYPQHIILYGPPGVGKTTAAR-IALET 203 Query: 79 GVNFRST 85 +ST Sbjct: 204 AKKLKST 210 >gi|332978061|gb|EGK14799.1| ATP-dependent protease LonB [Desmospora sp. 8437] Length = 561 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 9/81 (11%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 R+VS + RP + +E GQ E LK + + H+L GPPG+GKT Sbjct: 51 RSVSLTEPLSEKTRPSSFDEIVGQKEGLRALKAALCGPNPQ-----HILIYGPPGVGKTA 105 Query: 70 LAQVVARELGVN----FRSTS 86 A+VV E N F STS Sbjct: 106 AARVVLEEAKKNPQSPFNSTS 126 >gi|300122194|emb|CBK22768.2| unnamed protein product [Blastocystis hominis] Length = 352 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 21/173 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116 VL GPPG KT LA+ VA E +NF S GP +L + ++ V + R Sbjct: 128 VLLYGPPGCSKTLLAKAVATEANMNFISVKGP------ELYSKYVGESEQAVAAVFRKAR 181 Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS---------RFTLIAATTRVGLLT 167 LS I + ++ F +D G + R V L+ R +IAAT R LL Sbjct: 182 LSSPC-VIFFDEIDAFAVDSRGSSGVTERVVSQFLTELDGIHALKRVLVIAATNRPDLLD 240 Query: 168 NPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRG 217 L R I L ++E + I++ L + D+ A EIA R+ G Sbjct: 241 PALLRPGRLDTHIFLGLPDVEARRKILE--VHLEKVPCDDDVDAQEIAERTEG 291 >gi|317154523|ref|YP_004122571.1| ATP-dependent protease La [Desulfovibrio aespoeensis Aspo-2] gi|316944774|gb|ADU63825.1| ATP-dependent protease La [Desulfovibrio aespoeensis Aspo-2] Length = 841 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 59/224 (26%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 + F GPPG+GKT+L + +AR LG F S + A G + + Sbjct: 420 LCFSGPPGVGKTSLGRSIARSLGRKFHRMSLGGMRDEAEIRGHRRTYIGAMPGRIIQAIK 479 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R+ V+ +DEI +L S + E+L P D + +V +LS Sbjct: 480 QCGTRNPVIMLDEIDKLGSDFRGDPSSALLEVLDPEQNFSFTDHYL-------NVPFDLS 532 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202 + I + + PL+DR I IR+ Y ++ I +R G K + LA Sbjct: 533 KVMFICTANMLDSIPGPLRDRMEI-IRIPGYTEQEKTAITRRYIIPRQIRENGLKESELA 591 Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 ++D+ ++ VR++ A + + REI Sbjct: 592 ISDKLVAKV-----------------VREYTREAGLRNVEREIG 618 >gi|297743224|emb|CBI36091.3| unnamed protein product [Vitis vinifera] Length = 904 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108 +L GPPG+GKT LA+ VA E GVNF S S + A + AL ++ V Sbjct: 474 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEAKENAPSV 533 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 534 VFIDEL 539 >gi|91775763|ref|YP_545519.1| ATP-dependent protease ATP-binding subunit [Methylobacillus flagellatus KT] gi|122985527|sp|Q1H1F9|CLPX_METFK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|91709750|gb|ABE49678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacillus flagellatus KT] Length = 421 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 24/111 (21%) Query: 32 GQVEACSNLKVFIEAAKARAE----------ALDHVLFVGPPGLGKTTLAQVVARELGVN 81 GQ +A NL V + R E A ++L +GP G GKT LAQ +AR L V Sbjct: 79 GQTQAKKNLAVAVYNHYKRLEQGGQKDDVEIAKSNILVIGPTGSGKTLLAQTLARLLDVP 138 Query: 82 FRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118 F + +AG + + N+ R +++IDEI ++S Sbjct: 139 FVMADATTLTEAGYVGEDVENIMQKLLQKCDYDVEKAQRGIVYIDEIDKIS 189 >gi|41615258|ref|NP_963756.1| hypothetical protein NEQ475 [Nanoarchaeum equitans Kin4-M] gi|40068982|gb|AAR39317.1| NEQ475 [Nanoarchaeum equitans Kin4-M] Length = 826 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E G F S +GP I G+ A L + + + Sbjct: 228 VLLYGPPGTGKTLLAKAVANESGAYFISINGPEIVSKYVGESEAKLREIFEEAQKNAPAI 287 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 288 IFIDEIDAIA 297 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ A E G NF + GP I Sbjct: 522 VLLYGPPGTGKTLLAKAAASESGANFIAVKGPEI 555 >gi|326389230|ref|ZP_08210798.1| Vesicle-fusing ATPase [Thermoanaerobacter ethanolicus JW 200] gi|325994593|gb|EGD53017.1| Vesicle-fusing ATPase [Thermoanaerobacter ethanolicus JW 200] Length = 493 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 29/137 (21%) Query: 1 MMDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE-------AAKARA 51 +M+ +GL+ S+N+ + +++IS E+ GQ A S LK ++ +K Sbjct: 40 IMENKGLIPGSKNIIKPESEISF------EDIGGQNTAISELKEALDFVINREKISKMGI 93 Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------ 103 + +L GPPG GKT LA+ A+ +F +TSG + AG A + NL Sbjct: 94 RPIKGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEMYAGVGAQRVRNLFETAKN 153 Query: 104 ------EDRDVLFIDEI 114 ++ ++FIDEI Sbjct: 154 LARKEGKNSAIIFIDEI 170 >gi|299141873|ref|ZP_07035008.1| cell division protein FtsH [Prevotella oris C735] gi|298576724|gb|EFI48595.1| cell division protein FtsH [Prevotella oris C735] Length = 681 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E GV F S SG V A + + + +D+ ++ Sbjct: 240 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDVFSQAKDKSPCII 299 Query: 110 FIDEI 114 FIDEI Sbjct: 300 FIDEI 304 >gi|224541457|ref|ZP_03681996.1| hypothetical protein CATMIT_00626 [Catenibacterium mitsuokai DSM 15897] gi|224525615|gb|EEF94720.1| hypothetical protein CATMIT_00626 [Catenibacterium mitsuokai DSM 15897] Length = 652 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 45/95 (47%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE T V N K F E A+ VL VGPPG GKT LA+ VA E V F S SG Sbjct: 181 EELTELVAFLKNPKKFTEMG---AKIPRGVLLVGPPGTGKTLLARAVAGEANVPFYSISG 237 Query: 88 P------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 V AG + + ++ ++FIDEI Sbjct: 238 SEFVEMFVGVGAGRVRDMFKKAKENAPCIIFIDEI 272 >gi|168211579|ref|ZP_02637204.1| ATP-dependent protease [Clostridium perfringens B str. ATCC 3626] gi|168214821|ref|ZP_02640446.1| ATP-dependent protease [Clostridium perfringens CPE str. F4969] gi|168218029|ref|ZP_02643654.1| ATP-dependent protease [Clostridium perfringens NCTC 8239] gi|182626424|ref|ZP_02954177.1| ATP-dependent protease [Clostridium perfringens D str. JGS1721] gi|170710443|gb|EDT22625.1| ATP-dependent protease [Clostridium perfringens B str. ATCC 3626] gi|170713714|gb|EDT25896.1| ATP-dependent protease [Clostridium perfringens CPE str. F4969] gi|177908298|gb|EDT70851.1| ATP-dependent protease [Clostridium perfringens D str. JGS1721] gi|182379942|gb|EDT77421.1| ATP-dependent protease [Clostridium perfringens NCTC 8239] Length = 632 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +SLLRP + +E GQ A +L +K + H++ GPPG+GKTT A+ +A E Sbjct: 163 MSLLRPDSFDEVVGQERAVKSL-----LSKLASPYPQHIILYGPPGVGKTTAAR-IALET 216 Query: 79 GVNFRST 85 +ST Sbjct: 217 AKKLKST 223 >gi|116332057|ref|YP_801775.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280211|sp|Q04Q03|FTSH_LEPBJ RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|116125746|gb|ABJ77017.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 652 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKNSPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|78043822|ref|YP_358912.1| putative ATP-dependent protease La [Carboxydothermus hydrogenoformans Z-2901] gi|77995937|gb|ABB14836.1| putative ATP-dependent protease La [Carboxydothermus hydrogenoformans Z-2901] Length = 632 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +S LRPR+ E GQ A L AK + H+L GPPG+GKTT A++ E Sbjct: 156 MSFLRPRSFSEIVGQERAIRAL-----LAKLSSPFPQHILLYGPPGVGKTTAARLCLEE 209 >gi|148264882|ref|YP_001231588.1| AAA family ATPase, CDC48 subfamily protein [Geobacter uraniireducens Rf4] gi|146398382|gb|ABQ27015.1| AAA family ATPase, CDC48 subfamily [Geobacter uraniireducens Rf4] Length = 701 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 +L GPPG GKT +A+ VA E +F S SGP I G+ A L NL + + Sbjct: 212 LLLHGPPGTGKTLIARAVANETNASFYSVSGPEIIHKFYGESEAKLRNLFEEARKNAPSI 271 Query: 109 LFIDEIHRLSIIVEEI 124 +F+DEI ++ E++ Sbjct: 272 IFLDEIDAIAPKREQV 287 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 25/42 (59%) Query: 49 ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 A+ + +L GPPG GKT LA+ +A E VNF S GP + Sbjct: 477 AKVKPPKGILLYGPPGTGKTLLAKALATESKVNFISIKGPAL 518 >gi|299138849|ref|ZP_07032026.1| ATPase associated with various cellular activities AAA_3 [Acidobacterium sp. MP5ACTX8] gi|298599003|gb|EFI55164.1| ATPase associated with various cellular activities AAA_3 [Acidobacterium sp. MP5ACTX8] Length = 322 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 27/169 (15%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-PVIAKAGDLAALLTNLEDRD------- 107 H L G PG+ KT + +AR LG+ FR G P + A L + + + D Sbjct: 45 HALIEGVPGVAKTLAVKTLARFLGLEFRRVQGTPDMMPADILGTNVFSPKTGDFGFHKGP 104 Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR-FTLIAATTR 162 L DEI+R+ + L +ME+ Q+ +A + L FT+ A Sbjct: 105 VFTQFLLTDEINRMPPRTQAALLESMEERQV--------TADGERHQLDECFTVFATQNP 156 Query: 163 VGLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQR-GAKLTGLAVTD 205 V T PL DRF + I++ + E+ D +T+++R A TG ++D Sbjct: 157 VEFEGTYPLPEAQLDRFLLKIKVEYPELADERTVLERHHAAHTGTGLSD 205 >gi|295695316|ref|YP_003588554.1| ATP-dependent protease La [Bacillus tusciae DSM 2912] gi|295410918|gb|ADG05410.1| ATP-dependent protease La [Bacillus tusciae DSM 2912] Length = 781 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 87/223 (39%), Gaps = 57/223 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+LA+ VAR LG F R + G V +A G + + Sbjct: 349 LCFVGPPGVGKTSLARSVARALGRRFVRVSLGGVRDEAEIRGHRRTYVGALPGRIIQGMK 408 Query: 102 NLEDRDVLF-IDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + D +F +DEI ++S + E+L P D + V +LS Sbjct: 409 QAGEMDPVFLLDEIDKMSHDFRGDPASALLEVLDPEQNHTFSDHYI-------EVPYDLS 461 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203 R I + PL DR + + E+E L K + G L++ Sbjct: 462 RVLFITTANVAYTIPQPLLDRMEVIHLPGYTEVEKLRIAKGYLVPKQLEAHGLTRDQLSI 521 Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +DE LL+ +R + A + + REIA Sbjct: 522 SDET-----------------LLKIIRSYTREAGVRNLEREIA 547 >gi|238926662|ref|ZP_04658422.1| ATP-dependent protease [Selenomonas flueggei ATCC 43531] gi|238885608|gb|EEQ49246.1| ATP-dependent protease [Selenomonas flueggei ATCC 43531] Length = 713 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 + LLRP+ +E GQ A +L AK + H+L GPPG+GKTT A++V Sbjct: 170 MELLRPKKFDEIVGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTTAARLV 220 >gi|237741245|ref|ZP_04571726.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 4_1_13] gi|229430777|gb|EEO40989.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 4_1_13] Length = 484 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 31/246 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + E +G+ E +LK+ ++ K+ A A LF GP G+GKTT+A+++A+ L Sbjct: 10 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAKGLNCLN 65 Query: 83 RSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 +G + + A+ L ++ IDEI L E+I Y +E + Sbjct: 66 LKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLKKV 122 Query: 136 LMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--YE 184 ++ E N + I ATT + + + R R +F + Sbjct: 123 YIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ---RYDFKPLD 179 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 +E++K ++ K L++TD+ I S G+ R + +L R+ A+ K I + Sbjct: 180 LEEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERL---MVTANGKEIDLK 236 Query: 245 IADAAL 250 IA+ L Sbjct: 237 IAEDTL 242 >gi|124361201|gb|ABN09173.1| AAA ATPase, central region [Medicago truncatula] Length = 511 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108 VL GPPG KT +A+ VA E G+NF + GP + G+ + +L D+ + Sbjct: 282 VLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFDKARANAPAI 341 Query: 109 LFIDEIHRLSI 119 +F DEI L+I Sbjct: 342 IFFDEIDSLAI 352 >gi|115973629|ref|XP_001195031.1| PREDICTED: similar to replication factor C subunit RFC5 [Strongylocentrotus purpuratus] Length = 292 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP +L++ E + ++ FI + + L H+LF GPPG GKT+ VA++L Sbjct: 8 RPNSLDDLISHTEIINTIQKFI-----KQDRLPHLLFYGPPGTGKTSTILAVAKQL 58 >gi|20093359|ref|NP_619434.1| cell division control protein 48 [Methanosarcina acetivorans C2A] gi|19918724|gb|AAM07914.1| cell division control protein 48 [Methanosarcina acetivorans C2A] Length = 753 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E NF + SGP I G+ L + D + Sbjct: 213 VLLHGPPGTGKTMIAKAVASETDANFITISGPEIVSKYYGESEQKLREIFDEAEKDAPSI 272 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 273 IFIDEIDSIA 282 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 485 VLLFGPPGTGKTLLAKAVASESEANFISIKGP 516 >gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1] gi|42559488|sp|Q8PVY4|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1] Length = 338 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ I RP L + GQ E L ++ L H+LF GPPG+GKT A Sbjct: 11 KEEIWIEKYRPVRLNQVAGQEETIERLMSYVATKN-----LPHLLFSGPPGVGKTASAVS 65 Query: 74 VAREL 78 +ARE+ Sbjct: 66 IAREI 70 >gi|51701840|sp|Q9C1E9|PEX6_GLOLA RecName: Full=Peroxisomal biogenesis factor 6; AltName: Full=ClaPEX6; AltName: Full=Peroxin-6 gi|13249305|gb|AAK16738.1|AF343063_1 Pex6 protein [Colletotrichum lagenarium] Length = 1388 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1018 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1061 >gi|296412774|ref|XP_002836095.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629900|emb|CAZ80252.1| unnamed protein product [Tuber melanosporum] Length = 648 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----V 108 VLF GPPG GKT LA ++A E+G F + S P I +G+ L L E R+ + Sbjct: 129 VLFHGPPGCGKTMLANIIAEEVGRPFIAISAPSIVSGMSGESEKRLRELFEEAREKAPCL 188 Query: 109 LFIDEI 114 +FIDEI Sbjct: 189 MFIDEI 194 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 385 VLLWGPPGCGKTLLAKAVANESRANFISIQGP 416 >gi|302414422|ref|XP_003005043.1| replication factor C subunit 2 [Verticillium albo-atrum VaMs.102] gi|261356112|gb|EEY18540.1| replication factor C subunit 2 [Verticillium albo-atrum VaMs.102] Length = 126 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+TL + T Q + L+ ++A+ L H+LF GPPG GKT+ +A+EL Sbjct: 37 VEKYRPKTLSDVTAQDHTVTILQRTLQASN-----LPHMLFYGPPGTGKTSTVLALAKEL 91 >gi|255658241|ref|ZP_05403650.1| ATP-dependent protease La [Mitsuokella multacida DSM 20544] gi|260849551|gb|EEX69558.1| ATP-dependent protease La [Mitsuokella multacida DSM 20544] Length = 841 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 35/177 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+LA +AR G F R+ G V +A G + + Sbjct: 369 LCLVGPPGVGKTSLAASIARATGRKFIRAALGGVRDEAEIRGHRRTYLGAMPGRIIEGIR 428 Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 N+ R+ +F +DE+ +L S + E+L PA D + + +LS Sbjct: 429 NVGTRNPVFLLDEVDKLVTDYRGDPSAALLEVLDPAQNKTFSDNYI-------DIPFDLS 481 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTD 205 + I +G + PL+DR I ++ E E L + +V R GLA D Sbjct: 482 KVFWIVTANSLGPIPRPLRDRMEIIELSSYTEYEKLEIAKRYLVARQRGQNGLAGKD 538 >gi|56961888|ref|YP_173610.1| cell-division protein FtsH [Bacillus clausii KSM-K16] gi|56908122|dbj|BAD62649.1| cell-division protein FtsH [Bacillus clausii KSM-K16] Length = 662 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNSPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|320581534|gb|EFW95754.1| peroxisomal Lon protease [Pichia angusta DL-1] Length = 935 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 47/228 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------ALL 100 +L GPPG+GKT+LA+ +A LG F+ S + DL AL Sbjct: 448 LLLTGPPGVGKTSLARSIASTLGRKFQRISVGGLNDFADLKGHRRTYVGAIPGLIVQALR 507 Query: 101 TNLEDRDVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 + V+ +DE+ ++ + EIL P D +G I+L Sbjct: 508 RSQSMNPVILLDEVDKIGSNSRKGDPEAALLEILDPEQNTNFHDHYIG-------FPIDL 560 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRL---NFYEIEDL--KTIVQRGAKLTGL----- 201 S+ + + + L++PL+DR + I L N+ E ++ K I+ R + GL Sbjct: 561 SQILFVCTSNDLWQLSDPLRDRMEV-IELAGYNYMEKVEICKKYIIPRQLERAGLASDAV 619 Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 A+ DE ++A P I R L R+ A + K + ++ +A Sbjct: 620 AMDDETILKMATHYTSEPGI--RNLERL--IAAICRGKAVETQMGEAT 663 >gi|294507044|ref|YP_003571102.1| Cell division protein FtsH [Salinibacter ruber M8] gi|310943088|sp|D5H7Z5|FTSH1_SALRM RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|294343372|emb|CBH24150.1| Cell division protein FtsH [Salinibacter ruber M8] Length = 686 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L ++R + Sbjct: 253 VLLVGPPGTGKTLLAKAVAGEAGVPFASISGSDFMEMFVGVGASRVRDLFDQAKERAPCI 312 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 313 IFIDEV 318 >gi|291571747|dbj|BAI94019.1| cell division protein FtsH [Arthrospira platensis NIES-39] Length = 628 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L +D + Sbjct: 204 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNSPCL 263 Query: 109 LFIDEI 114 +FIDEI Sbjct: 264 IFIDEI 269 >gi|218185465|gb|EEC67892.1| hypothetical protein OsI_35562 [Oryza sativa Indica Group] Length = 990 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 17/119 (14%) Query: 18 DISLLRPRT-LEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKT 68 ++SL P+ E+ GQV L IE + +A +++ L +GPPG KT Sbjct: 710 EVSLELPKIRWEDVGGQVRIKEQLIEAIELPQKNPKAFENMGVSPPRGLLMIGPPGCSKT 769 Query: 69 TLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNL--EDRD----VLFIDEIHRLSI 119 +A+ VA E +NF + GP + GD + +L + RD +LF DEI L++ Sbjct: 770 LMARAVASEAKLNFLAVKGPELFSKWVGDSEKAVRSLFAKARDNAPAILFFDEIDGLAV 828 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT+LA A + GVN + +GP I Sbjct: 441 ILLSGPPGTGKTSLATSCAYDEGVNLFTINGPEI 474 >gi|113200663|ref|YP_717826.1| sliding clamp loader [Synechococcus phage syn9] gi|76574562|gb|ABA47127.1| sliding clamp loader [Synechococcus phage syn9] Length = 313 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 15/121 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T+E+ F+E + + ++L G G+GKTT+A+ + ELG ++ Sbjct: 11 RPQTVEDCILPANVKETFTSFVEQGE-----IPNLLLSGTAGVGKTTIAKALCNELGADY 65 Query: 83 RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +G V +A + A+ LT+ VL IDE + V+ +L ++E+F Sbjct: 66 YVINGSDEGRFLDTVRNQAKNFASTVSLTSTSKHKVLIIDEADNTTPDVQLLLRASIEEF 125 Query: 133 Q 133 Q Sbjct: 126 Q 126 >gi|19112584|ref|NP_595792.1| AAA family ATPase Rix7 (predicted) [Schizosaccharomyces pombe 972h-] gi|74582013|sp|O14325|YB7A_SCHPO RecName: Full=Uncharacterized AAA domain-containing protein C16E9.10c gi|2467272|emb|CAB16902.1| AAA family ATPase Rix7 (predicted) [Schizosaccharomyces pombe] Length = 779 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 21/34 (61%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA +A ELGV F S S P I Sbjct: 211 VLLHGPPGCGKTMLANALANELGVPFISISAPSI 244 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 529 VLLWGPPGCGKTLLAKAVANESKANFISIRGP 560 >gi|330836760|ref|YP_004411401.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta coccoides DSM 17374] gi|329748663|gb|AEC02019.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta coccoides DSM 17374] Length = 410 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 31/141 (21%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLED-- 105 ++L +GP G GKT LA+ +AR+L V F + +AG L L+ N D Sbjct: 110 NILMIGPTGTGKTLLARTLARKLKVPFAIADATTLTEAGYVGEDVENILLKLIQNANDNI 169 Query: 106 ----RDVLFIDEIHRL-------SII-------VEEILYPAMEDFQLDLMVGEG---PSA 144 R ++FIDEI ++ SI V++ L +E + ++ G P+ Sbjct: 170 AEAERGIIFIDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTEANVPPQGGRKHPNQ 229 Query: 145 RSVKINLSRFTLIAATTRVGL 165 +KIN S I VGL Sbjct: 230 EMIKINTSNILFICGGAFVGL 250 >gi|313123085|ref|YP_004033344.1| m41 family endopeptidase ftsh [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279648|gb|ADQ60367.1| M41 family endopeptidase FtsH [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 657 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L TN + + Sbjct: 178 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFTNAKKNAPSI 237 Query: 109 LFIDEI 114 +FIDEI Sbjct: 238 IFIDEI 243 >gi|300172666|ref|YP_003771831.1| DNA polymerase III subunit gamma/tau [Leuconostoc gasicomitatum LMG 18811] gi|299887044|emb|CBL91012.1| DNA polymerase III subunit gamma/tau [Leuconostoc gasicomitatum LMG 18811] Length = 585 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 29/119 (24%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELG 79 + RPRT ++ GQ L+ IE + H LF GP G GKT+ A++ ARE+ Sbjct: 9 VYRPRTFDDMVGQEVITQTLRNAIETHQT-----GHAYLFSGPRGTGKTSAAKIFAREIN 63 Query: 80 --------------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLS 118 V F + S ++ D+ +L+N++ + V IDE+H LS Sbjct: 64 GIDPTTDDSQIPDIVEFDAASN---SRVEDMRDILSNVDYAPIEAEFKVYIIDEVHMLS 119 >gi|296241870|ref|YP_003649357.1| replication factor C large subunit [Thermosphaera aggregans DSM 11486] gi|296094454|gb|ADG90405.1| replication factor C large subunit [Thermosphaera aggregans DSM 11486] Length = 430 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 42/216 (19%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80 RPRT+E+ Q +A + ++E + VL GP G GKT+L + VAR G Sbjct: 12 RPRTIEDVVNQEDAKNAFLNWLENW-GKPGQKKAVLLHGPAGCGKTSLVEAVARSKGYQL 70 Query: 81 ------NFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +FR S I +AA + L R ++ +DE+ ++ +E A+ + Sbjct: 71 FEMNASDFRRKSD--IESIAKIAAQTSGLTGKRKIILLDEVDGINARADEGGIEAIIEL- 127 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-------E 186 IN+S+ ++ NP +P+R N EI Sbjct: 128 ---------------INVSKNPIVMTA------NNPYSKNL-LPLRQNVLEIPMKRLSET 165 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 + T +++ + +DEA EIA RS G R A Sbjct: 166 HVVTALKKICGAEKIECSDEALREIAKRSEGDLRSA 201 >gi|73670349|ref|YP_306364.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro] gi|72397511|gb|AAZ71784.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro] Length = 764 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79 E+ G EA + ++ IE E D VL GPPG GKT LA+ VA E Sbjct: 216 EDLGGVKEAITKIREMIELPLKHPELFDRLGIDAPKGVLLYGPPGTGKTMLAKAVANETD 275 Query: 80 VNFRSTSGPVI 90 F S +GP I Sbjct: 276 AYFISVNGPEI 286 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 20/83 (24%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----- 106 EA VL GPPG GKT LA+ +A E NF + AK DL + ++ Sbjct: 521 EAPKGVLLYGPPGTGKTLLAKAIAHESEANF------ITAKGSDLLSKWYGESEKRIAEV 574 Query: 107 ---------DVLFIDEIHRLSII 120 ++F+DE+ L+ I Sbjct: 575 FSRARQVAPSIIFLDELDSLAPI 597 >gi|328471584|gb|EGF42463.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus MTCC 5462] Length = 64 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 24/38 (63%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59 LRPR L ++ GQ L V+I AAK R E+LDHVL Sbjct: 26 LRPRRLAQYIGQDRVKHQLTVYITAAKQREESLDHVLL 63 >gi|83816311|ref|YP_445161.1| cell division protein FtsH [Salinibacter ruber DSM 13855] gi|83757705|gb|ABC45818.1| cell division protein FtsH [Salinibacter ruber DSM 13855] Length = 686 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L ++R + Sbjct: 253 VLLVGPPGTGKTLLAKAVAGEAGVPFASISGSDFMEMFVGVGASRVRDLFDQAKERAPCI 312 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 313 IFIDEV 318 >gi|150019592|ref|YP_001311846.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] gi|149906057|gb|ABR36890.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] Length = 710 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ EA +LK I+ A A+ + VL VGPPG GKT +A+ VA E Sbjct: 169 TFDDVAGQEEAKESLKEVIDFLNAPAKYTEIGAKLPKGVLLVGPPGTGKTLIAKAVAGEA 228 Query: 79 GVNFRSTSG 87 V F S SG Sbjct: 229 RVPFFSLSG 237 >gi|325684696|gb|EGD26850.1| cell division protein FtsH [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 704 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L TN + + Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFTNAKKNAPSI 284 Query: 109 LFIDEI 114 +FIDEI Sbjct: 285 IFIDEI 290 >gi|307326787|ref|ZP_07605979.1| Shikimate kinase [Streptomyces violaceusniger Tu 4113] gi|306887550|gb|EFN18544.1| Shikimate kinase [Streptomyces violaceusniger Tu 4113] Length = 282 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 26/38 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 V+ VGP G+GKTT+ QV+A LG FR + ++A AG Sbjct: 117 VVLVGPMGVGKTTVGQVLAHRLGTTFRDSDTDIVATAG 154 >gi|300812101|ref|ZP_07092549.1| ATP-dependent metallopeptidase HflB [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496940|gb|EFK32014.1| ATP-dependent metallopeptidase HflB [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 737 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L TN + + Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFTNAKKNAPSI 284 Query: 109 LFIDEI 114 +FIDEI Sbjct: 285 IFIDEI 290 >gi|226324367|ref|ZP_03799885.1| hypothetical protein COPCOM_02148 [Coprococcus comes ATCC 27758] gi|225206815|gb|EEG89169.1| hypothetical protein COPCOM_02148 [Coprococcus comes ATCC 27758] Length = 416 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 28/129 (21%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63 DI+LL+P ++ F GQ EA L V + R A ++L VGP Sbjct: 59 DINLLKPEEIKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELQKSNILMVGPT 118 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109 G GKT LAQ +A+ L V F + +AG + + N+ + ++ Sbjct: 119 GCGKTFLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEHGII 178 Query: 110 FIDEIHRLS 118 +IDEI +++ Sbjct: 179 YIDEIDKIT 187 >gi|209522887|ref|ZP_03271445.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] gi|209496936|gb|EDZ97233.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] Length = 651 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L +D + Sbjct: 227 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNSPCL 286 Query: 109 LFIDEI 114 +FIDEI Sbjct: 287 IFIDEI 292 >gi|170289821|ref|YP_001736637.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170173901|gb|ACB06954.1| AAA family ATPase, CDC48 subfamily [Candidatus Korarchaeum cryptofilum OPF8] Length = 742 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 8/73 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ +E E H VL GPPG GKT LA+ VA E Sbjct: 191 TYEDIGGLREEIQRIREMVELPLRHPELFRHLGIDPPKGVLLYGPPGTGKTLLAKAVANE 250 Query: 78 LGVNFRSTSGPVI 90 +F S SGP I Sbjct: 251 SNAHFISISGPEI 263 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E NF S GP Sbjct: 503 VLLYGPPGCGKTLIAKAVANESEANFISVKGP 534 >gi|77549300|gb|ABA92097.1| ATPase, AAA family protein, expressed [Oryza sativa Japonica Group] gi|125576618|gb|EAZ17840.1| hypothetical protein OsJ_33389 [Oryza sativa Japonica Group] Length = 1001 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 17/119 (14%) Query: 18 DISLLRPRT-LEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKT 68 ++SL P+ E+ GQV L IE + +A +++ L +GPPG KT Sbjct: 721 EVSLELPKIRWEDVGGQVRIKEQLIEAIELPQKNPKAFENMGVSPPRGLLMIGPPGCSKT 780 Query: 69 TLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEIHRLSI 119 +A+ VA E +NF + GP + GD + +L + RD +LF DEI L++ Sbjct: 781 LMARAVASEAKLNFLAVKGPELFSKWVGDSEKAVRSLFAKARDNAPAILFFDEIDGLAV 839 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT+LA A + GVN + +GP I Sbjct: 441 ILLSGPPGTGKTSLATSCAYDEGVNLFTINGPEI 474 >gi|322694786|gb|EFY86607.1| Peroxisomal biogenesis factor 6 [Metarhizium acridum CQMa 102] Length = 1373 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1006 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1049 >gi|310793882|gb|EFQ29343.1| ATPase [Glomerella graminicola M1.001] Length = 1397 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1022 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1065 >gi|307564452|ref|ZP_07626993.1| ATP-dependent metallopeptidase HflB [Prevotella amnii CRIS 21A-A] gi|307346812|gb|EFN92108.1| ATP-dependent metallopeptidase HflB [Prevotella amnii CRIS 21A-A] Length = 692 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 64/261 (24%), Positives = 107/261 (40%), Gaps = 45/261 (17%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ A ++ +E K + D L +GPPG GKT LA+ VA E Sbjct: 179 TFKDVAGQEGAKQEVEEIVEFLKNPGKYTDLGGKIPAGALLIGPPGTGKTLLAKAVAGEA 238 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130 GV F S SG V A + + +++ ++FIDEI + + P+M Sbjct: 239 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKAPCIIFIDEIDAVGRARSK--NPSM- 295 Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177 G R +N S ++AAT RV +L L RF Sbjct: 296 ---------GGNDERENTLNALLTEMDGFGTNSGVIVMAATNRVDMLDKALLRAGRFDRQ 346 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 I ++ ++ + K I K+ + ++ ++ + SR TP +G + V + A + Sbjct: 347 IHVDLPDLPERKAIF----KVHMSKIKYDSTVDVDLLSRQTPGFSGADIANVCNEAALIA 402 Query: 238 AKTITREIADAALLRLAIDKM 258 A+ + + L AID++ Sbjct: 403 ARHSDKHVGKQHFLE-AIDRI 422 >gi|302345773|ref|YP_003814126.1| ATP-dependent metallopeptidase HflB [Prevotella melaninogenica ATCC 25845] gi|302149199|gb|ADK95461.1| ATP-dependent metallopeptidase HflB [Prevotella melaninogenica ATCC 25845] Length = 676 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 107/264 (40%), Gaps = 51/264 (19%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ A ++ +E K + D L VGPPG GKT LA+ VA E Sbjct: 190 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 249 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130 GV F S SG V A + + +++ ++FIDEI + + PAM Sbjct: 250 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKSPCIIFIDEIDAVGRARSK--NPAM- 306 Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177 G R +N S ++AAT RV +L L RF Sbjct: 307 ---------GGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQ 357 Query: 178 IRLNFYEIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 I ++ ++ + K I R KL E +I + +R TP +G + V + A Sbjct: 358 IHVDLPDLPERKEIFLVHMRNLKL-------EKNLDIDLLARQTPGFSGADIANVCNEAA 410 Query: 235 VAHAKTITREIADAALLRLAIDKM 258 + A+ + E+ L A+D++ Sbjct: 411 LIAARHDSTEVTKQDFLD-AVDRI 433 >gi|71027617|ref|XP_763452.1| replication factor C subunit 4 [Theileria parva strain Muguga] gi|68350405|gb|EAN31169.1| replication factor C subunit 4, putative [Theileria parva] Length = 324 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D I RP TL++ G E + L+ FI A+ + ++L GPPG GKTT +A Sbjct: 6 DIWIEKYRPTTLDDIIGNPEITTRLQ-FI----AKEGNMPNLLLCGPPGTGKTTSVLCLA 60 Query: 76 RE-LGVNFRS 84 RE LG +F+S Sbjct: 61 RELLGTHFKS 70 >gi|322709224|gb|EFZ00800.1| Peroxisomal biogenesis factor 6 [Metarhizium anisopliae ARSEF 23] Length = 1388 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1021 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1064 >gi|256833464|ref|YP_003162191.1| Microtubule-severing ATPase [Jonesia denitrificans DSM 20603] gi|256686995|gb|ACV09888.1| Microtubule-severing ATPase [Jonesia denitrificans DSM 20603] Length = 414 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 16/111 (14%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVA 75 P T + G E + K IE RA + + VLF G PG GKT LA+++A Sbjct: 157 PLTFDALGGYDEVKARAKELIETQLGRAGELKAIGAKPVKGVLFTGAPGTGKTHLARIIA 216 Query: 76 RELGVNFRSTSGPVIAK--AGD----LAALLTNLEDRD--VLFIDEIHRLS 118 G F SGP I GD L L + R+ ++F DEI ++ Sbjct: 217 DVSGAVFYQVSGPSIVSKWVGDSEETLRRLFEDAAKRECAIIFFDEIDSIA 267 >gi|309790421|ref|ZP_07684983.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6] gi|308227534|gb|EFO81200.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6] Length = 642 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78 T + GQ EA +L +E K + AL VL VGPPG GKT L++ VA E Sbjct: 166 TFADVAGQEEAKQDLTEIVEFLKFPDKFAALGARIPRGVLMVGPPGTGKTLLSRAVAGEA 225 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G A+ + +L D+ ++FIDEI Sbjct: 226 GVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIIFIDEI 269 >gi|241999600|ref|XP_002434443.1| conserved hypothetical protein [Ixodes scapularis] gi|215497773|gb|EEC07267.1| conserved hypothetical protein [Ixodes scapularis] Length = 737 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ +A E G+NF S GP Sbjct: 496 ILLHGPPGCGKTLLAKAIANESGINFISVKGP 527 >gi|74182120|dbj|BAE34094.1| unnamed protein product [Mus musculus] Length = 949 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%) Query: 14 QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70 Q D ++ L R + + E+ G + + FI ++ R +L F GPPG+GKT++ Sbjct: 462 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 521 Query: 71 AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114 A+ +AR LG FR + G V A G + L + + L IDE+ Sbjct: 522 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 581 Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P LD + V ++LS+ I + + Sbjct: 582 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 634 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 635 PKPLRDRMEM-INVSGYVAQEKLAIAER 661 >gi|87309826|ref|ZP_01091960.1| cell division protein FtsH [Blastopirellula marina DSM 3645] gi|87287590|gb|EAQ79490.1| cell division protein FtsH [Blastopirellula marina DSM 3645] Length = 651 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL +GPPG GKT LA+ +A E GV F S SG V A + L +D + Sbjct: 211 VLLIGPPGTGKTLLARAIAGEAGVPFYSVSGSEFIQMFVGVGASRVRDLFKTAKDNAPSI 270 Query: 109 LFIDEI 114 +FIDEI Sbjct: 271 VFIDEI 276 >gi|296422059|ref|XP_002840580.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636799|emb|CAZ84771.1| unnamed protein product [Tuber melanosporum] Length = 1239 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 963 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSIKGP 1006 >gi|288801353|ref|ZP_06406807.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella sp. oral taxon 299 str. F0039] gi|288331736|gb|EFC70220.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella sp. oral taxon 299 str. F0039] Length = 743 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARE 77 L+ R L GQ EA + + AKA + L +LFVGP G+GKT +A+V+A E Sbjct: 438 LKERILSMVYGQDEAVEKVVEAVHTAKAGLIDDDKPLASLLFVGPTGVGKTEVARVLAHE 497 Query: 78 LGV 80 +GV Sbjct: 498 MGV 500 >gi|271968344|ref|YP_003342540.1| ATPase [Streptosporangium roseum DSM 43021] gi|270511519|gb|ACZ89797.1| ATPase central domain-containing protein [Streptosporangium roseum DSM 43021] Length = 780 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 104/254 (40%), Gaps = 73/254 (28%) Query: 35 EACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL-GVNFRSTS 86 E ++ IEA++ R EA + H +FVGPPG GKT++A+ VA+ T Sbjct: 231 EQVRSIAASIEASRLRKEAGYSTEPPMRHFVFVGPPGTGKTSVARTVAKIFYAFGLLETP 290 Query: 87 GPVIAKAGDL-------AALLTN-LEDR---DVLFIDEIHRL------------SIIVEE 123 V A+ DL A+ TN L DR VLF+DE + L + V+ Sbjct: 291 YVVEAQRADLVGEFLGATAIKTNELVDRALGGVLFVDEAYSLINSGDGQPDRFGAEAVQT 350 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNF 182 +L A +D +++ G + ++ F L +NP L RF +R Sbjct: 351 LLKRAEDDRDRLIIILAG-----YEKEMTSF----------LSSNPGLSSRFAGRVRFPS 395 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG----RLLRRVRDFAEVAHA 238 Y E+L I E+ R RG R+AG LL R D H Sbjct: 396 YAPEELLQI-----------------TELLQRRRGD-RMAGDAGPALLARFEDV----HR 433 Query: 239 KTITREIADAALLR 252 +TI E+ +A +R Sbjct: 434 RTIVDELGNARFVR 447 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 24/125 (19%) Query: 13 SQEDADISLLRPRTLEEFTGQVEA-CSNLKVFIEAAKARAE-------ALDHVLFVGPPG 64 S E+A L R LE QV A + L+V A+ R E + H +F GPPG Sbjct: 500 SLEEALADLDRMAGLEPVKRQVHAITAQLRV----ARMRQERGLPTPAQMRHFVFAGPPG 555 Query: 65 LGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDL-------AALLTN-LEDR---DVLFID 112 GKTT+A+++ R + + V A+ DL A+ TN L DR VLF+D Sbjct: 556 TGKTTVARILGRIFAALGLLAQPDVVEAQRADLVGQHLGATAIKTNELVDRALGGVLFVD 615 Query: 113 EIHRL 117 E + L Sbjct: 616 EAYSL 620 >gi|237738484|ref|ZP_04568965.1| DNA polymerase III gamma and tau [Fusobacterium mortiferum ATCC 9817] gi|229420364|gb|EEO35411.1| DNA polymerase III gamma and tau [Fusobacterium mortiferum ATCC 9817] Length = 483 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP+ EE GQ E +K + K LF GP G+GKTTLA+++A+ GVN Sbjct: 10 RPKNFEEVAGQKEIVKTIKTSLRNGKTSH----AYLFTGPRGVGKTTLARLIAK--GVN 62 >gi|6573151|gb|AAF17568.1|AF202034_1 endoplasmic reticulum membrane fusion protein [Drosophila melanogaster] Length = 799 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT A+ +A E NF S GP + G+ A + ++ D+ V Sbjct: 511 VLFYGPPGCGKTLPAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKGPSAAPCV 570 Query: 109 LFIDEIHRLS 118 LF DE+ ++ Sbjct: 571 LFFDELDSIA 580 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108 +L GPPG GKT +A+ VA E G F +GP I AG+ + L E+ + + Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 298 IFIDEIDAIA 307 >gi|325119120|emb|CBZ54672.1| hypothetical protein NCLIV_050990 [Neospora caninum Liverpool] Length = 387 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RPR +EE Q E L+ +E + H+LF GPPG GKT+ A + REL Sbjct: 37 VEKYRPRRVEEMAHQEEPKKMLRRILETGN-----MPHLLFYGPPGTGKTSAALALVREL 91 >gi|218246744|ref|YP_002372115.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|218167222|gb|ACK65959.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] Length = 646 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 15/107 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA + L+ ++ K+ A+ VL +GPPG GKT LA+ +A E Sbjct: 168 TFEDVAGVDEAKTELQEIVDFLKSAEKYTRLGAKIPKGVLLIGPPGTGKTLLAKAIAGEA 227 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRL 117 GV F S SG + G A+ + +L D+ ++FIDE+ L Sbjct: 228 GVPFFSISGSEFIELFVGIGASRVRDLFDQAKTQAPCIVFIDELDAL 274 >gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407] Length = 395 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL + T Q + L+ ++A+ L H+LF GPPG GKT+ +A+EL Sbjct: 40 RPKTLSDVTAQDHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKEL 90 >gi|320161233|ref|YP_004174457.1| ATP-dependent protease La [Anaerolinea thermophila UNI-1] gi|319995086|dbj|BAJ63857.1| ATP-dependent protease La [Anaerolinea thermophila UNI-1] Length = 839 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 37/188 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L Q +AR LG F R + G V +A G + L Sbjct: 388 LCFVGPPGVGKTSLGQSIARALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGRIIQALR 447 Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAME-DFQLDLMVGEGPSARSVKINL 151 +E R+ +F +DEI +L + + E+L P DF+ + + V +L Sbjct: 448 RVESRNPVFMLDEIDKLGADFRGDPASALLEVLDPEQNSDFRDNYI--------EVGFDL 499 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEA 207 S+ I ++ + PL DR I + E E + + +V R K GL + Sbjct: 500 SQVMFITTANQLETIPPPLLDRMEIISISGYTEGEKVEIAKQYLVPRQLKENGLKPEEAQ 559 Query: 208 ACEIAMRS 215 A+R+ Sbjct: 560 FTAEALRT 567 >gi|294101443|ref|YP_003553301.1| AAA ATPase central domain protein [Aminobacterium colombiense DSM 12261] gi|293616423|gb|ADE56577.1| AAA ATPase central domain protein [Aminobacterium colombiense DSM 12261] Length = 424 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 29/171 (16%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP +L++F GQ + + L+ +++ K + + GPPG+GKTTL +++A Sbjct: 15 MRPSSLDDFVGQNHLLAPGTPLRQILQSGKVPS-----CVLYGPPGVGKTTLVRLMAM-- 67 Query: 79 GVNFRS--TSGPVIAKAGDLAALLTNLEDRDVL-------FIDEIHRLSIIVEEILYPAM 129 V RS V AK +L L+ ++ +L F+DEI+ + + L P++ Sbjct: 68 -VTERSLLEINAVSAKVSELRDLVEEAKNLKILSGSAAIAFVDEIYHFNKSQQNALLPSV 126 Query: 130 EDFQLDLMVG---EGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQD 172 E + ++VG E P K LSR + +A V +L L+D Sbjct: 127 EKGDI-ILVGTTTENPWFEINKTLLSRLVVFQLKPLAEEDLVQILYKALKD 176 >gi|255552465|ref|XP_002517276.1| calmodulin-binding protein, putative [Ricinus communis] gi|223543539|gb|EEF45069.1| calmodulin-binding protein, putative [Ricinus communis] Length = 1094 Score = 43.1 bits (100), Expect = 0.062, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 16/109 (14%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79 E+ GQ E + L +E + +A VL GPPG KT +A+ VA E G Sbjct: 740 EDVGGQKEVKAQLMEAVEWPQKHQDAFQRIGTRPPTGVLMFGPPGCSKTLMARAVASEAG 799 Query: 80 VNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSII 120 +NF + GP + G+ + +L + ++F DEI L++I Sbjct: 800 LNFFAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVI 848 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GP G GKT+LA++ A + GVN S +GP I Sbjct: 455 VLLHGPTGTGKTSLARLCALDAGVNLLSVNGPEI 488 >gi|190347750|gb|EDK40085.2| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC 6260] Length = 347 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L++ Q A + LK + +A L H+LF GPPG GKT+ +AREL Sbjct: 27 RPKNLDDVASQDHAVNVLKKSLVSAN-----LPHMLFYGPPGTGKTSTVLALAREL 77 >gi|325478877|gb|EGC81987.1| ATP-dependent metallopeptidase HflB [Anaerococcus prevotii ACS-065-V-Col13] Length = 651 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +T ++ GQ EA +L ++ + A+ VL VGPPG GKT +AQ VA E Sbjct: 170 KTFKDVAGQEEAKDSLSEIVDFLHNPGKYKEIGAKVPKGVLLVGPPGTGKTLMAQAVAGE 229 Query: 78 LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 V F S SG + A + L +++ ++FIDEI Sbjct: 230 ANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 274 >gi|315186751|gb|EFU20509.1| ATP dependent PIM1 peptidase [Spirochaeta thermophila DSM 6578] Length = 790 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVN-FRSTSG------------- 87 F+ K + E ++ VGPPG+GKT++ + +AR LG FR + G Sbjct: 343 FLAVRKIKQETKGSIICLVGPPGVGKTSIGKSIARALGRKFFRFSVGGMRDEAEIKGHRR 402 Query: 88 -PVIAKAGDLAALLTNLEDRDVLF-IDEIHRLSIIVE--------EILYP----AMEDFQ 133 + A G + L ++ ++ +F IDEI +L I + E+L P A D Sbjct: 403 TYIGAMPGKIIQGLKIVKTKNPVFMIDEIDKLGISFQGDPASALLEVLDPEQNVAFRDHY 462 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 LD V ++S+ IA + + PL DR + IRL+ Y IE+ K + Sbjct: 463 LD-----------VPFDISKILFIATANTLDTIPRPLLDRMEV-IRLSGY-IEEEKIAIA 509 Query: 194 R 194 R Sbjct: 510 R 510 >gi|293401426|ref|ZP_06645569.1| cell division protein FtsH [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305064|gb|EFE46310.1| cell division protein FtsH [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 617 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +T + GQ EA +L+ ++ +K A+ L VGPPG GKT LA+ VA E Sbjct: 164 KTFRDVAGQEEAKESLQEMVDFLKDPEKYSKIGAQMPKGALLVGPPGTGKTLLAKAVAGE 223 Query: 78 LGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEI 114 V F S SG + G AA + +L + R+ ++FIDEI Sbjct: 224 ANVPFFSISGSEFVEMFVGRGAARVRDLFKQAREKAPCIVFIDEI 268 >gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii] Length = 331 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP LEE + S + FI + + L H+LF GPPG GKT+ VA++L Sbjct: 17 RPNKLEELISHADILSTIDRFI-----KEDRLPHLLFYGPPGTGKTSTILAVAKQL 67 >gi|288800838|ref|ZP_06406295.1| cell division protein FtsH [Prevotella sp. oral taxon 299 str. F0039] gi|288332299|gb|EFC70780.1| cell division protein FtsH [Prevotella sp. oral taxon 299 str. F0039] Length = 671 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 16/211 (7%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E GV F S SG V A + L +++ ++ Sbjct: 226 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKSPCII 285 Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169 FIDEI + + D + + + N S ++AAT RV +L + Sbjct: 286 FIDEIDAVGRARSKNPSTGGNDERENTLNALLTEMDGFGTN-SGVIILAATNRVDMLDSA 344 Query: 170 L--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 L RF I + ++ + K I Q L + + D +I +R TP +G + Sbjct: 345 LLRAGRFDRQISVELPDLHERKEIFQ--VHLRNVKIDD--TIDIDFLARQTPGFSGADIA 400 Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKM 258 V + + + A+ +++ L A+D++ Sbjct: 401 NVCNESALIAARQNKKQVGKQDFLD-AVDRI 430 >gi|148706233|gb|EDL38180.1| protease, serine, 15, isoform CRA_b [Mus musculus] Length = 978 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%) Query: 14 QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70 Q D ++ L R + + E+ G + + FI ++ R +L F GPPG+GKT++ Sbjct: 491 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 550 Query: 71 AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114 A+ +AR LG FR + G V A G + L + + L IDE+ Sbjct: 551 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 610 Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P LD + V ++LS+ I + + Sbjct: 611 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 663 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 664 PEPLRDRMEM-INVSGYVAQEKLAIAER 690 >gi|39974649|ref|XP_368715.1| hypothetical protein MGG_00529 [Magnaporthe oryzae 70-15] gi|110628929|gb|ABG79929.1| PEX6 protein [Magnaporthe grisea] gi|145018571|gb|EDK02850.1| hypothetical protein MGG_00529 [Magnaporthe oryzae 70-15] Length = 1375 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1020 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1063 >gi|257438694|ref|ZP_05614449.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165] gi|257198829|gb|EEU97113.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165] Length = 688 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ A E GV F S SG V G A+ + +L D+ + Sbjct: 225 VLLVGPPGTGKTLLARACAGEAGVPFYSISGSDFVEMYVGVGASRVRDLFDKAKKTMPCI 284 Query: 109 LFIDEI 114 +FIDEI Sbjct: 285 IFIDEI 290 >gi|254474645|ref|ZP_05088031.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ruegeria sp. R11] gi|214028888|gb|EEB69723.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ruegeria sp. R11] Length = 773 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 23/161 (14%) Query: 10 RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64 +NVS++DA++ R+L+ GQ A L I+ A+A + + + LF GP G Sbjct: 449 KNVSKDDAEVLKDLERSLKRVVFGQDAAIEALSSAIKLARAGLREPEKPIGNYLFAGPTG 508 Query: 65 LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107 +GKT +A+ +A LGV R P D LLT+ D+ Sbjct: 509 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 568 Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 VL +DEI + V IL M++ QL G + R+V Sbjct: 569 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRTVNFRNV 609 >gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica] gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica] Length = 378 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP++L++ + Q A + LK + +A L H+LF GPPG GKT+ +A+EL Sbjct: 33 RPKSLDDVSSQDHAVTVLKRTLGSAN-----LPHMLFYGPPGTGKTSTVLALAKEL 83 >gi|281209849|gb|EFA84017.1| replication factor C subunit [Polysphondylium pallidum PN500] Length = 357 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 ++ RP+T++E + Q E LK +E L H+LF GPPG GKT+ VA +L Sbjct: 18 VNKYRPKTVDEVSHQDEVVKALKRSLETGN-----LPHLLFYGPPGTGKTSTILAVAMDL 72 >gi|238610683|ref|XP_002397785.1| hypothetical protein MPER_01728 [Moniliophthora perniciosa FA553] gi|215472970|gb|EEB98715.1| hypothetical protein MPER_01728 [Moniliophthora perniciosa FA553] Length = 226 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA +A ELGV F + S P I +G+ L D + Sbjct: 89 VLLHGPPGCGKTLLANAIAGELGVPFVNISAPSIVSGMSGESEKGLREAFDEAKRVAPSL 148 Query: 109 LFIDEI 114 LFIDEI Sbjct: 149 LFIDEI 154 >gi|257059785|ref|YP_003137673.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] gi|256589951|gb|ACV00838.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] Length = 646 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 15/107 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA + L+ ++ K+ A+ VL +GPPG GKT LA+ +A E Sbjct: 168 TFEDVAGVDEAKTELQEIVDFLKSAEKYTRLGAKIPKGVLLIGPPGTGKTLLAKAIAGEA 227 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRL 117 GV F S SG + G A+ + +L D+ ++FIDE+ L Sbjct: 228 GVPFFSISGSEFIELFVGIGASRVRDLFDQAKTQAPCIVFIDELDAL 274 >gi|150865911|ref|XP_001385318.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS 6054] gi|149387167|gb|ABN67289.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS 6054] Length = 369 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR L++ Q A LK +E+A L H+LF GPPG GKT+ ++++L Sbjct: 30 RPRNLDDVASQDHAVKVLKKTMESAN-----LPHMLFYGPPGTGKTSTILALSKQL 80 >gi|126739846|ref|ZP_01755537.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter sp. SK209-2-6] gi|126719078|gb|EBA15789.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter sp. SK209-2-6] Length = 743 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 23/161 (14%) Query: 10 RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64 ++VS++DA++ +TL+ GQ +A L I+ A+A + + + LF GP G Sbjct: 419 KSVSKDDAEVLKDLEKTLKRVVFGQDDAIDALSSAIKLARAGLREPEKPIGNYLFAGPTG 478 Query: 65 LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107 +GKT +A+ +A LGV R P D LLT+ D+ Sbjct: 479 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 538 Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 VL +DEI + V IL M++ QL G + R+V Sbjct: 539 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRAVNFRNV 579 >gi|115465954|ref|NP_001056576.1| Os06g0109400 [Oryza sativa Japonica Group] gi|55296101|dbj|BAD67691.1| putative cell survival CED-4-interacting protein MAC-1 [Oryza sativa Japonica Group] gi|55296176|dbj|BAD67894.1| putative cell survival CED-4-interacting protein MAC-1 [Oryza sativa Japonica Group] gi|113594616|dbj|BAF18490.1| Os06g0109400 [Oryza sativa Japonica Group] gi|222634830|gb|EEE64962.1| hypothetical protein OsJ_19854 [Oryza sativa Japonica Group] Length = 770 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 22/127 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107 +L GPPG GKTTLA +A E GV F S P + +G A N+ Sbjct: 228 LLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVV-SGVSGASEENIRSLFKKAYRTAPS 286 Query: 108 VLFIDEIHRLSIIVEEI-----------LYPAMEDFQLDLMVGEGP-SARSVKINLSRFT 155 ++FIDEI ++ E + L M+++ + G G + S + Sbjct: 287 IVFIDEIDAIASKRENLQREMERRIVTQLMTCMDEYHQQIGSGSGDVGSESAEKKPGYVI 346 Query: 156 LIAATTR 162 +I AT R Sbjct: 347 VIGATNR 353 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 19/31 (61%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 L GPPG GKT +A+ VA E G NF GP Sbjct: 533 LLFGPPGCGKTLIAKAVAHEAGANFIHIKGP 563 >gi|331268352|ref|YP_004394844.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum BKT015925] gi|329124902|gb|AEB74847.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum BKT015925] Length = 662 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78 T +E G E + L+ ++ K + LD +L VGPPG GKT LA+ VA E Sbjct: 165 TFKEVAGADEEKAELEEIVDFLKDPNKYLDMGARIPKGILLVGPPGTGKTLLAKAVAGEA 224 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 225 GVPFFSISG 233 >gi|327401967|ref|YP_004342806.1| AAA family ATPase [Archaeoglobus veneficus SNP6] gi|327317475|gb|AEA48091.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus veneficus SNP6] Length = 808 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E+G +F + +GP I G+ L + + + Sbjct: 231 VLLHGPPGTGKTLIAKAVANEIGASFFTINGPEIMSKFYGESEQRLREIFEEAKENAPSI 290 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 291 IFIDEIDSIAPKREEV 306 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 19/31 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT +A+ VA E NF S G Sbjct: 569 VLLYGPPGTGKTLIAKAVANETKANFISVKG 599 >gi|298676049|ref|YP_003727799.1| AAA family ATPase [Methanohalobium evestigatum Z-7303] gi|298289037|gb|ADI75003.1| AAA family ATPase, CDC48 subfamily [Methanohalobium evestigatum Z-7303] Length = 741 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +AQ VA E VNF S GP I Sbjct: 501 LLLFGPPGTGKTLVAQAVANESNVNFISVKGPQI 534 >gi|317133210|ref|YP_004092524.1| ATP-dependent metalloprotease FtsH [Ethanoligenens harbinense YUAN-3] gi|315471189|gb|ADU27793.1| ATP-dependent metalloprotease FtsH [Ethanoligenens harbinense YUAN-3] Length = 622 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 203 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKSSPCI 262 Query: 109 LFIDEI 114 +FIDEI Sbjct: 263 IFIDEI 268 >gi|258405847|ref|YP_003198589.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM 5692] gi|257798074|gb|ACV69011.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM 5692] Length = 636 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 105/252 (41%), Gaps = 42/252 (16%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE T VE SN K F + VL VG PG GKT L++ VA E GV F S SG Sbjct: 163 EELTEIVEFLSNPKKFTRLGGRIPKG---VLLVGGPGTGKTLLSRAVAGEAGVPFFSISG 219 Query: 88 P------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 V A + L + ++FIDEI + Q +G Sbjct: 220 SDFVEMFVGVGASRVRDLFVQGKKNAPCLIFIDEIDAVG-------------RQRGAGLG 266 Query: 140 EGPSARSVKIN-----LSRFT------LIAATTRVGLLTNPL--QDRFGIPIRLNFYEIE 186 G R +N + F LIAAT R +L L RF + + +++ Sbjct: 267 GGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDRQVMVPNPDLK 326 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 K+I++ A+ T LA ++ + +RGTP +G L + + A +A AK + ++ Sbjct: 327 GRKSILEVHARHTPLA----GDVDMGVIARGTPGFSGADLENLVNEAALAAAK-VNKDQV 381 Query: 247 DAALLRLAIDKM 258 D A DK+ Sbjct: 382 DMNDFEDAKDKV 393 >gi|225573067|ref|ZP_03781822.1| hypothetical protein RUMHYD_01258 [Blautia hydrogenotrophica DSM 10507] gi|225039573|gb|EEG49819.1| hypothetical protein RUMHYD_01258 [Blautia hydrogenotrophica DSM 10507] Length = 432 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 28/130 (21%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA---EALD------HVLFVGP 62 +DI+L+ P+ + F GQ EA L V + R ++LD ++L +GP Sbjct: 60 SDINLMTPQEIHNFLDEYVIGQDEAKKALSVAVYNHYKRVMAPKSLDVELQKSNILMLGP 119 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------V 108 G GKT LAQ +A+ L V F + +AG + + N+ D D + Sbjct: 120 TGSGKTLLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYGI 179 Query: 109 LFIDEIHRLS 118 ++IDEI +++ Sbjct: 180 IYIDEIDKIT 189 >gi|171185181|ref|YP_001794100.1| TIP49 domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170934393|gb|ACB39654.1| TIP49 domain protein [Thermoproteus neutrophilus V24Sta] Length = 451 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQ EA + ++ K A VL VGPPG GKT LA +ARELG Sbjct: 39 FVGQTEAREAAYIVVKMIKEGKFAGKGVLIVGPPGTGKTALALGIARELG 88 >gi|187918326|ref|YP_001883889.1| DNA polymerase III subunits gamma and tau [Borrelia hermsii DAH] gi|119861174|gb|AAX16969.1| DNA polymerase III subunit gamma/tau [Borrelia hermsii DAH] Length = 550 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 88/225 (39%), Gaps = 29/225 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE + A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIENNRI-ANAY---IFSGPRGVGKTSSARAFARCLNCQ- 66 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQLD 135 +GP I G + + N D++ ID S+ I EEI++P Sbjct: 67 ---AGPTIMPCGVCFSCKSIDNDNSLDIIEIDGASNTSVQDVRQIKEEIMFPPASSKYRV 123 Query: 136 LMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--YE 184 ++ E + N S I ATT V L + ++ R NF Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPSYIVFIFATTEVHKLPDTIKSRCQ---HFNFRLLP 180 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 +E + +++ + DEA IA +S G+ R A L ++ Sbjct: 181 LEKIYEMLKHVCLEDNIKYEDEALRWIAYKSGGSVRDAYTLFDQI 225 >gi|110003920|emb|CAK98260.1| probable cell division protein ftsh [Spiroplasma citri] Length = 672 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 109/250 (43%), Gaps = 42/250 (16%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE T VE LK + + A A VL GPPG GKT LA+ VA E GV F S SG Sbjct: 194 EEKTELVELVDYLKNPQKYSSMGARAPKGVLMEGPPGTGKTLLAKAVAGEAGVPFFSISG 253 Query: 88 P------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 V A + + + ++FIDEI + + + +G Sbjct: 254 SEFEEMFVGVGASRIREMFIAAKKAAPCIIFIDEIDAVG-------------RKRTVSIG 300 Query: 140 EGPSARSVK---INLSRF------TLIAATTRVGLLTNPL--QDRFGIPIRLNFYEIEDL 188 G + +++ + + F ++AAT RV +L + L RF I+++ +I + Sbjct: 301 SGANEQTLNQLLVEMDGFGTNTGVIVMAATNRVDVLDSALLRPGRFDRQIQISLPDINER 360 Query: 189 KTIVQRGAKLTGLAVTDEAAC-EIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTITR 243 + I++ A+ AV+ E IA R TP +G L V + A + + K IT Sbjct: 361 EAILKLHAR--NKAVSTEVDFRRIAER---TPGFSGAQLENVLNEAAILCVRKNLKIITV 415 Query: 244 EIADAALLRL 253 I D A+ R+ Sbjct: 416 NIIDEAIDRV 425 >gi|67478786|ref|XP_654775.1| Replication factor C subunit 4 [Entamoeba histolytica HM-1:IMSS] gi|56471850|gb|EAL49389.1| Replication factor C subunit 4, putative [Entamoeba histolytica HM-1:IMSS] Length = 329 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 41/234 (17%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71 +S ++A RP+TL++ GQ E LK + + L ++LF GPPG GKTT Sbjct: 1 MSGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSLNSG------LPNLLFFGPPGSGKTTSI 54 Query: 72 QVVARE----------LGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115 VA E L +N + G + + + ++ D ++ +DE Sbjct: 55 LAVAHELFQGYFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGTPDYKLIILDESD 114 Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175 L+ + L MEDF + +RF LI + + P+ R Sbjct: 115 ALTPDAQTALRRMMEDFTKN----------------TRFCLIC--NYISRILPPISSR-C 155 Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 I R + E + +Q + G +VT+EA +++ S G R LL+++ Sbjct: 156 IKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKL 209 >gi|323705587|ref|ZP_08117161.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium xylanolyticum LX-11] gi|323535064|gb|EGB24841.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium xylanolyticum LX-11] Length = 611 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T + G E L+ +E K + LD VL VGPPG GKT LA+ VA E Sbjct: 156 TFNDVAGADEEKEELQEIVEFLKFPKKFLDLGARIPKGVLLVGPPGTGKTLLAKAVAGEA 215 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 216 GVPFFSISG 224 >gi|219127681|ref|XP_002184059.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404290|gb|EEC44237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 349 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81 RPR LE+ G E S L+ A +R L +++ GPPG GKTT +AR+ LG + Sbjct: 39 RPRVLEDVVGNEETVSRLR-----AISRTGNLPNLILAGPPGTGKTTSVHALARQLLGAS 93 Query: 82 FR 83 ++ Sbjct: 94 YK 95 >gi|213409838|ref|XP_002175689.1| ribosome biogenesis ATPase RIX7 [Schizosaccharomyces japonicus yFS275] gi|212003736|gb|EEB09396.1| ribosome biogenesis ATPase RIX7 [Schizosaccharomyces japonicus yFS275] Length = 782 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 21/34 (61%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA +A ELGV F S S P I Sbjct: 210 VLLHGPPGCGKTMLANALANELGVPFISISAPSI 243 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 534 VLLWGPPGCGKTLLAKAVANESKANFISVRGP 565 >gi|146414968|ref|XP_001483454.1| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC 6260] Length = 347 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L++ Q A + LK + +A L H+LF GPPG GKT+ +AREL Sbjct: 27 RPKNLDDVASQDHAVNVLKKSLVSAN-----LPHMLFYGPPGTGKTSTVLALAREL 77 >gi|257076346|ref|ZP_05570707.1| cell division cycle protein 48 [Ferroplasma acidarmanus fer1] Length = 744 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 16/85 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108 VL GPPG GKT +A+ VA E G NF + +GP I L + ++ + + Sbjct: 227 VLLNGPPGTGKTLIAKAVANESGANFFAINGPEIMSKYYGQSEQKLREIFQKADESEPSI 286 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ 133 +FIDEI ++ P ED Q Sbjct: 287 IFIDEIDSIA--------PKREDVQ 303 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DVL 109 L GPPG GKT LA+ VA E NF S GP V++K GD + + + ++ Sbjct: 505 LLYGPPGTGKTLLAKAVANESNANFISVKGPEVLSKWVGDSEKAVREIFKKAKQVSPAII 564 Query: 110 FIDEIHRLS 118 F+DEI ++ Sbjct: 565 FMDEIDSIA 573 >gi|219849535|ref|YP_002463968.1| ATP-dependent metalloprotease FtsH [Chloroflexus aggregans DSM 9485] gi|310943124|sp|B8G4Q6|FTSH_CHLAD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|219543794|gb|ACL25532.1| ATP-dependent metalloprotease FtsH [Chloroflexus aggregans DSM 9485] Length = 656 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78 T + GQ EA +L +E K + AL VL VGPPG GKT L++ VA E Sbjct: 167 TFADVAGQEEAKQDLAEIVEFLKFPDKFAALGARIPRGVLMVGPPGTGKTLLSRAVAGEA 226 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G A+ + +L D+ ++FIDEI Sbjct: 227 GVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEI 270 >gi|50424927|ref|XP_461055.1| DEHA2F16016p [Debaryomyces hansenii CBS767] gi|49656724|emb|CAG89431.1| DEHA2F16016p [Debaryomyces hansenii] Length = 368 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L++ Q A LK +E+A L H+LF GPPG GKT+ +A++L Sbjct: 30 RPKNLDDVASQDHAVKILKKTLESAN-----LPHMLFYGPPGTGKTSTILALAKQL 80 >gi|124515828|gb|EAY57337.1| probable ATPase, AAA family [Leptospirillum rubarum] Length = 444 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 36/214 (16%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SLL P EEF GQ + R+ ++ GPPG GK+ ++ + L Sbjct: 15 SLLFPDRPEEFLGQPHLMGERGILRRLIAVRS--FRSMVIHGPPGCGKSAFVHLLQKVLP 72 Query: 80 VNFR-----STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 +F +SG + KA D +L I+EI R + +++L PA+E L Sbjct: 73 FHFEVVRAGESSGGELKKAIDRGVSYRQSGQDCLLVIEEIDRFTRTQQDVLVPALERGDL 132 Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI--EDLKTIV 192 L++G ++ + L PL R + +F + EDL T++ Sbjct: 133 -LLLG-----------------LSFDNPLRALLPPLASRL---LLFSFQPLSPEDLLTLL 171 Query: 193 QRGAKL------TGLAVTDEAACEIAMRSRGTPR 220 +RG + + ++++ EAA + RS G R Sbjct: 172 ERGRQFLEKRDRSPVSISPEAASVLVRRSGGDGR 205 >gi|12836291|dbj|BAB23591.1| unnamed protein product [Mus musculus] Length = 949 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%) Query: 14 QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70 Q D ++ L R + + E+ G + + FI ++ R +L F GPPG+GKT++ Sbjct: 462 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 521 Query: 71 AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114 A+ +AR LG FR + G V A G + L + + L IDE+ Sbjct: 522 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 581 Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P LD + V ++LS+ I + + Sbjct: 582 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 634 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 635 PEPLRDRMEM-INVSGYVAQEKLAIAER 661 >gi|86142240|ref|ZP_01060750.1| hypothetical protein MED217_11359 [Leeuwenhoekiella blandensis MED217] gi|85830992|gb|EAQ49449.1| hypothetical protein MED217_11359 [Leeuwenhoekiella blandensis MED217] Length = 1632 Score = 43.1 bits (100), Expect = 0.066, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 K+R + + +L + PPG GKTTL + +A LG+ F +GP I Sbjct: 1260 KSRTDRMGLLLLISPPGYGKTTLMEYIANRLGLVFMKINGPAIG 1303 >gi|15790604|ref|NP_280428.1| cell division cycle protein [Halobacterium sp. NRC-1] gi|169236341|ref|YP_001689541.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] gi|10581124|gb|AAG19908.1| cell division cycle protein [Halobacterium sp. NRC-1] gi|167727407|emb|CAP14195.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] Length = 394 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKA-GDLAALLTNL------EDRDV 108 +LF GPPG GKT LA+ VA+E G + +GP +I+K G+ ++ + + R + Sbjct: 192 ILFHGPPGTGKTLLAKAVAKETGSSIYLVNGPEIISKWYGETEDIIREIFSNAKKKKRAI 251 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 252 IFIDEVDSIA 261 >gi|307187495|gb|EFN72557.1| Vacuolar protein sorting-associating protein 4A [Camponotus floridanus] Length = 440 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELG--VNFRSTSGPVIAKA-GDLAALLTNL------EDRD 107 +L GPPG GK+ LA+ VA E F ++S +++K G+ L+ NL ++R Sbjct: 166 ILLFGPPGTGKSYLAKAVATEANQATFFSASSSDLVSKWLGESEKLVKNLFELARQKERS 225 Query: 108 VLFIDEIHRL 117 ++FIDEI L Sbjct: 226 IIFIDEIDSL 235 >gi|288932521|ref|YP_003436581.1| ATPase AAA, CDC48 subfamily [Ferroglobus placidus DSM 10642] gi|288894769|gb|ADC66306.1| AAA family ATPase, CDC48 subfamily [Ferroglobus placidus DSM 10642] Length = 805 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E+G F + +GP I G+ L + ++ + Sbjct: 229 VLLYGPPGTGKTLIAKAVANEIGATFLTINGPEIMSKFYGESEQRLREIFEKAKENAPSI 288 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 289 IFIDEIDAIA 298 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 19/31 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT +A+ VA E NF S G Sbjct: 568 VLLYGPPGTGKTLIAKAVANESEANFISVKG 598 >gi|218197427|gb|EEC79854.1| hypothetical protein OsI_21333 [Oryza sativa Indica Group] Length = 770 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 22/127 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107 +L GPPG GKTTLA +A E GV F S P + +G A N+ Sbjct: 228 LLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVV-SGVSGASEENIRSLFKKAYRTAPS 286 Query: 108 VLFIDEIHRLSIIVEEI-----------LYPAMEDFQLDLMVGEGP-SARSVKINLSRFT 155 ++FIDEI ++ E + L M+++ + G G + S + Sbjct: 287 IVFIDEIDAIASKRENLQREMERRIVTQLMTCMDEYHQQIGSGSGDVGSESAEKKPGYVI 346 Query: 156 LIAATTR 162 +I AT R Sbjct: 347 VIGATNR 353 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 19/31 (61%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 L GPPG GKT +A+ VA E G NF GP Sbjct: 533 LLFGPPGCGKTLIAKAVAHEAGANFIHIKGP 563 >gi|116329595|ref|YP_799314.1| MoxR-like ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332484|ref|YP_802201.1| MoxR-like ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122488|gb|ABJ80381.1| MoxR-like ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116127351|gb|ABJ77443.1| MoxR-like ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 335 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 31/214 (14%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 M+++ L + +V + L+ +E TGQ E N+ V + HVL G Sbjct: 7 MEKDPLSAEDVEFARIKLETLKKELEKEITGQNEVIRNVIVCLICQ-------GHVLLEG 59 Query: 62 PPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTN-----LEDRD------VL 109 PGL KT LA+ +AR L ++F+ P + A + ++ N E R VL Sbjct: 60 MPGLAKTLLARSLARALDLDFKRIQFTPDLLPADLVGTVVFNPKTAEFETRKGPVFTGVL 119 Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL-TN 168 DEI+R V+ L +ME + + +G+ ++ K++ F +IA + T Sbjct: 120 LADEINRAPAKVQSALLESME--EKTITIGD----KTYKLD-KPFLVIATQNPIDQDGTY 172 Query: 169 PL----QDRFGIPIRLNFYEIEDLKTIVQRGAKL 198 PL DRF + + +++ +E+ +I+ + KL Sbjct: 173 PLPEAQMDRFFMKVNVHYPALEEEVSILDQHGKL 206 >gi|84500106|ref|ZP_00998372.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola batsensis HTCC2597] gi|84392040|gb|EAQ04308.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola batsensis HTCC2597] Length = 776 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 23/161 (14%) Query: 10 RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64 +NV+++DA++ +TL+ GQ A +L I+ A+A + + + LF GP G Sbjct: 452 KNVTKDDAEVLKDLEQTLKRVVFGQDLAIESLSSAIKLARAGLREPEKPIGNYLFAGPTG 511 Query: 65 LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107 +GKT +A+ +A LGV R P D LLT+ D+ Sbjct: 512 VGKTEVAKQLADSLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 571 Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 VL +DEI + V IL M++ QL G + R+V Sbjct: 572 CVLLLDEIEKAHPDVYNILLQVMDNGQLTDHNGRTVNFRNV 612 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 31/113 (27%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTS------------GPVIAKA---GD---- 95 ++ L VG PG+GKT +A+ +AR++ V+ + S G ++A GD Sbjct: 221 NNPLLVGDPGVGKTAIAEGLARKI-VSGETPSVLANTTIYSLDMGALLAGTRYRGDFEER 279 Query: 96 LAALLTNLEDRD--VLFIDEIHRL---------SIIVEEILYPAMEDFQLDLM 137 L A++T LED + VLFIDEIH + ++ +L PA++ +L M Sbjct: 280 LKAVVTELEDHEDAVLFIDEIHTVIGAGATSGGAMDASNLLKPALQGGKLRCM 332 >gi|257067200|ref|YP_003153456.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM 20548] gi|256799080|gb|ACV29735.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM 20548] Length = 662 Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +T ++ GQ EA +L ++ + A+ VL VGPPG GKT +AQ VA E Sbjct: 170 KTFKDVAGQEEAKDSLSEIVDFLHNPGKYKEIGAKVPKGVLLVGPPGTGKTLMAQAVAGE 229 Query: 78 LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 V F S SG + A + L +++ ++FIDEI Sbjct: 230 ANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 274 >gi|224150428|ref|XP_002336955.1| predicted protein [Populus trichocarpa] gi|222837218|gb|EEE75597.1| predicted protein [Populus trichocarpa] Length = 316 Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG--PVIAKAGDLAALLTNLEDRD------V 108 VLF GPPG KT LA+ +A E NF S G P+ G+ A + ++ D+ V Sbjct: 190 VLFYGPPGCDKTLLAKAIANECQANFISIKGPEPLTMWFGESEANVRDVFDKARQSAPCV 249 Query: 109 LFIDEIHRLSI 119 LF DE+ ++I Sbjct: 250 LFFDELDSIAI 260 >gi|222152178|ref|YP_002561338.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus caseolyticus JCSC5402] gi|222121307|dbj|BAH18642.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus caseolyticus JCSC5402] Length = 546 Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELG 79 + R ++ EE GQ + LK I+ K + H LF GP G GKT++A++ A+ + Sbjct: 9 VFRSQSFEEVVGQKHVTTTLKNAIQKNK-----ISHAYLFNGPRGTGKTSIAKIFAKAIN 63 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 + P + D +T + DV+ ID Sbjct: 64 CTVSTDGEP--CNSCDTCVSITKGTNSDVIEID 94 >gi|218191427|gb|EEC73854.1| hypothetical protein OsI_08618 [Oryza sativa Indica Group] Length = 729 Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPRTL FT E LK + E H++F GPPG GK++L + V E+ Sbjct: 380 YRPRTLGGFTCHREQIEQLKQLVST-----EFCPHIIFKGPPGSGKSSLCRAVVTEI 431 >gi|161527523|ref|YP_001581349.1| ATPase AAA [Nitrosopumilus maritimus SCM1] gi|160338824|gb|ABX11911.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1] Length = 713 Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101 K EA VL GPPG GKT LA+ VA E +F S SGP I + + Sbjct: 205 KIGVEAPKGVLLYGPPGTGKTLLAKAVAGETNAHFISLSGPEIMGKYYGESEEKIREIFN 264 Query: 102 NLEDR--DVLFIDEIHRLS 118 E+ ++FIDEI ++ Sbjct: 265 QAEENSPSIIFIDEIDSIA 283 >gi|119872171|ref|YP_930178.1| replication factor C large subunit [Pyrobaculum islandicum DSM 4184] gi|150415668|sp|A1RSA3|RFCL_PYRIL RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|119673579|gb|ABL87835.1| replication factor C large subunit [Pyrobaculum islandicum DSM 4184] Length = 423 Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 15/71 (21%) Query: 23 RPRTLEEFTGQVEA--------CSNLKVFIEAAKARAEALDH-------VLFVGPPGLGK 67 RP+T EE Q EA C+ K E A+ D VL GPPG+GK Sbjct: 10 RPKTFEEIVNQEEAKYTLASWICAKFKAPREFCTRWAKKKDKEIVEAKAVLLAGPPGIGK 69 Query: 68 TTLAQVVAREL 78 TT+ +ARE+ Sbjct: 70 TTIVHALAREI 80 >gi|325853892|ref|ZP_08171408.1| ATP-dependent metallopeptidase HflB [Prevotella denticola CRIS 18C-A] gi|325484229|gb|EGC87159.1| ATP-dependent metallopeptidase HflB [Prevotella denticola CRIS 18C-A] Length = 676 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 51/264 (19%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ A ++ +E K + D L +GPPG GKT LA+ VA E Sbjct: 190 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLIGPPGTGKTLLAKAVAGEA 249 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130 GV F S SG V A + + +++ ++FIDEI + + PAM Sbjct: 250 GVPFFSMSGSDFVEMFVGVGASRVRDVFRQAKEKSPCIIFIDEIDAVGRARSK--NPAM- 306 Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177 G R +N S ++AAT RV +L L RF Sbjct: 307 ---------GGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQ 357 Query: 178 IRLNFYEIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 I ++ ++ + K I R KL E +I + +R TP +G + V + A Sbjct: 358 IHVDLPDLTERKAIFLVHMRPLKL-------EKNLDIDLLARQTPGFSGADIANVCNEAA 410 Query: 235 VAHAKTITREIADAALLRLAIDKM 258 + A+ +++++ L A+D++ Sbjct: 411 LIAARHNSKDVSKQDFLD-AVDRI 433 >gi|301631595|ref|XP_002944883.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like [Xenopus (Silurana) tropicalis] Length = 421 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ +++ L Sbjct: 117 NILLIGPTGSGKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIISKLLQSCNYDV 176 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 EKAQRGIIYIDEIDKIS 193 >gi|300711240|ref|YP_003737054.1| cell division control protein 48 [Halalkalicoccus jeotgali B3] gi|299124923|gb|ADJ15262.1| cell division control protein 48 [Halalkalicoccus jeotgali B3] Length = 701 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 24/41 (58%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 K E VL GPPG GKT LA+ +A E GVNF +GP Sbjct: 474 KTATEPPSGVLLYGPPGTGKTLLARAIASESGVNFIHVAGP 514 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ +F + SGP I Sbjct: 220 VLLYGPPGTGKTLIARAVANEVDASFHTVSGPEI 253 >gi|219123158|ref|XP_002181897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406498|gb|EEC46437.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 550 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Query: 29 EFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGV 80 + G E N++ +E R E H VL GPPG GKT LA VA +LGV Sbjct: 1 DLGGMDEVVKNIRQLVEYPLIRPELYSHLGVDPPRGVLLRGPPGTGKTHLANAVAGQLGV 60 Query: 81 NFRSTSGP 88 F S P Sbjct: 61 PFFRVSAP 68 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 V+ GPPG GKT LA+ +A E G NF S GP Sbjct: 317 VMLYGPPGCGKTLLAKAIAHESGANFISVKGP 348 >gi|145591861|ref|YP_001153863.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum arsenaticum DSM 13514] gi|145283629|gb|ABP51211.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum arsenaticum DSM 13514] Length = 737 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 17/118 (14%) Query: 24 PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR E G +E A ++ +E E H +L +GPPG GKT LA+ V Sbjct: 171 PRITWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 230 Query: 75 ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 A E F + +GP I G+ A L + + ++FIDEI ++ EE+ Sbjct: 231 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 288 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG+GKT A+ VA E G NF + GP Sbjct: 501 ILLFGPPGVGKTLFAKAVATESGANFIAVRGP 532 >gi|116753926|ref|YP_843044.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta thermophila PT] gi|116665377|gb|ABK14404.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT] Length = 721 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E G+NF S GP Sbjct: 484 VLLYGPPGTGKTMIARAVATESGINFISIKGP 515 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 16/131 (12%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGP 62 N++ E + R T E+ G ++ +E E VL GP Sbjct: 158 NITSEQIEGFQFRDVTYEDIGGLSREIRAIREMVELPLRHPEVFQKLGITPPKGVLLHGP 217 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL-EDR-----DVLFIDEI 114 PG GKT +A+ VA E F + SGP I G+ L + ED ++FIDEI Sbjct: 218 PGTGKTLIARAVASETDATFTAISGPEIMSRYYGESEQRLRQIFEDAQKSAPSIIFIDEI 277 Query: 115 HRLSIIVEEIL 125 ++ EE+L Sbjct: 278 DSIAPKREEVL 288 >gi|116182002|ref|XP_001220850.1| hypothetical protein CHGG_01629 [Chaetomium globosum CBS 148.51] gi|88185926|gb|EAQ93394.1| hypothetical protein CHGG_01629 [Chaetomium globosum CBS 148.51] Length = 1421 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 1021 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1064 >gi|291457503|ref|ZP_06596893.1| proteasome-activating nucleotidase [Bifidobacterium breve DSM 20213] gi|291381338|gb|EFE88856.1| proteasome-activating nucleotidase [Bifidobacterium breve DSM 20213] Length = 401 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIE-----AAKARA---EALDHVLFVGPPGLGKTTLAQVVARE 77 T + F G + + K IE +A+ RA + + V+F G PG GKT LA+++A Sbjct: 151 TFDSFGGYEQVITRAKELIETQLGNSAQMRAIGAKPIKGVIFTGAPGTGKTHLARIIANV 210 Query: 78 LGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDVLFIDEIHRLS 118 F SGP I GD L + R ++F DEI ++ Sbjct: 211 ADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQADKRAIIFFDEIDSIA 259 >gi|255549872|ref|XP_002515987.1| Cell division protein ftsH, putative [Ricinus communis] gi|223544892|gb|EEF46407.1| Cell division protein ftsH, putative [Ricinus communis] Length = 884 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108 +L GPPG+GKT LA+ VA E GVNF S S + A + +L ++ V Sbjct: 455 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKENAPSV 514 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 515 VFIDEL 520 >gi|167629386|ref|YP_001679885.1| ATP-dependent metalloprotease ftsh [Heliobacterium modesticaldum Ice1] gi|167592126|gb|ABZ83874.1| ATP-dependent metalloprotease ftsh [Heliobacterium modesticaldum Ice1] Length = 601 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE + K F+E A+ VL GPPG GKT LA+ VA E GV F S SG Sbjct: 168 EELQEVVEFLKHPKKFVELG---AKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISG 224 >gi|167393557|ref|XP_001740625.1| hypothetical protein [Entamoeba dispar SAW760] gi|165895198|gb|EDR22945.1| hypothetical protein, conserved [Entamoeba dispar SAW760] Length = 439 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--VNFRSTSG 87 GQ A L + +E KA+ A +L G PG GKT LAQ +A+ELG V FR+ G Sbjct: 39 LVGQENAREALGLIVEMVKAKRMAGRGILLAGAPGTGKTALAQALAKELGEHVPFRAMVG 98 >gi|163737811|ref|ZP_02145228.1| ATP-dependent Clp protease ATP-binding subunit clpA [Phaeobacter gallaeciensis BS107] gi|161389337|gb|EDQ13689.1| ATP-dependent Clp protease ATP-binding subunit clpA [Phaeobacter gallaeciensis BS107] Length = 773 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 23/161 (14%) Query: 10 RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPG 64 +NVS++DA++ R+L+ GQ A L I+ A+A + + + LF GP G Sbjct: 449 KNVSKDDAEVLKDLERSLKRVVFGQDAAIDALSSAIKLARAGLREPEKPIGNYLFAGPTG 508 Query: 65 LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107 +GKT +A+ +A LGV R P D LLT+ D+ Sbjct: 509 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 568 Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 VL +DEI + V IL M++ QL G + R+V Sbjct: 569 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRTVNFRNV 609 >gi|146422813|ref|XP_001487341.1| hypothetical protein PGUG_00718 [Meyerozyma guilliermondii ATCC 6260] Length = 1159 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 872 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 903 >gi|115676917|ref|XP_797089.2| PREDICTED: similar to peroxisome biogenesis disorder protein 1 [Strongylocentrotus purpuratus] gi|115925913|ref|XP_001181846.1| PREDICTED: similar to peroxisome biogenesis disorder protein 1 [Strongylocentrotus purpuratus] Length = 1508 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT L VVA+E G+NF S GP Sbjct: 1032 LLLYGPPGTGKTLLGGVVAKECGLNFISIKGP 1063 >gi|26984237|gb|AAN85210.1| mitochondrial ATP-dependent protease Lon [Mus musculus] Length = 949 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%) Query: 14 QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70 Q D ++ L R + + E+ G + + FI ++ R +L F GPPG+GKT++ Sbjct: 462 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 521 Query: 71 AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114 A+ +AR LG FR + G V A G + L + + L IDE+ Sbjct: 522 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 581 Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P LD + V ++LS+ I + + Sbjct: 582 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 634 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 635 PEPLRDRMEM-INVSGYVAQEKLAIAER 661 >gi|51246773|ref|YP_066657.1| ATP-dependent protease La [Desulfotalea psychrophila LSv54] gi|50877810|emb|CAG37650.1| probable ATP-dependent protease La [Desulfotalea psychrophila LSv54] Length = 489 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 36/164 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98 + FVGPPG+GKT+L + VAR +G F R+ G + + + Sbjct: 58 LCFVGPPGVGKTSLGKSVARAMGRKFHRLSLGGMRDEAEIRGHRRTYIGAMPGRI--IQG 115 Query: 99 LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 L T + V +DEI ++ S + E+L P +D + + ++ Sbjct: 116 LKTVATNNPVFMMDEIDKVGSDYRGDPSSALLEVLDPEQNSDFVD-------NYLDIPMD 168 Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 LS+ I + PL DR I IRL+ Y +E+ I +R Sbjct: 169 LSQVMFITTANMTDTIPGPLLDRMEI-IRLSGYTLEEKIAIARR 211 >gi|330804227|ref|XP_003290099.1| hypothetical protein DICPUDRAFT_154583 [Dictyostelium purpureum] gi|325079808|gb|EGC33391.1| hypothetical protein DICPUDRAFT_154583 [Dictyostelium purpureum] Length = 1015 Score = 42.7 bits (99), Expect = 0.069, Method: Composition-based stats. Identities = 68/278 (24%), Positives = 108/278 (38%), Gaps = 67/278 (24%) Query: 8 LSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGL 65 L NV D DIS ++ + G + ++ FI K R + L VGPPG Sbjct: 522 LPWNVFSSDCLDISKIKKSLDNDHYGLKDVKEMIQTFIAVGKLRGSIGGKIILIVGPPGT 581 Query: 66 GKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAALLTNLEDRD 107 GKT++ + +A+ L F R+ G + K + AL Sbjct: 582 GKTSIGKSIAKSLDRQFYRISVGGLSDVHEIKGHRRTYLGAMPGKI--IQALKFVKTSNP 639 Query: 108 VLFIDEIHRLS---------IIVEEILYP----AMEDFQLDLMVGEGPSARSVKINLSRF 154 V+ IDEI ++S + EIL P + D+ LDL +LS+ Sbjct: 640 VILIDEIDKISQSSHHGDPTSTLLEILDPQQNKSFTDYYLDL-----------PYDLSKV 688 Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLN------------FYEIEDLKTIVQRGAKLTGLA 202 I + + PL DR + IRLN Y I +++T + G + Sbjct: 689 LFICTANSLHTIPPPLLDRMDV-IRLNGYVQSEQMEIAKHYLIPNIRT--ETGMTEDQVT 745 Query: 203 VTDEAA---CEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 V+D++ CE R G R + + ++ F ++AH Sbjct: 746 VSDDSIKQLCEFYCRESGV-RNLKKTIEKI--FRKIAH 780 >gi|319936956|ref|ZP_08011366.1| cell division protein ftsH [Coprobacillus sp. 29_1] gi|319807892|gb|EFW04471.1| cell division protein ftsH [Coprobacillus sp. 29_1] Length = 655 Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 45/95 (47%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE T V+ N K F+ A+ VL VGPPG GKT LA+ VA E V F S SG Sbjct: 181 EELTELVDFLKNPKKFVSMG---AKIPRGVLLVGPPGTGKTLLARAVAGEANVPFYSISG 237 Query: 88 P------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 V AG + + + ++FIDEI Sbjct: 238 SEFVEMFVGVGAGRVRDMFKKAKQNAPCIIFIDEI 272 >gi|296454485|ref|YP_003661628.1| vesicle-fusing ATPase [Bifidobacterium longum subsp. longum JDM301] gi|296183916|gb|ADH00798.1| Vesicle-fusing ATPase [Bifidobacterium longum subsp. longum JDM301] Length = 402 Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIE-----AAKARA---EALDHVLFVGPPGLGKTTLAQVVARE 77 T + F G + + K IE +A+ RA + + V+F G PG GKT LA+++A Sbjct: 151 TFDSFGGYEQVITRAKELIETQLGNSAQMRAIGAKPIKGVIFTGAPGTGKTHLARIIANV 210 Query: 78 LGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDVLFIDEIHRLS 118 F SGP I GD L + R ++F DEI ++ Sbjct: 211 ADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQADKRAIIFFDEIDSIA 259 >gi|213691690|ref|YP_002322276.1| Vesicle-fusing ATPase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523151|gb|ACJ51898.1| Vesicle-fusing ATPase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457780|dbj|BAJ68401.1| putative ATPase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 402 Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIE-----AAKARA---EALDHVLFVGPPGLGKTTLAQVVARE 77 T + F G + + K IE +A+ RA + + V+F G PG GKT LA+++A Sbjct: 151 TFDSFGGYEQVITRAKELIETQLGNSAQMRAIGAKPIKGVIFTGAPGTGKTHLARIIANV 210 Query: 78 LGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDVLFIDEIHRLS 118 F SGP I GD L + R ++F DEI ++ Sbjct: 211 ADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQADKRAIIFFDEIDSIA 259 >gi|190344856|gb|EDK36620.2| hypothetical protein PGUG_00718 [Meyerozyma guilliermondii ATCC 6260] Length = 1159 Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 872 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 903 >gi|222480785|ref|YP_002567022.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC 49239] gi|222453687|gb|ACM57952.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC 49239] Length = 754 Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ NF + SGP I Sbjct: 228 VLLHGPPGTGKTLIAKAVANEIDANFHTISGPEI 261 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A VL GPPG GKT LA+ VA E NF S GP Sbjct: 496 QAAKGVLMYGPPGTGKTLLAKAVANESESNFISIKGP 532 >gi|2062173|gb|AAB63647.1| cell division protein FtsH isolog [Arabidopsis thaliana] Length = 983 Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108 +L GPPG+GKT LA+ VA E GVNF S S + A + AL + V Sbjct: 608 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSV 667 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 668 VFIDEL 673 >gi|328952154|ref|YP_004369488.1| anti-sigma H sporulation factor, LonB [Desulfobacca acetoxidans DSM 11109] gi|328452478|gb|AEB08307.1| anti-sigma H sporulation factor, LonB [Desulfobacca acetoxidans DSM 11109] Length = 822 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 92/223 (41%), Gaps = 57/223 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+LA+ VAR LG NF R + G V +A G + L Sbjct: 363 LCLVGPPGVGKTSLAKSVARALGRNFVRLSLGGVRDEAEIRGHRRTYIGALPGKIIQSLR 422 Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 + + +F +DE+ ++S + E+L P A D LD+ Sbjct: 423 KAKTNNPVFCLDEVDKMSTDFRGDPSAALLEVLDPEQNNAFNDHYLDM-----------D 471 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDLKT----IVQRGAKLTGLAV 203 +LS I + + PLQDR I IR+ Y E+E L ++ + + GL Sbjct: 472 YDLSEVMFITTANTLYSIPLPLQDRMEI-IRIPGYTEVEKLNIAQLFLIPKQRQANGLTP 530 Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 + E A +L +R + A + + REIA Sbjct: 531 ENIEFSENA------------ILNVIRQYTREAGVRNLEREIA 561 >gi|313113476|ref|ZP_07799065.1| ATP-dependent metallopeptidase HflB [Faecalibacterium cf. prausnitzii KLE1255] gi|310624203|gb|EFQ07569.1| ATP-dependent metallopeptidase HflB [Faecalibacterium cf. prausnitzii KLE1255] Length = 723 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ A E GV F S SG V G A+ + +L D+ + Sbjct: 250 VLLVGPPGTGKTLLARACAGEAGVPFYSISGSDFVEMYVGVGASRVRDLFDKAKKSMPCI 309 Query: 109 LFIDEI 114 +FIDEI Sbjct: 310 IFIDEI 315 >gi|302344647|ref|YP_003809176.1| ATP-dependent protease La [Desulfarculus baarsii DSM 2075] gi|301641260|gb|ADK86582.1| ATP-dependent protease La [Desulfarculus baarsii DSM 2075] Length = 812 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 48/217 (22%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS--------------- 86 F+ K E +L FVGPPG+GKT+L + +AR +G F S Sbjct: 367 FLAVRKLNPEVQGSILCFVGPPGVGKTSLGRSIARSMGRKFSRISLGGVRDEAEIRGHRR 426 Query: 87 GPVIAKAGDLAALLTNLEDRD-VLFIDEIHRL--------SIIVEEILYP----AMEDFQ 133 V A G + + + ++ VL +DEI +L S + E+L P + D Sbjct: 427 TYVGAMPGRIIQSIRRVGSKNPVLMLDEIDKLGADFRGDPSSALLEVLDPEQNRSFSDHY 486 Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----L 188 LD V +LS+ + + + PL+DR I I + Y E+ Sbjct: 487 LD-----------VAFDLSKVMFVTTANVLDTIPAPLRDRMEI-IEIPGYTAEEKLKIAK 534 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRS--RGTPRIAG 223 + +V R KL GL + A + A+ + +G R AG Sbjct: 535 RYLVPRQRKLHGLGAANLAINDGAINALIQGYTREAG 571 >gi|74187378|dbj|BAE36666.1| unnamed protein product [Mus musculus] Length = 949 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%) Query: 14 QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70 Q D ++ L R + + E+ G + + FI ++ R +L F GPPG+GKT++ Sbjct: 462 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 521 Query: 71 AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114 A+ +AR LG FR + G V A G + L + + L IDE+ Sbjct: 522 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 581 Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P LD + V ++LS+ I + + Sbjct: 582 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 634 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 635 PEPLRDRMEM-INVSGYVAQEKLAIAER 661 >gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium dendrobatidis JAM81] Length = 358 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP L+E + S + FI+ K L H+LF GPPG GKT+ AR+L G Sbjct: 43 RPSRLDELISHKDIISTIVRFIDENK-----LPHMLFYGPPGTGKTSTILACARKLYGDK 97 Query: 82 FRS 84 FRS Sbjct: 98 FRS 100 >gi|304407484|ref|ZP_07389136.1| Sigma 54 interacting domain protein [Paenibacillus curdlanolyticus YK9] gi|304343435|gb|EFM09277.1| Sigma 54 interacting domain protein [Paenibacillus curdlanolyticus YK9] Length = 567 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 8/95 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ +++ GQ++ LK + +A + HV+ GPPG+GKT A+VV E N Sbjct: 64 RPQAMQDIVGQIDGLKALKAALCSANPQ-----HVIIYGPPGVGKTAAARVVLEEAKKNP 118 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVL--FIDEIH 115 S P AK ++ A ++R + I +H Sbjct: 119 ASPFLPE-AKFTEIDATTARFDERGIADPLIGSVH 152 >gi|169839076|ref|ZP_02872264.1| Holliday junction DNA helicase B [candidate division TM7 single-cell isolate TM7a] Length = 53 Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 29/52 (55%) Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 G + PL+DRFG+ RL FY E+L IVQ + G AA E+A RS Sbjct: 1 GYDSAPLRDRFGMDFRLQFYTREELARIVQIASVKLGKECEKAAALEVAARS 52 >gi|166368947|ref|YP_001661220.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166091320|dbj|BAG06028.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 625 Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV+F S SG + G AA + +L ++ + Sbjct: 205 VLLVGPPGTGKTLLAKAVAGEAGVSFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCI 264 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 265 IFIDEL 270 >gi|18401080|ref|NP_566541.1| EMB2083 (embryo defective 2083); ATP binding / ATP-dependent peptidase/ ATPase/ metalloendopeptidase/ metallopeptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase [Arabidopsis thaliana] gi|332642273|gb|AEE75794.1| AAA-type ATPase family protein [Arabidopsis thaliana] Length = 876 Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108 +L GPPG+GKT LA+ VA E GVNF S S + A + AL + V Sbjct: 446 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSV 505 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 506 VFIDEL 511 >gi|304315869|ref|YP_003851014.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777371|gb|ADL67930.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 611 Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T + G E L+ +E K + LD VL VGPPG GKT LA+ VA E Sbjct: 156 TFNDVAGADEEKEELQEIVEFLKFPKKFLDLGARIPKGVLLVGPPGTGKTLLAKAVAGEA 215 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 216 GVPFFSISG 224 >gi|261405362|ref|YP_003241603.1| Sigma 54 interacting domain-containing protein [Paenibacillus sp. Y412MC10] gi|261281825|gb|ACX63796.1| Sigma 54 interacting domain protein [Paenibacillus sp. Y412MC10] Length = 576 Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 R+VS RP+T+++ GQ + LK + +A + HV+ GPPG+GKT Sbjct: 51 RSVSLTKPLAEKTRPQTMDDIVGQKDGLRALKAALCSANPQ-----HVIVYGPPGVGKTA 105 Query: 70 LAQVVARELGVNFRS 84 A+VV E N +S Sbjct: 106 AARVVMEEAKKNPQS 120 >gi|1706951|gb|AAB38088.1| ATPase [Sulfolobus solfataricus] Length = 112 Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 29/50 (58%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQVEA + ++ + A +LFVGPPG GKT LA +A+ELG Sbjct: 39 LVGQVEAREASGIVVQLIRQGKMAGKGILFVGPPGTGKTALAVAIAKELG 88 >gi|297834500|ref|XP_002885132.1| EMB2083 [Arabidopsis lyrata subsp. lyrata] gi|297330972|gb|EFH61391.1| EMB2083 [Arabidopsis lyrata subsp. lyrata] Length = 874 Score = 42.7 bits (99), Expect = 0.072, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108 +L GPPG+GKT LA+ VA E GVNF S S + A + AL + V Sbjct: 444 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSV 503 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 504 VFIDEL 509 >gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar] gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar] Length = 355 Score = 42.7 bits (99), Expect = 0.072, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+ +EE Q E + LK IE A L ++LF GPPG GKT+ AREL Sbjct: 35 VEKYRPKCMEEVAFQEEVVAVLKKTIEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 89 >gi|148706232|gb|EDL38179.1| protease, serine, 15, isoform CRA_a [Mus musculus] Length = 515 Score = 42.7 bits (99), Expect = 0.072, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%) Query: 14 QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70 Q D ++ L R + + E+ G + + FI ++ R +L F GPPG+GKT++ Sbjct: 28 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 87 Query: 71 AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114 A+ +AR LG FR + G V A G + L + + L IDE+ Sbjct: 88 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 147 Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P LD + V ++LS+ I + + Sbjct: 148 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 200 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 201 PEPLRDRMEM-INVSGYVAQEKLAIAER 227 >gi|330930220|ref|XP_003302946.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1] gi|311321413|gb|EFQ88982.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1] Length = 744 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 27/52 (51%) Query: 37 CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 C +K + AK A VL GPPG GKT LA+ VA E NF S GP Sbjct: 499 CEPIKNPAKFAKFGISAPTGVLLWGPPGCGKTLLAKAVAAESKANFISVKGP 550 Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT + + A ELGV F GP + Sbjct: 207 ILLHGPPGCGKTVICRAFAAELGVPFIEILGPSV 240 >gi|284163322|ref|YP_003401601.1| Replication factor C [Haloterrigena turkmenica DSM 5511] gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511] Length = 330 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 87/218 (39%), Gaps = 40/218 (18%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP L+E G LK ++E + L +++F GP G GKTT A +ARE+ Sbjct: 20 IEKYRPERLDEIKGHENIVPRLKQYVER-----DELPNLMFAGPAGTGKTTAAVGIAREI 74 Query: 79 -GVNFRSTSGPVIA-----------KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 G ++R + A + D A ++F+DE L+ + L Sbjct: 75 YGDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYSHRIIFLDEADALTSDAQSALR 134 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI- 185 ME F N +RF L + + +P+Q R + F E+ Sbjct: 135 RTMEQFS----------------NNTRFIL--SCNYSSQIIDPIQSRCAV---FRFTELT 173 Query: 186 ED-LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 ED ++ V+ A G+ VTD+ + + G R A Sbjct: 174 EDAIEAQVREIAANEGIEVTDDGVDALVYAADGDMRKA 211 >gi|260814169|ref|XP_002601788.1| hypothetical protein BRAFLDRAFT_215307 [Branchiostoma floridae] gi|229287090|gb|EEN57800.1| hypothetical protein BRAFLDRAFT_215307 [Branchiostoma floridae] Length = 538 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL G PG GKT LA VVA+E G+NF S GP Sbjct: 339 VLLYGAPGTGKTLLAGVVAKECGMNFISIKGP 370 >gi|163742883|ref|ZP_02150267.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Phaeobacter gallaeciensis 2.10] gi|161383847|gb|EDQ08232.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Phaeobacter gallaeciensis 2.10] Length = 766 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 23/161 (14%) Query: 10 RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPG 64 +NVS++DA++ R+L+ GQ A L I+ A+A + + + LF GP G Sbjct: 442 KNVSKDDAEVLKDLERSLKRVVFGQDAAIDALSSAIKLARAGLREPEKPIGNYLFAGPTG 501 Query: 65 LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107 +GKT +A+ +A LGV R P D LLT+ D+ Sbjct: 502 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 561 Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 VL +DEI + V IL M++ QL G + R+V Sbjct: 562 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRTVNFRNV 602 >gi|157692413|ref|YP_001486875.1| stage V sporulation protein K [Bacillus pumilus SAFR-032] gi|194014788|ref|ZP_03053405.1| stage V sporulation protein K [Bacillus pumilus ATCC 7061] gi|157681171|gb|ABV62315.1| stage V sporulation protein K [Bacillus pumilus SAFR-032] gi|194013814|gb|EDW23379.1| stage V sporulation protein K [Bacillus pumilus ATCC 7061] Length = 319 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 122/304 (40%), Gaps = 69/304 (22%) Query: 3 DREGLLSRNVSQEDADISLLRP--RTLEEFTGQVEACSNLK-----VFI------EAAKA 49 D E + + +A S+LR R + G E N+K +F+ + K Sbjct: 28 DSEAEYLEALQKNEAKHSILREIEREMNSLVGMDEMKRNIKEIYAWIFVNQKRQEQGLKV 87 Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTSGPVIAKAGDLAALL---TNLED 105 +AL H++F G PG GKTT+A++V + +N S + A+ GDL T + Sbjct: 88 GKQAL-HMMFKGNPGTGKTTVARLVGKLFFEMNVLSKGHLIEAERGDLVGEYIGHTAQKT 146 Query: 106 RD--------VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKI 149 RD +LFIDE + L+ E + L MED Q + ++ ++ + Sbjct: 147 RDLIKKSLGGILFIDEAYSLARGGEKDFGKEAIDTLVKHMEDKQHEFILILAGYSKEMDH 206 Query: 150 NLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208 LS NP LQ RF I I Y ++ L I +R T EA Sbjct: 207 FLS--------------LNPGLQSRFPINISFPDYTVDQLMDIAKRMMADREYIFTQEAE 252 Query: 209 CEI-----AMRSRGTPR--IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 ++ ++S +P GR +R TI + I A+ L +D +D Sbjct: 253 WKLRDYLMHIKSTTSPAKFSNGRFVRN-----------TIEKAIRTQAMRLLLVDH--YD 299 Query: 262 QLDL 265 + DL Sbjct: 300 KKDL 303 >gi|116089322|ref|NP_083058.2| lon protease homolog, mitochondrial precursor [Mus musculus] gi|118573575|sp|Q8CGK3|LONM_MOUSE RecName: Full=Lon protease homolog, mitochondrial; AltName: Full=Lon protease-like protein; Short=LONP; AltName: Full=Mitochondrial ATP-dependent protease Lon; AltName: Full=Serine protease 15; Flags: Precursor gi|74213600|dbj|BAE35606.1| unnamed protein product [Mus musculus] gi|162317882|gb|AAI56651.1| Lon peptidase 1, mitochondrial [synthetic construct] Length = 949 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%) Query: 14 QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70 Q D ++ L R + + E+ G + + FI ++ R +L F GPPG+GKT++ Sbjct: 462 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 521 Query: 71 AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114 A+ +AR LG FR + G V A G + L + + L IDE+ Sbjct: 522 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 581 Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P LD + V ++LS+ I + + Sbjct: 582 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 634 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 635 PEPLRDRMEM-INVSGYVAQEKLAIAER 661 >gi|288920829|ref|ZP_06415127.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp. EUN1f] gi|288347788|gb|EFC82067.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp. EUN1f] Length = 431 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 35/133 (26%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFI---------------EAAKARAE-ALDHVLF 59 L +PR + EF GQ A L V + +AAK+ E A ++L Sbjct: 61 LPKPREIYEFLDGYVVGQEAAKKTLSVAVYNHYKRVQAGSSSSGDAAKSEVELAKSNILL 120 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108 +GP G GKT LAQ +AR L V F + +AG + + N+ D DV Sbjct: 121 LGPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180 Query: 109 ---LFIDEIHRLS 118 ++IDE+ +++ Sbjct: 181 TGIIYIDEVDKIA 193 >gi|264677388|ref|YP_003277294.1| ATP-dependent Clp protease ATP-binding subunit [Comamonas testosteroni CNB-2] gi|262207900|gb|ACY31998.1| ATP-dependent Clp protease, ATP-binding subunit [Comamonas testosteroni CNB-2] Length = 420 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCEYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 ERAQRGIVYIDEIDKIS 192 >gi|221068423|ref|ZP_03544528.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Comamonas testosteroni KF-1] gi|299533086|ref|ZP_07046472.1| ATP-dependent protease ATP-binding subunit ClpX [Comamonas testosteroni S44] gi|220713446|gb|EED68814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Comamonas testosteroni KF-1] gi|298718971|gb|EFI59942.1| ATP-dependent protease ATP-binding subunit ClpX [Comamonas testosteroni S44] Length = 420 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCEYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 ERAQRGIVYIDEIDKIS 192 >gi|94968586|ref|YP_590634.1| Lon-A peptidase [Candidatus Koribacter versatilis Ellin345] gi|94550636|gb|ABF40560.1| ATP-dependent proteinase [Candidatus Koribacter versatilis Ellin345] Length = 798 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 33/162 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L +A+ G F R + G V +A G + ++ Sbjct: 351 LCFVGPPGVGKTSLGMSIAKATGRKFVRMSLGGVRDEAEIRGHRRTYIGALPGQIIQMMK 410 Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R+ +F +DE+ ++S+ + E+L P +D + V+ +LS Sbjct: 411 KAGTRNPVFMLDEVDKMSMDFRGDPSSALLEVLDPEQNFMFVDHYL-------DVEYDLS 463 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + +A + + PLQDR I IRL+ Y ED K + R Sbjct: 464 QVFFVATANVLHTIPAPLQDRMEI-IRLHGY-TEDEKVEIGR 503 >gi|256053212|ref|XP_002570095.1| replication factor C / DNA polymerase III gamma-tau subunit [Schistosoma mansoni] gi|227287466|emb|CAY17767.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Schistosoma mansoni] Length = 362 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+T+ E Q E S L+ IE + L ++LF GPPG GKT+L +AR+L Sbjct: 32 RPKTVGEVAYQTEVVSVLQRCIEGSD-----LPNLLFYGPPGTGKTSLILALARQL 82 >gi|206896312|ref|YP_002247246.1| putative cell division protease FtsH [Coprothermobacter proteolyticus DSM 5265] gi|206738929|gb|ACI18007.1| putative cell division protease FtsH [Coprothermobacter proteolyticus DSM 5265] Length = 605 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG+GKT +A+ VA E GV F S SG + G AA + +L ++ + Sbjct: 201 VLLVGPPGVGKTLMAKAVAGEAGVPFFSVSGSEFVEMFVGVGAARVRDLFEQARKFAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 VFIDEI 266 >gi|168006313|ref|XP_001755854.1| predicted protein [Physcomitrella patens subsp. patens] gi|162693173|gb|EDQ79527.1| predicted protein [Physcomitrella patens subsp. patens] Length = 632 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 26/52 (50%) Query: 37 CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 C +K E E VL GPPG GKT +A+ +A E G NF S GP Sbjct: 365 CRAIKFPEEYQALGMEMATGVLLYGPPGCGKTLVAKAIANEAGANFISVKGP 416 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDV------ 108 VL GPPG GKT LA +A E GV F S P V +G+ A + +L V Sbjct: 88 VLLHGPPGCGKTMLANAIAVETGVPFLKISAPEVVSGMSGESEAKVRSLFAEAVKLAPCI 147 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 148 VFIDEIDAIT 157 >gi|115443244|ref|XP_001218429.1| activator 1 subunit 3 [Aspergillus terreus NIH2624] gi|114188298|gb|EAU29998.1| activator 1 subunit 3 [Aspergillus terreus NIH2624] Length = 398 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ +G + + + FIEA + L H+L GPPG GKT+ +AR++ Sbjct: 51 RPNTLDDVSGHQDILATINRFIEANR-----LPHLLLYGPPGTGKTSTILALARKI 101 >gi|74192936|dbj|BAE34972.1| unnamed protein product [Mus musculus] Length = 949 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%) Query: 14 QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70 Q D ++ L R + + E+ G + + FI ++ R +L F GPPG+GKT++ Sbjct: 462 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 521 Query: 71 AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114 A+ +AR LG FR + G V A G + L + + L IDE+ Sbjct: 522 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 581 Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P LD + V ++LS+ I + + Sbjct: 582 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 634 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 635 PEPLRDRMEM-INVSGYVAQEKLAIAER 661 >gi|9279712|dbj|BAB01269.1| cell division protein FtsH-like [Arabidopsis thaliana] Length = 976 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108 +L GPPG+GKT LA+ VA E GVNF S S + A + AL + V Sbjct: 546 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSV 605 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 606 VFIDEL 611 >gi|225436731|ref|XP_002269370.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 941 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 692 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 723 >gi|217077772|ref|YP_002335490.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus TCF52B] gi|217037627|gb|ACJ76149.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus TCF52B] Length = 480 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 37/229 (16%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ E GQ +++K + E +F GP G GKTT+A+++A+ L N Sbjct: 9 RPKLFSEVVGQ----NHVKTLFLNSLKNGEISHAYIFAGPRGTGKTTVARILAKSL--NC 62 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLF--------IDEIHRLS--------------II 120 + +G + + N DVL IDEI ++ I Sbjct: 63 ENKNGVEPCNKCNTCQSIDNGSFMDVLEIDAASNRGIDEIRKIRETVGYHAAQGNYKVYI 122 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 ++E+ E F L E P + V I ATT + + R + I Sbjct: 123 IDEVHMLTKEAFNALLKTLEEPPSNVV--------FILATTNPEKIPQTIISRCQV-IDF 173 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 IED+ ++ K + ++ EA EIA R+ G R A +L +V Sbjct: 174 KNLTIEDIIKRLEFVCKKENINISQEALNEIAKRANGGMRDALTILEQV 222 >gi|294659268|ref|XP_461623.2| DEHA2G01892p [Debaryomyces hansenii CBS767] gi|300681246|sp|Q6BJJ8|LONP2_DEBHA RecName: Full=Lon protease homolog 2, peroxisomal gi|199433831|emb|CAG90071.2| DEHA2G01892p [Debaryomyces hansenii] Length = 1147 Score = 42.7 bits (99), Expect = 0.075, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 38/168 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100 ++ VGPPG GKT+LA+ +A+ LG NF+ S I + + +L Sbjct: 647 IMLVGPPGTGKTSLAKSIAKSLGRNFQRVSLGGIKDESEIRGHRRTYVGAMPGVIIQSLR 706 Query: 101 TNLEDRDVLFIDEIHRL--------------SIIVEEILYPAMEDFQLDLMVGEGPSARS 146 + V+ +DEI ++ S + E+L P +D +G Sbjct: 707 KSRSMNPVILLDEIDKIIGGNNGVNKFNGDPSAALLEVLDPEQNTSFIDHYLG------- 759 Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++LS+ I L+ PL DR + I + Y+ ++ I +R Sbjct: 760 FPVDLSQVMFICTANEASNLSRPLLDRLEM-IEVGAYDYDEKLVIGER 806 >gi|54022793|ref|YP_117035.1| hypothetical protein nfa8260 [Nocardia farcinica IFM 10152] gi|54014301|dbj|BAD55671.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 613 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 58/136 (42%), Gaps = 32/136 (23%) Query: 10 RNVSQED--------ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL------- 54 RN ED A L R LE QV + L+ + AK RAE Sbjct: 300 RNADAEDRAKKILAEARAELDRQIGLESVKTQV---AKLQATAQLAKIRAEKGMASVPRG 356 Query: 55 DHVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTSGPVIAKAGDLAA------------LLT 101 +H+ F GPPG GKTT+A+VVA+ GV T V AK D L+ Sbjct: 357 NHLAFTGPPGTGKTTIARVVAKIYCGVGLLKTDKVVEAKRMDFVGQHLGSTAIKTDKLID 416 Query: 102 NLEDRDVLFIDEIHRL 117 + D VLFIDE + L Sbjct: 417 SAMD-GVLFIDEAYTL 431 >gi|19173766|ref|NP_596895.1| lon protease homolog, mitochondrial precursor [Rattus norvegicus] gi|81916424|sp|Q924S5|LONM_RAT RecName: Full=Lon protease homolog, mitochondrial; AltName: Full=Lon protease-like protein; Short=LONP; AltName: Full=Mitochondrial ATP-dependent protease Lon; AltName: Full=Serine protease 15; Flags: Precursor gi|15076622|dbj|BAB62423.1| Lon [Rattus norvegicus] gi|149028183|gb|EDL83621.1| protease, serine, 15 [Rattus norvegicus] Length = 950 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 35/208 (16%) Query: 14 QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70 Q D ++ L R +++ E+ G + + FI ++ R +L F GPPG+GKT++ Sbjct: 463 QSDENLDLARAQSVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 522 Query: 71 AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEI 114 A+ +AR LG FR + G V A G + L + + ++ IDE+ Sbjct: 523 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 582 Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P LD + V ++LS+ I + Sbjct: 583 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTI 635 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 636 PEPLRDRMEM-INVSGYVAQEKLAIAER 662 >gi|71656057|ref|XP_816581.1| vesicular transport protein (CDC48 homologue) [Trypanosoma cruzi strain CL Brener] gi|70881720|gb|EAN94730.1| vesicular transport protein (CDC48 homologue), putative [Trypanosoma cruzi] Length = 663 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Query: 53 ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 LDH VL GPPG GKT +A+ +A + G NF S GP Sbjct: 400 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 438 >gi|67471882|ref|XP_651853.1| ruvB-like DNA helicase [Entamoeba histolytica HM-1:IMSS] gi|56468632|gb|EAL46463.1| ruvB-like DNA helicase, putative [Entamoeba histolytica HM-1:IMSS] Length = 439 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--VNFRSTSG 87 GQ A L + +E KA+ A +L G PG GKT LAQ +A+ELG V FR+ G Sbjct: 39 LVGQENAREALGLIVEMVKAKRMAGRAILLAGAPGTGKTALAQALAKELGEHVPFRAMVG 98 >gi|298708657|emb|CBJ26144.1| conserved unknown protein [Ectocarpus siliculosus] Length = 966 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G NF S GP Sbjct: 696 VLLYGPPGCGKTLLAKAIANESGANFISVKGP 727 >gi|240103779|ref|YP_002960088.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus gammatolerans EJ3] gi|239911333|gb|ACS34224.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus gammatolerans EJ3] Length = 838 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 16/116 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G +A ++ +E E + VL GPPG GKT LA+ VA E Sbjct: 209 TYEDIGGLSDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 268 Query: 78 LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125 +F + +GP I G+ L + E+ ++FIDEI ++ EE++ Sbjct: 269 ANAHFIAINGPEIMSKFYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVV 324 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 18/75 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106 +L GPPG GKT LA+ VA E NF + GP + L+ + E R Sbjct: 583 ILLYGPPGTGKTLLAKAVANESEANFIAIRGPEV-----LSKWVGETEKRIREIFRKARQ 637 Query: 107 ---DVLFIDEIHRLS 118 V+FIDEI ++ Sbjct: 638 AAPTVVFIDEIDAIA 652 >gi|255559284|ref|XP_002520662.1| peroxisome assembly factor-2, putative [Ricinus communis] gi|223540047|gb|EEF41624.1| peroxisome assembly factor-2, putative [Ricinus communis] Length = 920 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 684 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 715 >gi|195977170|ref|YP_002122414.1| cell division protein FtsH-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195973875|gb|ACG61401.1| cell division protein FtsH-like [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 639 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 205 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 264 Query: 109 LFIDEI 114 +FIDEI Sbjct: 265 IFIDEI 270 >gi|108758871|ref|YP_630990.1| AAA family ATPase [Myxococcus xanthus DK 1622] gi|108462751|gb|ABF87936.1| ATPase, AAA family [Myxococcus xanthus DK 1622] Length = 711 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 26/46 (56%) Query: 45 EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 E A+A+ VL GPPG GKT +A+ A E VNF S GP + Sbjct: 484 EFARAKVRPPKGVLLSGPPGCGKTLMAKAAAHESQVNFISVKGPAL 529 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E F + +GP I G+ A L + D + Sbjct: 223 VLLYGPPGCGKTLIARAVAHETAAAFFTITGPEIMHKFYGESEAHLRQIFDEAQRRAPAI 282 Query: 109 LFIDEI 114 +F+DEI Sbjct: 283 IFVDEI 288 >gi|114567169|ref|YP_754323.1| endopeptidase La [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338104|gb|ABI68952.1| Endopeptidase La [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 566 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 8/108 (7%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 RN+ + SL RP +++ GQ EA S L+ + + HV+ GPPG+GKT Sbjct: 56 RNIKLSEPLSSLTRPAQMDDIIGQKEAVSILRSALCGPNPQ-----HVIIFGPPGVGKTA 110 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL--FIDEIH 115 A++V E N S G A ++ A ++ ++R++ I +H Sbjct: 111 AARLVLEEAKKNPLSPFGK-DANFVEVDATISRFDERNIADPLIGSVH 157 >gi|70985298|ref|XP_748155.1| DNA replication factor C subunit Rfc3 [Aspergillus fumigatus Af293] gi|66845783|gb|EAL86117.1| DNA replication factor C subunit Rfc3, putative [Aspergillus fumigatus Af293] gi|159125922|gb|EDP51038.1| DNA replication factor C subunit Rfc3, putative [Aspergillus fumigatus A1163] Length = 396 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ +G + + + FIEA + L H+L GPPG GKT+ +AR + Sbjct: 52 RPNTLDDVSGHQDILATINKFIEANR-----LPHLLLYGPPGTGKTSTILALARRI 102 >gi|163847597|ref|YP_001635641.1| ATP-dependent metalloprotease FtsH [Chloroflexus aurantiacus J-10-fl] gi|222525452|ref|YP_002569923.1| ATP-dependent metalloprotease FtsH [Chloroflexus sp. Y-400-fl] gi|163668886|gb|ABY35252.1| ATP-dependent metalloprotease FtsH [Chloroflexus aurantiacus J-10-fl] gi|222449331|gb|ACM53597.1| ATP-dependent metalloprotease FtsH [Chloroflexus sp. Y-400-fl] Length = 654 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78 T + GQ EA +L +E K + AL VL VGPPG GKT L++ VA E Sbjct: 167 TFADVAGQEEAKQDLAEIVEFLKFPDKFAALGARIPRGVLMVGPPGTGKTLLSRAVAGEA 226 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G A+ + +L D+ ++FIDEI Sbjct: 227 GVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEI 270 >gi|329923475|ref|ZP_08278956.1| ATP-dependent protease LonB [Paenibacillus sp. HGF5] gi|328941275|gb|EGG37570.1| ATP-dependent protease LonB [Paenibacillus sp. HGF5] Length = 576 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T+++ GQ + LK + +A + HV+ GPPG+GKT A+VV E N Sbjct: 64 RPQTMDDIVGQKDGLRALKAALCSANPQ-----HVIVYGPPGVGKTAAARVVMEEAKKNP 118 Query: 83 RS 84 +S Sbjct: 119 QS 120 >gi|328956579|ref|YP_004373965.1| ATP-dependent zinc metalloprotease FtsH [Carnobacterium sp. 17-4] gi|328672903|gb|AEB28949.1| ATP-dependent zinc metalloprotease FtsH [Carnobacterium sp. 17-4] Length = 721 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 39/223 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 226 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFENAKKTAPAI 285 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LI 157 +FIDEI + Q +G G R +N + F+ +I Sbjct: 286 IFIDEIDAVG-------------RQRGAGMGGGHDEREQTLNQLLVEMDGFSGNEGVIVI 332 Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 AAT R +L L RF I + +++ + I++ +K LA + ++A+ + Sbjct: 333 AATNRSDVLDPALLRPGRFDRQILVGHPDVKGREAILKVHSKNKPLA----SDVDLAVVA 388 Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258 R TP +G L V + A + A+ +EI DA L A D++ Sbjct: 389 RQTPGFSGADLENVLNEAALVAARRNKKEI-DALDLDEAQDRV 430 >gi|224044897|ref|XP_002194546.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 1279 Score = 42.7 bits (99), Expect = 0.076, Method: Composition-based stats. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL G PG GKT LA V+ARE G+NF S GP Sbjct: 873 VLLYGAPGTGKTLLAGVIARESGMNFISIKGP 904 >gi|171687307|ref|XP_001908594.1| hypothetical protein [Podospora anserina S mat+] gi|170943615|emb|CAP69267.1| unnamed protein product [Podospora anserina S mat+] Length = 1354 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A E +NF S GP Sbjct: 989 ILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1020 >gi|119953564|ref|YP_945774.1| cell division protein FtsH [Borrelia turicatae 91E135] gi|119862335|gb|AAX18103.1| cell division protein FtsH [Borrelia turicatae 91E135] Length = 635 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ EA L+ +E K + E + VL VG PG GKT LA+ VA E Sbjct: 171 TFKDVAGQEEAKQELREVVEFLKNPKKFEKIGARIPKGVLLVGSPGTGKTLLAKAVAGEA 230 Query: 79 GVNFRSTSG 87 GVNF SG Sbjct: 231 GVNFFHMSG 239 >gi|147780708|emb|CAN69109.1| hypothetical protein VITISV_025716 [Vitis vinifera] Length = 1241 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 1008 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 1039 >gi|148244364|ref|YP_001219058.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Vesicomyosocius okutanii HA] gi|146326191|dbj|BAF61334.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Vesicomyosocius okutanii HA] Length = 431 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L + F + +AG D+ ++ NL Sbjct: 119 NILMIGPTGSGKTLLAQTLARILDIPFTVADATTLTEAGYVGDDVENVVKNLLSKCDFDP 178 Query: 104 --EDRDVLFIDEIHRLS 118 R ++FIDEI ++S Sbjct: 179 DRAQRGIIFIDEIDKIS 195 >gi|70606665|ref|YP_255535.1| hypothetical protein Saci_0877 [Sulfolobus acidocaldarius DSM 639] gi|30088860|gb|AAP13476.1| AAA family ATPase [Sulfolobus acidocaldarius] gi|68567313|gb|AAY80242.1| hypothetical protein Saci_0877 [Sulfolobus acidocaldarius DSM 639] Length = 591 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 8/77 (10%) Query: 46 AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALL 100 A K + + +L GPPG GKT++A+ +A EL +F SG I+ KAG+L A Sbjct: 358 ANKLGIKPVKGILLYGPPGTGKTSIAKALANELQASFIVVSGDEISSVGPFKAGELIAEK 417 Query: 101 TNLEDRD---VLFIDEI 114 ++ + ++FIDEI Sbjct: 418 FHIAKDNSPSIIFIDEI 434 >gi|327274776|ref|XP_003222152.1| PREDICTED: peroxisome biogenesis factor 1-like [Anolis carolinensis] Length = 1276 Score = 42.7 bits (99), Expect = 0.077, Method: Composition-based stats. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L G PG GKT LA VVARE G+NF S GP Sbjct: 871 ILLYGAPGTGKTLLAGVVARESGMNFISIKGP 902 >gi|294463363|gb|ADE77215.1| unknown [Picea sitchensis] Length = 442 Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 23/127 (18%) Query: 20 SLLRPRTLE-------EFTGQVEACSNLKVFIEAAKARAEAL----DH----VLFVGPPG 64 S +R TLE + GQ E LK +E + A H VL GPPG Sbjct: 156 SAMREVTLEIPKVCWSDIGGQAEVKQQLKEAVEWPQKYQHAFLRIGTHPPRGVLMFGPPG 215 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHR 116 KT +A+ VA E G+NF + GP + G+ + +L + ++F DEI Sbjct: 216 CSKTIMARAVASEAGLNFLAVKGPELFSKWVGESEKAIQSLFAKARAAAPSIIFFDEIDG 275 Query: 117 LSIIVEE 123 L++ E Sbjct: 276 LAVAREH 282 >gi|254798632|ref|YP_003058284.1| cell division protein [Parachlorella kessleri] gi|229915580|gb|ACQ90923.1| cell division protein [Parachlorella kessleri] Length = 1481 Score = 42.7 bits (99), Expect = 0.077, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 8/101 (7%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---EDRD----VL 109 +L +GPPG GKT L Q +A E V SG + G+ A+ E R ++ Sbjct: 822 LLLIGPPGTGKTVLVQALAGEAQVPVLVLSGSSLISPGESGAVKLEFLFQEARQLAPCIV 881 Query: 110 FIDEIHRLSIIVEEILY-PAMEDFQLDLMVGEGPSARSVKI 149 FIDEI L++ ++++ P D L +V S R+ K+ Sbjct: 882 FIDEIDTLALKRQDVMQNPMGGDEVLSALVSFSSSKRNGKV 922 >gi|325968824|ref|YP_004245016.1| TBP-interacting protein TIP49 [Vulcanisaeta moutnovskia 768-28] gi|323708027|gb|ADY01514.1| TBP-interacting protein TIP49 [Vulcanisaeta moutnovskia 768-28] Length = 451 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQVEA ++ +A VL VGPPG GKT LA +ARELG Sbjct: 39 FVGQVEAREAAYYVVKMIRAGKFGGKGVLIVGPPGTGKTALAIGIARELG 88 >gi|304440585|ref|ZP_07400470.1| cell division protein FtsH [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370927|gb|EFM24548.1| cell division protein FtsH [Peptoniphilus duerdenii ATCC BAA-1640] Length = 593 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T + GQ EA LK ++ + + D L VGPPG GKT LAQ VA E Sbjct: 150 TFDNVEGQDEAKEALKELVDFLHSPKKYTDIGAKLPKGALLVGPPGTGKTLLAQAVAGEA 209 Query: 79 GVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 V F S SG + A + L +++ ++FIDEI Sbjct: 210 NVPFFSISGSEFVEMFVGLGAAKVRDLFKQAQEKAPCIVFIDEI 253 >gi|288929194|ref|ZP_06423039.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella sp. oral taxon 317 str. F0108] gi|288329296|gb|EFC67882.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella sp. oral taxon 317 str. F0108] Length = 753 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 22/148 (14%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARE 77 L R E GQ +A + I+ AKA + L +LFVGP G+GKT +A+V+A E Sbjct: 448 LEKRMKELIYGQNQAVELVTQAIQTAKAGLTEEGKPLAAMLFVGPTGVGKTEVARVLATE 507 Query: 78 LGVNF------RSTSGPVIAKAGDLAALLTNLED------------RDVLFIDEIHRLSI 119 LG+ T +AK A ED VL +DEI + Sbjct: 508 LGIELVRFDMSEYTEKHAVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCVLLLDEIEKAHA 567 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSV 147 + IL M+ +L G+ R+V Sbjct: 568 DIYNILLQVMDYARLTDNKGQKADFRNV 595 >gi|296086606|emb|CBI32241.3| unnamed protein product [Vitis vinifera] Length = 938 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 692 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 723 >gi|224131204|ref|XP_002321026.1| predicted protein [Populus trichocarpa] gi|222861799|gb|EEE99341.1| predicted protein [Populus trichocarpa] Length = 930 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 685 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 716 >gi|254172418|ref|ZP_04879093.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4] gi|214033347|gb|EEB74174.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4] Length = 838 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 16/116 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G +A ++ +E E + VL GPPG GKT LA+ VA E Sbjct: 209 TYEDIGGLSDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 268 Query: 78 LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125 +F + +GP I G+ L + E+ ++FIDEI ++ EE++ Sbjct: 269 ANAHFIAINGPEIMSKFYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVV 324 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 18/75 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106 +L GPPG GKT LA+ VA E NF + GP + L+ + E R Sbjct: 583 ILLYGPPGTGKTLLAKAVANESEANFIAIRGPEV-----LSKWVGETEKRIREIFRKARQ 637 Query: 107 ---DVLFIDEIHRLS 118 V+FIDEI ++ Sbjct: 638 AAPTVVFIDEIDAIA 652 >gi|85860155|ref|YP_462357.1| ATP-dependent protease La [Syntrophus aciditrophicus SB] gi|123517201|sp|Q2LVS9|LON_SYNAS RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|85723246|gb|ABC78189.1| ATP-dependent protease La [Syntrophus aciditrophicus SB] Length = 790 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 +Q++ DI R E+ G +A + ++ K + + +L FVGPPG GKT+LA Sbjct: 323 TQDNQDIRQARRILDEDHYGLDKAKKRIIEYLAVRKLKPDTKGPILCFVGPPGTGKTSLA 382 Query: 72 QVVARELGVNFRSTS 86 Q +AR LG F S Sbjct: 383 QSIARALGRKFYRIS 397 >gi|57640604|ref|YP_183082.1| cell division protein CDC48 [Thermococcus kodakarensis KOD1] gi|6513847|dbj|BAA87866.1| Pk-cdcA [Thermococcus kodakaraensis] gi|57158928|dbj|BAD84858.1| CDC48/VCP homolog, AAA superfamily [Thermococcus kodakarensis KOD1] Length = 835 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 16/116 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G +A ++ +E E + VL GPPG GKT LA+ VA E Sbjct: 207 TYEDIGGLSDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 266 Query: 78 LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125 +F + +GP I G+ L + E+ ++FIDEI ++ EE++ Sbjct: 267 ANAHFIAINGPEIMSKFYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVV 322 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 18/75 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106 +L GPPG GKT LA+ VA E NF + GP + L+ + E R Sbjct: 581 ILLYGPPGTGKTLLAKAVANESQANFIAIRGPEV-----LSKWVGETEKRIREIFRKARQ 635 Query: 107 ---DVLFIDEIHRLS 118 V+FIDEI ++ Sbjct: 636 AAPTVVFIDEIDAIA 650 >gi|328873528|gb|EGG21895.1| replication factor C subunit [Dictyostelium fasciculatum] Length = 1578 Score = 42.7 bits (99), Expect = 0.078, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEA--AKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +P T + G S+LK F+ R L+ VL GPPG+GKTT A ++ +E+G Sbjct: 1029 KPTTSSDIIGNPGMISHLKEFLMDFDKPLRKYKLNAVLIAGPPGIGKTTCASMILKEMGY 1088 Query: 81 NFRSTSGPVIAKAGDLAALLTNLED 105 + + D+ LL + D Sbjct: 1089 DVIEMNASDTRSKNDIDHLLGGVSD 1113 >gi|320164406|gb|EFW41305.1| katanin 60-PA [Capsaspora owczarzaki ATCC 30864] Length = 351 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E G F + S + GD L+ L D Sbjct: 105 VLMVGPPGTGKTMLAKAVATECGTTFFNVSASTLTSKYRGDSEKLVRLLFDMARFYAPST 164 Query: 109 LFIDEI 114 +FIDEI Sbjct: 165 IFIDEI 170 >gi|294055281|ref|YP_003548939.1| ATP-dependent metalloprotease FtsH [Coraliomargarita akajimensis DSM 45221] gi|293614614|gb|ADE54769.1| ATP-dependent metalloprotease FtsH [Coraliomargarita akajimensis DSM 45221] Length = 683 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 39/225 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E V F S SG + G AA + ++ ++ + Sbjct: 229 VLMVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGAARVRDMFEQGRKNAPCI 288 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LI 157 +FIDEI + Q +G G R +N + F +I Sbjct: 289 VFIDEIDAVG-------------RQRGAGLGGGNDEREQTLNSLLVEMDGFDGHEGVIII 335 Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 AAT R +L N L RF + ++ ++ I+Q AK +A+++E E + Sbjct: 336 AATNRPDVLDNALLRPGRFDRQVTIDLPDLNGRHEILQVHAK--KIALSEEVNLEHV--A 391 Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260 R TP +G L + + + A+ +++ D + A DK+ F Sbjct: 392 RNTPGFSGADLANLLNEGALIAAR-YNKKVVDMQDIDEARDKISF 435 >gi|196010307|ref|XP_002115018.1| hypothetical protein TRIADDRAFT_28707 [Trichoplax adhaerens] gi|190582401|gb|EDV22474.1| hypothetical protein TRIADDRAFT_28707 [Trichoplax adhaerens] Length = 315 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP+ L+E G + S L+VF A+ L +++ GPPG GKTT +AR+L Sbjct: 1 IEKYRPKQLDEVVGNEDTISRLEVF-----AKEGNLPNIVIAGPPGTGKTTSILCIARQL 55 >gi|120404041|ref|YP_953870.1| ATPase central domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119956859|gb|ABM13864.1| AAA ATPase, central domain protein [Mycobacterium vanbaalenii PYR-1] Length = 440 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 7/69 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDRD--VL 109 V+ GPPG GKT+ A+ VA LG F + P +A L + TNL + D V+ Sbjct: 215 VILFGPPGTGKTSFAKAVAGRLGWPFVEIFPSRLATPDVAMPTALREVFTNLNELDAAVV 274 Query: 110 FIDEIHRLS 118 FIDE+ ++ Sbjct: 275 FIDEVEEIA 283 >gi|42525081|ref|NP_970461.1| ATP-dependent protease ATP-binding subunit [Bdellovibrio bacteriovorus HD100] gi|61211515|sp|Q6MH12|CLPX_BDEBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|39577292|emb|CAE81115.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bdellovibrio bacteriovorus HD100] Length = 431 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 27/114 (23%) Query: 32 GQVEACSNLKVFIEAAKARAEALD-------------HVLFVGPPGLGKTTLAQVVAREL 78 GQ +A L V + R A+ ++L +GP G GKT LAQ +A+ L Sbjct: 77 GQTQAKKTLAVAVHNHYKRVNAMSGGKKSADVEMQKSNILLIGPTGSGKTLLAQTIAKVL 136 Query: 79 GVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------VLFIDEIHRLS 118 V F + +AG D+ ++ NL D D V+++DEI ++S Sbjct: 137 NVPFAMADATTLTEAGYVGEDVENVVLNLLQASDYDVEKAQKGVIYVDEIDKIS 190 >gi|322819429|gb|EFZ26555.1| vesicular transport-like protein, putative [Trypanosoma cruzi] Length = 660 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Query: 53 ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 LDH VL GPPG GKT +A+ +A + G NF S GP Sbjct: 397 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 435 >gi|313889508|ref|ZP_07823154.1| ATP-dependent metallopeptidase HflB [Streptococcus pseudoporcinus SPIN 20026] gi|313122120|gb|EFR45213.1| ATP-dependent metallopeptidase HflB [Streptococcus pseudoporcinus SPIN 20026] Length = 658 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|147676533|ref|YP_001210748.1| ATP-dependent Zn proteases [Pelotomaculum thermopropionicum SI] gi|146272630|dbj|BAF58379.1| ATP-dependent Zn proteases [Pelotomaculum thermopropionicum SI] Length = 609 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 47/95 (49%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE N K F E A+ VL GPPG GKT LA+ VA E GV F S SG Sbjct: 168 EELEEIVEFLKNPKKFQELG---AKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISG 224 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G A+ + +L D+ ++F+DEI Sbjct: 225 SDFVEMFVGVGASRVRDLFDQAKKNSPCIVFVDEI 259 >gi|50291931|ref|XP_448398.1| hypothetical protein [Candida glabrata CBS 138] gi|49527710|emb|CAG61359.1| unnamed protein product [Candida glabrata] Length = 359 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 18/197 (9%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108 VL GPPG GKT LA+ +A+E G NF S I K D L N + + Sbjct: 129 VLLYGPPGCGKTMLAKALAKESGANFISVRMSTIMDKWYGESNKIVDAMFSLANKLEPCI 188 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLLT 167 +FIDEI + + + + M + +G +N R +I AT R+ + Sbjct: 189 IFIDEIDSFLRERSSTDHEVTANLKAEFMTLWDG------LLNNGRVMIIGATNRINDID 242 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 + R ++ IE I++ L G D+A ++++ ++ + ++G L+ Sbjct: 243 DAFLRRLPKRFLVSLPNIEQRTKILEV---LLGNTELDKANFDLSLIAKCSGGLSGSDLK 299 Query: 228 RVRDFAEVAHAKTITRE 244 + A + AK +E Sbjct: 300 ELCREAALNAAKEAMKE 316 >gi|68476997|ref|XP_717476.1| hypothetical protein CaO19.8154 [Candida albicans SC5314] gi|46439189|gb|EAK98510.1| hypothetical protein CaO19.8154 [Candida albicans SC5314] Length = 969 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 74/189 (39%), Gaps = 38/189 (20%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-----------RSTSGP-- 88 FI K +L GPPG GKT++A+ +A L + G Sbjct: 420 FISVGKISGNVDGKILCLAGPPGTGKTSIAKSIAEALNRKYTRIAVGGVQDVHDVKGHRR 479 Query: 89 --VIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137 V + G + LT + + ++ IDEI +L EIL P + +D Sbjct: 480 TYVASIPGRIVTALTQAKTSNPLMLIDEIDKLDTTSHGGAARAFLEILDPEQNNSFVDNF 539 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194 + VK++LS+ + +G + PL+DR I I +N Y D I +R Sbjct: 540 I-------EVKVDLSKVLFVCTANYLGSIPGPLRDRMEI-IEVNGYTKNDKIEITKRHLI 591 Query: 195 --GAKLTGL 201 AK GL Sbjct: 592 PAAAKKVGL 600 >gi|319746206|gb|EFV98475.1| cell division protein FtsH [Streptococcus agalactiae ATCC 13813] Length = 658 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 283 Query: 109 LFIDEI 114 +FIDEI Sbjct: 284 IFIDEI 289 >gi|313215883|emb|CBY37301.1| unnamed protein product [Oikopleura dioica] Length = 626 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 32/157 (20%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVN-FRSTSGP------------ 88 FI ++ R +L F GPPG GKT++A+ +AR LG +R + G Sbjct: 268 FICTSQLRGSVQGKILCFHGPPGTGKTSIAKSIARSLGRKYYRFSVGGMSDVAEIKGHRR 327 Query: 89 --VIAKAGDLAALLTNLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137 V A G L L E + ++ IDEI +L S + E+L P LD Sbjct: 328 TYVGAMPGKLVQCLKKTESENPLILIDEIDKLGRGYQGDPSSALLELLDPEQNVGFLDHY 387 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174 + V I+LS+ I + ++ PL+DR Sbjct: 388 L-------DVPIDLSKALFICTANDLSTISGPLRDRM 417 >gi|238620900|ref|YP_002915726.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.4] gi|238381970|gb|ACR43058.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.4] Length = 585 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRD-V 108 +L GPPG GKT++A+ +A +L NF SG ++ AG L A L++ + Sbjct: 362 ILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSSAGPLDAPKIIAEKFYVALDNAPAI 421 Query: 109 LFIDEI 114 +FIDEI Sbjct: 422 IFIDEI 427 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAKA-GDLAALLTNLEDR------DV 108 V+ GPPG GKTT+A+ +A +LG F +++K G+ LL N D+ V Sbjct: 95 VILFGPPGTGKTTIAKALANKLGWAYFELRPSKILSKWYGESELLLDNFFDQVEMNTPAV 154 Query: 109 LFIDEIHRLSI 119 +FIDE+ L++ Sbjct: 155 VFIDELDSLAM 165 >gi|154270233|ref|XP_001535973.1| hypothetical protein HCAG_09086 [Ajellomyces capsulatus NAm1] gi|150410080|gb|EDN05468.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 447 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 11/110 (10%) Query: 25 RTLEEFT---GQVEA-CSNLKVFIEAAKARAEA----LDHVLFVGPPGLGKTTLAQVVAR 76 R+LE + GQ E C+++ F++A + A+ LF GPPG GKT+LAQ +A Sbjct: 209 RSLESISLAEGQKEEICNDMCKFLKAQRVYAKTERPYRRGYLFSGPPGTGKTSLAQALAG 268 Query: 77 ELGVNFR--STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 + G++ S +G + +L L ++L VL I++I+ I E++ Sbjct: 269 QYGLDIYMLSLTGQNMTDE-ELQWLCSHLPRCCVLLIEDINSARINCEKM 317 >gi|4587578|gb|AAD25809.1|AC006550_17 Belongs to PF|00004 ATPases associated with various cellular activities [Arabidopsis thaliana] Length = 983 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 736 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 767 >gi|112982853|ref|NP_001036917.1| replication factor C subunit 2 [Bombyx mori] gi|54290087|dbj|BAD61055.1| RFC40 [Bombyx mori] Length = 340 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77 I RP+T ++ G + S L VF + A +++ GPPG+GKTT +AR Sbjct: 24 IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNA-----PNIIIAGPPGVGKTTTILCLARVL 78 Query: 78 LGVNFR 83 LGV+F+ Sbjct: 79 LGVSFK 84 >gi|328870657|gb|EGG19030.1| replication factor C subunit [Dictyostelium fasciculatum] Length = 358 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +S RPRT+++ Q E LK ++ AL H+LF GPPG GKT+ +A +L Sbjct: 31 VSKYRPRTVDDVAHQDEVVRALKKSLDGG-----ALPHLLFYGPPGTGKTSTILAIAMDL 85 >gi|301154976|emb|CBW14439.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Haemophilus parainfluenzae T3T1] Length = 412 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N + Sbjct: 111 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDT 170 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 171 EKAEQGIIYIDEIDKIS 187 >gi|297741681|emb|CBI32813.3| unnamed protein product [Vitis vinifera] Length = 956 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 17/114 (14%) Query: 24 PRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 PR E+ GQ E + L +E + +A VL GPPG KT +A+ V Sbjct: 662 PRVKWEDVGGQNEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLLFGPPGCSKTLMARAV 721 Query: 75 ARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSII 120 A E G+NF + GP + G+ + +L + ++F DEI L++I Sbjct: 722 ASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVI 775 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT+LAQ+ + GVN S +G I G+ L + D V Sbjct: 437 VLLHGPPGTGKTSLAQLCICDAGVNLFSVNGAEIVSQYYGESEQALHEIFDSASQAAPAV 496 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 497 VFIDEL 502 >gi|268323248|emb|CBH36836.1| conserved hypothetical protein, AAA ATPase family and CDC48 family [uncultured archaeon] Length = 739 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108 VL GPPG GKT +A+ VA E NF S SGP I G+ L + ED + + Sbjct: 225 VLLQGPPGTGKTLIAKAVANETDANFYSISGPEIMSKFYGESERHLRQIFEDAEKSAPSI 284 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 285 IFIDELDSIA 294 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 19/32 (59%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT L + VA E NF S GP Sbjct: 497 VLLFGPPGTGKTMLVKAVANESDANFISIKGP 528 >gi|218290651|ref|ZP_03494742.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius LAA1] gi|218239316|gb|EED06514.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius LAA1] Length = 602 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNSPCI 253 Query: 109 LFIDEI 114 +FIDEI Sbjct: 254 IFIDEI 259 >gi|160943998|ref|ZP_02091228.1| hypothetical protein FAEPRAM212_01499 [Faecalibacterium prausnitzii M21/2] gi|158444674|gb|EDP21678.1| hypothetical protein FAEPRAM212_01499 [Faecalibacterium prausnitzii M21/2] Length = 714 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ A E GV F S SG V G A+ + +L D+ + Sbjct: 249 VLLVGPPGTGKTLLARACAGEAGVPFYSLSGSDFVEMYVGVGASRVRDLFDKAKKTMPCI 308 Query: 109 LFIDEI 114 +FIDEI Sbjct: 309 IFIDEI 314 >gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6] gi|226739142|sp|A9A6K6|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6] Length = 315 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL E G E L ++E +++ H+LF G PG+GKTT A +A++L Sbjct: 10 RPETLPEVVGHHEIIKRLTNYVEK-----KSMPHLLFSGSPGVGKTTAALALAKDL 60 >gi|154151966|ref|YP_001405584.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Methanoregula boonei 6A8] gi|154000518|gb|ABS56941.1| AAA family ATPase, CDC48 subfamily [Methanoregula boonei 6A8] Length = 805 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL--EDRD----V 108 VL GPPG GKT +A+ VA E G +F S +GP VI+K G+ L + E R+ + Sbjct: 222 VLLYGPPGTGKTLIAKAVASESGAHFISIAGPEVISKYYGESEQRLREVFEEARENSPSI 281 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ EE+ Sbjct: 282 IFIDELDSIAPRREEV 297 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E G NF GP Sbjct: 495 VLLFGPPGTGKTLIAKAVASESGANFIPVRGP 526 >gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5] gi|166225155|sp|A4FZ74|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5] Length = 315 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP TL E G E L ++E +++ H+LF G PG+GKTT A +A++L G Sbjct: 10 RPETLPEVVGHHEIIKRLTNYVEK-----KSMPHLLFSGSPGVGKTTAALALAKDLYGET 64 Query: 82 FRST 85 +R Sbjct: 65 WREN 68 >gi|20092335|ref|NP_618410.1| cell division control protein 48 AAA family protein [Methanosarcina acetivorans C2A] gi|19917582|gb|AAM06890.1| cell division control protein 48 AAA family protein [Methanosarcina acetivorans C2A] Length = 786 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT +AQ VA+E NF S GP Sbjct: 546 ILLYGPPGTGKTLIAQAVAKESNANFISVKGP 577 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G + ++ IE E H V+ GPPG GKT +A+ VA E Sbjct: 196 TYEDIGGLGQEIMRVREIIEMPMKHPELFAHLNIEPPKGVILYGPPGTGKTLIAKAVANE 255 Query: 78 LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLS 118 G +F +GP I G+ L + + V+FIDEI ++ Sbjct: 256 SGASFHYIAGPEIVGKFYGESEERLRKIFEEATQDAPSVIFIDEIDSIA 304 >gi|320582374|gb|EFW96591.1| Peroxisomal biogenesis factor 6 [Pichia angusta DL-1] Length = 1136 Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A +NF S GP Sbjct: 838 ELFSKGMKKRS----GILFYGPPGTGKTLLAKAIATNFALNFFSVKGP 881 >gi|256372377|ref|YP_003110201.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM 10331] gi|310943114|sp|C7M0M0|FTSH_ACIFD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|256008961|gb|ACU54528.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM 10331] Length = 660 Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 +L VGPPG GKT LA+ VA E GV F S SG + G AA + +L + + Sbjct: 209 ILLVGPPGTGKTLLARAVAGEAGVPFMSVSGSDFMEMFVGVGAARVRDLFQTARRQSPSI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 IFIDEI 274 >gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis IC-167] gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis IC-167] Length = 318 Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 24/178 (13%) Query: 54 LDHVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 L H+LF GPPG+GKTT A +AREL G ++RS+ + L D ID Sbjct: 31 LPHLLFYGPPGVGKTTAALALARELYGDSWRSS--------------VLELNASDERGID 76 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT-LIAATTRVGLLTN--- 168 I + F+L ++ + L R + A+TTR LL N Sbjct: 77 VIREKVKEFARTIPTGPVPFKLVILDEADNMTSDAQQALRRIMEMYASTTRFILLANYIS 136 Query: 169 ----PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 P+Q R I R N E + +++ AK TG+ VT++ I S+G R A Sbjct: 137 GIIEPIQSRCAI-FRFNPLPKEAVIERLRQIAKETGVEVTEDGLEAIWEVSQGDMRKA 193 >gi|119499175|ref|XP_001266345.1| DNA replication factor C subunit Rfc3, putative [Neosartorya fischeri NRRL 181] gi|119414509|gb|EAW24448.1| DNA replication factor C subunit Rfc3, putative [Neosartorya fischeri NRRL 181] Length = 396 Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ +G + + + FIEA + L H+L GPPG GKT+ +AR + Sbjct: 52 RPNTLDDVSGHQDILATINKFIEANR-----LPHLLLYGPPGTGKTSTILALARRI 102 >gi|38567232|emb|CAE76524.1| probable replication factor protein [Neurospora crassa] Length = 366 Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 35/246 (14%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+TL + T Q + L+ ++A+ L H+LF GPPG GKT+ +A+EL Sbjct: 35 VEKYRPKTLSDVTAQDHTITVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKEL 89 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE----IHRLSIIVEEILYPA---MED 131 GP + K+ L L ++R + + E R+ + Y A Sbjct: 90 -------YGPELIKSRVLE--LNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPP 140 Query: 132 FQL------DLMVGEGPSA--RSVKI--NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 F+L D M + SA R+++ ++RF LI V + +PL R R Sbjct: 141 FKLIILDEADSMTQDAQSALRRTMETYSKITRFCLIC--NYVTRIIDPLASRCS-KFRFK 197 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 + + K ++ A+L G+ + + A + S G R A L+ EV AK + Sbjct: 198 SLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLMEV-DAKLV 256 Query: 242 TREIAD 247 T ++ + Sbjct: 257 TVKVVE 262 >gi|47551109|ref|NP_999733.1| katanin p60 ATPase-containing subunit [Strongylocentrotus purpuratus] gi|60390159|sp|O61577|KTNA1_STRPU RecName: Full=Katanin p60 ATPase-containing subunit; Short=Katanin p60 subunit; AltName: Full=p60 katanin gi|3098603|gb|AAC15706.1| katanin p60 subunit [Strongylocentrotus purpuratus] Length = 516 Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 80/192 (41%), Gaps = 32/192 (16%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 270 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMARFYAPST 329 Query: 109 LFIDEIHRL-SIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGL- 165 +FIDEI + S + A + +L++ +G S S S+ ++ A T Sbjct: 330 IFIDEIDSICSKRGTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWD 389 Query: 166 ----LTNPLQDRFGIP----------IRLNFYEIE-----DLKTIVQRGAKLTGLAVTD- 205 L L+ R IP +R+N E+ DLK+I ++ +G +T+ Sbjct: 390 IDEALRRRLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNV 449 Query: 206 -EAACEIAMRSR 216 A +AMR R Sbjct: 450 CRDASMMAMRRR 461 >gi|77411319|ref|ZP_00787668.1| cell division protein FtsH [Streptococcus agalactiae CJB111] gi|77162655|gb|EAO73617.1| cell division protein FtsH [Streptococcus agalactiae CJB111] Length = 658 Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 283 Query: 109 LFIDEI 114 +FIDEI Sbjct: 284 IFIDEI 289 >gi|310778379|ref|YP_003966712.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ilyobacter polytropus DSM 2926] gi|309747702|gb|ADO82364.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ilyobacter polytropus DSM 2926] Length = 416 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 31/133 (23%) Query: 17 ADISLLRPR----TLEEFT-GQVEACSNLKVFIEAA------KARAEALD------HVLF 59 ++I+LL+P+ +L+E+ GQ A L V + K + E D +VL Sbjct: 60 SEINLLKPKEIKTSLDEYVIGQEHAKKVLAVSVYNHYKRILHKDKREESDVELQKSNVLL 119 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------ED 105 +GP G GKT LAQ +AR L V F + +AG D+ +L L + Sbjct: 120 IGPTGSGKTLLAQTLARTLHVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYDVDAAE 179 Query: 106 RDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 180 RGIIYIDEIDKIA 192 >gi|306834615|ref|ZP_07467727.1| cell division protein FtsH [Streptococcus bovis ATCC 700338] gi|304423251|gb|EFM26405.1| cell division protein FtsH [Streptococcus bovis ATCC 700338] Length = 660 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|296270180|ref|YP_003652812.1| shikimate kinase [Thermobispora bispora DSM 43833] gi|296092967|gb|ADG88919.1| Shikimate kinase [Thermobispora bispora DSM 43833] Length = 165 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 26/38 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 V+ +GPPG GKTT+ +++A LGV FR T V A AG Sbjct: 5 VVLIGPPGAGKTTVGRILADRLGVPFRDTDADVEAVAG 42 >gi|291542674|emb|CBL15784.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus bromii L2-63] Length = 446 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 30/146 (20%) Query: 3 DREGLLSRNVSQEDADIS---LLRPRT----LEEFT-GQVEACSNLKVFIEAAKARA--- 51 + E LS++ + ++S LL+P+ L+E+ GQ A L V + RA Sbjct: 53 ENENKLSKSGEPQTPELSVDELLKPKEIKTILDEYVIGQDHAKVTLSVAVYNHYKRAFSN 112 Query: 52 -EALD----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTN 102 E++D +VL +GP G+GKT LAQ +A+ L V F + +AG D+ +L Sbjct: 113 DESVDFAKSNVLLLGPTGVGKTLLAQTLAKALDVPFAIADATTLTEAGYVGEDVENILLK 172 Query: 103 L----------EDRDVLFIDEIHRLS 118 L + +++IDEI +++ Sbjct: 173 LIQAADFDIEKAEHGIIYIDEIDKIA 198 >gi|225867632|ref|YP_002743580.1| cell division protease FtsH [Streptococcus equi subsp. zooepidemicus] gi|225700908|emb|CAW97578.1| putative cell division protease FtsH [Streptococcus equi subsp. zooepidemicus] Length = 657 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|325191470|emb|CCA26243.1| peroxisome biogenesis factor putative [Albugo laibachii Nc14] Length = 1135 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK 92 +L GPPG GKT +A VA E G+NF S GP V++K Sbjct: 866 LLLFGPPGCGKTLIASAVAAECGLNFISVKGPEVLSK 902 >gi|256370652|ref|YP_003108477.1| N terminal region of DNA polymerase III subunit gamma [Candidatus Sulcia muelleri SMDSEM] gi|256009444|gb|ACU52804.1| N terminal region of DNA polymerase III, gamma subunit [Candidatus Sulcia muelleri SMDSEM] Length = 347 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 22/112 (19%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83 PR EE GQ LK IE K +++ LF GP G+GKTT A+++AR++ NF Sbjct: 12 PRDFEEVIGQKNITETLKKAIEK-KMLSKSF---LFCGPRGVGKTTCAKILARKVN-NFS 66 Query: 84 STSGPVIAKAGDLAALLTNLED-----------------RDVLFIDEIHRLS 118 + +L A N D V IDE+H LS Sbjct: 67 DEEKNSMFNIIELDAASNNSVDDIRNIINQVNFRPQYGKYKVYIIDEVHMLS 118 >gi|261379792|ref|ZP_05984365.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria subflava NJ9703] gi|284797477|gb|EFC52824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria subflava NJ9703] Length = 421 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 115 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|225869502|ref|YP_002745449.1| cell division protease FtsH [Streptococcus equi subsp. equi 4047] gi|225698906|emb|CAW91898.1| putative cell division protease FtsH [Streptococcus equi subsp. equi 4047] Length = 656 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 222 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 281 Query: 109 LFIDEI 114 +FIDEI Sbjct: 282 IFIDEI 287 >gi|114797075|ref|YP_759923.1| AAA family ATPase [Hyphomonas neptunium ATCC 15444] gi|114737249|gb|ABI75374.1| ATPase, AAA family [Hyphomonas neptunium ATCC 15444] Length = 318 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 26/168 (15%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106 HVL GPPG KT LAQ +R + + F R P + L L N + Sbjct: 40 HVLLEGPPGTAKTLLAQCFSRAISLQFGRIQFTPDLMPGDVLGTNLFNFQTNQFSLTKGP 99 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 D+L DEI+R + L AM++ ++ + S +N RFT+IA + Sbjct: 100 IFTDILLADEINRTPPKTQAALLEAMQERKVTI------DGESYPLN-PRFTVIATQNPI 152 Query: 164 GLL-TNPLQ----DRFGIPIRLNF-YEIEDLKTIVQRGAKLTGLAVTD 205 T PL DRF L + E+++ + Q G + TG+ + Sbjct: 153 EQQGTYPLPEAQLDRFLFKHTLEYPTREEEIRIVAQHGTR-TGMKTAE 199 >gi|110005106|emb|CAK99435.1| putative conserved aaa type atpase protein [Spiroplasma citri] Length = 411 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 29/212 (13%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +LRP T+ + GQ + I + + ++F G PG+GK+++A+ +A +L + Sbjct: 8 VLRPTTITDIIGQSHLINEQNGVI-SRMLKYNYASSLIFYGDPGVGKSSIARALANDLQL 66 Query: 81 NFRSTSGPVIAKAGDLAALL---TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 + + I K DL ++ N E R ++ ++E+HR++ ++IL +E+ L + Sbjct: 67 EY-AIFNAGINKKQDLEKIIKQAANFE-RFIIIVEEVHRMNKDRQDILLQYLENGHLIMF 124 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR-- 194 T + NP L+ R I I+L ++++ T +Q+ Sbjct: 125 A-------------------CTTENPYFVINPALRSRANI-IKLERITVDEMLTGLQKII 164 Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 K L +T++A I + G RIA +L Sbjct: 165 TKKKLPLTITNDALLLICQLASGDLRIAINIL 196 >gi|3377851|gb|AAC28233.1| contains similarity to ATPases associated with various cellular activities (Pfam: AAA.hmm, score: 155.05) [Arabidopsis thaliana] gi|7267174|emb|CAB77886.1| putative vesicle transfer ATPase [Arabidopsis thaliana] Length = 536 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 33/200 (16%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA--------GDLAALLTNLEDRD 107 VLF GPPG GKT+ A+V+A + G+ V++K G + + L D Sbjct: 291 VLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGAVFSQANELPDGA 350 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDF------QLDLMVGEGPSARSVKINLSRFTLIAATT 161 ++F+DEI +I + ++ A Q+D E + +IAAT Sbjct: 351 IIFLDEIDAFAISRDSEMHEATRRVLSVLLRQIDGFEQE-----------KKVVVIAATN 399 Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221 R L L RF I + +++ + I+ + AK + E+ ++ T + Sbjct: 400 RKQDLDPALISRFDSMIMFDLPDLQTRQEIIAQYAKQL-------SKPELVQLAQATEAM 452 Query: 222 AGRLLRRVRDFAEVAHAKTI 241 +GR +R V AE A I Sbjct: 453 SGRDIRDVCQGAERTWASKI 472 >gi|76787819|ref|YP_328742.1| cell division protein FtsH [Streptococcus agalactiae A909] gi|77405616|ref|ZP_00782705.1| cell division protein FtsH [Streptococcus agalactiae H36B] gi|76562876|gb|ABA45460.1| cell division protein FtsH [Streptococcus agalactiae A909] gi|77175760|gb|EAO78540.1| cell division protein FtsH [Streptococcus agalactiae H36B] Length = 658 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 283 Query: 109 LFIDEI 114 +FIDEI Sbjct: 284 IFIDEI 289 >gi|22536201|ref|NP_687052.1| cell division protein FtsH [Streptococcus agalactiae 2603V/R] gi|25010090|ref|NP_734485.1| cell division protein FtsH [Streptococcus agalactiae NEM316] gi|76797989|ref|ZP_00780248.1| cell division protein FtsH [Streptococcus agalactiae 18RS21] gi|77407696|ref|ZP_00784451.1| cell division protein FtsH [Streptococcus agalactiae COH1] gi|77414466|ref|ZP_00790616.1| cell division protein FtsH [Streptococcus agalactiae 515] gi|22533018|gb|AAM98924.1|AE014191_16 cell division protein FtsH [Streptococcus agalactiae 2603V/R] gi|23094441|emb|CAD45660.1| cell division protein FtsH [Streptococcus agalactiae NEM316] gi|76586669|gb|EAO63168.1| cell division protein FtsH [Streptococcus agalactiae 18RS21] gi|77159476|gb|EAO70637.1| cell division protein FtsH [Streptococcus agalactiae 515] gi|77173695|gb|EAO76809.1| cell division protein FtsH [Streptococcus agalactiae COH1] Length = 658 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 283 Query: 109 LFIDEI 114 +FIDEI Sbjct: 284 IFIDEI 289 >gi|328955416|ref|YP_004372749.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2] gi|328455740|gb|AEB06934.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2] Length = 651 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 50/106 (47%), Gaps = 19/106 (17%) Query: 26 TLEEFTGQVEACSNLKV---FIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77 T ++ GQ EA LK F+E K R E + L VGPPG GKT +A+ VA E Sbjct: 179 TFKDVAGQEEAKEALKEVVDFLENPK-RYEEIGAKLPRGALLVGPPGTGKTLMAKAVAGE 237 Query: 78 LGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEI 114 GV F S SG AK DL N + ++FIDEI Sbjct: 238 AGVPFFSISGSEFVEMFVGRGAAKVRDLFK-QANEKAPCIVFIDEI 282 >gi|319637747|ref|ZP_07992513.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria mucosa C102] gi|317400902|gb|EFV81557.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria mucosa C102] Length = 421 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 115 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|313206012|ref|YP_004045189.1| DNA polymerase iii, subunits gamma and tau [Riemerella anatipestifer DSM 15868] gi|312445328|gb|ADQ81683.1| DNA polymerase III, subunits gamma and tau [Riemerella anatipestifer DSM 15868] Length = 559 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 41/230 (17%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ + GQ S++ +E A A + +LF GP G+GKTT A+++AR++ Sbjct: 12 RPQEFDTVVGQ----SHITDTLEHAIAENQLAQALLFCGPRGVGKTTCARILARKINEKD 67 Query: 83 RSTSG--------PVIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVEEI 124 +TS + A + + + L D+ V IDE+H LS Sbjct: 68 GATSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHMLS------ 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 + F L E P A ++ I ATT + + R I Sbjct: 122 ----SQAFNAFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI-YDFKRIT 168 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 IED++ +++ A G++ D+A IA ++ G R A + R+ F + Sbjct: 169 IEDIQGHLRKIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFTQ 218 >gi|304405792|ref|ZP_07387450.1| ATP-dependent metalloprotease FtsH [Paenibacillus curdlanolyticus YK9] gi|304345035|gb|EFM10871.1| ATP-dependent metalloprotease FtsH [Paenibacillus curdlanolyticus YK9] Length = 671 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 202 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 261 Query: 109 LFIDEI 114 +FIDEI Sbjct: 262 IFIDEI 267 >gi|261334065|emb|CBH17059.1| vesicular transport protein (CDC48 homologue),putative [Trypanosoma brucei gambiense DAL972] Length = 706 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Query: 53 ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 LDH VL GPPG GKT +A+ +A + G NF S GP Sbjct: 443 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 481 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL GPPG GKT L ++ L V S P I +GD A L NL + Sbjct: 170 VLLHGPPGCGKTKLVHAISGSLQVPLFFVSAPEIVSGISGDSEAKLRNLFLDAISAAPSI 229 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 230 VFIDEV 235 >gi|290579539|ref|YP_003483931.1| putative cell division protein [Streptococcus mutans NN2025] gi|254996438|dbj|BAH87039.1| putative cell division protein [Streptococcus mutans NN2025] Length = 656 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 222 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 281 Query: 109 LFIDEI 114 +FIDEI Sbjct: 282 IFIDEI 287 >gi|258510218|ref|YP_003183652.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476944|gb|ACV57263.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 602 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNSPCI 253 Query: 109 LFIDEI 114 +FIDEI Sbjct: 254 IFIDEI 259 >gi|145353045|ref|XP_001420841.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581076|gb|ABO99134.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 334 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ G +A ++ + R+ + +++F GPPG GKT+ V+AREL Sbjct: 8 RPKTLDDLVGNDDAVDRMRTMV-----RSGFMPNLIFSGPPGCGKTSAIGVLAREL 58 >gi|156740727|ref|YP_001430856.1| ATP-dependent metalloprotease FtsH [Roseiflexus castenholzii DSM 13941] gi|156232055|gb|ABU56838.1| ATP-dependent metalloprotease FtsH [Roseiflexus castenholzii DSM 13941] Length = 638 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78 T + GQ EA +L +E K + AL VL VGPPG GKT L++ VA E Sbjct: 162 TFADVAGQEEAKQDLTEVVEFLKFPDKFAALGARIPRGVLMVGPPGTGKTLLSRAVAGEA 221 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G A+ + +L D+ ++FIDEI Sbjct: 222 GVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEI 265 >gi|148658441|ref|YP_001278646.1| ATP-dependent metalloprotease FtsH [Roseiflexus sp. RS-1] gi|148570551|gb|ABQ92696.1| ATP-dependent metalloprotease FtsH [Roseiflexus sp. RS-1] Length = 640 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78 T + GQ EA +L +E K + AL VL VGPPG GKT L++ VA E Sbjct: 162 TFADVAGQEEAKQDLTEVVEFLKFPDKFAALGARIPRGVLMVGPPGTGKTLLSRAVAGEA 221 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G A+ + +L D+ ++FIDEI Sbjct: 222 GVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEI 265 >gi|71902680|ref|YP_279483.1| cell division protein [Streptococcus pyogenes MGAS6180] gi|71801775|gb|AAX71128.1| cell division protein [Streptococcus pyogenes MGAS6180] Length = 659 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|22329309|ref|NP_171799.2| PEX6 (PEROXIN 6); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|75330784|sp|Q8RY16|PEX6_ARATH RecName: Full=Peroxisome biogenesis protein 6; AltName: Full=Peroxin-6; Short=AtPEX6 gi|19310449|gb|AAL84960.1| At1g03000/F22D16.27 [Arabidopsis thaliana] gi|24797060|gb|AAN64542.1| At1g03000/F22D16.27 [Arabidopsis thaliana] gi|37223130|gb|AAQ90161.1| AAA family ATPase peroxin 6 [Arabidopsis thaliana] gi|332189392|gb|AEE27513.1| peroxin 6 [Arabidopsis thaliana] Length = 941 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 694 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 725 >gi|227828708|ref|YP_002830488.1| ATPase AAA [Sulfolobus islandicus M.14.25] gi|229585926|ref|YP_002844428.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.27] gi|227460504|gb|ACP39190.1| AAA ATPase central domain protein [Sulfolobus islandicus M.14.25] gi|228020976|gb|ACP56383.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.27] gi|323475914|gb|ADX86520.1| AAA ATPase central domain protein [Sulfolobus islandicus REY15A] gi|323478510|gb|ADX83748.1| AAA ATPase central domain protein [Sulfolobus islandicus HVE10/4] Length = 585 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRD-V 108 +L GPPG GKT++A+ +A +L NF SG ++ AG L A L++ + Sbjct: 362 ILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSSAGPLDAPKIIAEKFYVALDNAPAI 421 Query: 109 LFIDEI 114 +FIDEI Sbjct: 422 IFIDEI 427 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAKA-GDLAALLTNLEDR------DV 108 V+ GPPG GKTT+A+ +A +LG F +++K G+ LL N D+ V Sbjct: 95 VILFGPPGTGKTTIAKALANKLGWAYFELRPSKILSKWYGESELLLDNFFDQVEMNTPAV 154 Query: 109 LFIDEIHRLSI 119 +FIDE+ L++ Sbjct: 155 VFIDELDSLAM 165 >gi|262199085|ref|YP_003270294.1| ATP-dependent protease La [Haliangium ochraceum DSM 14365] gi|262082432|gb|ACY18401.1| ATP-dependent protease La [Haliangium ochraceum DSM 14365] Length = 803 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 100/236 (42%), Gaps = 50/236 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+L + VA LG + R+ G V +A G +A L Sbjct: 351 LCLVGPPGVGKTSLGRSVATALGRKYVRTALGGVRDEAEIRGHRRTYIGALPGRIAGALK 410 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + V+ +DE+ +L S + E+L P D + + ++LS Sbjct: 411 KAGAMNPVMVLDELDKLGSDHRGDPSSALLEVLDPEQNSTFSDHYL-------EIDLDLS 463 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----------KTIVQRGAKLTGLA 202 R IA + + PL DR I IR+ Y +E+ K I + G L Sbjct: 464 RVMFIATANQTETIPAPLLDRLEI-IRIPGYTLEEKRVIARKHLLPKQIAEHGLGRDQLR 522 Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTITREIADAALLRLAIDK 257 V DEA E+ R AG +R + R+ A V + E+A A++ L++DK Sbjct: 523 VDDEALDELIG---SYTREAG--VRNLEREIAAVCRHAAV--EVASASVSELSVDK 571 >gi|254486673|ref|ZP_05099878.1| putative Cell division protease FtsH family protein [Roseobacter sp. GAI101] gi|214043542|gb|EEB84180.1| putative Cell division protease FtsH family protein [Roseobacter sp. GAI101] Length = 686 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 9/77 (11%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---- 106 +E VL GPPG GKT LAQ +A G+ +TS + KAG L L + Sbjct: 292 SEVTSSVLLYGPPGTGKTLLAQALAGSAGIPLIATSYGICQKAGHQGDFLRTLSESVEKT 351 Query: 107 -----DVLFIDEIHRLS 118 V F+DE+ S Sbjct: 352 IASAPCVFFVDELDSFS 368 >gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980] gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980 UF-70] Length = 390 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TLE+ +G + + + F++ + L H+LF GPPG GKT+ +AR + Sbjct: 52 RPDTLEDVSGHQDILATINKFVDTNR-----LPHLLFYGPPGTGKTSTILALARRI 102 >gi|51701862|sp|Q9UVU5|PEX6_PICAN RecName: Full=Peroxisomal biogenesis factor 6; AltName: Full=Peroxin-6 gi|5817538|gb|AAD52812.1|AF129874_1 peroxin-6 [Pichia angusta] Length = 1135 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ +LF GPPG GKT LA+ +A +NF S GP Sbjct: 837 ELFSKGMKKRS----GILFYGPPGTGKTLLAKAIATNFALNFFSVKGP 880 >gi|332977179|gb|EGK13978.1| replication-associated recombination protein A [Psychrobacter sp. 1501(2011)] Length = 438 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 74/281 (26%), Positives = 116/281 (41%), Gaps = 53/281 (18%) Query: 9 SRNVSQEDADISL-LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPG 64 S N+ D ++ +RP+TLEE GQ S ++ F++ L ++ G G Sbjct: 5 STNLPYSDTPLAQRMRPKTLEEVIGQNHLLSPGTPIRSFVDHGH-----LPSLILHGEAG 59 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT--------NLE-DRDVLFIDEIH 115 +GKTT+A ++A +G F S + L +L LE V+FIDEIH Sbjct: 60 IGKTTIAMLLADAVGRPFYPLSA-INTGVKQLREVLDAGSKPGQGGLEFAAPVVFIDEIH 118 Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDR 173 R + ++ L A+E GE TLI ATT + N L R Sbjct: 119 RFNKAQQDALLGAVES-------GE-------------ITLIGATTENPSFSVNNALLSR 158 Query: 174 FGIPIRLNFYEIEDLKTIVQRGAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 + RL E ++ ++QR L+ L + EA +IA ++G R + LL Sbjct: 159 CQV-YRLEPLTEEQIEQLLQRAISEDEFLSKLDIQLEATPQIAKLAQGDARKSLNLLELA 217 Query: 230 RDFAEVAHAKTITRE-----IADAALLRLAIDKMGFDQLDL 265 ++ + + + +A AL R DK G D+ Sbjct: 218 VQASDHSQQPIVINDALLSSVAQTALQRY--DKDGDQHYDI 256 >gi|332522221|ref|ZP_08398473.1| ATP-dependent metallopeptidase HflB [Streptococcus porcinus str. Jelinkova 176] gi|332313485|gb|EGJ26470.1| ATP-dependent metallopeptidase HflB [Streptococcus porcinus str. Jelinkova 176] Length = 658 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|241760359|ref|ZP_04758454.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria flavescens SK114] gi|241319237|gb|EER55715.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria flavescens SK114] Length = 421 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 115 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|222152216|ref|YP_002561391.1| cell division protease FtsH [Streptococcus uberis 0140J] gi|222113027|emb|CAR40340.1| putative cell division protease FtsH [Streptococcus uberis 0140J] Length = 655 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 222 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 281 Query: 109 LFIDEI 114 +FIDEI Sbjct: 282 IFIDEI 287 >gi|219851454|ref|YP_002465886.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris E1-9c] gi|219545713|gb|ACL16163.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris E1-9c] Length = 806 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDR--DV 108 VL GPPG GKT +A+ VA E+ +F + SGP +I+K G+L + + + Sbjct: 224 VLLYGPPGTGKTLIAKAVANEVDAHFITLSGPEIISKYYGESEGNLRQVFEEAQQNAPTI 283 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 284 IFIDEIDSIA 293 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 22/41 (53%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 K A +L GPPG GKT LA+ VA E NF S GP Sbjct: 487 KLETSAPKGILLFGPPGTGKTMLAKAVANESQCNFISVKGP 527 >gi|218884381|ref|YP_002428763.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus kamchatkensis 1221n] gi|218765997|gb|ACL11396.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus kamchatkensis 1221n] Length = 729 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E G NF + GP I Sbjct: 491 VLLYGPPGCGKTLLAKAVATESGANFIAVKGPEI 524 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ +A E+ F + +GP I Sbjct: 211 ILLYGPPGTGKTLLAKALANEVNAYFVTINGPEI 244 >gi|94987644|ref|YP_595745.1| cell division protein [Streptococcus pyogenes MGAS9429] gi|94541152|gb|ABF31201.1| cell division protein [Streptococcus pyogenes MGAS9429] Length = 659 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|71754681|ref|XP_828255.1| vesicular transport protein [Trypanosoma brucei TREU927] gi|70833641|gb|EAN79143.1| vesicular transport protein (CDC48 homologue), putative [Trypanosoma brucei] Length = 706 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Query: 53 ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 LDH VL GPPG GKT +A+ +A + G NF S GP Sbjct: 443 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 481 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL GPPG GKT L ++ L V S P I +GD A L NL + Sbjct: 170 VLLHGPPGCGKTKLVHAISGSLQVPLFFVSAPEIVSGISGDSEAKLRNLFLDAISAAPSI 229 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 230 VFIDEV 235 >gi|163801289|ref|ZP_02195188.1| hypothetical protein 1103602000598_AND4_10489 [Vibrio sp. AND4] gi|159174778|gb|EDP59578.1| hypothetical protein AND4_10489 [Vibrio sp. AND4] Length = 1620 Score = 42.7 bits (99), Expect = 0.085, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 K R + + +L + PPG GKTTL + VA +LG+ F +GP I Sbjct: 1253 KKRTDLMGMLLLISPPGYGKTTLIEYVAHKLGLVFMKINGPSIG 1296 >gi|124006624|ref|ZP_01691456.1| spore formation protein [Microscilla marina ATCC 23134] gi|123987779|gb|EAY27470.1| spore formation protein [Microscilla marina ATCC 23134] Length = 433 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 92/213 (43%), Gaps = 40/213 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD----- 107 H++F+G PG GKT +A+++A +E+G+ S V A+ DL + Sbjct: 212 HLVFMGNPGTGKTEVARLIAEIFQEIGL--LSRGHLVEARRSDLVEKYVGHTAKKVEEVV 269 Query: 108 ------VLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR 153 VLFIDE + L+ + L P ME+++ +L+V A ++ R Sbjct: 270 MNALGGVLFIDEAYALTNGGTQDFGPEAIDTLTPLMENYRENLIV----IAAGYTKDMER 325 Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA---ACE 210 F +AA L RF I + Y +++L I ++ G +TD A A + Sbjct: 326 F--LAA-------NQGLSSRFSEVIHFDDYNLDELTQIFEKMCHDRGYELTDAAKLHARK 376 Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 + M+S GT R VR+ E + K R Sbjct: 377 LIMKSFGTDAAKFGNGRGVRNLFEKVYMKQADR 409 >gi|85067857|gb|ABC69312.1| mitochondrial Lon protease [Pichia angusta] Length = 1098 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 34/160 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 + FVGPPG+GKT++ + +AR L F S V A G + L Sbjct: 580 ICFVGPPGVGKTSIGKSIARALNRKFYRFSVGGLTDVAEIKGHRRTYVGAIPGRMVQALK 639 Query: 102 NLEDRDVL-FIDEIHRLSIIVE-----------EILYPAMEDFQLDLMVGEGPSARSVKI 149 N E + L IDEI ++S E+L P +D + V I Sbjct: 640 NTETENPLVLIDEIDKISHTHHGSGGDPSAALLELLDPEQNGTFMDYYM-------DVPI 692 Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 NLSR + + + PL DR + + E E +K Sbjct: 693 NLSRVLFVCTANTLSTIPAPLLDRMEVIEIAGYVEDEKIK 732 >gi|15674261|ref|NP_268434.1| putative cell division protein [Streptococcus pyogenes M1 GAS] gi|71909827|ref|YP_281377.1| cell division protein [Streptococcus pyogenes MGAS5005] gi|13621337|gb|AAK33156.1| putative cell division protein [Streptococcus pyogenes M1 GAS] gi|71852609|gb|AAZ50632.1| cell division protein [Streptococcus pyogenes MGAS5005] Length = 659 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|327313952|ref|YP_004329389.1| ATP-dependent metallopeptidase HflB [Prevotella denticola F0289] gi|326944304|gb|AEA20189.1| ATP-dependent metallopeptidase HflB [Prevotella denticola F0289] Length = 665 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 51/264 (19%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ A ++ +E K + D L +GPPG GKT LA+ VA E Sbjct: 179 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLIGPPGTGKTLLAKAVAGEA 238 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130 GV F S SG V A + + +++ ++FIDEI + + PAM Sbjct: 239 GVPFFSMSGSDFVEMFVGVGASRVRDVFRQAKEKSPCIIFIDEIDAVGRARSK--NPAM- 295 Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177 G R +N S ++AAT RV +L L RF Sbjct: 296 ---------GGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQ 346 Query: 178 IRLNFYEIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 I ++ ++ + K I R KL E +I + +R TP +G + V + A Sbjct: 347 IHVDLPDLTERKAIFLVHMRPLKL-------EKNLDIDLLARQTPGFSGADIANVCNEAA 399 Query: 235 VAHAKTITREIADAALLRLAIDKM 258 + A+ +++++ L A+D++ Sbjct: 400 LIAARHNSKDVSKQDFLD-AVDRI 422 >gi|288904238|ref|YP_003429459.1| cell-division protein FtsH [Streptococcus gallolyticus UCN34] gi|306832498|ref|ZP_07465650.1| cell division protein FtsH [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977215|ref|YP_004286931.1| cell division protein FtsH [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288730963|emb|CBI12507.1| cell-division protein FtsH [Streptococcus gallolyticus UCN34] gi|304425398|gb|EFM28518.1| cell division protein FtsH [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177143|emb|CBZ47187.1| cell division protein FtsH [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 660 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|171778210|ref|ZP_02919439.1| hypothetical protein STRINF_00278 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283034|gb|EDT48458.1| hypothetical protein STRINF_00278 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 657 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|124360532|gb|ABN08542.1| AAA ATPase, central region; L-lactate dehydrogenase [Medicago truncatula] Length = 924 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 678 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 709 >gi|21592745|gb|AAM64694.1| cell division protein FtsH-like protein [Arabidopsis thaliana] Length = 622 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 8/89 (8%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 VE S L+ I K A VL VGPPG GKT LA+ VA E GV F S S + Sbjct: 347 VEIVSCLQGSINYKKLGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL 406 Query: 93 -AGDLAALLTNL------EDRDVLFIDEI 114 G AA + +L ++FIDE+ Sbjct: 407 FVGRGAARIRDLFNAARKNSPSIIFIDEL 435 >gi|325577259|ref|ZP_08147743.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus parainfluenzae ATCC 33392] gi|325160841|gb|EGC72962.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus parainfluenzae ATCC 33392] Length = 412 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N + Sbjct: 111 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDT 170 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 171 EKAEQGIIYIDEIDKIS 187 >gi|322412929|gb|EFY03836.1| cell division protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 661 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|313836729|gb|EFS74443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL037PA2] gi|314929865|gb|EFS93696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL044PA1] gi|314972292|gb|EFT16389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL037PA3] gi|328907722|gb|EGG27486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium sp. P08] Length = 430 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 37/135 (27%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE-ALD-----------------HV 57 L RPR L +F GQ EA L V + R + A+D ++ Sbjct: 62 LPRPRELCDFLDAWVIGQEEAKRTLSVAVYNHYKRIQSAVDVPHARRAEDDGVELGKSNI 121 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103 L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 122 LLLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181 Query: 104 EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 182 AERGIVYIDEIDKVA 196 >gi|302795442|ref|XP_002979484.1| hypothetical protein SELMODRAFT_111106 [Selaginella moellendorffii] gi|300152732|gb|EFJ19373.1| hypothetical protein SELMODRAFT_111106 [Selaginella moellendorffii] Length = 788 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA + NF S GP + G+ + + D+ V Sbjct: 509 VLFYGPPGCGKTLLAKAVATMIHCNFISIKGPELLSKYLGESEGNVREVFDKARASAPCV 568 Query: 109 LFIDEIHRLSI 119 LF DE+ ++I Sbjct: 569 LFFDELDSIAI 579 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 236 ILLFGPPGTGKTMIARAVANETGAFFTVINGPEI 269 >gi|297562256|ref|YP_003681230.1| ATPase AAA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846704|gb|ADH68724.1| AAA ATPase central domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 823 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 80/181 (44%), Gaps = 44/181 (24%) Query: 54 LDHVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKAGDL-------AALLTN- 102 + H +F GPPG GKTT+A+V+ R LG+ R+ V A+ DL A+ TN Sbjct: 589 MRHFVFSGPPGTGKTTVARVLGRVFAALGLLGRADV--VEAQRADLVGEHLGATAVKTNR 646 Query: 103 LEDR---DVLFIDEIHRL------------SIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 L DR VLF+DE + L S ++ +L A +D ++V G A Sbjct: 647 LVDRALGGVLFVDEAYSLVNPGYSGGDAFGSEAIQTLLKRAEDDRSRLVVVLAGYPA--- 703 Query: 148 KINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 + RF L +N L RF + +R Y ++L I + A TG A D Sbjct: 704 --EMERF----------LASNAGLSSRFNVRVRFPSYTADELTEIAETVAARTGDAFDDT 751 Query: 207 A 207 A Sbjct: 752 A 752 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 41/97 (42%), Positives = 50/97 (51%), Gaps = 27/97 (27%) Query: 44 IEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVARELGVNFRS-----TSGPVIA 91 IEAA+ RA+A L H++F GPPG GKT+ VAR L F S TS V A Sbjct: 277 IEAARLRADAGFPVERPLRHLVFSGPPGTGKTS----VARTLATIFHSFGLLPTSRVVEA 332 Query: 92 KAGDL-------AALLTN-LEDR---DVLFIDEIHRL 117 + DL A+ TN L DR VLF+DE + L Sbjct: 333 QRADLVGEYLGATAIRTNELIDRALGGVLFVDEAYSL 369 >gi|227831447|ref|YP_002833227.1| AAA ATPase central domain protein [Sulfolobus islandicus L.S.2.15] gi|227457895|gb|ACP36582.1| AAA ATPase central domain protein [Sulfolobus islandicus L.S.2.15] Length = 585 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRD-V 108 +L GPPG GKT++A+ +A +L NF SG ++ AG L A L++ + Sbjct: 362 ILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSSAGPLDAPKIIAEKFYVALDNAPAI 421 Query: 109 LFIDEI 114 +FIDEI Sbjct: 422 IFIDEI 427 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAKA-GDLAALLTNLEDR------DV 108 V+ GPPG GKTT+A+ +A +LG V F +++K G+ LL N D+ V Sbjct: 95 VILFGPPGTGKTTIAKALANKLGWVYFELRPSKILSKWYGESELLLDNFFDQVEMNTPAV 154 Query: 109 LFIDEIHRLSI 119 +FIDE+ L++ Sbjct: 155 VFIDELDSLAM 165 >gi|254520640|ref|ZP_05132696.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA] gi|226914389|gb|EEH99590.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA] Length = 638 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 15/107 (14%) Query: 26 TLEEFTGQVEACSNLKVFIE----AAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ EA +LK I+ A+K A+ L VGPPG GKT LA+ VA E Sbjct: 170 TFDDVAGQDEAKESLKEIIDYLNNASKYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 229 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRL 117 V F S SG + AG AA + +L ++FIDE+ + Sbjct: 230 NVPFLSISGSNFVEMFAGMGAAKVRDLFQEAEKNAPCIIFIDEVDSI 276 >gi|254519653|ref|ZP_05131709.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226913402|gb|EEH98603.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 891 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 78/188 (41%), Gaps = 46/188 (24%) Query: 14 QEDADISLLRPRTLEE----------FTGQVEACSNLKVFIEAAKARAEALDH---VLFV 60 QED I+ ++ + E+ F V +L+V +E AKA H VL + Sbjct: 98 QEDDYINAIKDKKTEDIKDFHEQKDFFKEVVGYNGSLRVQVEQAKAAVSYPPHGLHVLIL 157 Query: 61 GPPGLGKTTLAQVVAR--ELGVNFRSTSGPVIAKAGDLAA----LLTNL----------- 103 GP G+GK+ LA + + NF + +I D A LL+ L Sbjct: 158 GPSGVGKSYLADAMYEFAKSTSNFSEDAKYIIFNCADYADNPQLLLSQLFGSVKGAYTGA 217 Query: 104 ----------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR 153 D +LF+DEIHRL +EIL+ + D + +GE + R S Sbjct: 218 TENKMGIVEACDGGILFLDEIHRLPSEGQEILFSIL-DKGIFRRLGESETVRK-----SN 271 Query: 154 FTLIAATT 161 +IAATT Sbjct: 272 VMIIAATT 279 >gi|225075808|ref|ZP_03719007.1| hypothetical protein NEIFLAOT_00824 [Neisseria flavescens NRL30031/H210] gi|224952841|gb|EEG34050.1| hypothetical protein NEIFLAOT_00824 [Neisseria flavescens NRL30031/H210] Length = 421 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 115 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|255550758|ref|XP_002516427.1| Protein YME1, putative [Ricinus communis] gi|223544247|gb|EEF45768.1| Protein YME1, putative [Ricinus communis] Length = 716 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L + + R + Sbjct: 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 319 Query: 109 LFIDEI 114 +FIDEI Sbjct: 320 IFIDEI 325 >gi|219109832|ref|XP_002176669.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411204|gb|EEC51132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 350 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP++L+E + Q E + L+ + + L H+L GPPG GKT++A + R+L Sbjct: 23 RPKSLQEVSHQTEVVATLQNAVTTGR-----LPHLLLYGPPGSGKTSVALALCRQL 73 >gi|229580369|ref|YP_002838769.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.G.57.14] gi|229580996|ref|YP_002839395.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.N.15.51] gi|228011085|gb|ACP46847.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.G.57.14] gi|228011712|gb|ACP47473.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.N.15.51] Length = 585 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRD-V 108 +L GPPG GKT++A+ +A +L NF SG ++ AG L A L++ + Sbjct: 362 ILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSSAGPLDAPKIIAEKFYVALDNAPAI 421 Query: 109 LFIDEI 114 +FIDEI Sbjct: 422 IFIDEI 427 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAKA-GDLAALLTNLEDR------DV 108 V+ GPPG GKTT+A+ +A +LG F +++K G+ LL N D+ V Sbjct: 95 VILFGPPGTGKTTIAKALANKLGWAYFELRPSKILSKWYGESELLLDNFFDQVEMNTPAV 154 Query: 109 LFIDEIHRLSI 119 +FIDE+ L++ Sbjct: 155 VFIDELDSLAM 165 >gi|149178953|ref|ZP_01857530.1| cell division protein FtsH [Planctomyces maris DSM 8797] gi|148842227|gb|EDL56613.1| cell division protein FtsH [Planctomyces maris DSM 8797] Length = 685 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 13/85 (15%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGP 62 R +Q+D ++ T + G EA L+ +E + A+ +AL VL VGP Sbjct: 188 RMYAQDDIEV------TFNDVAGIDEAVEELREVVEFLRTPAKYQALGGRIPKGVLLVGP 241 Query: 63 PGLGKTTLAQVVARELGVNFRSTSG 87 PG GKT LA+ VA E GV F SG Sbjct: 242 PGTGKTMLAKAVAGEAGVPFYGLSG 266 >gi|146090753|ref|XP_001466340.1| vesicular transport protein (CDC48 homologue) [Leishmania infantum JPCM5] gi|134070702|emb|CAM69054.1| putative vesicular transport protein (CDC48 homologue) [Leishmania infantum JPCM5] gi|322500176|emb|CBZ35252.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 666 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Query: 53 ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 LDH VL GPPG GKT +A+ +A + G NF S GP Sbjct: 403 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 441 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL GPPG+GKT L +A L V + P I +GD A L NL + Sbjct: 130 VLLHGPPGVGKTKLVHAIAGSLQVPLFFVAAPEIVSGISGDSEAKLRNLFMDAIAAAPSI 189 Query: 109 LFIDEI 114 +FIDEI Sbjct: 190 VFIDEI 195 >gi|24378545|ref|NP_720500.1| putative cell division protein FtsH [Streptococcus mutans UA159] gi|24376393|gb|AAN57806.1|AE014853_13 putative cell division protein FtsH [Streptococcus mutans UA159] Length = 656 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 222 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 281 Query: 109 LFIDEI 114 +FIDEI Sbjct: 282 IFIDEI 287 >gi|19745212|ref|NP_606348.1| cell division protein [Streptococcus pyogenes MGAS8232] gi|21909548|ref|NP_663816.1| putative cell division protein [Streptococcus pyogenes MGAS315] gi|28894925|ref|NP_801275.1| cell division protein [Streptococcus pyogenes SSI-1] gi|50913359|ref|YP_059331.1| cell division protein ftsH [Streptococcus pyogenes MGAS10394] gi|94989522|ref|YP_597622.1| cell division protein ftsH [Streptococcus pyogenes MGAS10270] gi|94993409|ref|YP_601507.1| cell division protein ftsH [Streptococcus pyogenes MGAS10750] gi|139472901|ref|YP_001127616.1| cell division protease FtsH [Streptococcus pyogenes str. Manfredo] gi|209558599|ref|YP_002285071.1| Cell division protein ftsH [Streptococcus pyogenes NZ131] gi|306826398|ref|ZP_07459712.1| cell division protein FtsH [Streptococcus pyogenes ATCC 10782] gi|19747301|gb|AAL96847.1| putative cell division protein [Streptococcus pyogenes MGAS8232] gi|21903728|gb|AAM78619.1| putative cell division protein [Streptococcus pyogenes MGAS315] gi|28810170|dbj|BAC63108.1| putative cell division protein [Streptococcus pyogenes SSI-1] gi|50902433|gb|AAT86148.1| Cell division protein ftsH [Streptococcus pyogenes MGAS10394] gi|94543030|gb|ABF33078.1| Cell division protein ftsH [Streptococcus pyogenes MGAS10270] gi|94546917|gb|ABF36963.1| Cell division protein ftsH [Streptococcus pyogenes MGAS10750] gi|134271147|emb|CAM29357.1| putative cell division protease FtsH [Streptococcus pyogenes str. Manfredo] gi|209539800|gb|ACI60376.1| Cell division protein ftsH [Streptococcus pyogenes NZ131] gi|304431393|gb|EFM34388.1| cell division protein FtsH [Streptococcus pyogenes ATCC 10782] Length = 659 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|71653872|ref|XP_815566.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma cruzi strain CL Brener] gi|70880630|gb|EAN93715.1| mitochondrial ATP-dependent zinc metallopeptidase, putative [Trypanosoma cruzi] Length = 657 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 18/30 (60%), Positives = 22/30 (73%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ +A+E GVNF +G Sbjct: 223 LLVGPPGCGKTMLAKAIAKEAGVNFFYATG 252 >gi|326389728|ref|ZP_08211293.1| PTS system transcriptional activator [Thermoanaerobacter ethanolicus JW 200] gi|325994210|gb|EGD52637.1| PTS system transcriptional activator [Thermoanaerobacter ethanolicus JW 200] Length = 880 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 35/134 (26%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKAGDLAA----LLTNL----- 103 H L VGP G+GKTT A+ + + ++G+ S V+ D A LL+ L Sbjct: 163 HTLIVGPTGVGKTTFAEAMYKYAVQIGI-LHEKSPFVVFNCADYAENPQLLLSQLFGYVK 221 Query: 104 ----------------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 D +LF+DE+HRL +E+L+ M+ M GE + R Sbjct: 222 GAFTGADKEKRGLVDEADGGILFLDEVHRLPPEGQEMLFTLMDKGMYRRM-GESENTRKA 280 Query: 148 KINLSRFTLIAATT 161 K+ +IAATT Sbjct: 281 KVR-----IIAATT 289 >gi|261365228|ref|ZP_05978111.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria mucosa ATCC 25996] gi|288566311|gb|EFC87871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria mucosa ATCC 25996] Length = 422 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 113 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 172 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 173 EKAQRGIVYIDEIDKIS 189 >gi|188585730|ref|YP_001917275.1| ATP-dependent protease LonB [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350417|gb|ACB84687.1| ATP-dependent protease LonB [Natranaerobius thermophilus JW/NM-WN-LF] Length = 537 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ +E GQ E L+ + + HV+ GPPG+GKT A+VV E N Sbjct: 65 RPQKFQEIVGQKEGLKALRAALCGPNPQ-----HVIIYGPPGIGKTAAARVVLEEAKNNP 119 Query: 83 RSTSG 87 RS G Sbjct: 120 RSPFG 124 >gi|168023880|ref|XP_001764465.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684329|gb|EDQ70732.1| predicted protein [Physcomitrella patens subsp. patens] Length = 934 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 685 VLLYGPPGTGKTLLAKAVATECALNFLSVKGP 716 >gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10] gi|150849687|gb|EDN24880.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10] Length = 390 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TLE+ +G + + + F++ + L H+LF GPPG GKT+ +AR + Sbjct: 53 RPDTLEDVSGHQDILATINKFVDTNR-----LPHLLFYGPPGTGKTSTILALARRI 103 >gi|85118512|ref|XP_965460.1| activator 1 41 kDa subunit [Neurospora crassa OR74A] gi|28927269|gb|EAA36224.1| activator 1 41 kDa subunit [Neurospora crassa OR74A] Length = 387 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+TL + T Q + L+ ++A+ L H+LF GPPG GKT+ +A+EL Sbjct: 35 VEKYRPKTLSDVTAQDHTITVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKEL 89 >gi|322492922|emb|CBZ28203.1| vesicular transport protein (CDC48 homologue),putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 666 Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Query: 53 ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 LDH VL GPPG GKT +A+ +A + G NF S GP Sbjct: 403 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 441 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL GPPG+GKT L +A L V S P I +GD A L NL + Sbjct: 130 VLLHGPPGVGKTKLVHAIAGSLQVPLFFVSAPEIVSGISGDSEAKLRNLFMDAIAAAPSI 189 Query: 109 LFIDEI 114 +FIDEI Sbjct: 190 VFIDEI 195 >gi|320590805|gb|EFX03248.1| mitochondrial serine protease [Grosmannia clavigera kw1407] Length = 1161 Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 37/179 (20%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83 FI K R +L FVGPPG+GKT++ + +AR L + R Sbjct: 618 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFSVGGLTDVAEIKGHRR 677 Query: 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLD 135 + G + + + AL + ++ IDEI ++ S + E+L P LD Sbjct: 678 TYVGALPGRV--IQALKKCQTENPLILIDEIDKIGKGYQGDPSSALLELLDPEQNSSFLD 735 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + V ++LS+ + + PL DR + IRL+ Y ++ + I +R Sbjct: 736 HYM-------DVPVDLSKVLFVCTANMTDTIPRPLLDRMEV-IRLSGYVSDEKRAIAER 786 >gi|320583837|gb|EFW98050.1| mitochondrial Lon protease [Pichia angusta DL-1] Length = 1108 Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 34/160 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 + FVGPPG+GKT++ + +AR L F S V A G + L Sbjct: 585 ICFVGPPGVGKTSIGKSIARALNRKFYRFSVGGLTDVAEIKGHRRTYVGAIPGRMVQALK 644 Query: 102 NLEDRDVL-FIDEIHRLSIIVE-----------EILYPAMEDFQLDLMVGEGPSARSVKI 149 N E + L IDEI ++S E+L P +D + V I Sbjct: 645 NTETENPLVLIDEIDKISHTHHGSGGDPSAALLELLDPEQNGTFMDYYM-------DVPI 697 Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 NLSR + + + PL DR + + E E +K Sbjct: 698 NLSRVLFVCTANTLSTIPAPLLDRMEVIEIAGYVEDEKIK 737 >gi|307189842|gb|EFN74107.1| ATPase WRNIP1 [Camponotus floridanus] Length = 400 Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 19/103 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-IAKAGDLAALLTNLED---------- 105 ++F GPPG GKT+L +++A ++ + TS V I +++ + N+ D Sbjct: 34 MIFWGPPGCGKTSLTKIIA---CLSNKITSNNVHIVNLSAVSSGVKNIRDAVTTAKNKSK 90 Query: 106 ---RDVLFIDEIHRLSIIVEEILYPAME--DFQLDLMVGEGPS 143 + ++F+DEIH + + ++I P +E F L E PS Sbjct: 91 FGCKTIVFMDEIHCFNKLQQDIFLPHVEAGTFTLIGCTTENPS 133 >gi|297565860|ref|YP_003684832.1| ATPase [Meiothermus silvanus DSM 9946] gi|296850309|gb|ADH63324.1| ATPase associated with various cellular activities AAA_3 [Meiothermus silvanus DSM 9946] Length = 309 Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 57/227 (25%) Query: 37 CSNLKVFI----EAAKARAEAL---DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89 C+N++ + E KA L HVL PG GKTTLA+ +A+ LG+ FR Sbjct: 10 CANIEQAVVGKHEEVKAVVATLLSGGHVLLEDVPGTGKTTLARALAKSLGLEFRRVQFTP 69 Query: 90 IAKAGDLAALLTNLED----------RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 DL + L +L DE++R + + L AM++ Q+ L Sbjct: 70 DLLPSDLTGVYIYLNGAFEFRPGPLFAGLLLADELNRATPKTQSALLEAMQEGQVTLEGQ 129 Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQ------------DRFGIPIRLNFYEIED 187 P L R L+ AT NP++ DRF I+L + ED Sbjct: 130 THP--------LPRPFLVIAT------QNPIEQEGTYRLPEAQLDRFTARIKLGYPAEED 175 Query: 188 LKTIVQRGAKLTGL----AVTDEAACEIAMRSRGTPRIAGRLLRRVR 230 + +++R + + L VTD A E+ A RL+R+VR Sbjct: 176 ERVMLRRMRQKSPLEELEPVTD--AAEVLQ--------AQRLVRQVR 212 >gi|157273412|gb|ABV27311.1| cell division protein FtsH [Candidatus Chloracidobacterium thermophilum] Length = 618 Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 9/101 (8%) Query: 27 LEEFTGQVEACSN-LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85 ++E ++E N LK E + A VL VGPPG GKT LA+ VA E GV F S Sbjct: 162 VDEAKAELEEVVNFLKAPQEYGRLGARIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 221 Query: 86 SGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLS 118 SG + G AA + +L ++ ++FIDE+ L Sbjct: 222 SGSEFIEMFVGVGAARVRDLFEQARAHAPAIIFIDELDALG 262 >gi|21226549|ref|NP_632471.1| cell division control protein [Methanosarcina mazei Go1] gi|20904821|gb|AAM30143.1| Cell division control protein [Methanosarcina mazei Go1] Length = 792 Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT +AQ VA+E NF S GP Sbjct: 552 ILLYGPPGTGKTLIAQAVAKESNANFISVKGP 583 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G + ++ IE E H V+ GPPG GKT +A+ VA E Sbjct: 196 TYEDIGGLGDEIMRVREMIEMPMKHPELFAHLNIEPPKGVILYGPPGTGKTLIAKAVANE 255 Query: 78 LGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDVLFIDEIHRLS 118 G +F +GP I G+ L + E V+FIDEI ++ Sbjct: 256 SGASFHYIAGPEIVGKFYGESEERLRKIFEEATQEAPSVIFIDEIDSIA 304 >gi|71665863|ref|XP_819897.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma cruzi strain CL Brener] gi|70885218|gb|EAN98046.1| mitochondrial ATP-dependent zinc metallopeptidase, putative [Trypanosoma cruzi] Length = 657 Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust. Identities = 18/30 (60%), Positives = 22/30 (73%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ +A+E GVNF +G Sbjct: 223 LLVGPPGCGKTMLAKAIAKEAGVNFFYATG 252 >gi|332704382|ref|ZP_08424470.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str. Walvis Bay] gi|332554531|gb|EGJ51575.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str. Walvis Bay] Length = 671 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 92/210 (43%), Gaps = 38/210 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L + + Sbjct: 191 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFVQGKKNAPCL 250 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LI 157 +FIDEI + Q +G G R +N + F LI Sbjct: 251 IFIDEIDAVG-------------RQRGAGLGGGHDEREQTLNQLLVEMDGFESNEGVILI 297 Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 AAT R +L L RF + + ++ K I++ A+ T L+ + ++ + + Sbjct: 298 AATNRPDVLDPALLRPGRFDRQVVVPTPDVRGRKRILEVHARRTPLS----SEVDLGVIA 353 Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 RGTP +G L + + A + AKT ++ Sbjct: 354 RGTPGFSGADLENLVNEAALHAAKTNKTQV 383 >gi|328856311|gb|EGG05433.1| putative peroxisomal biogenesis factor 6 [Melampsora larici-populina 98AG31] Length = 871 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F K R+ +L GPPG GKT +A+ VA +G+NF S GP Sbjct: 526 ELFANGLKKRS----GILLFGPPGTGKTLIAKAVATSIGMNFMSVKGP 569 >gi|312137192|ref|YP_004004529.1| ATPase AAA [Methanothermus fervidus DSM 2088] gi|311224911|gb|ADP77767.1| AAA family ATPase, CDC48 subfamily [Methanothermus fervidus DSM 2088] Length = 732 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 16/115 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G EA ++ IE E + VL GPPG GKT LA+ VA E Sbjct: 202 TYEDIGGMKEAIQKVREMIEIPLKNPELFERLGIEPPKGVLLHGPPGTGKTLLAKAVANE 261 Query: 78 LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124 +F + +GP I L + E+ ++FIDEI ++ EE+ Sbjct: 262 SDAHFIAINGPEIMSKYVGGSEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV 316 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G NF + GP Sbjct: 513 VLLYGPPGTGKTLLAKAVANESGANFIAIKGP 544 >gi|307594463|ref|YP_003900780.1| TIP49 domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307549664|gb|ADN49729.1| TIP49 domain protein [Vulcanisaeta distributa DSM 14429] Length = 451 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQVEA ++ +A VL VGPPG GKT LA +ARELG Sbjct: 39 FVGQVEAREAAYYVVKMIRAGKFGGKGVLIVGPPGTGKTALAIGIARELG 88 >gi|289522162|ref|ZP_06439016.1| replication-associated recombination protein A [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503998|gb|EFD25162.1| replication-associated recombination protein A [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 448 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP LE+F GQ L+ +EA + + + GPPG GKTTL + +A Sbjct: 36 MRPAKLEDFVGQEHLLGKDKPLRRLLEAGQ-----VPSCILYGPPGSGKTTLVRAMASVT 90 Query: 79 GVNFRSTSGPV--IAKAGDLAALLTNLE----DRDVLFIDEIHRLSIIVEEILYPAMEDF 132 G + +A+ D+ NL+ ++FIDEI+ + + L P++E Sbjct: 91 GRKLFEINAVTAKVAQLRDVVDTARNLKRSTGKSAIVFIDEIYHFNKQQQNALLPSVERG 150 Query: 133 QLDLMVG---EGPSARSVKINLSR 153 L ++VG E P K LSR Sbjct: 151 DL-ILVGTTTENPYFEINKTLLSR 173 >gi|302405545|ref|XP_003000609.1| mitochondrial chaperone BCS1 [Verticillium albo-atrum VaMs.102] gi|261360566|gb|EEY22994.1| mitochondrial chaperone BCS1 [Verticillium albo-atrum VaMs.102] Length = 497 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 LF GPPG GK++L+ +A E G++ P +A DL + + R V+ +++I Sbjct: 267 LFYGPPGTGKSSLSVALAGEFGLDLYEVKIPSVATDADLEQMFQEVPPRCVVLLEDI 323 >gi|253721988|gb|ACT34058.1| FtsH4 [Aegilops tauschii] Length = 709 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L + + R + Sbjct: 250 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 309 Query: 109 LFIDEI 114 +FIDEI Sbjct: 310 IFIDEI 315 >gi|251781483|ref|YP_002995784.1| cell division protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390111|dbj|BAH80570.1| cell division protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 661 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|242006563|ref|XP_002424119.1| transitional endoplasmic reticulum ATPase, putative [Pediculus humanus corporis] gi|212507436|gb|EEB11381.1| transitional endoplasmic reticulum ATPase, putative [Pediculus humanus corporis] Length = 717 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A E F S GP Sbjct: 478 VLFYGPPGTGKTLLAKAIATECNYTFLSVKGP 509 >gi|220929967|ref|YP_002506876.1| ATP-dependent protease La [Clostridium cellulolyticum H10] gi|220000295|gb|ACL76896.1| ATP-dependent protease La [Clostridium cellulolyticum H10] Length = 779 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 64/269 (23%), Positives = 107/269 (39%), Gaps = 47/269 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98 + VGPPG+GKT++A+ +A+ L N+ R+ G + + ++A Sbjct: 355 LCLVGPPGVGKTSIAKSIAKALNRNYVRISLGGVKDESEIRGHRRTYVGSMPGRI--ISA 412 Query: 99 LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA-----RSVKINLSR 153 L + ++ +DEI ++S AM L+++ E A + NLS Sbjct: 413 LKQAGSNNPLILLDEIDKMSSDFRGDPASAM----LEVLDSEQNFAFRDHYMELPFNLSN 468 Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEAA 208 + + + PL DR I I L+ Y ED +K ++ + KL GL + Sbjct: 469 ALFLTTANTLDTIPRPLLDRMEI-INLSSYTEEDKANIAMKYLLPKQMKLHGLTSRNIRI 527 Query: 209 CEIAMRS-----------RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 E +R R R G + R+V + K++T + L + + Sbjct: 528 DEGTVRDIINYYTREAGVRNLEREIGSVCRKVAKIIVSENKKSVTVNRNNLEKF-LGVKR 586 Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETIS 286 FD R IAR PVG +T+S Sbjct: 587 FRFDYAGERDEIGIARGLAWTPVGGDTLS 615 >gi|42566294|ref|NP_192327.3| AAA-type ATPase family protein [Arabidopsis thaliana] gi|332656970|gb|AEE82370.1| AAA-type ATPase family protein [Arabidopsis thaliana] Length = 609 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 86/207 (41%), Gaps = 44/207 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA--------GDLAALLTNLEDRD 107 VLF GPPG GKT+ A+V+A + G+ V++K G + + L D Sbjct: 364 VLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGAVFSQANELPDGA 423 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDF------QLDLMVGEGPSARSVKINLSRFTLIAATT 161 ++F+DEI +I + ++ A Q+D E + +IAAT Sbjct: 424 IIFLDEIDAFAISRDSEMHEATRRVLSVLLRQIDGFEQE-----------KKVVVIAATN 472 Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK------LTGLAVTDEA-------- 207 R L L RF I + +++ + I+ + AK L LA EA Sbjct: 473 RKQDLDPALISRFDSMIMFDLPDLQTRQEIIAQYAKQLSKPELVQLAQATEAMSGRDIRD 532 Query: 208 ACEIAMRSRGTP----RIAGRLLRRVR 230 C+ A R+ + I G+L+RR + Sbjct: 533 VCQGAERTWASKIINLYIVGQLIRRAK 559 >gi|116207062|ref|XP_001229340.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51] gi|88183421|gb|EAQ90889.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51] Length = 382 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+TL + T Q + L+ ++A+ L H+LF GPPG GKT+ +A+EL Sbjct: 37 VEKYRPKTLSDVTAQDHTITVLERTLQASN-----LPHMLFYGPPGTGKTSTILALAKEL 91 >gi|297848522|ref|XP_002892142.1| hypothetical protein ARALYDRAFT_470277 [Arabidopsis lyrata subsp. lyrata] gi|297337984|gb|EFH68401.1| hypothetical protein ARALYDRAFT_470277 [Arabidopsis lyrata subsp. lyrata] Length = 947 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 701 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 732 >gi|284998984|ref|YP_003420752.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5] gi|284446880|gb|ADB88382.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5] Length = 585 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRD-V 108 +L GPPG GKT++A+ +A +L NF SG ++ AG L A L++ + Sbjct: 362 ILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSSAGPLDAPKIIAEKFYVALDNAPAI 421 Query: 109 LFIDEI 114 +FIDEI Sbjct: 422 IFIDEI 427 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAKA-GDLAALLTNLEDR------DV 108 V+ GPPG GKTT+A+ +A +LG V F +++K G+ LL N D+ V Sbjct: 95 VILFGPPGTGKTTIAKALANKLGWVYFELRPSKILSKWYGESELLLDNFFDQVEMNTPAV 154 Query: 109 LFIDEIHRLSI 119 +FIDE+ L++ Sbjct: 155 VFIDELDSLTM 165 >gi|224118112|ref|XP_002331561.1| predicted protein [Populus trichocarpa] gi|222873785|gb|EEF10916.1| predicted protein [Populus trichocarpa] Length = 562 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 33/202 (16%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107 VLF GPPG GKT+ A+V+A + GV V+ G + L + + Sbjct: 327 VLFEGPPGTGKTSCARVIATQAGVPLLYLPLEVVMSKYYGESERLLGKVFTLANEIPNGA 386 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++F+DE+ + + ++ A L +++ + K + +IAAT R L Sbjct: 387 IIFLDEVDSFAAARDSEMHEATRRI-LSVLLRQIDGFEQDK----KVVVIAATNRKQDLD 441 Query: 168 NPLQDR------FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221 L R FG+P R N EI Q LT E+ +R T + Sbjct: 442 PALISRFDSMITFGLPDRQNRQEI-----AAQYAKHLT--------ESELEEFARVTEDM 488 Query: 222 AGRLLRRVRDFAEVAHAKTITR 243 +GR +R V AE + A I R Sbjct: 489 SGRDIRDVCQQAERSWASKIIR 510 >gi|209875637|ref|XP_002139261.1| ATPase, AAA family protein [Cryptosporidium muris RN66] gi|209554867|gb|EEA04912.1| ATPase, AAA family protein [Cryptosporidium muris RN66] Length = 680 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ +ARE NF S GP Sbjct: 435 ILLYGPPGCGKTLLAKAIARESNANFISIRGP 466 Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDV------ 108 +L GPPG GKT L+ +A E+G+ F SGP + +G A L L D V Sbjct: 113 ILLQGPPGTGKTHLSLCIAGEVGLPFFRVSGPSLISGMSGSSEATLRRLFDNAVENAPCF 172 Query: 109 LFIDEIHRLS 118 + IDEI +S Sbjct: 173 VLIDEIDIIS 182 >gi|78778614|ref|YP_396726.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9312] gi|78712113|gb|ABB49290.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus str. MIT 9312] Length = 617 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 VFIDEI 263 >gi|73544331|ref|XP_848060.1| vesicular transport protein (CDC48 homolog) [Leishmania major strain Friedlin] gi|321438414|emb|CBZ12168.1| putative vesicular transport protein (CDC48 homologue) [Leishmania major strain Friedlin] Length = 666 Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Query: 53 ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 LDH VL GPPG GKT +A+ +A + G NF S GP Sbjct: 403 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 441 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL GPPG+GKT L +A L V + P I +GD A L NL + Sbjct: 130 VLLHGPPGVGKTKLVHAIAGSLQVPLFFVAAPEIVSGISGDSEAKLRNLFMDAIAAAPSI 189 Query: 109 LFIDEI 114 +FIDEI Sbjct: 190 VFIDEI 195 >gi|323126274|gb|ADX23571.1| cell division protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 661 Score = 42.4 bits (98), Expect = 0.090, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|317496811|ref|ZP_07955141.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA] gi|316895823|gb|EFV17975.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA] Length = 434 Score = 42.4 bits (98), Expect = 0.090, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 28/134 (20%) Query: 13 SQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR---------AEALDHVL 58 ++ D +I+L +P+ ++EF GQ EA L V + R ++L Sbjct: 57 AENDGEINLRKPKEIKEFLDQYVIGQDEAKKVLSVAVYNHYKRILMGGDSDVELQKSNIL 116 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD---- 107 +GP G GKT LAQ +A+ L V F + +AG + + N+ D D Sbjct: 117 MLGPTGSGKTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKIIQAADYDIDRA 176 Query: 108 ---VLFIDEIHRLS 118 +++IDEI +++ Sbjct: 177 QCGIIYIDEIDKIT 190 >gi|297832876|ref|XP_002884320.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp. lyrata] gi|297330160|gb|EFH60579.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp. lyrata] Length = 616 Score = 42.4 bits (98), Expect = 0.090, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 8/89 (8%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 VE S L+ I K A VL VGPPG GKT LA+ VA E GV F S S + Sbjct: 341 VEIVSCLQGSINYKKLGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL 400 Query: 93 -AGDLAALLTNL------EDRDVLFIDEI 114 G AA + +L ++FIDE+ Sbjct: 401 FVGRGAARIRDLFNAARKNSPSIIFIDEL 429 >gi|170288230|ref|YP_001738468.1| appr-1-p processing domain-containing protein [Thermotoga sp. RQ2] gi|170175733|gb|ACB08785.1| Appr-1-p processing domain protein [Thermotoga sp. RQ2] Length = 599 Score = 42.4 bits (98), Expect = 0.090, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 60/140 (42%), Gaps = 9/140 (6%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79 LLRP+ E+F GQ + + K +L+ GPPG GKT++ ++ R Sbjct: 11 LLRPKDFEDFVGQDHIFGDKGILRRTLKT-GNMFSSILY-GPPGSGKTSVFSLLKRYFNG 68 Query: 80 --VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133 V ST V I L + +LF+DEIHRL+ + +L +E D Sbjct: 69 EVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLVSHVERGDIV 128 Query: 134 LDLMVGEGPSARSVKINLSR 153 L E PS V LSR Sbjct: 129 LVATTTENPSFAIVPALLSR 148 >gi|90399322|emb|CAH68334.1| H0313F03.5 [Oryza sativa Indica Group] gi|90399388|emb|CAH68418.1| H0818E11.8 [Oryza sativa Indica Group] gi|125549753|gb|EAY95575.1| hypothetical protein OsI_17423 [Oryza sativa Indica Group] Length = 940 Score = 42.4 bits (98), Expect = 0.090, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 693 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 724 >gi|119387548|ref|YP_918582.1| ATP-dependent metalloprotease FtsH [Paracoccus denitrificans PD1222] gi|119378123|gb|ABL72886.1| membrane protease FtsH catalytic subunit [Paracoccus denitrificans PD1222] Length = 610 Score = 42.4 bits (98), Expect = 0.090, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 192 VLLVGPPGTGKTLLARAVAGEAGVTFLSISGSEFVELFVGVGAARVRDLFEQARKSAPAI 251 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 252 IFIDELDAL 260 >gi|327274098|ref|XP_003221815.1| PREDICTED: spermatogenesis-associated protein 5-like [Anolis carolinensis] Length = 876 Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G + + +GP +I+K G+ A L +L + Sbjct: 373 VLLYGPPGTGKTLIARAVANEVGAHVTTINGPEIISKFYGESEARLRQIFAEASLRRPSI 432 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 433 IFIDEIDAL 441 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 647 VLLYGPPGCSKTMIAKALANESGLNFLAVKGP 678 >gi|242077202|ref|XP_002448537.1| hypothetical protein SORBIDRAFT_06g028670 [Sorghum bicolor] gi|241939720|gb|EES12865.1| hypothetical protein SORBIDRAFT_06g028670 [Sorghum bicolor] Length = 928 Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 681 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 712 >gi|227891816|ref|ZP_04009621.1| ATPase of the AAA+ class [Lactobacillus salivarius ATCC 11741] gi|227866381|gb|EEJ73802.1| ATPase of the AAA+ class [Lactobacillus salivarius ATCC 11741] Length = 535 Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 18/77 (23%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFRST---------SGPVIAKAGDLAALLTNL 103 H++F GPPG GKTT+A++VAR LG+ +T G + GDL+ + Sbjct: 312 HMIFEGPPGTGKTTVARIVARLFYALGILENTTVIETKRNELEGKWV---GDLSGKINEK 368 Query: 104 EDR---DVLFIDEIHRL 117 D VLFIDE H+L Sbjct: 369 VDSALGGVLFIDEAHQL 385 >gi|303274320|ref|XP_003056481.1| AAA ATPase [Micromonas pusilla CCMP1545] gi|226462565|gb|EEH59857.1| AAA ATPase [Micromonas pusilla CCMP1545] Length = 749 Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 14/85 (16%) Query: 47 AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------------AK 92 A RAE H++ VGPPG GK+ LA++ A + S GP++ + Sbjct: 213 AGGRAEPASHMVLVGPPGSGKSMLARLTAYIVSECDVSRHGPLVRPSRADIIDVGRSPGR 272 Query: 93 AGDLAALLTNLEDRDVLFIDEIHRL 117 + +L A+ + + VL ID+ HR+ Sbjct: 273 SAELIAIQCDKAEGGVLLIDDFHRM 297 >gi|187918641|ref|YP_001884207.1| cell division protein FtsH [Borrelia hermsii DAH] gi|119861489|gb|AAX17284.1| cell division protein FtsH [Borrelia hermsii DAH] Length = 635 Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ EA L +E K + E + VL VG PG GKT LA+ VA E Sbjct: 171 TFKDVAGQEEAKQELSEIVEFLKYPKKFEKIGARIPKGVLLVGSPGTGKTLLAKAVAGEA 230 Query: 79 GVNFRSTSG 87 GVNF SG Sbjct: 231 GVNFFHMSG 239 >gi|119963777|ref|YP_948114.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter aurescens TC1] gi|119950636|gb|ABM09547.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrobacter aurescens TC1] Length = 450 Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L D Sbjct: 140 AKSNILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 199 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI ++S Sbjct: 200 YDVKKAEQGIIYIDEIDKIS 219 >gi|94991511|ref|YP_599610.1| cell division protein ftsH [Streptococcus pyogenes MGAS2096] gi|94545019|gb|ABF35066.1| Cell division protein ftsH [Streptococcus pyogenes MGAS2096] Length = 540 Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 104 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 163 Query: 109 LFIDEI 114 +FIDEI Sbjct: 164 IFIDEI 169 >gi|322818611|gb|EFZ25968.1| mitochondrial ATP-dependent zinc metallopeptidase, putative [Trypanosoma cruzi] Length = 595 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 18/30 (60%), Positives = 22/30 (73%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ +A+E GVNF +G Sbjct: 161 LLVGPPGCGKTMLAKAIAKEAGVNFFYATG 190 >gi|313664905|ref|YP_004046776.1| ATP-dependent metallopeptidase HflB [Mycoplasma leachii PG50] gi|312949694|gb|ADR24290.1| ATP-dependent metallopeptidase HflB [Mycoplasma leachii PG50] Length = 648 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 33/60 (55%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE + VE LK + A A A A VL GPPG GKT LA+ VA E V+F S +G Sbjct: 177 EEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAG 236 >gi|309389975|gb|ADO77855.1| membrane protease FtsH catalytic subunit [Halanaerobium praevalens DSM 2228] Length = 633 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQV-EACSNLKVFIEAAKARAEALDHVLFVGPPG 64 G +++ D DI+ EE ++ E LK + + AE VL VGPPG Sbjct: 139 GKSKAKLNESDVDITFADVANYEEVKEELQEVIQFLKKPDKFTELGAEVPKGVLMVGPPG 198 Query: 65 LGKTTLAQVVARELGVNFRSTSG 87 GKT +A+ VA E GV F SG Sbjct: 199 TGKTLMAKAVAGEAGVPFYFISG 221 >gi|118097931|ref|XP_414833.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 951 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 10/68 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----------VIAKAGDLAALLTNLEDR 106 L GPPGLGKTTLA V+AR G N + I A + ++L E Sbjct: 354 ALLCGPPGLGKTTLAHVIARHAGYNVVEMNASDDRSPETFRIRIEAATQMKSVLGAEEKP 413 Query: 107 DVLFIDEI 114 + L IDEI Sbjct: 414 NCLIIDEI 421 >gi|115460572|ref|NP_001053886.1| Os04g0617600 [Oryza sativa Japonica Group] gi|38345607|emb|CAD41890.2| OSJNBa0093O08.9 [Oryza sativa Japonica Group] gi|113565457|dbj|BAF15800.1| Os04g0617600 [Oryza sativa Japonica Group] gi|125591647|gb|EAZ31997.1| hypothetical protein OsJ_16174 [Oryza sativa Japonica Group] Length = 940 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 693 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 724 >gi|51246388|ref|YP_066272.1| ATP-dependent protease La [Desulfotalea psychrophila LSv54] gi|81826768|sp|Q6AK61|LON2_DESPS RecName: Full=Lon protease 2; AltName: Full=ATP-dependent protease La 2 gi|50877425|emb|CAG37265.1| probable ATP-dependent protease La [Desulfotalea psychrophila LSv54] Length = 774 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 + FVGPPG+GKT++ Q +A+ +G F S V A AG + + Sbjct: 346 LCFVGPPGVGKTSICQSIAKSMGREFARLSLGGLRDEAEIRGHRRTYVGAMAGKVLRAMQ 405 Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 + + +F +DEI ++S + E+L P + D LDL Sbjct: 406 KVGVANPVFCLDEIDKMSTDFRGDPAAALLEVLDPEQNSSFNDHYLDL-----------D 454 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 +LS+ I + + PLQDR I I+L+ Y ED + I ++ Sbjct: 455 YDLSQVFFITTANSLEGIPIPLQDRMEI-IQLSGYTEEDKQVIAEK 499 >gi|332299592|ref|YP_004441513.1| DNA polymerase III, subunits gamma and tau [Porphyromonas asaccharolytica DSM 20707] gi|332176655|gb|AEE12345.1| DNA polymerase III, subunits gamma and tau [Porphyromonas asaccharolytica DSM 20707] Length = 616 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 13/104 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+T +E GQ C LK I+ K + H LF GP G+GKT+ A+++AR + Sbjct: 26 RPQTFDEMLGQEAICLTLKSAIKQGK-----IAHAYLFCGPRGVGKTSAARILARTINCE 80 Query: 82 FRSTSGPVIAKAGDLAALLT----NLEDRDVL---FIDEIHRLS 118 + G + A L N+ + D +D+I RL+ Sbjct: 81 QLTPQGEACGVCPNCQAALHQRAFNIYELDAASNNSVDDIRRLN 124 >gi|327479804|gb|AEA83114.1| ATP-dependent protease La [Pseudomonas stutzeri DSM 4166] Length = 791 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 VL VGPPG+GKT++ + +A LG F R + G + +A G L L Sbjct: 373 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 432 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI +LS + E L P D LDL + Sbjct: 433 DVEVMNPVIMLDEIDKLSSSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 481 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 482 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYIAEEKLAIAKRHLWPKLLDKTGVPK 540 Query: 199 TGLAVTD---EAACEIAMRSRGTPRIAGRLLRRVR 230 LA++D +A E R G ++ +L + VR Sbjct: 541 ERLAISDSALKAVIEGYAREAGVRQLEKQLGKLVR 575 >gi|325963647|ref|YP_004241553.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter phenanthrenivorans Sphe3] gi|323469734|gb|ADX73419.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter phenanthrenivorans Sphe3] Length = 426 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ D Sbjct: 119 AKSNILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 178 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI ++S Sbjct: 179 YDVKKAEQGIIYIDEIDKIS 198 >gi|284054460|ref|ZP_06384670.1| cell division protein [Arthrospira platensis str. Paraca] Length = 75 Score = 42.4 bits (98), Expect = 0.092, Method: Composition-based stats. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L +D + Sbjct: 10 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNSPCL 69 Query: 109 LFIDEI 114 +FIDEI Sbjct: 70 IFIDEI 75 >gi|241889763|ref|ZP_04777061.1| ATP-dependent protease La [Gemella haemolysans ATCC 10379] gi|241863385|gb|EER67769.1| ATP-dependent protease La [Gemella haemolysans ATCC 10379] Length = 765 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 38/189 (20%) Query: 43 FIEAAKARAEALDHVLFV-GPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA------- 93 F+ K R + +L + GPPG+GK++LA+ +A +G +F R + G V +A Sbjct: 330 FLAVKKLRDDMKSPILCLSGPPGVGKSSLAKSIAASMGRSFVRISLGGVHDEAEIRGHRR 389 Query: 94 -------GDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137 G + L ++ ++ V+ +DEI +++ ++ E++ PA + +D Sbjct: 390 TYLGALPGKIIQSLKKIKTKNPVILLDEIDKMASDIKGDPAAAMLEVIDPAQNNEFVDHY 449 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIV 192 + + +LS+ IA + L+ PL+DR + I L Y I++ K ++ Sbjct: 450 L-------DIPFDLSKVLFIATANNLSLIPAPLRDRMEV-IELESYTIKEKENIAAKYLI 501 Query: 193 QRGAKLTGL 201 R K GL Sbjct: 502 PRQTKENGL 510 >gi|170780555|ref|YP_001708887.1| cell division protein ftsH-like protein [Clavibacter michiganensis subsp. sepedonicus] gi|169155123|emb|CAQ00223.1| cell division protein ftsH homolog [Clavibacter michiganensis subsp. sepedonicus] Length = 666 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 104/247 (42%), Gaps = 52/247 (21%) Query: 34 VEACSNLKVFI-EAAKARAEAL---DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89 +E +K F+ E AK +A VL GPPG GKT LA+ VA E GV F S SG Sbjct: 173 IEELEEIKDFLKEPAKFQAVGARIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSD 232 Query: 90 IAK--AGDLAALLTNLEDR------DVLFIDEI-----HRLSIIVEEILYPAMEDFQLDL 136 + G A+ + +L ++ ++F+DEI HR + Sbjct: 233 FVEMFVGVGASRVRDLFEQAKQNAPAIIFVDEIDAVGRHRGA------------------ 274 Query: 137 MVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIPIRLNFY 183 VG G R +N + LIAAT R +L L RF I ++ Sbjct: 275 GVGGGNDEREQTLNQLLVEMDGFDVKTNVILIAATNRPDVLDPALLRPGRFDRQIGVDAP 334 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 +++ K I++ + LA A ++ + +R TP G L V + A + A++ + Sbjct: 335 DLQGRKQILEVHGRGKPLA----AGVDLEVLARKTPGFTGADLANVLNEAALLTARSNAQ 390 Query: 244 EIADAAL 250 I D AL Sbjct: 391 LIDDRAL 397 >gi|146281624|ref|YP_001171777.1| ATP-dependent protease La [Pseudomonas stutzeri A1501] gi|145569829|gb|ABP78935.1| ATP-dependent protease La [Pseudomonas stutzeri A1501] Length = 791 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 VL VGPPG+GKT++ + +A LG F R + G + +A G L L Sbjct: 373 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 432 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI +LS + E L P D LDL + Sbjct: 433 DVEVMNPVIMLDEIDKLSSSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 481 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 482 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYIAEEKLAIAKRHLWPKLLDKTGVPK 540 Query: 199 TGLAVTD---EAACEIAMRSRGTPRIAGRLLRRVR 230 LA++D +A E R G ++ +L + VR Sbjct: 541 ERLAISDSALKAVIEGYAREAGVRQLEKQLGKLVR 575 >gi|15232908|ref|NP_186894.1| cell division protein ftsH, putative [Arabidopsis thaliana] gi|6957708|gb|AAF32452.1| cell division protein FtsH-like protein [Arabidopsis thaliana] gi|17065470|gb|AAL32889.1| cell division protein FtsH-like protein [Arabidopsis thaliana] gi|30725442|gb|AAP37743.1| At3g02450 [Arabidopsis thaliana] gi|332640288|gb|AEE73809.1| putative cell division protein ftsH [Arabidopsis thaliana] Length = 622 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 8/89 (8%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 VE S L+ I K A VL VGPPG GKT LA+ VA E GV F S S + Sbjct: 347 VEIVSCLQGSINYKKLGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL 406 Query: 93 -AGDLAALLTNL------EDRDVLFIDEI 114 G AA + +L ++FIDE+ Sbjct: 407 FVGRGAARIRDLFNAARKNSPSIIFIDEL 435 >gi|326499736|dbj|BAJ86179.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 707 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L + + R + Sbjct: 256 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 315 Query: 109 LFIDEI 114 +FIDEI Sbjct: 316 IFIDEI 321 >gi|323142056|ref|ZP_08076904.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067] gi|322413443|gb|EFY04314.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067] Length = 651 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA L+ +E K + D VL GPPG GKT LA+ VA E Sbjct: 151 TFKDVAGAEEAKQELEEVVEFLKHPQKYNDLGAKIPKGVLLYGPPGTGKTLLAKAVAGEA 210 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G A+ + +L D+ ++FIDEI Sbjct: 211 GVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKSAPCIVFIDEI 254 >gi|304312881|ref|YP_003812479.1| MoxR-like ATPase [gamma proteobacterium HdN1] gi|301798614|emb|CBL46844.1| MoxR-like ATPase [gamma proteobacterium HdN1] Length = 370 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 30/209 (14%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106 HVL G PGLGKT L + +AR F R P + + L +++ Sbjct: 91 HVLIEGVPGLGKTLLVKALARCFDGQFGRIQFTPDLMPSDVTGHALYDMKTERFTIRRGP 150 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 ++L DEI+R + L M++ Q+ + G+G +A L+ F ++A + Sbjct: 151 AFTNLLLADEINRAPAKTQAALLEIMQEKQITIE-GKGFAA------LTPFMVLATQNPI 203 Query: 164 GLL-TNPLQ----DRFGIPIRLNFYEIED---LKTIVQRGAKLTGLAVTDEAACEIAMRS 215 T PL DRF + IR+++ ++++ L T V G +L GL V A E + S Sbjct: 204 EQEGTYPLPEAELDRFMLKIRIDYPDLQEEIKLVTQVTTGQRLDGLNVD---AIEPVITS 260 Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 RI + V D A V +A + R+ Sbjct: 261 EQVQRIQALVSNIVADPAVVEYAVRLVRQ 289 >gi|302842074|ref|XP_002952581.1| hypothetical protein VOLCADRAFT_105558 [Volvox carteri f. nagariensis] gi|300262220|gb|EFJ46428.1| hypothetical protein VOLCADRAFT_105558 [Volvox carteri f. nagariensis] Length = 1909 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 19/134 (14%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTL 70 +++ +P + + G E ++++ IE E VL GPPG GKT L Sbjct: 381 VTVAKPLSYADLGGIEEVLADIRELIEYPIKHPEVYAWLGVEPPRGVLLHGPPGCGKTAL 440 Query: 71 AQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEIHRLSIIVE 122 A +A E GV F S P I +G+ A L L E RD ++FI + I Sbjct: 441 ANAIANECGVPFLKVSAPEIVSGMSGESEAKLRQLFGEARDLAPCIVFIASAGKDEI--- 497 Query: 123 EILYPAMEDFQLDL 136 + ++P E Q ++ Sbjct: 498 DAIFPKRETAQREM 511 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E G NF S GP Sbjct: 789 VLLYGPPGCGKTLVAKAVANESGANFISIKGP 820 >gi|293630868|gb|ACB29725.3| FtsH4 protein [Triticum monococcum subsp. aegilopoides] gi|293630870|gb|ACU00615.2| FtsH4 protein [Triticum monococcum subsp. monococcum] Length = 706 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L + + R + Sbjct: 256 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 315 Query: 109 LFIDEI 114 +FIDEI Sbjct: 316 IFIDEI 321 >gi|293363689|ref|ZP_06610436.1| recombination factor protein RarA [Mycoplasma alligatoris A21JP2] gi|292552733|gb|EFF41496.1| recombination factor protein RarA [Mycoplasma alligatoris A21JP2] Length = 409 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 11/110 (10%) Query: 22 LRPRTLEEFTGQVEACSNL-KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LRP+ L + GQ L K+ + K +F G G+GKT+ A +A ++ + Sbjct: 8 LRPKKLSDIVGQKHVVELLQKIALNKVKMS------FIFFGESGIGKTSAAFALANQMKL 61 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 S I DL L N E ++ IDEIHRL+ ++IL +E Sbjct: 62 K-TSFFNASIDNKSDLVEKLANSE---IIIIDEIHRLNKDKQDILLSYLE 107 >gi|268325728|emb|CBH39316.1| cell division control protein 48 [uncultured archaeon] Length = 739 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E NF S SGP I Sbjct: 225 VLLRGPPGTGKTLIAKAVANETDANFYSISGPEI 258 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 19/32 (59%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT L + VA E NF S GP Sbjct: 497 ILLFGPPGTGKTMLVKAVANESDANFISIKGP 528 >gi|189205687|ref|XP_001939178.1| ribosome biogenesis ATPase RIX7 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187975271|gb|EDU41897.1| ribosome biogenesis ATPase RIX7 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 740 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 27/52 (51%) Query: 37 CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 C +K + AK A VL GPPG GKT LA+ VA E NF S GP Sbjct: 495 CEPIKDPAKFAKFGISAPTGVLLWGPPGCGKTLLAKAVAAESKANFISVKGP 546 Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT + + A ELGV F GP + Sbjct: 203 ILLHGPPGCGKTVICRAFAAELGVPFIEILGPSV 236 >gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167] gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167] Length = 348 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 24/178 (13%) Query: 54 LDHVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 L H+LF GPPG+GKTT A +AREL G ++RS+ + L D ID Sbjct: 40 LPHLLFYGPPGVGKTTAALALARELYGDSWRSS--------------VLELNASDERGID 85 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTN--- 168 I + F+L ++ + L R + A+TTR LL N Sbjct: 86 VIREKVKEFARTIPTGPVPFKLVILDEADNMTSDAQQALRRIMEMYASTTRFILLANYIS 145 Query: 169 ----PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 P+Q R I R N E + +++ AK TG+ VT++ I S+G R A Sbjct: 146 GIIEPIQSRCAI-FRFNPLPKEAVIERLRQIAKETGVEVTEDGLEAIWEVSQGDMRKA 202 >gi|93007059|ref|YP_581496.1| ATP-dependent protease ATP-binding subunit [Psychrobacter cryohalolentis K5] gi|122414802|sp|Q1Q8J1|CLPX_PSYCK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|92394737|gb|ABE76012.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter cryohalolentis K5] Length = 424 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 15/101 (14%) Query: 33 QVEACSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 Q+ A + K I A A E A ++L +GP G GKT LAQ +AR L V F + Sbjct: 103 QILANDSKKAKIGADDAMVELAKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLT 162 Query: 92 KAGDLAALLTNL-------EDRDV-------LFIDEIHRLS 118 +AG + + N+ D DV ++IDEI ++S Sbjct: 163 EAGYVGEDVENIVQKLLQASDYDVSKAEQGIIYIDEIDKIS 203 >gi|329765595|ref|ZP_08257171.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138033|gb|EGG42293.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 713 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 8/75 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD----V 108 +L GPPG GKT +A+V+A E N S +GP I G+ A L ++ E +D + Sbjct: 208 ILLYGPPGCGKTLIAKVLASESEANMFSINGPEIMNKYYGETEAKLRDIFKEAKDNSPSI 267 Query: 109 LFIDEIHRLSIIVEE 123 +FIDEI ++ EE Sbjct: 268 IFIDEIDAIAPKREE 282 >gi|307721184|ref|YP_003892324.1| ATPase AAA [Sulfurimonas autotrophica DSM 16294] gi|306979277|gb|ADN09312.1| AAA ATPase central domain protein [Sulfurimonas autotrophica DSM 16294] Length = 551 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 189 VLLVGPPGVGKTMIAKAVAHEAGVPFYYQSG 219 >gi|302388876|ref|YP_003824697.1| PTS system transcriptional activator [Thermosediminibacter oceani DSM 16646] gi|302199504|gb|ADL07074.1| PTS system transcriptional activator [Thermosediminibacter oceani DSM 16646] Length = 878 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 40/158 (25%) Query: 36 ACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGP 88 A +LK IE AKA L H L VGP G+GKTT A+ + R E+G +T+ Sbjct: 147 ADESLKAQIEQAKAAILYPPHGL-HTLIVGPTGVGKTTFAEAMYRYAVEMG-KIPATAPF 204 Query: 89 VIAKAGDLAA----LLTNL----------EDRD-----------VLFIDEIHRLSIIVEE 123 V+ D A LL+ L DR+ +LF+DE+HRL +E Sbjct: 205 VVFNCADYAENPQLLLSQLFGYVRGAFTGADREKKGLVEQADGGILFLDEVHRLPPEGQE 264 Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161 +++ M D + +GE + R +R +IAATT Sbjct: 265 MMFLLM-DKGIYRRLGESENTRQ-----ARVLIIAATT 296 >gi|295092869|emb|CBK78976.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium cf. saccharolyticum K10] Length = 434 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 28/128 (21%) Query: 19 ISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR-----AEALD----HVLFVGPPG 64 I+LL+P+ ++EF GQ EA L V + R ++ +D ++L +GP G Sbjct: 63 INLLKPKEIKEFLDEYVVGQEEAKKVLSVAVYNHYKRITSQGSQDVDLQKSNILMLGPTG 122 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------VLF 110 GKT LA +A+ L V F + +AG + + N+ D D +++ Sbjct: 123 SGKTYLANTLAKILNVPFAVADATTLTEAGYVGEDVENILLKIIQAADYDISKAEYGIIY 182 Query: 111 IDEIHRLS 118 IDEI +++ Sbjct: 183 IDEIDKIT 190 >gi|237786214|ref|YP_002906919.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM 44385] gi|237759126|gb|ACR18376.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM 44385] Length = 910 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL GPPG GKT LA+ VA E GV F S SG V A + L T ++ + Sbjct: 209 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFTQAKENSPCI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 IFIDEI 274 >gi|115920972|ref|XP_785189.2| PREDICTED: similar to peroxisomal biogenesis factor 6-like protein [Strongylocentrotus purpuratus] gi|115978372|ref|XP_001187832.1| PREDICTED: similar to peroxisomal biogenesis factor 6-like protein [Strongylocentrotus purpuratus] Length = 956 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 715 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 746 >gi|78777661|ref|YP_393976.1| ATP-dependent protease ATP-binding subunit [Sulfurimonas denitrificans DSM 1251] gi|78498201|gb|ABB44741.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfurimonas denitrificans DSM 1251] Length = 414 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 14/84 (16%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103 A +VL +GP G GKT +AQ +AR L V + +AG D+ +LT L Sbjct: 110 AKSNVLLIGPTGSGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLSIIVE 122 R ++FIDEI ++S + E Sbjct: 170 GDVERAQRGIVFIDEIDKISRMSE 193 >gi|73668447|ref|YP_304462.1| cell division control protein 48 [Methanosarcina barkeri str. Fusaro] gi|72395609|gb|AAZ69882.1| cell division control protein 48 [Methanosarcina barkeri str. Fusaro] Length = 754 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108 VL GPPG GKT +A+ VA E NF + SGP I G+ L + E + Sbjct: 213 VLLHGPPGTGKTLIAKAVASETDANFITISGPEIVSKYYGESEQKLREIFEEAEKEAPSI 272 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 273 IFIDEIDSIA 282 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 485 VLLFGPPGTGKTLLAKAVASESEANFISIKGP 516 >gi|327398442|ref|YP_004339311.1| AAA ATPase central domain-containing protein [Hippea maritima DSM 10411] gi|327181071|gb|AEA33252.1| AAA ATPase central domain protein [Hippea maritima DSM 10411] Length = 370 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 19/92 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF---RSTSGP------VIAKAGDLAALLTNLEDRD 107 VLF GPPG+GKTT A+++A++ ++F +T P + K A +L Sbjct: 39 VLF-GPPGVGKTTYAKLLAKKHRLDFFYLNATDCPTKTLKDTLKKGSKEAPIL------- 90 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139 + IDEIHR +++L P +ED + +MVG Sbjct: 91 -VVIDEIHRFDKKQQDVLLPFLEDGSV-VMVG 120 >gi|327311518|ref|YP_004338415.1| replication factor C large subunit [Thermoproteus uzoniensis 768-20] gi|326947997|gb|AEA13103.1| replication factor C large subunit [Thermoproteus uzoniensis 768-20] Length = 422 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 15/72 (20%) Query: 23 RPRTLEEFTGQVEA--------CSNLKVFIEAAKARAEALDH-------VLFVGPPGLGK 67 RPRT +E Q EA C+ + + KA A+ D VL GPPG+GK Sbjct: 9 RPRTFKEVVDQEEAKYALASWVCARFRAPEQFCKAWAKNKDKKISEAKAVLLAGPPGIGK 68 Query: 68 TTLAQVVARELG 79 TTL +A E+ Sbjct: 69 TTLVHALANEIN 80 >gi|320352983|ref|YP_004194322.1| ATP-dependent proteinase [Desulfobulbus propionicus DSM 2032] gi|320121485|gb|ADW17031.1| ATP-dependent proteinase [Desulfobulbus propionicus DSM 2032] Length = 809 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 92/231 (39%), Gaps = 53/231 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98 + FVGPPG+GKT+L Q +A+ +G F R+ G + + L Sbjct: 370 ICFVGPPGVGKTSLGQAIAKAMGRKFYRLSLGGMRDEAEIRGHRRTYIGALPGRI--LQG 427 Query: 99 LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 L + + V +DEI ++ S + E+L P + D + ++ + Sbjct: 428 LKSVGTNNPVFMMDEIDKIGDDYRGDPSSALLEVLDPEQNNTFSDHYM-------NLPFD 480 Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAVT- 204 LS+ I R + PL DR + I+L+ Y +E+ K ++ R K G+ T Sbjct: 481 LSKVMFITTANRSDTIPGPLLDRMEV-IQLSGYTLEEKMVIANKYLLPRQIKENGIKPTQ 539 Query: 205 ---DEAACEIAMRS-------RGTPRIAGRLLRRV-RDFAEVAHAKTITRE 244 D EI + R R G++ R++ R AE + E Sbjct: 540 IKIDNPTLEIIISRYTHEAGVRNLERALGKVCRKIARKVAEGGKGPYVISE 590 >gi|291000128|ref|XP_002682631.1| peroxisomal biogenesis aaa ATPase Pex1 [Naegleria gruberi] gi|284096259|gb|EFC49887.1| peroxisomal biogenesis aaa ATPase Pex1 [Naegleria gruberi] Length = 818 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT +A +A+E G+NF S GP Sbjct: 501 LLLYGPPGSGKTFIASAIAKECGLNFISIKGP 532 >gi|255066288|ref|ZP_05318143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sicca ATCC 29256] gi|255049498|gb|EET44962.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sicca ATCC 29256] Length = 422 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 113 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 172 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 173 EKAQRGIVYIDEIDKIS 189 >gi|224475654|ref|YP_002633260.1| ATP-dependent metalloprotease FtsH [Staphylococcus carnosus subsp. carnosus TM300] gi|222420261|emb|CAL27075.1| ATP-dependent metalloprotease FtsH [Staphylococcus carnosus subsp. carnosus TM300] Length = 700 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|222099137|ref|YP_002533705.1| recombination factor protein RarA/unknown domain fusion protein [Thermotoga neapolitana DSM 4359] gi|221571527|gb|ACM22339.1| recombination factor protein RarA/unknown domain fusion protein [Thermotoga neapolitana DSM 4359] Length = 599 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 91/232 (39%), Gaps = 35/232 (15%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LLRP ++F+GQ + K +L+ GPPG GKT++ ++ R Sbjct: 11 LLRPEDFDDFSGQDHLFGEDGILRRTLKT-GNMFSAILY-GPPGSGKTSVFSLLKRYFNG 68 Query: 81 NFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME--DF 132 S V ++ ++L E + +LF+DEIHRL+ + +L +E D Sbjct: 69 EVVYLSSTVHG-VSEIKSVLKRGEQMKRYGKKLLLFLDEIHRLNKNQQAVLVTHVERGDI 127 Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192 L E PS + LSR + L PL + DL IV Sbjct: 128 ILVATTTENPSFAVIPALLSRCKI--------LYFKPLSEN-------------DLLEIV 166 Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 ++ K + + D+ + + G R RLL + +V K +T E Sbjct: 167 EKAVKKLNMKLDDDVKKALVRNAEGDAR---RLLNTLEIVYQVFKDKEVTIE 215 >gi|170027981|ref|XP_001841875.1| replication factor C subunit 2 [Culex quinquefasciatus] gi|167868345|gb|EDS31728.1| replication factor C subunit 2 [Culex quinquefasciatus] Length = 344 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-E 77 I RP+ EE G + S L VF A +++ GPPG+GKTT +AR Sbjct: 31 IEKYRPQKFEEIVGNEDTVSRLGVFATQGNA-----PNIIIAGPPGVGKTTTILCLARIL 85 Query: 78 LGVNFR 83 LG NFR Sbjct: 86 LGENFR 91 >gi|169824140|ref|YP_001691751.1| cell division protein [Finegoldia magna ATCC 29328] gi|302380855|ref|ZP_07269318.1| putative Cell division protease FtsH [Finegoldia magna ACS-171-V-Col3] gi|167830945|dbj|BAG07861.1| cell division protein [Finegoldia magna ATCC 29328] gi|302311350|gb|EFK93368.1| putative Cell division protease FtsH [Finegoldia magna ACS-171-V-Col3] Length = 628 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LAQ VA E V F S SG + A + L D+ + Sbjct: 199 VLLVGPPGTGKTLLAQAVAGEAKVPFFSMSGSEFVEMFVGLGASKVRDLFKQAADKAPCI 258 Query: 109 LFIDEI 114 +FIDEI Sbjct: 259 VFIDEI 264 >gi|126460718|ref|YP_001056996.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum calidifontis JCM 11548] gi|126250439|gb|ABO09530.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum calidifontis JCM 11548] Length = 731 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E G NF + GP I G+ ++ + + V Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFVAVRGPEIFSKWVGESEKMVREIFRKARMAAPAV 550 Query: 109 LFIDEIHRLS 118 +FIDEI L+ Sbjct: 551 IFIDEIDALA 560 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 16/115 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ +A ++ +E E H +L +GPPG GKT LA+ VA E Sbjct: 177 TWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAVANE 236 Query: 78 LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 F + +GP I G+ A L + + ++FIDEI ++ EE+ Sbjct: 237 ANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 291 >gi|116670949|ref|YP_831882.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter sp. FB24] gi|166214753|sp|A0JXL2|CLPX_ARTS2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|116611058|gb|ABK03782.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter sp. FB24] Length = 429 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ D Sbjct: 119 AKSNILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 178 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI ++S Sbjct: 179 YDVKKAEQGIIYIDEIDKIS 198 >gi|319428675|gb|ADV56698.1| AAA-family ATPase [Phaseolus vulgaris] Length = 949 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 703 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 734 >gi|298493199|ref|YP_003723376.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] gi|298235117|gb|ADI66253.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] Length = 631 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L +D + Sbjct: 211 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 270 Query: 109 LFIDEI 114 +FIDEI Sbjct: 271 IFIDEI 276 >gi|237745592|ref|ZP_04576072.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes HOxBLS] gi|229376943|gb|EEO27034.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes HOxBLS] Length = 423 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104 A ++L VGP G GKT LAQ +AR L V F + +AG + LL N + Sbjct: 113 AKSNILLVGPTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCD 172 Query: 105 ------DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 173 YDVEKAQRGIVYIDEIDKIS 192 >gi|218883356|ref|YP_002427738.1| Cell division control protein 48, AAA family [Desulfurococcus kamchatkensis 1221n] gi|218764972|gb|ACL10371.1| Cell division control protein 48, AAA family [Desulfurococcus kamchatkensis 1221n] Length = 746 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 26/120 (21%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ E ++ +E E +H +L GPPG GKT LA+ +A E Sbjct: 186 TWEDIGDLDEVKQKIREIVELPLKYPELFEHLGIEPPKGILLYGPPGTGKTLLAKALANE 245 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------------DVLFIDEIHRLSIIVEEI 124 +G F + +GP I ++ E+R V+FIDEI ++ EE+ Sbjct: 246 IGAYFVTINGPEI-----MSKFYGESEERLRKIFEEAQANAPAVIFIDEIDSIAPKREEV 300 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E G NF + GP V++K G+ + + R V Sbjct: 501 ILLFGPPGTGKTLLAKAVATESGANFITVRGPEVLSKWVGESEKAIRQIFRRARMVAPAV 560 Query: 109 LFIDEIHRLSII 120 +F DEI ++ I Sbjct: 561 VFFDEIDSIAGI 572 >gi|108761752|ref|YP_630244.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus DK 1622] gi|8134368|sp|Q9X5N1|CLPX_MYXXA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|4838464|gb|AAD31003.1|AF127082_2 ATP-dependent protease ATPase subunit ClpX [Myxococcus xanthus] gi|108465632|gb|ABF90817.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Myxococcus xanthus DK 1622] Length = 427 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 31/136 (22%) Query: 14 QEDADISLLRPR------TLEEFT-GQVEACSNLKVFIEAAKARAEAL----------DH 56 +E D L PR L+E+ GQ A L V + R E+ + Sbjct: 56 EETKDTKLRIPRPSEIKAVLDEYVIGQERAKKTLSVAVHNHYKRIESKVAMEDVELQKSN 115 Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL--------- 103 +L +GP G GKT LAQ +AR L V F + +AG D+ ++ NL Sbjct: 116 ILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIE 175 Query: 104 -EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 176 RAQRGIVYIDEIDKIA 191 >gi|322700463|gb|EFY92218.1| DNA replication ATPase [Metarhizium acridum CQMa 102] Length = 1289 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 18/152 (11%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP TL++ GQ N L+ IE + + ++ G G GKTT+A+ +A +G Sbjct: 881 MRPTTLDDVCGQDLVGPNGVLRGLIETNR-----VPSMILWGASGTGKTTIARCIAHMVG 935 Query: 80 VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F +++G K + A+ L+ R ++F DEIHR + +++ +E Sbjct: 936 SRFVELNATSTGVSECKKLFQEAASELSLTGRRTIIFCDEIHRFNKAQQDVFLKPVEAGT 995 Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160 + L+ E PS + LSR FTL + T Sbjct: 996 VTLIGATTENPSFKVASALLSRCRTFTLRSLT 1027 >gi|315426144|dbj|BAJ47789.1| AAA family ATPase [Candidatus Caldiarchaeum subterraneum] Length = 726 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E NF +GP I G+ A L + E + Sbjct: 218 VLLYGPPGCGKTLLAKAVATEAEANFILINGPEIMNKYYGETEARLREIFRKAEEEAPSI 277 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 278 IFIDEIDAIA 287 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E NF + GP I Sbjct: 491 VLLYGPPGCGKTLLAKAVATESEANFITIKGPEI 524 >gi|300725894|ref|ZP_07059357.1| cell division protein FtsH [Prevotella bryantii B14] gi|299776831|gb|EFI73378.1| cell division protein FtsH [Prevotella bryantii B14] Length = 695 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 91/226 (40%), Gaps = 44/226 (19%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ A ++ +E K + D L VGPPG GKT LA+ VA E Sbjct: 198 TFKDVAGQEGAKQEVEEIVEFLKNPKKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 257 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130 GV F S SG V A + L +++ ++FIDEI + + PAM Sbjct: 258 GVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARSK--NPAM- 314 Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177 G R +N S ++AAT RV +L L RF Sbjct: 315 ---------GGNDERENTLNALLTEMDGFGTNSGVIILAATNRVDMLDKALLRAGRFDRE 365 Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223 I ++ ++ + K I K + + + +I + SR TP +G Sbjct: 366 IHVDLPDLNERKAIFNVHLK----PIKVDKSVDIDLLSRQTPGFSG 407 >gi|284161864|ref|YP_003400487.1| ATPase AAA [Archaeoglobus profundus DSM 5631] gi|284011861|gb|ADB57814.1| AAA ATPase central domain protein [Archaeoglobus profundus DSM 5631] Length = 349 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 24/194 (12%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALDHVLFVGPPGLGKTTLAQV 73 + +++ +E+ GQ EA ++V ++ K A +VLF GPPG GKT A+ Sbjct: 92 ETEIVKDVKIEDVVGQEEAKKKVRVILKYLQNPEKFGKWAPKNVLFYGPPGTGKTMTAKA 151 Query: 74 VARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEIL 125 +A E V F S + GD A + L +R ++F+DE ++ L Sbjct: 152 LANEANVPFISVKSTKLIGEHVGDGARRIHELYERARQVAPCIVFLDEFDSIA------L 205 Query: 126 YPAMEDFQLDLMVGEGPSARSVKIN----LSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 + +D + D V E +A +++ IAAT R+ L+ ++ RF I Sbjct: 206 DRSYQDLRGD--VSEVVNALLTELDGIEKNEGICTIAATNRIELIDPSIRSRFEEEIEFT 263 Query: 182 FYEIEDLKTIVQRG 195 +E+ I++ Sbjct: 264 LPSLEERLKILENN 277 >gi|291087564|ref|ZP_06572003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium sp. M62/1] gi|291074653|gb|EFE12017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium sp. M62/1] Length = 443 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 28/134 (20%) Query: 19 ISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR-----AEALD----HVLFVGPPG 64 I+LL+P+ ++EF GQ EA L V + R ++ +D ++L +GP G Sbjct: 72 INLLKPKEIKEFLDEYVVGQEEAKKVLSVAVYNHYKRITSQGSQDVDLQKSNILMLGPTG 131 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------VLF 110 GKT LA +A+ L V F + +AG + + N+ D D +++ Sbjct: 132 SGKTYLANTLAKILNVPFAVADATTLTEAGYVGEDVENILLKIIQAADYDISKAEYGIIY 191 Query: 111 IDEIHRLSIIVEEI 124 IDEI +++ E + Sbjct: 192 IDEIDKITKKSENV 205 >gi|160894591|ref|ZP_02075367.1| hypothetical protein CLOL250_02143 [Clostridium sp. L2-50] gi|156863902|gb|EDO57333.1| hypothetical protein CLOL250_02143 [Clostridium sp. L2-50] Length = 640 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 42/224 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT +A+ VA E GV F S SG + G A+ + +L D + Sbjct: 218 VLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDEAKKNAPCI 277 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRF------TLI 157 +FIDEI ++ Q +G G R +N + F ++ Sbjct: 278 IFIDEIDAVA-------------RQRGTGLGGGHDEREQTLNQLLVEMDGFGVNEGIIVL 324 Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 AAT RV +L + + RF + +N +++ + I++ K LA D +IA Sbjct: 325 AATNRVDILDHAILRPGRFDRKVFVNRPDVKGREEILKVHTKNKPLA-EDVNLNDIA--- 380 Query: 216 RGTPRIAGRLLRRVRDFAEVAHAK----TITREIADAALLRLAI 255 R T AG L + + A + AK I +E D + +++ I Sbjct: 381 RTTAGFAGADLENLMNEAAICAAKDNRAYIVKEDVDKSFIKVGI 424 >gi|148272023|ref|YP_001221584.1| cell division protein, membrane-bound ATP-dependent protease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829953|emb|CAN00878.1| cell division protein, membrane-bound ATP-dependent protease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 666 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 104/247 (42%), Gaps = 52/247 (21%) Query: 34 VEACSNLKVFI-EAAKARAEAL---DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89 +E +K F+ E AK +A VL GPPG GKT LA+ VA E GV F S SG Sbjct: 173 IEELEEIKDFLKEPAKFQAVGARIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSD 232 Query: 90 IAK--AGDLAALLTNLEDR------DVLFIDEI-----HRLSIIVEEILYPAMEDFQLDL 136 + G A+ + +L ++ ++F+DEI HR + Sbjct: 233 FVEMFVGVGASRVRDLFEQAKQNAPAIIFVDEIDAVGRHRGA------------------ 274 Query: 137 MVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIPIRLNFY 183 VG G R +N + LIAAT R +L L RF I ++ Sbjct: 275 GVGGGNDEREQTLNQLLVEMDGFDVKTNVILIAATNRPDVLDPALLRPGRFDRQIGVDAP 334 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 +++ K I++ + LA A ++ + +R TP G L V + A + A++ + Sbjct: 335 DLQGRKQILEVHGRGKPLA----AGVDLEVLARKTPGFTGADLANVLNEAALLTARSNAQ 390 Query: 244 EIADAAL 250 I D AL Sbjct: 391 LIDDRAL 397 >gi|146328648|ref|YP_001209397.1| recombination factor protein RarA [Dichelobacter nodosus VCS1703A] gi|146232118|gb|ABQ13096.1| ATPase, AAA family domain protein [Dichelobacter nodosus VCS1703A] Length = 429 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 17/148 (11%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRPRTL E+ GQ V + L V +E R + VL+ G PG GKTTLA ++A Sbjct: 18 LRPRTLAEYVGQQHIVGQGTPLAVAVE----RKQPFSMVLW-GAPGCGKTTLALLLAHLF 72 Query: 79 GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F S + +A A L + +LFIDEIHR + ++ L P +E+ Sbjct: 73 DAEFIRLSAVFSGVKEVREASIQAQLFHQNGRQTLLFIDEIHRFNKAQQDALLPDIENGA 132 Query: 134 LDLMVG---EGPSARSVKINLSRFTLIA 158 + + +G E P+ + LSR ++A Sbjct: 133 V-IFIGATTENPAFHLNRALLSRVRVLA 159 >gi|91786625|ref|YP_547577.1| FtsH-2 peptidase [Polaromonas sp. JS666] gi|91695850|gb|ABE42679.1| membrane protease FtsH catalytic subunit [Polaromonas sp. JS666] Length = 609 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 196 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGGGAARVRDLFEQARSMAPAI 255 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 256 IFIDELDAL 264 >gi|82539183|ref|XP_724000.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii str. 17XNL] gi|23478491|gb|EAA15565.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii] Length = 330 Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L++ Q A S LK I + + + H++F GPPG GKT+ +A EL Sbjct: 11 RPKKLDDIVHQTNAISMLKEVI-----KTKNMPHLIFHGPPGTGKTSAINALAHEL 61 >gi|311069313|ref|YP_003974236.1| class III heat-shock ATP-dependent LonA protease [Bacillus atrophaeus 1942] gi|310869830|gb|ADP33305.1| class III heat-shock ATP-dependent LonA protease [Bacillus atrophaeus 1942] Length = 774 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 58/197 (29%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPV-------IA 91 + GPPG+GKT+LA+ +A+ +G +F R+ G + + Sbjct: 350 LCLAGPPGVGKTSLAKSIAKSMGRSFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 409 Query: 92 KAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPS 143 KAG L V +DEI ++ S + E+L P D + E Sbjct: 410 KAGKLNP---------VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSTFSDHYIEEN-- 458 Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQR 194 +LS+ IA + + PL+DR I + EIE L K + + Sbjct: 459 -----FDLSKVLFIATANNLATIPGPLRDRMEIINISGYTEIEKLEIVKDHLLPKQLKEH 513 Query: 195 GAKLTGLAVTDEAACEI 211 G K L + D+A +I Sbjct: 514 GLKKGNLQIRDQAILDI 530 >gi|294670435|ref|ZP_06735317.1| hypothetical protein NEIELOOT_02154 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307899|gb|EFE49142.1| hypothetical protein NEIELOOT_02154 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 336 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 27 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 86 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 87 EKAQRGIVYIDEIDKIS 103 >gi|237747618|ref|ZP_04578098.1| DNA-binding ATP-dependent protease La [Oxalobacter formigenes OXCC13] gi|229378980|gb|EEO29071.1| DNA-binding ATP-dependent protease La [Oxalobacter formigenes OXCC13] Length = 807 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 42/231 (18%) Query: 12 VSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTT 69 +S ED DI+ R E+ G + + F+ K E +L F+GPPG+GKT+ Sbjct: 327 ISSEDRTDIAEARKILDEDHYGLEKVKKRILEFLAVHKLNPEGKSPLLCFIGPPGVGKTS 386 Query: 70 LAQVVARELGVNF-RSTSGPVIAKA-------GDLAALLTNL--------EDRDVLFIDE 113 L Q +A+ G F R + G V +A + AL N+ + V+ +DE Sbjct: 387 LGQSIAKATGREFVRVSMGGVHDEAEIRGHRRTYIGALPGNIIQAIRRAGTNNCVMLLDE 446 Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 + +L S + E+L PA D + +V +LS+ I Sbjct: 447 VDKLGNGVHGDPSAALLEVLDPAQNSTFRDNYL-------AVPFDLSKVMFICTANNPDT 499 Query: 166 LTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEAACEI 211 + PL+DR + I+L Y ++ L+ +++R + GL + C+I Sbjct: 500 IPGPLRDRLEM-IQLPGYTEQEKTQIALRYLIKRQREENGLKPEN---CDI 546 >gi|182418145|ref|ZP_02949445.1| putative Cell division protease FtsH [Clostridium butyricum 5521] gi|237666212|ref|ZP_04526199.1| cell division protease FtsH family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377963|gb|EDT75503.1| putative Cell division protease FtsH [Clostridium butyricum 5521] gi|237658302|gb|EEP55855.1| cell division protease FtsH family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 703 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ EA +LK I+ A+ + VL VGPPG GKT +A+ VA E Sbjct: 169 TFDDVAGQEEAKESLKEVIDFLNCPAKYTEIGAKLPKGVLLVGPPGTGKTLIAKAVAGEA 228 Query: 79 GVNFRSTSG 87 V F S SG Sbjct: 229 KVPFFSLSG 237 >gi|149045257|gb|EDL98343.1| Werner helicase interacting protein 1, isoform CRA_a [Rattus norvegicus] Length = 334 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 19/105 (18%) Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75 +RP TL+++ GQ A L+ +E + + ++ GPPG GKTTLA ++A Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 280 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113 ++ + F + S AK D+ ++ ++ + +LFIDE Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDE 324 >gi|154339832|ref|XP_001565873.1| vesicular transport protein (CDC48 homologue) [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063191|emb|CAM45391.1| putative vesicular transport protein (CDC48 homologue) [Leishmania braziliensis MHOM/BR/75/M2904] Length = 666 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Query: 53 ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 LDH VL GPPG GKT +A+ +A + G NF S GP Sbjct: 403 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 441 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL GPPG+GKT L +A L V S P I +GD A L NL + Sbjct: 130 VLLHGPPGVGKTRLVHAIAGSLQVPLFFVSAPEIVSGISGDSEAKLRNLFMDAIAASPSI 189 Query: 109 LFIDEI 114 +FIDEI Sbjct: 190 VFIDEI 195 >gi|308800808|ref|XP_003075185.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri] gi|116061739|emb|CAL52457.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri] Length = 566 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 97/223 (43%), Gaps = 41/223 (18%) Query: 15 EDADISLLRPRTLEEFT-----------GQVEACSN-LKVFIEAAKARAEALDHV----- 57 EDA + + RP L E G +E N LK +E A+ EA+ V Sbjct: 277 EDARVKV-RPSALREVAIEIPNVRWDDVGGLEEVKNRLKEAVEWAEKHPEAMKRVGATPP 335 Query: 58 ---LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD----- 107 L GPPG KT LA+ VA G NF S G + GD + ++ R Sbjct: 336 KGILLYGPPGCSKTMLARAVANASGRNFISIKGSELFSKWVGDSEKAVRSVFARARSSQP 395 Query: 108 -VLFIDEIHRLSIIVEEILY---PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 V+FIDE+ L+ P+++D + ++GE + +N+ T++AAT R Sbjct: 396 CVIFIDEVDGLAGTRGGGEQGGAPSVQDRVITQLLGEM-DGLAPTVNV---TIVAATNRP 451 Query: 164 GLLTNPLQDRFGIPIRLNFY----EIEDLKTIVQRGAKLTGLA 202 L+ + L R G RL + IED +I+Q K T LA Sbjct: 452 DLVDSALL-RPGRFDRLLYVPPPSSIEDRLSILQVLFKNTPLA 493 >gi|157112624|ref|XP_001657594.1| replication factor C, 37kD-subunit, putative [Aedes aegypti] gi|108877998|gb|EAT42223.1| replication factor C, 37kD-subunit, putative [Aedes aegypti] Length = 147 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-E 77 I RP+ EE G + S L VF A +++ GPPG+GKTT +AR Sbjct: 30 IEKYRPQKFEEIVGNEDTVSRLGVFATQGNA-----PNIIIAGPPGVGKTTTILCLARIL 84 Query: 78 LGVNFR 83 LG NFR Sbjct: 85 LGENFR 90 >gi|90961309|ref|YP_535225.1| ATPases of the AAA+ class [Lactobacillus salivarius UCC118] gi|90820503|gb|ABD99142.1| ATPases of the AAA+ class [Lactobacillus salivarius UCC118] Length = 535 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 18/77 (23%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFRST---------SGPVIAKAGDLAALLTNL 103 H++F GPPG GKTT+A++VAR LG+ +T G + GDL+ + Sbjct: 312 HMIFEGPPGTGKTTVARIVARLFYALGILENTTVIETKRNELEGKWV---GDLSGKINEK 368 Query: 104 EDR---DVLFIDEIHRL 117 D VLFIDE H+L Sbjct: 369 VDSALGGVLFIDEAHQL 385 >gi|83319940|ref|YP_424015.1| ATP-dependent metalloprotease FtsH [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283826|gb|ABC01758.1| ATP-dependent metalloprotease FtsH [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 650 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 33/60 (55%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE + VE LK + A A A A VL GPPG GKT LA+ VA E V+F S +G Sbjct: 180 EEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAG 239 >gi|46204752|ref|ZP_00049541.2| COG0465: ATP-dependent Zn proteases [Magnetospirillum magnetotacticum MS-1] Length = 485 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 8/82 (9%) Query: 45 EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN 102 E K A +L VGPPG GKT LA+ VA E GV F S SG + G AA + + Sbjct: 180 EYGKLGAHIPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMFVGVGAARVRD 239 Query: 103 LEDR------DVLFIDEIHRLS 118 L ++ ++FIDE+ L Sbjct: 240 LFEQARKSAPAIIFIDELDALG 261 >gi|313158087|gb|EFR57492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alistipes sp. HGB5] Length = 425 Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 29/127 (22%) Query: 21 LLRPRTLEEFTGQ-------------VEACSNLKVFIEAAKARAEALD--HVLFVGPPGL 65 LL+P +++F Q V ++ K + A K +D +++ VGP G Sbjct: 75 LLKPAQIKDFLDQYVIGQDDAKRYMAVAVYNHYKRLLYAPKEDEVEIDKSNIVLVGPTGT 134 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111 GKT +A+ +A+ L V F V+ +AG D+ ++L+ L +R ++FI Sbjct: 135 GKTLMARTIAKLLKVPFTIVDATVLTEAGYVGEDVESILSRLLQVADYNVEQAERGIVFI 194 Query: 112 DEIHRLS 118 DEI +++ Sbjct: 195 DEIDKIA 201 >gi|313887429|ref|ZP_07821118.1| DNA polymerase III, subunit gamma and tau [Porphyromonas asaccharolytica PR426713P-I] gi|312923071|gb|EFR33891.1| DNA polymerase III, subunit gamma and tau [Porphyromonas asaccharolytica PR426713P-I] Length = 601 Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 13/104 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+T +E GQ C LK I+ K + H LF GP G+GKT+ A+++AR + Sbjct: 13 RPQTFDEMLGQEAICLTLKSAIKQGK-----IAHAYLFCGPRGVGKTSAARILARTINCE 67 Query: 82 FRSTSGPVIAKAGDLAALLT----NLEDRDVL---FIDEIHRLS 118 + G + A L N+ + D +D+I RL+ Sbjct: 68 QLTPQGEACGVCPNCQAALHQRAFNIYELDAASNNSVDDIRRLN 111 >gi|300214188|gb|ADJ78604.1| ATPases of the AAA+ class [Lactobacillus salivarius CECT 5713] Length = 535 Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 18/77 (23%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFRST---------SGPVIAKAGDLAALLTNL 103 H++F GPPG GKTT+A++VAR LG+ +T G + GDL+ + Sbjct: 312 HMIFEGPPGTGKTTVARIVARLFYALGILENTTVVETKRNELEGKWV---GDLSGKINEK 368 Query: 104 EDR---DVLFIDEIHRL 117 D VLFIDE H+L Sbjct: 369 VDSALGGVLFIDEAHQL 385 >gi|323352805|gb|EGA85107.1| Pex6p [Saccharomyces cerevisiae VL3] Length = 952 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F K R+ +LF GPPG GKT +A+ +A +NF S GP Sbjct: 756 ELFTSGMKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 799 >gi|312880130|ref|ZP_07739930.1| ATP-dependent proteinase [Aminomonas paucivorans DSM 12260] gi|310783421|gb|EFQ23819.1| ATP-dependent proteinase [Aminomonas paucivorans DSM 12260] Length = 788 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-ARAEALDHVL-FVGPPGLGKTTL 70 S++ D+ L R E+ G E + F+ K A E HVL FVGPPG+GKT+L Sbjct: 300 SKDRLDVELARTVLDEDHYGLDEVKGRILEFLSVRKLAGKEMRGHVLCFVGPPGVGKTSL 359 Query: 71 AQVVARELGVNFRSTS 86 A+ +AR L F S Sbjct: 360 ARSIARSLNRRFVHMS 375 >gi|297288904|ref|XP_001101055.2| PREDICTED: peroxisome biogenesis factor 1 isoform 2 [Macaca mulatta] Length = 1216 Score = 42.4 bits (98), Expect = 0.099, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 851 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 882 >gi|303279056|ref|XP_003058821.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459981|gb|EEH57276.1| predicted protein [Micromonas pusilla CCMP1545] Length = 865 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 50/232 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLT 101 + VGPPG+GKT++ Q +AR L FR + G V A G L L Sbjct: 380 ITLVGPPGVGKTSIGQSIARALDRKFFRFSVGGLSDVAEIKGHRRTYVGAMPGKLVQCLK 439 Query: 102 NLE-DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + D V+ IDE+ +L + + E+L P LD + V ++LS Sbjct: 440 STGVDNPVVLIDEVDKLGRGYQGDPASALLELLDPEQNGSFLDHYL-------DVPVDLS 492 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----GAKLTGLAVTDEA 207 + + + + PL DR + +RL+ Y ++ I +R + +G+ ++ + Sbjct: 493 KVLFVCTANVLDTIPGPLLDRMEV-VRLSGYIADEKNAIARRYLEKNAKERSGVGESEAS 551 Query: 208 ACEIAMRS--RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 + AM+S R AG VR+ + H + I R++A L+LA K Sbjct: 552 ITDQAMKSLIEDYCREAG-----VRNLQK--HLEKIYRKVA----LKLAKSK 592 >gi|255575800|ref|XP_002528799.1| ATP-dependent protease La, putative [Ricinus communis] gi|223531802|gb|EEF33621.1| ATP-dependent protease La, putative [Ricinus communis] Length = 890 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 33/210 (15%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKT 68 ++ + D D+ + R + G V+ + ++ K + +A VL FVGPPG+GKT Sbjct: 359 KDSEEHDLDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKT 418 Query: 69 TLAQVVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR-----DVLFID 112 +LA +A LG F R + G V +A G + L + R V+ +D Sbjct: 419 SLASSIATALGRKFVRLSLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLD 478 Query: 113 EIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 EI + V E+L P D + +V +LS+ +A R Sbjct: 479 EIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYL-------NVPFDLSKVIFVATANRAQ 531 Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + PL DR + I L Y E+ I R Sbjct: 532 PIPPPLLDRMEV-IELPGYTPEEKLRIAMR 560 >gi|119597247|gb|EAW76841.1| peroxisome biogenesis factor 1, isoform CRA_b [Homo sapiens] Length = 1227 Score = 42.4 bits (98), Expect = 0.099, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 820 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 851 >gi|220932329|ref|YP_002509237.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halothermothrix orenii H 168] gi|254763850|sp|B8CY73|CLPX_HALOH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|219993639|gb|ACL70242.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halothermothrix orenii H 168] Length = 416 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L VGP G GKT LAQ +AR L V F T + +AG D+ +L L Sbjct: 111 NILMVGPTGCGKTLLAQTLARILDVPFAITDATSLTEAGYVGEDVENILLKLIQAADYDI 170 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 171 EKAERGIIYIDEIDKIA 187 >gi|116753401|ref|YP_842519.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta thermophila PT] gi|116664852|gb|ABK13879.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT] Length = 739 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 8/53 (15%) Query: 44 IEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 IE R E +H +L GPPG GKT +AQ VA E NF S GP Sbjct: 480 IEWPLKRPERFEHMGIKPPKGILLYGPPGTGKTLIAQAVANETNANFISVRGP 532 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E G +F S +GP I G+ L N + Sbjct: 229 VLLYGPPGTGKTLIAKAVANESGASFFSIAGPEIMSKYYGESEQRLREIFEEANSNTPSI 288 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 289 VFIDELDSIA 298 >gi|315607707|ref|ZP_07882701.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574] gi|315250643|gb|EFU30638.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574] Length = 690 Score = 42.4 bits (98), Expect = 0.100, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 29/183 (15%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E GV F S SG V A + L +++ ++ Sbjct: 230 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKAPCII 289 Query: 110 FIDEIH-------RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 FIDEI + S++ + L M G G + S ++AAT R Sbjct: 290 FIDEIDAVGRARAKNSMMNGNSEQENTLNALLTEMDGFGTN--------SGVIILAATNR 341 Query: 163 VGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 V +L L RF I ++ ++ + K I Q L + V D + +I + +R TP Sbjct: 342 VDMLDAALLRAGRFDRQIHVDLPDLNERKEIFQ--VHLKPVKVDD--SVDIDLLARQTPG 397 Query: 221 IAG 223 +G Sbjct: 398 FSG 400 >gi|297681089|ref|XP_002818269.1| PREDICTED: peroxisome biogenesis factor 1-like [Pongo abelii] Length = 1259 Score = 42.4 bits (98), Expect = 0.100, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 853 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 884 >gi|325680665|ref|ZP_08160203.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus albus 8] gi|324107445|gb|EGC01723.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus albus 8] Length = 424 Score = 42.4 bits (98), Expect = 0.100, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 31/139 (22%) Query: 10 RNVSQEDADISLLRPR----TLEEFT-GQVEACSNLKVFIEAAKARAEALD--------- 55 + S ED I+L +P L+E+ GQ EA L V + R LD Sbjct: 63 KTASAEDG-ITLKKPAEIKAVLDEYVVGQDEAKIALSVAVYNHYKRILTLDDDFDDVEIQ 121 Query: 56 --HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT-------- 101 +VL +GP G GKT LAQ +AR L V F + +AG D+ +LT Sbjct: 122 KSNVLLLGPTGTGKTLLAQTLARLLNVPFAIADATTLTEAGYVGDDVENVLTRLIQAANY 181 Query: 102 NLED--RDVLFIDEIHRLS 118 N+E+ +++IDEI +++ Sbjct: 182 NVEEASHGIIYIDEIDKIA 200 >gi|228919016|ref|ZP_04082396.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228956507|ref|ZP_04118304.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|229107752|ref|ZP_04237389.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock1-15] gi|229125583|ref|ZP_04254616.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-Cer4] gi|229142872|ref|ZP_04271314.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST24] gi|228640584|gb|EEK96972.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST24] gi|228657900|gb|EEL13705.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-Cer4] gi|228675725|gb|EEL30932.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock1-15] gi|228803197|gb|EEM50018.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228840665|gb|EEM85926.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 612 Score = 42.4 bits (98), Expect = 0.100, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236 Query: 109 LFIDEI 114 +FIDEI Sbjct: 237 IFIDEI 242 >gi|329119329|ref|ZP_08248015.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327464474|gb|EGF10773.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 422 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 110 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 169 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 EKAQRGIVYIDEIDKIS 186 >gi|315645732|ref|ZP_07898856.1| hypothetical protein PVOR_09650 [Paenibacillus vortex V453] gi|315279210|gb|EFU42520.1| hypothetical protein PVOR_09650 [Paenibacillus vortex V453] Length = 588 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T+++ GQ + LK + +A + HV+ GPPG+GKT A+VV E N Sbjct: 64 RPQTMDDIVGQKDGLRALKAALCSANPQ-----HVIVYGPPGVGKTAAARVVMEEAKKNP 118 Query: 83 RS 84 +S Sbjct: 119 QS 120 >gi|298369174|ref|ZP_06980492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sp. oral taxon 014 str. F0314] gi|298283177|gb|EFI24664.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sp. oral taxon 014 str. F0314] Length = 424 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 112 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 171 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 172 EKAQRGIVYIDEIDKIS 188 >gi|284046734|ref|YP_003397074.1| DNA polymerase III subunits gamma and tau [Conexibacter woesei DSM 14684] gi|283950955|gb|ADB53699.1| DNA polymerase III, subunits gamma and tau [Conexibacter woesei DSM 14684] Length = 724 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 28/218 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPRT + GQ L+ +E R + LFVG G GKT++A+++A L Sbjct: 12 RPRTFSDVVGQTHVVRTLRNAVE----RDKVHHAYLFVGSRGTGKTSMAKILAACLNCE- 66 Query: 83 RSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQLD 135 GP I G ++ ++ N DV+ +D S+ + +++ Y + Sbjct: 67 --RGGPTIEPCGVCSSCVSIANATSLDVIEMDAASNNSVDDIRELRDKVAYAPVSGRYKV 124 Query: 136 LMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNFY--E 184 ++ E S N TL + ATT + + DR R +F Sbjct: 125 YILDEAHMLSSAAWNAFLKTLEEPPPHTIFVLATTEANKVLPTVVDRCH---RFDFTRPN 181 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 +E++ +++R A +A+ D+A +A + G+ R A Sbjct: 182 VEEIAGVLRRVADQESIAIPDQAVALVARHATGSFRDA 219 >gi|317153551|ref|YP_004121599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio aespoeensis Aspo-2] gi|316943802|gb|ADU62853.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio aespoeensis Aspo-2] Length = 416 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 32/144 (22%) Query: 7 LLSRNVSQEDADISLLRPRT----LEEFT-GQVEACSNL---------KVFIEAAKARAE 52 + VS+E D LL P+ L+E+ GQ +A L +VF AA + Sbjct: 45 MAQETVSEEFEDGRLLPPQEIKALLDEYVIGQEQAKKILSVAVHNHYKRVFYAAANTGPD 104 Query: 53 ALD----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALL 100 ++ ++L +GP G GKT LAQ +AR L V F + +AG L LL Sbjct: 105 EVEIDKSNILLIGPTGSGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLL 164 Query: 101 TNLE------DRDVLFIDEIHRLS 118 N + R +++IDEI +++ Sbjct: 165 QNADYDIDAASRGIIYIDEIDKVA 188 >gi|260187916|ref|ZP_05765390.1| Mg chelatase [Mycobacterium tuberculosis CPHL_A] Length = 549 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 87/343 (25%), Positives = 133/343 (38%), Gaps = 93/343 (27%) Query: 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ-------------- 72 L + GQ +A + +E A A A H++ GPPG+GKT LAQ Sbjct: 191 LADVVGQSQA----RFAVEVAAAGAH---HLMLTGPPGVGKTMLAQRLPGLLPSLSGSES 243 Query: 73 --VVARELGVNFRSTSGPVIAK--------AGDLAALL-----------TNLEDRDVLFI 111 V A S P+I + + +AAL+ + R VLF+ Sbjct: 244 LEVTAIHSVAGLLSGDTPLITRPPFVAPHHSSSVAALVGGGSGMARPGAVSRAHRGVLFL 303 Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI-------------- 157 DE +S+ E L +ED ++ L +G V +RF L+ Sbjct: 304 DECAEISLSALEALRTPLEDGEIRLARRDG-----VACYPARFQLVLAANPCPCAPADPQ 358 Query: 158 -----AATTR--VGLLTNPLQDRFGIPIRLN--------FYEIEDLKTIVQRGAKLTGLA 202 AAT R +G L+ PL DR + ++++ + E + QR +A Sbjct: 359 DCICAAATKRRYLGKLSGPLLDRVDLRVQMHRLRAGAFSAADGESTSQVRQR------VA 412 Query: 203 VTDEAACEIAMRSRG---TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259 + EAA + R G ++G LLR R F + A R D LL + G Sbjct: 413 LAREAAAQ-RWRPHGFRTNAEVSGPLLR--RKFRPSSAAMLPLRTALDRGLLSI----RG 465 Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302 D+ LR +A G GI+ ++A LS + +I+P Sbjct: 466 VDR-TLRVAWSLADLAGRTSPGIDEVAAALSFRQTGSTTMIDP 507 >gi|288930616|ref|YP_003434676.1| ATPase AAA, CDC48 subfamily [Ferroglobus placidus DSM 10642] gi|288892864|gb|ADC64401.1| AAA family ATPase, CDC48 subfamily [Ferroglobus placidus DSM 10642] Length = 791 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD----V 108 VL GPPG GKT +A+ VA E+ +F SGP I G+ L + E R+ + Sbjct: 216 VLLYGPPGTGKTLIAKAVANEVNAHFIPISGPEIMSKYYGESEQRLREIFEEARENAPSI 275 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 276 IFIDEIDSIAPKREEV 291 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E NF S GP Sbjct: 550 ILLYGPPGTGKTLLAKAVANESNANFISVKGP 581 >gi|228989273|ref|ZP_04149266.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus pseudomycoides DSM 12442] gi|228995456|ref|ZP_04155126.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus mycoides Rock3-17] gi|228764317|gb|EEM13194.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus mycoides Rock3-17] gi|228770483|gb|EEM19054.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus pseudomycoides DSM 12442] Length = 616 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 181 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 240 Query: 109 LFIDEI 114 +FIDEI Sbjct: 241 IFIDEI 246 >gi|218197842|gb|EEC80269.1| hypothetical protein OsI_22249 [Oryza sativa Indica Group] Length = 681 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ +A E GV F S SG + G A+ + +L DR + Sbjct: 252 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFDRPKASAPCL 311 Query: 109 LFIDEI 114 +FIDEI Sbjct: 312 VFIDEI 317 >gi|70951019|ref|XP_744784.1| replication factor C, subunit 2 [Plasmodium chabaudi chabaudi] gi|56524878|emb|CAH75042.1| replication factor C, subunit 2, putative [Plasmodium chabaudi chabaudi] Length = 330 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L++ Q A S LK I + + + H++F GPPG GKT+ +A EL Sbjct: 11 RPKKLDDIVHQTNAISMLKEVI-----KTKNMPHLIFHGPPGTGKTSAINALAHEL 61 >gi|46109186|ref|XP_381651.1| hypothetical protein FG01475.1 [Gibberella zeae PH-1] Length = 790 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 16/118 (13%) Query: 13 SQEDADISLLRPRT-LEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPG 64 S++D+++ + T ++ G EA L+ +E K + D VL VGPPG Sbjct: 291 SKQDSEVKAEKQNTRFQDVHGCDEAKEELQEVVEFLKNPEKFSDLGAKLPKGVLLVGPPG 350 Query: 65 LGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 GKT LA+ VA E GV F SG V A + L T +++ ++FIDE+ Sbjct: 351 TGKTLLARAVAGEAGVPFFYMSGSEFDEIFVGVGAKRVRELFTAAKNKSPAIVFIDEL 408 >gi|292491672|ref|YP_003527111.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4] gi|291580267|gb|ADE14724.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4] Length = 641 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 +L +GPPG GKT LA+ VA E GV F S SG + G AA + ++ E + Sbjct: 220 ILLMGPPGTGKTLLAKAVAGEAGVPFYSISGSDFIEMFVGVGAARVRDMFKAAKEEAPSI 279 Query: 109 LFIDEI 114 LFIDEI Sbjct: 280 LFIDEI 285 >gi|229148475|ref|ZP_04276732.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus m1550] gi|228635017|gb|EEK91589.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus m1550] Length = 585 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209 Query: 109 LFIDEI 114 +FIDEI Sbjct: 210 IFIDEI 215 >gi|220912905|ref|YP_002488214.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter chlorophenolicus A6] gi|254763831|sp|B8HA33|CLPX_ARTCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|219859783|gb|ACL40125.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrobacter chlorophenolicus A6] Length = 426 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ D Sbjct: 119 AKSNILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 178 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI ++S Sbjct: 179 YDVKKAEQGIIYIDEIDKIS 198 >gi|261403931|ref|YP_003240172.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. Y412MC10] gi|329925503|ref|ZP_08280377.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5] gi|261280394|gb|ACX62365.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. Y412MC10] gi|328939786|gb|EGG36126.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5] Length = 689 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 203 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262 Query: 109 LFIDEI 114 +FIDEI Sbjct: 263 IFIDEI 268 >gi|228970254|ref|ZP_04130914.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789489|gb|EEM37408.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 612 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236 Query: 109 LFIDEI 114 +FIDEI Sbjct: 237 IFIDEI 242 >gi|224088822|ref|XP_002308554.1| predicted protein [Populus trichocarpa] gi|222854530|gb|EEE92077.1| predicted protein [Populus trichocarpa] Length = 723 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L + + R + Sbjct: 268 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 327 Query: 109 LFIDEI 114 +FIDEI Sbjct: 328 IFIDEI 333 >gi|150014992|ref|YP_001307246.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] gi|149901457|gb|ABR32290.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] Length = 602 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E+ G E + L+ +E K ++ + VL VGPPG GKT LA+ +A E Sbjct: 157 TFEDIAGADEEKAELEEIVEFLKLPSKYIQIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 216 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 GV F S SG V A + +L + ++FIDEI Sbjct: 217 GVPFFSISGSDFVEMFVGVGASRVRSLFEEAKKNSPCIVFIDEI 260 >gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis carolinensis] Length = 342 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%) Query: 5 EGLLSRNVSQEDADISLL---RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 EG R V+ + A++ + RP+TL + + S ++ FI + L H+LF G Sbjct: 8 EGPSERTVAVKSANLPWVEKYRPQTLNDLISHQDILSTIQKFISEDR-----LPHLLFYG 62 Query: 62 PPGLGKTTLAQVVAREL 78 PPG GKT+ A++L Sbjct: 63 PPGTGKTSTILACAKQL 79 >gi|323465366|gb|ADX77519.1| cell division protein FtsH, putative [Staphylococcus pseudintermedius ED99] Length = 704 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|313247630|emb|CBY15796.1| unnamed protein product [Oikopleura dioica] Length = 500 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 36/174 (20%) Query: 20 SLLRPRTLEEFTGQVEA-CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 ++ RP + F+ +V++ ++K+ A +A +VL GPPG GKT A+ +A + Sbjct: 321 TVKRPNYI--FSEKVQSKVEDIKLVTRNALINKQAHRNVLLYGPPGTGKTLYAKSLATDA 378 Query: 79 GVNFRSTSGPVIAKAGDLAAL----LTNLEDRD----VLFIDEIHRLSIIVEEILYPAME 130 + + SG +A G A L N D+ VLFIDE E L P E Sbjct: 379 NMQYAIMSGGDVAPLGAQATYELNKLFNWADKSKKGLVLFIDE-------AEAFLRPRDE 431 Query: 131 DFQLDLMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFG 175 + P RSV IN ++ ++ AT +V L + + DR Sbjct: 432 NM--------SPELRSV-INTFLARTGEPSNKMQIVLATNQVNQLDSAVLDRMN 476 >gi|313201271|ref|YP_004039929.1| ATP-dependent clp protease, ATP-binding subunit clpx [Methylovorus sp. MP688] gi|312440587|gb|ADQ84693.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylovorus sp. MP688] Length = 423 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 26/113 (23%) Query: 32 GQVEACSNLKVFI---------EAAKARAE---ALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ +A NL V + A K + E A ++L +GP G GKT LAQ +AR L Sbjct: 78 GQTQAKKNLAVAVYNHYKRLDQSATKDKDEVEIAKSNILVIGPTGSGKTLLAQTLARLLD 137 Query: 80 VNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118 V F + +AG + + N+ R +++IDEI ++S Sbjct: 138 VPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDIEKAQRGIVYIDEIDKIS 190 >gi|301299480|ref|ZP_07205754.1| ATPase, AAA family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852914|gb|EFK80524.1| ATPase, AAA family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 246 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 18/77 (23%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFRST---------SGPVIAKAGDLAALLTNL 103 H++F GPPG GKTT+A++VAR LG+ +T G + GDL+ + Sbjct: 56 HMIFEGPPGTGKTTVARIVARLFYALGILENTTVVETKRNELEGKWV---GDLSGKINEK 112 Query: 104 EDR---DVLFIDEIHRL 117 D VLFIDE H+L Sbjct: 113 VDSALGGVLFIDEAHQL 129 >gi|229039971|ref|ZP_04189735.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH676] gi|228727379|gb|EEL78572.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH676] Length = 582 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 147 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 206 Query: 109 LFIDEI 114 +FIDEI Sbjct: 207 IFIDEI 212 >gi|114614482|ref|XP_001167033.1| PREDICTED: peroxisome biogenesis factor 1 isoform 1 [Pan troglodytes] Length = 1226 Score = 42.4 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 820 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 851 >gi|75116392|sp|Q67WJ2|FTSH6_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 6, chloroplastic; Short=OsFTSH6; Flags: Precursor gi|51535393|dbj|BAD37263.1| putative chloroplast protease [Oryza sativa Japonica Group] gi|51535559|dbj|BAD37477.1| putative chloroplast protease [Oryza sativa Japonica Group] Length = 686 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ +A E GV F S SG + G A+ + +L DR + Sbjct: 257 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFDRAKASAPCL 316 Query: 109 LFIDEI 114 +FIDEI Sbjct: 317 VFIDEI 322 >gi|14289171|dbj|BAB59061.1| Pex1p-634del690 [Homo sapiens] gi|119597248|gb|EAW76842.1| peroxisome biogenesis factor 1, isoform CRA_c [Homo sapiens] Length = 1226 Score = 42.4 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 820 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 851 >gi|642339|emb|CAA58229.1| peroxisome biogenesis invlved proteind [Saccharomyces cerevisiae] Length = 889 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F K R+ +LF GPPG GKT +A+ +A +NF S GP Sbjct: 615 ELFTSGMKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 658 >gi|326937857|gb|AEA13753.1| cell division protein ftsH [Bacillus thuringiensis serovar chinensis CT-43] Length = 633 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|295702308|ref|YP_003595383.1| cell division protease FtsH [Bacillus megaterium DSM 319] gi|294799967|gb|ADF37033.1| cell division protease FtsH [Bacillus megaterium DSM 319] Length = 636 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 200 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 259 Query: 109 LFIDEI 114 +FIDEI Sbjct: 260 IFIDEI 265 >gi|312195812|ref|YP_004015873.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp. EuI1c] gi|311227148|gb|ADP80003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp. EuI1c] Length = 430 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 35/133 (26%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFI---------------EAAKARAE-ALDHVLF 59 L +PR + EF GQ A L V + ++AKA E A ++L Sbjct: 61 LPKPREIYEFLDGYVVGQETAKKTLSVAVYNHYKRIQAGGSAPSDSAKADVELAKSNILL 120 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV---- 108 +GP G GKT LAQ +AR L V F + +AG D+ +L L D DV Sbjct: 121 LGPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180 Query: 109 ---LFIDEIHRLS 118 ++IDE+ +++ Sbjct: 181 TGIIYIDEVDKIA 193 >gi|225012270|ref|ZP_03702707.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria bacterium MS024-2A] gi|225003825|gb|EEG41798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria bacterium MS024-2A] Length = 411 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 32/142 (22%) Query: 9 SRNVSQEDADISLLRPRTLEEF-----TGQ--------VEACSNLKVFIEAAKARAE--- 52 S + + E I L P+ ++ F GQ V ++ K ++ A + Sbjct: 45 SSDTTSEQVQIELKPPKEIKAFLDTYVIGQESSKRVLSVAVYNHYKRLVQTASKKENDPV 104 Query: 53 --ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL--- 103 +VL VGP G GKT LAQ ++R L V V+ +AG D+ ++L+ L Sbjct: 105 EIQKSNVLIVGPTGTGKTLLAQTISRLLNVPLAIVDATVLTEAGYVGEDVESILSRLLQA 164 Query: 104 EDRDV-------LFIDEIHRLS 118 D DV +FIDEI +++ Sbjct: 165 SDYDVDRAQKGIVFIDEIDKIA 186 >gi|212703544|ref|ZP_03311672.1| hypothetical protein DESPIG_01589 [Desulfovibrio piger ATCC 29098] gi|212673044|gb|EEB33527.1| hypothetical protein DESPIG_01589 [Desulfovibrio piger ATCC 29098] Length = 668 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +E + VE SN K F + VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 167 DELSEVVEFLSNPKKFTRLGGRIPKG---VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223 >gi|145613239|ref|XP_001412726.1| hypothetical protein MGG_11141 [Magnaporthe oryzae 70-15] gi|145020358|gb|EDK04487.1| hypothetical protein MGG_11141 [Magnaporthe oryzae 70-15] Length = 808 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 42/195 (21%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83 FI K R +L FVGPPG+GKT++ + +AR L + R Sbjct: 584 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFSVGGLTDVAEIKGHRR 643 Query: 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLD 135 + G + + + AL + ++ IDEI ++ S + E+L P LD Sbjct: 644 TYVGALPGRV--IQALKKCNTENPLILIDEIDKMGSGYKGDPSSALLELLDPEQNSSFLD 701 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR- 194 + V ++LS+ + + PL DR + IRL+ Y ++ I QR Sbjct: 702 HYM-------DVPVDLSKVLFVCTANMTDTIPRPLLDRMEV-IRLSGYVSDEKMAIAQRY 753 Query: 195 ----GAKLTGLAVTD 205 +L GL D Sbjct: 754 LAPAAKELAGLEKAD 768 >gi|50955660|ref|YP_062948.1| cell division protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952142|gb|AAT89843.1| cell division protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 667 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 36/69 (52%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNL---KVFI-EAAKARAEAL---DHVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA L K F+ E AK +A VL GPPG GKT LA+ VA E Sbjct: 162 TFEDVAGSDEAIEELEEIKDFLKEPAKFQAVGARIPKGVLLYGPPGTGKTLLARAVAGEA 221 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 222 GVPFYSISG 230 >gi|15612648|ref|NP_240951.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus halodurans C-125] gi|10172697|dbj|BAB03804.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus halodurans C-125] Length = 657 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 195 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 254 Query: 109 LFIDEI 114 +FIDEI Sbjct: 255 IFIDEI 260 >gi|47570189|ref|ZP_00240843.1| cell division protein FtsH [Bacillus cereus G9241] gi|47553133|gb|EAL11530.1| cell division protein FtsH [Bacillus cereus G9241] Length = 633 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|319891464|ref|YP_004148339.1| Cell division protein FtsH [Staphylococcus pseudintermedius HKU10-03] gi|317161160|gb|ADV04703.1| Cell division protein FtsH [Staphylococcus pseudintermedius HKU10-03] Length = 704 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|313237893|emb|CBY13021.1| unnamed protein product [Oikopleura dioica] Length = 690 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 32/157 (20%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVN-FRSTSGP------------ 88 FI ++ R +L F GPPG GKT++A+ +AR LG +R + G Sbjct: 253 FICTSQLRGSVQGKILCFHGPPGTGKTSIAKSIARSLGRKYYRFSVGGMSDVAEIKGHRR 312 Query: 89 --VIAKAGDLAALLTNLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137 V A G L L E + ++ IDEI +L S + E+L P LD Sbjct: 313 TYVGAMPGKLVQCLKKTESENPLILIDEIDKLGRGYQGDPSSALLELLDPEQNVGFLDHY 372 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174 + V I+LS+ I + ++ PL+DR Sbjct: 373 L-------DVPIDLSKALFICTANDLSTISGPLRDRM 402 >gi|325110829|ref|YP_004271897.1| ATPase associated with various cellular activities AAA_3 [Planctomyces brasiliensis DSM 5305] gi|324971097|gb|ADY61875.1| ATPase associated with various cellular activities AAA_3 [Planctomyces brasiliensis DSM 5305] Length = 324 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 24/157 (15%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106 H+L PGLGKTTLA+ +A LG F R P + + L N + + Sbjct: 50 HLLLEDQPGLGKTTLAKALAAGLGEQFARVQCTPDLLPSDVTGFNLFNQKSQEFEFREGP 109 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 DVL DEI+R + + L AM + Q+ L P + + F +IA V Sbjct: 110 VFADVLLADEINRATPRTQSALLEAMAERQVTLDTKRYPLSET-------FFVIATQNPV 162 Query: 164 GLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRG 195 T PL DRF + + + + ED ++ RG Sbjct: 163 EQHGTYPLPEAQLDRFAMKLSIGYAAAEDEVAMLDRG 199 >gi|297616334|ref|YP_003701493.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus DSM 12680] gi|297144171|gb|ADI00928.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus DSM 12680] Length = 600 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE +E N + FI+ A+ VL GPPG GKT +A+ VA E GV F S SG Sbjct: 167 EELQEVIEFLKNPQKFIQMG---AKIPKGVLLYGPPGTGKTLMARAVAGEAGVPFFSISG 223 Query: 88 P------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 V A + L N + ++FIDEI Sbjct: 224 SDFVEMFVGVGAARVRDLFENAKKNAPCIVFIDEI 258 >gi|322418779|ref|YP_004198002.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18] gi|320125166|gb|ADW12726.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18] Length = 619 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 +L VGPPG GKT LA+ VA E GVNF + S V A + L N + + Sbjct: 211 ILLVGPPGTGKTLLARAVAGEAGVNFFTISASQFIEMFVGVGASRVRDLFANAKKGAPSI 270 Query: 109 LFIDEI 114 +FIDEI Sbjct: 271 IFIDEI 276 >gi|253999169|ref|YP_003051232.1| ATP-dependent protease ATP-binding subunit ClpX [Methylovorus sp. SIP3-4] gi|253985848|gb|ACT50705.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylovorus sp. SIP3-4] Length = 423 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 26/113 (23%) Query: 32 GQVEACSNLKVFI---------EAAKARAE---ALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ +A NL V + A K + E A ++L +GP G GKT LAQ +AR L Sbjct: 78 GQTQAKKNLAVAVYNHYKRLDQSATKDKDEVEIAKSNILVIGPTGSGKTLLAQTLARLLD 137 Query: 80 VNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118 V F + +AG + + N+ R +++IDEI ++S Sbjct: 138 VPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDIEKAQRGIVYIDEIDKIS 190 >gi|255727949|ref|XP_002548900.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404] gi|240133216|gb|EER32772.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404] Length = 825 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRDV---- 108 VL GPPG GKTTLA +A EL V F + S P I +G+ L +L E + V Sbjct: 230 VLLYGPPGCGKTTLANALAGELKVPFFNISAPSIVSGMSGESEKKLRDLFEEAKSVAPCL 289 Query: 109 LFIDEIHRLS 118 +F+DEI ++ Sbjct: 290 IFMDEIDAIT 299 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 559 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 590 >gi|229824776|ref|ZP_04450845.1| hypothetical protein GCWU000182_00125 [Abiotrophia defectiva ATCC 49176] gi|229791105|gb|EEP27219.1| hypothetical protein GCWU000182_00125 [Abiotrophia defectiva ATCC 49176] Length = 515 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 16/108 (14%) Query: 27 LEEFTGQVEACSNLKVFIEAAKARA----EALDHVLFVGPPGLGKTTLAQVVA---RELG 79 LEE +V + NL + K + + H++F G PG GKTT+A+++A +ELG Sbjct: 262 LEEVKNEVNSLINLINIRQLRKKKGLPSPDMSYHMVFTGSPGTGKTTVARLIASIYKELG 321 Query: 80 VNFR------STSGPVIAKAGDLAALLTNLEDR---DVLFIDEIHRLS 118 V + SG V G A +T + ++ VLFIDE + LS Sbjct: 322 VLSKGGLIEVDRSGLVAGYVGQTALKVTEVVNKALGGVLFIDEAYSLS 369 >gi|269214372|ref|ZP_05986447.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria lactamica ATCC 23970] gi|269209943|gb|EEZ76398.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria lactamica ATCC 23970] Length = 442 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 142 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 201 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 202 EKAQRGIVYIDEIDKIS 218 >gi|256383978|gb|ACU78548.1| peptidase, M41 family [Mycoplasma mycoides subsp. capri str. GM12] gi|256384810|gb|ACU79379.1| peptidase, M41 family [Mycoplasma mycoides subsp. capri str. GM12] gi|296455408|gb|ADH21643.1| peptidase, M41 family [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 648 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 33/60 (55%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE + VE LK + A A A A VL GPPG GKT LA+ VA E V+F S +G Sbjct: 177 EEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAG 236 >gi|171186425|ref|YP_001795344.1| AAA family ATPase, CDC48 subfamily protein [Thermoproteus neutrophilus V24Sta] gi|170935637|gb|ACB40898.1| AAA family ATPase, CDC48 subfamily [Thermoproteus neutrophilus V24Sta] Length = 731 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E G NF + GP I G+ ++ + + V Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMAAPAV 550 Query: 109 LFIDEIHRLS 118 +FIDEI L+ Sbjct: 551 IFIDEIDALA 560 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 16/115 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ +A ++ +E E H +L +GPPG GKT LA+ VA E Sbjct: 177 TWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAVANE 236 Query: 78 LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 F + +GP I G+ A L + + ++FIDEI ++ EE+ Sbjct: 237 ANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 291 >gi|156391074|ref|XP_001635594.1| predicted protein [Nematostella vectensis] gi|156222689|gb|EDO43531.1| predicted protein [Nematostella vectensis] Length = 285 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/28 (67%), Positives = 21/28 (75%) Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGP 88 GPPG GKT LA VVA+E G+NF S GP Sbjct: 106 GPPGTGKTLLAGVVAKECGLNFISIKGP 133 >gi|170740232|ref|YP_001768887.1| ATPase central domain-containing protein [Methylobacterium sp. 4-46] gi|168194506|gb|ACA16453.1| AAA ATPase central domain protein [Methylobacterium sp. 4-46] Length = 664 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 92/229 (40%), Gaps = 60/229 (26%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRST----SGPVIAK------AGDLAALLTNLED 105 H++F GPPG+GKT VAR LG FR G ++ AG + T D Sbjct: 443 HMVFTGPPGVGKTQ----VARALGEIFRGVGVLRKGHLVETDRAGLVAGYVGQTATKTLD 498 Query: 106 R------DVLFIDEIHRLSIIVE---------EILYPAMEDF--QLDLMVGEGPSARSVK 148 + +LFIDE + L+ E + L MED ++ ++V PS Sbjct: 499 KCKEALDGILFIDEAYALADGQEGGSFGREAIDTLLKFMEDHRDRIIVIVAGYPS----- 553 Query: 149 INLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207 + RF + TNP L RF I Y + +L+ I++R A A+ D Sbjct: 554 -EMRRF----------IGTNPGLASRFTKTIDFPAYSVAELEEILRRMAAAQAYALPDPL 602 Query: 208 ACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADAALLRLA 254 PR++G L R D+ +T+ +A +RLA Sbjct: 603 G----------PRLSGWLAENARREDWGNARAMRTLLERAREAQAVRLA 641 >gi|197117001|ref|YP_002137428.1| ATP-dependent Lon protease [Geobacter bemidjiensis Bem] gi|197086361|gb|ACH37632.1| ATP-dependent Lon protease (La) [Geobacter bemidjiensis Bem] Length = 816 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 49/219 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNLE 104 + FVGPPG+GKT+L + +AR +G F R + G V +A G L ++ L+ Sbjct: 359 LCFVGPPGVGKTSLGKSIARAMGRKFVRISLGGVRDEAEIRGHRRTYVGALPGRIIQGLK 418 Query: 105 ----DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + V +DE+ +L S + E+L P + D + ++ NLS Sbjct: 419 QAGSNNPVFMLDELDKLGSDFRGDPSSALLEVLDPEQNNSFSDHYI-------NLPFNLS 471 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGL-----A 202 IA ++ + PL+DR + I L+ Y E+ + +V R K G+ A Sbjct: 472 NVMFIATANQMDTIPGPLRDRMEV-INLSGYTEEEKLGIAKRYLVPRQVKENGITDDIVA 530 Query: 203 VTDEAACEIAMRS------RGTPRIAGRLLRRV-RDFAE 234 +DEA + + R R G + R+V R AE Sbjct: 531 FSDEALRTVISKYTREAGLRNLEREVGSICRKVARKVAE 569 >gi|152973913|ref|YP_001373430.1| ATP-dependent metalloprotease FtsH [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022665|gb|ABS20435.1| ATP-dependent metalloprotease FtsH [Bacillus cytotoxicus NVH 391-98] Length = 639 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|312213191|emb|CBX93273.1| similar to AAA ATPase central domain protein [Leptosphaeria maculans] Length = 541 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP L++ GQ V L+ ++ K L ++ G PG GKTT+A+++A G Sbjct: 129 MRPSALDQVYGQELVAPGGVLRGMVDEGK-----LPSMVLWGRPGTGKTTIARLIANTSG 183 Query: 80 ---VNFRSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 V STS + A ++L+ + ++F DE+HR S ++ +E Sbjct: 184 ARYVEINSTSTKLEQVRKIFAEAASDLQLTGRKTIVFCDELHRFSKTQQDAFLGPVESGT 243 Query: 134 LDLMVG--EGPSARSVKINLSR---FTL 156 + L+ E PS + + LSR FTL Sbjct: 244 ITLIAATTENPSFKVISALLSRCRTFTL 271 >gi|302342890|ref|YP_003807419.1| ATP-dependent protease La [Desulfarculus baarsii DSM 2075] gi|301639503|gb|ADK84825.1| ATP-dependent protease La [Desulfarculus baarsii DSM 2075] Length = 798 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 75/178 (42%), Gaps = 45/178 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLED 105 + FVGPPG+GKT+LA+ +AR +G F R + G V +A G L + Sbjct: 344 LCFVGPPGVGKTSLARSIARAMGRKFIRLSLGGVRDEAEIRGHRRTYIGALPGKIIQSMR 403 Query: 106 R-----DVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 R V +DE+ ++S + E+L P A D LD V Sbjct: 404 RVGSVNPVFCLDEVDKMSTDFRGDPSAALLEVLDPEQNYAFNDHYLD-----------VD 452 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDLKTIVQ----RGAKLTGL 201 NLS I + + PLQDR I IRL Y E+E + Q + AK GL Sbjct: 453 YNLSEVLFITTANTLYSIPAPLQDRMEI-IRLAGYTELEKVSIARQFLLPKQAKAHGL 509 >gi|294496941|ref|YP_003560641.1| cell division protease FtsH [Bacillus megaterium QM B1551] gi|294346878|gb|ADE67207.1| cell division protease FtsH [Bacillus megaterium QM B1551] Length = 636 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 200 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 259 Query: 109 LFIDEI 114 +FIDEI Sbjct: 260 IFIDEI 265 >gi|288924700|ref|ZP_06418637.1| cell division protein FtsH [Prevotella buccae D17] gi|288338487|gb|EFC76836.1| cell division protein FtsH [Prevotella buccae D17] Length = 690 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 29/183 (15%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E GV F S SG V A + L +++ ++ Sbjct: 230 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKAPCII 289 Query: 110 FIDEIH-------RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 FIDEI + S++ + L M G G + S ++AAT R Sbjct: 290 FIDEIDAVGRARAKNSMMNGNSEQENTLNALLTEMDGFGTN--------SGVIILAATNR 341 Query: 163 VGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 V +L L RF I ++ ++ + K I Q L + V D + +I + +R TP Sbjct: 342 VDMLDAALLRAGRFDRQIHVDLPDLNERKEIFQ--VHLKPVKVDD--SVDIDLLARQTPG 397 Query: 221 IAG 223 +G Sbjct: 398 FSG 400 >gi|283852374|ref|ZP_06369644.1| ATP-dependent protease La [Desulfovibrio sp. FW1012B] gi|283572222|gb|EFC20212.1| ATP-dependent protease La [Desulfovibrio sp. FW1012B] Length = 819 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 82/196 (41%), Gaps = 50/196 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+LA+ +A+ +G F R + G V +A G + L Sbjct: 364 LCLVGPPGVGKTSLAKSIAKAMGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 423 Query: 102 NLE-DRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ + V +DE+ ++S + E+L P A D LDL Sbjct: 424 RVKFNNPVFCLDEVDKMSTDFRGDPSSALLEVLDPEQNYAYNDHYLDL-----------D 472 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198 +LS+ I + + PLQDR I IR+ Y E E K I Q G K Sbjct: 473 YDLSKIFFITTANSLHSIPLPLQDRMEI-IRIPGYLETEKSQIGRRFLLPKNIEQHGLKD 531 Query: 199 TGLAVTDEAACEIAMR 214 L+ +EA E+ R Sbjct: 532 ENLSFDEEALLEVIRR 547 >gi|282897116|ref|ZP_06305118.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] gi|281197768|gb|EFA72662.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] Length = 628 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L +D + Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 IFIDEI 274 >gi|228976824|ref|ZP_04137237.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis Bt407] gi|228782920|gb|EEM31085.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis Bt407] Length = 582 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 147 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 206 Query: 109 LFIDEI 114 +FIDEI Sbjct: 207 IFIDEI 212 >gi|229083384|ref|ZP_04215734.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-44] gi|228699920|gb|EEL52555.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-44] Length = 633 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|256827871|ref|YP_003156599.1| ATP-dependent protease La [Desulfomicrobium baculatum DSM 4028] gi|256577047|gb|ACU88183.1| ATP-dependent protease La [Desulfomicrobium baculatum DSM 4028] Length = 804 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 104/239 (43%), Gaps = 54/239 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNLE 104 + FVGPPG+GKT+L + +AR LG F R + G + +A G + ++ +++ Sbjct: 380 LCFVGPPGVGKTSLGKSIARSLGRKFVRMSLGGMRDEAEIRGHRRTYIGAMPGRIIQSMK 439 Query: 105 D----RDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 D V+ +DEI +L S + E+L P + D + +V +LS Sbjct: 440 DAGTINPVIMLDEIDKLGNDFRGDPSSALLEVLDPEQNNSFTDHYL-------NVPYDLS 492 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-----------GL 201 + I + + + L DR + IR+ Y E KTI+ R LT L Sbjct: 493 KVMFICTANMLDTIPSALLDRMEV-IRIPGY-TEQEKTIIARRYLLTRQIKENGLTNDTL 550 Query: 202 AVTDEAACEIAMRSRGTPRIAG-RLLRR-----VRDFA-EVAHAKTITREIADAALLRL 253 ++D EI RG R AG R L R R +A VA K + +AL++L Sbjct: 551 IISDAVLAEII---RGYTREAGLRNLEREIGSICRKYARRVAEGKKGPFRVTTSALIKL 606 >gi|226356612|ref|YP_002786352.1| MoxR-like ATPase [Deinococcus deserti VCD115] gi|226318602|gb|ACO46598.1| putative MoxR-like ATPase [Deinococcus deserti VCD115] Length = 315 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 28/161 (17%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------- 105 H+L PG+GKTTLAQ +AR G++FR DL L ++ D Sbjct: 47 HLLIEDQPGVGKTTLAQALARTCGLHFRRVQFTSDLLPADL--LGVSIWDAGAATFRFQP 104 Query: 106 ----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161 +VL DEI+R + + L AME+ Q V EG R + F +IA Sbjct: 105 GPVFSEVLLADEINRATPRTQGALLEAMEERQ----VSEGGVTRPLP---DPFFVIATQN 157 Query: 162 RVGLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAK 197 + T+PL DRF + + L + + + +++ G + Sbjct: 158 PAAFVGTSPLPEAQLDRFLLTVTLGYPDPRAERNLLETGGR 198 >gi|253699261|ref|YP_003020450.1| ATP-dependent protease La [Geobacter sp. M21] gi|251774111|gb|ACT16692.1| ATP-dependent protease La [Geobacter sp. M21] Length = 817 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNLE 104 + FVGPPG+GKT+L + +AR +G F R + G V +A G L ++ L+ Sbjct: 359 LCFVGPPGVGKTSLGKSIARAMGRKFVRISLGGVRDEAEIRGHRRTYVGALPGRIIQGLK 418 Query: 105 ----DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + V +DE+ +L S + E+L P + D + ++ NLS Sbjct: 419 QAGSNNPVFMLDELDKLGSDFRGDPSSALLEVLDPEQNNSFSDHYI-------NLPFNLS 471 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 IA ++ + PL+DR + I L+ Y E+ I +R Sbjct: 472 NVMFIATANQMDTIPGPLRDRMEV-INLSGYTEEEKLGIAKR 512 >gi|119597250|gb|EAW76844.1| peroxisome biogenesis factor 1, isoform CRA_e [Homo sapiens] Length = 1284 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908 >gi|45357587|ref|NP_987144.1| ATPase [Methanococcus maripaludis S2] gi|45047147|emb|CAF29580.1| putative AAA superfamily ATPase, similar to FtsH [Methanococcus maripaludis S2] Length = 371 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARE 77 + T EE GQ++A K+ ++E + E A ++LF GPPG GKT LA+ +A E Sbjct: 120 FKETTFEEVVGQIDAKKKCKIVIKYLENPELFGEWAPKNILFYGPPGTGKTMLARALATE 179 Query: 78 LGV 80 V Sbjct: 180 TDV 182 >gi|1813473|gb|AAB41679.1| cell division protein [Bacillus firmus] Length = 679 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 202 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 261 Query: 109 LFIDEI 114 +FIDEI Sbjct: 262 IFIDEI 267 >gi|332206820|ref|XP_003252493.1| PREDICTED: LOW QUALITY PROTEIN: peroxisome biogenesis factor 1-like [Nomascus leucogenys] Length = 1283 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908 >gi|331703056|ref|YP_004399743.1| ATP dependent zinc metallopeptidase FtsH [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801611|emb|CBW53764.1| ATP dependent zinc metallopeptidase FtsH [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 648 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 33/60 (55%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE + VE LK + A A A A VL GPPG GKT LA+ VA E V+F S +G Sbjct: 177 EEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAG 236 >gi|323331879|gb|EGA73291.1| Mgs1p [Saccharomyces cerevisiae AWRI796] Length = 360 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 19/106 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVN----------FRSTSGPVIAKAGDLAALLTNLED- 105 ++ GPPG+GKT+LA+++ + + F + A +L + + Sbjct: 1 MILWGPPGVGKTSLARLLTKTATTSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKE 60 Query: 106 ------RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPS 143 R VLFIDEIHR + + +++L P +E+ + L+ E PS Sbjct: 61 YQLTKRRTVLFIDEIHRFNKVQQDLLLPHVENGDIILIGATTENPS 106 >gi|319942796|ref|ZP_08017098.1| hypothetical protein HMPREF9464_02317 [Sutterella wadsworthensis 3_1_45B] gi|319803606|gb|EFW00562.1| hypothetical protein HMPREF9464_02317 [Sutterella wadsworthensis 3_1_45B] Length = 807 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 3/100 (3%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNF 82 TL++F+ Q E S L +++ A A +VL GPPG GKT LA+++A+E G Sbjct: 330 TLKDFSHQPEIESYLLPYLKKALAEHRQGVNVLLYGPPGTGKTELARLLAKETGSALYEV 389 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122 SGP D LT + LF + + ++ E Sbjct: 390 SPKSGPDNGYRSDKNNRLTRWHCGERLFANTSQTMLLLDE 429 >gi|229009575|ref|ZP_04166802.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus mycoides DSM 2048] gi|229053912|ref|ZP_04195347.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH603] gi|229131073|ref|ZP_04259986.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST196] gi|229165054|ref|ZP_04292850.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH621] gi|228618439|gb|EEK75468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH621] gi|228652410|gb|EEL08334.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST196] gi|228721453|gb|EEL72973.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH603] gi|228751719|gb|EEM01518.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus mycoides DSM 2048] Length = 612 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236 Query: 109 LFIDEI 114 +FIDEI Sbjct: 237 IFIDEI 242 >gi|241958554|ref|XP_002421996.1| ATP-dependent protease, mitochondrial precursor, putative [Candida dubliniensis CD36] gi|300681031|sp|B9WLN5|LONM_CANDC RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor gi|223645341|emb|CAX39997.1| ATP-dependent protease, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 1073 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 98/254 (38%), Gaps = 53/254 (20%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGP------------ 88 FI K +L GPPG GKT++A+ +A L + R G Sbjct: 524 FISVGKISGNVDGRILCLAGPPGTGKTSIAKSIAEALNRKYTRIAVGGVQDVHDVKGHRR 583 Query: 89 --VIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137 V + G + LT + + ++ IDEI +L EIL P + +D Sbjct: 584 TYVASIPGRIVTALTQAKTSNPLMLIDEIDKLDTTSHGGAARAFLEILDPEQNNSFVDNF 643 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194 + VK++LS+ + +G + PL+DR I I +N Y D I +R Sbjct: 644 I-------EVKVDLSKVLFVCTANYLGSIPAPLRDRMEI-IEVNGYTKNDKIEITKRHLI 695 Query: 195 --GAKLTGL-----AVTDEAACEIA---MRSRG-------TPRIAGRLLRRVRDFAEVAH 237 AK GL + DE + R G RI + R++ + E Sbjct: 696 PAAAKKVGLEEGRVVIPDETILRLIDKYCRESGLRHIKSLINRIFSKASRKIVEELEDTD 755 Query: 238 AKTITREIADAALL 251 A +REI + +L+ Sbjct: 756 ADPHSREIVEESLV 769 >gi|126460414|ref|YP_001056692.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum calidifontis JCM 11548] gi|126250135|gb|ABO09226.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum calidifontis JCM 11548] Length = 736 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 17/118 (14%) Query: 24 PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 P+ E G +E A ++ +E E H +L +GPPG GKT LA+ V Sbjct: 172 PKVTWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 231 Query: 75 ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 A E F + +GP I G+ A L + + ++FIDEI ++ EE+ Sbjct: 232 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 289 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG+GKT A+ VA E G NF + GP Sbjct: 502 ILLFGPPGVGKTLFAKAVATESGANFIAVRGP 533 >gi|114614480|ref|XP_519198.2| PREDICTED: peroxisome biogenesis factor 1 isoform 2 [Pan troglodytes] Length = 1283 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908 >gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio] gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio] Length = 334 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ + S ++ FI + L H+LF GPPG GKT+ AR+L Sbjct: 21 RPQTLDDLISHQDILSTIQKFISEDR-----LPHLLFYGPPGTGKTSTILACARQL 71 >gi|30018336|ref|NP_829967.1| cell division protein ftsH [Bacillus cereus ATCC 14579] gi|218234053|ref|YP_002364915.1| cell division protein FtsH [Bacillus cereus B4264] gi|296500898|ref|YP_003662598.1| cell division protein FtsH [Bacillus thuringiensis BMB171] gi|29893876|gb|AAP07168.1| Cell division protein ftsH [Bacillus cereus ATCC 14579] gi|218162010|gb|ACK62002.1| cell division protein FtsH [Bacillus cereus B4264] gi|296321950|gb|ADH04878.1| cell division protein ftsH [Bacillus thuringiensis BMB171] Length = 633 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|14289175|dbj|BAB59063.1| Pex1pG843D [Homo sapiens] Length = 1283 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908 >gi|305667604|ref|YP_003863891.1| DNA polymerase III subunit gamma/tau [Maribacter sp. HTCC2170] gi|88709654|gb|EAR01887.1| DNA polymerase III subunit gamma/tau [Maribacter sp. HTCC2170] Length = 614 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 98/248 (39%), Gaps = 61/248 (24%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80 RP+T ++ GQ + L IE A+AL LF GP G+GKTT A+++A+++ Sbjct: 19 RPQTFKDVVGQQAITNTLLNAIEHNHL-AQAL---LFCGPRGVGKTTCARILAKQINQDG 74 Query: 81 ------NFRSTSGPVIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVEEI 124 +F + A + + + NL D+ V IDE+H LS Sbjct: 75 TEREDEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGKYKVYIIDEVHMLS------ 128 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 F L E P ++ I ATT + IP L+ + Sbjct: 129 ----QSAFNAFLKTLEEPPKHAI--------FILATTEKHKI---------IPTILSRCQ 167 Query: 185 IEDLKTIVQRG--------AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236 I D K I + AK G+ D+A IA ++ G R A + RV F+ Sbjct: 168 IFDFKRITVKDAAEYLKYIAKNQGIVADDDALHIIAQKADGAMRDALSIFDRVVSFS--- 224 Query: 237 HAKTITRE 244 K +TR+ Sbjct: 225 -GKNLTRK 231 >gi|311029001|ref|ZP_07707091.1| cell division protease FtsH [Bacillus sp. m3-13] Length = 644 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 200 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 259 Query: 109 LFIDEI 114 +FIDEI Sbjct: 260 IFIDEI 265 >gi|307719319|ref|YP_003874851.1| hypothetical protein STHERM_c16380 [Spirochaeta thermophila DSM 6192] gi|306533044|gb|ADN02578.1| hypothetical protein STHERM_c16380 [Spirochaeta thermophila DSM 6192] Length = 790 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 41/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVN-FRSTSG--------------PVIAKAGDLAALLT 101 + VGPPG+GKT++ + +AR LG FR + G + A G + L Sbjct: 358 ICLVGPPGVGKTSIGKSIARALGRKFFRFSVGGMRDEAEIKGHRRTYIGAMPGKIIQGLK 417 Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ ++ +F IDEI +L + + E+L P A D LD V Sbjct: 418 IVKTKNPVFMIDEIDKLGVSFQGDPASALLEVLDPEQNVAFRDHYLD-----------VP 466 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++S+ IA + + PL DR + IRL+ Y IE+ K + R Sbjct: 467 FDISKVLFIATANTLDTIPRPLLDRMEV-IRLSGY-IEEEKIAIAR 510 >gi|261392354|emb|CAX49892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria meningitidis 8013] Length = 414 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|255724454|ref|XP_002547156.1| peroxisomal biogenesis factor 6 [Candida tropicalis MYA-3404] gi|240135047|gb|EER34601.1| peroxisomal biogenesis factor 6 [Candida tropicalis MYA-3404] Length = 1150 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 869 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 900 >gi|229067830|ref|ZP_04201148.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus F65185] gi|228715314|gb|EEL67172.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus F65185] Length = 612 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236 Query: 109 LFIDEI 114 +FIDEI Sbjct: 237 IFIDEI 242 >gi|229170916|ref|ZP_04298519.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus MM3] gi|228612582|gb|EEK69801.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus MM3] Length = 612 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236 Query: 109 LFIDEI 114 +FIDEI Sbjct: 237 IFIDEI 242 >gi|222152145|ref|YP_002561305.1| cell-division protein [Macrococcus caseolyticus JCSC5402] gi|222121274|dbj|BAH18609.1| cell-division protein [Macrococcus caseolyticus JCSC5402] Length = 690 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 264 Query: 109 LFIDEI 114 +FIDEI Sbjct: 265 IFIDEI 270 >gi|218895201|ref|YP_002443612.1| cell division protein FtsH [Bacillus cereus G9842] gi|228898819|ref|ZP_04063102.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis IBL 4222] gi|218542807|gb|ACK95201.1| cell division protein FtsH [Bacillus cereus G9842] gi|228860844|gb|EEN05221.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis IBL 4222] Length = 633 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|163841991|ref|YP_001626396.1| ATP-dependent protease ATP-binding subunit ClpX [Renibacterium salmoninarum ATCC 33209] gi|189044144|sp|A9WUW1|CLPX_RENSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|162955467|gb|ABY24982.1| ATP-dependent endopeptidase clp ATP-binding subunit [Renibacterium salmoninarum ATCC 33209] Length = 427 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ D Sbjct: 117 AKSNILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 176 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI ++S Sbjct: 177 YDVKKAEQGIIYIDEIDKIS 196 >gi|158259371|dbj|BAF85644.1| unnamed protein product [Homo sapiens] Length = 1283 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908 >gi|18977335|ref|NP_578692.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638] gi|18893012|gb|AAL81087.1| cell division control protein 48, aaa family [Pyrococcus furiosus DSM 3638] Length = 837 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 16/116 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G EA ++ +E E + VL GPPG GKT LA+ VA E Sbjct: 207 TYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 266 Query: 78 LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125 F + +GP I G+ L + E+ ++FIDEI ++ EE++ Sbjct: 267 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVV 322 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E NF + GP + Sbjct: 581 ILLYGPPGTGKTLLAKAVATESQANFIAIRGPEV 614 >gi|21226355|ref|NP_632277.1| replication factor C large subunit [Methanosarcina mazei Go1] gi|42559489|sp|Q8Q084|RFCL_METMA RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|20904606|gb|AAM29949.1| replication factor C subunit [Methanosarcina mazei Go1] Length = 610 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 7/103 (6%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR----- 76 RPRTL + G +A +L+ + E ++ V+ GP G+GKT+ A +A Sbjct: 16 YRPRTLGDVVGNRKAVQDLRKWAEEWQSGIPEKRAVILYGPAGIGKTSSAHALAGDMEWE 75 Query: 77 --ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 EL + + T+G + AG A++ T + ++ +DE L Sbjct: 76 VIELNASDQRTAGVIEKIAGSAASMNTFFGGKRLIILDEADNL 118 >gi|14289173|dbj|BAB59062.1| Pex1pL664P [Homo sapiens] Length = 1283 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908 >gi|17231134|ref|NP_487682.1| cell division protein [Nostoc sp. PCC 7120] gi|17132775|dbj|BAB75341.1| cell division protein [Nostoc sp. PCC 7120] Length = 628 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L +D + Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 IFIDEI 274 >gi|4505725|ref|NP_000457.1| peroxisome biogenesis factor 1 [Homo sapiens] gi|8134613|sp|O43933|PEX1_HUMAN RecName: Full=Peroxisome biogenesis factor 1; AltName: Full=Peroxin-1; AltName: Full=Peroxisome biogenesis disorder protein 1 gi|2655141|gb|AAB87880.1| peroxisome biogenesis disorder protein 1 [Homo sapiens] gi|2827156|gb|AAB99758.1| peroxisome biogenesis gene 1 [Homo sapiens] gi|6015438|dbj|BAA85162.1| PEX1 [Homo sapiens] gi|23242696|gb|AAH35575.1| Peroxisomal biogenesis factor 1 [Homo sapiens] gi|51094904|gb|EAL24149.1| peroxisome biogenesis factor 1 [Homo sapiens] gi|119597246|gb|EAW76840.1| peroxisome biogenesis factor 1, isoform CRA_a [Homo sapiens] gi|123980036|gb|ABM81847.1| peroxisome biogenesis factor 1 [synthetic construct] Length = 1283 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908 >gi|323484459|ref|ZP_08089825.1| hypothetical protein HMPREF9474_01576 [Clostridium symbiosum WAL-14163] gi|323692475|ref|ZP_08106709.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium symbiosum WAL-14673] gi|323402237|gb|EGA94569.1| hypothetical protein HMPREF9474_01576 [Clostridium symbiosum WAL-14163] gi|323503472|gb|EGB19300.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium symbiosum WAL-14673] Length = 433 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 28/128 (21%) Query: 19 ISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGPPG 64 I+LL+P+ ++EF GQ EA L V + R + ++L +GP G Sbjct: 62 INLLKPKEIKEFLDEYVVGQDEAKKVLSVAVYNHYKRITSKGTQEVELQKSNILMLGPTG 121 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLF 110 GKT LAQ +A+ L V F + +AG + + N+ + +++ Sbjct: 122 SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKIIQSANYDISKAEYGIVY 181 Query: 111 IDEIHRLS 118 IDEI +++ Sbjct: 182 IDEIDKIT 189 >gi|323303345|gb|EGA57141.1| Mgs1p [Saccharomyces cerevisiae FostersB] gi|323335886|gb|EGA77164.1| Mgs1p [Saccharomyces cerevisiae Vin13] Length = 415 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 18/111 (16%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVN----------FRSTSGPVIAKAGDLAALLTNLED- 105 ++ GPPG+GKT+LA+++ + + F + A +L + + Sbjct: 1 MILWGPPGVGKTSLARLLTKTATTSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKE 60 Query: 106 ------RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 R VLFIDEIHR + + +++L P +E+ + +++G S ++N Sbjct: 61 YQLTKRRTVLFIDEIHRFNKVQQDLLLPHVENGDI-ILIGATTENPSFQLN 110 >gi|309378864|emb|CBX22569.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 414 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|251794099|ref|YP_003008830.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. JDR-2] gi|247541725|gb|ACS98743.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. JDR-2] Length = 670 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 203 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262 Query: 109 LFIDEI 114 +FIDEI Sbjct: 263 IFIDEI 268 >gi|219852692|ref|YP_002467124.1| replication factor C small subunit [Methanosphaerula palustris E1-9c] gi|219546951|gb|ACL17401.1| Replication factor C [Methanosphaerula palustris E1-9c] Length = 326 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 23/135 (17%) Query: 16 DAD-----ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 DAD I RP L + GQ E L ++ + +L H+LF G G+GKTT Sbjct: 2 DADDHTIWIERYRPTRLADIVGQDEITERLISYV-----KGRSLPHLLFTGSAGIGKTTA 56 Query: 71 AQVVAREL-----GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRL 117 A +ARE +NFR + V+ A + LE + +LF+DE L Sbjct: 57 AVALAREFFGEAWHINFREMNASDERGIDVVRNQIKQFARTSPLEGAEFKILFLDEADAL 116 Query: 118 SIIVEEILYPAMEDF 132 + + L ME + Sbjct: 117 TTDAQAALRRTMETY 131 >gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966] gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966] Length = 353 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP++++E Q A + L+ + +A L H+LF GPPG GKT+ +AR+L Sbjct: 14 RPKSIDEVASQQHAVNVLRKALTSAN-----LPHMLFYGPPGTGKTSTILALARQL 64 >gi|150025047|ref|YP_001295873.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] gi|149771588|emb|CAL43059.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] Length = 361 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 96/248 (38%), Gaps = 61/248 (24%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80 RP+T ++ GQ + L IE A AL LF GP G+GKTT A+++AR++ Sbjct: 12 RPQTFKDVVGQQAITNTLLNAIETNHL-ASAL---LFTGPRGVGKTTCARILARKINQPG 67 Query: 81 ------NFRSTSGPVIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVEEI 124 +F + A + + + NL D+ V IDE+H LS Sbjct: 68 YDDPNEDFAFNVFELDAASNNSVDDIRNLIDQVRIPPQTGQYKVYIIDEVHMLSSAA--- 124 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 F L E P ++ I ATT + IP L+ + Sbjct: 125 -------FNAFLKTLEEPPKHAI--------FILATTEKHKI---------IPTILSRCQ 160 Query: 185 IEDLKTIVQRGAK--------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236 I D K I + AK G+ D+A IA ++ G R A + RV F Sbjct: 161 IFDFKRITVKDAKEHLAEVATNQGVIFEDDALHIIAQKADGAMRDALSIFDRVVSFC--- 217 Query: 237 HAKTITRE 244 K +TR+ Sbjct: 218 -GKNLTRQ 224 >gi|75909397|ref|YP_323693.1| FtsH peptidase [Anabaena variabilis ATCC 29413] gi|75703122|gb|ABA22798.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC 29413] Length = 628 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L +D + Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 IFIDEI 274 >gi|322707676|gb|EFY99254.1| ATPase, AAA family protein [Metarhizium anisopliae ARSEF 23] Length = 1012 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 10/75 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH----------VLFVGPPGLGKTTLAQVVA 75 T E+ + S LK+ A R +A + L GPPG GKT LA+ VA Sbjct: 697 TFEDVHAPKDTISALKLLTSLALVRPDAFAYGVLSQDRIPGCLLYGPPGTGKTMLAKAVA 756 Query: 76 RELGVNFRSTSGPVI 90 +E G N SG I Sbjct: 757 KESGANMLEISGATI 771 >gi|312113350|ref|YP_004010946.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC 17100] gi|311218479|gb|ADP69847.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC 17100] Length = 626 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L VGPPG+GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 192 ILLVGPPGIGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARKMKPCI 251 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 252 IFIDELDSLG 261 >gi|254566263|ref|XP_002490242.1| AAA-peroxin that heterodimerizes with AAA-peroxin Pex1p [Pichia pastoris GS115] gi|238030038|emb|CAY67961.1| AAA-peroxin that heterodimerizes with AAA-peroxin Pex1p [Pichia pastoris GS115] gi|328350635|emb|CCA37035.1| peroxin-6 [Pichia pastoris CBS 7435] Length = 1166 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 856 ILFYGPPGTGKTLLAKAIATNFALNFFSVKGP 887 >gi|228905862|ref|ZP_04069760.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis IBL 200] gi|228937368|ref|ZP_04100015.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228822326|gb|EEM68307.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853802|gb|EEM98561.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis IBL 200] Length = 585 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209 Query: 109 LFIDEI 114 +FIDEI Sbjct: 210 IFIDEI 215 >gi|170688931|ref|ZP_02880133.1| cell division protein FtsH [Bacillus anthracis str. A0465] gi|254682308|ref|ZP_05146169.1| cell division protein FtsH [Bacillus anthracis str. CNEVA-9066] gi|170667155|gb|EDT17916.1| cell division protein FtsH [Bacillus anthracis str. A0465] Length = 633 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|70732247|ref|YP_262003.1| ATP-dependent protease La [Pseudomonas fluorescens Pf-5] gi|68346546|gb|AAY94152.1| ATP-dependent protease La [Pseudomonas fluorescens Pf-5] Length = 806 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 50/189 (26%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 388 VLLVGPPGVGKTSVGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 447 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 +E + V+ +DEI ++ + E L P D LDL + Sbjct: 448 EVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 496 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 497 MDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 555 Query: 199 TGLAVTDEA 207 T L+++D A Sbjct: 556 TSLSISDSA 564 >gi|464347|sp|P33289|PEX6_PICPA RecName: Full=Peroxisomal biogenesis factor 6; AltName: Full=Peroxin-6; AltName: Full=Peroxisome biosynthesis protein PAS5 gi|396147|emb|CAA80278.1| PAS5 [Pichia pastoris] Length = 1165 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 855 ILFYGPPGTGKTLLAKAIATNFALNFFSVKGP 886 >gi|322705901|gb|EFY97484.1| nonsense-mediated mRNA decay protein, putative [Metarhizium anisopliae ARSEF 23] Length = 2207 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 25/172 (14%) Query: 38 SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-------GVNFRSTSGPVI 90 SN+ I + +E +G PG GKTT+A++ A L G F+ TSG + Sbjct: 1234 SNIDTKIRQELSLSEERLSCSLLGNPGTGKTTVARLWAEFLACTGALPGDGFKETSGSKL 1293 Query: 91 AKAG--DLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 A G LL +L+D VLFIDE ++LS P + LD ++ E + R Sbjct: 1294 ANMGVSGCEKLLEDLKDIGGGVLFIDEAYQLSSGNS----PGGKAV-LDYLLAEVENLRG 1348 Query: 147 VKINLSRFTLIAATTR---VGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194 K++ +IA + NP RF I +R N Y ++L I+QR Sbjct: 1349 -KVSF----VIAGYDKQMETFFAHNPGFPSRFPIQMRFNDYSDDELLQILQR 1395 >gi|315644387|ref|ZP_07897527.1| ATP-dependent metalloprotease FtsH [Paenibacillus vortex V453] gi|315280264|gb|EFU43556.1| ATP-dependent metalloprotease FtsH [Paenibacillus vortex V453] Length = 689 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 203 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262 Query: 109 LFIDEI 114 +FIDEI Sbjct: 263 IFIDEI 268 >gi|304437033|ref|ZP_07396996.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369984|gb|EFM23646.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 421 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 26/120 (21%) Query: 25 RTLEEFT-GQVEACSNLKVF-------IEAAKARAEALD----HVLFVGPPGLGKTTLAQ 72 R L+++ GQ EA +L V I A + + E ++ +VL +GP G GKT LAQ Sbjct: 69 RILDQYVIGQDEAKKSLSVAVYNHYKRIHAGQGKNEDVELRKSNVLMIGPTGSGKTLLAQ 128 Query: 73 VVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDEIHRLS 118 +AR L V F + +AG D+ +L L R +++IDEI +++ Sbjct: 129 TLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQRGIIYIDEIDKIA 188 >gi|288554680|ref|YP_003426615.1| ATP-dependent Zn metallopeptidase [Bacillus pseudofirmus OF4] gi|298286810|sp|P94304|FTSH_BACPE RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|288545840|gb|ADC49723.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus pseudofirmus OF4] Length = 679 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 202 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 261 Query: 109 LFIDEI 114 +FIDEI Sbjct: 262 IFIDEI 267 >gi|271965030|ref|YP_003339226.1| ATP-dependent protease ATP-binding subunit [Streptosporangium roseum DSM 43021] gi|270508205|gb|ACZ86483.1| ATP-dependent protease ATP-binding subunit [Streptosporangium roseum DSM 43021] Length = 431 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 37/145 (25%) Query: 11 NVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFI----------EAAKARAEA-- 53 N S ED L +PR + EF GQ A L V + A R A Sbjct: 51 NGSPEDGPRDLPKPREIYEFLEQYVVGQESAKKTLSVAVYNHYKRIRPGAAGNGRPPAEK 110 Query: 54 ------LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---- 103 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 111 EPVELGKSNILLIGPTGCGKTYLAQTLARMLDVPFAIADATALTEAGYVGEDVENILLKL 170 Query: 104 ---EDRDV-------LFIDEIHRLS 118 D DV ++IDEI +++ Sbjct: 171 LQAADYDVKKAETGIVYIDEIDKVA 195 >gi|256397526|ref|YP_003119090.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM 44928] gi|256363752|gb|ACU77249.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM 44928] Length = 672 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+EA A+ +A+ VL GPPG GKT LA+ VA E GV F S SG Sbjct: 185 VEELQEVKEFLEAP-AKFQAIGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 242 >gi|229194456|ref|ZP_04321260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus m1293] gi|228589046|gb|EEK47060.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus m1293] Length = 612 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236 Query: 109 LFIDEI 114 +FIDEI Sbjct: 237 IFIDEI 242 >gi|241951494|ref|XP_002418469.1| peroxin, putative; peroxisomal biogenesis factor, putative; peroxisome biosynthesis protein, putative [Candida dubliniensis CD36] gi|223641808|emb|CAX43770.1| peroxin, putative [Candida dubliniensis CD36] Length = 1158 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 849 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 880 >gi|254502854|ref|ZP_05115005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Labrenzia alexandrii DFL-11] gi|222438925|gb|EEE45604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Labrenzia alexandrii DFL-11] Length = 421 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|154339736|ref|XP_001565825.1| replication factor C, subunit 4 [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063143|emb|CAM45343.1| putative replication factor C, subunit 4 [Leishmania braziliensis MHOM/BR/75/M2904] Length = 360 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+T+ + G EA S L+V A+ L ++L GPPG GKTT +AR+L Sbjct: 13 RPQTVTDIVGNTEAISRLQVI-----AKEGNLPNLLLCGPPGTGKTTSMLCLARDL 63 >gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio] gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio] gi|220673394|emb|CAX13672.1| replication factor C (activator 1) 5 [Danio rerio] Length = 334 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ + S ++ FI + L H+LF GPPG GKT+ AR+L Sbjct: 21 RPQTLDDLISHQDILSTIQKFISEDR-----LPHLLFYGPPGTGKTSTILACARQL 71 >gi|296392741|ref|YP_003657625.1| ATPase AAA [Segniliparus rotundus DSM 44985] gi|296179888|gb|ADG96794.1| AAA ATPase central domain protein [Segniliparus rotundus DSM 44985] Length = 609 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 52/108 (48%), Gaps = 20/108 (18%) Query: 30 FTGQVEACSNLKVFIEAAKARAEA--------LDHVLFVGPPGLGKTTLAQVVAR---EL 78 +G + + L+ ++ A+ RAE H+ F GPPG GKTT+A+VVA+ L Sbjct: 327 MSGVKQQVARLQATVQMARLRAEKGLGGGQAKSQHLAFTGPPGTGKTTIARVVAKIYCGL 386 Query: 79 GV----NFRSTSGP--VIAKAGDLAALLTNLEDR---DVLFIDEIHRL 117 G+ N TS V G A T L DR VLFIDE + L Sbjct: 387 GLLKTANVLETSRKDFVGEHLGSTAIKTTALIDRAMDGVLFIDEAYTL 434 >gi|282859187|ref|ZP_06268309.1| ATP-dependent metallopeptidase HflB [Prevotella bivia JCVIHMP010] gi|282588006|gb|EFB93189.1| ATP-dependent metallopeptidase HflB [Prevotella bivia JCVIHMP010] Length = 707 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 38/222 (17%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L +GPPG GKT LA+ VA E GV F S SG V A + + +++ ++ Sbjct: 233 LLIGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKAPCII 292 Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-----------SRFTLIA 158 FIDEI + + P+M G R +N S ++A Sbjct: 293 FIDEIDAVGRARSK--NPSM----------GGNDERENTLNALLTEMDGFGTNSGVIVMA 340 Query: 159 ATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216 AT RV +L L RF I ++ ++ + K I + L T +I + SR Sbjct: 341 ATNRVDMLDKALLRAGRFDRQIHVDLPDLPERKAIFKVHMAKLKLDTT----VDIDLLSR 396 Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258 TP +G + V + A + A+ +++I L AID++ Sbjct: 397 QTPGFSGADIANVCNEAALIAARHSSKQIGKQDFLD-AIDRI 437 >gi|228912805|ref|ZP_04076453.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925319|ref|ZP_04088416.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931568|ref|ZP_04094475.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943872|ref|ZP_04106258.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228983321|ref|ZP_04143535.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089197|ref|ZP_04220479.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-42] gi|229119728|ref|ZP_04248990.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus 95/8201] gi|229136912|ref|ZP_04265540.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST26] gi|229153844|ref|ZP_04281975.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus ATCC 4342] gi|229182460|ref|ZP_04309712.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BGSC 6E1] gi|228601040|gb|EEK58608.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BGSC 6E1] gi|228629648|gb|EEK86344.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus ATCC 4342] gi|228646577|gb|EEL02783.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST26] gi|228663753|gb|EEL19331.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus 95/8201] gi|228694160|gb|EEL47841.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-42] gi|228776435|gb|EEM24787.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228815829|gb|EEM62064.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828120|gb|EEM73847.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834366|gb|EEM79906.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846865|gb|EEM91869.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 612 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236 Query: 109 LFIDEI 114 +FIDEI Sbjct: 237 IFIDEI 242 >gi|269213481|ref|ZP_06157997.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria cinerea ATCC 14685] gi|269146222|gb|EEZ72640.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria cinerea ATCC 14685] Length = 394 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 94 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 153 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 154 EKAQRGIVYIDEIDKIS 170 >gi|186681813|ref|YP_001865009.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] gi|186464265|gb|ACC80066.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] Length = 628 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L +D + Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 IFIDEI 274 >gi|30260256|ref|NP_842633.1| cell division protein FtsH [Bacillus anthracis str. Ames] gi|47525318|ref|YP_016667.1| cell division protein FtsH [Bacillus anthracis str. 'Ames Ancestor'] gi|49183099|ref|YP_026351.1| cell division protein FtsH [Bacillus anthracis str. Sterne] gi|49476704|ref|YP_034418.1| cell division protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145151|ref|YP_081677.1| cell division protein [Bacillus cereus E33L] gi|65317526|ref|ZP_00390485.1| COG0465: ATP-dependent Zn proteases [Bacillus anthracis str. A2012] gi|118475836|ref|YP_892987.1| FtsH-2 peptidase [Bacillus thuringiensis str. Al Hakam] gi|165872578|ref|ZP_02217210.1| cell division protein FtsH [Bacillus anthracis str. A0488] gi|167635100|ref|ZP_02393417.1| cell division protein FtsH [Bacillus anthracis str. A0442] gi|167641516|ref|ZP_02399764.1| cell division protein FtsH [Bacillus anthracis str. A0193] gi|170707578|ref|ZP_02898031.1| cell division protein FtsH [Bacillus anthracis str. A0389] gi|177655624|ref|ZP_02936987.1| cell division protein FtsH [Bacillus anthracis str. A0174] gi|190568979|ref|ZP_03021880.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I] gi|196036369|ref|ZP_03103766.1| cell division protein FtsH [Bacillus cereus W] gi|196041768|ref|ZP_03109058.1| cell division protein FtsH [Bacillus cereus NVH0597-99] gi|196047383|ref|ZP_03114596.1| cell division protein FtsH [Bacillus cereus 03BB108] gi|206977945|ref|ZP_03238832.1| cell division protein FtsH [Bacillus cereus H3081.97] gi|217957641|ref|YP_002336183.1| cell division protein FtsH [Bacillus cereus AH187] gi|218901267|ref|YP_002449101.1| cell division protein FtsH [Bacillus cereus AH820] gi|222093835|ref|YP_002527884.1| cell division protein [Bacillus cereus Q1] gi|225862118|ref|YP_002747496.1| cell division protein FtsH [Bacillus cereus 03BB102] gi|227812739|ref|YP_002812748.1| cell division protein FtsH [Bacillus anthracis str. CDC 684] gi|229600537|ref|YP_002864717.1| cell division protein FtsH [Bacillus anthracis str. A0248] gi|254724206|ref|ZP_05185991.1| cell division protein FtsH [Bacillus anthracis str. A1055] gi|254735467|ref|ZP_05193175.1| cell division protein FtsH [Bacillus anthracis str. Western North America USA6153] gi|254744631|ref|ZP_05202310.1| cell division protein FtsH [Bacillus anthracis str. Kruger B] gi|254756336|ref|ZP_05208365.1| cell division protein FtsH [Bacillus anthracis str. Vollum] gi|254762392|ref|ZP_05214234.1| cell division protein FtsH [Bacillus anthracis str. Australia 94] gi|300119160|ref|ZP_07056861.1| cell division protein FtsH [Bacillus cereus SJ1] gi|30253577|gb|AAP24119.1| cell division protein FtsH [Bacillus anthracis str. Ames] gi|47500466|gb|AAT29142.1| cell division protein FtsH [Bacillus anthracis str. 'Ames Ancestor'] gi|49177026|gb|AAT52402.1| cell division protein FtsH [Bacillus anthracis str. Sterne] gi|49328260|gb|AAT58906.1| cell division protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978620|gb|AAU20170.1| cell division protein [Bacillus cereus E33L] gi|118415061|gb|ABK83480.1| membrane protease FtsH catalytic subunit [Bacillus thuringiensis str. Al Hakam] gi|164711706|gb|EDR17251.1| cell division protein FtsH [Bacillus anthracis str. A0488] gi|167510501|gb|EDR85899.1| cell division protein FtsH [Bacillus anthracis str. A0193] gi|167529574|gb|EDR92324.1| cell division protein FtsH [Bacillus anthracis str. A0442] gi|170127574|gb|EDS96448.1| cell division protein FtsH [Bacillus anthracis str. A0389] gi|172080035|gb|EDT65134.1| cell division protein FtsH [Bacillus anthracis str. A0174] gi|190559903|gb|EDV13887.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I] gi|195990999|gb|EDX54970.1| cell division protein FtsH [Bacillus cereus W] gi|196021785|gb|EDX60479.1| cell division protein FtsH [Bacillus cereus 03BB108] gi|196027388|gb|EDX66005.1| cell division protein FtsH [Bacillus cereus NVH0597-99] gi|206743851|gb|EDZ55271.1| cell division protein FtsH [Bacillus cereus H3081.97] gi|217067927|gb|ACJ82177.1| cell division protein FtsH [Bacillus cereus AH187] gi|218538348|gb|ACK90746.1| cell division protein FtsH [Bacillus cereus AH820] gi|221237882|gb|ACM10592.1| cell division protein [Bacillus cereus Q1] gi|225790446|gb|ACO30663.1| cell division protein FtsH [Bacillus cereus 03BB102] gi|227006912|gb|ACP16655.1| cell division protein FtsH [Bacillus anthracis str. CDC 684] gi|229264945|gb|ACQ46582.1| cell division protein FtsH [Bacillus anthracis str. A0248] gi|298723482|gb|EFI64223.1| cell division protein FtsH [Bacillus cereus SJ1] gi|324324055|gb|ADY19315.1| cell division protein FtsH [Bacillus thuringiensis serovar finitimus YBT-020] Length = 633 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|332970938|gb|EGK09912.1| cell division protein FtsH [Desmospora sp. 8437] Length = 632 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 32/60 (53%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE T VE LK + A A VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 168 EEKTELVEVVDFLKDPRKFAAVGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISG 227 >gi|301051803|ref|YP_003790014.1| cell division protein [Bacillus anthracis CI] gi|300373972|gb|ADK02876.1| cell division protein [Bacillus cereus biovar anthracis str. CI] Length = 633 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|311743053|ref|ZP_07716861.1| ATP-dependent Clp protease ATP-binding subunit [Aeromicrobium marinum DSM 15272] gi|311313733|gb|EFQ83642.1| ATP-dependent Clp protease ATP-binding subunit [Aeromicrobium marinum DSM 15272] Length = 422 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ D Sbjct: 113 AKSNILMVGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 172 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI ++S Sbjct: 173 YDVKKAETGIIYIDEIDKIS 192 >gi|229176666|ref|ZP_04304071.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus 172560W] gi|229188351|ref|ZP_04315400.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus ATCC 10876] gi|228595150|gb|EEK52920.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus ATCC 10876] gi|228606833|gb|EEK64249.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus 172560W] Length = 612 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236 Query: 109 LFIDEI 114 +FIDEI Sbjct: 237 IFIDEI 242 >gi|149183225|ref|ZP_01861670.1| FtsH [Bacillus sp. SG-1] gi|148849058|gb|EDL63263.1| FtsH [Bacillus sp. SG-1] Length = 608 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 181 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 240 Query: 109 LFIDEI 114 +FIDEI Sbjct: 241 IFIDEI 246 >gi|91086165|ref|XP_970259.1| PREDICTED: similar to GA17483-PA [Tribolium castaneum] gi|270009883|gb|EFA06331.1| hypothetical protein TcasGA2_TC009202 [Tribolium castaneum] Length = 716 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F +GP V A + L + +++ V Sbjct: 311 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEILVGQGARRVRDLFKSAKEKAPCV 370 Query: 109 LFIDEI 114 +FIDEI Sbjct: 371 IFIDEI 376 >gi|73669571|ref|YP_305586.1| replication factor C large subunit [Methanosarcina barkeri str. Fusaro] gi|110287808|sp|Q46AT6|RFCL_METBF RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|72396733|gb|AAZ71006.1| replication factor C large subunit [Methanosarcina barkeri str. Fusaro] Length = 642 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR------ 76 RP+TL+E G +A L+ + E + V+ GP G+GKT+ A +AR Sbjct: 12 RPQTLKEIVGNKKAVQYLRTWAEKWLSGIPDRRAVVLHGPAGVGKTSTAHALARDLDWEV 71 Query: 77 -ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113 EL + + T+G + AG A++ T + ++ +DE Sbjct: 72 IELNASDQRTAGVIERVAGSAASMNTFFGGKRLIILDE 109 >gi|16329602|ref|NP_440330.1| cell division protein FtsH [Synechocystis sp. PCC 6803] gi|2492513|sp|P72991|FTSH3_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 3 gi|1652085|dbj|BAA17010.1| cell division protein; FtsH [Synechocystis sp. PCC 6803] Length = 616 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 29 EFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 E T V+ N F E A+ VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 172 ELTEVVDFLKNADRFTELG---AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227 >gi|163938073|ref|YP_001642957.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis KBAB4] gi|163860270|gb|ABY41329.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis KBAB4] Length = 633 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|299740851|ref|XP_001834051.2| ATP-dependent protease La [Coprinopsis cinerea okayama7#130] gi|298404439|gb|EAU87743.2| ATP-dependent protease La [Coprinopsis cinerea okayama7#130] Length = 988 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 51/197 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRS--------------------TSGPVIAKAGDL 96 +LFVGPPG GKT+L Q +A+ LG F+ SGP + + Sbjct: 507 LLFVGPPGTGKTSLGQSIAKSLGRPFQRISLGGVRDEAEIRGHRRTYVASGPGLI----V 562 Query: 97 AALLTNLEDRDVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 AL VL +DEI ++ + E+L P D + +V Sbjct: 563 QALRKAGRPDPVLLLDEIDKIGQSNFHGDPGAALLEVLDPEQNWSFNDHYI-------NV 615 Query: 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAK 197 I+LS+ I + ++ PL DR + I+L+ Y ++ I +R G + Sbjct: 616 PIDLSQVLFICTANSLETISAPLLDRCEV-IQLSGYTYDEKLHIARRFLLPKQLTANGLE 674 Query: 198 LTGLAVTDEAACEIAMR 214 + +T+ A EIA R Sbjct: 675 KEHVNITEPAMLEIATR 691 >gi|228963166|ref|ZP_04124336.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228796551|gb|EEM43989.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 585 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209 Query: 109 LFIDEI 114 +FIDEI Sbjct: 210 IFIDEI 215 >gi|229074127|ref|ZP_04207174.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock4-18] gi|229094787|ref|ZP_04225793.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-29] gi|229100862|ref|ZP_04231670.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-28] gi|229113742|ref|ZP_04243178.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock1-3] gi|228669739|gb|EEL25145.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock1-3] gi|228682562|gb|EEL36631.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-28] gi|228688655|gb|EEL42527.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-29] gi|228709021|gb|EEL61147.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock4-18] Length = 612 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236 Query: 109 LFIDEI 114 +FIDEI Sbjct: 237 IFIDEI 242 >gi|257051091|ref|YP_003128924.1| Vesicle-fusing ATPase [Halorhabdus utahensis DSM 12940] gi|256689854|gb|ACV10191.1| Vesicle-fusing ATPase [Halorhabdus utahensis DSM 12940] Length = 699 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 16/126 (12%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFV 60 S + + E D S T E+ G + ++ IE + + D VL Sbjct: 167 SEDDTTESGDASEPGSVTYEDIGGLDDELDRVREMIELPLSDPDVFDRLGIEPPKGVLLY 226 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFID 112 GPPG GKT +A+ VA E+ F + SGP I L ED +LF+D Sbjct: 227 GPPGTGKTLIARAVANEVDAYFEAISGPEIVSKYKGESEEQLREAFERAEDEAPSILFVD 286 Query: 113 EIHRLS 118 EI ++ Sbjct: 287 EIDSIA 292 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E VNF +GP Sbjct: 480 VLLYGPPGTGKTLLARSLAGETDVNFIRVAGP 511 >gi|303280281|ref|XP_003059433.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459269|gb|EEH56565.1| predicted protein [Micromonas pusilla CCMP1545] Length = 673 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------EDRDV 108 VL GPPG GKTTLA +ARE GV F S + V +G+ A + L + Sbjct: 50 VLLHGPPGCGKTTLAHAIAREAGVPFFSIAATEIVAGVSGESEAKIRQLFAAAAQAAPSI 109 Query: 109 LFIDEI 114 +FIDEI Sbjct: 110 VFIDEI 115 >gi|242279529|ref|YP_002991658.1| ATP-dependent protease La [Desulfovibrio salexigens DSM 2638] gi|242122423|gb|ACS80119.1| ATP-dependent protease La [Desulfovibrio salexigens DSM 2638] Length = 817 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 48/192 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + F GPPG+GKT++A+ +AR +G F R + G V +A G + L Sbjct: 364 LCFAGPPGVGKTSIARSIARAMGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLR 423 Query: 102 NLE-DRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 E V+ +DE+ ++S + E+L P D LDL Sbjct: 424 RCEFSNPVICLDEVDKMSTDFRGDPSAALLEVLDPEQNGTFNDHYLDL-----------D 472 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLT 199 +LS+ I + + PLQDR I + E E + K + + G K Sbjct: 473 YDLSKVFFITTANDLHSIPLPLQDRMEIINLPGYLETEKMHIAKDFLLPKQVGEHGLKED 532 Query: 200 GLAVTDEAACEI 211 LA++D A +I Sbjct: 533 NLAISDNAMIDI 544 >gi|203284370|ref|YP_002222110.1| DNA polymerase III, subunits gamma and tau [Borrelia duttonii Ly] gi|201083813|gb|ACH93404.1| DNA polymerase III, subunits gamma and tau [Borrelia duttonii Ly] Length = 555 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 93/231 (40%), Gaps = 41/231 (17%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE+ K A A +F GP G+GKT+ A+ +R L Sbjct: 19 RPRDFTSLEGQDFVVETLKHSIESNKI-ANAY---IFSGPRGVGKTSSARAFSRCLNCQ- 73 Query: 83 RSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMED---- 131 +GP I G + N DV+ ID S+ I EEI++P Sbjct: 74 ---TGPTIMPCGTCFNCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPANSRYRV 130 Query: 132 FQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF---- 182 + +D + SA ++V+ + I ATT V L + ++ R NF Sbjct: 131 YIIDEVHMLSNSAFNALLKTVEEPPNYIVFIFATTEVHKLPDTIKSRCQ---HFNFRLLP 187 Query: 183 ----YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 YE+ LK + + DEA IA +S G+ R A L ++ Sbjct: 188 LDKIYEM--LKCVCLED----DIKYEDEALKWIAYKSGGSVRDAYTLFDQI 232 >gi|194246442|ref|YP_002004081.1| similar to ATP-dependent Zn protease [Candidatus Phytoplasma mali] gi|193806799|emb|CAP18226.1| similar to ATP-dependent Zn protease [Candidatus Phytoplasma mali] Length = 467 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 33 QVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFRS 84 Q+ N + F+ A K + L V+F GPPG GKT LA+ A+E ++F + Sbjct: 133 QLRKADNQEFFLRATKHKTNKLPKGVVFYGPPGTGKTYLAKCFAKEAQMSFYT 185 >gi|42779144|ref|NP_976391.1| cell division protein FtsH [Bacillus cereus ATCC 10987] gi|42735059|gb|AAS38999.1| cell division protein FtsH [Bacillus cereus ATCC 10987] Length = 633 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei] gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei] Length = 365 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 5/73 (6%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP L+E + L FIE L H+LF GPPG GKTT AR++ Sbjct: 18 RPSKLDELVAHEQVVKTLTKFIEN-----RTLPHLLFYGPPGTGKTTTVLAAARKMYSPA 72 Query: 83 RSTSGPVIAKAGD 95 R +S + A D Sbjct: 73 RMSSMVLELNASD 85 >gi|255316772|gb|ACU01771.1| protease FtsH-like protein 4 [Brachypodium distachyon] Length = 589 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L + + R + Sbjct: 133 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 192 Query: 109 LFIDEI 114 +FIDEI Sbjct: 193 IFIDEI 198 >gi|229027912|ref|ZP_04184067.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1271] gi|228733426|gb|EEL84253.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1271] Length = 612 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236 Query: 109 LFIDEI 114 +FIDEI Sbjct: 237 IFIDEI 242 >gi|148906545|gb|ABR16425.1| unknown [Picea sitchensis] Length = 1036 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 40 LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 +K ++ K R + +L GPPG GKT LA+ +ARE G+ F SG +++G Sbjct: 538 MKNPLQYYKKRVKLPRGILLSGPPGTGKTLLARAIARECGLPFVFASGAEFSESG 592 >gi|315230875|ref|YP_004071311.1| cell division protein FtsH [Thermococcus barophilus MP] gi|315183903|gb|ADT84088.1| cell division protein FtsH [Thermococcus barophilus MP] Length = 834 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 16/115 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G +A ++ +E E + VL GPPG GKT LA+ VA E Sbjct: 208 TYEDIGGLKDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 267 Query: 78 LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124 +F + +GP I G+ L + E+ ++FIDEI ++ EE+ Sbjct: 268 TNAHFIAINGPEIMSKFYGESEERLREVFKEAEENAPSIIFIDEIDAIAPKREEV 322 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 18/75 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106 +L GPPG GKT LA+ VA E NF GP + L+ + E R Sbjct: 582 ILLYGPPGTGKTMLAKAVATESEANFIGIRGPEV-----LSKWVGESEKRIREIFRKARQ 636 Query: 107 ---DVLFIDEIHRLS 118 V+FIDEI ++ Sbjct: 637 AAPTVVFIDEIDAIA 651 >gi|149072041|ref|YP_001293616.1| cell division protein [Rhodomonas salina] gi|134302992|gb|ABO70796.1| cell division protein [Rhodomonas salina] Length = 628 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 99/241 (41%), Gaps = 42/241 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L ++ + Sbjct: 209 VLLVGPPGTGKTLLAKAIAGESGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCI 268 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-----------SRFTLI 157 +FIDEI + Q +G G R +N + +I Sbjct: 269 VFIDEIDAVG-------------RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIII 315 Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 AAT RV +L L RF + +N ++ I+ A+ L ++E + E+ R Sbjct: 316 AATNRVDVLDAALLRPGRFDRQVTVNVPDVRGRLEILNVHARNKKL--SEEISLEVIARR 373 Query: 216 RGTPRIAGRLLRRVRDFAEVAHA----KTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271 TP +G L + + A + A K +T DA++ R+ G +D + +I Sbjct: 374 --TPGFSGADLANLLNEAAILTARRRKKAVTMSEVDASIDRVIAGMEGTALVDSKTKRLI 431 Query: 272 A 272 A Sbjct: 432 A 432 >gi|14521559|ref|NP_127035.1| cell division control protein [Pyrococcus abyssi GE5] gi|5458778|emb|CAB50265.1| ATPase of the AAA+ family [Pyrococcus abyssi GE5] Length = 840 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 16/116 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G EA ++ +E E + VL GPPG GKT LA+ VA E Sbjct: 210 TYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269 Query: 78 LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125 F + +GP I G+ L + E+ ++FIDEI ++ EE++ Sbjct: 270 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVV 325 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E NF + GP + Sbjct: 584 VLLYGPPGTGKTLLAKAVATESQANFIAIRGPEV 617 >gi|313897534|ref|ZP_07831076.1| cell division protease FtsH [Clostridium sp. HGF2] gi|312957486|gb|EFR39112.1| cell division protease FtsH [Clostridium sp. HGF2] Length = 617 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77 +T + GQ EA + L+ +E K+ A+ L VGPPG GKT LA+ VA E Sbjct: 165 KTFLDVAGQEEAKAALQEMVEFLKSPQRYTQIGAQMPKGALLVGPPGTGKTLLAKAVAGE 224 Query: 78 LGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEI 114 V F S SG + G AA + +L + R+ ++FIDEI Sbjct: 225 ANVPFFSISGSEFVEMFVGRGAARVRDLFKQAREKAPCIVFIDEI 269 >gi|282901547|ref|ZP_06309469.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] gi|281193590|gb|EFA68565.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] Length = 628 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L +D + Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 IFIDEI 274 >gi|299820645|ref|ZP_07052534.1| ATP-dependent metalloprotease FtsH [Listeria grayi DSM 20601] gi|299817666|gb|EFI84901.1| ATP-dependent metalloprotease FtsH [Listeria grayi DSM 20601] Length = 687 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 214 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 273 Query: 109 LFIDEI 114 +FIDEI Sbjct: 274 IFIDEI 279 >gi|254166710|ref|ZP_04873564.1| ATPase, AAA family protein [Aciduliprofundum boonei T469] gi|289596184|ref|YP_003482880.1| AAA ATPase central domain protein [Aciduliprofundum boonei T469] gi|197624320|gb|EDY36881.1| ATPase, AAA family protein [Aciduliprofundum boonei T469] gi|289533971|gb|ADD08318.1| AAA ATPase central domain protein [Aciduliprofundum boonei T469] Length = 437 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+ L + G +A + + + E +A + ++ VG PG GKTT A+ +A E+ Sbjct: 6 VEKYRPKRLRDIVGNTQAINEILRWAEEWEAGKPSYKALILVGKPGCGKTTTARALANEM 65 Query: 79 G 79 G Sbjct: 66 G 66 >gi|194374563|dbj|BAG57177.1| unnamed protein product [Homo sapiens] Length = 1075 Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 669 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 700 >gi|158337706|ref|YP_001518882.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158307947|gb|ABW29564.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 631 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G E+ + L+ +E K+ A+ VL VGPPG GKT +A+ VA E Sbjct: 168 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G AA + +L ++ ++FIDE+ Sbjct: 228 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDEL 271 >gi|46579689|ref|YP_010497.1| cell division protein FtsH [Desulfovibrio vulgaris str. Hildenborough] gi|120602831|ref|YP_967231.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris DP4] gi|46449104|gb|AAS95756.1| cell division protein FtsH [Desulfovibrio vulgaris str. Hildenborough] gi|120563060|gb|ABM28804.1| membrane protease FtsH catalytic subunit [Desulfovibrio vulgaris DP4] gi|311233484|gb|ADP86338.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris RCH1] Length = 656 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 72/275 (26%), Positives = 114/275 (41%), Gaps = 46/275 (16%) Query: 9 SRNVSQEDADISLLR----PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 +R ++QE A ++ EE + VE SN + F + VL VGPPG Sbjct: 140 ARMITQESARVTFEDVAGVDEAKEELSEVVEFLSNPRKF---TRLGGRIPKGVLLVGPPG 196 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDVLFIDEIHR 116 GKT LA+ VA E GV F S SG + G A+ + +L ++FIDEI Sbjct: 197 TGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFMQGKKNAPCLIFIDEIDA 256 Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LIAATTRVGL 165 + Q +G G R +N + F LIAAT R + Sbjct: 257 VG-------------RQRGAGLGGGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDV 303 Query: 166 LTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223 L L RF + + ++ K I++ + T L+ + + + ++GTP +G Sbjct: 304 LDPALLRPGRFDRQVVVPTPDVRGRKRILEVHGRRTPLS----SGVNLEIIAKGTPGFSG 359 Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258 L + + A + AK + +++ D A DK+ Sbjct: 360 ADLENLVNEAALQAAK-LNKDVVDMGDFEYAKDKV 393 >gi|71022951|ref|XP_761705.1| hypothetical protein UM05558.1 [Ustilago maydis 521] gi|46101091|gb|EAK86324.1| hypothetical protein UM05558.1 [Ustilago maydis 521] Length = 1129 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 94/234 (40%), Gaps = 52/234 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 +L VGPPG GKT++A+ +A L F S V A G + + L Sbjct: 651 LLLVGPPGTGKTSIAKSLASALQRPFTRLSLGGVRDEAEIRGHRRTYVGAMPGSIVSSLR 710 Query: 102 NLEDRD-VLFIDEIHRLS----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 + D V+ +DE+ +L + E+L P D + +V I+ Sbjct: 711 KVGVSDPVILLDEVDKLGSGNGLHGDPMAAMLEVLDPEQNHTFSDHYI-------NVPID 763 Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----------GAKLT 199 LSR IA + ++ PL DR + I ++ Y D KT + R G Sbjct: 764 LSRVLFIATANSLDTISPPLLDRTEV-IHISGY-THDEKTAIARQYLLPKQIKAQGLTSD 821 Query: 200 GLAVTDEAACEIAMRSRGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLR 252 L VTDE ++AM G R AG R L R+ +A AK + + LR Sbjct: 822 QLVVTDEVLLKVAM---GYTREAGVRTLE--REIGALARAKAVEYSQSKKGTLR 870 >gi|325130451|gb|EGC53212.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis OX99.30304] Length = 414 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|322695791|gb|EFY87593.1| AAA family ATPase, putative [Metarhizium acridum CQMa 102] Length = 2123 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 77/172 (44%), Gaps = 25/172 (14%) Query: 38 SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-------GVNFRSTSGPVI 90 SN+ I + +E +G PG GKTT+A++ A L G F+ TSG + Sbjct: 1149 SNIDTKIRQELSLSEERLSCSLLGNPGTGKTTVARLWAEFLACTGALPGDGFKETSGSKL 1208 Query: 91 AKAG--DLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 A G LL +L D VLFIDE ++LS P + LD ++ E + R Sbjct: 1209 ANMGVSGCEKLLEDLRDNGGGVLFIDEAYQLSSGNS----PGGKAV-LDYLLAEVENLRG 1263 Query: 147 VKINLSRFTLIAATTR---VGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194 K++ +IA + NP RF I +R N Y ++L I+QR Sbjct: 1264 -KVSF----VIAGYDKQMETFFAHNPGFPSRFPIQMRFNDYSDDELLRILQR 1310 >gi|305663620|ref|YP_003859908.1| TBP-interacting protein TIP49 [Ignisphaera aggregans DSM 17230] gi|304378189|gb|ADM28028.1| TBP-interacting protein TIP49 [Ignisphaera aggregans DSM 17230] Length = 458 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ+EA + + K A +LFVGPPG GKT LA +ARELG Sbjct: 43 LVGQIEARRAAGIVVRMIKEGRLAGRGILFVGPPGSGKTALAIAIARELG 92 >gi|289433575|ref|YP_003463447.1| ATP-dependent metalloprotease FtsH [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169819|emb|CBH26357.1| ATP-dependent metalloprotease FtsH [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 691 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 217 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 276 Query: 109 LFIDEI 114 +FIDEI Sbjct: 277 IFIDEI 282 >gi|254825866|ref|ZP_05230867.1| FtsH [Listeria monocytogenes FSL J1-194] gi|293595105|gb|EFG02866.1| FtsH [Listeria monocytogenes FSL J1-194] Length = 691 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|228950614|ref|ZP_04112749.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228809089|gb|EEM55573.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 585 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209 Query: 109 LFIDEI 114 +FIDEI Sbjct: 210 IFIDEI 215 >gi|229015468|ref|ZP_04172468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1273] gi|229021677|ref|ZP_04178260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1272] gi|228739613|gb|EEL90026.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1272] gi|228745826|gb|EEL95828.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1273] Length = 584 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 147 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 206 Query: 109 LFIDEI 114 +FIDEI Sbjct: 207 IFIDEI 212 >gi|206972571|ref|ZP_03233514.1| cell division protein FtsH [Bacillus cereus AH1134] gi|229077355|ref|ZP_04210025.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock4-2] gi|206732473|gb|EDZ49652.1| cell division protein FtsH [Bacillus cereus AH1134] gi|228705952|gb|EEL58268.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock4-2] Length = 633 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|162449912|ref|YP_001612279.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum 'So ce 56'] gi|310943099|sp|A9FDV9|FTSH2_SORC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|161160494|emb|CAN91799.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum 'So ce 56'] Length = 607 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKA--RAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78 T + G EA + L ++ KA R E L VL VGPPG GKT LA+ +A E Sbjct: 153 TFRDVAGNAEAKTELSEIVDFLKAPERYEKLGGRMPRGVLLVGPPGTGKTLLARAIAGEA 212 Query: 79 GVNFRSTSG 87 V F S SG Sbjct: 213 SVPFFSASG 221 >gi|115437800|ref|NP_001043384.1| Os01g0574400 [Oryza sativa Japonica Group] gi|75272532|sp|Q8LQJ9|FTSH4_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 4, mitochondrial; Short=OsFTSH4; Flags: Precursor gi|20521391|dbj|BAB91902.1| cell division protein-like [Oryza sativa Japonica Group] gi|113532915|dbj|BAF05298.1| Os01g0574400 [Oryza sativa Japonica Group] gi|125570900|gb|EAZ12415.1| hypothetical protein OsJ_02305 [Oryza sativa Japonica Group] Length = 709 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 259 VLLVGPPGTGKTMLARAVAGEAGVPFFSCSG 289 >gi|67470640|ref|XP_651283.1| replication factor C familiy protein [Entamoeba histolytica HM-1:IMSS] gi|56468001|gb|EAL45896.1| replication factor C familiy protein [Entamoeba histolytica HM-1:IMSS] Length = 325 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP T + G +LK FI A + + H+LF GPPG GKTT A + ++L G Sbjct: 10 RPSTTDGIFGHEYILESLKQFINANQ-----IPHMLFYGPPGTGKTTTALAIVKQLCGTK 64 Query: 82 FRS 84 F + Sbjct: 65 FSA 67 >gi|329897203|ref|ZP_08271943.1| ATP-dependent protease La [gamma proteobacterium IMCC3088] gi|328921358|gb|EGG28752.1| ATP-dependent protease La [gamma proteobacterium IMCC3088] Length = 785 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 54/238 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 +L VGPPG+GKT++ + +A LG F S + A G L Sbjct: 365 LLLVGPPGVGKTSIGKSIAESLGREFYRFSLGGMRDEAEIKGHRRTYIGAMPGKFIQALK 424 Query: 102 NLE-DRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 +++ + V+ +DEI +L + E+L P LD + ++++LS Sbjct: 425 DVKVENPVIMLDEIDKLGQSFQGDPASALLEVLDPEQNSAFLDHYL-------DLRVDLS 477 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----------KTIVQRGAKLTGLA 202 + + ++ + PL DR + IRL Y E+ K + + GAK + + Sbjct: 478 KVLFVCTANQLDTIPGPLLDRMEV-IRLAGYIAEEKLAIAKNHLWPKLLAKHGAKRSQIR 536 Query: 203 VTDEAACEIAM---RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 + D A + + R G + +L R +R K I E+ + L RL+I K Sbjct: 537 INDAALKYVIVAYCREAGVRNLEKQLSRLIR--------KAIM-ELLERDLARLSISK 585 >gi|325290593|ref|YP_004266774.1| ATP-dependent protease LonB [Syntrophobotulus glycolicus DSM 8271] gi|324965994|gb|ADY56773.1| ATP-dependent protease LonB [Syntrophobotulus glycolicus DSM 8271] Length = 569 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 RP L E GQ E LK I A + HVL GPPG+GKT +A++V E Sbjct: 65 RPGDLREIIGQKEGVKALKAAICGANPQ-----HVLIYGPPGVGKTAVARLVLEE 114 >gi|320040847|gb|EFW22780.1| DNA replication factor C subunit [Coccidioides posadasii str. Silveira] Length = 398 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ +G + + + FIE+ + L H+L GPPG GKT+ +AR++ Sbjct: 50 RPSTLDDVSGHQDIIATINRFIESNR-----LPHLLLYGPPGTGKTSTILALARQI 100 >gi|310639530|ref|YP_003944288.1| ATP-dependent metalloprotease ftsh [Paenibacillus polymyxa SC2] gi|309244480|gb|ADO54047.1| ATP-dependent metalloprotease FtsH [Paenibacillus polymyxa SC2] Length = 679 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 203 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262 Query: 109 LFIDEI 114 +FIDEI Sbjct: 263 IFIDEI 268 >gi|308066893|ref|YP_003868498.1| cell division protein ftsH-like protein [Paenibacillus polymyxa E681] gi|305856172|gb|ADM67960.1| Cell division protein ftsH-like protein [Paenibacillus polymyxa E681] Length = 678 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 203 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262 Query: 109 LFIDEI 114 +FIDEI Sbjct: 263 IFIDEI 268 >gi|240142553|ref|YP_002967066.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens AM1] gi|240012500|gb|ACS43725.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens AM1] Length = 610 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 8/81 (9%) Query: 45 EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN 102 E K A +L VGPPG GKT LA+ VA E GV F S SG + G AA + + Sbjct: 180 EYGKLGAHIPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMFVGVGAARVRD 239 Query: 103 LEDR------DVLFIDEIHRL 117 L ++ ++FIDE+ L Sbjct: 240 LFEQARKSAPAIIFIDELDAL 260 >gi|229159239|ref|ZP_04287264.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus R309803] gi|228624254|gb|EEK81055.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus R309803] Length = 612 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236 Query: 109 LFIDEI 114 +FIDEI Sbjct: 237 IFIDEI 242 >gi|241666946|ref|YP_002985030.1| AAA family ATPase, CDC48 subfamily [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862403|gb|ACS60068.1| AAA family ATPase, CDC48 subfamily [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 704 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E NF +GP I +K G+ L + + Sbjct: 188 VLLYGPPGTGKTLLARAVANETEANFFHIAGPEIMGSKYGESEERLRQVFQEASQNAPSI 247 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ E++ Sbjct: 248 IFIDEIDSIAPKREQV 263 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 8/69 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRST-SGPVIAK-AGDLAALLTNLEDR------DVL 109 L GPPG GKT LA+ VARE NF +T S +++K G+ ++ L +R V+ Sbjct: 461 LLFGPPGTGKTLLAKAVAREAEANFVATKSSDLLSKWYGESEQQVSRLFERARQVAPTVI 520 Query: 110 FIDEIHRLS 118 FIDEI L+ Sbjct: 521 FIDEIDSLA 529 >gi|11465793|ref|NP_053937.1| cell division protein [Porphyra purpurea] gi|1706926|sp|P51327|FTSH_PORPU RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|1276793|gb|AAC08213.1| hypothetical chloroplast ORF 25 [Porphyra purpurea] Length = 628 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L +D + Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 VFIDEI 274 >gi|66817990|ref|XP_642688.1| peptidase S16, Lon protease family protein [Dictyostelium discoideum AX4] gi|74857001|sp|Q550C8|LONM2_DICDI RecName: Full=Lon protease homolog, mitochondrial 2; Flags: Precursor gi|60470868|gb|EAL68840.1| peptidase S16, Lon protease family protein [Dictyostelium discoideum AX4] Length = 836 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 95/259 (36%), Gaps = 55/259 (21%) Query: 2 MDREGLLSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LF 59 +D LL NV D DIS ++ + G + ++ FI K R V L Sbjct: 330 LDWMTLLPWNVYTNDNFDISKVKEILDRDHYGLKDIKEMIQTFIAVGKLRGSIGGKVILL 389 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------ALLTNL 103 VGPPG GKT++ + +A LG F S ++ ++ AL T Sbjct: 390 VGPPGTGKTSVGKSIANALGRQFHRISVGGLSDVSEIKGHRRTYVASMPGKIIQALKTVK 449 Query: 104 EDRDVLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVKINL 151 V+ IDEI ++S + E+L P D+ LD V +L Sbjct: 450 TSNPVILIDEIDKISRSSQGDPNSALLEVLDPQQNKNFVDYYLD-----------VPYDL 498 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGL 201 SR I + PL DR + + LN Y + I +R G L Sbjct: 499 SRVLFICTANDADSIPAPLLDRMEV-MTLNGYIQSEQMEIAKRYLLPLVRKETGISEEQL 557 Query: 202 AVTDEAA---CEIAMRSRG 217 T EA CE+ R G Sbjct: 558 QFTPEAIKKLCELYCREAG 576 >gi|56808854|ref|ZP_00366565.1| COG0465: ATP-dependent Zn proteases [Streptococcus pyogenes M49 591] Length = 364 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 205 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 264 Query: 109 LFIDEI 114 +FIDEI Sbjct: 265 IFIDEI 270 >gi|226309710|ref|YP_002769604.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC 100599] gi|226092658|dbj|BAH41100.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC 100599] Length = 648 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 264 Query: 109 LFIDEI 114 +FIDEI Sbjct: 265 IFIDEI 270 >gi|170108166|ref|XP_001885292.1| predicted protein [Laccaria bicolor S238N-H82] gi|164639768|gb|EDR04037.1| predicted protein [Laccaria bicolor S238N-H82] Length = 770 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL--TNLEDRDV---- 108 VL GPPG GKT LA +A ELGV F S S P I +G+ L T E + V Sbjct: 159 VLLHGPPGCGKTLLANAMAGELGVPFISISAPSIVSGMSGESEKTLRDTFEEAKRVAPCL 218 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 219 LFIDEIDAIT 228 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 EA VL GPPG GKT LA+ VA E NF S GP Sbjct: 494 EAACGVLLWGPPGCGKTLLAKAVANESRANFISVKGP 530 >gi|121719320|ref|XP_001276359.1| DNA replication factor C subunit Rfc3, putative [Aspergillus clavatus NRRL 1] gi|119404557|gb|EAW14933.1| DNA replication factor C subunit Rfc3, putative [Aspergillus clavatus NRRL 1] Length = 395 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ +G + + + F+EA + L H+L GPPG GKT+ +AR + Sbjct: 52 RPNTLDDVSGHQDILTTINKFVEANR-----LPHLLLYGPPGTGKTSTILALARRI 102 >gi|154248843|ref|YP_001409668.1| recombination factor protein RarA [Fervidobacterium nodosum Rt17-B1] gi|154152779|gb|ABS60011.1| AAA ATPase central domain protein [Fervidobacterium nodosum Rt17-B1] Length = 378 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 34/203 (16%) Query: 58 LFVGPPGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 + GPPG GKT++ ++ + + +N TS I K A + +++ +LFID Sbjct: 14 ILAGPPGTGKTSVLNLIKKYTDYEIVQLNAAFTSVEDIKKWEKYAYNMKGIKNI-LLFID 72 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV--GLLTNPL 170 EIHR + +++ P +E +TL TT +L L Sbjct: 73 EIHRFNKKQQDVFLPGVET--------------------GIYTLYGTTTESPQHVLNPAL 112 Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230 R + +R +DL+ I+++ G+ VT+ I S G R L+ Sbjct: 113 LSRCRV-LRFKKLSEKDLRIILEKAISYVGMEVTENVKDMIIRSSNGDARF---LINTYE 168 Query: 231 DFAEVAHAKTITREIADAALLRL 253 + + AKTI + + D + ++ Sbjct: 169 ILSNI--AKTIGKNLIDEEIFKM 189 >gi|53136688|emb|CAG32673.1| hypothetical protein RCJMB04_32h3 [Gallus gallus] Length = 582 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 10/68 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----------VIAKAGDLAALLTNLEDR 106 L GPPGLGKTTLA V+AR G N + I A + ++L E Sbjct: 354 ALLCGPPGLGKTTLAHVIARHAGYNVVEMNASDDRSPETFRIRIEAATQMKSVLGAEEKP 413 Query: 107 DVLFIDEI 114 + L IDEI Sbjct: 414 NCLIIDEI 421 >gi|66809699|ref|XP_638572.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4] gi|74996892|sp|Q54PT2|VPS4_DICDI RecName: Full=Vacuolar protein sorting-associated protein 4 gi|60467188|gb|EAL65222.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4] Length = 444 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA-GDLAALLTNL------EDRDV 108 +L GPPG GK+ LA+ VA E+ F S S ++ K GD L+ L ++ V Sbjct: 171 ILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSV 230 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 231 IFIDEVDSL 239 >gi|325128438|gb|EGC51319.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis N1568] Length = 414 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|284162219|ref|YP_003400842.1| ATPase AAA [Archaeoglobus profundus DSM 5631] gi|284012216|gb|ADB58169.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus profundus DSM 5631] Length = 801 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E+G +F + +GP I G+ L + + + Sbjct: 228 VLLYGPPGTGKTLIAKAVANEIGASFFTINGPEIMSKYYGESEQRLREIFEEAKENAPSI 287 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 288 IFIDEIDAIA 297 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E NF S GP Sbjct: 565 VLLYGPPGTGKTLIAKAVANEANANFISVKGP 596 >gi|256027041|ref|ZP_05440875.1| DNA polymerase III subunits gamma and tau [Fusobacterium sp. D11] gi|289765024|ref|ZP_06524402.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. D11] gi|289716579|gb|EFD80591.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. D11] Length = 482 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 35/248 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + E +G+ E +LK+ ++ K+ A A LF GP G+GKTT+A+++A+ GVN Sbjct: 10 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63 Query: 83 RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + +G + + A+ L ++ IDEI L E+I Y +E + Sbjct: 64 LNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120 Query: 134 LDLMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNF-- 182 ++ E N TL I ATT + + + R R +F Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPTIISRCQ---RYDFKP 177 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 ++E++K+ ++ K L++TD+ I S G+ R + +L R+ A+ K I Sbjct: 178 LDLEEMKSGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERL---IVTANGKEIN 234 Query: 243 REIADAAL 250 +IA+ L Sbjct: 235 LKIAEDTL 242 >gi|242091595|ref|XP_002441630.1| hypothetical protein SORBIDRAFT_09g030660 [Sorghum bicolor] gi|241946915|gb|EES20060.1| hypothetical protein SORBIDRAFT_09g030660 [Sorghum bicolor] Length = 771 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L + R + Sbjct: 299 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFNAAKKRSPCI 358 Query: 109 LFIDEI 114 +FIDEI Sbjct: 359 IFIDEI 364 >gi|303319413|ref|XP_003069706.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta SOWgp] gi|240109392|gb|EER27561.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta SOWgp] Length = 398 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ +G + + + FIE+ + L H+L GPPG GKT+ +AR++ Sbjct: 50 RPSTLDDVSGHQDIIATINRFIESNR-----LPHLLLYGPPGTGKTSTILALARQI 100 >gi|238882313|gb|EEQ45951.1| peroxisomal biogenesis factor 6 [Candida albicans WO-1] Length = 1147 Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 849 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 880 >gi|158338030|ref|YP_001519206.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158308271|gb|ABW29888.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 631 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G E+ + L+ +E K+ A+ VL VGPPG GKT +A+ VA E Sbjct: 168 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G AA + +L ++ ++FIDE+ Sbjct: 228 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDEL 271 >gi|125526519|gb|EAY74633.1| hypothetical protein OsI_02522 [Oryza sativa Indica Group] Length = 709 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 259 VLLVGPPGTGKTMLARAVAGEAGVPFFSCSG 289 >gi|68482222|ref|XP_714995.1| likely peroxisomal biogenesis AAA ATPase Pex6 [Candida albicans SC5314] gi|68482349|ref|XP_714932.1| likely peroxisomal biogenesis AAA ATPase Pex6 [Candida albicans SC5314] gi|46436531|gb|EAK95892.1| likely peroxisomal biogenesis AAA ATPase Pex6 [Candida albicans SC5314] gi|46436596|gb|EAK95956.1| likely peroxisomal biogenesis AAA ATPase Pex6 [Candida albicans SC5314] Length = 1157 Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 851 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 882 >gi|332186790|ref|ZP_08388532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas sp. S17] gi|332013123|gb|EGI55186.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas sp. S17] Length = 420 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 108 AKSNILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 167 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 168 YNVERAQRGIVYIDEIDKIS 187 >gi|325264757|ref|ZP_08131486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium sp. D5] gi|324030049|gb|EGB91335.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium sp. D5] Length = 423 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 28/129 (21%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63 DI+LL P ++ F GQ EA L V + R A ++L +GP Sbjct: 60 DINLLTPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAEQDLGVELQKSNILMLGPT 119 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109 G GKT LAQ +AR L V F + +AG + + N+ + ++ Sbjct: 120 GCGKTLLAQTLARILNVPFAIADATALTEAGYVGEDVENILLKVIQAADGDIERAEHGII 179 Query: 110 FIDEIHRLS 118 +IDEI +++ Sbjct: 180 YIDEIDKIT 188 >gi|308389490|gb|ADO31810.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria meningitidis alpha710] Length = 414 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|229542261|ref|ZP_04431321.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1] gi|229326681|gb|EEN92356.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1] Length = 670 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|156742524|ref|YP_001432653.1| ATP-dependent protease La [Roseiflexus castenholzii DSM 13941] gi|302425070|sp|A7NM80|LON_ROSCS RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|156233852|gb|ABU58635.1| ATP-dependent protease La [Roseiflexus castenholzii DSM 13941] Length = 802 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 85/221 (38%), Gaps = 55/221 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L +AR LG F R G V +A G + L R Sbjct: 359 LCFVGPPGVGKTSLGTSIARALGRKFVRVALGGVRDEAEIRGHRRTYIGALPGRIIQGIN 418 Query: 107 ------DVLFIDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148 V +DE+ +LS+ + E+L P A D LD V Sbjct: 419 RAGSNNPVFMLDEVDKLSVGFQGDPAAALLEVLDPEQNVAFVDRYLD-----------VP 467 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVT 204 +LSR I R + L DR + + E+E L + ++QR GLA Sbjct: 468 FDLSRALFICTANRSDTIPPALLDRMELLELAGYTEMEKLEICRRYLIQRQRNEQGLAER 527 Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 E A+R R +R++ A + + R I Sbjct: 528 APTITEAALR------------RLIREYTHEAGVRDLERRI 556 >gi|116871603|ref|YP_848384.1| cell division ATP-dependent metalloprotease FtsH [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740481|emb|CAK19601.1| cell division ATP-dependent metalloprotease FtsH [Listeria welshimeri serovar 6b str. SLCC5334] Length = 691 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|169609180|ref|XP_001798009.1| hypothetical protein SNOG_07677 [Phaeosphaeria nodorum SN15] gi|111064023|gb|EAT85143.1| hypothetical protein SNOG_07677 [Phaeosphaeria nodorum SN15] Length = 550 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 18/148 (12%) Query: 22 LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP +L++ GQ N L+ + K L ++ G PG GKTT+A+++A G Sbjct: 138 MRPTSLDDVCGQELVGPNGILRGMVNEGK-----LPSLVLWGRPGTGKTTIARLIANTSG 192 Query: 80 VNF---RSTSGP---VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 F STS V G+ A L + ++F DE+HR S ++ +E Sbjct: 193 ARFVEINSTSTKLEEVRKIFGEAARDLQLTGRKTIVFCDELHRFSKTQQDAFLGPVESGI 252 Query: 134 LDLMVG--EGPSARSVKINLSR---FTL 156 + L+ E PS + + LSR FTL Sbjct: 253 ITLIAATTENPSFKVISALLSRCRTFTL 280 >gi|91783911|ref|YP_559117.1| FtsH-2 peptidase [Burkholderia xenovorans LB400] gi|91687865|gb|ABE31065.1| membrane protease FtsH catalytic subunit [Burkholderia xenovorans LB400] Length = 659 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 117/271 (43%), Gaps = 45/271 (16%) Query: 26 TLEEFTGQVEACSNLKVFIE----AAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA + LK +E A + R + VL VG PG GKT LA+ VA E Sbjct: 168 TFDDIAGIDEAKAELKQIVEFLRNAERYRRLGGKIPKGVLIVGAPGTGKTLLAKAVAGEA 227 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAME 130 GV F S SG + G AA + +L ++ ++FIDE+ L + + + Sbjct: 228 GVPFFSISGSAFVEMFVGVGAARVRDLFEQAQKKAPCIVFIDELDALGKVRGAGVTSGND 287 Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL--QDRFGIPIRLNF 182 + + L M G P+ S ++AAT R +L L RF I ++ Sbjct: 288 EREQTLNQLLVEMDGFQPN--------SGVIILAATNRPEILDPALLRPGRFDRHIAIDR 339 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 ++ + I+Q K LA D EIA R TP AG L V + A + HA Sbjct: 340 PDLNGRRQILQVHVKKVTLA-ADVDLAEIASR---TPGFAGADLANVVNEAAL-HA---- 390 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIAR 273 A L + A+ + FD+ R +T + R Sbjct: 391 -----AELDKSAVGMVDFDEAIDRAMTGMER 416 >gi|325204365|gb|ADY99818.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M01-240355] Length = 414 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|325136470|gb|EGC59076.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M0579] Length = 414 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|322505367|emb|CAM40398.2| AAA family ATPase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 944 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL GPPG KT LA+ +A E +NF S GP V +K GD + ++ DR V Sbjct: 712 VLLYGPPGCSKTMLAKALANESRMNFISVKGPEVFSKWVGDSEKAVRDIFDRARAASPCV 771 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 772 VFIDEL 777 >gi|313668518|ref|YP_004048802.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria lactamica ST-640] gi|313005980|emb|CBN87437.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria lactamica 020-06] Length = 414 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|270290205|ref|ZP_06196431.1| cell division protease FtsH [Pediococcus acidilactici 7_4] gi|304385526|ref|ZP_07367870.1| cell division protein FtsH [Pediococcus acidilactici DSM 20284] gi|270281742|gb|EFA27574.1| cell division protease FtsH [Pediococcus acidilactici 7_4] gi|304328030|gb|EFL95252.1| cell division protein FtsH [Pediococcus acidilactici DSM 20284] Length = 694 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKNAPSI 283 Query: 109 LFIDEI 114 +FIDEI Sbjct: 284 IFIDEI 289 >gi|254672175|emb|CBA05020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis alpha275] Length = 414 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|254670021|emb|CBA04788.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis alpha153] Length = 376 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|254805167|ref|YP_003083388.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis alpha14] gi|254668709|emb|CBA06486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis alpha14] Length = 414 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|256071912|ref|XP_002572282.1| PIM1 peptidase (S16 family) [Schistosoma mansoni] gi|238657437|emb|CAZ28513.1| PIM1 peptidase (S16 family) [Schistosoma mansoni] Length = 1036 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 33/208 (15%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70 S+E DI + E+ G + + FI ++ + +L F GPPG+GKT++ Sbjct: 512 TSEEHLDIGQAKKILDEDHYGMDDVKKRILEFIAVSQLKGSTQGKILCFCGPPGVGKTSI 571 Query: 71 AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEI 114 A +AR L FR + G V A G + L + + ++ IDEI Sbjct: 572 ANSIARALNRKYFRFSVGGMSDVSEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEI 631 Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 +L + + E+L P LD + V ++LSR I ++ + Sbjct: 632 DKLGRGWQGDPASALLELLDPEQNANFLDHYL-------DVTVDLSRVLFITTANQLDTI 684 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y E+ I +R Sbjct: 685 PEPLRDRMEV-IEVSGYVEEEKLAIAKR 711 >gi|269120918|ref|YP_003309095.1| ATP-dependent protease La [Sebaldella termitidis ATCC 33386] gi|268614796|gb|ACZ09164.1| ATP-dependent protease La [Sebaldella termitidis ATCC 33386] Length = 769 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 48/235 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+LA VAR + F R + G V +A G + + L Sbjct: 347 ICLVGPPGVGKTSLAHSVARAMDRKFVRISLGGVRDEAEIRGHRRTYIGSMPGRIISALK 406 Query: 102 NLE-DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + + V+ DEI ++ S + E+L PA + D V + P +LS Sbjct: 407 QIGVNNPVMLFDEIDKMASDFRGDPSSAMLEVLDPAQNNTFEDHYV-DAP------FDLS 459 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203 + I +G + PL+DR I ++ E E L +T + G K + Sbjct: 460 KVFFITTANDLGGIPGPLRDRMEIIYIESYTEFEKLNIAKKYLIPQTQEENGLKDYKVDF 519 Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KTITREIADAALLRLAIDK 257 DEA +I + T R LRR E++ + + +E+ D ++ I+K Sbjct: 520 DDEAIFKII--NEYTREAGVRNLRR-----EISKVFRKVAKEVVDKRKAKIVINK 567 >gi|254520537|ref|ZP_05132593.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA] gi|226914286|gb|EEH99487.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA] Length = 600 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLAKAIAGEAGVPFYSISG 224 >gi|145592539|ref|YP_001154541.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum arsenaticum DSM 13514] gi|145284307|gb|ABP51889.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum arsenaticum DSM 13514] Length = 731 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E G NF + GP I G+ ++ + + V Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMAAPAV 550 Query: 109 LFIDEIHRLS 118 +FIDEI L+ Sbjct: 551 VFIDEIDALA 560 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 +L +GPPG GKT LA+ VA E F + +GP I G+ A L + + + Sbjct: 216 ILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAI 275 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 276 IFIDEIDAIAPKREEV 291 >gi|18312110|ref|NP_558777.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum str. IM2] gi|18159541|gb|AAL62959.1| AAA family ATPase, possible cell division control protein cdc48 [Pyrobaculum aerophilum str. IM2] Length = 731 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E G NF + GP I G+ ++ + + V Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMAAPAV 550 Query: 109 LFIDEIHRLS 118 +FIDEI L+ Sbjct: 551 VFIDEIDALA 560 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 16/115 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ +A ++ +E E H +L +GPPG GKT LA+ VA E Sbjct: 177 TWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAVANE 236 Query: 78 LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 F + +GP I G+ A L + + ++FIDEI ++ EE+ Sbjct: 237 ANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 291 >gi|16802266|ref|NP_463751.1| hypothetical protein lmo0220 [Listeria monocytogenes EGD-e] gi|224500329|ref|ZP_03668678.1| hypothetical protein LmonF1_11934 [Listeria monocytogenes Finland 1988] gi|224503460|ref|ZP_03671767.1| hypothetical protein LmonFR_13282 [Listeria monocytogenes FSL R2-561] gi|254829311|ref|ZP_05233998.1| ftsH [Listeria monocytogenes FSL N3-165] gi|254832459|ref|ZP_05237114.1| hypothetical protein Lmon1_13976 [Listeria monocytogenes 10403S] gi|255028436|ref|ZP_05300387.1| hypothetical protein LmonL_03016 [Listeria monocytogenes LO28] gi|284803041|ref|YP_003414906.1| hypothetical protein LM5578_2798 [Listeria monocytogenes 08-5578] gi|284996182|ref|YP_003417950.1| hypothetical protein LM5923_2747 [Listeria monocytogenes 08-5923] gi|16409585|emb|CAD00747.1| ftsH [Listeria monocytogenes EGD-e] gi|258601724|gb|EEW15049.1| ftsH [Listeria monocytogenes FSL N3-165] gi|284058603|gb|ADB69544.1| hypothetical protein LM5578_2798 [Listeria monocytogenes 08-5578] gi|284061649|gb|ADB72588.1| hypothetical protein LM5923_2747 [Listeria monocytogenes 08-5923] Length = 691 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|319410635|emb|CBY91004.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria meningitidis WUE 2594] Length = 414 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|167521884|ref|XP_001745280.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776238|gb|EDQ89858.1| predicted protein [Monosiga brevicollis MX1] Length = 683 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 52/259 (20%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF---- 82 E+ G + + FI K R +L F GPPG+GKT++A+ +AR L + Sbjct: 212 EDHYGMKDVKDRVLEFIAVGKLRNSMHGKILTFSGPPGVGKTSIAKSIARALNREYYRFS 271 Query: 83 --------------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE------ 122 R+ G + K + L T ++ +DE+ ++ V Sbjct: 272 VGGLHDVAEIKGHRRTYVGAMPGKP--IQCLKTTGTQNPLILLDEVDKIGRGVHGDPTSS 329 Query: 123 --EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 E+L PA LD + V ++LS+ I + + PL DR I I+L Sbjct: 330 LLELLDPAQNSGFLDHYL-------DVPVDLSKVLFICTANVLDTIPGPLLDRMEI-IQL 381 Query: 181 NFYEIEDLKTIVQR----------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230 + Y ++ + I ++ G L +TDEA + + +R R +G +R + Sbjct: 382 SGYMADEKRAIAKQYLIPEAQKTSGVTAEQLEITDEA---LDVLNRAYCRESG--VRNLE 436 Query: 231 DFAEVAHAKTITREIADAA 249 + H K + + D A Sbjct: 437 KHIDKIHRKAALKLVRDNA 455 >gi|254303476|ref|ZP_04970834.1| possible AAA family ATPase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323668|gb|EDK88918.1| possible AAA family ATPase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 369 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 66/228 (28%) Query: 56 HVLFVGPPGLGKTTLAQVVAR-------------------ELGVNFRSTSGPVIAKAGDL 96 H+ FVG PG GKTT+A++V R +L ++ + + K DL Sbjct: 144 HLAFVGNPGTGKTTVARIVGRIYKRIGLLSKGHFVEVSRTDLIAGYQGQTALKVKKVIDL 203 Query: 97 AALLTNLEDRDVLFIDEIHRLS-----------IIVEEILYPAMEDFQLDLMVGEGPSAR 145 A VLFIDE + ++ + E L A+ED++ DL+V Sbjct: 204 AK-------GGVLFIDEAYSITENDHSDSYGKECLTE--LTKALEDYRGDLVV------- 247 Query: 146 SVKINLSRFTLIAATT---RVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201 ++A T +NP L+ RF I + Y ++L I+ K Sbjct: 248 ----------IVAGYTEPMNKFFESNPGLKSRFNTFIEFDDYNSDELDKILISMCKNNDY 297 Query: 202 AVTDEAACEIAMRSRGTPRIA------GRLLRRVRDFAEVAHAKTITR 243 + +EA +I + + GRL+R + D + HAK + + Sbjct: 298 TLEEEAKEKIHLYFEKQITLKDKNFANGRLVRNLYDDLVMNHAKRVIK 345 >gi|139439224|ref|ZP_01772666.1| Hypothetical protein COLAER_01680 [Collinsella aerofaciens ATCC 25986] gi|133775248|gb|EBA39068.1| Hypothetical protein COLAER_01680 [Collinsella aerofaciens ATCC 25986] Length = 712 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 228 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 258 >gi|116493273|ref|YP_805008.1| FtsH-2 peptidase [Pediococcus pentosaceus ATCC 25745] gi|116103423|gb|ABJ68566.1| membrane protease FtsH catalytic subunit [Pediococcus pentosaceus ATCC 25745] Length = 693 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKNAPSI 283 Query: 109 LFIDEI 114 +FIDEI Sbjct: 284 IFIDEI 289 >gi|1669371|gb|AAB46346.1| ATPase; strong similarity to peroxisome biosynthesis protein PAS1 (PID:g1172019); coded for by human cDNA C04279 (NID:g1467530) [Homo sapiens] Length = 541 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 190 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 221 >gi|15677237|ref|NP_274390.1| ATP-dependent protease ATP-binding subunit [Neisseria meningitidis MC58] gi|21263485|sp|Q9JYY3|CLPX_NEIMB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|7226618|gb|AAF41746.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis MC58] gi|316984186|gb|EFV63164.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis H44/76] gi|325134392|gb|EGC57037.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M13399] gi|325140408|gb|EGC62929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis CU385] gi|325200007|gb|ADY95462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis H44/76] gi|325201919|gb|ADY97373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M01-240149] gi|325205861|gb|ADZ01314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M04-240196] gi|325208330|gb|ADZ03782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis NZ-05/33] Length = 414 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|16799329|ref|NP_469597.1| hypothetical protein lin0252 [Listeria innocua Clip11262] gi|16412681|emb|CAC95485.1| ftsH [Listeria innocua Clip11262] Length = 690 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|304387303|ref|ZP_07369496.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria meningitidis ATCC 13091] gi|304338686|gb|EFM04803.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria meningitidis ATCC 13091] Length = 414 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|297250255|ref|ZP_06863929.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria polysaccharea ATCC 43768] gi|296839417|gb|EFH23355.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria polysaccharea ATCC 43768] Length = 394 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 94 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 153 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 154 EKAQRGIVYIDEIDKIS 170 >gi|291520851|emb|CBK79144.1| ATP-dependent metalloprotease FtsH [Coprococcus catus GD/7] Length = 677 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ E+ +L+ ++ K A+ L VGPPG GKT LA+ VA E Sbjct: 178 TFQDVAGQEESKESLREIVDFLHNPEKYTKIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 237 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 238 GVPFFSLSG 246 >gi|289620609|emb|CBI52970.1| unnamed protein product [Sordaria macrospora] Length = 387 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+TL + T Q + L+ ++A L H+LF GPPG GKT+ +A+EL Sbjct: 35 VEKYRPKTLSDVTAQDHTITVLQRTLQATN-----LPHMLFYGPPGTGKTSTILALAKEL 89 >gi|297724619|ref|NP_001174673.1| Os06g0229066 [Oryza sativa Japonica Group] gi|255676855|dbj|BAH93401.1| Os06g0229066 [Oryza sativa Japonica Group] Length = 486 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ +A E GV F S SG + G A+ + +L DR + Sbjct: 252 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFDRAKASAPCL 311 Query: 109 LFIDEI 114 +FIDEI Sbjct: 312 VFIDEI 317 >gi|290894272|ref|ZP_06557239.1| ftsH protein [Listeria monocytogenes FSL J2-071] gi|290556156|gb|EFD89703.1| ftsH protein [Listeria monocytogenes FSL J2-071] Length = 690 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|242399369|ref|YP_002994793.1| Pk-cdcA protein [Thermococcus sibiricus MM 739] gi|242265762|gb|ACS90444.1| Pk-cdcA protein [Thermococcus sibiricus MM 739] Length = 839 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 16/115 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G +A ++ +E E + VL GPPG GKT LA+ VA E Sbjct: 211 TYEDIGGLKDAVQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 270 Query: 78 LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124 +F + +GP I G+ L + E+ ++FIDEI ++ EE+ Sbjct: 271 ANAHFIAINGPEIMSKYYGESEERLRDIFKEAEENAPSIIFIDEIDAIAPKREEV 325 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 18/75 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106 +L GPPG GKT LA+ VA E NF GP + L+ + E R Sbjct: 585 ILLYGPPGTGKTLLAKAVANESEANFIGIRGPEV-----LSKWVGESEKRIREIFRKARQ 639 Query: 107 ---DVLFIDEIHRLS 118 V+FIDE+ ++ Sbjct: 640 AAPTVVFIDEVDSIA 654 >gi|296120341|ref|YP_003628119.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM 3776] gi|296012681|gb|ADG65920.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM 3776] Length = 714 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 15/110 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKA--RAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA L+ +E K + +AL VL VGPPG GKT LA+ VA E Sbjct: 221 TFQDVAGIDEAVEELREVVEFLKTPEKYQALGGRIPRGVLLVGPPGTGKTLLAKAVAGEA 280 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSII 120 GV F SG V A + + +R ++FIDE+ L + Sbjct: 281 GVPFYGLSGSDFVEMFVGVGAARVRDMFQQAGERSPAIIFIDELDALGKV 330 >gi|212528130|ref|XP_002144222.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Penicillium marneffei ATCC 18224] gi|210073620|gb|EEA27707.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Penicillium marneffei ATCC 18224] Length = 741 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T V+ N +++ AK A VL GPPG GKT LA+ VA Sbjct: 481 ADIGALGGIRDELVTAVVDPIKNPEIY---AKVGITAPTGVLLWGPPGCGKTLLAKAVAN 537 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 538 ESRANFISIKGP 549 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT LA A +LGV F S S P I +G+ L D + Sbjct: 212 VLLHGPPGCGKTMLANAFAADLGVPFISISAPSIVSGMSGESEKALREHFDEAKKVAPCL 271 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 272 IFIDEIDAIT 281 >gi|161870243|ref|YP_001599413.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria meningitidis 053442] gi|189044141|sp|A9M020|CLPX_NEIM0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|161595796|gb|ABX73456.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria meningitidis 053442] Length = 414 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|156405290|ref|XP_001640665.1| predicted protein [Nematostella vectensis] gi|156227800|gb|EDO48602.1| predicted protein [Nematostella vectensis] Length = 675 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E +NF S GP Sbjct: 436 VLLYGPPGTGKTLMAKAVATECSLNFLSVKGP 467 >gi|153813437|ref|ZP_01966105.1| hypothetical protein RUMOBE_03857 [Ruminococcus obeum ATCC 29174] gi|149830458|gb|EDM85550.1| hypothetical protein RUMOBE_03857 [Ruminococcus obeum ATCC 29174] Length = 633 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 15/103 (14%) Query: 27 LEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 + G+ EA NL+ ++ K A VL VGPPG GKT LA+ VA E Sbjct: 165 FSDVAGEEEAKENLQEIVDYLHNPEKYTKVGASMPKGVLLVGPPGTGKTMLAKAVAGESN 224 Query: 80 VNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 V F S SG + A + L +++ ++FIDEI Sbjct: 225 VPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 267 >gi|148657914|ref|YP_001278119.1| ATP-dependent protease La [Roseiflexus sp. RS-1] gi|148570024|gb|ABQ92169.1| ATP-dependent protease La [Roseiflexus sp. RS-1] Length = 783 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 47/218 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDRDVLFID 112 + FVGPPG+GKT+L + +AR LG F R++ G + +A G + L R + + Sbjct: 357 LCFVGPPGVGKTSLGRSIARALGRKFVRTSLGGIRDEAEIRGHRRTYIGALPGRIIQGMK 416 Query: 113 EIH-RLSIIVEEILYPAMEDFQ-------LDLMVGEGPSARS-----VKINLSRFTLIAA 159 R + V + + +DF+ L+++ E +A S + +LS+ IA Sbjct: 417 TAKSRYPVYVLDEIDKVGQDFRGDPTSALLEVLDPEQNNAFSDHYLEIPFDLSQVVFIAT 476 Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT------IVQRGAKLTGLA-----VTDEAA 208 ++ + +PL+DR I I + Y ED K +V++ + GL +TD+A Sbjct: 477 ANQLDTIPSPLRDRMEI-IEIGGY-TEDEKLGIAQGFLVRKQREFHGLTPDQLIITDDA- 533 Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +++ VR++ A + + REIA Sbjct: 534 ----------------IIKLVREYTREAGVRNLEREIA 555 >gi|119182767|ref|XP_001242497.1| hypothetical protein CIMG_06393 [Coccidioides immitis RS] Length = 398 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ +G + + + FIE+ + L H+L GPPG GKT+ +AR++ Sbjct: 50 RPSTLDDVSGHQDIIATINRFIESNR-----LPHLLLYGPPGTGKTSTILALARQI 100 >gi|19114380|ref|NP_593468.1| peroxin-6 (predicted) [Schizosaccharomyces pombe 972h-] gi|3219842|sp|O13764|PEX6_SCHPO RecName: Full=Peroxisomal ATPase pex6; AltName: Full=Peroxin-6; AltName: Full=Peroxisome biosynthesis protein pex6 gi|2370473|emb|CAB11501.1| peroxin-6 (predicted) [Schizosaccharomyces pombe] Length = 948 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT LA+ VA EL + F S GP + G+ A + N+ ++ V Sbjct: 691 VLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCV 750 Query: 109 LFIDEIHRLS 118 +F DE+ ++ Sbjct: 751 IFFDELDSIA 760 >gi|68477184|ref|XP_717385.1| hypothetical protein CaO19.522 [Candida albicans SC5314] gi|74590628|sp|Q5A6N1|LONM_CANAL RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor gi|46439094|gb|EAK98416.1| hypothetical protein CaO19.522 [Candida albicans SC5314] Length = 1078 Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 38/189 (20%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGP------------ 88 FI K +L GPPG GKT++A+ +A L + R G Sbjct: 529 FISVGKISGNVDGKILCLAGPPGTGKTSIAKSIAEALNRKYTRIAVGGVQDVHDVKGHRR 588 Query: 89 --VIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137 V + G + LT + + ++ IDEI +L EIL P + +D Sbjct: 589 TYVASIPGRIVTALTQAKTSNPLMLIDEIDKLDTTSHGGAARAFLEILDPEQNNSFVDNF 648 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194 + VK++LS+ + +G + PL+DR I I +N Y D I +R Sbjct: 649 I-------EVKVDLSKVLFVCTANYLGSIPGPLRDRMEI-IEVNGYTKNDKIEITKRHLI 700 Query: 195 --GAKLTGL 201 AK GL Sbjct: 701 PAAAKKVGL 709 >gi|309777529|ref|ZP_07672482.1| cell division protease FtsH [Erysipelotrichaceae bacterium 3_1_53] gi|308914704|gb|EFP60491.1| cell division protease FtsH [Erysipelotrichaceae bacterium 3_1_53] Length = 618 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77 +T + GQ EA + L+ +E K+ A+ L VGPPG GKT LA+ VA E Sbjct: 166 KTFLDVAGQEEAKAALQEMVEFLKSPERYKKIGAQMPKGALLVGPPGTGKTLLAKAVAGE 225 Query: 78 LGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEI 114 V F S SG + G AA + +L + R+ ++FIDEI Sbjct: 226 ANVPFFSISGSEFVEMFVGRGAARVRDLFKQAREKAPCIVFIDEI 270 >gi|300122679|emb|CBK23246.2| unnamed protein product [Blastocystis hominis] Length = 903 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 16/70 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGD----------LAALLTNLE 104 +L GPPG GKT LA+ +ARE G NF S + I GD LAA L+ Sbjct: 621 LLLFGPPGTGKTMLAKALARESGANFLSIATSTIFNKYVGDSEQNTRAIFTLAARLSPC- 679 Query: 105 DRDVLFIDEI 114 V+FIDEI Sbjct: 680 ---VIFIDEI 686 >gi|296130892|ref|YP_003638142.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM 20109] gi|296022707|gb|ADG75943.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM 20109] Length = 541 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 94/236 (39%), Gaps = 36/236 (15%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA---RELGVN 81 R E Q E ++ +A R H++FVG PG GKTT+A++VA R LG+ Sbjct: 229 RVKREIRQQAEVLRVERLRADAGLTRPSLTRHLVFVGNPGTGKTTVARLVAGLYRALGLL 288 Query: 82 FRST------SGPVIAKAGDLAALLTNLEDR---DVLFIDEIHRLS-----IIVEEILYP 127 + S V G A T + + VLFIDE + L+ L Sbjct: 289 EKGHLVEVDRSELVAGYLGQTATKTTEVVTKALGGVLFIDEAYSLADDQYGAEAVNTLVK 348 Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIE 186 MED + +L+V + ++RF L TNP L+ RF + + Y Sbjct: 349 DMEDHRSELVV----IVAGYPLPMARF----------LSTNPGLESRFATTVAFDDYTDA 394 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA----GRLLRRVRDFAEVAHA 238 L+ I A+ + EA + PR GRL R + D A + HA Sbjct: 395 QLREIFALAARKADFEPSPEALDLVEQIVAAQPRHEGFGNGRLARNLLDRAVLKHA 450 >gi|226222849|ref|YP_002756956.1| cell division protein ftsH [Listeria monocytogenes Clip81459] gi|225875311|emb|CAS04008.1| Putative cell division protein ftsH [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 695 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|203287904|ref|YP_002222919.1| DNA polymerase III, gamma and tau subunits [Borrelia recurrentis A1] gi|201085124|gb|ACH94698.1| DNA polymerase III, gamma and tau subunits [Borrelia recurrentis A1] Length = 555 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 93/231 (40%), Gaps = 41/231 (17%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR GQ LK IE+ K A A +F GP G+GKT+ A+ +R L Sbjct: 19 RPRDFTSLEGQDFVVETLKHSIESNKI-ANAY---IFSGPRGVGKTSSARAFSRCLNCQ- 73 Query: 83 RSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMED---- 131 +GP I G + N DV+ ID S+ I EEI++P Sbjct: 74 ---TGPTIMPCGTCFNCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPANSRYRV 130 Query: 132 FQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF---- 182 + +D + SA ++V+ + I ATT V L + ++ R NF Sbjct: 131 YIIDEVHMLSNSAFNALLKTVEEPPNYIVFIFATTEVHKLPDTIKSRCQ---HFNFRLLP 187 Query: 183 ----YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 YE+ LK + + DEA IA +S G+ R A L ++ Sbjct: 188 LDKIYEM--LKCVCLED----DIKYEDEALKWIAYKSGGSVRDAYTLFDQI 232 >gi|158336375|ref|YP_001517549.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158306616|gb|ABW28233.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 631 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G E+ + L+ +E K+ A+ VL VGPPG GKT +A+ VA E Sbjct: 168 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G AA + +L ++ ++FIDE+ Sbjct: 228 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDEL 271 >gi|119487887|ref|ZP_01621384.1| ClpX, ATPase regulatory subunit [Lyngbya sp. PCC 8106] gi|119455463|gb|EAW36601.1| ClpX, ATPase regulatory subunit [Lyngbya sp. PCC 8106] Length = 449 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +++ VGP G GKT LAQ +A++L V F + +AG D+ +L L Sbjct: 135 NIMLVGPTGCGKTLLAQTLAKQLDVPFAVADATTLTEAGYVGDDVENILLRLLQVADFDI 194 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 195 EAAQRGIIYIDEIDKIS 211 >gi|254933060|ref|ZP_05266419.1| FtsH [Listeria monocytogenes HPB2262] gi|254992585|ref|ZP_05274775.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL J2-064] gi|21667250|gb|AAM74002.1|AF467001_3 FtsH [Listeria monocytogenes] gi|293584618|gb|EFF96650.1| FtsH [Listeria monocytogenes HPB2262] Length = 687 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|91775521|ref|YP_545277.1| FtsH-2 peptidase [Methylobacillus flagellatus KT] gi|91709508|gb|ABE49436.1| membrane protease FtsH catalytic subunit [Methylobacillus flagellatus KT] Length = 605 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARGQAPAI 252 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 253 IFIDELDALG 262 >gi|47097259|ref|ZP_00234819.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 1/2a F6854] gi|254900995|ref|ZP_05260919.1| hypothetical protein LmonJ_14313 [Listeria monocytogenes J0161] gi|254913937|ref|ZP_05263949.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes J2818] gi|254938273|ref|ZP_05269970.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes F6900] gi|47014359|gb|EAL05332.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 1/2a F6854] gi|258610883|gb|EEW23491.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes F6900] gi|293591955|gb|EFG00290.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes J2818] Length = 691 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|46906452|ref|YP_012841.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes serotype 4b str. F2365] gi|47093162|ref|ZP_00230937.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 4b H7858] gi|46879716|gb|AAT03018.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes serotype 4b str. F2365] gi|47018469|gb|EAL09227.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 4b H7858] gi|328467976|gb|EGF39003.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes 1816] gi|332310629|gb|EGJ23724.1| ATP-dependent zinc metalloprotease FtsH [Listeria monocytogenes str. Scott A] Length = 691 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|303248990|ref|ZP_07335236.1| ATP-dependent protease La [Desulfovibrio fructosovorans JJ] gi|302489639|gb|EFL49577.1| ATP-dependent protease La [Desulfovibrio fructosovorans JJ] Length = 819 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 50/196 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+LA+ +AR + F R + G V +A G + L Sbjct: 364 LCLVGPPGVGKTSLAKSIARAMDREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 423 Query: 102 NLE-DRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ + V +DE+ ++S + E+L P A D LD+ Sbjct: 424 RVKFNNPVFCLDEVDKMSTDFRGDPSAALLEVLDPEQNYAYSDHYLDM-----------D 472 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198 +LS+ I + + PLQDR I IR+ Y E E + K I Q G K Sbjct: 473 YDLSKIFFITTANSLHSIPLPLQDRMEI-IRIPGYLETEKMEIGRRFLMPKNIEQHGLKP 531 Query: 199 TGLAVTDEAACEIAMR 214 L + D+A E+ R Sbjct: 532 ENLDLADDALLEVIRR 547 >gi|319763663|ref|YP_004127600.1| ATP-dependent clp protease, ATP-binding subunit clpx [Alicycliphilus denitrificans BC] gi|330824072|ref|YP_004387375.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicycliphilus denitrificans K601] gi|317118224|gb|ADV00713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicycliphilus denitrificans BC] gi|329309444|gb|AEB83859.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicycliphilus denitrificans K601] Length = 421 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 117 NILLIGPTGSGKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYDV 176 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 ERAQRGIVYIDEIDKIS 193 >gi|268316402|ref|YP_003290121.1| ATP-dependent metalloprotease FtsH [Rhodothermus marinus DSM 4252] gi|310946760|sp|D0MGU8|FTSH_RHOM4 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|262333936|gb|ACY47733.1| ATP-dependent metalloprotease FtsH [Rhodothermus marinus DSM 4252] Length = 697 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 44/95 (46%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE N K F + VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 221 EEVAEIVEFLKNPKKFTRLGGKLPKG---VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 277 Query: 88 P------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 V A + L +++ ++FIDEI Sbjct: 278 SDFVEMFVGVGAARVRDLFRQAKEKAPCIIFIDEI 312 >gi|254854450|ref|ZP_05243798.1| FtsH [Listeria monocytogenes FSL R2-503] gi|300766353|ref|ZP_07076312.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL N1-017] gi|258607850|gb|EEW20458.1| FtsH [Listeria monocytogenes FSL R2-503] gi|300512952|gb|EFK40040.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL N1-017] Length = 691 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|50286197|ref|XP_445527.1| hypothetical protein [Candida glabrata CBS 138] gi|51701761|sp|Q6FW67|PEX6_CANGA RecName: Full=Peroxisomal biogenesis factor 6; AltName: Full=Peroxin-6 gi|49524832|emb|CAG58438.1| unnamed protein product [Candida glabrata] Length = 1017 Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 754 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 785 >gi|33151466|ref|NP_872819.1| ATP-dependent protease ATP-binding subunit [Haemophilus ducreyi 35000HP] gi|46576468|sp|Q7VP79|CLPX_HAEDU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|33147686|gb|AAP95208.1| ATP-dependent Clp protease, ATP-binding ClpX subunit [Haemophilus ducreyi 35000HP] Length = 418 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------------- 102 ++L +GP G GKT LA+ +AR L V F + +AG + + N Sbjct: 117 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCNFDA 176 Query: 103 -LEDRDVLFIDEIHRLS 118 L +R ++FIDEI +++ Sbjct: 177 ELAERGIIFIDEIDKIT 193 >gi|322492871|emb|CBZ28150.1| putative replication factor C, subunit 4 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 360 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+T+ + G EA S L+V A+ L ++L GPPG GKTT +AR+L Sbjct: 13 RPQTVADIVGNTEAISRLQVI-----AKEGNLPNLLLCGPPGTGKTTSMLCLARDL 63 >gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus DX253] gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus DX253] Length = 325 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+TL++ G + + LK +IE L ++LF G G+GKTT A +A+EL Sbjct: 17 VEKYRPQTLDDVAGHDDITARLKSYIERND-----LPNLLFSGQAGIGKTTCAVAIAKEL 71 Query: 79 -GVNFRS 84 G +++S Sbjct: 72 YGDSWQS 78 >gi|309358101|emb|CAP34442.2| CBR-RFC-4.1 protein [Caenorhabditis briggsae AF16] Length = 340 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ Q E + LK + + L H+LF GPPG GKT+ A R+L Sbjct: 23 RPKTLDDIAHQEEVVTMLK-----GALQGKDLPHLLFYGPPGTGKTSTALAFCRQL 73 >gi|305663571|ref|YP_003859859.1| AAA family ATPase, CDC48 subfamily [Ignisphaera aggregans DSM 17230] gi|304378140|gb|ADM27979.1| AAA family ATPase, CDC48 subfamily [Ignisphaera aggregans DSM 17230] Length = 737 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 8/77 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ +A E G F +GP I G+ L + D + Sbjct: 234 ILLYGPPGCGKTLLAKALANETGAYFIPINGPEIMSKFYGESEQRLRQIFDEAKKNAPAI 293 Query: 109 LFIDEIHRLSIIVEEIL 125 +FIDEI L+ EE++ Sbjct: 294 IFIDEIDALAPKREEVV 310 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ A E G NF + GP I Sbjct: 508 ILLYGPPGCGKTLLAKAAATESGANFIAVKGPEI 541 >gi|302038046|ref|YP_003798368.1| cell division protease FtsH [Candidatus Nitrospira defluvii] gi|300606110|emb|CBK42443.1| Cell division protease FtsH [Candidatus Nitrospira defluvii] Length = 604 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 28/205 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ +A E GV F S SG + G A+ + +L ++ + Sbjct: 190 VLIVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKHAPCI 249 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF------TLIAATTR 162 +FIDEI + + L ++ + L + + + F LIAAT R Sbjct: 250 IFIDEIDAVGRLRGAGLGGGHDEREQTL--------NQLLVEMDGFDTTEGVILIAATNR 301 Query: 163 VGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 +L L RF + +N ++ I++ K LA A E+ +RGTP Sbjct: 302 PDVLDPALLRPGRFDRQVVVNRPDLRGRSEILKVHTKKVPLA----ADVELEKIARGTPG 357 Query: 221 IAGRLLRRVRDFAEVAHAKTITREI 245 +G L + + A + A+ +E+ Sbjct: 358 FSGADLENLVNEAALWAARWNKKEV 382 >gi|326792449|ref|YP_004310270.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM 5427] gi|326543213|gb|ADZ85072.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM 5427] Length = 655 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 203 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 233 >gi|260886972|ref|ZP_05898235.1| cell division protein FtsH [Selenomonas sputigena ATCC 35185] gi|260863034|gb|EEX77534.1| cell division protein FtsH [Selenomonas sputigena ATCC 35185] Length = 670 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA L+ +E K + D VL GPPG GKT LA+ VA E Sbjct: 162 TFEDVAGADEAKQELEEVVEFLKHPKKFNDLGARIPKGVLLYGPPGTGKTLLARAVAGEA 221 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F + SG + G A+ + +L D+ ++FIDEI Sbjct: 222 GVPFFTISGSDFVEMFVGVGASRVRDLFDQAKKNAPCIVFIDEI 265 >gi|300774297|ref|ZP_07084161.1| ATP-dependent Clp protease ATP-binding subunit [Chryseobacterium gleum ATCC 35910] gi|300506941|gb|EFK38075.1| ATP-dependent Clp protease ATP-binding subunit [Chryseobacterium gleum ATCC 35910] Length = 378 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 30/128 (23%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD----------HVLFVGPPG 64 L +P+ ++EF GQ +A L + + R A D +++ +G G Sbjct: 40 LKKPKEIKEFLDQYVIGQDQAKKQLSIAVYNHYKRLLHAQDENREVELEKSNIIMIGETG 99 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLF 110 GKT LA+ +AREL V F ++ +AG D+ ++L+ L ++ ++F Sbjct: 100 TGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRLLMVADYDVEKAEKGIVF 159 Query: 111 IDEIHRLS 118 IDEI +++ Sbjct: 160 IDEIDKIA 167 >gi|170077524|ref|YP_001734162.1| cell division protein ftsH like protein (ATP-dependent zinc metallopeptidase) [Synechococcus sp. PCC 7002] gi|169885193|gb|ACA98906.1| Cell division protein ftsH like protein (ATP-dependent zinc metallopeptidase) [Synechococcus sp. PCC 7002] Length = 625 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA + L +E K A+ VL VGPPG GKT +A+ VA E Sbjct: 168 TFDDVAGVEEAKTELTEIVEFLKTPQRYTAIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G AA + +L ++ ++FIDE+ Sbjct: 228 GVPFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCIIFIDEL 271 >gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis] gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis] Length = 335 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ + S ++ FI K L H+LF GPPG GKT+ A++L Sbjct: 22 RPQTLDDLISHQDILSTIQRFISEDK-----LPHLLFYGPPGTGKTSTILACAKQL 72 >gi|84996647|ref|XP_953045.1| replication factor C subunit [Theileria annulata strain Ankara] gi|65304041|emb|CAI76420.1| replication factor C subunit, putative [Theileria annulata] Length = 347 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP TL++ + S L VF E + L H+LF GPPG GKT+ ++R + N Sbjct: 14 RPETLQDIISHEDIMSTLMVFAEKGQ-----LPHLLFHGPPGSGKTSTILAISRYMYGNS 68 Query: 83 RS 84 R+ Sbjct: 69 RN 70 >gi|85110311|ref|XP_963397.1| activator 1 subunit 3 [Neurospora crassa OR74A] gi|28881264|emb|CAD70523.1| related to replication factor C chain Rfc3 [Neurospora crassa] gi|28925076|gb|EAA34161.1| activator 1 subunit 3 [Neurospora crassa OR74A] Length = 389 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP +L + +GQ + + + F++ + L H+LF GPPG GKT+ +AR++ Sbjct: 50 RPVSLSDVSGQQDILATINKFVDTNR-----LPHLLFYGPPGTGKTSTVLALARQI 100 >gi|325958394|ref|YP_004289860.1| Replication factor C small subunit [Methanobacterium sp. AL-21] gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21] Length = 347 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 11/81 (13%) Query: 4 REGLLSRNVSQEDAD------ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57 R+ L++ E+ D + RP+TL+E GQ LK +++ + ++ Sbjct: 11 RQQLINNATQYENGDSMNAPWVEKYRPQTLDEVVGQEHTILRLKRYVKEGN-----MPNL 65 Query: 58 LFVGPPGLGKTTLAQVVAREL 78 +F GP G+GKTT + +A+E+ Sbjct: 66 MFTGPAGVGKTTTSIALAKEM 86 >gi|313125329|ref|YP_004035593.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM 11551] gi|312291694|gb|ADQ66154.1| Proteasome-activating nucleotidase [Halogeometricum borinquense DSM 11551] Length = 409 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 11/88 (12%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA- 93 + SN ++F AK E VL GPPG GKT LA+ VA E F +G + + Sbjct: 169 DPLSNPEMF---AKVGVEPPSGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKF 225 Query: 94 -GDLAALLTNL----EDRD--VLFIDEI 114 G+ A L+ +L DR+ V+FIDEI Sbjct: 226 IGEGARLVRDLFELAADREPAVIFIDEI 253 >gi|290558951|gb|EFD92336.1| AAA family ATPase, CDC48 subfamily [Candidatus Parvarchaeum acidophilus ARMAN-5] gi|290559274|gb|EFD92611.1| AAA family ATPase, CDC48 subfamily [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 764 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 8/75 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E +F + +GP V++K GD L + D + Sbjct: 251 VLLYGPPGAGKTLLARAVADESDAHFITINGPEVMSKWVGDAEKKLREIFDDAEKNAPSI 310 Query: 109 LFIDEIHRLSIIVEE 123 +FIDEI ++ EE Sbjct: 311 IFIDEIDAIATKREE 325 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E NF + GP I G+ + + D+ + Sbjct: 525 ILLFGPPGTGKTLLAKAVAHETESNFIAIKGPEIYNKYVGESEKRVREIFDKARQVSPSI 584 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 585 IFIDELDSIA 594 >gi|242767242|ref|XP_002341331.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Talaromyces stipitatus ATCC 10500] gi|218724527|gb|EED23944.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Talaromyces stipitatus ATCC 10500] Length = 740 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T V+ N +++ AK A VL GPPG GKT LA+ VA Sbjct: 480 ADIGALGGIRDELVTAVVDPIKNPEIY---AKVGITAPTGVLLWGPPGCGKTLLAKAVAN 536 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 537 ESRANFISIKGP 548 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT LA A +LGV F S S P + +G+ L D + Sbjct: 211 VLLHGPPGCGKTMLANAFAADLGVPFISISAPSVVSGMSGESEKALREHFDEAKKVAPCL 270 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 271 IFIDEIDAIT 280 >gi|167754078|ref|ZP_02426205.1| hypothetical protein ALIPUT_02366 [Alistipes putredinis DSM 17216] gi|167658703|gb|EDS02833.1| hypothetical protein ALIPUT_02366 [Alistipes putredinis DSM 17216] Length = 639 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 88/233 (37%), Gaps = 37/233 (15%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP T GQ S LK IE R + LF GP G+GKTT A++ A+ +N Sbjct: 12 RPATFSSVVGQKHITSTLKNAIE----RGQLAHAYLFCGPRGVGKTTCARIFAK--AINC 65 Query: 83 RSTSGPVIAKAGDL----------------AALLTNLED-----RDVLFIDEIHRLSI-I 120 G A + AA ++ED V I ++ R S+ I Sbjct: 66 LHPEGAEACNACESCRSFNDGRSLNIHELDAASNNSVEDIRSLIEQVRIIPQVGRYSVFI 125 Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 ++E+ + F L E P A ++ I ATT + + R I Sbjct: 126 IDEVHMLSAAAFNAFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI-YDF 176 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 N +ED ++ A G+ DE+ IA ++ G R A + + F Sbjct: 177 NRIRVEDSVEYLKYIASQEGITADDESLNLIAQKADGGMRDALSMFDKAVSFC 229 >gi|118443553|ref|YP_876996.1| ATP-dependent protease LA [Clostridium novyi NT] gi|118134009|gb|ABK61053.1| ATP-dependent protease LA [Clostridium novyi NT] Length = 598 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 83/227 (36%), Gaps = 54/227 (23%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +S+LRP + E GQ +L +K + H++ GPPG+GKTT A++ E+ Sbjct: 129 LSMLRPSSFSEIVGQERPIKSL-----ISKLASPYPQHIILYGPPGVGKTTAARLALEEV 183 Query: 79 ------------------GVNFR------------STSGPVIAKAG-DLAAL-------- 99 G R S P+ + DLA + Sbjct: 184 KKLKHTPFGESAKFVEVDGTTLRWDPREIANPLLGSVHDPIYQGSKRDLAEIGVPEPKPG 243 Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINL------- 151 L VLFIDEI L I++ L +ED +++ P ++ + Sbjct: 244 LVTEAHGGVLFIDEIGELDTILQNKLLKVLEDKRVEFSSSYYDPDDENIPKYIKYLFENG 303 Query: 152 --SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196 + F LI ATTR NP + D+K IV+ A Sbjct: 304 APADFVLIGATTREPKDINPALRSRCTEVYFEPLSAGDIKNIVENAA 350 >gi|57239194|ref|YP_180330.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia ruminantium str. Welgevonden] gi|58579152|ref|YP_197364.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia ruminantium str. Welgevonden] gi|57161273|emb|CAH58194.1| ATP-dependent Clp protease, ATP-binding subunit [Ehrlichia ruminantium str. Welgevonden] gi|58417778|emb|CAI26982.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia ruminantium str. Welgevonden] Length = 764 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 23/148 (15%) Query: 6 GLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFV 60 G+ SRN++ D D + L + GQ A S+L I+ AKA + L LF Sbjct: 446 GIPSRNLAHNDLDKVKNLEKNLKQHIFGQDFAISSLVDSIKIAKAGLRDHRKPLASYLFT 505 Query: 61 GPPGLGKTTLAQVVARELGVNF-----------RSTSGPVIAKAG----DLAALLTNLED 105 GP G+GKT LA+ +A +G+ S S + + G D LLT+ Sbjct: 506 GPTGVGKTELAKQLANHMGMKLIRFDMSEYMESHSISKIIGSPPGYVGYDQGGLLTDSIS 565 Query: 106 R---DVLFIDEIHRLSIIVEEILYPAME 130 R VL +DEI + + IL M+ Sbjct: 566 RHQYSVLLLDEIEKAHSDIYNILLQIMD 593 >gi|332703465|ref|ZP_08423553.1| anti-sigma H sporulation factor, LonB [Desulfovibrio africanus str. Walvis Bay] gi|332553614|gb|EGJ50658.1| anti-sigma H sporulation factor, LonB [Desulfovibrio africanus str. Walvis Bay] Length = 833 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 44/190 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L + +AR LG F R + G + +A G + ++ R Sbjct: 388 LCFVGPPGVGKTSLGRSIARSLGRQFVRMSLGGMRDEAEIRGHRRTYIGSMPGRIIQSIK 447 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAME-DFQLDLMVGEGPSARSVKINL 151 ++ +DEI ++ S + E+L P FQ + +V +L Sbjct: 448 QAGTKNPIIMLDEIDKVGTDFRGDPSSALLEVLDPEQNYTFQDHYL--------NVPFDL 499 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI-----VQRGAKLTGLA---- 202 S+ I + + + PL+DR I IR+ Y D I V R AK GL+ Sbjct: 500 SKVMFICTSNVLDTIPGPLRDRMEI-IRIPGYTESDKVKIARTYLVPRQAKENGLSEDEV 558 Query: 203 -VTDEAACEI 211 +TD+ ++ Sbjct: 559 QITDQVIAKV 568 >gi|330839242|ref|YP_004413822.1| ATP-dependent metalloprotease FtsH [Selenomonas sputigena ATCC 35185] gi|329747006|gb|AEC00363.1| ATP-dependent metalloprotease FtsH [Selenomonas sputigena ATCC 35185] Length = 663 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA L+ +E K + D VL GPPG GKT LA+ VA E Sbjct: 155 TFEDVAGADEAKQELEEVVEFLKHPKKFNDLGARIPKGVLLYGPPGTGKTLLARAVAGEA 214 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F + SG + G A+ + +L D+ ++FIDEI Sbjct: 215 GVPFFTISGSDFVEMFVGVGASRVRDLFDQAKKNAPCIVFIDEI 258 >gi|313884248|ref|ZP_07818014.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eremococcus coleocola ACS-139-V-Col8] gi|312620695|gb|EFR32118.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eremococcus coleocola ACS-139-V-Col8] Length = 415 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 32/134 (23%) Query: 17 ADISLLRPRTL-----EEFTGQVEACSNLKVFI---------EAAKARAEALD----HVL 58 DI +L+P + + GQ +A NL V + K + +D ++ Sbjct: 56 GDIQVLKPNEIMTILDQYVVGQKQAKKNLSVAVYNHYKRIMHNQDKQEEDEVDLQKSNIA 115 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------E 104 +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 116 LIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENVLLKLVQAADYDVAKA 175 Query: 105 DRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 176 EKGIIYIDEIDKIS 189 >gi|302348206|ref|YP_003815844.1| Cell division control protein 48, AAA family [Acidilobus saccharovorans 345-15] gi|302328618|gb|ADL18813.1| Cell division control protein 48, AAA family [Acidilobus saccharovorans 345-15] Length = 740 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 22/123 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E G NF + GP V++K G+ + + + V Sbjct: 500 VLLFGPPGTGKTMLAKAVATESGANFIAIRGPEVLSKWVGESEKAIREIFKKARQYAPAV 559 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVK-----INLSRFTLIAATTRV 163 +F DEI ++ ++ + D VGE ++ + NL +IAAT R Sbjct: 560 VFFDEIESIA---------SLRGTEEDSNVGERIVSQLLTEIDGITNLENVVVIAATNRP 610 Query: 164 GLL 166 L+ Sbjct: 611 DLV 613 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E F + +GP I Sbjct: 227 VLLYGPPGTGKTLLAKAVATESDAYFVAINGPEI 260 >gi|317126811|ref|YP_004093093.1| ATP-dependent metalloprotease FtsH [Bacillus cellulosilyticus DSM 2522] gi|315471759|gb|ADU28362.1| ATP-dependent metalloprotease FtsH [Bacillus cellulosilyticus DSM 2522] Length = 680 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 204 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 263 Query: 109 LFIDEI 114 +FIDEI Sbjct: 264 IFIDEI 269 >gi|229917401|ref|YP_002886047.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sp. AT1b] gi|229468830|gb|ACQ70602.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sp. AT1b] Length = 674 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 200 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 259 Query: 109 LFIDEI 114 +FIDEI Sbjct: 260 IFIDEI 265 >gi|156841391|ref|XP_001644069.1| hypothetical protein Kpol_1014p31 [Vanderwaltozyma polyspora DSM 70294] gi|156114703|gb|EDO16211.1| hypothetical protein Kpol_1014p31 [Vanderwaltozyma polyspora DSM 70294] Length = 1044 Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT +A+ +A +NF S GP Sbjct: 773 VLFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 804 >gi|146094540|ref|XP_001467307.1| replication factor C, subunit 4 [Leishmania infantum JPCM5] gi|321398414|emb|CBZ08802.1| putative replication factor C, subunit 4 [Leishmania infantum JPCM5] Length = 360 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+T+ + G EA S L+V A+ L ++L GPPG GKTT +AR+L Sbjct: 13 RPQTVADIVGNTEAISRLQVI-----AKEGNLPNLLLCGPPGTGKTTSMLCLARDL 63 >gi|187920402|ref|YP_001889433.1| ATP-dependent protease La [Burkholderia phytofirmans PsJN] gi|302425038|sp|B2TFQ5|LON_BURPP RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|187718840|gb|ACD20063.1| ATP-dependent protease La [Burkholderia phytofirmans PsJN] Length = 804 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 101/246 (41%), Gaps = 50/246 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + F+GPPG+GKT+L Q +AR L F R + G V +A G++ + Sbjct: 372 LCFLGPPGVGKTSLGQSIARALERPFVRVSLGGVHDEAEIRGHRRTYIGAMPGNIIQAIR 431 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R+ V+ +DE+ +L V E+L P D +G V +LS Sbjct: 432 KAGARNCVMLLDELDKLGQGVHGDPAAAMLEVLDPEQNASFRDNYLG-------VPFDLS 484 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT----IVQRGAKLTGLAVTDEAA 208 +A ++ + PL+DR I + E E + +V R + GL A Sbjct: 485 AIVFVATANQIEGIAGPLRDRMEILDLPGYTEAEKFQIAQRFLVPRQLEACGLTA---AQ 541 Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA---ALLRLAIDKMGFDQLDL 265 CE+ + L +RD+ A +++ R+I LR+A D ++++ Sbjct: 542 CELPDET---------LRAIIRDYTREAGVRSLERQIGAVFRYVALRVAEDPSTHERIEP 592 Query: 266 RYLTMI 271 L+ I Sbjct: 593 DRLSSI 598 >gi|55377635|ref|YP_135485.1| cell division control protein 48 [Haloarcula marismortui ATCC 43049] gi|55230360|gb|AAV45779.1| cell division control protein 48 [Haloarcula marismortui ATCC 43049] Length = 757 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 EA VL GPPG GKT LA+ VA E NF S GP Sbjct: 498 EAAKGVLMYGPPGTGKTLLAKAVANEAQSNFISVKGP 534 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E+ F + SGP I G+ L + D + Sbjct: 230 VLLHGPPGTGKTLMAKAVANEIDAYFTTISGPEIMSKYYGESEEQLREVFDEASENAPAI 289 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 290 VFIDEIDSIA 299 >gi|14590568|ref|NP_142636.1| cell division control [Pyrococcus horikoshii OT3] gi|3257095|dbj|BAA29778.1| 840aa long hypothetical cell division control protein (transitional endoplasmic reticulum ATPase) [Pyrococcus horikoshii OT3] Length = 840 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 16/116 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G EA ++ +E E + VL GPPG GKT LA+ VA E Sbjct: 210 TYEDIGGLKEAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269 Query: 78 LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125 F + +GP I G+ L + E+ ++FIDEI ++ EE++ Sbjct: 270 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVV 325 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E NF + GP + Sbjct: 584 VLLYGPPGTGKTLLAKAVATESEANFIAVRGPEV 617 >gi|325198516|gb|ADY93972.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis G2136] Length = 414 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|313204334|ref|YP_004042991.1| ATP-dependent clp protease ATP-binding subunit clpx [Paludibacter propionicigenes WB4] gi|312443650|gb|ADQ80006.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Paludibacter propionicigenes WB4] Length = 410 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 29/127 (22%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR---AEALD-------HVLFVGPPGL 65 L +P ++E+ GQ EA L V + R A+ D +++ VG G Sbjct: 60 LPKPTEIKEYLDQYVIGQNEAKKYLSVAVYNHYKRLMQAKTSDDVEIEKSNIIMVGYTGT 119 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111 GKT LA+ +A++L V F V+ +AG D+ ++LT L +R ++FI Sbjct: 120 GKTLLAKTIAKKLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYDVKAAERGIVFI 179 Query: 112 DEIHRLS 118 DEI +++ Sbjct: 180 DEIDKIA 186 >gi|297624945|ref|YP_003706379.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM 17093] gi|297166125|gb|ADI15836.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM 17093] Length = 665 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 50/104 (48%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA LK ++ K AE +L VGPPG GKT LA+ VA E Sbjct: 161 TFEDVAGHEEAKQELKEVVDFLKNPQKYLRIGAEIPKGMLLVGPPGTGKTLLARAVAGEA 220 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEI 114 GV F + S + G A+ + NL E R ++FIDE+ Sbjct: 221 GVPFLTVSASEFMEMFVGVGASRVRNLFEEARKASPAIIFIDEL 264 >gi|217965694|ref|YP_002351372.1| cell division protein FtsH [Listeria monocytogenes HCC23] gi|217334964|gb|ACK40758.1| cell division protein FtsH [Listeria monocytogenes HCC23] gi|307569759|emb|CAR82938.1| ATP-dependent metalloprotease [Listeria monocytogenes L99] Length = 690 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|241859994|ref|XP_002416257.1| chromosome transmission fidelity factor, putative [Ixodes scapularis] gi|215510471|gb|EEC19924.1| chromosome transmission fidelity factor, putative [Ixodes scapularis] Length = 833 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 18/72 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVN--------------FRSTSGPVIAKAGDLAALLTN 102 VL GPPGLGKTTLA V+AR G N F++T + A + A+L Sbjct: 264 VLLYGPPGLGKTTLAHVIARHAGYNVVELNASDDRSPEVFKTT----LEAATQMRAVLGQ 319 Query: 103 LEDRDVLFIDEI 114 + L IDEI Sbjct: 320 DPRPNCLIIDEI 331 >gi|170087828|ref|XP_001875137.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650337|gb|EDR14578.1| predicted protein [Laccaria bicolor S238N-H82] Length = 334 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 Q + RP TL++ + + ++ FIE + L H+LF GPPG GKT+ Sbjct: 13 QRSFRVEKYRPVTLDDVVSHKDITNTIERFIEKNR-----LPHLLFYGPPGTGKTSTILA 67 Query: 74 VAREL-GVNFR 83 VAR + G +R Sbjct: 68 VARRIYGAQYR 78 >gi|121635078|ref|YP_975323.1| ATP-dependent protease ATP-binding subunit [Neisseria meningitidis FAM18] gi|166214793|sp|A1KUJ4|CLPX_NEIMF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|120866784|emb|CAM10537.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria meningitidis FAM18] gi|325132435|gb|EGC55128.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M6190] gi|325138423|gb|EGC60991.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis ES14902] gi|325143447|gb|EGC65773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M01-240013] Length = 414 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|307184045|gb|EFN70595.1| Protein YME1-like protein [Camponotus floridanus] Length = 753 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG GKT LA+ VA E GV F +GP Sbjct: 336 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGP 367 >gi|306820815|ref|ZP_07454439.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551133|gb|EFM39100.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 416 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 33/148 (22%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD 55 M+D E +N + DI+L +P+ ++ F GQ A L V + R L+ Sbjct: 44 MIDEE---KQNYKSDSYDINLPKPKEIKSFLDEYIIGQESAKKVLSVSLYNHYKRVYNLE 100 Query: 56 H-----------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL 100 + +L +GP G GKT LAQ +A+ + V F + +AG D+ +L Sbjct: 101 NKKDDIDIQKSNILLLGPTGSGKTLLAQTLAKIMNVPFAIADATTLTEAGYVGEDVENIL 160 Query: 101 TNL---EDRD-------VLFIDEIHRLS 118 L D + +++IDEI +++ Sbjct: 161 LKLIQASDYNIERAQTGIIYIDEIDKIT 188 >gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus] Length = 354 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+T+++ Q E + LK I L H+LF GPPG GKT+ A +AR L Sbjct: 31 VEKYRPKTVDDVAHQDEVTNTLKGAIATG-----VLPHLLFYGPPGTGKTSTALALARTL 85 >gi|261415785|ref|YP_003249468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372241|gb|ACX74986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327080|gb|ADL26281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter succinogenes subsp. succinogenes S85] Length = 417 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L VGP G GKT LAQ +AR L V F V+ +AG D+ +++ L Sbjct: 120 NLLLVGPTGSGKTLLAQTMARFLDVPFTIADATVLTEAGYVGEDVDSIIVRLLQAADYDV 179 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 180 AKAERGIIFIDEIDKIA 196 >gi|313125920|ref|YP_004036190.1| ATPase AAA [Halogeometricum borinquense DSM 11551] gi|312292285|gb|ADQ66745.1| AAA family ATPase, CDC48 subfamily [Halogeometricum borinquense DSM 11551] Length = 754 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108 VL GPPG GKT +A+ VA E+ +F + SGP I G+ L + ED + + Sbjct: 227 VLLHGPPGTGKTLIAKAVANEIDASFHTISGPEIMSKYYGESEEQLREIFEDAEENAPAI 286 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 287 VFIDEIDSIA 296 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 500 VLLYGPPGTGKTLLAKAVANEADSNFISVKGP 531 >gi|291287208|ref|YP_003504024.1| ATP-dependent metalloprotease FtsH [Denitrovibrio acetiphilus DSM 12809] gi|290884368|gb|ADD68068.1| ATP-dependent metalloprotease FtsH [Denitrovibrio acetiphilus DSM 12809] Length = 619 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 191 VLLVGPPGTGKTLLARAVAGEAGVPFYSISG 221 >gi|257388390|ref|YP_003178163.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286] gi|257170697|gb|ACV48456.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286] Length = 703 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E GVNF +GP Sbjct: 489 VLLYGPPGTGKTLLARAIAGESGVNFIHVNGP 520 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 54/126 (42%), Gaps = 20/126 (15%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFV 60 S + + E ADI + E+ G E ++ IE + E VL Sbjct: 180 SEDEATETADIDV----NYEDIGGLDEELDQIREMIEMPLSEPERFRRLGIDPPSGVLLH 235 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGD----LAALLTNLEDR--DVLFID 112 GPPG GKT +A+ VA E+ F + SGP I G+ L ED +LFID Sbjct: 236 GPPGTGKTLIARAVANEVDAYFDTISGPEIVSKYKGESEERLREAFERAEDNAPSILFID 295 Query: 113 EIHRLS 118 EI ++ Sbjct: 296 EIDSIA 301 >gi|289580089|ref|YP_003478555.1| ATPase AAA, CDC48 subfamily [Natrialba magadii ATCC 43099] gi|289529642|gb|ADD03993.1| AAA family ATPase, CDC48 subfamily [Natrialba magadii ATCC 43099] Length = 754 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 29/154 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108 VL GPPG GKT +A+ VA E+ +F++ SGP I L + E+ + Sbjct: 228 VLLHGPPGTGKTLMAKAVANEIDADFQTISGPEIMSKYYGESEEQLREVFEEAEENAPAI 287 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ-------LDLMVGEGPSARSVKINLSRFTLIAATT 161 +FIDE+ ++ EE A D + L LM +G R R T+IAAT Sbjct: 288 VFIDELDSIAAKREE----AGGDVERRVVAQLLSLM--DGLEER------GRVTVIAATN 335 Query: 162 RVGLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQ 193 R+ + L+ RF I + + + K I+Q Sbjct: 336 RIDDIDPALRRGGRFDREIEIGVPDKDGRKEILQ 369 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A VL GPPG GKT LA+ VA E NF S GP Sbjct: 496 QAAKGVLMYGPPGTGKTLLAKAVANEAQSNFISIKGP 532 >gi|158334765|ref|YP_001515937.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158305006|gb|ABW26623.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 635 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G E+ + L+ +E K+ A+ VL VGPPG GKT +A+ VA E Sbjct: 166 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 225 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G AA + +L ++ ++FIDE+ Sbjct: 226 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDEL 269 >gi|241662241|ref|YP_002980601.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D] gi|240864268|gb|ACS61929.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D] Length = 605 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARGQAPAI 252 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 253 IFIDELDALG 262 >gi|21227358|ref|NP_633280.1| CdcH protein [Methanosarcina mazei Go1] gi|20905716|gb|AAM30952.1| CdcH protein [Methanosarcina mazei Go1] Length = 751 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL---EDRD---V 108 VL GPPG GKT +A+ VA E NF + SGP I G+ L + ++D + Sbjct: 213 VLLHGPPGTGKTMIAKAVASETDANFITISGPEIVSKYYGESEQKLREIFEEAEKDAPSI 272 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 273 IFIDEIDSIA 282 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 485 VLLFGPPGTGKTLLAKAVANESEANFISIKGP 516 >gi|320101277|ref|YP_004176869.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM 2162] gi|319753629|gb|ADV65387.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM 2162] Length = 730 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G NF + GP Sbjct: 492 VLLYGPPGCGKTLLAKAVATESGANFIAVKGP 523 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ +A E+ F + +GP I Sbjct: 212 ILLYGPPGTGKTLLAKALANEVNAYFITINGPEI 245 >gi|314968427|gb|EFT12525.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL037PA1] Length = 429 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 120 NILMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDV 179 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 180 KRAERGIVYIDEIDKVA 196 >gi|326782893|ref|YP_004323291.1| clamp loader subunit [Prochlorococcus phage P-RSM4] gi|310004152|gb|ADO98546.1| clamp loader subunit [Prochlorococcus phage P-RSM4] Length = 313 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 15/121 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ +E+ + K FI+ + + ++L G G+GKTT+A+ + ELG ++ Sbjct: 11 RPKNVEQCILPESVKTTFKSFIQQGE-----IPNLLLSGTAGVGKTTIAKALCHELGADY 65 Query: 83 RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +G V +A + AA LT VL IDE + V+ +L ++E+F Sbjct: 66 YVINGSDEGRFLDTVRNQAKNFAATVSLTAEAKHKVLIIDEADNTTPDVQLLLRASIEEF 125 Query: 133 Q 133 Q Sbjct: 126 Q 126 >gi|317057634|ref|YP_004106101.1| ATPase [Ruminococcus albus 7] gi|315449903|gb|ADU23467.1| ATPase associated with various cellular activities AAA_3 [Ruminococcus albus 7] Length = 313 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 64/155 (41%), Gaps = 26/155 (16%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------- 106 HVL PG GKTTLA + R +G+ FR A D+ E + Sbjct: 35 HVLLEDTPGTGKTTLALALTRTMGLRFRRIQMTPDTTASDITGYSAYDEGKGEFVYHEGA 94 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS-RFTLIAA--- 159 D+L DE++R S + L AME+ G + + LS FT+IA Sbjct: 95 AMTDLLLADELNRTSGRTQAALLEAMEE--------RGLTVDGITHELSPYFTVIATQNP 146 Query: 160 TTRVGLLTNPLQ--DRFGIPIRLNFYEIEDLKTIV 192 T G PL DRF +RL + E LK ++ Sbjct: 147 TGTAGTSAIPLSQLDRFMERLRLGAPDREALKRLI 181 >gi|256848388|ref|ZP_05553831.1| ATP-dependent metalloprotease FtsH [Lactobacillus coleohominis 101-4-CHN] gi|256714986|gb|EEU29964.1| ATP-dependent metalloprotease FtsH [Lactobacillus coleohominis 101-4-CHN] Length = 708 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 228 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKNAPSI 287 Query: 109 LFIDEI 114 +FIDEI Sbjct: 288 IFIDEI 293 >gi|238879894|gb|EEQ43532.1| conserved hypothetical protein [Candida albicans WO-1] Length = 1078 Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 38/189 (20%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGP------------ 88 FI K +L GPPG GKT++A+ +A L + R G Sbjct: 529 FISVGKISGNVDGKILCLAGPPGTGKTSIAKSIAEALNRKYTRIAVGGVQDVHDVKGHRR 588 Query: 89 --VIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137 V + G + LT + + ++ IDEI +L EIL P + +D Sbjct: 589 TYVASIPGRIVTALTQAKTSNPLMLIDEIDKLDTTSHGGAARAFLEILDPEQNNSFVDNF 648 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194 + VK++LS+ + +G + PL+DR I I +N Y D I +R Sbjct: 649 I-------EVKVDLSKVLFVCTANYLGSIPGPLRDRMEI-IEVNGYTKNDKIEITKRHLI 700 Query: 195 --GAKLTGL 201 AK GL Sbjct: 701 PAAAKKVGL 709 >gi|224062519|ref|XP_002196825.1| PREDICTED: similar to spermatogenesis associated 5-like 1 [Taeniopygia guttata] Length = 939 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 11/75 (14%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNL--------- 103 + VL +GPPG+GKT + + VA+ELG SGP + ++ G+ L + Sbjct: 231 NGVLLIGPPGVGKTLMVKAVAKELGAYLFGISGPALHGSRPGEGEENLRRVFEKGREMSN 290 Query: 104 EDRDVLFIDEIHRLS 118 E +LF DEI L Sbjct: 291 EGPTILFFDEIDSLC 305 >gi|196229299|ref|ZP_03128164.1| ATPase associated with various cellular activities AAA_5 [Chthoniobacter flavus Ellin428] gi|196226531|gb|EDY21036.1| ATPase associated with various cellular activities AAA_5 [Chthoniobacter flavus Ellin428] Length = 205 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 11/63 (17%) Query: 22 LRPRTLEEFTGQVEA-CSNLKVFIEAAKARA-----EALDHVLFVGPPGLGKTTLAQVVA 75 RP++ ++ GQ + C+ +A+KAR A +L GPPG+GKTT+A++VA Sbjct: 3 WRPQSADDLIGQARSVCA-----AQASKARRVRDVRNAACKLLLYGPPGVGKTTVAELVA 57 Query: 76 REL 78 REL Sbjct: 58 REL 60 >gi|126180097|ref|YP_001048062.1| AAA family ATPase, CDC48 subfamily protein [Methanoculleus marisnigri JR1] gi|125862891|gb|ABN58080.1| AAA family ATPase, CDC48 subfamily [Methanoculleus marisnigri JR1] Length = 805 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL-EDR-----DV 108 VL GPPG GKT +A+ VA E G +F S +GP VI+K G+ L + ED + Sbjct: 221 VLLYGPPGTGKTLIAKAVASESGAHFISIAGPEVISKYYGESEQRLREVFEDARQHAPAI 280 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ EE+ Sbjct: 281 IFIDELDSIAPRREEV 296 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E G NF GP Sbjct: 494 VLLYGPPGTGKTLIAKAVASESGANFVPVKGP 525 >gi|68070867|ref|XP_677347.1| ATPase [Plasmodium berghei strain ANKA] gi|56497430|emb|CAH94807.1| ATPase, putative [Plasmodium berghei] Length = 690 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ ++ E+ NF + GP I Sbjct: 292 ILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEI 325 >gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter thermautotrophicus str. Delta H] gi|42559322|sp|O26343|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit; AltName: Full=mthRFC small subunit gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter thermautotrophicus str. Delta H] Length = 321 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 6/64 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81 RP+ L++ GQ LK ++E +++ +++F GP G+GKTT A +ARE LG Sbjct: 13 RPQKLDDIVGQEHIIPRLKRYVEE-----KSMPNLMFTGPAGVGKTTAALALAREILGEY 67 Query: 82 FRST 85 +R Sbjct: 68 WRQN 71 >gi|298208941|ref|YP_003717120.1| DNA polymerase III subunit gamma/tau [Croceibacter atlanticus HTCC2559] gi|83848868|gb|EAP86737.1| DNA polymerase III subunit gamma/tau [Croceibacter atlanticus HTCC2559] Length = 600 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 113/288 (39%), Gaps = 64/288 (22%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP T + GQ +A +N V A+AL LF GP G+GKTT A+++A+++ Sbjct: 12 RPTTFADVVGQ-QAITNTLVNAIENNHLAQAL---LFTGPRGVGKTTCARILAKKI---- 63 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI--------------HRLSIIVEEILYPA 128 + G +A+ D A + L+ +D+I H I++E+ + Sbjct: 64 -NQDGTDVAEDEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGHYKVYIIDEVHMLS 122 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 F L E P ++ I ATT + IP L+ +I D Sbjct: 123 QAAFNAFLKTLEEPPKHAI--------FILATTEKHKI---------IPTILSRCQIFDF 165 Query: 189 KTIVQRGAKL--------TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 K I AK G+ D+A IA ++ G R A + RV F+ Sbjct: 166 KRITVTDAKQYLANIAEKEGVNAEDDALHIIAQKADGAMRDALSIYDRVVSFS----GNN 221 Query: 241 ITREIADAALLRLAIDKMGFDQLD-----------LRYLTMIARNFGG 277 +TR+ L L D F+ D +++ T++++ F G Sbjct: 222 LTRQAVTENLNVLDYDTY-FEMTDHILNNNIPEALVQFNTILSKGFDG 268 >gi|253576848|ref|ZP_04854173.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. oral taxon 786 str. D14] gi|251843715|gb|EES71738.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. oral taxon 786 str. D14] Length = 709 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 203 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262 Query: 109 LFIDEI 114 +FIDEI Sbjct: 263 IFIDEI 268 >gi|293337100|ref|NP_001168382.1| hypothetical protein LOC100382151 [Zea mays] gi|223947901|gb|ACN28034.1| unknown [Zea mays] Length = 710 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L + R + Sbjct: 259 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 318 Query: 109 LFIDEI 114 +FIDEI Sbjct: 319 IFIDEI 324 >gi|218885163|ref|YP_002434484.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756117|gb|ACL07016.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 671 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE + VE SN + F + VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 163 EELSEVVEFLSNPRKF---TRLGGRIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISG 219 >gi|310600|gb|AAA72002.1| ATPase [Sulfolobus acidocaldarius] Length = 780 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 524 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 557 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ + E+G F + +GP I Sbjct: 249 ILLYGPPGTGKTLLARALRNEIGAYFITVNGPEI 282 >gi|71414095|ref|XP_809162.1| replication factor C, subunit 4 [Trypanosoma cruzi strain CL Brener] gi|70873501|gb|EAN87311.1| replication factor C, subunit 4, putative [Trypanosoma cruzi] Length = 144 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+++E+ G +A S L+V ++ L ++L GPPG GKTT +AR L Sbjct: 13 RPKSMEDIVGNADAVSRLRVI-----SKEGNLPNLLLCGPPGTGKTTSVLCLARTL 63 >gi|260494910|ref|ZP_05815039.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp. 3_1_33] gi|260197353|gb|EEW94871.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp. 3_1_33] Length = 482 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 35/248 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + E +G+ E +LK+ ++ K+ A A LF GP G+GKTT+A+++A+ GVN Sbjct: 10 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTVARLIAK--GVNC 63 Query: 83 RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + +G + + A+ L ++ IDEI L E+I Y +E + Sbjct: 64 LNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120 Query: 134 LDLMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNF-- 182 ++ E N TL I ATT + + + R R +F Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPTIISRCQ---RYDFKP 177 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 ++E++K+ ++ K L++TD+ I S G+ R + +L R+ A+ K I Sbjct: 178 LDLEEMKSGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERL---IVTANGKEIN 234 Query: 243 REIADAAL 250 +IA+ L Sbjct: 235 LKIAEDTL 242 >gi|119597249|gb|EAW76843.1| peroxisome biogenesis factor 1, isoform CRA_d [Homo sapiens] Length = 549 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA V+ARE +NF S GP Sbjct: 171 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 202 >gi|10640840|emb|CAC12618.1| probable replication factor C, 40 KD subunit [Thermoplasma acidophilum] Length = 330 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 37/230 (16%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78 RP++L E G+ E LK F+E + + H+LF G G GKT+ A +A EL Sbjct: 22 RPKSLSEIYGEDENIQKLKSFVEKKE-----IPHLLFAGSVGTGKTSTAIALAIELFGDS 76 Query: 79 ------GVNFRSTSG--PVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 +N + +G + K D+A + +N +LF+DE +L+ + L M Sbjct: 77 WKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFKILFLDEADQLTAEAQAALRRTM 136 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 E + +RF I + + P+Q R + +R E + Sbjct: 137 EIYS----------------ETTRF--IFSCNYSSKIIPPIQSR-TVVMRFRPVPDEYIS 177 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 +Q AK G + +E+ + S G R A +L+ V E++ K Sbjct: 178 RKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQAVYTSGEISPKK 227 >gi|73920780|sp|Q07590|SAV_SULAC RecName: Full=Protein SAV Length = 780 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 524 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 557 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ +A E+G F + +GP I Sbjct: 249 ILLYGPPGTGKTLLARALANEIGAYFITVNGPEI 282 >gi|58617205|ref|YP_196404.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia ruminantium str. Gardel] gi|58416817|emb|CAI27930.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia ruminantium str. Gardel] Length = 764 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 23/148 (15%) Query: 6 GLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFV 60 G+ SRN++ D D + L + GQ A S+L I+ AKA + L LF Sbjct: 446 GIPSRNLAHNDLDKVKNLEKNLKQHIFGQDFAISSLVDSIKIAKAGLRDHRKPLASYLFT 505 Query: 61 GPPGLGKTTLAQVVARELGVNF-----------RSTSGPVIAKAG----DLAALLTNLED 105 GP G+GKT LA+ +A +G+ S S + + G D LLT+ Sbjct: 506 GPTGVGKTELAKQLANHMGMKLIRFDMSEYMESHSISKIIGSPPGYVGYDQGGLLTDSIS 565 Query: 106 R---DVLFIDEIHRLSIIVEEILYPAME 130 R VL +DEI + + IL M+ Sbjct: 566 RHQYSVLLLDEIEKAHSDIYNILLQIMD 593 >gi|332665521|ref|YP_004448309.1| ATP-dependent metalloprotease FtsH [Haliscomenobacter hydrossis DSM 1100] gi|332334335|gb|AEE51436.1| ATP-dependent metalloprotease FtsH [Haliscomenobacter hydrossis DSM 1100] Length = 665 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 233 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 263 >gi|331003804|ref|ZP_08327296.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae oral taxon 107 str. F0167] gi|330411996|gb|EGG91393.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae oral taxon 107 str. F0167] Length = 427 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 28/129 (21%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIE------AAKARAEA---LDHVLFVGPP 63 DI+LL+P+ ++ F GQ A L V + +K AE ++L +GP Sbjct: 59 DINLLKPKEIKNFLDEYVIGQDSAKKVLSVAVYNHYKRIKSKKSAEVEIQKSNILMLGPT 118 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------VL 109 G GKT LAQ +A+ L V F + +AG D+ +L L D D ++ Sbjct: 119 GSGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAADGDINRAEYGII 178 Query: 110 FIDEIHRLS 118 +IDEI +++ Sbjct: 179 YIDEIDKIT 187 >gi|327539583|gb|EGF26192.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica WH47] Length = 651 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 105/260 (40%), Gaps = 45/260 (17%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPR + GQ L+ IE ++ + H LF G G+GKT+ A++ A+ L Sbjct: 20 RPRDFTQLVGQDHVARALQGAIETSR-----VGHAYLFTGARGVGKTSTARIFAKALNHP 74 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 T+ P D+A + + ED DV+ ID I +EI L VG Sbjct: 75 DGPTANP--DNESDVAQAIDSGEDVDVIEIDGASNRGI--DEIR-------SLRANVGVR 123 Query: 142 PSARSVKI----NLSRFTLIAATTRVGLLTNPLQ---------DRFGIPI-------RLN 181 PS KI + T A + L P + D IPI R + Sbjct: 124 PSRSRYKIYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFD 183 Query: 182 FYEIEDLKTIVQRGAKLTGL---AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE---- 234 F +E K IVQR ++ V DEA +A R+ G+ R + LL +V F++ Sbjct: 184 FAPVESDK-IVQRLREIVEAEDNTVEDEALELLARRAAGSMRDSQSLLEQVLSFSDGHLT 242 Query: 235 VAHAKTITREIADAALLRLA 254 H T+ D L RLA Sbjct: 243 ADHVHTMLGTADDQRLHRLA 262 >gi|295107774|emb|CBL21727.1| ATP-dependent metalloprotease FtsH [Ruminococcus obeum A2-162] Length = 630 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 15/103 (14%) Query: 27 LEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 + G+ EA NL+ ++ K A VL VGPPG GKT LA+ VA E Sbjct: 165 FSDVAGEEEAKENLQEIVDYLHNPEKYTKVGASMPKGVLLVGPPGTGKTMLAKAVAGESN 224 Query: 80 VNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 V F S SG + A + L +++ ++FIDEI Sbjct: 225 VPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 267 >gi|242053361|ref|XP_002455826.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor] gi|241927801|gb|EES00946.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor] Length = 710 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L + R + Sbjct: 259 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 318 Query: 109 LFIDEI 114 +FIDEI Sbjct: 319 IFIDEI 324 >gi|218296645|ref|ZP_03497363.1| ATP-dependent protease La [Thermus aquaticus Y51MC23] gi|218242958|gb|EED09491.1| ATP-dependent protease La [Thermus aquaticus Y51MC23] Length = 804 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 86/226 (38%), Gaps = 49/226 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100 +LFVGPPG+GKT++A+ +A LG + S + D + L Sbjct: 358 LLFVGPPGVGKTSIAKSIAEALGRKYVRISLGGVRDESDIRGHRRTYIGAMPGRIIQGLR 417 Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V +DE+ +L I + E+L PA +D +G V +LS Sbjct: 418 QAGTKNPVFLLDEVDKLGISYQGDPAAALLEVLDPAQNKEFVDHYLG-------VPFDLS 470 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEAA 208 I + PL DR ++ E E L + ++ R + TGL+ Sbjct: 471 EVMFICTANFPQNIPAPLMDRMEAIEFTSYIEQEKLEIAKRYLLPRQMRETGLSEGQVVV 530 Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 E A L+R + + A + + REI ALLR A Sbjct: 531 TEAA------------LMRLITHYTREAGVRQLEREI--GALLRKA 562 >gi|167390711|ref|XP_001739466.1| replication factor C subunit [Entamoeba dispar SAW760] gi|165896845|gb|EDR24167.1| replication factor C subunit, putative [Entamoeba dispar SAW760] Length = 539 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP T + G +LK FI A + + H+LF GPPG GKTT A + ++L G Sbjct: 10 RPSTTDGIFGHEYILESLKQFINANQ-----IPHMLFYGPPGTGKTTTALAIVKQLCGTK 64 Query: 82 FRS 84 F + Sbjct: 65 FSA 67 >gi|291238456|ref|XP_002739147.1| PREDICTED: TER94-like [Saccoglossus kowalevskii] Length = 1200 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 9/71 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107 +L GPPG GKT LA+ VA E NF S GP + + N++D Sbjct: 920 MLLYGPPGCGKTLLAKAVANECRANFLSVGGPELMAMPFGHTAMDNVKDLYNKARLASPC 979 Query: 108 VLFIDEIHRLS 118 +LF DE+ +S Sbjct: 980 ILFFDEMDSIS 990 Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 13/127 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI----AKAG----DLAALLTNLEDRDV 108 +L GP G GKT + + +A E + GP I A+AG +L + + Sbjct: 641 ILLTGPSGSGKTMIGKSLANETDASIMFIDGPDIVSKCAEAGVSVLELVFIDAEKNQPSI 700 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 +FID I L+ ++I A D Q+ G + NLSR +I AT L + Sbjct: 701 VFIDAIDGLA-GKDDI---AHSDVQMKCASFLGTRMDRIHNNLSRVVVIGATENSSRL-D 755 Query: 169 PLQDRFG 175 P RFG Sbjct: 756 PRLRRFG 762 >gi|189485278|ref|YP_001956219.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287237|dbj|BAG13758.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 531 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 10/93 (10%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP+ +E GQ LK I + K A A LF GP G GKTT+A+++A+ L Sbjct: 10 FRPQNFDEVVGQEHISQTLKNSI-SEKRIAHAY---LFSGPRGCGKTTMARILAKALNCK 65 Query: 82 FRSTSGPVIAKAG--DLAALLTNLEDRDVLFID 112 +GP I G + ++ DVL ID Sbjct: 66 ----NGPTIKPCGVCENCVEISKSSSVDVLEID 94 >gi|159029290|emb|CAO90156.1| ftsH3 [Microcystis aeruginosa PCC 7806] Length = 625 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 205 VLLVGPPGTGKTLLAKAVAGEAGVAFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCI 264 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 265 IFIDEL 270 >gi|118443161|ref|YP_877130.1| ATP-dependent metalloprotease FtsH [Clostridium novyi NT] gi|310943127|sp|A0PXM8|FTSH_CLONN RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|118133617|gb|ABK60661.1| ATP-dependent metalloprotease FtsH [Clostridium novyi NT] Length = 676 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78 T ++ G E L+ ++ K + LD +L VGPPG GKT LA+ VA E Sbjct: 166 TFKDVAGADEEKGELEEIVDFLKEPKKYLDMGARIPKGILLVGPPGTGKTLLAKAVAGEA 225 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 226 GVPFFSISG 234 >gi|121593622|ref|YP_985518.1| ATP-dependent protease ATP-binding subunit ClpX [Acidovorax sp. JS42] gi|222110342|ref|YP_002552606.1| ATP-dependent protease ATP-binding subunit clpx [Acidovorax ebreus TPSY] gi|166214752|sp|A1W5B7|CLPX_ACISJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763845|sp|B9MG15|CLPX_ACIET RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|120605702|gb|ABM41442.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax sp. JS42] gi|221729786|gb|ACM32606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax ebreus TPSY] Length = 421 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 117 NILLIGPTGSGKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYDV 176 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 ERAQRGIVYIDEIDKIS 193 >gi|60735079|dbj|BAD91025.1| valosin containing protein-2 [Eisenia fetida] gi|147225258|dbj|BAF62456.1| valosine containing peptide-2 [Eisenia fetida] Length = 763 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VLF GPPG GKT LA+ +A + NF S GP Sbjct: 507 VLFYGPPGCGKTLLAKAIATQCQANFISIKGP 538 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108 VL GPPG GKT +A+ VA E GV F +GP I GD A L + + Sbjct: 235 VLMYGPPGTGKTLIARAVANETGVYFIVINGPDIMSKWFGDSEANLRKIFETAEANSPSI 294 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 295 IFIDEM 300 >gi|268569884|ref|XP_002648361.1| C. briggsae CBR-RFC-4.2 protein [Caenorhabditis briggsae] gi|268573696|ref|XP_002641825.1| C. briggsae CBR-RFC-4.1 protein [Caenorhabditis briggsae] gi|187040034|emb|CAP21143.1| CBR-RFC-4.2 protein [Caenorhabditis briggsae AF16] Length = 335 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ Q E + LK + + L H+LF GPPG GKT+ A R+L Sbjct: 23 RPKTLDDIAHQEEVVTMLK-----GALQGKDLPHLLFYGPPGTGKTSTALAFCRQL 73 >gi|268567908|ref|XP_002647902.1| Hypothetical protein CBG23770 [Caenorhabditis briggsae] gi|187040787|emb|CAP20535.1| hypothetical protein CBG_23770 [Caenorhabditis briggsae AF16] Length = 299 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP L E + L FIE L H+LF GPPG GKTT AR++ Sbjct: 178 RPSKLNELVAHEQVVKTLTKFIEN-----RTLPHLLFYGPPGTGKTTTVLAAARKM 228 >gi|148256655|ref|YP_001241240.1| cell division protein FtsH [Bradyrhizobium sp. BTAi1] gi|146408828|gb|ABQ37334.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1] Length = 615 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 195 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARAKAPAI 254 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 255 IFIDELDAL 263 >gi|83286709|ref|XP_730279.1| cell division cycle protein 48 [Plasmodium yoelii yoelii str. 17XNL] gi|23489959|gb|EAA21844.1| cell division cycle protein 48 homolog [Plasmodium yoelii yoelii] Length = 713 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ ++ E+ NF + GP I Sbjct: 307 ILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEI 340 >gi|332027262|gb|EGI67346.1| Protein YME1-like protein [Acromyrmex echinatior] Length = 749 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG GKT LA+ VA E GV F +GP Sbjct: 344 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGP 375 >gi|331083658|ref|ZP_08332769.1| hypothetical protein HMPREF0992_01693 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403869|gb|EGG83421.1| hypothetical protein HMPREF0992_01693 [Lachnospiraceae bacterium 6_1_63FAA] Length = 603 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228 >gi|327481003|gb|AEA84313.1| ATP-dependent metalloprotease FtsH [Pseudomonas stutzeri DSM 4166] Length = 626 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARGQAPAI 252 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 253 IFIDELDAL 261 >gi|260587358|ref|ZP_05853271.1| cell division protein FtsH [Blautia hansenii DSM 20583] gi|260542225|gb|EEX22794.1| cell division protein FtsH [Blautia hansenii DSM 20583] Length = 567 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 162 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 192 >gi|294656651|ref|XP_458947.2| DEHA2D11088p [Debaryomyces hansenii CBS767] gi|218511754|sp|Q6BS73|PEX6_DEBHA RecName: Full=Peroxisomal biogenesis factor 6; AltName: Full=Peroxin-6 gi|199431634|emb|CAG87108.2| DEHA2D11088p [Debaryomyces hansenii] Length = 1198 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 875 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 906 >gi|158301096|ref|XP_320860.4| AGAP011652-PA [Anopheles gambiae str. PEST] gi|157013476|gb|EAA00408.4| AGAP011652-PA [Anopheles gambiae str. PEST] Length = 749 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----V 108 +L GPPG KTTLA+ +A E G+ F S S + GD L+T + E R V Sbjct: 509 ILLYGPPGCAKTTLAKCLAAETGMTFLSLSAAQVYSPYVGDAEKLITRVFNEARTNAPAV 568 Query: 109 LFIDEIHRL 117 +F+DEI L Sbjct: 569 VFLDEIDSL 577 >gi|150865419|ref|XP_001384629.2| peroxisomal assembly protein [Scheffersomyces stipitis CBS 6054] gi|149386675|gb|ABN66600.2| peroxisomal assembly protein [Scheffersomyces stipitis CBS 6054] Length = 1178 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 864 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 895 >gi|115655395|ref|XP_790650.2| PREDICTED: similar to replication factor C, 40-kDa subunit [Strongylocentrotus purpuratus] gi|115928698|ref|XP_001184083.1| PREDICTED: similar to replication factor C, 40-kDa subunit [Strongylocentrotus purpuratus] Length = 352 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 6/81 (7%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 + G ++ S E + RP +L + G E S L+VF +R + +V+ GPP Sbjct: 21 KAGGSGKSASYEMPWVEKYRPTSLSDVVGNEETVSRLEVF-----SREGNVPNVIIAGPP 75 Query: 64 GLGKTTLAQVVARE-LGVNFR 83 G GKTT +AR LG +F+ Sbjct: 76 GTGKTTSILCLARTMLGASFK 96 >gi|325272001|ref|ZP_08138448.1| ATP-dependent protease La [Pseudomonas sp. TJI-51] gi|324102868|gb|EGC00268.1| ATP-dependent protease La [Pseudomonas sp. TJI-51] Length = 806 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 388 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 447 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 448 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 496 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 497 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLQKAGVAK 555 Query: 199 TGLAVTDEA---ACEIAMRSRGTPRIAGRLLRRVR 230 L+++D A E R G ++ +L + VR Sbjct: 556 ASLSISDSALRTVIEGYAREAGVRQLEKQLGKLVR 590 >gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3] gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3] Length = 329 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 +E+ + RP TL E GQ E L+ ++E + L ++LF G G+GKTT A Sbjct: 14 REEIWVEKYRPGTLGEVIGQEEITDRLERYVER-----DDLPNLLFSGSAGIGKTTCATA 68 Query: 74 VAREL-GVNFR 83 +ARE+ G ++R Sbjct: 69 IAREVYGEDWR 79 >gi|258567588|ref|XP_002584538.1| ATP-dependent protease La [Uncinocarpus reesii 1704] gi|237905984|gb|EEP80385.1| ATP-dependent protease La [Uncinocarpus reesii 1704] Length = 900 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 21/167 (12%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100 K+ + +K + + +L VGPPG GKT+LA+ VA LG F S A ++ Sbjct: 446 KLQVLKSKRKTDKSPILLLVGPPGTGKTSLAKSVATSLGRRFHRISLGRTYVAAMPGLIV 505 Query: 101 TNLED----RDVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 L+ V +DEI ++ S + E+L P D + ++ Sbjct: 506 NGLKKVGVANPVFLLDEIDKVGGANFHGDPSAAMLEVLDPEQNHSFSDHYI-------NI 558 Query: 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 I+LS+ IA + + PL DR I+L+ Y + + I +R Sbjct: 559 PIDLSKVLFIATANSLDTIPAPLLDRMET-IQLSGYTTIEKRHIARR 604 >gi|289807880|ref|ZP_06538509.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 34 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/28 (75%), Positives = 22/28 (78%) Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREI 245 TPRIA RLLRRVRDFAEV H I+ EI Sbjct: 6 TPRIANRLLRRVRDFAEVKHDGAISAEI 33 >gi|61806033|ref|YP_214393.1| clamp loader subunit [Prochlorococcus phage P-SSM2] gi|61374542|gb|AAX44539.1| clamp loader subunit [Prochlorococcus phage P-SSM2] gi|265525243|gb|ACY76040.1| sliding clamp loader [Prochlorococcus phage P-SSM2] Length = 313 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 15/120 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T+EE + F+ + + ++L GPPG+GKTT+A+ + +LG ++ Sbjct: 11 RPQTIEECILPESTKKMFQDFLSKGE-----IPNMLLSGPPGIGKTTVAKCLCNQLGADY 65 Query: 83 RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +G V A + A+ LT+ V+ IDE + V+ +L ++E+F Sbjct: 66 YVINGSDEGRFLDTVRNNAKNFASTVSLTSESKHKVIIIDEADNTTPDVQLLLRASIEEF 125 >gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana) tropicalis] gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana) tropicalis] gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana) tropicalis] Length = 335 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ + S ++ FI K L H+LF GPPG GKT+ A++L Sbjct: 22 RPQTLDDLISHQDILSTIQRFISEDK-----LPHLLFYGPPGTGKTSTILACAKQL 72 >gi|15920578|ref|NP_376247.1| hypothetical protein ST0376 [Sulfolobus tokodaii str. 7] gi|15621361|dbj|BAB65356.1| 747aa long hypothetical SAV protein [Sulfolobus tokodaii str. 7] Length = 747 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 491 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 524 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ +A E+G +F + +GP I G+ L + + + Sbjct: 216 ILLYGPPGNGKTLLARALANEVGASFYTINGPEIMSKFYGESEQRLREIFEEAQKNAPAI 275 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 276 IFIDEIDSIAPKREEV 291 >gi|325095497|gb|EGC48807.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H88] Length = 751 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N ++ A+ A VL GPPG GKT LA+ VA Sbjct: 490 ADIGALSGVRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 546 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 547 ESRANFISVKGP 558 Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT +A A ELGV F + S P I +G+ L D + Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCL 273 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 274 IFIDEIDAIT 283 >gi|322800491|gb|EFZ21495.1| hypothetical protein SINV_13651 [Solenopsis invicta] Length = 723 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG GKT LA+ VA E GV F +GP Sbjct: 323 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGP 354 >gi|269986895|gb|EEZ93171.1| Microtubule-severing ATPase [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 763 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 8/75 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E +F + +GP V++K GD L + D + Sbjct: 250 VLLYGPPGTGKTLLARAVADESEAHFITINGPEVMSKWVGDAEKKLREIFDDAEKNAPSI 309 Query: 109 LFIDEIHRLSIIVEE 123 +FIDEI ++ EE Sbjct: 310 IFIDEIDAIATKREE 324 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E NF + GP I G+ + + D+ + Sbjct: 524 ILLYGPPGTGKTLLARAVAHETESNFIAIKGPEIYNKYVGESEKRIREIFDKARQVSPSI 583 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 584 IFIDELDSIA 593 >gi|254560086|ref|YP_003067181.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens DM4] gi|254267364|emb|CAX23199.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens DM4] Length = 620 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 200 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARQRAPAI 259 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 260 IFIDELDALG 269 >gi|271970341|ref|YP_003344537.1| microtubule-severing ATPase [Streptosporangium roseum DSM 43021] gi|270513516|gb|ACZ91794.1| Microtubule-severing ATPase [Streptosporangium roseum DSM 43021] Length = 656 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +E +K F++A A+ +A+ VL GPPG GKT LA+ VA E GV F S SG Sbjct: 173 IEELQEIKEFLQAP-AKFQAIGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 230 >gi|224003639|ref|XP_002291491.1| atp-dependent serine protease [Thalassiosira pseudonana CCMP1335] gi|220973267|gb|EED91598.1| atp-dependent serine protease [Thalassiosira pseudonana CCMP1335] Length = 837 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 37/210 (17%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70 ++E+ DIS R + G E + FI K + +L GPPG GKT++ Sbjct: 339 TTKENFDISDARTVLDRDHYGMDEVKETILQFIAVGKLKGSVQGKILCLAGPPGTGKTSI 398 Query: 71 AQVVARELGVNF------------------RSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 A+ VA LG F R+ G + K + L + ++ ID Sbjct: 399 AESVAEALGRKFFRFSVGGMSDVSEIKGHRRTYVGAMPGKI--IQCLKSTGSSNPLVLID 456 Query: 113 EIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 EI +L + + E+L P+ D + + P +++S+ + + Sbjct: 457 EIDKLGRDFRGDPASALLEVLDPSQNSTFRDHFI-DAP------VDISKVLFMCTANELD 509 Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + PL DR + IRL+ Y++ + I Q+ Sbjct: 510 AIPGPLLDRMEV-IRLSGYDVPEKLEIAQQ 538 >gi|158334484|ref|YP_001515656.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158304725|gb|ABW26342.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 629 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G E+ + L+ +E K+ A+ VL VGPPG GKT +A+ VA E Sbjct: 168 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G AA + +L ++ ++FIDE+ Sbjct: 228 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDEL 271 >gi|154288250|ref|XP_001544920.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus NAm1] gi|150408561|gb|EDN04102.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus NAm1] Length = 712 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N ++ A+ A VL GPPG GKT LA+ VA Sbjct: 451 ADIGALSGVRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 507 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 508 ESRANFISVKGP 519 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A A ELGV F + S P I Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247 >gi|146339824|ref|YP_001204872.1| cell division protein FtsH-like protein [Bradyrhizobium sp. ORS278] gi|146192630|emb|CAL76635.1| Cell division protein ftsH homolog (ATP-dependent zinc-metallo protease) [Bradyrhizobium sp. ORS278] Length = 615 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 195 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARAKAPAI 254 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 255 IFIDELDAL 263 >gi|77164885|ref|YP_343410.1| peptidase S16, ATP-dependent protease La [Nitrosococcus oceani ATCC 19707] gi|254434556|ref|ZP_05048064.1| ATP-dependent protease La [Nitrosococcus oceani AFC27] gi|123594373|sp|Q3JBB6|LON_NITOC RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|76883199|gb|ABA57880.1| Peptidase S16, ATP-dependent protease La [Nitrosococcus oceani ATCC 19707] gi|207090889|gb|EDZ68160.1| ATP-dependent protease La [Nitrosococcus oceani AFC27] Length = 772 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 91/240 (37%), Gaps = 57/240 (23%) Query: 48 KARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL---------- 96 K EA +L FVGPPG+GKT++ Q +AR LG F S + +L Sbjct: 338 KLNPEAKSPILCFVGPPGVGKTSVGQSMARALGRKFERMSLGGLHDESELRGHRRTYIGA 397 Query: 97 ------AALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPA----MEDFQLDLMV 138 A+ +L +DEI +L + + EIL PA D LDL Sbjct: 398 MPGRIIRAIRRTGYQNPLLMLDEIDKLGRDFRGDPAAALLEILDPAQNAEFHDNYLDL-- 455 Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR---- 194 +LS+ + + + PL DR I +RL Y E+ + I +R Sbjct: 456 ---------PFDLSKIFFVTTANTLDTIPRPLLDRMEI-LRLPGYSDEEKQHIARRYLIG 505 Query: 195 ------GAKLTGLAVTDEAACEIAMRS------RGTPRIAGRLLRRVRDFAEVAHAKTIT 242 G L++ DE + R R R+ GR+ R+V + +T Sbjct: 506 RQIREAGLSEIQLSIPDETLSYLIRRYTREAGVRELERMLGRIARKVATQVATGQTQPVT 565 >gi|331697323|ref|YP_004333562.1| Shikimate kinase [Pseudonocardia dioxanivorans CB1190] gi|326952012|gb|AEA25709.1| Shikimate kinase [Pseudonocardia dioxanivorans CB1190] Length = 206 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/27 (66%), Positives = 22/27 (81%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF 82 V+FVGPPG GK+T+ +VVAR LGV F Sbjct: 7 SVVFVGPPGSGKSTVGKVVARRLGVAF 33 >gi|323344884|ref|ZP_08085108.1| ATP-dependent metalloprotease FtsH [Prevotella oralis ATCC 33269] gi|323094154|gb|EFZ36731.1| ATP-dependent metalloprotease FtsH [Prevotella oralis ATCC 33269] Length = 678 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 38/222 (17%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E GV F S SG V A + + +++ ++ Sbjct: 234 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKAPCII 293 Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-----------SRFTLIA 158 FIDEI + + P+M G R +N S ++A Sbjct: 294 FIDEIDAVGRARSK--NPSM----------GGNDERENTLNALLTEMDGFGTNSGVIVLA 341 Query: 159 ATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216 AT R +L L RF I ++ ++++ K I Q K V + + +I +R Sbjct: 342 ATNRADMLDKALLRAGRFDRQINVDLPDLQERKEIFQVHLK----PVKTDNSLDIDFLAR 397 Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258 TP +G + V + A + A+ ++ ++ L A+D++ Sbjct: 398 QTPGFSGADIANVCNEAALIAARHDSKTVSKQDFLD-AVDRI 438 >gi|310643603|ref|YP_003948361.1| ATP-dependent protease la-like protein [Paenibacillus polymyxa SC2] gi|309248553|gb|ADO58120.1| ATP-dependent protease La-like protein [Paenibacillus polymyxa SC2] Length = 634 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP TL++ GQ + LK + +A + HV+ GPPG+GKT A+VV E N Sbjct: 123 RPATLQDIVGQKDGLRALKAALCSANPQ-----HVIIYGPPGVGKTAAARVVLEEAKKNQ 177 Query: 83 RS 84 S Sbjct: 178 SS 179 >gi|307110220|gb|EFN58456.1| hypothetical protein CHLNCDRAFT_48527 [Chlorella variabilis] Length = 293 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 12/75 (16%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RPR++ E Q E L+ + + L H+LF GPPG GKTT A + R+L Sbjct: 7 VEKYRPRSIGEVAHQEEVVQTLQHALSSGN-----LPHLLFYGPPGTGKTTSALAIVRQL 61 Query: 79 GVNFRSTSGPVIAKA 93 GP + KA Sbjct: 62 -------FGPELCKA 69 >gi|291543931|emb|CBL17040.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus sp. 18P13] Length = 421 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 +VL +GP G+GKT LAQ +AR L V F I +AG + + N+ Sbjct: 115 NVLLLGPTGVGKTFLAQTLARTLDVPFAIADATTITEAGYVGDDVENVLLRLIQAANYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 175 EAAERGIIYIDEIDKIA 191 >gi|284161924|ref|YP_003400547.1| ATPase AAA [Archaeoglobus profundus DSM 5631] gi|284011921|gb|ADB57874.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus profundus DSM 5631] Length = 1217 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 8/89 (8%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK------AGDLAALLTNLEDRDVL 109 +L GPPG GKT LA+ VA E NF S GP +++K GD L VL Sbjct: 550 ILLYGPPGTGKTLLAKAVANEANANFISVKGPELLSKWVGESITGDEIVLAKVNGKLKVL 609 Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 +E++ + EEI P + F+ D +V Sbjct: 610 TAEELYNAWMNGEEIEIPCIR-FESDEVV 637 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ +F SGP I Sbjct: 219 VLLYGPPGTGKTLIAKAVANEVDAHFIPVSGPEI 252 >gi|269792563|ref|YP_003317467.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100198|gb|ACZ19185.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermanaerovibrio acidaminovorans DSM 6589] Length = 429 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +VL VGP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 123 NVLLVGPTGSGKTLLAQTLARLLKVPFAIADATTLTEAGYVGEDVENILVRLLQAADYDV 182 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 183 KAAERGIIYIDEIDKIS 199 >gi|119872197|ref|YP_930204.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum islandicum DSM 4184] gi|119673605|gb|ABL87861.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum islandicum DSM 4184] Length = 731 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E G NF + GP I G+ ++ + + V Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMAAPAV 550 Query: 109 LFIDEIHRLS 118 +FIDE+ L+ Sbjct: 551 IFIDEVDALA 560 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 16/115 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ +A ++ +E E H +L +GPPG GKT LA+ VA E Sbjct: 177 TWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAVANE 236 Query: 78 LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124 F + +GP I G+ A L + + ++FIDEI ++ EE+ Sbjct: 237 ANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 291 >gi|161525463|ref|YP_001580475.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC 17616] gi|189349804|ref|YP_001945432.1| cell division protease [Burkholderia multivorans ATCC 17616] gi|160342892|gb|ABX15978.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC 17616] gi|189333826|dbj|BAG42896.1| cell division protease [Burkholderia multivorans ATCC 17616] Length = 615 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARGQAPAI 252 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 253 IFIDELDAL 261 >gi|118431889|ref|NP_148637.2| cell division protein CDC48 [Aeropyrum pernix K1] gi|116063212|dbj|BAA81490.2| cell division control protein 48, AAA family [Aeropyrum pernix K1] Length = 737 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT LA+ VA E G NF + GP I Sbjct: 498 VLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 531 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E F S +GP I G+ L + + + Sbjct: 225 ILLYGPPGTGKTLLAKAVANEADAYFISINGPEIMSKYYGESEQRLREIFEEAKKNAPSI 284 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 285 IFIDEIDAIA 294 >gi|167949880|ref|ZP_02536954.1| ATP-dependent protease ATP-binding subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] gi|110589388|gb|ABG77203.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 329 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 29/135 (21%) Query: 13 SQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKARAEAL----------DHV 57 S E + SL RP +TL+++ GQ A L V + R E+L ++ Sbjct: 57 SGEKSSDSLPRPHEINKTLDQYVIGQQRAKKVLSVAVYNHYKRLESLGKESDIELAKSNI 116 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV-- 108 L +GP G GKT LA+ +AR L V F + +AG + + N+ D DV Sbjct: 117 LLIGPTGSGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEK 176 Query: 109 -----LFIDEIHRLS 118 ++IDEI ++S Sbjct: 177 AQTGIVYIDEIDKIS 191 >gi|327311898|ref|YP_004338795.1| TBP-interacting protein TIP49 [Thermoproteus uzoniensis 768-20] gi|326948377|gb|AEA13483.1| TBP-interacting protein TIP49 [Thermoproteus uzoniensis 768-20] Length = 458 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89 F GQ EA + ++ KA A VL VGPPG GKT LA +AREL S P Sbjct: 46 FVGQTEAREAAYMVVKMIKAGKFAGKGVLIVGPPGTGKTALAIGIAREL-----SEDTPF 100 Query: 90 IA-KAGDL 96 +A AG++ Sbjct: 101 VALSAGEI 108 >gi|326513256|dbj|BAK06868.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 782 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKTTLA +A E GV F S P + Sbjct: 238 ILLHGPPGCGKTTLAHAIANETGVPFYKISAPEV 271 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT--NLEDRDVL 109 L GPPG GKT +A+ VA + G NF GP V ++ + T + +L Sbjct: 543 LLFGPPGCGKTLIAKAVAHDAGANFIHIKGPELLNKYVGESESEVRKIFTRARINSPCIL 602 Query: 110 FIDEIHRLS 118 F DEI L+ Sbjct: 603 FFDEIDALT 611 >gi|319954406|ref|YP_004165673.1| DNA polymerase iii, subunits gamma and tau [Cellulophaga algicola DSM 14237] gi|319423066|gb|ADV50175.1| DNA polymerase III, subunits gamma and tau [Cellulophaga algicola DSM 14237] Length = 617 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 74/284 (26%), Positives = 116/284 (40%), Gaps = 47/284 (16%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T ++ GQ + L IE A+AL LF GP G+GKTT A+++A+++ + Sbjct: 12 RPQTFKDVVGQQAITNTLLNAIENNHL-AQAL---LFCGPRGVGKTTCARILAKKINEDG 67 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS--------------IIVEEILYPA 128 S D A + L+ +D+I L+ I++E+ + Sbjct: 68 SQHSD------EDYAFNIFELDAASNNSVDDIRSLTDQVRIPPQVGKYKVYIIDEVHMLS 121 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI--E 186 F L E P ++ I ATT + + R I +F I + Sbjct: 122 QSAFNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI---FDFKRITVK 170 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 D T ++ A+ G+ D+A IA ++ G R A + RV FA K +TR+ Sbjct: 171 DAATYLKYIAENQGIEAEDDALHIIAQKADGAMRDALSIFDRVVSFA----GKKLTRKAV 226 Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI-ETISAGL 289 L L D F DL ++A N G V ET++ G Sbjct: 227 TENLNVLDYDTY-FAATDL----ILAHNIPGLLVLFNETLAKGF 265 >gi|307243867|ref|ZP_07525992.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis DSM 17678] gi|306492689|gb|EFM64717.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis DSM 17678] Length = 631 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/30 (70%), Positives = 21/30 (70%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LAQ VA E GV F S SG Sbjct: 202 LLVGPPGTGKTLLAQAVAGEAGVPFFSISG 231 >gi|291244804|ref|XP_002742285.1| PREDICTED: replication factor C 4-like [Saccoglossus kowalevskii] Length = 288 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP++++E Q E + LK IE + L ++LF GPPG GKT+ VAREL Sbjct: 38 VEKYRPKSVDEVAFQDEVVAVLKKSIEGSD-----LPNLLFYGPPGTGKTSTILAVAREL 92 Query: 79 GVN--FRS 84 N FR+ Sbjct: 93 FGNEMFRT 100 >gi|269469209|gb|EEZ80743.1| ATP-dependent protease Clp, ATPase subunit [uncultured SUP05 cluster bacterium] Length = 418 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ ++ +L Sbjct: 109 NILMIGPTGSGKTLLAQTLARILDVPFTVADATTLTEAGYVGDDVENVIKSLLSRCDFDP 168 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI ++S Sbjct: 169 ERAERGIIFIDEIDKIS 185 >gi|255717520|ref|XP_002555041.1| KLTH0F19646p [Lachancea thermotolerans] gi|238936424|emb|CAR24604.1| KLTH0F19646p [Lachancea thermotolerans] Length = 1044 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 782 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 813 >gi|298528951|ref|ZP_07016354.1| ATP-dependent protease La [Desulfonatronospira thiodismutans ASO3-1] gi|298510387|gb|EFI34290.1| ATP-dependent protease La [Desulfonatronospira thiodismutans ASO3-1] Length = 815 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 59/188 (31%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+LA+ VAR F R + G V +A G + L Sbjct: 361 LCLVGPPGVGKTSLAKSVARATQREFIRLSLGGVRDEAEIRGHRRTYVGAMPGKILQSLK 420 Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ + +F +DE+ ++S+ E+L P A D LDL Sbjct: 421 RVDTNNPVFCLDEVDKMSMDFRGDPSAALLEVLDPEQNSAFSDHYLDL-----------D 469 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGI--------------------PIRLNFYEIEDL 188 +LS I + + PLQDR I P +LN++ +ED Sbjct: 470 YDLSNIFFITTANYLQAIPAPLQDRMEIIKLPGYLETEKNRIARHFIWPKQLNYHGLEDS 529 Query: 189 KTIVQRGA 196 K + GA Sbjct: 530 KVSISEGA 537 >gi|168334113|ref|ZP_02692326.1| ATP-dependent Zn protease [Epulopiscium sp. 'N.t. morphotype B'] Length = 670 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 202 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 232 >gi|115402109|ref|XP_001217131.1| ribosome biogenesis ATPase RIX7 [Aspergillus terreus NIH2624] gi|114188977|gb|EAU30677.1| ribosome biogenesis ATPase RIX7 [Aspergillus terreus NIH2624] Length = 514 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 21/104 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108 VL GPPG GKT +A A ELGV F S S P I +G+ AL + E+ + Sbjct: 147 VLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEAKRLAPCL 206 Query: 109 LFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGE 140 +FIDEI ++ IV ++L M+D LD G+ Sbjct: 207 IFIDEIDAITPKRESAQREMEKRIVAQLLT-CMDDLALDKTDGK 249 >gi|29841325|gb|AAP06357.1| similar to GenBank Accession Number BC003335 activator 1; 37 kDa subunit; replication factor C subunit)(RFC37)in Mus musculus [Schistosoma japonicum] Length = 364 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+T++E Q E S L+ I + L ++LF GPPG GKT+L +AR+L Sbjct: 32 RPKTIDEVAYQTEVVSVLRRCIGGSD-----LPNLLFYGPPGTGKTSLILALARQL 82 >gi|74203414|dbj|BAE20868.1| unnamed protein product [Mus musculus] Length = 953 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 33/208 (15%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70 +S E+ D++ + E+ G + + FI ++ R +L F GPPG+GKT++ Sbjct: 466 LSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 525 Query: 71 AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114 A+ +AR LG FR + G V A G + L + + L IDE+ Sbjct: 526 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 585 Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P LD + V ++LS+ I + + Sbjct: 586 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 638 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 639 PEPLRDRMEM-INVSGYVAQEKLAIAER 665 >gi|167038506|ref|YP_001666084.1| microtubule-severing ATPase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038751|ref|YP_001661736.1| microtubule-severing ATPase [Thermoanaerobacter sp. X514] gi|256751376|ref|ZP_05492255.1| Microtubule-severing ATPase [Thermoanaerobacter ethanolicus CCSD1] gi|300913664|ref|ZP_07130981.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X561] gi|307723321|ref|YP_003903072.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X513] gi|320116902|ref|YP_004187061.1| Vesicle-fusing ATPase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166852991|gb|ABY91400.1| Microtubule-severing ATPase [Thermoanaerobacter sp. X514] gi|166857340|gb|ABY95748.1| Microtubule-severing ATPase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749758|gb|EEU62783.1| Microtubule-severing ATPase [Thermoanaerobacter ethanolicus CCSD1] gi|300890349|gb|EFK85494.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X561] gi|307580382|gb|ADN53781.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X513] gi|319929993|gb|ADV80678.1| Vesicle-fusing ATPase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 490 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 29/137 (21%) Query: 1 MMDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE-------AAKARA 51 +++ +GL+ S+N+ + +++IS E+ GQ A S LK ++ +K Sbjct: 40 IIENKGLIPGSKNIIKPESEISF------EDIGGQKTAISELKEALDFVINKEKLSKMGI 93 Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------ 103 + +L GPPG GKT LA+ A+ +F +TSG + AG A + NL Sbjct: 94 RPIKGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEMYAGVGAQRVRNLFETARN 153 Query: 104 ----EDRD--VLFIDEI 114 E+++ ++FIDEI Sbjct: 154 LARKENKNSAIIFIDEI 170 >gi|320547726|ref|ZP_08042011.1| cell division protein FtsH [Streptococcus equinus ATCC 9812] gi|320447801|gb|EFW88559.1| cell division protein FtsH [Streptococcus equinus ATCC 9812] Length = 657 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLED--RDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAGRAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|305663909|ref|YP_003860197.1| Adenylate kinase [Ignisphaera aggregans DSM 17230] gi|304378478|gb|ADM28317.1| Adenylate kinase [Ignisphaera aggregans DSM 17230] Length = 215 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV---IAKAGDLAALLTNLEDRDVLFIDE 113 ++F+GPPG+GK T A+++ ++ G+ ST IAK +L + +R +L DE Sbjct: 3 IVFIGPPGIGKGTYAKILNQKYGIPHISTGDIFREEIAKGSELGQKVKYYVERGLLVPDE 62 Query: 114 I------HRLS 118 I HRLS Sbjct: 63 IVIEVIKHRLS 73 >gi|296421403|ref|XP_002840254.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636469|emb|CAZ84445.1| unnamed protein product [Tuber melanosporum] Length = 372 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L + + Q S LK ++++ L H+LF GPPG GKT+ +A+EL Sbjct: 41 RPKNLNDVSAQDHTISVLKRTLQSSN-----LPHMLFYGPPGTGKTSTVLALAKEL 91 >gi|269836808|ref|YP_003319036.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM 20745] gi|310943090|sp|D1C1U7|FTSH1_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|269786071|gb|ACZ38214.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM 20745] Length = 653 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT L++ VA E GV F S SG + G A+ + +L D+ + Sbjct: 199 VLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCI 258 Query: 109 LFIDEI 114 +FIDEI Sbjct: 259 VFIDEI 264 >gi|221116027|ref|XP_002154784.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 322 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N D + RP L++ + ++ FI K L H+LF GPPG GKT+ Sbjct: 116 NFHASDGWVEKYRPACLDDLISHKDIIDTIQKFISEGK-----LPHLLFYGPPGTGKTST 170 Query: 71 AQVVAREL 78 VA++L Sbjct: 171 ILAVAKQL 178 >gi|186470797|ref|YP_001862115.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815] gi|310943122|sp|B2JVU2|FTSH_BURP8 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|184197106|gb|ACC75069.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815] Length = 645 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 195 VLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRDLFEQARKHAPAI 254 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 255 VFIDELDSL 263 >gi|328793565|ref|XP_392703.4| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog isoform 1 [Apis mellifera] Length = 734 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG GKT LA+ VA E GV F +GP Sbjct: 317 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGP 348 >gi|326935328|ref|XP_003213725.1| PREDICTED: cell cycle checkpoint protein RAD17-like, partial [Meleagris gallopavo] Length = 673 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQ------VEACSNLKVFIEAAKARAEALDHVLFVGPP 63 RN SQ++ + +P T + Q VE + +F K L L GP Sbjct: 74 RNQSQDEPWVDKYKPETQNDLAVQKKKIEEVETWLKMHIFRRQPKQGGCVL---LLTGPA 130 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPV 89 G GKT Q++AR+LGV + + P+ Sbjct: 131 GCGKTATVQILARDLGVQVQEWTNPI 156 >gi|302770164|ref|XP_002968501.1| hypothetical protein SELMODRAFT_89456 [Selaginella moellendorffii] gi|300164145|gb|EFJ30755.1| hypothetical protein SELMODRAFT_89456 [Selaginella moellendorffii] Length = 611 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 92/228 (40%), Gaps = 43/228 (18%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR--- 106 E + +L GPPG GK+ LA+ +A E V F S P V +G+ A L L Sbjct: 39 EHMKALLLHGPPGCGKSLLAEAIANEASVPFFKVSAPEVVSGTSGESEAKLRTLFSEAFR 98 Query: 107 ---DVLFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 ++FIDE+ + IV +++ M++ E S K L Sbjct: 99 VAPAIIFIDEVDAICSKRESAQREMERRIVTQLMV-CMDEIDYAPRGSESEGGDSNK--L 155 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 R +IAAT R L L+ RF I L ++ D K +Q LT LA E Sbjct: 156 RRLLVIAATNRPEALDQALRRRFDREICL---KVPDEKARLQ---ILTVLASKLRLDGEF 209 Query: 212 AMR--SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 + +R TP G A K +T+E AA+ R+A + Sbjct: 210 DFKAIARRTPGFVG------------ADLKVLTKEAGVAAIRRIAAKR 245 >gi|284049192|ref|YP_003399531.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM 20731] gi|283953413|gb|ADB48216.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM 20731] Length = 635 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 15/123 (12%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLF 59 ++S S I+ +T ++ GQ EA L+ + AR +A+ VL Sbjct: 146 MMSFGKSNAKVYIAAQTGKTFKDVAGQDEAKEALQEIVNYLHNPARYKAIGAVMPKGVLL 205 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFI 111 VGPPG GKT LA+ VA E V F S SG V A + L +++ ++FI Sbjct: 206 VGPPGTGKTLLAKAVAGEAKVPFFSISGSEFIEMFVGMGAARVRDLFKQAQEKAPCIVFI 265 Query: 112 DEI 114 DEI Sbjct: 266 DEI 268 >gi|313125585|ref|YP_004035849.1| ATPase AAA [Halogeometricum borinquense DSM 11551] gi|312291950|gb|ADQ66410.1| AAA family ATPase, CDC48 subfamily [Halogeometricum borinquense DSM 11551] Length = 741 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K G+ L + E + Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSI 285 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 286 IFIDELDSIAPKREDV 301 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E NF S GP Sbjct: 499 VLLYGPPGTGKTLIAKAVANETNANFISVRGP 530 >gi|198276173|ref|ZP_03208704.1| hypothetical protein BACPLE_02362 [Bacteroides plebeius DSM 17135] gi|198270985|gb|EDY95255.1| hypothetical protein BACPLE_02362 [Bacteroides plebeius DSM 17135] Length = 393 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 30/145 (20%) Query: 4 REGLLSRNVSQEDADISLL-RPRTLEEF-----TGQVEACSNLKVFIEAAKAR----AEA 53 +E + + Q D ++S L +P+ ++EF GQ +A L V + R + Sbjct: 25 KEAMHHQGQGQTDLNLSELPKPKDIKEFLDQYVIGQDDAKRYLAVAVYNHYKRLLQPKDK 84 Query: 54 LD------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT-- 101 D +++ VG G GKT LA+ +A+ L V F V+ +AG D+ ++LT Sbjct: 85 NDVEIEKSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRL 144 Query: 102 ------NLE--DRDVLFIDEIHRLS 118 N+E +R ++FIDEI +++ Sbjct: 145 LQVADYNVEEAERGIVFIDEIDKIA 169 >gi|66934628|gb|AAY58903.1| putative LON protease [Hyaloperonospora parasitica] Length = 725 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 58/266 (21%), Positives = 115/266 (43%), Gaps = 42/266 (15%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 ++E+ D++ + E+ G ++ + F+ +K + + ++ FVGPPG+GKT++ Sbjct: 414 TEENFDLAKAKQILNEDHYGLMDIKERVLEFVAVSKLKGDVQGKIICFVGPPGVGKTSIG 473 Query: 72 QVVARELGVN-FRSTSG--------------PVIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G V A G + L + + + ++ IDEI Sbjct: 474 KSIARSLNREFFRFSVGGLSDVAEIKGHRRTYVGAMPGKIIQCLKSTQSSNPLILIDEID 533 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 +L + + E+L P+ +D + V ++LSR I + Sbjct: 534 KLGRGYQGDPASALLELLDPSQNSGFVDHYM-------DVPVDLSRVLFICTANVTDTIP 586 Query: 168 NPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 PL DR + +RL+ Y+ + + +V R + TGL ++ + + + Sbjct: 587 APLLDRMEV-LRLSGYDSPEKLAIAKEYLVPRAREKTGLEKSETTPESLGLTDDAIMALV 645 Query: 223 GRLLRR--VRDFAEVAHAKTITREIA 246 + R VR+ + H + I R++A Sbjct: 646 KQYCRESGVRNLEK--HVEKIFRKVA 669 >gi|89901195|ref|YP_523666.1| ATP-dependent metalloprotease FtsH [Rhodoferax ferrireducens T118] gi|89345932|gb|ABD70135.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Rhodoferax ferrireducens T118] Length = 616 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 192 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARAMAPAI 251 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 252 IFIDELDAL 260 >gi|320352510|ref|YP_004193849.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus DSM 2032] gi|320121012|gb|ADW16558.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus DSM 2032] Length = 605 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARKSAPAI 253 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 254 IFIDELDAL 262 >gi|297569271|ref|YP_003690615.1| ATP-dependent protease La [Desulfurivibrio alkaliphilus AHT2] gi|296925186|gb|ADH85996.1| ATP-dependent protease La [Desulfurivibrio alkaliphilus AHT2] Length = 809 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 45/169 (26%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98 + VGPPG+GKT++ + VAR + F R+ G + K L A Sbjct: 352 LCLVGPPGVGKTSICKSVARSMERRFQRLSLGGVRDEAEIRGHRRTYIGAMPGKI--LRA 409 Query: 99 LLTNLEDRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARS 146 + VL +DE+ ++S+ + E+L P + D LDL Sbjct: 410 MQKAKVANPVLCLDEVDKMSMDFRGDPAAALLEVLDPEQNHSFSDHYLDL---------- 459 Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 + +LS I + + PLQDR I IR+N Y ED K + RG Sbjct: 460 -EYDLSDVFFITTANNLAAIPAPLQDRMEI-IRINGYTEED-KVNIARG 505 >gi|124806673|ref|XP_001350791.1| cell division protein FtsH, putative [Plasmodium falciparum 3D7] gi|23496919|gb|AAN36471.1|AE014850_36 cell division protein FtsH, putative [Plasmodium falciparum 3D7] Length = 880 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG GKT LA+ VA E V + TSGP Sbjct: 185 VLLVGPPGSGKTMLARAVATEANVPYIYTSGP 216 >gi|68074487|ref|XP_679159.1| cell division protein FtsH [Plasmodium berghei strain ANKA] gi|56499835|emb|CAI04925.1| cell division protein FtsH, putative [Plasmodium berghei] Length = 849 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG GKT LA+ VA E V + TSGP Sbjct: 188 VLLVGPPGSGKTMLARAVATEANVPYIYTSGP 219 >gi|82594547|ref|XP_725471.1| cell division protein FtsH [Plasmodium yoelii yoelii str. 17XNL] gi|23480490|gb|EAA17036.1| cell division protein ftsh homolog [Plasmodium yoelii yoelii] Length = 867 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG GKT LA+ VA E V + TSGP Sbjct: 200 VLLVGPPGSGKTMLARAVATEANVPYIYTSGP 231 >gi|226479998|emb|CAX73295.1| hypothetical protein [Schistosoma japonicum] Length = 364 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+T++E Q E S L+ I + L ++LF GPPG GKT+L +AR+L Sbjct: 32 RPKTIDEVAYQTEVVSVLRRCIGGSD-----LPNLLFYGPPGTGKTSLILALARQL 82 >gi|240274120|gb|EER37638.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H143] Length = 751 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N ++ A+ A VL GPPG GKT LA+ VA Sbjct: 490 ADIGALSGVRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 546 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 547 ESRANFISVKGP 558 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT +A A ELGV F + S P I +G+ L D + Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCL 273 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 274 IFIDEIDAIT 283 >gi|260949387|ref|XP_002618990.1| hypothetical protein CLUG_00149 [Clavispora lusitaniae ATCC 42720] gi|238846562|gb|EEQ36026.1| hypothetical protein CLUG_00149 [Clavispora lusitaniae ATCC 42720] Length = 1164 Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 851 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 882 >gi|222480132|ref|YP_002566369.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC 49239] gi|222453034|gb|ACM57299.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC 49239] Length = 740 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 + ++ G EA ++ +E + E D VL GPPG GKT +A+ VA E Sbjct: 460 SWDDVGGLSEAQQQVQESVEWPLSSPEKFDRMGVDPPKGVLLYGPPGTGKTLMAKAVANE 519 Query: 78 LGVNFRSTSGP 88 NF S GP Sbjct: 520 TNANFISVRGP 530 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K G+ L + E + Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSI 285 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 286 IFIDELDSIAPKREDV 301 >gi|149247677|ref|XP_001528247.1| peroxisomal biogenesis factor 6 [Lodderomyces elongisporus NRRL YB-4239] gi|146448201|gb|EDK42589.1| peroxisomal biogenesis factor 6 [Lodderomyces elongisporus NRRL YB-4239] Length = 1242 Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 883 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 914 >gi|70606628|ref|YP_255498.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639] gi|68567276|gb|AAY80205.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639] Length = 747 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 491 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 524 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DV 108 +L GPPG GKT LA+ +A E+G F + +GP I G+ + + E+ + Sbjct: 216 ILLYGPPGTGKTLLARALANEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEENAPSI 275 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ E++ Sbjct: 276 IFIDEIDAIAPKREDV 291 >gi|55378303|ref|YP_136153.1| cell division control protein 48 [Haloarcula marismortui ATCC 43049] gi|55231028|gb|AAV46447.1| cell division control protein 48 [Haloarcula marismortui ATCC 43049] Length = 741 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K G+ L + E + Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEESPSI 285 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 286 IFIDELDSIAPKREDV 301 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E NF S GP Sbjct: 499 VLLYGPPGTGKTLMAKAVANETDANFISVRGP 530 >gi|332800065|ref|YP_004461564.1| ATP-dependent metalloprotease FtsH [Tepidanaerobacter sp. Re1] gi|332697800|gb|AEE92257.1| ATP-dependent metalloprotease FtsH [Tepidanaerobacter sp. Re1] Length = 599 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFEQAKKNSPCI 252 Query: 109 LFIDEI 114 +FIDEI Sbjct: 253 VFIDEI 258 >gi|322372274|ref|ZP_08046815.1| cell division control protein 48 [Haladaptatus paucihalophilus DX253] gi|320548283|gb|EFW89956.1| cell division control protein 48 [Haladaptatus paucihalophilus DX253] Length = 740 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K G+ L + E + Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAAEESPSI 285 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 286 IFIDELDSIAPKREDV 301 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 + ++ G +A S +K +E + E + VL GPPG GKT +A+ VA E Sbjct: 460 SWDDVGGLEDAKSQVKESVEWPLSSPEKFERMGIEPPSGVLLYGPPGTGKTLMAKAVANE 519 Query: 78 LGVNFRSTSGP 88 NF S GP Sbjct: 520 TNANFISVRGP 530 >gi|319411987|emb|CBQ74030.1| related to AFG2-ATPase of the CDC48/PAS1/SEC18 (AAA) family [Sporisorium reilianum] Length = 862 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108 VL GPPG GKT+LA+ VA G ++ + +GP ++ A G+ + L N+ + + Sbjct: 284 VLLYGPPGTGKTSLARAVAAATGSSYLTINGPELSSAFHGETESKLRNIFREARRKSPCI 343 Query: 109 LFIDEIHRLS 118 + IDEI L+ Sbjct: 344 IIIDEIDALA 353 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 635 VLLYGPPGCSKTLIARALATESGLNFLAVKGP 666 >gi|310831096|ref|YP_003969739.1| putative AAA+ superfamily ATPase [Cafeteria roenbergensis virus BV-PW1] gi|309386280|gb|ADO67140.1| putative AAA+ superfamily ATPase [Cafeteria roenbergensis virus BV-PW1] Length = 469 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 14/77 (18%) Query: 54 LDHVLFVGPPGLGKTTLAQVVARELGVN--FRSTSGPVIAKAGDL-AALL-------TNL 103 L+H++ +GPPG GKT+++ ++ E+ N F S + AK DL AA L N+ Sbjct: 225 LNHIVIMGPPGTGKTSVSHIIG-EIYYNLGFLSKGTFIKAKRSDLIAAYLGQTAIKTQNM 283 Query: 104 EDR---DVLFIDEIHRL 117 D+ +LFIDE++ L Sbjct: 284 IDKAEGGILFIDEVYSL 300 >gi|307214991|gb|EFN89836.1| Protein YME1-like protein [Harpegnathos saltator] Length = 776 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG GKT LA+ VA E GV F +GP Sbjct: 359 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGP 390 >gi|302820532|ref|XP_002991933.1| hypothetical protein SELMODRAFT_513 [Selaginella moellendorffii] gi|300140319|gb|EFJ07044.1| hypothetical protein SELMODRAFT_513 [Selaginella moellendorffii] Length = 823 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 V+ GPPG GKT LA+ VA E +NF S GP + Sbjct: 577 VMLYGPPGTGKTLLAKAVATECSLNFLSVKGPEV 610 >gi|229578059|ref|YP_002836457.1| TIP49 domain protein [Sulfolobus islandicus Y.G.57.14] gi|228008773|gb|ACP44535.1| TIP49 domain protein [Sulfolobus islandicus Y.G.57.14] Length = 452 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 27/50 (54%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ EA V ++ + +LFVGPPG GKT LA +ARELG Sbjct: 39 LVGQAEAREAAGVVVQLINQGKMSGKGILFVGPPGTGKTALAVAIARELG 88 >gi|260830569|ref|XP_002610233.1| hypothetical protein BRAFLDRAFT_130765 [Branchiostoma floridae] gi|229295597|gb|EEN66243.1| hypothetical protein BRAFLDRAFT_130765 [Branchiostoma floridae] Length = 1853 Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 754 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 785 Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 1603 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 1634 >gi|167038463|ref|YP_001666041.1| PTS system transcriptional activator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116857|ref|YP_004187016.1| sigma-54 factor interaction domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857297|gb|ABY95705.1| PTS system transcriptional activator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929948|gb|ADV80633.1| sigma-54 factor interaction domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 979 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 40/184 (21%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARA----EALDHVLFVGPPGL 65 +NV +++ D + F + + +LKV I AKA L H L VGP G Sbjct: 112 QNVEKQNVDKDHNSNKDTLSFKDIIGSEGSLKVQISLAKAAVLYPPHGL-HTLIVGPSGA 170 Query: 66 GKTTLAQVV---ARELGVNFRSTSGPVIAKAGDLA------------------------- 97 GK+ LA+ + A E G F + V+ D A Sbjct: 171 GKSQLAEAMYSFAIESG-RFSKNAPFVVFNCADYADNPQLLMSQLFGYVKGAFTGADVPK 229 Query: 98 ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157 A L D +LF+DE+HRL +EIL+ ++ + + GE S R +I LI Sbjct: 230 AGLVEKADGGILFLDEVHRLPSEGQEILFSILDKGKFRRL-GETESTREAQI-----MLI 283 Query: 158 AATT 161 AATT Sbjct: 284 AATT 287 >gi|134287770|ref|YP_001109936.1| FtsH-2 peptidase [Burkholderia vietnamiensis G4] gi|134132420|gb|ABO60155.1| membrane protease FtsH catalytic subunit [Burkholderia vietnamiensis G4] Length = 633 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 200 VLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRDLFEQARQHAPAI 259 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 260 VFIDELDSL 268 >gi|326501604|dbj|BAK02591.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 986 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ +A E G NF S +G + A L L + R + Sbjct: 733 VLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRLAPVI 792 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 793 IFVDEVDSL 801 >gi|311032289|ref|ZP_07710379.1| cell division protease FtsH [Bacillus sp. m3-13] Length = 327 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 40 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 99 Query: 109 LFIDEI 114 +FIDEI Sbjct: 100 IFIDEI 105 >gi|284043135|ref|YP_003393475.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684] gi|310943084|sp|D3F124|FTSH1_CONWI RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|283947356|gb|ADB50100.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684] Length = 653 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+E K + +AL VL GPPG GKT LA+ VA E GV F S SG Sbjct: 167 VEELHEIKEFLENPK-KFQALGARIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 224 >gi|255521742|ref|ZP_05388979.1| cell division protein ftsH [Listeria monocytogenes FSL J1-175] Length = 400 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|242065978|ref|XP_002454278.1| hypothetical protein SORBIDRAFT_04g027890 [Sorghum bicolor] gi|241934109|gb|EES07254.1| hypothetical protein SORBIDRAFT_04g027890 [Sorghum bicolor] Length = 973 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ +A E G NF S +G + A L L + R + Sbjct: 720 VLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRLAPVI 779 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 780 IFVDEVDSL 788 >gi|225557765|gb|EEH06050.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus G186AR] Length = 751 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N ++ A+ A VL GPPG GKT LA+ VA Sbjct: 490 ADIGALSGVRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 546 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 547 ESRANFISVKGP 558 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT +A A ELGV F + S P I +G+ L D + Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCL 273 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 274 IFIDEIDAIT 283 >gi|158285610|ref|XP_308395.4| AGAP007477-PA [Anopheles gambiae str. PEST] gi|157020075|gb|EAA04621.4| AGAP007477-PA [Anopheles gambiae str. PEST] Length = 341 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-E 77 I RP+ EE G E + L +F A +++ GPPG+GKTT +AR Sbjct: 28 IEKYRPQRFEEIVGNEETVARLGIFASQGNA-----PNIIIAGPPGVGKTTTILCLARIL 82 Query: 78 LGVNFR 83 LG NFR Sbjct: 83 LGPNFR 88 >gi|161528731|ref|YP_001582557.1| ATPase AAA [Nitrosopumilus maritimus SCM1] gi|160340032|gb|ABX13119.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1] Length = 721 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 19/138 (13%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEA--------AKARAEA 53 +DR L N+S E A +R T EE G E ++ +E ++ E Sbjct: 156 IDRSTTL--NISTETAVDRKVR-VTYEEVGGLGEKVKAMREIVELPLRHPELFSRLGIEP 212 Query: 54 LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD-- 107 +L GPPG GKT LA+V+A E N +GP I G+ A L ++ E +D Sbjct: 213 HSGILLYGPPGCGKTLLAKVMASESEANMFPINGPEIMNKYYGETEAKLRDIFKEAKDNS 272 Query: 108 --VLFIDEIHRLSIIVEE 123 ++FIDEI ++ EE Sbjct: 273 PSIIFIDEIDAIAPKREE 290 >gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis] Length = 352 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR L++ Q A + LK ++ A L H+LF GPPG GKT+ + +EL Sbjct: 29 RPRKLDDVAAQDHAVTVLKRTLQTAN-----LPHMLFYGPPGTGKTSTILALTKEL 79 >gi|70952929|ref|XP_745599.1| ATPase [Plasmodium chabaudi chabaudi] gi|56525973|emb|CAH74260.1| ATPase, putative [Plasmodium chabaudi chabaudi] Length = 845 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ ++ E+ NF + GP I Sbjct: 461 ILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEI 494 >gi|328954667|ref|YP_004372000.1| membrane protease FtsH catalytic subunit [Coriobacterium glomerans PW2] gi|328454991|gb|AEB06185.1| membrane protease FtsH catalytic subunit [Coriobacterium glomerans PW2] Length = 736 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL VGPPG GKT LA+ VA E GV F S SG + G A+ + +L + + Sbjct: 273 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKEAKAQSPSI 332 Query: 109 LFIDEI 114 +FIDEI Sbjct: 333 VFIDEI 338 >gi|328953484|ref|YP_004370818.1| AAA family ATPase, CDC48 subfamily [Desulfobacca acetoxidans DSM 11109] gi|328453808|gb|AEB09637.1| AAA family ATPase, CDC48 subfamily [Desulfobacca acetoxidans DSM 11109] Length = 715 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR--- 106 +A VL GPPG GKT +A+ +A E NF S SGP + G+ A L + + Sbjct: 215 DAPKGVLLHGPPGCGKTLIARTIAHETEANFFSVSGPEVVHKFYGESEAHLRKIFEEASR 274 Query: 107 ---DVLFIDEI 114 ++F+DEI Sbjct: 275 KGPSIIFMDEI 285 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ +A E VNF S GP + Sbjct: 493 ILLTGPPGCGKTLLAKAIATESRVNFLSVKGPAL 526 >gi|325096741|gb|EGC50051.1| activator 1 subunit 3 [Ajellomyces capsulatus H88] Length = 443 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TLE+ +G + S + FI+ + L H+L GPPG GKT+ +AR + Sbjct: 52 RPNTLEDVSGHHDIISTINRFIDKNR-----LPHLLLYGPPGTGKTSTILALARRI 102 >gi|303240182|ref|ZP_07326702.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2] gi|302592273|gb|EFL62001.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2] Length = 604 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE K F+E A VL VGPPG GKT LA+ V+ E GV F + SG Sbjct: 172 EELKEIVEFLKQPKKFVELG---ARIPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFTISG 228 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G A+ + +L D+ ++FIDEI Sbjct: 229 SDFVEMFVGVGASRVRDLFDQAKKNSPCIVFIDEI 263 >gi|290997828|ref|XP_002681483.1| aaa ATPase family protein [Naegleria gruberi] gi|284095107|gb|EFC48739.1| aaa ATPase family protein [Naegleria gruberi] Length = 948 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVL 109 L VGPPG GKT LA+ VA E GV F S SG V + L +D ++ Sbjct: 503 LLVGPPGTGKTLLAKAVAGEAGVPFYSISGSEFVEMVVGVGPARVRKLFKEAKDNAPSII 562 Query: 110 FIDEI 114 FIDEI Sbjct: 563 FIDEI 567 >gi|225573964|ref|ZP_03782609.1| hypothetical protein RUMHYD_02058 [Blautia hydrogenotrophica DSM 10507] gi|225038781|gb|EEG49027.1| hypothetical protein RUMHYD_02058 [Blautia hydrogenotrophica DSM 10507] Length = 595 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 184 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 214 >gi|160945108|ref|ZP_02092334.1| hypothetical protein FAEPRAM212_02627 [Faecalibacterium prausnitzii M21/2] gi|158442839|gb|EDP19844.1| hypothetical protein FAEPRAM212_02627 [Faecalibacterium prausnitzii M21/2] gi|295105644|emb|CBL03188.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Faecalibacterium prausnitzii SL3/3] Length = 440 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 28/131 (21%) Query: 16 DADISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEA---------LDHVLFVG 61 D DI+++ P ++E GQ EA L V + R + +VL +G Sbjct: 76 DLDINIMTPAEIKEGLDQYVIGQDEAKRVLSVSVYNHYKRILSGKGGDVELQKSNVLLLG 135 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV------ 108 P G+GKT LAQ +A+ LGV F + +AG + + N+ D DV Sbjct: 136 PSGVGKTLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADFDVQKAQIG 195 Query: 109 -LFIDEIHRLS 118 ++IDEI +++ Sbjct: 196 IIYIDEIDKIT 206 >gi|84490197|ref|YP_448429.1| putative 26S protease, regulatory subunit [Methanosphaera stadtmanae DSM 3091] gi|84373516|gb|ABC57786.1| putative 26S protease, regulatory subunit [Methanosphaera stadtmanae DSM 3091] Length = 370 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 34/242 (14%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKV---FIEAA-KARAEALDH 56 M ++ + + +S+ + +S + GQ +A + K+ ++E K + A + Sbjct: 105 MFKQDSKIKQTLSKHEYKVS--------DVVGQTKAKNKAKIITNYLENPDKFKNWAPRN 156 Query: 57 VLFVGPPGLGKTTLAQVVARELGV--NFRSTSGPVIAKAGDLAALLTNLEDR------DV 108 +LF G PG GKT LAQ +A EL V + + + GD A + L + V Sbjct: 157 ILFYGRPGTGKTMLAQALANELNVPIHMIKATSLIGNHVGDGANQIHELYKQARYTKPTV 216 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 +FIDEI +++ E Y ++ +++ ++ N S T I AT +L Sbjct: 217 IFIDEIDAIAL---ERKYQSLRGDVTEIVNALLTEMDGIEDNDSIIT-ICATNNPEILDY 272 Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT---DEAACEIAMRSRGTPRIAGRL 225 ++ RF I E+ + I+++ K L + D+ CE T ++GR Sbjct: 273 AIRSRFEEEIEFTLPNDEERRIILEKNIKTLPLKCSFNLDKLVCE-------TKNLSGRD 325 Query: 226 LR 227 ++ Sbjct: 326 MK 327 >gi|121603307|ref|YP_980636.1| ATP-dependent metalloprotease FtsH [Polaromonas naphthalenivorans CJ2] gi|120592276|gb|ABM35715.1| membrane protease FtsH catalytic subunit [Polaromonas naphthalenivorans CJ2] Length = 618 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 8/91 (8%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92 E LK E + A VL VGPPG GKT LA+ VA E GV F S SG + Sbjct: 176 EVVDFLKHPQEYGRLGAHIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMF 235 Query: 93 AGDLAALLTNLEDR------DVLFIDEIHRL 117 G AA + +L ++ ++FIDE+ L Sbjct: 236 VGVGAARVRDLFEQARGMAPAIIFIDELDAL 266 >gi|307194746|gb|EFN76980.1| Katanin p60 ATPase-containing subunit A-like 2 [Harpegnathos saltator] Length = 501 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAA---LLTNLEDR- 106 A VL GPPG GKT LA+ VA E F + TS VI+K GD +LT+L Sbjct: 255 ACKGVLLYGPPGTGKTMLAKAVATECQSTFFNITSSSVISKWRGDSEKYIRVLTDLAKHY 314 Query: 107 --DVLFIDEI 114 ++FIDEI Sbjct: 315 APTIIFIDEI 324 >gi|301612800|ref|XP_002935905.1| PREDICTED: chromosome transmission fidelity protein 18 homolog [Xenopus (Silurana) tropicalis] Length = 982 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 10/68 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAK-----AGDLAALLTNLEDR 106 L GPPGLGKTTLA V+AR G N + P I K A + ++L E Sbjct: 373 ALLCGPPGLGKTTLAHVIARHAGYNVVEMNASDDRSPEIFKTRIEAATQMKSVLGVDERP 432 Query: 107 DVLFIDEI 114 + L IDEI Sbjct: 433 NCLIIDEI 440 >gi|299536710|ref|ZP_07050020.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis ZC1] gi|298727824|gb|EFI68389.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis ZC1] Length = 675 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 201 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|292656507|ref|YP_003536404.1| cell division control protein 48 [Haloferax volcanii DS2] gi|291371302|gb|ADE03529.1| cell division control protein 48 [Haloferax volcanii DS2] Length = 743 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 17/148 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K G+ L + E + Sbjct: 226 VLLHGPPGTGKTLLARAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSI 285 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLLT 167 +FIDE+ ++ E++ L+ + +G AR + +IAAT RV + Sbjct: 286 IFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEAR------GQVIVIAATNRVDSVD 339 Query: 168 NPLQ--DRFGIPIRLNFYEIEDLKTIVQ 193 L+ RF I + + E K I+Q Sbjct: 340 PALRRPGRFDREIEIGVPDEEGRKEILQ 367 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 EA VL GPPG GKT +A+ VA E NF S GP Sbjct: 494 EAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGP 530 >gi|269792568|ref|YP_003317472.1| ATPase associated with various cellular activities AAA_5 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100203|gb|ACZ19190.1| ATPase associated with various cellular activities AAA_5 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 651 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 28/114 (24%) Query: 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN---- 81 L EFT + ++K FI A K H++ GPPG GKTTLA+ +E + +N Sbjct: 331 LNEFTLPAKPIISVKNFINANK-------HIIMTGPPGTGKTTLAERFCQEAVRINYISG 383 Query: 82 ------------FRSTSGPVIAKAGDLA----ALLTNLEDRDVLFIDEIHRLSI 119 F + G + K G L+ L ++ + L IDEI+R + Sbjct: 384 YMMTTAIADWSTFDTIGGYMPDKNGSLSFVEGVFLKSIRENKWLIIDEINRAEV 437 >gi|255324356|ref|ZP_05365475.1| DNA polymerase III subunit gamma/tau [Corynebacterium tuberculostearicum SK141] gi|255298575|gb|EET77873.1| DNA polymerase III subunit gamma/tau [Corynebacterium tuberculostearicum SK141] Length = 791 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + + L ++A + ++H LF GP G GKT+ A+++AR L Sbjct: 8 RPATFAEVVGQEQVTTPLSAALDAGR-----INHAYLFSGPRGCGKTSSARIMARSLNCE 62 Query: 82 FRSTSGPV 89 TS P Sbjct: 63 HGPTSTPC 70 >gi|258404646|ref|YP_003197388.1| ATP-dependent protease La [Desulfohalobium retbaense DSM 5692] gi|257796873|gb|ACV67810.1| ATP-dependent protease La [Desulfohalobium retbaense DSM 5692] Length = 815 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 50/196 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L++ +AR G F R + G V +A G + L Sbjct: 361 LCFVGPPGVGKTSLSKSIARSTGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 420 Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 + + +F +DE+ ++S+ + E+L P A D LDL Sbjct: 421 RAQSNNPVFCLDEVDKMSMDFRGDPSAALLEVLDPEQNVAFNDHYLDL-----------D 469 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198 +LS I + + PL+DR I I+L+ Y E E L K + + G Sbjct: 470 YDLSHIFFITTANYLEAIPAPLRDRMEI-IKLSGYLETEKLQIARKFLLPKQLHKNGLDP 528 Query: 199 TGLAVTDEAACEIAMR 214 ++V+D A E+ R Sbjct: 529 EQVSVSDGALLEVIRR 544 >gi|254457852|ref|ZP_05071279.1| atpase ec atp-dependent zn protease [Campylobacterales bacterium GD 1] gi|207085245|gb|EDZ62530.1| atpase ec atp-dependent zn protease [Campylobacterales bacterium GD 1] Length = 547 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 185 VLLVGPPGVGKTMIAKAVAHEAGVPFFYQSG 215 >gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis] gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis] Length = 329 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L++ + + ++ FI E L H+LF GPPG GKT+ VA++L Sbjct: 18 RPKCLDDLISHTDIINTIQRFINE-----ERLPHLLFYGPPGTGKTSTILAVAKQL 68 >gi|126180341|ref|YP_001048306.1| ATPase [Methanoculleus marisnigri JR1] gi|125863135|gb|ABN58324.1| ATPase associated with various cellular activities, AAA_3 [Methanoculleus marisnigri JR1] Length = 324 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 12/93 (12%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------- 106 H+L G PG KTT+ ++VAR + FR G V + D+ + +R Sbjct: 47 HLLIEGVPGTAKTTICKIVARLIDYEFRRVQGAVDIQPADIIGVRVYDRNRSEFVLQRGP 106 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 + L +DE++RL+ + L AM + Q+ + Sbjct: 107 IFTNFLMVDEMNRLTPKTQSALLEAMSERQVTI 139 >gi|70948653|ref|XP_743809.1| cell division protein FtsH [Plasmodium chabaudi chabaudi] gi|56523487|emb|CAH79007.1| cell division protein FtsH, putative [Plasmodium chabaudi chabaudi] Length = 850 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG GKT LA+ VA E V + TSGP Sbjct: 188 VLLVGPPGSGKTMLARAVATEANVPYIYTSGP 219 >gi|50085313|ref|YP_046823.1| putative methanol dehydrogenase regulatory protein [Acinetobacter sp. ADP1] gi|49531289|emb|CAG69001.1| putative methanol dehydrogenase regulatory protein [Acinetobacter sp. ADP1] Length = 298 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 12/88 (13%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDR-------- 106 HVLF PGLGKTTLA ++R G+NF A D+ + + N +D Sbjct: 39 HVLFEDLPGLGKTTLASALSRLAGLNFGRIQFTNDMLASDVLGINMFNQKDHVFEFKRGP 98 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMED 131 +L DEI+R S + L AME+ Sbjct: 99 IFTQILLADEINRCSPKTQSALLEAMEE 126 >gi|89100506|ref|ZP_01173367.1| Cell division protein ftsH [Bacillus sp. NRRL B-14911] gi|89084772|gb|EAR63912.1| Cell division protein ftsH [Bacillus sp. NRRL B-14911] Length = 662 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|328707867|ref|XP_001946814.2| PREDICTED: peroxisome biogenesis protein 6-like [Acyrthosiphon pisum] Length = 810 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E NF S GP Sbjct: 583 ILLYGPPGTGKTLLAKAVATECKYNFLSIKGP 614 >gi|289449797|ref|YP_003475214.1| ATP-dependent metallopeptidase HflB [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184344|gb|ADC90769.1| ATP-dependent metallopeptidase HflB [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 673 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E GV F S SG V A + L ++ + Sbjct: 204 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFAEVKKHSPAI 263 Query: 109 LFIDEI 114 +FIDEI Sbjct: 264 IFIDEI 269 >gi|254579643|ref|XP_002495807.1| ZYRO0C03476p [Zygosaccharomyces rouxii] gi|238938698|emb|CAR26874.1| ZYRO0C03476p [Zygosaccharomyces rouxii] Length = 1028 Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F K R+ VLF GPPG GKT +A+ +A +NF S GP Sbjct: 753 QLFASGMKKRS----GVLFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 796 >gi|229827992|ref|ZP_04454061.1| hypothetical protein GCWU000342_00041 [Shuttleworthia satelles DSM 14600] gi|229792586|gb|EEP28700.1| hypothetical protein GCWU000342_00041 [Shuttleworthia satelles DSM 14600] Length = 672 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 23/137 (16%) Query: 1 MMDREG------LLSRNVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEA------ 46 MMDR G LS + + +A I + + ++ G+ EA NL+ +E Sbjct: 134 MMDRMGGALGGNSLSFGMGKSNAKIYVKSSDGIRFDDVAGEEEAKENLQEIVEYLHDPHK 193 Query: 47 -AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAAL 99 A+ +L VGPPG GKT LA+ VA E V F S SG + A + L Sbjct: 194 YTAIGAKMPKGILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDL 253 Query: 100 LTNLEDRD--VLFIDEI 114 +++ ++FIDEI Sbjct: 254 FRQAKEKAPCIVFIDEI 270 >gi|311741093|ref|ZP_07714918.1| DNA polymerase III, gamma/tau subunit DnaX [Corynebacterium pseudogenitalium ATCC 33035] gi|311303895|gb|EFQ79973.1| DNA polymerase III, gamma/tau subunit DnaX [Corynebacterium pseudogenitalium ATCC 33035] Length = 787 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + + L ++A + ++H LF GP G GKT+ A+++AR L Sbjct: 8 RPATFAEVVGQEQVTTPLSAALDAGR-----INHAYLFSGPRGCGKTSSARIMARSLNCE 62 Query: 82 FRSTSGPV 89 TS P Sbjct: 63 HGPTSTPC 70 >gi|146161282|ref|XP_977097.2| ATPase, AAA family protein [Tetrahymena thermophila] gi|146146796|gb|EAR86317.2| ATPase, AAA family protein [Tetrahymena thermophila SB210] Length = 440 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 15/106 (14%) Query: 27 LEEFTGQVEACSNLKV-------FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL- 78 ++ G V+A +LK F E K + +L GPPG GKT LA+ A E Sbjct: 139 WDDIAGLVKAKESLKEAVILPIRFPEIFKGARKPWKGILLYGPPGTGKTYLAKACATETE 198 Query: 79 GVNFRSTSGPVIAK-AGDLAALLTNL------EDRDVLFIDEIHRL 117 G F +S +++K G+ L+ NL + ++FIDE+ L Sbjct: 199 GTFFSVSSADLVSKYVGESEKLIKNLFALAREKKPSIIFIDEVDSL 244 >gi|85372702|gb|ABC70156.1| AAA-type ATPase [uncultured prokaryote 2E01B] Length = 725 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +AQ VA E+ F S SGP I Sbjct: 242 VLLHGPPGTGKTLIAQAVANEVDAEFISVSGPEI 275 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E VNF +GP Sbjct: 507 VLLHGPPGTGKTLLARAIAGESEVNFIQVAGP 538 >gi|66801075|ref|XP_629463.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4] gi|74996469|sp|Q54CS8|PEX6_DICDI RecName: Full=Peroxisomal biogenesis factor 6; AltName: Full=Peroxin-6 gi|60462869|gb|EAL61068.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4] Length = 1201 Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ +A E +NF S GP Sbjct: 955 ILLFGPPGTGKTLLAKAIATECSLNFLSVKGP 986 >gi|327279995|ref|XP_003224740.1| PREDICTED: katanin p60 ATPase-containing subunit A1-like isoform 1 [Anolis carolinensis] Length = 495 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 79/194 (40%), Gaps = 36/194 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E F + S + G+ L + Sbjct: 249 VLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTT 308 Query: 109 LFIDEIHRLSI---IVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVG 164 +FIDEI + EE + A + +L+V +G S + S+ ++ A T Sbjct: 309 IFIDEIDSICSRRGTSEE--HEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFP 366 Query: 165 L-----LTNPLQDRFGIP----------IRLNFYEIE-----DLKTIVQRGAKLTGLAVT 204 L L+ R IP +R+N E+E DL TI Q +G +T Sbjct: 367 WDIDEALRRRLEKRIYIPLPSAKGREELLRINLRELELAGDVDLATIAQNMDGYSGADIT 426 Query: 205 D--EAACEIAMRSR 216 + A +AMR R Sbjct: 427 NVCRDASLMAMRRR 440 >gi|322370336|ref|ZP_08044895.1| cell division control protein 48 [Haladaptatus paucihalophilus DX253] gi|320550044|gb|EFW91699.1| cell division control protein 48 [Haladaptatus paucihalophilus DX253] Length = 713 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/39 (53%), Positives = 24/39 (61%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 R E VL GPPG GKT LA+ +A E VNF S +GP Sbjct: 488 RTEPPSGVLLYGPPGTGKTLLARALAGESDVNFVSVAGP 526 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ +F S SGP + Sbjct: 229 VLLYGPPGTGKTLIAKAVANEVNAHFVSVSGPEV 262 >gi|222100874|ref|YP_002535442.1| DNA polymerase III, gamma and tau subunit [Thermotoga neapolitana DSM 4359] gi|221573264|gb|ACM24076.1| DNA polymerase III, gamma and tau subunit [Thermotoga neapolitana DSM 4359] Length = 473 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 94/237 (39%), Gaps = 43/237 (18%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T E Q ++K I A + +F GP G GKTTLA+++A+ L Sbjct: 9 RPKTFSEVVNQ----DHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCEN 64 Query: 83 RSTSGPV----IAKAGDLAALLTNLE-----DRDVLFIDEIHRLS--------------I 119 R P + D + +E +R IDEI R+ Sbjct: 65 REGVEPCNRCRSCREIDEGTFMDVIELDAASNRG---IDEIRRIRDAVGYRPMEGKYKVY 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 I++E+ E F L E P + V + ATT + + + R + Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVV--------FVLATTNLEKVPPTIISRCQV--- 170 Query: 180 LNFYEIED--LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 F I D ++ +Q A+ G+ + DEA IA R+ G R A +L +V F+E Sbjct: 171 FEFRNIPDELIEKRLQEVARAEGIDIDDEALRFIARRAAGGMRDALTMLEQVWKFSE 227 >gi|115762608|ref|XP_784872.2| PREDICTED: similar to GA19899-PA [Strongylocentrotus purpuratus] gi|115948961|ref|XP_001198560.1| PREDICTED: similar to GA19899-PA [Strongylocentrotus purpuratus] Length = 444 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 20/109 (18%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 E ++ S+LR + L + LK + +L GPPG GK+ LAQ V Sbjct: 206 EGSNPSMLRSKVLSHYLKDWFLIGGLKPW-----------KRILLYGPPGTGKSRLAQAV 254 Query: 75 ARELGVNFRSTSGP--VIAKAGDLAALLTNL-------EDRDVLFIDEI 114 ++E+ F S + + G+ ++ L E R V+FIDE+ Sbjct: 255 SKEINSTFYCVSSADLISSWVGESEKIIKELFHHATQQEGRSVVFIDEL 303 >gi|37522218|ref|NP_925595.1| cell division protein FtsH-like protein [Gloeobacter violaceus PCC 7421] gi|35213218|dbj|BAC90590.1| glr2649 [Gloeobacter violaceus PCC 7421] Length = 785 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 7/68 (10%) Query: 27 LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79 L E G EA ++ FI+ ++ A+ LFVGPPG GKT LA+ +A E G Sbjct: 335 LAEVIGCEEAKGEVQEFIDFLRSPDRYRRIGAKVPRGFLFVGPPGTGKTLLAKAIANEAG 394 Query: 80 VNFRSTSG 87 V F + SG Sbjct: 395 VPFYALSG 402 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 20/82 (24%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------- 103 AE VL VGPPG GKT +A+ +A E GV F S + A D A + + Sbjct: 105 AEPPRGVLLVGPPGTGKTMIARAIANEAGVPFYSLA------AADFANMFLGVGSQRIRQ 158 Query: 104 -------EDRDVLFIDEIHRLS 118 R ++FIDEI L+ Sbjct: 159 IYRTARRHPRAIVFIDEIEVLA 180 >gi|326202847|ref|ZP_08192714.1| ATP-dependent metalloprotease FtsH [Clostridium papyrosolvens DSM 2782] gi|325986924|gb|EGD47753.1| ATP-dependent metalloprotease FtsH [Clostridium papyrosolvens DSM 2782] Length = 619 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E G E L +E KA + ++ VL VGPPG GKT LA+ V+ E Sbjct: 162 TFENVAGADEEKEELAEIVEFLKAPKKFVELGARIPKGVLLVGPPGTGKTLLAKAVSGEA 221 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 222 GVPFFSISG 230 >gi|255609009|ref|XP_002538985.1| werner helicase interacting protein, putative [Ricinus communis] gi|223509400|gb|EEF23399.1| werner helicase interacting protein, putative [Ricinus communis] Length = 109 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP+TL+E GQ K A ++ L ++ GPPG+GKTTLA+++A+ Sbjct: 19 LRPKTLDEVVGQTHLLGESKPLRRAFESGK--LPSMILWGPPGVGKTTLARLIAQTADAE 76 Query: 82 F 82 F Sbjct: 77 F 77 >gi|254502137|ref|ZP_05114288.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii DFL-11] gi|222438208|gb|EEE44887.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii DFL-11] Length = 608 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 52/107 (48%), Gaps = 15/107 (14%) Query: 26 TLEEFTGQVEACSNLKV---FIEAAKARAEALDHV----LFVGPPGLGKTTLAQVVAREL 78 + E G EA LK F++ K+ HV L VGPPG GKT LA+ VA E Sbjct: 155 SFENVAGVDEAKRELKEIVDFLKDPKSYGRLGAHVPKGILLVGPPGTGKTLLARAVAGEA 214 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRL 117 GV F S SG + G AA + +L ++ ++FIDE+ L Sbjct: 215 GVPFFSISGSEFVEMFVGVGAARVRDLFEQARKAAPAIIFIDELDAL 261 >gi|153814159|ref|ZP_01966827.1| hypothetical protein RUMTOR_00368 [Ruminococcus torques ATCC 27756] gi|317499958|ref|ZP_07958194.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA] gi|331087819|ref|ZP_08336744.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 3_1_46FAA] gi|145848555|gb|EDK25473.1| hypothetical protein RUMTOR_00368 [Ruminococcus torques ATCC 27756] gi|316898675|gb|EFV20710.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA] gi|330409514|gb|EGG88955.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 3_1_46FAA] Length = 423 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 28/129 (21%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63 DI+LL P ++ F GQ EA L V + R A ++L +GP Sbjct: 60 DINLLTPEEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEQDLGVELQKSNILMLGPT 119 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109 G GKT LAQ +A+ L V F + +AG + + N+ + ++ Sbjct: 120 GCGKTLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEHGII 179 Query: 110 FIDEIHRLS 118 +IDEI +++ Sbjct: 180 YIDEIDKIT 188 >gi|30526336|gb|AAP32310.1| putative FtsH protease [Solanum lycopersicum] Length = 714 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L + R + Sbjct: 261 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 320 Query: 109 LFIDEI 114 +FIDEI Sbjct: 321 IFIDEI 326 >gi|15920392|ref|NP_376061.1| hypothetical protein ST0209 [Sulfolobus tokodaii str. 7] gi|15621174|dbj|BAB65170.1| 689aa long hypothetical SAV protein [Sulfolobus tokodaii str. 7] Length = 689 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 422 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 455 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108 +L GPPG+GKT LA+ VA E F S +GP I G+ L + ED + Sbjct: 149 ILLYGPPGVGKTLLAKAVANETEAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 208 Query: 109 LFIDEIHRLSIIVEEIL 125 +FIDEI ++ +E++ Sbjct: 209 IFIDEIDAIAPKRDEVI 225 >gi|327279997|ref|XP_003224741.1| PREDICTED: katanin p60 ATPase-containing subunit A1-like isoform 2 [Anolis carolinensis] Length = 487 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 79/194 (40%), Gaps = 36/194 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E F + S + G+ L + Sbjct: 241 VLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTT 300 Query: 109 LFIDEIHRLSI---IVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVG 164 +FIDEI + EE + A + +L+V +G S + S+ ++ A T Sbjct: 301 IFIDEIDSICSRRGTSEE--HEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFP 358 Query: 165 L-----LTNPLQDRFGIP----------IRLNFYEIE-----DLKTIVQRGAKLTGLAVT 204 L L+ R IP +R+N E+E DL TI Q +G +T Sbjct: 359 WDIDEALRRRLEKRIYIPLPSAKGREELLRINLRELELAGDVDLATIAQNMDGYSGADIT 418 Query: 205 D--EAACEIAMRSR 216 + A +AMR R Sbjct: 419 NVCRDASLMAMRRR 432 >gi|327302246|ref|XP_003235815.1| AAA family ATPase [Trichophyton rubrum CBS 118892] gi|326461157|gb|EGD86610.1| AAA family ATPase [Trichophyton rubrum CBS 118892] Length = 743 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N +++ ++ A VL GPPG GKT LA+ VA Sbjct: 482 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 538 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 539 ESRANFISIKGP 550 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A A ELGV F + S P I Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247 >gi|330790315|ref|XP_003283243.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum] gi|325086924|gb|EGC40307.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum] Length = 828 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E NF S GP Sbjct: 553 VLMYGPPGCGKTLLAKAIANECQANFISVKGP 584 >gi|326783297|ref|YP_004323757.1| clamp loader subunit [Prochlorococcus phage Syn33] gi|310005244|gb|ADO99633.1| clamp loader subunit [Prochlorococcus phage Syn33] Length = 313 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T+E+ + F+ + + ++L G G+GKTT+A+ + RELG ++ Sbjct: 11 RPQTIEDCILPANVKETFQSFVNQGE-----IPNLLLSGTAGVGKTTIAKALCRELGADY 65 Query: 83 RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 +G V +A A+ LT VL IDE + V+ +L ++E+F Sbjct: 66 YVINGSDEGRFLDTVRNQAKSFASTVSLTASAKHKVLIIDEADNTTPDVQLLLRASIEEF 125 Query: 133 Q 133 Q Sbjct: 126 Q 126 >gi|326783830|ref|YP_004324224.1| clamp loader subunit [Synechococcus phage S-SSM7] gi|310003842|gb|ADO98237.1| clamp loader subunit [Synechococcus phage S-SSM7] Length = 315 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 5/65 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T+E+ + K F++ + + ++L GPPG+GKTT+A+ + ELGV++ Sbjct: 12 RPKTVEDCILPETTKNTFKEFLKKGE-----IPNLLLSGPPGVGKTTVAKALCTELGVDY 66 Query: 83 RSTSG 87 +G Sbjct: 67 YVING 71 >gi|296161227|ref|ZP_06844036.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1] gi|295888568|gb|EFG68377.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1] Length = 634 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 200 VLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRDLFEQARQHAPAI 259 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 260 VFIDELDSL 268 >gi|302503873|ref|XP_003013896.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371] gi|291177462|gb|EFE33256.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371] Length = 743 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N +++ ++ A VL GPPG GKT LA+ VA Sbjct: 482 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 538 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 539 ESRANFISIKGP 550 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A A ELGV F + S P I Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247 >gi|254568858|ref|XP_002491539.1| Subunit of heteropentameric Replication factor C (RF-C) [Pichia pastoris GS115] gi|238031336|emb|CAY69259.1| Subunit of heteropentameric Replication factor C (RF-C) [Pichia pastoris GS115] gi|328351952|emb|CCA38351.1| Replication factor C subunit 2 [Pichia pastoris CBS 7435] Length = 324 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L+E + Q SN+ + + + + ++ + H+LF GPPG GKT+ +AREL Sbjct: 10 RPKKLDEVSAQ----SNV-IRVLSNQLKSANMPHLLFYGPPGTGKTSTILAMAREL 60 >gi|226941483|ref|YP_002796557.1| ATPase associated with various cellular activities AAA_3 [Laribacter hongkongensis HLHK9] gi|226716410|gb|ACO75548.1| ATPase associated with various cellular activities AAA_3 [Laribacter hongkongensis HLHK9] Length = 295 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 30/151 (19%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------- 107 H+L PG+GKTTLAQ +AR LG+ FR DL + N+ DR Sbjct: 34 HLLLEDIPGVGKTTLAQALARSLGLAFRRVQFTSDLLPADLTGV--NVFDRSSGQFRFEP 91 Query: 108 ------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161 ++ DEI+R S + L AME+ Q+ S V L ++ AT Sbjct: 92 GPLFSQLVLADEINRASPRTQSALLEAMEERQV--------SVDGVTRPLPDPFVVIATQ 143 Query: 162 ----RVGLLTNP--LQDRFGIPIRLNFYEIE 186 ++G+ P +DRF + +RL + + E Sbjct: 144 NPGEQIGVFPLPESQRDRFLMCLRLGYPDPE 174 >gi|218191584|gb|EEC74011.1| hypothetical protein OsI_08942 [Oryza sativa Indica Group] Length = 951 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ +A E G NF S +G + A L L + R + Sbjct: 698 VLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRLAPVI 757 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 758 IFVDEVDSL 766 >gi|149479783|ref|XP_001519056.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus] Length = 506 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 10/79 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELG-----VNFRSTSGPVIAK-----AGDLAALLTNLEDR 106 L GPPGLGKTTLA V+A+ G +N P I K A + ++L E Sbjct: 387 ALLCGPPGLGKTTLAHVIAKHAGYNVVEMNASDDRSPDIFKTRIEAATQMKSVLGAHEKP 446 Query: 107 DVLFIDEIHRLSIIVEEIL 125 + L IDEI + +L Sbjct: 447 NCLIIDEIDGAPTVTINVL 465 >gi|119513548|ref|ZP_01632566.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414] gi|119461797|gb|EAW42816.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414] Length = 628 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL +GPPG GKT LA+ +A E GV F S SG V A + L +D + Sbjct: 209 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 IFIDEI 274 >gi|15790472|ref|NP_280296.1| cell division cycle protein [Halobacterium sp. NRC-1] gi|169236208|ref|YP_001689408.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] gi|10580970|gb|AAG19776.1| cell division cycle protein [Halobacterium sp. NRC-1] gi|167727274|emb|CAP14060.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] Length = 759 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 50/236 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E+ +F + SGP I G+ L + D + Sbjct: 233 VLLHGPPGTGKTLIAKAVANEIDAHFETISGPEIMSKYYGESEEKLREVFDEAEENAPAI 292 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDL---MVGEGPSARSVKINLSRFTLIAATTRVGL 165 +F+DE+ ++ P + Q D+ +V + S + T+IAAT RV Sbjct: 293 VFVDELDSIA--------PKRGETQGDVERRVVAQLLSLMDGLEDRGDVTVIAATNRVDA 344 Query: 166 LTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223 + L+ RF I + + + K I+Q + +RG P + Sbjct: 345 IDPALRRGGRFDREIEIGVPDQDGRKEILQ-------------------VHTRGMPLVED 385 Query: 224 RLLRRVRDFAEVAHA------KTITREIADAALLRLAID-KMGFDQLDLRYLTMIA 272 L D+AE H +++ +E A AL R+ D + D++D L I+ Sbjct: 386 IDL---DDYAESTHGFVGADIESLAKEAAMNALRRVRPDIDLESDEIDAELLESIS 438 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 506 VLLYGPPGTGKTLLAKAVANEANSNFISVKGP 537 >gi|66812296|ref|XP_640327.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4] gi|74897137|sp|Q54SY2|NVL_DICDI RecName: Full=Putative ribosome biogenesis ATPase nvl; AltName: Full=Nuclear valosin-containing protein-like gi|60468363|gb|EAL66370.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4] Length = 867 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E NF S GP Sbjct: 603 VLMYGPPGCGKTLLAKAIASECQANFISVKGP 634 >gi|320528059|ref|ZP_08029225.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204] gi|320131685|gb|EFW24249.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204] Length = 619 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E V F S SG + A + +L + +++ + Sbjct: 206 ILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRSLFKDAKEKAPCI 265 Query: 109 LFIDEI 114 +FIDEI Sbjct: 266 VFIDEI 271 >gi|315039481|ref|XP_003169116.1| ribosome biogenesis ATPase RIX7 [Arthroderma gypseum CBS 118893] gi|311337537|gb|EFQ96739.1| ribosome biogenesis ATPase RIX7 [Arthroderma gypseum CBS 118893] Length = 743 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N +++ ++ A VL GPPG GKT LA+ VA Sbjct: 482 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 538 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 539 ESRANFISIKGP 550 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A A ELGV F + S P I Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247 >gi|302796450|ref|XP_002979987.1| hypothetical protein SELMODRAFT_111871 [Selaginella moellendorffii] gi|300152214|gb|EFJ18857.1| hypothetical protein SELMODRAFT_111871 [Selaginella moellendorffii] Length = 876 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 V+ GPPG GKT LA+ VA E +NF S GP + Sbjct: 629 VMLYGPPGTGKTLLAKAVATECSLNFLSVKGPEV 662 >gi|296446425|ref|ZP_06888369.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylosinus trichosporium OB3b] gi|296256060|gb|EFH03143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylosinus trichosporium OB3b] Length = 420 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G+GKT LAQ +AR L V F + +AG + + N+ Sbjct: 109 AKSNILLIGPTGVGKTMLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 168 Query: 104 -----EDRDVLFIDEIHRLS 118 R ++++DEI ++S Sbjct: 169 YNVERAQRGIVYVDEIDKIS 188 >gi|291569833|dbj|BAI92105.1| cell division protein FtsH [Arthrospira platensis NIES-39] Length = 612 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 223 >gi|301111033|ref|XP_002904596.1| replication factor C subunit 1 [Phytophthora infestans T30-4] gi|262095913|gb|EEY53965.1| replication factor C subunit 1 [Phytophthora infestans T30-4] Length = 770 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 16/73 (21%) Query: 23 RPRTLEEFTGQVEACSNLKVFI---EAAKARA-------------EALDHVLFVGPPGLG 66 +P+TL G +E LK ++ EA + VL GPPG+G Sbjct: 218 KPQTLNHMIGNIELGKKLKTWLLDWEAMHVKGTKKVPFSTKLSENRGAKTVLLSGPPGIG 277 Query: 67 KTTLAQVVARELG 79 KTT+A +VARE G Sbjct: 278 KTTIANLVARECG 290 >gi|225621124|ref|YP_002722382.1| ATP-dependent protease ATP-binding subunit [Brachyspira hyodysenteriae WA1] gi|225215944|gb|ACN84678.1| ATP-dependent protease ATP-binding subunit [Brachyspira hyodysenteriae WA1] Length = 410 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 30/143 (20%) Query: 6 GLLSRNVSQEDADISLLRPRT----LEEFT-GQ--------VEACSNLKVFIEAAKARAE 52 + + ++D DI +L P+ L+E+ GQ V ++ K + A+ + + Sbjct: 48 NMQKKKSKEKDYDIKILPPKQIKSLLDEYVVGQDYAKKVLSVSVYNHYKRITQNAEDKND 107 Query: 53 A---LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------- 102 +VL +GP G GKT LA+ +A+ L V F + +AG + + N Sbjct: 108 VEIEKSNVLLIGPTGSGKTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQ 167 Query: 103 -------LEDRDVLFIDEIHRLS 118 L ++ +++IDEI ++S Sbjct: 168 NADGDIKLAEKGIIYIDEIDKIS 190 >gi|57234811|ref|YP_181136.1| ATP-dependent metalloprotease FtsH [Dehalococcoides ethenogenes 195] gi|57225259|gb|AAW40316.1| ATP-dependent metalloprotease FtsH [Dehalococcoides ethenogenes 195] Length = 608 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L +GPPG GKT LA+ +A E GV F S SG + G A+ + +L D+ + Sbjct: 195 ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCI 254 Query: 109 LFIDEI 114 +FIDEI Sbjct: 255 IFIDEI 260 >gi|51891601|ref|YP_074292.1| methanol dehydrogenase regulatory protein [Symbiobacterium thermophilum IAM 14863] gi|51855290|dbj|BAD39448.1| methanol dehydrogenase regulatory protein [Symbiobacterium thermophilum IAM 14863] Length = 318 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 24/156 (15%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLED--------- 105 HVL G PGL KT L + +A+ LGV+FR P + A + + N D Sbjct: 40 HVLIEGVPGLAKTLLVRSLAQALGVSFRRIQFTPDLMPADVVGTTVFNPRDLTFEVRRGP 99 Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 ++L DE++R + L AME+ Q+ L P F +IA + Sbjct: 100 VFTNLLLADEVNRTPPKTQSALLEAMEERQVTLDGQPYPLPEP-------FMVIATQNPI 152 Query: 164 GLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQR 194 T PL DRF + I++++ E+ + I++R Sbjct: 153 EYEGTYPLPEAQLDRFLMKIQMDYPAAEEERAILER 188 >gi|115437804|ref|NP_001043385.1| Os01g0574500 [Oryza sativa Japonica Group] gi|75330321|sp|Q8LQJ8|FTSH5_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 5, mitochondrial; Short=OsFTSH5; Flags: Precursor gi|20521392|dbj|BAB91903.1| cell division protein ftsH (ftsH)-like [Oryza sativa Japonica Group] gi|113532916|dbj|BAF05299.1| Os01g0574500 [Oryza sativa Japonica Group] gi|125570901|gb|EAZ12416.1| hypothetical protein OsJ_02306 [Oryza sativa Japonica Group] Length = 715 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 266 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 296 >gi|88801526|ref|ZP_01117054.1| ATP-dependent protease ATP-binding subunit [Polaribacter irgensii 23-P] gi|88782184|gb|EAR13361.1| ATP-dependent protease ATP-binding subunit [Polaribacter irgensii 23-P] Length = 411 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 29/130 (22%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD---------HVLFVGP 62 D++L +P+ ++EF GQ E ++ V + R + D +++ VG Sbjct: 57 DLTLKKPKEIKEFLDQYIIGQDETKRSMSVAVYNHYKRLLQTKDDDDVEIEKSNIVLVGE 116 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDV 108 G GKT +A+ +AR L V F V+ +AG D+ ++L+ L R + Sbjct: 117 TGTGKTLVAKTIARMLNVPFAIVDATVLTQAGYVGEDVESILSKLLQTADYDVEKAQRGI 176 Query: 109 LFIDEIHRLS 118 +FIDEI +++ Sbjct: 177 VFIDEIDKIA 186 >gi|307197038|gb|EFN78410.1| Replication factor C subunit 1 [Harpegnathos saltator] Length = 1045 Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 22/119 (18%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQV---EACSNLKVFIE------------AAKARAEA 53 + NVS E + RP+TL++ GQ + NL V++ + + ++ Sbjct: 492 TTNVSSEPL-VEKYRPKTLKQIIGQQGDRSSAHNLYVWLRDWHKNRQDPKSSSKQNNGQS 550 Query: 54 LDHVLFVGPPGLGKTTLAQVVARELG-----VNFRSTSGPVIAKAGDLAALLTNLEDRD 107 L G PG+GKTT AQ+V +ELG N T + K ++ LL+N +D Sbjct: 551 FKAALLSGSPGVGKTTTAQIVCKELGYDLLEFNASDTRSKTLLKE-QVSGLLSNTTMKD 608 >gi|302659175|ref|XP_003021281.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517] gi|291185172|gb|EFE40663.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517] Length = 747 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N +++ ++ A VL GPPG GKT LA+ VA Sbjct: 486 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 542 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 543 ESRANFISIKGP 554 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A A ELGV F + S P I Sbjct: 218 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 251 >gi|255536256|ref|YP_003096627.1| ATP-dependent Clp protease ATP-binding subunit clpX [Flavobacteriaceae bacterium 3519-10] gi|255342452|gb|ACU08565.1| ATP-dependent Clp protease ATP-binding subunit clpX [Flavobacteriaceae bacterium 3519-10] Length = 393 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 30/145 (20%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD-- 55 +E S + + D+ L +P+ ++ F GQ +A L V + R A D Sbjct: 40 KENNTSESFAPADSIAELKKPKEIKTFLDQYVIGQDQAKKQLSVAVYNHYKRLLHAKDEN 99 Query: 56 --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL 103 +++ +G G GKT LA+ +AREL V F ++ +AG D+ ++L+ L Sbjct: 100 REVEIEKSNIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRL 159 Query: 104 ----------EDRDVLFIDEIHRLS 118 ++ ++FIDEI +++ Sbjct: 160 LMVADYDVEKAEKGIVFIDEIDKIA 184 >gi|226290677|gb|EEH46161.1| ribosome biogenesis ATPase RIX7 [Paracoccidioides brasiliensis Pb18] Length = 716 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N +++ A+ A VL GPPG GKT LA+ VA Sbjct: 455 ADIGALGGVRDELSTAIVEPIRNPEIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 511 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 512 ESRANFISVKGP 523 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108 VL GPPG GKT +A A ELGV F + S P I +G+ AL + E+ + Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFEEAKKVAPCL 273 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 274 IFIDEIDAIT 283 >gi|218188506|gb|EEC70933.1| hypothetical protein OsI_02523 [Oryza sativa Indica Group] Length = 702 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 253 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 283 >gi|209525311|ref|ZP_03273853.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] gi|209494326|gb|EDZ94639.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] Length = 612 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 223 >gi|189485258|ref|YP_001956199.1| ATP-dependent protease La [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|302425076|sp|B1GZQ6|LON_UNCTG RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|170287217|dbj|BAG13738.1| ATP-dependent protease La [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 802 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 22/26 (84%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF 82 + F+GPPG+GKT++A+ VAR LG NF Sbjct: 363 LCFIGPPGVGKTSIAKSVARSLGRNF 388 >gi|91773970|ref|YP_566662.1| AAA family ATPase, CDC48 subfamily protein [Methanococcoides burtonii DSM 6242] gi|91712985|gb|ABE52912.1| VCP-like ATPase, AAA family [Methanococcoides burtonii DSM 6242] Length = 738 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT +AQ VA E NF S GP Sbjct: 498 ILLYGPPGTGKTLIAQAVANEANANFISIKGP 529 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 V+ GPPG GKT +A+ VA E NF +GP I Sbjct: 225 VILYGPPGTGKTLIAKAVANESRANFLYVAGPEI 258 >gi|3892650|dbj|BAA34546.1| ruvB [Clostridium histolyticum] Length = 54 Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 19/34 (55%), Positives = 25/34 (73%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD 55 LRP+ L E+ GQ + +NL VFI+AAK R E+LD Sbjct: 21 LRPQKLNEYIGQKKVKTNLNVFIKAAKNRNESLD 54 >gi|326389783|ref|ZP_08211348.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus JW 200] gi|325994265|gb|EGD52692.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus JW 200] Length = 510 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 16/121 (13%) Query: 10 RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61 N+++ + D S + T ++ G E LKV I+ K A+ +LF G Sbjct: 65 NNITETNEDASHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYG 124 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDE 113 PPG GKT LA +A E F S SG V A + AL + ++FIDE Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDE 184 Query: 114 I 114 I Sbjct: 185 I 185 >gi|320450983|ref|YP_004203079.1| cell division protein FtsH [Thermus scotoductus SA-01] gi|320151152|gb|ADW22530.1| cell division protein FtsH [Thermus scotoductus SA-01] Length = 617 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 V+ N K ++E AE VL VGPPG GKT LA+ VA E GV F S S Sbjct: 181 VDFLKNPKKYLELG---AEIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS 230 >gi|300114316|ref|YP_003760891.1| ATP-dependent protease la [Nitrosococcus watsonii C-113] gi|299540253|gb|ADJ28570.1| ATP-dependent protease La [Nitrosococcus watsonii C-113] Length = 773 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 87/230 (37%), Gaps = 56/230 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL----------------AALL 100 + FVGPPG+GKT++ Q +AR LG F S + +L A+ Sbjct: 348 LCFVGPPGVGKTSVGQSMARALGRKFERMSLGGLHDESELRGHRRTYIGAMPGRIIRAIR 407 Query: 101 TNLEDRDVLFIDEIHRL--------SIIVEEILYPA----MEDFQLDLMVGEGPSARSVK 148 +L +DEI +L + + EIL PA D LDL Sbjct: 408 RTGYQNPLLMLDEIDKLGRDFRGDPAAALLEILDPAQNAEFHDNYLDL-----------P 456 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 +LS+ + + + PL DR I +RL Y E+ + I +R G Sbjct: 457 FDLSKIFFVTTANTLDTIPRPLLDRMEI-LRLPGYSDEEKQHIARRYLIGRQIREAGLSE 515 Query: 199 TGLAVTDEAACEIAMRS------RGTPRIAGRLLRRVRDFAEVAHAKTIT 242 L++ DE + R R R+ GR+ R+V + +T Sbjct: 516 IQLSIPDETLSYLIRRYTREAGVRELERMLGRIARKVATQVATGQTQPVT 565 >gi|326790541|ref|YP_004308362.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM 5427] gi|326541305|gb|ADZ83164.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM 5427] Length = 579 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 19/112 (16%) Query: 22 LRPRTLE----EFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTL 70 + P+ L+ G VEA ++ I + AK A ++ GPPG GKT + Sbjct: 139 IEPKDLKIDFSHIAGNVEAKEQVEDVIDFMKNPEQYAKMGARMPKGLILYGPPGTGKTLM 198 Query: 71 AQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------EDRDVLFIDEI 114 A+ +A+E GV F S SG V G A+ + ++ ++ V+FIDEI Sbjct: 199 AKAIAKEAGVAFFSASGSDFVQMYVGVGASRVRDIFKEARKHEKAVIFIDEI 250 >gi|118590046|ref|ZP_01547450.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM 12614] gi|118437543|gb|EAV44180.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM 12614] Length = 421 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189 >gi|15899546|ref|NP_344151.1| AAA ATPase family protein [Sulfolobus solfataricus P2] gi|284174685|ref|ZP_06388654.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2] gi|13816186|gb|AAK42941.1| AAA family ATPase [Sulfolobus solfataricus P2] gi|261601318|gb|ACX90921.1| AAA ATPase central domain protein [Sulfolobus solfataricus 98/2] Length = 585 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 27/42 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA 98 +L GPPG GKT++A+ +A +L NF SG ++ AG L A Sbjct: 362 ILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSGAGPLDA 403 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAKA-GDLAALLTNLEDR------DV 108 V+ GPPG GKTT+A+ +A +LG F +++K G+ LL + D+ V Sbjct: 95 VILFGPPGTGKTTIAKALANKLGWAYFELRPSKILSKWYGESELLLDSFFDQVEINTPAV 154 Query: 109 LFIDEIHRLSI 119 +FIDE+ L++ Sbjct: 155 VFIDELDSLAM 165 >gi|296803659|ref|XP_002842682.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480] gi|238846032|gb|EEQ35694.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480] Length = 743 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N +++ ++ A VL GPPG GKT LA+ VA Sbjct: 482 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 538 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 539 ESRANFISIKGP 550 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A A ELGV F + S P I Sbjct: 213 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 246 >gi|221632324|ref|YP_002521545.1| metalloprotease FtsH [Thermomicrobium roseum DSM 5159] gi|310943092|sp|B9KXV3|FTSH1_THERP RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|221157088|gb|ACM06215.1| metalloprotease FtsH [Thermomicrobium roseum DSM 5159] Length = 652 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT L++ VA E GV F S SG + G A+ + +L D+ + Sbjct: 199 VLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCI 258 Query: 109 LFIDEI 114 +FIDEI Sbjct: 259 VFIDEI 264 >gi|254455799|ref|ZP_05069228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus Pelagibacter sp. HTCC7211] gi|207082801|gb|EDZ60227.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus Pelagibacter sp. HTCC7211] Length = 422 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 107 AKSNILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 166 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 167 YNVEKAQRGIVYIDEVDKIS 186 >gi|119484306|ref|ZP_01618923.1| cell division protein [Lyngbya sp. PCC 8106] gi|119457780|gb|EAW38903.1| cell division protein [Lyngbya sp. PCC 8106] Length = 612 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 223 >gi|73669810|ref|YP_305825.1| cell division control protein 48 AAA family protein [Methanosarcina barkeri str. Fusaro] gi|72396972|gb|AAZ71245.1| cell division control protein 48 AAA family protein [Methanosarcina barkeri str. Fusaro] Length = 775 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA+E NF S GP I Sbjct: 535 ILLYGPPGTGKTLIAKAVAKESNANFISVKGPEI 568 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 V+ GPPG GKT +A+ VA E G +F +GP I G+ L + + V Sbjct: 235 VILYGPPGTGKTLIAKAVANESGASFHYIAGPEIVGKFYGESEERLRKIFEEATQDAPSV 294 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 295 IFIDEIDSIA 304 >gi|71986063|ref|NP_498750.2| hypothetical protein F44B9.8 [Caenorhabditis elegans] gi|55584161|sp|P34429|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName: Full=Activator 1 subunit 5 gi|52839833|gb|AAK95878.2|L23648_8 Hypothetical protein F44B9.8 [Caenorhabditis elegans] Length = 368 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP L+E + L FIE L H+LF GPPG GKTT AR++ Sbjct: 36 RPSKLDELVAHEQIVKTLTKFIEN-----RTLPHLLFYGPPGTGKTTTVLAAARQM 86 >gi|16082630|ref|NP_394950.1| replication factor C small subunit [Thermoplasma acidophilum DSM 1728] gi|73920752|sp|Q9HI47|RFCS_THEAC RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit Length = 318 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 37/230 (16%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78 RP++L E G+ E LK F+E + + H+LF G G GKT+ A +A EL Sbjct: 10 RPKSLSEIYGEDENIQKLKSFVEKKE-----IPHLLFAGSVGTGKTSTAIALAIELFGDS 64 Query: 79 ------GVNFRSTSG--PVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 +N + +G + K D+A + +N +LF+DE +L+ + L M Sbjct: 65 WKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFKILFLDEADQLTAEAQAALRRTM 124 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189 E + +RF I + + P+Q R + +R E + Sbjct: 125 EIYS----------------ETTRF--IFSCNYSSKIIPPIQSR-TVVMRFRPVPDEYIS 165 Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 +Q AK G + +E+ + S G R A +L+ V E++ K Sbjct: 166 RKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQAVYTSGEISPKK 215 >gi|218295185|ref|ZP_03496021.1| ATP-dependent metalloprotease FtsH [Thermus aquaticus Y51MC23] gi|218244388|gb|EED10913.1| ATP-dependent metalloprotease FtsH [Thermus aquaticus Y51MC23] Length = 615 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 V+ N K ++E AE VL VGPPG GKT LA+ VA E GV F S S Sbjct: 181 VDFLKNPKKYLELG---AEIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS 230 >gi|168187052|ref|ZP_02621687.1| putative Cell division protease FtsH homolog [Clostridium botulinum C str. Eklund] gi|169295060|gb|EDS77193.1| putative Cell division protease FtsH homolog [Clostridium botulinum C str. Eklund] Length = 657 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78 T ++ G E L+ ++ K + LD +L VGPPG GKT LA+ VA E Sbjct: 161 TFKDVAGADEEKGELEEIVDFLKEPKKYLDMGARIPKGILLVGPPGTGKTLLAKAVAGEA 220 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 221 GVPFFSISG 229 >gi|158335586|ref|YP_001516758.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158305827|gb|ABW27444.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 611 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 192 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 222 >gi|90425061|ref|YP_533431.1| vesicle-fusing ATPase [Rhodopseudomonas palustris BisB18] gi|90107075|gb|ABD89112.1| Vesicle-fusing ATPase [Rhodopseudomonas palustris BisB18] Length = 647 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 8/82 (9%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------ 103 EA VL GPPG GKT +A+ VA E GV F +GP I + G+ +L + Sbjct: 141 EAPKGVLLYGPPGCGKTLIARTVACEAGVYFLHVNGPEIIQKHYGESEEMLRRIFADARK 200 Query: 104 EDRDVLFIDEIHRLSIIVEEIL 125 + ++F DEI ++ E +L Sbjct: 201 QPAAIIFFDEIDAIAPNRETVL 222 >gi|70606569|ref|YP_255439.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639] gi|30088847|gb|AAP13472.1| AAA family ATPase [Sulfolobus acidocaldarius] gi|68567217|gb|AAY80146.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639] Length = 773 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 506 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 539 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108 +L GPPG+GKT LA+ VA E F S +GP I G+ L + ED + Sbjct: 233 ILLYGPPGVGKTLLAKAVANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 292 Query: 109 LFIDEIHRLSIIVEEIL 125 +FIDEI ++ +E++ Sbjct: 293 IFIDEIDAIAPKRDEVI 309 >gi|73748233|ref|YP_307472.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. CBDB1] gi|73659949|emb|CAI82556.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. CBDB1] Length = 608 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L +GPPG GKT LA+ +A E GV F S SG + G A+ + +L D+ + Sbjct: 195 ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCI 254 Query: 109 LFIDEI 114 +FIDEI Sbjct: 255 IFIDEI 260 >gi|86143055|ref|ZP_01061477.1| putative methanol denhydrogenase-related protein [Leeuwenhoekiella blandensis MED217] gi|85830500|gb|EAQ48959.1| putative methanol denhydrogenase-related protein [Leeuwenhoekiella blandensis MED217] Length = 347 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 38/169 (22%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDRD------- 107 HVL G PG+ KT A++ A+ L F R P + + L + N++ D Sbjct: 72 HVLIEGVPGIAKTVTAKLFAKTLSTGFSRIQFTPDLMPSDVLGTSVLNMKTSDFEFKHGP 131 Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 ++ IDEI+R + L+ ME+ Q+ + + +L + ++ AT Sbjct: 132 IFSNIVLIDEINRAPAKTQAALFEVMEERQITI--------DGHRYDLEKPFMVLAT--- 180 Query: 164 GLLTNPLQ------------DRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 NP++ DRF I++N+ ++ED I++ + TG Sbjct: 181 ---QNPIEQEGTYALPEAQLDRFLFKIKVNYPDLEDEIEILKSQNERTG 226 >gi|113477219|ref|YP_723280.1| FtsH peptidase [Trichodesmium erythraeum IMS101] gi|110168267|gb|ABG52807.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Trichodesmium erythraeum IMS101] Length = 613 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 224 >gi|321476962|gb|EFX87921.1| hypothetical protein DAPPUDRAFT_305607 [Daphnia pulex] Length = 464 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFI-EAAKARAEALDHVLFVGPPGL 65 +L R++ Q+D ++ L E +E L +++ E K VL VGPPG Sbjct: 168 MLERDIVQKDPNVHWADIADLAEAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGT 227 Query: 66 GKTTLAQVVARELGVNFRSTSGPVI 90 GKT LA+ VA E G F + S + Sbjct: 228 GKTMLAKAVATECGTTFFNVSSSTL 252 >gi|320535321|ref|ZP_08035440.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema phagedenis F0421] gi|320147821|gb|EFW39318.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema phagedenis F0421] Length = 414 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL----------T 101 +VL VGP G GKT LA+ +A+++ V F + +AG D+ +L Sbjct: 111 NVLLVGPTGSGKTLLAKTLAQKMKVPFAIADATTLTEAGYVGEDVENILLKLIQNAGGDI 170 Query: 102 NLEDRDVLFIDEIHRLS 118 N +R ++FIDEI ++S Sbjct: 171 NAAERGIIFIDEIDKIS 187 >gi|302334898|ref|YP_003800105.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084] gi|301318738|gb|ADK67225.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084] Length = 660 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 224 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 254 >gi|302788426|ref|XP_002975982.1| hypothetical protein SELMODRAFT_104715 [Selaginella moellendorffii] gi|300156258|gb|EFJ22887.1| hypothetical protein SELMODRAFT_104715 [Selaginella moellendorffii] Length = 580 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 92/228 (40%), Gaps = 43/228 (18%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR--- 106 E + +L GPPG GK+ LA+ +A E V F S P V +G+ A L L Sbjct: 39 EHMKALLLHGPPGCGKSLLAEAIANEASVPFFKVSAPEVVSGTSGESEAKLRTLFSEAFR 98 Query: 107 ---DVLFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 ++FIDE+ + IV +++ M++ E S K L Sbjct: 99 VAPAIIFIDEVDAICSKRESAQREMERRIVTQLMV-CMDEIDYAPRGSESEGGDSNK--L 155 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 R +IAAT R L L+ RF I L ++ D K +Q LT LA E Sbjct: 156 RRLLVIAATNRPEALDQALRRRFDREICL---KVPDEKARLQ---ILTVLASKLRLDGEF 209 Query: 212 AMR--SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 + +R TP G A K +T+E AA+ R+A + Sbjct: 210 DFKAIARRTPGFVG------------ADLKVLTKEAGVAAIRRIAAKR 245 >gi|298372621|ref|ZP_06982611.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroidetes oral taxon 274 str. F0058] gi|298275525|gb|EFI17076.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroidetes oral taxon 274 str. F0058] Length = 404 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 29/125 (23%) Query: 23 RPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL----------DHVLFVGPPGLGK 67 +PR ++ F GQ EA L V + R L +++ VG G GK Sbjct: 59 KPREIKAFLDQYVIGQDEAKKFLSVAVYNHYKRISQLTDDNDVEIEKSNIIMVGATGTGK 118 Query: 68 TTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDE 113 T LA+ +A++L V F V+ +AG D+ ++LT L ++ ++FIDE Sbjct: 119 TLLARTIAQKLHVPFTIVDATVLTEAGYVGEDIESILTRLLQAADYNVAAAEKGIVFIDE 178 Query: 114 IHRLS 118 I +++ Sbjct: 179 IDKIA 183 >gi|301116741|ref|XP_002906099.1| peroxisome assembly factor, putative [Phytophthora infestans T30-4] gi|262109399|gb|EEY67451.1| peroxisome assembly factor, putative [Phytophthora infestans T30-4] Length = 893 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ +A E +NF S GP Sbjct: 626 ILLYGPPGTGKTLLAKAIATECNLNFLSVKGP 657 >gi|242310140|ref|ZP_04809295.1| zinc metallopeptidase [Helicobacter pullorum MIT 98-5489] gi|239523437|gb|EEQ63303.1| zinc metallopeptidase [Helicobacter pullorum MIT 98-5489] Length = 642 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL VGPPG GKT LA+ VA E V F S SG V A + L N + + Sbjct: 216 VLLVGPPGTGKTLLAKAVAGEANVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKNAPSI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|210630009|ref|ZP_03296210.1| hypothetical protein COLSTE_00094 [Collinsella stercoris DSM 13279] gi|210160721|gb|EEA91692.1| hypothetical protein COLSTE_00094 [Collinsella stercoris DSM 13279] Length = 705 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL VGPPG GKT LA+ VA E GV F + SG V A + L + +++ + Sbjct: 249 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSEFVEMFVGVGASRVRDLFKSAKEQAPSI 308 Query: 109 LFIDEI 114 +FIDEI Sbjct: 309 IFIDEI 314 >gi|220927544|ref|YP_002504453.1| ATP-dependent metalloprotease FtsH [Clostridium cellulolyticum H10] gi|310943126|sp|B8I4B9|FTSH_CLOCE RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|219997872|gb|ACL74473.1| ATP-dependent metalloprotease FtsH [Clostridium cellulolyticum H10] Length = 619 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E G E L +E KA + ++ VL VGPPG GKT LA+ V+ E Sbjct: 162 TFENVAGADEEKEELAEIVEFLKAPKKFVELGARIPKGVLLVGPPGTGKTLLAKAVSGEA 221 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 222 GVPFFSISG 230 >gi|110669061|ref|YP_658872.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum walsbyi DSM 16790] gi|109626808|emb|CAJ53276.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum walsbyi DSM 16790] Length = 742 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K G+ L + E + Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSI 285 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 286 IFIDELDSIAPKREDV 301 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A VL GPPG GKT +A+ VA E NF S GP Sbjct: 494 DAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGP 530 >gi|33860785|ref|NP_892346.1| cell division protein FtsH2 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633727|emb|CAE18685.1| cell division protein FtsH2 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 618 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 199 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 229 >gi|116753844|ref|YP_842962.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta thermophila PT] gi|116665295|gb|ABK14322.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT] Length = 719 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 8/81 (9%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLED 105 EA VL GPPG GKT LA+ +A E +F + SGP I G+ L L E+ Sbjct: 210 EAPKGVLLHGPPGTGKTLLARALASETNAHFETLSGPEIMSKYYGESEERLRQLFKTAEE 269 Query: 106 R--DVLFIDEIHRLSIIVEEI 124 ++ IDEI ++ EE+ Sbjct: 270 NAPSIILIDEIDSIAPKREEV 290 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E NF S GP Sbjct: 488 ILLYGPPGTGKTLLAKAVATESQANFISVKGP 519 >gi|326482765|gb|EGE06775.1| ribosome biogenesis ATPase RIX7 [Trichophyton equinum CBS 127.97] Length = 743 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N +++ ++ A VL GPPG GKT LA+ VA Sbjct: 482 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 538 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 539 ESRANFISIKGP 550 Score = 38.9 bits (89), Expect = 0.98, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A A ELGV F + S P I Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247 >gi|326470013|gb|EGD94022.1| ribosome biogenesis ATPase RIX7 [Trichophyton tonsurans CBS 112818] Length = 743 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N +++ ++ A VL GPPG GKT LA+ VA Sbjct: 482 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 538 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 539 ESRANFISIKGP 550 Score = 38.9 bits (89), Expect = 1.00, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A A ELGV F + S P I Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247 >gi|323475288|gb|ADX85894.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A] gi|323478013|gb|ADX83251.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4] Length = 769 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 502 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 535 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108 +L GPPG+GKT LA+ +A E F S +GP I G+ L + ED + Sbjct: 229 ILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 288 Query: 109 LFIDEIHRLSIIVEEIL 125 +F+DEI ++ +E++ Sbjct: 289 IFVDEIDAIAPKRDEVI 305 >gi|301165513|emb|CBW25084.1| lon ATP-dependent protease [Bacteriovorax marinus SJ] Length = 828 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 37/174 (21%) Query: 61 GPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLTNLE- 104 GPPG+GKT+L + VA LG F S V A G + L +E Sbjct: 388 GPPGVGKTSLGRSVAEALGRKFYRFSLGGMRDEAEIKGHRRTYVGAMPGRIIQALKRVEV 447 Query: 105 DRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156 + V+ +DEI +L + E+L P +D + + +LS+ Sbjct: 448 NNPVIMLDEIDKLGQSFQGDPASALLEVLDPEQNSTFID-------NYLDIPFDLSKVLF 500 Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTD 205 IA +G + PL DR + I L+ Y IE+ K ++ + K GL +D Sbjct: 501 IATANYLGDIPEPLLDRMEV-IELSGYTIEEKVSIATKWVIPKQLKKHGLVKSD 553 >gi|284165453|ref|YP_003403732.1| ATPase AAA [Haloterrigena turkmenica DSM 5511] gi|284015108|gb|ADB61059.1| AAA family ATPase, CDC48 subfamily [Haloterrigena turkmenica DSM 5511] Length = 743 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K G+ L + E + Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSI 285 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 286 IFIDELDSIAPKREDV 301 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E NF S GP Sbjct: 499 VLLYGPPGTGKTLMAKAVANETNANFISVRGP 530 >gi|281208808|gb|EFA82983.1| peroxisomal biogenesis factor 1 [Polysphondylium pallidum PN500] Length = 1212 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA +A E G+NF S GP Sbjct: 892 LLLYGPPGCGKTMLASSIAGEFGLNFISVKGP 923 >gi|289432284|ref|YP_003462157.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. GT] gi|288946004|gb|ADC73701.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. GT] Length = 604 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L +GPPG GKT LA+ +A E GV F S SG + G A+ + +L D+ + Sbjct: 191 ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCI 250 Query: 109 LFIDEI 114 +FIDEI Sbjct: 251 IFIDEI 256 >gi|255024485|ref|ZP_05296471.1| cell division protein FtsH [Listeria monocytogenes FSL J1-208] Length = 240 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 8/67 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 172 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 231 Query: 109 LFIDEIH 115 +FIDEI Sbjct: 232 IFIDEID 238 >gi|257057516|ref|YP_003135348.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis DSM 43017] gi|256587388|gb|ACU98521.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis DSM 43017] Length = 798 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ AR +AL VL GPPG GKT LA+ VA E GV F + SG Sbjct: 180 VEELQEIKDFLQNP-ARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISG 237 >gi|254526296|ref|ZP_05138348.1| ATP-dependent metallopeptidase HflB subfamily protein [Prochlorococcus marinus str. MIT 9202] gi|221537720|gb|EEE40173.1| ATP-dependent metallopeptidase HflB subfamily protein [Prochlorococcus marinus str. MIT 9202] Length = 617 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228 >gi|218245163|ref|YP_002370534.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|257058189|ref|YP_003136077.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] gi|218165641|gb|ACK64378.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|256588355|gb|ACU99241.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] Length = 616 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227 >gi|229581482|ref|YP_002839881.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.N.15.51] gi|228012198|gb|ACP47959.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.N.15.51] Length = 769 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 502 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 535 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108 +L GPPG+GKT LA+ +A E F S +GP I G+ L + ED + Sbjct: 229 ILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 288 Query: 109 LFIDEIHRLSIIVEEIL 125 +F+DEI ++ +E++ Sbjct: 289 IFVDEIDAIAPKRDEVI 305 >gi|126695586|ref|YP_001090472.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9301] gi|126542629|gb|ABO16871.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9301] Length = 617 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228 >gi|118576898|ref|YP_876641.1| replication factor C small subunit [Cenarchaeum symbiosum A] gi|118195419|gb|ABK78337.1| replication factor C small subunit [Cenarchaeum symbiosum A] Length = 311 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 28/214 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ L + Q E + IEA A + H+LF G G+GKTT A +AR++ Sbjct: 7 RPKKLADVVDQKEIIGS----IEALLKNAGEMPHLLFSGSAGVGKTTTALCIARQV---- 58 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFI-DEIHRLSIIV--EEILYPAMEDFQLDLMVG 139 GP I D L ++R + + D++ R S EEI + + + D M Sbjct: 59 ---LGPHIQ---DNLLELNASDERGIGMVRDKVKRFSNFAAFEEIPFKIIILDEADEMTA 112 Query: 140 EGPSA--RSVK--INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193 + +A R+++ + RF ++A + + +P+Q R + F I + + + Q Sbjct: 113 DAQTALRRTIEDASKICRFIIVA--NNISKIIDPIQSRCAV---YKFTSIPEKEAMAQLK 167 Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 + AK ++ +E E+ +S G R A +L+ Sbjct: 168 KIAKGEKASIDEEGLKEVYEQSEGDLRHAINILQ 201 >gi|160872052|ref|ZP_02062184.1| DNA polymerase III subunit tau [Rickettsiella grylli] gi|159120851|gb|EDP46189.1| DNA polymerase III subunit tau [Rickettsiella grylli] Length = 523 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 36/127 (28%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP++ +E GQ C LK + R + + H LF G G+GKTTLA+++A+ L Sbjct: 11 RPQSFDELIGQESTCRILKNAL-----RTQRIHHAYLFTGTRGVGKTTLARLLAKCLNCQ 65 Query: 82 FRSTSGPV----------IAKAGDL----AALLTNLED-RDVL---------------FI 111 + T P + DL AA T +ED RD+L I Sbjct: 66 TQITPEPCNQCISCQAIHANRFTDLIEVDAASRTKVEDTRDLLADVHYTPSQGRYKIYLI 125 Query: 112 DEIHRLS 118 DE+H LS Sbjct: 126 DEVHMLS 132 >gi|393291|gb|AAA16622.1| ATPase [Yarrowia lipolytica] Length = 1025 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 756 ILFYGPPGTGKTLLAKAIATTFSLNFFSVKGP 787 >gi|297583715|ref|YP_003699495.1| ATP-dependent protease La [Bacillus selenitireducens MLS10] gi|297142172|gb|ADH98929.1| ATP-dependent protease La [Bacillus selenitireducens MLS10] Length = 774 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 40/191 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + GPPG+GKT+LA+ VAR L F R + G V +A G + + R Sbjct: 349 LCLTGPPGVGKTSLARSVARSLDRKFVRMSLGGVRDEAEIRGHRRTYVGAMPGRIIQGMK 408 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V +DEI +L S + E+L P + D + E +LS Sbjct: 409 KAGTMNPVFLLDEIDKLVHDFRGDPSASLLEVLDPEQNNTFSDHFIEE-------PYDLS 461 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203 + I +G + PL+DR I + E+E K I + G L V Sbjct: 462 KVMFITTANNIGAIPAPLRDRMEIIHIPGYTEVEKKEIAKRYLLPKQIKEHGLSKGKLQV 521 Query: 204 TDEAACEIAMR 214 DEA ++ R Sbjct: 522 KDEAILKVVRR 532 >gi|256846388|ref|ZP_05551845.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp. 3_1_36A2] gi|256718157|gb|EEU31713.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp. 3_1_36A2] Length = 484 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 35/248 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + E +G+ E +LK+ ++ K+ A A LF GP G+GKTT+A+++A+ GVN Sbjct: 10 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63 Query: 83 RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + +G + + A+ L ++ IDEI L E+I Y +E + Sbjct: 64 LNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120 Query: 134 LDLMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNF-- 182 ++ E N TL I ATT + + + R R +F Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ---RYDFKP 177 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 ++E++K ++ K L++TD+ I S G+ R + +L R+ A+ K I Sbjct: 178 LDLEEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERL---IVTANGKEID 234 Query: 243 REIADAAL 250 +IA+ L Sbjct: 235 LKIAEDTL 242 >gi|237753269|ref|ZP_04583749.1| zinc metallopeptidase [Helicobacter winghamensis ATCC BAA-430] gi|229375536|gb|EEO25627.1| zinc metallopeptidase [Helicobacter winghamensis ATCC BAA-430] Length = 642 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNL--EDRDV 108 VL VGPPG GKT LA+ VA E V F S SG V A + L N E + Sbjct: 216 VLLVGPPGTGKTLLAKAVAGEANVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPSI 275 Query: 109 LFIDEI 114 +FIDEI Sbjct: 276 IFIDEI 281 >gi|227828221|ref|YP_002830001.1| ATPase AAA [Sulfolobus islandicus M.14.25] gi|227830979|ref|YP_002832759.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15] gi|229579858|ref|YP_002838257.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.G.57.14] gi|229585449|ref|YP_002843951.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27] gi|238620412|ref|YP_002915238.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4] gi|284998468|ref|YP_003420236.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5] gi|227457427|gb|ACP36114.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15] gi|227460017|gb|ACP38703.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25] gi|228010573|gb|ACP46335.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.G.57.14] gi|228020499|gb|ACP55906.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27] gi|238381482|gb|ACR42570.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4] gi|284446364|gb|ADB87866.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5] Length = 769 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 502 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 535 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108 +L GPPG+GKT LA+ +A E F S +GP I G+ L + ED + Sbjct: 229 ILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 288 Query: 109 LFIDEIHRLSIIVEEIL 125 +F+DEI ++ +E++ Sbjct: 289 IFVDEIDAIAPKRDEVI 305 >gi|303289655|ref|XP_003064115.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454431|gb|EEH51737.1| predicted protein [Micromonas pusilla CCMP1545] Length = 613 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F TSG Sbjct: 155 VLLVGPPGTGKTMLARAVAGEAGVPFFYTSG 185 >gi|281420562|ref|ZP_06251561.1| putative cell division protein FtsH [Prevotella copri DSM 18205] gi|281405335|gb|EFB36015.1| putative cell division protein FtsH [Prevotella copri DSM 18205] Length = 695 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ A +K ++ K + D L VGPPG GKT LA+ VA E Sbjct: 197 TFKDVAGQEGAKQEVKEIVDFLKNPQKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 256 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 GV F S SG V A + L +++ ++FIDEI Sbjct: 257 GVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIIFIDEI 300 >gi|148243292|ref|YP_001228449.1| cell division protein FtsH [Synechococcus sp. RCC307] gi|147851602|emb|CAK29096.1| Cell division protein FtsH [Synechococcus sp. RCC307] Length = 618 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 199 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 229 >gi|147669015|ref|YP_001213833.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. BAV1] gi|146269963|gb|ABQ16955.1| membrane protease FtsH catalytic subunit [Dehalococcoides sp. BAV1] Length = 604 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L +GPPG GKT LA+ +A E GV F S SG + G A+ + +L D+ + Sbjct: 191 ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCI 250 Query: 109 LFIDEI 114 +FIDEI Sbjct: 251 IFIDEI 256 >gi|126653288|ref|ZP_01725399.1| cell division protein [Bacillus sp. B14905] gi|126589962|gb|EAZ84091.1| cell division protein [Bacillus sp. B14905] Length = 660 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 185 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 244 Query: 109 LFIDEI 114 +FIDEI Sbjct: 245 IFIDEI 250 >gi|145544529|ref|XP_001457949.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425768|emb|CAK90552.1| unnamed protein product [Paramecium tetraurelia] Length = 526 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 25/162 (15%) Query: 46 AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA-------- 97 A ++++ L ++LF G PG GKT A+++A G++F SG I K G+ A Sbjct: 276 AKQSQSAPLRNLLFHGQPGTGKTLFAKLLAYNSGLHFAIISGGDIEKLGEQAVPEIDKLF 335 Query: 98 ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ----LDLMVGEGPSARSVKINLSR 153 A + ++FIDE E I Y Q L + + +A + Sbjct: 336 AWCQSTPKGTLIFIDE-------AEAIFYKRSSSKQTSAALSTFLAQTSAAS------KK 382 Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 ++LI AT L + DR ++ ++ E ++++G Sbjct: 383 YSLILATNLPNKLDEAILDRIDQIVKFDYLNEEQRVKLLKKG 424 >gi|123965493|ref|YP_001010574.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9515] gi|123199859|gb|ABM71467.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9515] Length = 619 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 200 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 230 >gi|14571708|emb|CAC42781.1| peroxin 6 [Helianthus annuus] Length = 908 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E +NF S GP Sbjct: 661 VLLYGPPGTGKTLLAKAVATECFLNFLSVKGP 692 >gi|90962325|ref|YP_536241.1| cell division protein [Lactobacillus salivarius UCC118] gi|90821519|gb|ABE00158.1| Cell division protein [Lactobacillus salivarius UCC118] Length = 692 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 227 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPSI 286 Query: 109 LFIDEI 114 +FIDEI Sbjct: 287 IFIDEI 292 >gi|46198343|ref|YP_004010.1| cell division protein ftsH [Thermus thermophilus HB27] gi|46195965|gb|AAS80383.1| cell division protein ftsH [Thermus thermophilus HB27] Length = 618 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 V+ N K ++E AE VL VGPPG GKT LA+ VA E GV F S S Sbjct: 181 VDFLKNPKKYLEIG---AEIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS 230 >gi|11500001|ref|NP_071247.1| methanol dehydrogenase regulatory protein (moxR) [Archaeoglobus fulgidus DSM 4304] gi|2650675|gb|AAB91247.1| methanol dehydrogenase regulatory protein (moxR) [Archaeoglobus fulgidus DSM 4304] Length = 324 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 32/223 (14%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100 K +E A A ++LF PGLGKT LA+V AR +G ++R D+ + Sbjct: 28 KNLVEKMLAAALTNGNILFEDYPGLGKTLLAKVFARVIGADYRRVQFTPDLLPSDIIGVK 87 Query: 101 TNLEDR----------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 DR +VL DEI+R + L AME+ Q+ + + ++ Sbjct: 88 IWRGDRFEFVKGPIFTNVLLADEINRSPPKTQAALLEAMEEKQITV------EGETFSLS 141 Query: 151 LSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYE-IEDLKTIVQRGAKLTGLAVTD 205 + F L T PL DRF + +R + E IE+ I++R T+ Sbjct: 142 MPFFVLATQNPIEQEGTYPLPEAQMDRFMLRMRPGYPESIEEEMEILRRRISWRKDDPTE 201 Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KTITREIAD 247 + P ++ RR++D E + K+I + I++ Sbjct: 202 DVE----------PVVSLETFRRIQDAVEAVYVDKSILKYISE 234 >gi|15897129|ref|NP_341734.1| AAA ATPase family protein [Sulfolobus solfataricus P2] gi|284174370|ref|ZP_06388339.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2] gi|13813310|gb|AAK40524.1| AAA family ATPase [Sulfolobus solfataricus P2] gi|261601791|gb|ACX91394.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2] Length = 769 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 502 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 535 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108 +L GPPG+GKT LA+ +A E F S +GP I G+ L + ED + Sbjct: 229 ILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 288 Query: 109 LFIDEIHRLSIIVEEIL 125 +F+DEI ++ +E++ Sbjct: 289 IFVDEIDAIAPKRDEVI 305 >gi|324511079|gb|ADY44624.1| Katanin p60 ATPase-containing subunit [Ascaris suum] Length = 371 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 9/73 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFR--STSGPVIAKAGDLAALLTNLED-------RD 107 VL GPPG GKT L++ +ARE+ F S+S + +G L+ L D Sbjct: 132 VLLYGPPGTGKTQLSRSIAREINSRFYQVSSSDLISTWSGQSEKLIRELFDDALSFAGTS 191 Query: 108 VLFIDEIHRLSII 120 V+F+DEI L I Sbjct: 192 VVFVDEIDSLCRI 204 >gi|325142574|gb|EGC64970.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis 961-5945] Length = 341 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 EKAQRGIVYIDEIDKIS 190 >gi|330841424|ref|XP_003292698.1| hypothetical protein DICPUDRAFT_157442 [Dictyostelium purpureum] gi|325077042|gb|EGC30782.1| hypothetical protein DICPUDRAFT_157442 [Dictyostelium purpureum] Length = 1147 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ +A E +NF S GP Sbjct: 902 ILLYGPPGTGKTLLAKAIATECSLNFLSVKGP 933 >gi|302306576|ref|NP_982982.2| ABR036Wp [Ashbya gossypii ATCC 10895] gi|299788582|gb|AAS50806.2| ABR036Wp [Ashbya gossypii ATCC 10895] Length = 360 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNL 103 EA VL GPPG GKT +A+ +ARE G NF S I K D L N Sbjct: 123 EAPTGVLLYGPPGCGKTMIAKALARESGANFLSIRMSSIMDKWYGESNKIVDALFSLANK 182 Query: 104 EDRDVLFIDEI 114 ++FIDEI Sbjct: 183 IQPCIIFIDEI 193 >gi|227891605|ref|ZP_04009410.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase [Lactobacillus salivarius ATCC 11741] gi|301300311|ref|ZP_07206518.1| ATP-dependent metallopeptidase HflB [Lactobacillus salivarius ACS-116-V-Col5a] gi|227866752|gb|EEJ74173.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase [Lactobacillus salivarius ATCC 11741] gi|300214976|gb|ADJ79392.1| Cell division protein [Lactobacillus salivarius CECT 5713] gi|300852084|gb|EFK79761.1| ATP-dependent metallopeptidase HflB [Lactobacillus salivarius ACS-116-V-Col5a] Length = 692 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 227 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPSI 286 Query: 109 LFIDEI 114 +FIDEI Sbjct: 287 IFIDEI 292 >gi|257053680|ref|YP_003131513.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM 12940] gi|256692443|gb|ACV12780.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM 12940] Length = 742 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K G+ L + E + Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSI 285 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 286 IFIDELDSIAPKREDV 301 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E NF S GP Sbjct: 499 VLLYGPPGTGKTLMAKAVANETDANFISVRGP 530 >gi|169825698|ref|YP_001695856.1| cell division protease ftsH-like protein [Lysinibacillus sphaericus C3-41] gi|168990186|gb|ACA37726.1| Cell division protease ftsH-like protein [Lysinibacillus sphaericus C3-41] Length = 658 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 185 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 244 Query: 109 LFIDEI 114 +FIDEI Sbjct: 245 IFIDEI 250 >gi|76802176|ref|YP_327184.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas pharaonis DSM 2160] gi|76558041|emb|CAI49627.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas pharaonis DSM 2160] Length = 740 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K G+ L + E + Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSI 285 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 286 IFIDELDSIAPKREDV 301 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E NF S GP Sbjct: 499 VLLYGPPGTGKTLMAKAVANETNANFISVRGP 530 >gi|46390947|dbj|BAD16461.1| transitional endoplasmic reticulum ATPase-like [Oryza sativa Japonica Group] Length = 473 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ +A E G NF S +G + A L L + R + Sbjct: 220 VLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRLAPVI 279 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 280 IFVDEVDSL 288 >gi|118581289|ref|YP_902539.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM 2379] gi|310946754|sp|A1AT11|FTSH_PELPD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|118503999|gb|ABL00482.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM 2379] Length = 623 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL VGPPG GKT LA+ VA E GV F S S V A + L TN + + Sbjct: 210 VLLVGPPGTGKTLLARAVAGEAGVAFFSISASQFIEMFVGVGASRVRDLFTNAKKAAPSI 269 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 270 VFIDEL 275 >gi|289628151|ref|ZP_06461105.1| ATP-dependent protease La [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330871234|gb|EGH05943.1| ATP-dependent protease La [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 805 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMDV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 554 Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230 + L+++D A E R G + +L + VR Sbjct: 555 SKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589 >gi|254492062|ref|ZP_05105238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylophaga thiooxidans DMS010] gi|224462726|gb|EEF78999.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylophaga thiooxydans DMS010] Length = 423 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 29/138 (21%) Query: 10 RNVSQEDADISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEA----------L 54 + +S ++AD L PR + E GQ +A L V + R + Sbjct: 52 QELSADEADSKLPTPREINEALDNYVIGQEKAKRYLSVAVYNHYKRLRSGHKDDGVELSK 111 Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD 107 ++L +GP G GKT LA+ +AR+L V F + +AG + + N+ D D Sbjct: 112 SNILLIGPTGSGKTLLAETLARQLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 171 Query: 108 V-------LFIDEIHRLS 118 V ++IDEI ++S Sbjct: 172 VDKAETGIVYIDEIDKIS 189 >gi|254422833|ref|ZP_05036551.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] gi|196190322|gb|EDX85286.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] Length = 626 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228 >gi|170076675|ref|YP_001733313.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. PCC 7002] gi|169884344|gb|ACA98057.1| ATP-dependent metalloprotease FtsH subfamily [Synechococcus sp. PCC 7002] Length = 620 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227 >gi|148508161|gb|ABQ75952.1| AAA-type ATPase [uncultured haloarchaeon] Length = 752 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K G+ L + E + Sbjct: 236 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSI 295 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 296 IFIDELDSIAPKREDV 311 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A VL GPPG GKT +A+ VA E NF S GP Sbjct: 504 DAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGP 540 >gi|55980372|ref|YP_143669.1| cell division protein FtsH [Thermus thermophilus HB8] gi|55771785|dbj|BAD70226.1| cell division protein FtsH [Thermus thermophilus HB8] Length = 618 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 V+ N K ++E AE VL VGPPG GKT LA+ VA E GV F S S Sbjct: 181 VDFLKNPKKYLEIG---AEIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS 230 >gi|67902154|ref|XP_681333.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4] gi|40740496|gb|EAA59686.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4] gi|259480821|tpe|CBF73811.1| TPA: subunit of heteropentameric Replication factor (Eurofung) [Aspergillus nidulans FGSC A4] Length = 398 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ +G + + + F+EA + L H+L GPPG GKT+ +AR + Sbjct: 52 RPNTLDDVSGHKDILATINRFVEANQ-----LPHLLLYGPPGTGKTSTILALARRI 102 >gi|309808245|ref|ZP_07702154.1| putative DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 01V1-a] gi|308168533|gb|EFO70642.1| putative DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 01V1-a] Length = 173 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 9/123 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV 80 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 10 WRPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINC 64 Query: 81 NFRSTSGPVIAKAGDLAA---LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 P + LAA +L ++ + D + + + I +++ Y + + + Sbjct: 65 MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124 Query: 138 VGE 140 + E Sbjct: 125 IDE 127 >gi|320106404|ref|YP_004181994.1| ATP-dependent protease La [Terriglobus saanensis SP1PR4] gi|319924925|gb|ADV82000.1| ATP-dependent protease La [Terriglobus saanensis SP1PR4] Length = 818 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 39/192 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 + FVGPPG+GKT+L + +AR LG F S + A G + L Sbjct: 369 LCFVGPPGVGKTSLGKSIARALGRKFSRISLGGMHDEAEIRGHRRTYIGAMPGQIIQNLK 428 Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 +E D +F +DEI +L + + E L PA D + + +LS Sbjct: 429 RVETNDPVFMLDEIDKLGRDFRGDPASALLETLDPAQNGTFRDHYLDQ-------PFDLS 481 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAVTD-- 205 + I ++ + PL DR I I L Y E+ K +V R K G+ + Sbjct: 482 KVLFICTANQLDPIPAPLLDRMEI-IELTGYTEEEKVSIAEKYLVPRQVKENGIEAVEGG 540 Query: 206 EAACEIAMRSRG 217 EA E + + G Sbjct: 541 EAKIEFSREALG 552 >gi|299750239|ref|XP_001836624.2| ribosome biogenesis ATPase RIX7 [Coprinopsis cinerea okayama7#130] gi|298408810|gb|EAU85195.2| ribosome biogenesis ATPase RIX7 [Coprinopsis cinerea okayama7#130] Length = 799 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRDV---- 108 VL GPPG GKT LA +A ELGV F + S P I +G+ L + E + V Sbjct: 195 VLLHGPPGCGKTLLANAIAGELGVPFINISAPSIVSGMSGESEKTLRDTFEEAKRVAPCL 254 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 255 LFIDEIDAIT 264 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 EA VL GPPG GKT LA+ VA E NF S GP Sbjct: 522 EAPCGVLMWGPPGCGKTLLAKAVANESRANFISVKGP 558 >gi|295133941|ref|YP_003584617.1| ATPase [Zunongwangia profunda SM-A87] gi|294981956|gb|ADF52421.1| ATPase [Zunongwangia profunda SM-A87] Length = 1649 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 R + + +L + PPG GKTTL + +A LG+ F +GP I Sbjct: 1281 RTDRMGMLLLISPPGYGKTTLMEYIANRLGLVFMKINGPAIG 1322 >gi|291280407|ref|YP_003497242.1| ATPase AAA family [Deferribacter desulfuricans SSM1] gi|290755109|dbj|BAI81486.1| ATPase, AAA family [Deferribacter desulfuricans SSM1] Length = 310 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 22/157 (14%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLED--------- 105 H+L PGLGKTTLA +A+ +GV F D+ L + N E Sbjct: 38 HILIEDSPGLGKTTLAIAIAKSMGVTFSRIQCTNDLLPTDITGLNIFNKETGEFEFKPGP 97 Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 ++L +DEI+R + + L AM + Q+ + EG ++ K++ F + + Sbjct: 98 IFNNILLVDEINRATPKTQSALLEAMGEKQVTI---EG---KTFKLSQPYFVIATQNSVE 151 Query: 164 GLLTNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGA 196 T PL DRF + I L + E+ I++ G+ Sbjct: 152 SYGTFPLPESQLDRFIMKINLGYPTKEEELEILKGGS 188 >gi|218888168|ref|YP_002437489.1| ATP-dependent protease La [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759122|gb|ACL10021.1| ATP-dependent protease La [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 898 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 + F GPPG+GKT+L + +AR +G F+ S + A G + L Sbjct: 475 LCFAGPPGVGKTSLGRSIARAMGRKFQRISLGGMRDEAEIRGHRRTYIGAMPGRIVQSLK 534 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 L R+ VL +DEI ++ S + E+L P + D L+ V Sbjct: 535 QLGTRNPVLMLDEIDKIGSDFRGDPSSALLEVLDPEQNFSFSDHYLN-----------VP 583 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 +LS+ I ++ + PL+DR + I + Y +++ I +R Sbjct: 584 FDLSKVMFICTANQLDTIPPPLRDRMEV-ISIPGYTMQEKLAIARR 628 >gi|203284683|ref|YP_002222423.1| cell division protein [Borrelia duttonii Ly] gi|203288216|ref|YP_002223231.1| cell division protein [Borrelia recurrentis A1] gi|201084126|gb|ACH93717.1| cell division protein [Borrelia duttonii Ly] gi|201085436|gb|ACH95010.1| cell division protein [Borrelia recurrentis A1] Length = 636 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ EA L +E K + E + VL VG PG GKT LA+ VA E Sbjct: 171 TFKDVAGQEEAKQELGEVVEFLKYPKKFEKIGARIPKGVLLVGSPGTGKTLLAKAVAGEA 230 Query: 79 GVNFRSTSG 87 GVNF SG Sbjct: 231 GVNFFHMSG 239 >gi|220910286|ref|YP_002485597.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] gi|219866897|gb|ACL47236.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] Length = 623 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 204 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234 >gi|123967784|ref|YP_001008642.1| cell division protein FtsH2 [Prochlorococcus marinus str. AS9601] gi|123197894|gb|ABM69535.1| cell division protein FtsH2 [Prochlorococcus marinus str. AS9601] Length = 617 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228 >gi|56751224|ref|YP_171925.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] gi|81299108|ref|YP_399316.1| FtsH peptidase [Synechococcus elongatus PCC 7942] gi|56686183|dbj|BAD79405.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] gi|81167989|gb|ABB56329.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Synechococcus elongatus PCC 7942] Length = 613 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 224 >gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae] Length = 353 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP L E + L FIE L H+LF GPPG GKTT AR++ Sbjct: 18 RPSKLNELVAHEQVVKTLTKFIEN-----RTLPHLLFYGPPGTGKTTTVLAAARKM 68 >gi|333029343|ref|ZP_08457404.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides coprosuis DSM 18011] gi|332739940|gb|EGJ70422.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides coprosuis DSM 18011] Length = 413 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +++ VG G GKT LA+ +A++L V F V+ +AG D+ ++LT L Sbjct: 115 NIIMVGSTGTGKTLLARTIAKQLNVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 ++ ++FIDEI +++ Sbjct: 175 EKAEKGIVFIDEIDKIA 191 >gi|323699100|ref|ZP_08111012.1| ATP-dependent protease La [Desulfovibrio sp. ND132] gi|323459032|gb|EGB14897.1| ATP-dependent protease La [Desulfovibrio desulfuricans ND132] Length = 838 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 33/162 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 + FVGPPG+GKT+L + +AR LG F S + A G + + Sbjct: 417 LCFVGPPGVGKTSLGRSIARSLGRKFHRMSLGGMRDEAEIRGHRRTYIGAMPGRIIQAIK 476 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R+ V+ +DEI +L S + E+L P D + +V +LS Sbjct: 477 QCGTRNPVIMLDEIDKLGSDFRGDPSSALLEVLDPEQNFSFTDHYL-------NVPFDLS 529 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + + + + PL DR + IR+ Y E KT++ R Sbjct: 530 KVMFVCTANMLDSIPGPLMDRMEV-IRIPGY-TEQEKTVITR 569 >gi|295397832|ref|ZP_06807896.1| cell division protein FtsH [Aerococcus viridans ATCC 11563] gi|294973929|gb|EFG49692.1| cell division protein FtsH [Aerococcus viridans ATCC 11563] Length = 721 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 236 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSEFVEMFVGVGASRVRDLFENAKKSAPSI 295 Query: 109 LFIDEI 114 +FIDEI Sbjct: 296 IFIDEI 301 >gi|225678278|gb|EEH16562.1| cdcH [Paracoccidioides brasiliensis Pb03] Length = 801 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N +++ A+ A VL GPPG GKT LA+ VA Sbjct: 538 ADIGALGGVRDELSTAIVEPIRNPEIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 594 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 595 ESRANFISVKGP 606 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108 VL GPPG GKT +A A ELGV F + S P I +G+ AL + E+ + Sbjct: 265 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFEEAKKVAPCL 324 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 325 IFIDEIDAIT 334 >gi|145640255|ref|ZP_01795839.1| Holliday junction DNA helicase B [Haemophilus influenzae R3021] gi|145274841|gb|EDK14703.1| Holliday junction DNA helicase B [Haemophilus influenzae 22.4-21] Length = 80 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +RP+ L ++ GQ + + +FI+AAK R +ALDH+L + K L Sbjct: 23 IRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLILALQVWEKQRL 71 >gi|90419400|ref|ZP_01227310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aurantimonas manganoxydans SI85-9A1] gi|90336337|gb|EAS50078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aurantimonas manganoxydans SI85-9A1] Length = 422 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|308487512|ref|XP_003105951.1| CRE-RFC-4 protein [Caenorhabditis remanei] gi|308254525|gb|EFO98477.1| CRE-RFC-4 protein [Caenorhabditis remanei] Length = 362 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ Q E + LK + + L H+LF GPPG GKT+ A R+L Sbjct: 22 RPKTLDDIAHQDEVVTMLK-----GALQGKDLPHLLFYGPPGTGKTSTALAFCRQL 72 >gi|225019293|ref|ZP_03708485.1| hypothetical protein CLOSTMETH_03246 [Clostridium methylpentosum DSM 5476] gi|224947924|gb|EEG29133.1| hypothetical protein CLOSTMETH_03246 [Clostridium methylpentosum DSM 5476] Length = 453 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 122/289 (42%), Gaps = 67/289 (23%) Query: 9 SRNVSQEDADISL-----LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFV 60 SR ++E IS+ RP+T+++ GQ + L+ I + + L +++F Sbjct: 20 SRFTNREKGVISMPLADRARPKTIDDVVGQKHLIGPGRPLRNIILSGE-----LPNMIFY 74 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-----EDRDVLFIDEIH 115 GP G GKTT+A+++A G +G A D+ ++ L ++ VL++DEI Sbjct: 75 GPSGTGKTTVARMIAENAGKRLHKLNG-TNASLADIKQVVGELDTIMGQNGIVLYLDEIQ 133 Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF- 174 L+ ++ L +E R TLIA+TT NP + Sbjct: 134 YLNKKQQQSLLEYIES--------------------GRITLIASTTE-----NPYFYIYN 168 Query: 175 GIPIRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA---GRLL 226 I R +E ++ + V+RG +L V +E E+ + T IA G + Sbjct: 169 AILSRATVFEFKSVPPQEAEAAVERGFRL----VAEEQKLELTLEEGVTAHIARGCGGDV 224 Query: 227 RRVRDFAEVA--------HAKTITREIADAALLRLAI--DKMGFDQLDL 265 R+ + E+ KT++ E+A + A+ D+ G + DL Sbjct: 225 RKALNTVELCVLAAELRDGKKTVSLELAKELTQKSAMRYDRAGDEHYDL 273 >gi|218187083|gb|EEC69510.1| hypothetical protein OsI_38748 [Oryza sativa Indica Group] Length = 1295 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 20/196 (10%) Query: 40 LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99 +K+ E A ++ L + VGP GLGKTTLA V R+L F+ + +++ D+ + Sbjct: 571 IKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKI 630 Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD----LMVGEGPSARSVK-INLSRF 154 + N+ + + E + I EE L A +F + +++ + S ++ K I + F Sbjct: 631 VRNIYCQ--VSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALF 688 Query: 155 -----TLIAATTR----VGLLTNPLQDR-FGI-PIRLNFYEIEDLKTIVQRGAKLTGLAV 203 + I TTR P DR F I P+ ++ + LK I G+K + Sbjct: 689 VNNCGSRIMTTTRNMAIAKSCCTPDHDRVFEIMPLSIDNSKSLFLKRIF--GSKDVCIPQ 746 Query: 204 TDEAACEIAMRSRGTP 219 DE EI + G+P Sbjct: 747 LDEVCYEILKKCGGSP 762 >gi|70950279|ref|XP_744476.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56524446|emb|CAH74286.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 725 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 15/88 (17%) Query: 41 KVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI----- 90 K+FI + + +DH +LF G G GKT LA+ +A+EL +F SG Sbjct: 275 KLFINM-NSDNDYIDHPCSSSLLFTGETGTGKTLLAKAIAKELNADFIHVSGSSFIELYI 333 Query: 91 ----AKAGDLAALLTNLEDRDVLFIDEI 114 +K +L N ++ V+FIDEI Sbjct: 334 GNGASKVRNLFKAAKNNKNPVVVFIDEI 361 >gi|148260430|ref|YP_001234557.1| ATP-dependent metalloprotease FtsH [Acidiphilium cryptum JF-5] gi|326403623|ref|YP_004283705.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301] gi|146402111|gb|ABQ30638.1| membrane protease FtsH catalytic subunit [Acidiphilium cryptum JF-5] gi|325050485|dbj|BAJ80823.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301] Length = 633 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 195 ILLVGPPGTGKTLLARAVAGEAGVTFFSISG 225 >gi|323136624|ref|ZP_08071705.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocystis sp. ATCC 49242] gi|322397941|gb|EFY00462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocystis sp. ATCC 49242] Length = 422 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G+GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGVGKTMLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R ++++DEI ++S Sbjct: 170 YNVERAQRGIVYVDEIDKIS 189 >gi|300867979|ref|ZP_07112618.1| FtsH peptidase [Oscillatoria sp. PCC 6506] gi|300334000|emb|CBN57796.1| FtsH peptidase [Oscillatoria sp. PCC 6506] Length = 612 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 223 >gi|269926167|ref|YP_003322790.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC BAA-798] gi|269789827|gb|ACZ41968.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC BAA-798] Length = 643 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT L++ VA E GV F S SG + G A+ + +L D+ + Sbjct: 197 VLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCI 256 Query: 109 LFIDEI 114 +FIDEI Sbjct: 257 VFIDEI 262 >gi|224418720|ref|ZP_03656726.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491] gi|253826750|ref|ZP_04869635.1| Cell division protein FtsH [Helicobacter canadensis MIT 98-5491] gi|313142239|ref|ZP_07804432.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491] gi|253510156|gb|EES88815.1| Cell division protein FtsH [Helicobacter canadensis MIT 98-5491] gi|313131270|gb|EFR48887.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491] Length = 643 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNL--EDRDV 108 VL VGPPG GKT LA+ VA E V F S SG V A + L N E + Sbjct: 217 VLLVGPPGTGKTLLAKAVAGEANVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPSI 276 Query: 109 LFIDEI 114 +FIDEI Sbjct: 277 IFIDEI 282 >gi|182411953|ref|YP_001817019.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1] gi|310946751|sp|B1ZMG6|FTSH_OPITP RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|177839167|gb|ACB73419.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1] Length = 614 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL VGPPG GKT LA+ VA E NF S SG V A + +L + + Sbjct: 210 VLLVGPPGTGKTMLAKAVAGEARANFYSLSGSDFVELYVGVGASRVRSLFKKARETAPSI 269 Query: 109 LFIDEI 114 +FIDEI Sbjct: 270 IFIDEI 275 >gi|157412585|ref|YP_001483451.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9215] gi|157387160|gb|ABV49865.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9215] Length = 617 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228 >gi|114799276|ref|YP_760783.1| ATP-dependent protease ATP-binding subunit ClpX [Hyphomonas neptunium ATCC 15444] gi|123128702|sp|Q0C0G0|CLPX_HYPNA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|114739450|gb|ABI77575.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hyphomonas neptunium ATCC 15444] Length = 420 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 114 NILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQSADYNV 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 ERAQRGIVYIDEIDKIS 190 >gi|148657290|ref|YP_001277495.1| ATPase [Roseiflexus sp. RS-1] gi|148569400|gb|ABQ91545.1| ATPase associated with various cellular activities, AAA_3 [Roseiflexus sp. RS-1] Length = 318 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 17/136 (12%) Query: 14 QEDADISLLRPRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 ++ AD++LL R +E QVE + +E A A HVL PGL KT +A+ Sbjct: 3 EQYADVALLGQRVIE----QVERVIVGKRAVLEQIMAATLAGGHVLLEDYPGLAKTLIAR 58 Query: 73 VVARELGVNFRS------------TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120 A LG+ FR T G V +A D L +++ DEI+R S Sbjct: 59 SFAAALGLEFRRIQFTPDLLPGDITGGYVYNRAADRFELRRGPVFANIVLADEINRASPK 118 Query: 121 VEEILYPAMEDFQLDL 136 + L AM++ Q+ L Sbjct: 119 TQSALLEAMQERQVTL 134 >gi|50549031|ref|XP_501986.1| YALI0C18689p [Yarrowia lipolytica] gi|51704274|sp|P36966|PEX6_YARLI RecName: Full=Peroxisomal biogenesis factor 6; AltName: Full=Peroxin-6; AltName: Full=Peroxisome biosynthesis protein PAY4 gi|49647853|emb|CAG82306.1| YALI0C18689p [Yarrowia lipolytica] Length = 1024 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +LF GPPG GKT LA+ +A +NF S GP Sbjct: 755 ILFYGPPGTGKTLLAKAIATTFSLNFFSVKGP 786 >gi|186682396|ref|YP_001865592.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] gi|186464848|gb|ACC80649.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] Length = 621 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 205 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 235 >gi|328872757|gb|EGG21124.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum] Length = 443 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA-GDLAALLTNL------EDRDV 108 +L GPPG GK+ LA+ VA E+ F S S ++ K GD L+ L + V Sbjct: 170 ILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKKNSV 229 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 230 IFIDEIDSL 238 >gi|298706855|emb|CBJ25819.1| AAA ATPase domain-containing protein [Ectocarpus siliculosus] Length = 1182 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +VF + K RA +L GPPG GKT LA+ VA E G+ F S GP Sbjct: 828 EVFGKGVKRRA----GILLYGPPGTGKTLLAKAVATECGLPFFSVKGP 871 >gi|296160892|ref|ZP_06843704.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1] gi|295888781|gb|EFG68587.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1] Length = 495 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 117/271 (43%), Gaps = 45/271 (16%) Query: 26 TLEEFTGQVEACSNLKVFIE----AAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA + LK +E A + R + VL VG PG GKT LA+ VA E Sbjct: 8 TFDDIAGIDEAKAELKQIVEFLRNAERYRRLGGKIPKGVLIVGAPGTGKTLLAKAVAGEA 67 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAME 130 GV F S SG + G AA + +L ++ ++FIDE+ L + + + Sbjct: 68 GVPFFSISGSAFVEMFVGVGAARVRDLFEQAQKKAPCIVFIDELDALGKVRGAGVTSGND 127 Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL--QDRFGIPIRLNF 182 + + L M G P+ S ++AAT R +L L RF I ++ Sbjct: 128 EREQTLNQLLVEMDGFQPN--------SGVIILAATNRPEILDPALLRPGRFDRHIAIDR 179 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 ++ + I+Q K LA D EIA R TP AG L V + A + HA Sbjct: 180 PDLNGRRQILQVHVKKVTLA-ADVDLAEIASR---TPGFAGADLANVVNEAAL-HA---- 230 Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIAR 273 A L + A+ + FD+ R +T + R Sbjct: 231 -----AELDKSAVGMVDFDEAIDRAMTGMER 256 >gi|296109413|ref|YP_003616362.1| 26S proteasome subunit P45 family [Methanocaldococcus infernus ME] gi|295434227|gb|ADG13398.1| 26S proteasome subunit P45 family [Methanocaldococcus infernus ME] Length = 421 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 8/89 (8%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VARE F G + K G+ A+L+ ++ + + Sbjct: 200 VLLYGPPGTGKTLLAKAVARETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSI 259 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +FIDEI ++ E L + Q LM Sbjct: 260 IFIDEIDAIAAKRTEALTGGDREVQRTLM 288 >gi|296120883|ref|YP_003628661.1| ATPase associated with various cellular activities AAA_3 [Planctomyces limnophilus DSM 3776] gi|296013223|gb|ADG66462.1| ATPase associated with various cellular activities AAA_3 [Planctomyces limnophilus DSM 3776] Length = 319 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 12/104 (11%) Query: 43 FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLT 101 IEA A HVL GPPGLGKT LA ++R L + R P + + + Sbjct: 27 LIEAVFVALLAEGHVLIEGPPGLGKTLLATTISRVLKCRYSRIQFTPDLMPSDVTGHSVY 86 Query: 102 NLEDR-----------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 NL++R ++L DEI+R + L AM++ Q+ Sbjct: 87 NLQERRFHFSEGPVFANLLLADEINRAPAKTQASLLEAMQECQV 130 >gi|221128917|ref|XP_002157293.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 422 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 9/70 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAALLTNL-------EDRD 107 +L GPPG GK+ +AQ V+ E+ F S TS +++ G+ L+ L R Sbjct: 157 ILLYGPPGTGKSRMAQAVSSEIECTFYSVTSSDLLSSWFGESEKLIKELFTHARTRSTRS 216 Query: 108 VLFIDEIHRL 117 V+FIDEI L Sbjct: 217 VIFIDEIDSL 226 >gi|168334136|ref|ZP_02692345.1| ATP-dependent metalloprotease FtsH [Epulopiscium sp. 'N.t. morphotype B'] Length = 577 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 15/98 (15%) Query: 32 GQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVARELGVNFRS 84 G VEA ++ ++ KA + D ++F GPPG GKT +A+ +A+E V F S Sbjct: 152 GNVEAKEQVQDIVDFIKAPHKYADMGATMPKGLIFYGPPGTGKTMMAKALAKEANVPFFS 211 Query: 85 TSGPVIAK--AGDLAALLTNL------EDRDVLFIDEI 114 SG + G A+ + L ++ V+FIDEI Sbjct: 212 VSGSDFMQMYVGVGASRIRELFREAKKSEKAVIFIDEI 249 >gi|150866810|ref|XP_001386533.2| 40 kDa putative membrane-spanning ATPase [Scheffersomyces stipitis CBS 6054] gi|149388066|gb|ABN68504.2| 40 kDa putative membrane-spanning ATPase [Scheffersomyces stipitis CBS 6054] Length = 357 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108 VLF GPPG GKT LA+ +A+E G F S I K D L N + Sbjct: 129 VLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSTIMDKWYGESNKITDAIFSLANKLQPCI 188 Query: 109 LFIDEI 114 +FIDEI Sbjct: 189 IFIDEI 194 >gi|148238691|ref|YP_001224078.1| cell division protein FtsH [Synechococcus sp. WH 7803] gi|147847230|emb|CAK22781.1| Cell division protein FtsH [Synechococcus sp. WH 7803] Length = 617 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228 >gi|312865755|ref|ZP_07725977.1| ATP-dependent metallopeptidase HflB [Streptococcus downei F0415] gi|311098630|gb|EFQ56852.1| ATP-dependent metallopeptidase HflB [Streptococcus downei F0415] Length = 666 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E GV F S SG V A + +L + + +R + Sbjct: 226 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAL 285 Query: 109 LFIDEI 114 +FIDEI Sbjct: 286 IFIDEI 291 >gi|254432227|ref|ZP_05045930.1| ATP-dependent metalloprotease FtsH [Cyanobium sp. PCC 7001] gi|197626680|gb|EDY39239.1| ATP-dependent metalloprotease FtsH [Cyanobium sp. PCC 7001] Length = 614 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 225 >gi|254421464|ref|ZP_05035182.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] gi|196188953|gb|EDX83917.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] Length = 613 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 224 >gi|189463817|ref|ZP_03012602.1| hypothetical protein BACINT_00150 [Bacteroides intestinalis DSM 17393] gi|189438767|gb|EDV07752.1| hypothetical protein BACINT_00150 [Bacteroides intestinalis DSM 17393] Length = 742 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69 ++ + L R + GQ EA + ++ +KA + L +LFVGP G+GKT Sbjct: 438 EDTTSLETLHARISAKIYGQEEAVRQVVEAVQMSKAGLLDENKPLASLLFVGPTGVGKTE 497 Query: 70 LAQVVARELGVNFR 83 +A+V+A ELG++ + Sbjct: 498 VAKVLASELGISLQ 511 >gi|162451421|ref|YP_001613788.1| endopeptidase LA [Sorangium cellulosum 'So ce 56'] gi|302425028|sp|A9GIS9|LON3_SORC5 RecName: Full=Lon protease 3; AltName: Full=ATP-dependent protease La 3 gi|161162003|emb|CAN93308.1| Endopeptidase LA [Sorangium cellulosum 'So ce 56'] Length = 830 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 80/192 (41%), Gaps = 45/192 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+LA+ +AR G F R + G V +A G L L Sbjct: 363 LCFVGPPGVGKTSLAKSIARATGRKFVRLSLGGVRDEAEIRGHRRTYIGALPGKLIQSLK 422 Query: 102 NL-EDRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 + + V +DE+ ++S + E+L P D LDL Sbjct: 423 KVGTNNPVFLLDEVDKMSTDFRGDPAAALLEVLDPEQNHTFNDHYLDL-----------D 471 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAV 203 +LS I + + PLQDR + I+L+ Y E E L K +V R K GL Sbjct: 472 YDLSDVMFITTANTLSGIPVPLQDRMEV-IQLSGYTEFEKLNIAVKYLVPRQRKECGLED 530 Query: 204 TDEAACEIAMRS 215 E A+R+ Sbjct: 531 VSLDFTEGALRT 542 >gi|45655620|ref|YP_003429.1| methanol dehydrogenase regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602591|gb|AAS72066.1| methanol dehydrogenase regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 357 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 43/222 (19%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLE-----EFTGQVEACSNLKVFIEAAKARAEALD 55 +M++E L ED + + ++ TL+ E TGQ E N+ V + Sbjct: 30 LMEKETL-------EDLEFARIKLETLKQELGKEITGQDEVIRNVLVCLICQ-------G 75 Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRD-- 107 HVL G PGL KT LA+ +A L +NF+ DL + T E R Sbjct: 76 HVLLEGMPGLAKTLLARSLASALDLNFKRIQFTPDLLPADLVGTVVFNPKTTEFETRKGP 135 Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 VL DEI+R V+ L +ME + + +G+ ++ K++ F +IA + Sbjct: 136 VFTGVLLADEINRAPAKVQSALLESME--EKTVTIGD----KTYKLD-KPFLVIATQNPI 188 Query: 164 GLL-TNPL----QDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 T PL DRF + I +++ +E+ +I+ + K++ Sbjct: 189 DQDGTYPLPEAQMDRFLMKINVDYPTLEEEVSILDQHGKISS 230 >gi|87125051|ref|ZP_01080898.1| cell division protein [Synechococcus sp. RS9917] gi|86167371|gb|EAQ68631.1| cell division protein [Synechococcus sp. RS9917] Length = 616 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227 >gi|330809354|ref|YP_004353816.1| cell division protein ftsH [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377462|gb|AEA68812.1| putative cell division protein ftsH [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 608 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 8/92 (8%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 VE S LK + A+ A L VGPPG GKT +A+ +A E GV F S SG + Sbjct: 169 VEIVSFLKDKAKYARLGAHIPKGTLLVGPPGTGKTLVAKAIAGEAGVPFFSISGSEFVEM 228 Query: 93 -AGDLAALLTNLEDRD------VLFIDEIHRL 117 G AA + +L ++ ++FIDE+ L Sbjct: 229 FVGVGAARVHDLFEQARQAAPCIIFIDELDAL 260 >gi|318042673|ref|ZP_07974629.1| cell division protein FtsH [Synechococcus sp. CB0101] Length = 614 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 225 >gi|291459314|ref|ZP_06598704.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str. F0262] gi|291418568|gb|EFE92287.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str. F0262] Length = 692 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VL 109 L VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ ++ Sbjct: 270 LLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGMGAAKVRDLFEQAKKKSPCII 329 Query: 110 FIDEI 114 FIDEI Sbjct: 330 FIDEI 334 >gi|260436648|ref|ZP_05790618.1| cell division protease FtsH [Synechococcus sp. WH 8109] gi|260414522|gb|EEX07818.1| cell division protease FtsH [Synechococcus sp. WH 8109] Length = 616 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227 >gi|222623676|gb|EEE57808.1| hypothetical protein OsJ_08386 [Oryza sativa Japonica Group] Length = 1167 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ +A E G NF S +G + A L L + R + Sbjct: 914 VLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRLAPVI 973 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 974 IFVDEVDSL 982 >gi|18401040|ref|NP_565616.1| ftsh4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] gi|75100022|sp|O80983|FTSH4_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 4, mitochondrial; Short=AtFTSH4; Flags: Precursor gi|20197264|gb|AAC31223.2| FtsH protease, putative [Arabidopsis thaliana] gi|330252705|gb|AEC07799.1| cell division protease ftsH-4 [Arabidopsis thaliana] Length = 717 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 263 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 293 >gi|78211853|ref|YP_380632.1| FtsH peptidase [Synechococcus sp. CC9605] gi|78196312|gb|ABB34077.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605] Length = 616 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227 >gi|61806330|ref|YP_214689.1| clamp loader subunit [Prochlorococcus phage P-SSM4] gi|61563874|gb|AAX46929.1| clamp loader subunit [Prochlorococcus phage P-SSM4] Length = 292 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 15/106 (14%) Query: 38 SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--------V 89 S K F+E + + ++L G G+GKTT+A+ + ELG +F +G V Sbjct: 3 STFKSFVEQGE-----IPNLLLSGTAGVGKTTIAKALCNELGADFYVINGSDEGRFLDTV 57 Query: 90 IAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 +A + AA LT VL IDE + V+ +L ++E+FQ Sbjct: 58 RNQAKNFAATVSLTAGAKHKVLIIDEADNTTPDVQLLLRASIEEFQ 103 >gi|33864841|ref|NP_896400.1| cell division protein FtsH2 [Synechococcus sp. WH 8102] gi|33632364|emb|CAE06820.1| cell division protein FtsH2 [Synechococcus sp. WH 8102] Length = 615 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 196 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 226 >gi|328543682|ref|YP_004303791.1| ATP-dependent Clp protease ATP-binding subunit ClpX [polymorphum gilvum SL003B-26A1] gi|326413426|gb|ADZ70489.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Polymorphum gilvum SL003B-26A1] Length = 421 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189 >gi|323701589|ref|ZP_08113261.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum nigrificans DSM 574] gi|323533362|gb|EGB23229.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum nigrificans DSM 574] Length = 608 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE V+ N K F E A+ VL GPPG GKT LA+ VA E GV F S SG Sbjct: 168 EELAEIVDFLKNPKKFNEIG---AKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISG 224 >gi|323356263|gb|EGA88067.1| Pim1p [Saccharomyces cerevisiae VL3] Length = 1133 Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 34/208 (16%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S+E I + E+ G V+ + FI K + ++ FVGPPG+GKT++ Sbjct: 583 SKEQYSIPRAKKILDEDHYGMVDVKDRILEFIAVGKLLGKVDGKIICFVGPPGVGKTSIG 642 Query: 72 QVVARELGVN-FRSTSGPVI--------------AKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G + A G + L + ++ ++ IDEI Sbjct: 643 KSIARALNRKFFRFSVGGMTDVAEIKGHRRTYIGALPGRVVQALKKCQTQNPLILIDEID 702 Query: 116 RL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P + LD + + I+LS+ + + + Sbjct: 703 KIGHGGIHGDPSAALLEVLDPEQNNSFLD-------NYLDIPIDLSKVLFVCTANSLETI 755 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL DR + I L Y ED I ++ Sbjct: 756 PRPLLDRMEV-IELTGYVAEDKVKIAEQ 782 >gi|315425454|dbj|BAJ47117.1| AAA family ATPase [Candidatus Caldiarchaeum subterraneum] Length = 726 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 16/105 (15%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G + ++ IE E H V+ GPPG GKT +A+ +A E Sbjct: 183 TYEDIGGLHDELQRIREMIELPLKHPELFRHLGIEPPKGVILYGPPGTGKTLIAKAIANE 242 Query: 78 LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEI 114 G +F S +GP I G+ A L + ++FIDE+ Sbjct: 243 TGAHFVSINGPEIMSKFYGESEARLREVFQEAEQNAPSIIFIDEL 287 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E NF S GP Sbjct: 495 ILLYGPPGTGKTLLAKAVATESQANFISVKGP 526 >gi|309355098|emb|CAP39475.2| hypothetical protein CBG_22959 [Caenorhabditis briggsae AF16] Length = 551 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP L E + L FIE L H+LF GPPG GKTT AR++ Sbjct: 233 RPSKLNELVAHEQVVKTLTKFIEN-----RTLPHLLFYGPPGTGKTTTVLAAARKM 283 >gi|297825729|ref|XP_002880747.1| hypothetical protein ARALYDRAFT_481469 [Arabidopsis lyrata subsp. lyrata] gi|297326586|gb|EFH57006.1| hypothetical protein ARALYDRAFT_481469 [Arabidopsis lyrata subsp. lyrata] Length = 718 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 263 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 293 >gi|296420764|ref|XP_002839938.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636146|emb|CAZ84129.1| unnamed protein product [Tuber melanosporum] Length = 422 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 17/148 (11%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP+ L++ GQ V L+ IE K + ++ G G GKTT+A+V+A Sbjct: 1 MRPKNLDDIHGQELVGRRGVLRGLIEEGKVPS-----MILWGAAGCGKTTIARVIAAMSS 55 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132 F S + D + ++ R +LF DEIHR + +++ +E Sbjct: 56 CRFIEISATA-SGVNDCKKIFIEAKNELVLTGRRTILFCDEIHRYTKAQQDVFLAPVEKG 114 Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIA 158 ++ L+ E PS + LSR A Sbjct: 115 EITLIGATTENPSFKVQSALLSRCRTFA 142 >gi|295674557|ref|XP_002797824.1| ribosome biogenesis ATPase RIX7 [Paracoccidioides brasiliensis Pb01] gi|226280474|gb|EEH36040.1| ribosome biogenesis ATPase RIX7 [Paracoccidioides brasiliensis Pb01] Length = 746 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N +++ A+ A VL GPPG GKT LA+ VA Sbjct: 485 ADIGALGGIRDELSTAIVEPIRNPEIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 541 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 542 ESRANFISVKGP 553 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108 VL GPPG GKT +A A ELGV F + S P I +G+ AL + E+ + Sbjct: 244 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFEEAKKVAPCL 303 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 304 VFIDEIDAIT 313 >gi|221505298|gb|EEE30952.1| paraplegin, putative [Toxoplasma gondii VEG] Length = 1188 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 L VGPPG GKT LA+ VA E GV F S SG + G A+ + L D + Sbjct: 678 ALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEIFVGVGASRVRELFDEARKVAPSI 737 Query: 109 LFIDEI 114 +FIDEI Sbjct: 738 IFIDEI 743 >gi|221484027|gb|EEE22331.1| peptidase M14 family protein [Toxoplasma gondii GT1] Length = 1188 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 L VGPPG GKT LA+ VA E GV F S SG + G A+ + L D + Sbjct: 678 ALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEIFVGVGASRVRELFDEARKVAPSI 737 Query: 109 LFIDEI 114 +FIDEI Sbjct: 738 IFIDEI 743 >gi|163796890|ref|ZP_02190847.1| AAA ATPase, central region [alpha proteobacterium BAL199] gi|159177879|gb|EDP62428.1| AAA ATPase, central region [alpha proteobacterium BAL199] Length = 403 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 12/105 (11%) Query: 47 AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------ 100 AK R L + GPPG GKTT+A+++A + F S V + DL Sbjct: 13 AKGR---LASCILWGPPGCGKTTIARLLAEHTDLEFVPLSA-VFSGVADLKKHFEAARGR 68 Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPS 143 +LF+DE+HR + ++ P +ED + L+ E PS Sbjct: 69 RAGGRGTLLFVDEVHRFNRAQQDGFLPVVEDGTITLVGATTENPS 113 >gi|454438|gb|AAA53625.1| LON gene of S. cerevisiae is downstream of the HAP 3 gene; Putative ATP-binding motif bp 1960 to bp 1986.; Putative catalytic site serine of serine proteases from bp 3109 to bp 3111 [Saccharomyces cerevisiae] Length = 1133 Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 34/208 (16%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S+E I + E+ G V+ + FI K + ++ FVGPPG+GKT++ Sbjct: 583 SKEQYSIPRAKKILDEDHYGMVDVKDRILEFIAVGKLLGKVDGKIICFVGPPGVGKTSIG 642 Query: 72 QVVARELGVN-FRSTSGPVI--------------AKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G + A G + L + ++ ++ IDEI Sbjct: 643 KSIARALNRKFFRFSVGGMTDVAEIKGHRRTYIGALPGRVVQALKKCQTQNPLILIDEID 702 Query: 116 RL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P + LD + + I+LS+ + + + Sbjct: 703 KIGHGGIHGDPSAALLEVLDPEQNNSFLD-------NYLDIPIDLSKVLFVCTANSLETI 755 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL DR + I L Y ED I ++ Sbjct: 756 PRPLLDRMEV-IELTGYVAEDKVKIAEQ 782 >gi|28493555|ref|NP_787716.1| cell division protein FtsH [Tropheryma whipplei str. Twist] gi|81437733|sp|Q83FV7|FTSH_TROWT RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|28476597|gb|AAO44685.1| cell division protein FtsH [Tropheryma whipplei str. Twist] Length = 666 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 20/206 (9%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L ++ + Sbjct: 198 VLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKQNSPSI 257 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 +FIDEI + ++ + L+ ++ E VK N+ LIAAT R +L Sbjct: 258 IFIDEIDAVGRRRGSGFGGGHDEREQTLNQLLVEM-DGFDVKTNI---ILIAATNRSDVL 313 Query: 167 TNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224 + L RF + ++ ++ I+Q A+ ++ + ++ + +R TP G Sbjct: 314 DSALLRPGRFDRHVAIDAPNLQGRLKILQVHARTKPVS----KSVDLEVLARKTPGFTGA 369 Query: 225 LLRRVRDFAEVAHAKTITREIADAAL 250 L V + A + A++ + I D AL Sbjct: 370 DLANVLNEAALLTARSNAQIIDDRAL 395 >gi|37522710|ref|NP_926087.1| cell division protein [Gloeobacter violaceus PCC 7421] gi|35213712|dbj|BAC91082.1| cell division protein [Gloeobacter violaceus PCC 7421] Length = 626 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 204 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVELFVGVGAARVRDLFEQAKQQAPCI 263 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 264 IFIDEL 269 >gi|88798488|ref|ZP_01114073.1| putative ABC transporter ATP-binding protein [Reinekea sp. MED297] gi|88778928|gb|EAR10118.1| putative ABC transporter ATP-binding protein [Reinekea sp. MED297] Length = 388 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 +H+ VGP G GKTTL +++A G++ TSG + D+A LL +L DR L E Sbjct: 178 EHLAIVGPSGAGKTTLGKLLA---GIHI-PTSGQLRLGGVDVAELLASLPDRITLLTQET 233 Query: 115 HRLS 118 H S Sbjct: 234 HVFS 237 >gi|87301887|ref|ZP_01084721.1| cell division protein [Synechococcus sp. WH 5701] gi|87283455|gb|EAQ75410.1| cell division protein [Synechococcus sp. WH 5701] Length = 614 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 225 >gi|237733854|ref|ZP_04564335.1| recombination protein rarA [Mollicutes bacterium D7] gi|229383192|gb|EEO33283.1| recombination protein rarA [Coprobacillus sp. D7] Length = 421 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 11/114 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+ L++ GQ V + L F++ + + ++ G PG GKTT+A +A +L Sbjct: 9 MRPQNLKDIIGQQHLVGPNAILTKFVQKSHPFS-----IILYGSPGCGKTTIAMALANDL 63 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF--IDEIHRLSIIVEEILYPAME 130 + +R + K ++ A++ + LF IDE+HRL+ ++ L ME Sbjct: 64 DIPYRIFNASTGNKK-EMDAIIEEAKLSGSLFVIIDEVHRLNKARQDDLLSHME 116 >gi|227824810|ref|ZP_03989642.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21] gi|226905309|gb|EEH91227.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21] Length = 646 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 15/101 (14%) Query: 29 EFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 + G EA L+ +E KA A+ VL GPPG GKT LA+ VA E GV Sbjct: 155 DVAGADEAKQELREVVEFLKAPQKYNQLGAKIPKGVLLYGPPGTGKTLLAKAVAGEAGVP 214 Query: 82 FRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 F S SG + G A+ + +L D+ ++FIDEI Sbjct: 215 FFSISGSDFVEMFVGVGASRVRDLFDQAKKNAPCIVFIDEI 255 >gi|220904981|ref|YP_002480293.1| ATP-dependent metalloprotease FtsH [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869280|gb|ACL49615.1| ATP-dependent metalloprotease FtsH [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 676 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +E VE SN K F + VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 164 DELAEVVEFLSNPKKFTRLGGRIPKG---VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 220 >gi|237836501|ref|XP_002367548.1| AFG3 ATPase family protein [Toxoplasma gondii ME49] gi|211965212|gb|EEB00408.1| AFG3 ATPase family protein [Toxoplasma gondii ME49] Length = 1188 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 L VGPPG GKT LA+ VA E GV F S SG + G A+ + L D + Sbjct: 678 ALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEIFVGVGASRVRELFDEARKVAPSI 737 Query: 109 LFIDEI 114 +FIDEI Sbjct: 738 IFIDEI 743 >gi|151946373|gb|EDN64595.1| ATP-dependent protease [Saccharomyces cerevisiae YJM789] gi|190408847|gb|EDV12112.1| ATP-dependent protease [Saccharomyces cerevisiae RM11-1a] gi|207347833|gb|EDZ73885.1| YBL022Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256269260|gb|EEU04582.1| Pim1p [Saccharomyces cerevisiae JAY291] gi|259144824|emb|CAY77763.1| Pim1p [Saccharomyces cerevisiae EC1118] gi|323334752|gb|EGA76125.1| Pim1p [Saccharomyces cerevisiae AWRI796] gi|323338803|gb|EGA80018.1| Pim1p [Saccharomyces cerevisiae Vin13] Length = 1133 Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 34/208 (16%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S+E I + E+ G V+ + FI K + ++ FVGPPG+GKT++ Sbjct: 583 SKEQYSIPRAKKILDEDHYGMVDVKDRILEFIAVGKLLGKVDGKIICFVGPPGVGKTSIG 642 Query: 72 QVVARELGVN-FRSTSGPVI--------------AKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G + A G + L + ++ ++ IDEI Sbjct: 643 KSIARALNRKFFRFSVGGMTDVAEIKGHRRTYIGALPGRVVQALKKCQTQNPLILIDEID 702 Query: 116 RL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P + LD + + I+LS+ + + + Sbjct: 703 KIGHGGIHGDPSAALLEVLDPEQNNSFLD-------NYLDIPIDLSKVLFVCTANSLETI 755 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL DR + I L Y ED I ++ Sbjct: 756 PRPLLDRMEV-IELTGYVAEDKVKIAEQ 782 >gi|150866932|ref|XP_001386694.2| hypothetical protein PICST_64463 [Scheffersomyces stipitis CBS 6054] gi|149388188|gb|ABN68665.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 935 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 41/176 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98 + GPPG GKT++A+ +A L + R+ G + + ++A Sbjct: 403 LCLTGPPGTGKTSIAKSIAESLNRKYVRIAMGGIQDVHEVKGHRRTYVGSIPGRI--ISA 460 Query: 99 LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 L ++ IDEI +L S EIL P + +D + VK++ Sbjct: 461 LKQAKTSNPLMLIDEIDKLDLSRSGGASSAFLEILDPEQNNAFVDNYI-------DVKVD 513 Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----GAKLTGL 201 LS+ + +G ++ PL+DR I I +N Y + I +R AK GL Sbjct: 514 LSKVLFVCTANYLGNISPPLRDRMEI-IEVNGYTNNEKIEIAKRHLIPDAAKKAGL 568 >gi|72390425|ref|XP_845507.1| replication factor C, subunit 2 [Trypanosoma brucei TREU927] gi|62360360|gb|AAX80776.1| replication factor C, subunit 2, putative [Trypanosoma brucei] gi|70802042|gb|AAZ11948.1| replication factor C, subunit 2, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261328911|emb|CBH11889.1| replication factor C, subunit 2, putative [Trypanosoma brucei gambiense DAL972] Length = 347 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP++L+E Q E L+ + + ++ H LF GPPG GKTT VA EL Sbjct: 22 IEKYRPKSLDEVKSQEEVVQALRSTLR----QGASMPHFLFHGPPGTGKTTAILAVAHEL 77 >gi|57642154|ref|YP_184632.1| replication factor C large subunit [Thermococcus kodakarensis KOD1] gi|62287361|sp|Q5JHP1|RFCL_PYRKO RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|57160478|dbj|BAD86408.1| replication factor C, large subunit [Thermococcus kodakarensis KOD1] Length = 499 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTTLAQVVARE 77 + RPR L E Q +A ++ ++EA +L GPPG+GKTT +A E Sbjct: 7 VEKYRPRKLSEIVNQEKALEQVRAWVEAWLHGNPPKKKALLLAGPPGVGKTTTVYALANE 66 Query: 78 LG 79 G Sbjct: 67 YG 68 >gi|6319449|ref|NP_009531.1| Pim1p [Saccharomyces cerevisiae S288c] gi|585414|sp|P36775|LONM_YEAST RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor gi|453236|emb|CAA52634.1| mitochondrial ATP-dependent protease [Saccharomyces cerevisiae] gi|536019|emb|CAA84841.1| PIM1 [Saccharomyces cerevisiae] gi|285810313|tpg|DAA07098.1| TPA: Pim1p [Saccharomyces cerevisiae S288c] Length = 1133 Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 34/208 (16%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S+E I + E+ G V+ + FI K + ++ FVGPPG+GKT++ Sbjct: 583 SKEQYSIPRAKKILDEDHYGMVDVKDRILEFIAVGKLLGKVDGKIICFVGPPGVGKTSIG 642 Query: 72 QVVARELGVN-FRSTSGPVI--------------AKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G + A G + L + ++ ++ IDEI Sbjct: 643 KSIARALNRKFFRFSVGGMTDVAEIKGHRRTYIGALPGRVVQALKKCQTQNPLILIDEID 702 Query: 116 RL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P + LD + + I+LS+ + + + Sbjct: 703 KIGHGGIHGDPSAALLEVLDPEQNNSFLD-------NYLDIPIDLSKVLFVCTANSLETI 755 Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL DR + I L Y ED I ++ Sbjct: 756 PRPLLDRMEV-IELTGYVAEDKVKIAEQ 782 >gi|317968672|ref|ZP_07970062.1| cell division protein FtsH [Synechococcus sp. CB0205] Length = 614 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 225 >gi|303328061|ref|ZP_07358500.1| ATP-dependent protease La [Desulfovibrio sp. 3_1_syn3] gi|302861887|gb|EFL84822.1| ATP-dependent protease La [Desulfovibrio sp. 3_1_syn3] Length = 814 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 110/252 (43%), Gaps = 44/252 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+LA+ VAR G +F R + G V +A G + L Sbjct: 355 LCFVGPPGVGKTSLAKSVARATGRDFIRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 414 Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 ++ + LF +DE+ +++ E+L P + +D + ++ +LS Sbjct: 415 RVKYNNPLFCLDEVDKMTSDYRGDPASALLEVLDPEQNNTFMDHYL-------DLEYDLS 467 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212 + I + + PL DR I I L+ Y +E K + R + L V + E Sbjct: 468 KVFFITTANSLHTIPVPLLDRMEI-IELSSY-LETEKRHIAR-SFLLPRQVEEHGLKE-- 522 Query: 213 MRSRGTPRIA-GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271 G RI+ LL +R + A + + REI AAL R ++ D DL I Sbjct: 523 ----GNIRISENALLEIIRGYTREAGVRNLEREI--AALCRKTAIRLVEDD-DLDKCVSI 575 Query: 272 ARNFGGGPVGIE 283 +R G +G++ Sbjct: 576 SRQSLQGFLGVK 587 >gi|224535858|ref|ZP_03676397.1| hypothetical protein BACCELL_00722 [Bacteroides cellulosilyticus DSM 14838] gi|224522581|gb|EEF91686.1| hypothetical protein BACCELL_00722 [Bacteroides cellulosilyticus DSM 14838] Length = 742 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69 ++ + L R + GQ EA + ++ +KA + L +LFVGP G+GKT Sbjct: 438 EDTTSLETLHARISAKIYGQEEAVRQVVEAVQMSKAGLLDENKPLASLLFVGPTGVGKTE 497 Query: 70 LAQVVARELGVNFR 83 +A+V+A ELG++ + Sbjct: 498 VAKVLASELGISLQ 511 >gi|218961502|ref|YP_001741277.1| DNA polymerase III, gamma/tau subunits (fragment) [Candidatus Cloacamonas acidaminovorans] gi|167730159|emb|CAO81071.1| DNA polymerase III, gamma/tau subunits (fragment) [Candidatus Cloacamonas acidaminovorans] Length = 533 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 11/111 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ +E Q ++ +++A A LF GP G+GKT+LA+++A+ L Sbjct: 11 RPQNFKEVYAQ----EHITEILQSAIATNRIAHAYLFTGPRGVGKTSLARILAKSLNCVN 66 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-----IVEEILYPA 128 T+ P A + L +T DV+ ID S+ + E+LYPA Sbjct: 67 GPTTTPCNACSNCLE--ITAGTSPDVIEIDGASNTSVDDIRELQRELLYPA 115 >gi|270307761|ref|YP_003329819.1| ATP-dependent metalloprotease, cell division protein [Dehalococcoides sp. VS] gi|270153653|gb|ACZ61491.1| ATP-dependent metalloprotease, cell division protein [Dehalococcoides sp. VS] Length = 499 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L +GPPG GKT LA+ +A E GV F S SG + G A+ + +L D+ + Sbjct: 86 ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCI 145 Query: 109 LFIDEI 114 +FIDEI Sbjct: 146 IFIDEI 151 >gi|37521486|ref|NP_924863.1| cell division protein [Gloeobacter violaceus PCC 7421] gi|35212483|dbj|BAC89858.1| cell division protein [Gloeobacter violaceus PCC 7421] Length = 611 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 224 >gi|328768110|gb|EGF78157.1| hypothetical protein BATDEDRAFT_13267 [Batrachochytrium dendrobatidis JAM81] Length = 611 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 376 VLLYGPPGCGKTLLAKAVANESHCNFISIKGP 407 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E GV F S + PVI +G+ + + + + Sbjct: 56 ILLHGPPGCGKTMLARAIAGEAGVPFISIAAPVIVSGMSGESEKKIREVFEEAKSLAPCI 115 Query: 109 LFIDEI 114 LFIDEI Sbjct: 116 LFIDEI 121 >gi|312281735|dbj|BAJ33733.1| unnamed protein product [Thellungiella halophila] Length = 717 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 263 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 293 >gi|290976655|ref|XP_002671055.1| predicted protein [Naegleria gruberi] gi|284084620|gb|EFC38311.1| predicted protein [Naegleria gruberi] Length = 883 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ ++ + G NF S GP Sbjct: 589 VLLYGPPGCGKTLLAKAISNDSGANFISIKGP 620 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 +L GPPG GKT LA +A EL + F S P I +G+ A + + + Sbjct: 262 ILLHGPPGCGKTMLANAIAGELQIPFLKVSAPEIVSGMSGESEAKIRQIFRDAISNAPSI 321 Query: 109 LFIDEI 114 +FIDEI Sbjct: 322 IFIDEI 327 >gi|270156950|ref|ZP_06185607.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella longbeachae D-4968] gi|289164626|ref|YP_003454764.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella longbeachae NSW150] gi|269988975|gb|EEZ95229.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella longbeachae D-4968] gi|288857799|emb|CBJ11643.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella longbeachae NSW150] Length = 424 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 28/134 (20%) Query: 13 SQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE---------ALDHVL 58 + E+A++ L P+ + F GQ A L V + R + ++L Sbjct: 55 THEEAEVQLPSPQEISGFLDEYVIGQAHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNIL 114 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV--- 108 +GP G GKT LAQ +AR L V F + +AG + + N+ D DV Sbjct: 115 LIGPTGSGKTLLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKA 174 Query: 109 ----LFIDEIHRLS 118 ++IDEI ++S Sbjct: 175 QHGIVYIDEIDKIS 188 >gi|225375862|ref|ZP_03753083.1| hypothetical protein ROSEINA2194_01494 [Roseburia inulinivorans DSM 16841] gi|225212297|gb|EEG94651.1| hypothetical protein ROSEINA2194_01494 [Roseburia inulinivorans DSM 16841] Length = 598 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 187 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 217 >gi|224157403|ref|XP_002195915.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 6, partial [Taeniopygia guttata] Length = 165 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED D+S E G E L+ IE E V L Sbjct: 32 LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 85 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 86 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 145 Query: 111 IDEI 114 +DEI Sbjct: 146 MDEI 149 >gi|198425284|ref|XP_002119398.1| PREDICTED: similar to Replication factor C (activator 1) 3 [Ciona intestinalis] Length = 355 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 40/229 (17%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---G 79 RP++L + +E NLK +E H+LF GPPG GK T + RE+ G Sbjct: 9 RPKSLNKLDYHLEQAENLKKLVENGD-----FPHLLFYGPPGAGKKTRIMCLLREVYGSG 63 Query: 80 V--------NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 V NF + S K ++AAL +N +V D ++V+E++ + Sbjct: 64 VEKLRIEKHNFVTPS----KKKLEIAALSSNYHI-EVTPSDAGMHDRVVVQELIKTVAQS 118 Query: 132 FQL----------------DLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDR 173 QL D + + A R+++ +S LI + +Q R Sbjct: 119 HQLESKAQKRFKVIVLTEVDRLTRDAQHALRRTMEKYMSTCRLILYCNSTSKVIPAIQSR 178 Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 + +R+ I+D+ I+ K G + E A IA+ S+ R A Sbjct: 179 -CLAVRVAAPSIDDVIKILTSVGKKEGHPIPQELARRIAVASKRNLRRA 226 >gi|254416578|ref|ZP_05030329.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] gi|196176544|gb|EDX71557.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] Length = 629 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 199 VLLVGPPGTGKTMLAKAIAGEAGVPFFSISG 229 >gi|167957354|ref|ZP_02544428.1| hypothetical protein cdiviTM7_01719 [candidate division TM7 single-cell isolate TM7c] Length = 373 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 21/121 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDL------------AALLTNL 103 V G G GK+T A+ +A EL ++FRS S GP +KA DL A Sbjct: 6 VWLYGEAGSGKSTAAEQMADELDLSFRSISLGPSTSKA-DLMGYRDATGEYRSTAYRETY 64 Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 ED V DEI V IL ++ + Q GE P R + + +RF IAA + Sbjct: 65 EDGGVFLFDEIDNAHPSVLTILNNSIANNQ-----GEFPDKRISRHDDTRF--IAAANTI 117 Query: 164 G 164 G Sbjct: 118 G 118 >gi|73544229|ref|XP_848009.1| replication factor C, subunit 4 [Leishmania major strain Friedlin] gi|321438363|emb|CBZ12115.1| putative replication factor C, subunit 4 [Leishmania major strain Friedlin] Length = 360 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+T+ + G EA S L+V A+ L ++L GPPG GKTT +AR+L Sbjct: 13 RPQTVVDIVGNTEAISRLQVI-----AKQGNLPNLLLCGPPGTGKTTSMLCLARDL 63 >gi|12045316|ref|NP_073127.1| ATP-dependent metalloprotease FtsH [Mycoplasma genitalium G37] gi|255660039|ref|ZP_05405448.1| ATP-dependent metalloprotease FtsH [Mycoplasma genitalium G37] gi|1346047|sp|P47695|FTSH_MYCGE RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|3845051|gb|AAC72477.1| ATP-dependent metalloprotease FtsH [Mycoplasma genitalium G37] gi|166078722|gb|ABY79340.1| ATP-dependent metalloprotease FtsH [synthetic Mycoplasma genitalium JCVI-1.0] Length = 702 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 26/211 (12%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 +E LK ++ A+ A + V+ GPPG GKT LA+ VA E GV F ++G Sbjct: 244 LEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDM 303 Query: 93 -AGDLAALLTNLEDRD------VLFIDEIHRLSII---VEEILYPAMEDFQLDLMVGE-- 140 G A + +L ++ ++FIDEI + VE Y +E L+ ++ E Sbjct: 304 LVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQ-TLNQLLAEMD 362 Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKL 198 G ++R+ + ++AAT R+ +L + L RF I++N +I++ + I++ A+ Sbjct: 363 GFTSRTGVV------VMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILKVHAEN 416 Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 L+ + + ++A R TP +G L V Sbjct: 417 KNLS-SKISLLDVAKR---TPGFSGAQLENV 443 >gi|6324000|ref|NP_014070.1| Pex6p [Saccharomyces cerevisiae S288c] gi|464348|sp|P33760|PEX6_YEAST RecName: Full=Peroxisomal ATPase PEX6; AltName: Full=Peroxin-6; AltName: Full=Peroxisomal assembly protein 8; AltName: Full=Peroxisome biosynthesis protein PAS8 gi|393287|gb|AAA16574.1| PAS8 [Saccharomyces cerevisiae] gi|633657|emb|CAA86369.1| PAS8 gene [Saccharomyces cerevisiae] gi|1302449|emb|CAA96261.1| PAS8 [Saccharomyces cerevisiae] gi|285814340|tpg|DAA10234.1| TPA: Pex6p [Saccharomyces cerevisiae S288c] Length = 1030 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F K R+ +LF GPPG GKT +A+ +A +NF S GP Sbjct: 756 ELFTSGMKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 799 >gi|88807968|ref|ZP_01123479.1| cell division protein FtsH2 [Synechococcus sp. WH 7805] gi|88788007|gb|EAR19163.1| cell division protein FtsH2 [Synechococcus sp. WH 7805] Length = 616 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227 >gi|313897563|ref|ZP_07831105.1| endopeptidase La [Clostridium sp. HGF2] gi|312957515|gb|EFR39141.1| endopeptidase La [Clostridium sp. HGF2] Length = 774 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 85/207 (41%), Gaps = 44/207 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA---GDLAALLTNLEDR------ 106 + VGPPG+GKT+LA+ VAR L F S G V ++ G L ++ R Sbjct: 353 ICLVGPPGVGKTSLAKSVARALDRKFVKISLGGVKDESEIRGHRRTYLGSMPGRFIQAMK 412 Query: 107 ------DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V IDEI +++ + E+L P D + E +LS Sbjct: 413 KAGTVNPVFLIDEIDKMASDYKGDPASAMLEVLDPEQNSLFSDHYIEE-------PYDLS 465 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203 + IA + + N L+DR I ++ E+E + K I + G K + L + Sbjct: 466 KVLFIATANYLENIPNALRDRLEIIELSSYTELEKIEIAKRHLVPKQIKENGLKTSQLKI 525 Query: 204 TDEAACEIAMRSRGTPRIAG-RLLRRV 229 DE I+ R R +G R L RV Sbjct: 526 DDEM---ISFLIRYYTRESGVRQLERV 549 >gi|289643070|ref|ZP_06475201.1| Shikimate kinase [Frankia symbiont of Datisca glomerata] gi|289507114|gb|EFD28082.1| Shikimate kinase [Frankia symbiont of Datisca glomerata] Length = 229 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 27/38 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 V+ VGPPG GKTT+ +++AR L V FR T V A+AG Sbjct: 45 VVLVGPPGSGKTTVGRLLARRLDVAFRDTDVDVEARAG 82 >gi|269218252|ref|ZP_06162106.1| putative cell division protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269212380|gb|EEZ78720.1| putative cell division protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 1002 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 34/68 (50%), Gaps = 7/68 (10%) Query: 26 TLEEFTGQVEACSNLKVFIE--AAKARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78 T + G+ EA + L+ E A R AL VL GPPG GKT LA+ VA E Sbjct: 240 TFNDVAGEDEAVAELREITEFLTAPERFHALGAEIPRGVLLYGPPGTGKTLLARAVAGEA 299 Query: 79 GVNFRSTS 86 GV F S S Sbjct: 300 GVPFYSIS 307 >gi|242398512|ref|YP_002993936.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM 739] gi|242264905|gb|ACS89587.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM 739] Length = 810 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G +A ++ IE E + VL GPPG GKT LA+ VA E Sbjct: 180 TYEDIGGLKDAIQKIREMIELPLKHPEVFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239 Query: 78 LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLS 118 +F + +GP I G+ L + E+ ++FIDEI ++ Sbjct: 240 ANAHFIAINGPEIMSKYYGESEERLREVFKESEENAPSIIFIDEIDAIA 288 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 20/34 (58%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E NF GP + Sbjct: 555 ILLYGPPGTGKTLLAKAVATESEANFIGIRGPEV 588 >gi|198433804|ref|XP_002132122.1| PREDICTED: similar to YME1-like 1 [Ciona intestinalis] Length = 702 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 +L +GPPG GKT LA+ VA E GV F T+G V A + L N + + Sbjct: 271 ILLIGPPGTGKTLLAKAVAGESGVPFFYTAGSEFDEMFVGIGASRIRKLFENARKQAPSI 330 Query: 109 LFIDEI 114 +FIDEI Sbjct: 331 IFIDEI 336 >gi|123505671|ref|XP_001329029.1| ATPase, AAA family protein [Trichomonas vaginalis G3] gi|121911979|gb|EAY16806.1| ATPase, AAA family protein [Trichomonas vaginalis G3] Length = 325 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 7/65 (10%) Query: 23 RPRTLEEFTGQVEAC-SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP L++ EAC S +K FI+ L H+ F GPPG GKTT A ++ +L N Sbjct: 14 RPSKLDDVVSH-EACISTIKKFIDK-----NCLPHLCFHGPPGTGKTTTAIAISHQLYGN 67 Query: 82 FRSTS 86 S S Sbjct: 68 DTSMS 72 >gi|3820564|gb|AAC84037.1| ATP-dependent zinc metallopeptidase FtsH [Heliobacillus mobilis] Length = 601 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE V+ + K F+E A+ VL GPPG GKT LA+ VA E GV F S SG Sbjct: 168 EELQEVVDFLKHPKKFVELG---AKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISG 224 >gi|322828516|gb|EFZ32279.1| replication factor C, subunit 4, putative [Trypanosoma cruzi] Length = 340 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+++E+ G +A S L+V ++ L ++L GPPG GKTT +AR L Sbjct: 13 RPKSMEDIVGNADAVSRLRVI-----SKEGNLPNLLLCGPPGTGKTTSVLCLARTL 63 >gi|313114238|ref|ZP_07799786.1| putative ATP-dependent metalloprotease [Faecalibacterium cf. prausnitzii KLE1255] gi|310623432|gb|EFQ06839.1| putative ATP-dependent metalloprotease [Faecalibacterium cf. prausnitzii KLE1255] Length = 612 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 15/101 (14%) Query: 29 EFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVN 81 +F G+ EA NL+ ++ + E++ +L VGPPG GKT LA+ VA E V Sbjct: 168 DFAGEDEAKENLQEIVDYLHDPGKYESIGASMPKGILLVGPPGTGKTMLAKAVAGESNVP 227 Query: 82 FRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 F S SG + A + L +++ ++FIDEI Sbjct: 228 FFSISGSEFVEMFVGMGASKVRDLFRQAKEKAPCIVFIDEI 268 >gi|307108040|gb|EFN56281.1| hypothetical protein CHLNCDRAFT_145161 [Chlorella variabilis] Length = 328 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPRTL++ + + ++ ++ + L H+LF GPPG GKT+ +ARE+ Sbjct: 15 RPRTLDQISAHTDIIDTIRKLLDENQ-----LPHLLFYGPPGTGKTSTILAIAREI 65 >gi|307265244|ref|ZP_07546802.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii Rt8.B1] gi|306919688|gb|EFN49904.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii Rt8.B1] Length = 510 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 16/121 (13%) Query: 10 RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61 N+++ D S + T ++ G E LKV I+ K A+ +LF G Sbjct: 65 NNITEAKEDTSHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKVPKGILFYG 124 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DVLFIDE 113 PPG GKT LA +A E F S SG + A + AL + ++FIDE Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDE 184 Query: 114 I 114 I Sbjct: 185 I 185 >gi|293375861|ref|ZP_06622127.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909] gi|325841821|ref|ZP_08167481.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1] gi|292645506|gb|EFF63550.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909] gi|325489851|gb|EGC92203.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1] Length = 677 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 222 ILLVGPPGTGKTLLARAVAGEAGVPFYSISG 252 >gi|221633538|ref|YP_002522764.1| ATP-dependent protease La [Thermomicrobium roseum DSM 5159] gi|221155788|gb|ACM04915.1| ATP-dependent protease La [Thermomicrobium roseum DSM 5159] Length = 772 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 42/189 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+LA+ +A LG F + S G V +A G + L Sbjct: 341 LCFVGPPGVGKTSLARSIAEALGRRFVTVSLGGVRDEAEIRGHRRTYLGAYPGRIVEALR 400 Query: 102 NLEDRD-VLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R+ V+ +DE+ +L+ + E+L P +D + V ++LS Sbjct: 401 RAGTRNPVILLDELDKLATDYRGDPAAALLEVLDPEQNKQFVDHYL-------DVPVDLS 453 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202 IA + L PL+DR I L Y E+ + I +R G T + Sbjct: 454 GVLFIATANSLAPLPRPLRDRLEA-IVLEGYSEEEKREIGKRYLLPRQLAAHGLPETAVE 512 Query: 203 VTDEAACEI 211 +TD A E+ Sbjct: 513 LTDSAWQEL 521 >gi|167754507|ref|ZP_02426634.1| hypothetical protein CLORAM_00008 [Clostridium ramosum DSM 1402] gi|167705339|gb|EDS19918.1| hypothetical protein CLORAM_00008 [Clostridium ramosum DSM 1402] Length = 413 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 11/114 (9%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP+ L++ GQ V + L F++ + + ++ G PG GKTT+A +A +L Sbjct: 1 MRPQNLKDIIGQQHLVGPNAILTKFVQKSHPFS-----IILYGSPGCGKTTIAMALANDL 55 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF--IDEIHRLSIIVEEILYPAME 130 + +R + K ++ A++ + LF IDE+HRL+ ++ L ME Sbjct: 56 DIPYRIFNASTGNKK-EMDAIIEEAKLSGSLFVIIDEVHRLNKARQDDLLSHME 108 >gi|156543233|ref|XP_001606546.1| PREDICTED: similar to ENSANGP00000022333 [Nasonia vitripennis] Length = 705 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG GKT LA+ VA E GV F +GP Sbjct: 327 VLLVGPPGTGKTLLARAVAGEAGVPFFYAAGP 358 >gi|126465619|ref|YP_001040728.1| AAA family ATPase, CDC48 subfamily protein [Staphylothermus marinus F1] gi|126014442|gb|ABN69820.1| AAA family ATPase, CDC48 subfamily [Staphylothermus marinus F1] Length = 738 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 500 ILLYGPPGTGKTLLAKAVATESGANFIAVRGPEI 533 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 8/77 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E F + +GP +I+K G+ L + ++ + Sbjct: 227 ILLYGPPGTGKTLLAKAVANEAEAYFIAINGPEIISKFYGESEQRLREIFEQAKKNAPAI 286 Query: 109 LFIDEIHRLSIIVEEIL 125 +FIDEI ++ +E++ Sbjct: 287 IFIDEIDAIAPKRDEVM 303 >gi|189425579|ref|YP_001952756.1| ATP-dependent metalloprotease FtsH [Geobacter lovleyi SZ] gi|189421838|gb|ACD96236.1| ATP-dependent metalloprotease FtsH [Geobacter lovleyi SZ] Length = 635 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224 >gi|160898087|ref|YP_001563669.1| ATP-dependent protease ATP-binding subunit ClpX [Delftia acidovorans SPH-1] gi|238687212|sp|A9C1U9|CLPX_DELAS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|160363671|gb|ABX35284.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Delftia acidovorans SPH-1] Length = 420 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 113 AKSNILLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCE 172 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 173 YDVERAQRGIVYIDEIDKIS 192 >gi|78185610|ref|YP_378044.1| peptidase M41, FtsH [Synechococcus sp. CC9902] gi|78169904|gb|ABB27001.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Synechococcus sp. CC9902] Length = 617 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228 >gi|32474299|ref|NP_867293.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica SH 1] gi|32444837|emb|CAD74839.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica SH 1] Length = 676 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 105/260 (40%), Gaps = 45/260 (17%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPR + GQ L+ IE ++ + H LF G G+GKT+ A++ A+ L Sbjct: 45 RPRDFTQLVGQDHVARALQGAIETSR-----VGHAYLFTGARGVGKTSTARIFAKALNHP 99 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 T+ P D+A + + ED DV+ ID I +EI L VG Sbjct: 100 DGPTANP--DSESDVAQAIDSGEDVDVIEIDGASNRGI--DEIR-------SLRANVGVR 148 Query: 142 PSARSVKI----NLSRFTLIAATTRVGLLTNPLQ---------DRFGIPI-------RLN 181 PS KI + T A + L P + D IPI R + Sbjct: 149 PSRSRYKIYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFD 208 Query: 182 FYEIEDLKTIVQRGAKLTGL---AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE---- 234 F +E K IVQR ++ V DEA +A R+ G+ R + LL +V F++ Sbjct: 209 FAPVESDK-IVQRLREIVEAEDNTVEDEALELLARRAAGSMRDSQSLLEQVLSFSDGHLT 267 Query: 235 VAHAKTITREIADAALLRLA 254 H T+ D L RLA Sbjct: 268 ADHVHTMLGTADDQRLHRLA 287 >gi|71654812|ref|XP_816018.1| replication factor C, subunit 4 [Trypanosoma cruzi strain CL Brener] gi|70881118|gb|EAN94167.1| replication factor C, subunit 4, putative [Trypanosoma cruzi] Length = 340 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+++E+ G +A S L+V ++ L ++L GPPG GKTT +AR L Sbjct: 13 RPKSMEDIVGNADAVSRLRVI-----SKEGNLPNLLLCGPPGTGKTTSVLCLARTL 63 >gi|303388375|ref|XP_003072422.1| DNA replication factor C small subunit [Encephalitozoon intestinalis ATCC 50506] gi|303301562|gb|ADM11062.1| DNA replication factor C small subunit [Encephalitozoon intestinalis ATCC 50506] Length = 284 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 8/110 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA-RELGVN 81 RP++++ F G +LK + + R ++L GPPG GKTT A ++A R+L +N Sbjct: 8 RPKSVDTFEGP----EHLKSILRNSSERGHP--NLLLYGPPGTGKTTFAHLLATRKLELN 61 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 G + + + + LE + +DE L+ + L +ED Sbjct: 62 ASDERGISVIRE-KIKVYASTLEKDKTVILDECENLTSDAQHCLRRVIED 110 >gi|300865379|ref|ZP_07110188.1| FtsH-2 peptidase [Oscillatoria sp. PCC 6506] gi|300336614|emb|CBN55338.1| FtsH-2 peptidase [Oscillatoria sp. PCC 6506] Length = 623 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 204 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234 >gi|291335263|gb|ADD94882.1| FtsH peptidase [uncultured marine bacterium MedDCM-OCT-S09-C166] Length = 616 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227 >gi|316935669|ref|YP_004110651.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris DX-1] gi|315603383|gb|ADU45918.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris DX-1] Length = 617 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 +L VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 193 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARAKAPAI 252 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 253 IFIDELDAL 261 >gi|317153550|ref|YP_004121598.1| ATP-dependent protease La [Desulfovibrio aespoeensis Aspo-2] gi|316943801|gb|ADU62852.1| ATP-dependent protease La [Desulfovibrio aespoeensis Aspo-2] Length = 821 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 50/193 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT++A+ +AR + F R + G V +A G + L Sbjct: 368 LCFVGPPGVGKTSIAKSIARSMDREFLRLSLGGVRDEAEIRGHRRTYVGAMPGKIIQSLK 427 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ + V+ +DE+ ++ S + E+L P A D LDL Sbjct: 428 RVKHNNPVICLDEVDKMSADFRGDPSAALLEVLDPEQNYAFNDHYLDL-----------D 476 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198 +LS+ I + + PLQDR I IRL Y E E + K + Q G K Sbjct: 477 YDLSKVFFITTANNLDGIPLPLQDRMEI-IRLPGYLENEKVEIAKGFLVPKQLEQHGLKT 535 Query: 199 TGLAVTDEAACEI 211 + +D A +I Sbjct: 536 ENIKFSDNAILDI 548 >gi|225850666|ref|YP_002730900.1| ATPase, AAA family [Persephonella marina EX-H1] gi|225646314|gb|ACO04500.1| ATPase, AAA family [Persephonella marina EX-H1] Length = 309 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 24/159 (15%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTNLED------- 105 H+L PGLGKTTLA +A+ LG+ F + TS + L+ NLE Sbjct: 38 HLLVEDLPGLGKTTLAIGIAKTLGLQFGRIQCTSDLLPTDITGLSIYNKNLEKFEFHPGP 97 Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 +++ +DEI+R + + L AM + Q+ L EG + + K F +IA V Sbjct: 98 IFNNIVLVDEINRATPKTQSALLEAMAEKQVTL---EGETYKLPK----PFFVIATQNPV 150 Query: 164 GLL-TNPL----QDRFGIPIRLNFYEIEDLKTIVQRGAK 197 T PL DRF + I + + E K I++ G++ Sbjct: 151 EQFGTFPLPESQMDRFMMKISIGYPTREAEKEILKGGSR 189 >gi|307153545|ref|YP_003888929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] gi|306983773|gb|ADN15654.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] Length = 624 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA + L +E K R +A+ VL VGPPG GKT LA+ VA E Sbjct: 165 TFEDVAGVEEAKTELAEIVEFLKNPQRYKAIGARIPRGVLLVGPPGTGKTLLAKAVAGEA 224 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 V F S SG + G AA + +L ++ ++FIDE+ Sbjct: 225 KVPFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCIIFIDEL 268 >gi|190409291|gb|EDV12556.1| AAA ATPase [Saccharomyces cerevisiae RM11-1a] Length = 1030 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F K R+ +LF GPPG GKT +A+ +A +NF S GP Sbjct: 756 ELFTSGMKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 799 >gi|190344505|gb|EDK36189.2| hypothetical protein PGUG_00287 [Meyerozyma guilliermondii ATCC 6260] Length = 380 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108 VLF GPPG GKT LA+ +A+E G F S I K D L N + Sbjct: 162 VLFYGPPGCGKTMLAKAIAKESGAFFLSVRMSTIMDKWYGESNKIVDAIFSLANKLQPCI 221 Query: 109 LFIDEI 114 +FIDEI Sbjct: 222 IFIDEI 227 >gi|116072106|ref|ZP_01469374.1| Peptidase M41, FtsH [Synechococcus sp. BL107] gi|116065729|gb|EAU71487.1| Peptidase M41, FtsH [Synechococcus sp. BL107] Length = 617 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228 >gi|327438072|dbj|BAK14437.1| ATP-dependent Zn protease [Solibacillus silvestris StLB046] Length = 679 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 205 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 264 Query: 109 LFIDEI 114 +FIDEI Sbjct: 265 IFIDEI 270 >gi|323335955|gb|EGA77232.1| Pex6p [Saccharomyces cerevisiae Vin13] gi|323346935|gb|EGA81213.1| Pex6p [Saccharomyces cerevisiae Lalvin QA23] Length = 1030 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F K R+ +LF GPPG GKT +A+ +A +NF S GP Sbjct: 756 ELFTSGMKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 799 >gi|322701087|gb|EFY92838.1| peroxin-1, putative [Metarhizium acridum CQMa 102] Length = 1217 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 77/183 (42%), Gaps = 35/183 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L G PG GKT LA VA E G+NF S GP I G + +L DR V Sbjct: 871 LLLYGYPGCGKTLLASAVAGECGLNFISVKGPEILNKYIGASEKSVRDLFDRAQAAKPCV 930 Query: 109 LFIDEI--------HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160 LF DE H + + + ++ + Q+D G LS ++AAT Sbjct: 931 LFFDEFDSIAPKRGHDSTGVTDRVVNQLLT--QMDGAEG-----------LSGVYVLAAT 977 Query: 161 TRVGLLTNPL--QDRFGIPIRLNFYEIED----LKTIVQRGAKLTGLAVTDEAACEIAMR 214 +R L+ L R + + +ED +K + Q+ + L +D+ EIA R Sbjct: 978 SRPDLIDPALLRPGRLDKSLLCDLPSLEDRLDIIKALFQKVRLSSELTDSDDGLTEIARR 1037 Query: 215 SRG 217 + G Sbjct: 1038 TDG 1040 >gi|330921788|ref|XP_003299563.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1] gi|311326698|gb|EFQ92339.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1] Length = 418 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL E T Q L ++++ L H+LF GPPG GKT+ +A+EL Sbjct: 40 RPKTLSEVTAQDNTIQILSRTMQSSN-----LPHMLFYGPPGTGKTSTILALAKEL 90 >gi|297526098|ref|YP_003668122.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM 12710] gi|297255014|gb|ADI31223.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM 12710] Length = 738 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E G NF + GP I Sbjct: 500 ILLYGPPGTGKTLLAKAVATESGANFIAVRGPEI 533 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 8/77 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E F + +GP +I+K G+ L + ++ + Sbjct: 227 ILLYGPPGTGKTLLAKAVANEAEAYFIAINGPEIISKFYGESEQRLREIFEQAKKNAPAI 286 Query: 109 LFIDEIHRLSIIVEEIL 125 +FIDEI ++ +E++ Sbjct: 287 IFIDEIDAIAPKRDEVM 303 >gi|256269459|gb|EEU04750.1| Pex6p [Saccharomyces cerevisiae JAY291] gi|259149044|emb|CAY82285.1| Pex6p [Saccharomyces cerevisiae EC1118] Length = 1030 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F K R+ +LF GPPG GKT +A+ +A +NF S GP Sbjct: 756 ELFTSGMKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 799 >gi|302878842|ref|YP_003847406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gallionella capsiferriformans ES-2] gi|302581631|gb|ADL55642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gallionella capsiferriformans ES-2] Length = 416 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD------------LAALL 100 A ++L VGP G GKT LAQ +AR L V F + +AG L A Sbjct: 109 AKSNILLVGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQACD 168 Query: 101 TNLE--DRDVLFIDEIHRLS 118 N+E R ++++DEI ++S Sbjct: 169 YNVEKAQRGIIYVDEIDKIS 188 >gi|224031915|gb|ACN35033.1| unknown [Zea mays] Length = 463 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 8/96 (8%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 L VGPPG GKT LA+ VA E GV F S + + G A+ + +L ++ + Sbjct: 57 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCI 116 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144 +FIDEI + + + L + +D+ V EG SA Sbjct: 117 VFIDEIDAVVVPNDPDLIDILATNGVDISVSEGESA 152 >gi|146185105|ref|XP_001030952.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena thermophila] gi|146142708|gb|EAR83289.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena thermophila SB210] Length = 741 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE T V+ N K + +A A+ +L VGPPG GKT LA+ +A E G +F SG Sbjct: 317 EELTELVDYLKNPKKYQDAG---AKLPKGILLVGPPGTGKTLLARALAGEAGCSFYYKSG 373 >gi|145353765|ref|XP_001421175.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|145357141|ref|XP_001422780.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|300681034|sp|A4S6Y4|LONM_OSTLU RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor gi|144581411|gb|ABO99468.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144583024|gb|ABP01139.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 936 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 46/222 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL------------AALLTNLE 104 + VGPPG+GKT++ Q +A+ LG F S ++ ++ L+ L+ Sbjct: 503 ITMVGPPGVGKTSIGQSIAKALGRKFYRFSVGGMSDVAEIKGHRRTYVGAMPGKLIQCLK 562 Query: 105 D----RDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V+ IDEI +L + + E+L P LD + V ++LS Sbjct: 563 STGVCNPVVLIDEIDKLGRGYQGDPASALLELLDPEQNGTFLDHYL-------DVPVDLS 615 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY----EIEDLKTIVQRGAK-LTGLAVTDEA 207 + + + + PL DR + +RL+ Y +++ +T +++ A+ +GL+ D + Sbjct: 616 KVLFVCTANVLDTIPGPLLDRMEV-VRLSGYITDEKVQIARTYLEKAAREKSGLSDVDAS 674 Query: 208 ACEIAM--------RSRGTPRIAGRLLRRVRDFA-EVAHAKT 240 + AM R G + L + R A +VA AK+ Sbjct: 675 ITDAAMGKLIGDYCREAGVRNLQKHLEKVYRKIALKVARAKS 716 >gi|83592886|ref|YP_426638.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodospirillum rubrum ATCC 11170] gi|123739541|sp|Q2RU44|CLPX_RHORT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|83575800|gb|ABC22351.1| ClpX, ATPase regulatory subunit [Rhodospirillum rubrum ATCC 11170] Length = 422 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|162459318|ref|NP_001105903.1| lon protease homolog 2, peroxisomal precursor [Zea mays] gi|3914005|sp|P93647|LONP2_MAIZE RecName: Full=Lon protease homolog 2, peroxisomal gi|1816586|gb|AAC50011.1| LON1 protease [Zea mays] Length = 885 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 47/231 (20%) Query: 10 RNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGK 67 + VS+E + D+ + + ++ G + + ++ K + +A VL FVGPPG+GK Sbjct: 356 QKVSEERELDLRVAKESLDQDHYGLTKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGK 415 Query: 68 TTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR-----DVLFI 111 T+LA +A+ L F R + G V +A G + L + R V+ + Sbjct: 416 TSLASSIAKALNRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVSVSNPVMLL 475 Query: 112 DEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 DEI + V E+L P A D L+ V +LS+ +A Sbjct: 476 DEIDKTGSDVRGDPASALLEVLDPEQNKAFNDHYLN-----------VPFDLSKVIFVAT 524 Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTD 205 R+ + PL DR I I L Y E+ +K ++ R + GL+ T+ Sbjct: 525 ANRMQPIPPPLLDRMEI-IELPGYTPEEKLKIAMKHLIPRVLEQHGLSTTN 574 >gi|332970862|gb|EGK09840.1| ATP-dependent Clp protease ATP-binding subunit [Kingella kingae ATCC 23330] Length = 422 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +VL +GP G GKT + Q +AR L V F + +AG D+ +++T L Sbjct: 114 NVLMIGPTGSGKTYMVQSLARHLNVPFAMADATTLTEAGYVGEDVESIVTKLLGNCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 + +++IDEI ++S Sbjct: 174 EKAQKGIIYIDEIDKIS 190 >gi|320101637|ref|YP_004177228.1| membrane protease FtsH catalytic subunit [Isosphaera pallida ATCC 43644] gi|319748919|gb|ADV60679.1| membrane protease FtsH catalytic subunit [Isosphaera pallida ATCC 43644] Length = 712 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F S SG V A + + ++ + Sbjct: 258 VLLVGPPGSGKTLLARAVAGEAGVPFFSISGSEFIQMFVGVGASRVRDMFKTAKENSPCI 317 Query: 109 LFIDEI 114 LFIDEI Sbjct: 318 LFIDEI 323 >gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter marburgensis str. Marburg] gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter marburgensis str. Marburg] Length = 317 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81 RP+ L++ GQ LK ++E ++ +++F GP G+GKTT A +ARE LG Sbjct: 10 RPQKLDDIVGQEHIIPRLKRYVEE-----RSMPNLMFTGPAGVGKTTTALALAREILGEY 64 Query: 82 FRST 85 +R Sbjct: 65 WRQN 68 >gi|296242479|ref|YP_003649966.1| ATPase [Thermosphaera aggregans DSM 11486] gi|296095063|gb|ADG91014.1| ATPase associated with various cellular activities AAA_3 [Thermosphaera aggregans DSM 11486] Length = 318 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 38/222 (17%) Query: 44 IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-PVIAKAGDLAALLTN 102 ++ A A A H+L G PG GKT LA+ +A+ +G + G P I + L + Sbjct: 33 VKLAVATLFANGHLLIEGYPGTGKTLLAKALAKTIGGEYSRIQGHPDILPSDILGFHIYR 92 Query: 103 LED----------RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 LE ++L IDE++R+ + L AM+++Q+ + VK +L Sbjct: 93 LEGSKEFVRGPVFSNILLIDELNRIPTRSQSALLEAMQEYQVTI--------DGVKYSLP 144 Query: 153 R-FTLIAATTRVGLLTNPLQ------DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205 R F +I V L T Q DRF +K+ + + Sbjct: 145 RPFMVIGTQISVRLGTGVYQVMETLADRFA----------SSVKSYYNPIEEEEEIIAKS 194 Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 ++ E+ + TPR ++ +++ V +TI R IA Sbjct: 195 DSIIELPINQVVTPRELSLVISSIQNLVHV--DETIIRYIAS 234 >gi|237785949|ref|YP_002906654.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium kroppenstedtii DSM 44385] gi|259491254|sp|C4LJV6|CLPX_CORK4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|237758861|gb|ACR18111.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 422 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F T + +AG + + N+ Sbjct: 114 AKSNILMLGPTGSGKTYLAQTLARMLDVPFAMTDATSLTEAGYVGEDVENILLKLLQAAD 173 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 174 FDVDRAQRGIIYIDEVDKIS 193 >gi|271963125|ref|YP_003337321.1| hypothetical protein Sros_1585 [Streptosporangium roseum DSM 43021] gi|270506300|gb|ACZ84578.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 1726 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL 109 R + + +L + PPG GKTTL + VA LG+ F GP + G L L + D Sbjct: 1355 RTDQMGMLLLISPPGYGKTTLMEYVASRLGLIFVKVDGPAL---GHLVTSLDPAQAPDAT 1411 Query: 110 FIDEIHRLSIIVE 122 E+ ++S +E Sbjct: 1412 SRQEVEKISFALE 1424 >gi|159035922|ref|YP_001535175.1| DNA polymerase III, subunits gamma and tau [Salinispora arenicola CNS-205] gi|157914757|gb|ABV96184.1| DNA polymerase III, subunits gamma and tau [Salinispora arenicola CNS-205] Length = 834 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 8/92 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ L + + + L+H LF GP G GKT+ A+++AR L Sbjct: 10 RPRTFAEIIGQEHVTEPLSQALRSGR-----LNHAYLFSGPRGCGKTSSARILARSLNCE 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDR-DVLFID 112 T P G AL T+ DV+ ID Sbjct: 65 HGPTPEPC-GTCGSCRALATDGAGSIDVIEID 95 >gi|115374874|ref|ZP_01462147.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] gi|115368092|gb|EAU67054.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] Length = 400 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 29/133 (21%) Query: 15 EDADISLLRPRTL-----EEFTGQVEACSNLKVFIEAAKARAEAL----------DHVLF 59 +D I + RP + E GQ A L V + R E+ ++L Sbjct: 34 KDTKIRIPRPSEIKSILDEYVVGQDRAKKVLSVAVHNHYKRIESKVQMDDVELQKSNILL 93 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------ED 105 +GP G GKT LAQ +AR L V F + +AG D+ ++ NL Sbjct: 94 LGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQ 153 Query: 106 RDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 154 RGIVYIDEIDKIA 166 >gi|94266501|ref|ZP_01290191.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium MLMS-1] gi|93452888|gb|EAT03402.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium MLMS-1] Length = 827 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 21/26 (80%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF 82 + FVGPPG+GKT+L Q +AR +G NF Sbjct: 402 LCFVGPPGVGKTSLGQSIARSMGRNF 427 >gi|16120141|ref|NP_395729.1| cell division cycle protein [Halobacterium sp. NRC-1] gi|169237400|ref|YP_001690604.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] gi|10584255|gb|AAG20864.1| cell division cycle protein [Halobacterium sp. NRC-1] gi|167728627|emb|CAP15469.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] Length = 737 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 24/34 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ +F++ SGP I Sbjct: 230 VLLHGPPGTGKTLIAKAVANEIDAHFQTISGPEI 263 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 7/48 (14%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +V +E AK VL GPPG GKT LA+ VA E NF S GP Sbjct: 494 QVALEPAKG-------VLLYGPPGTGKTLLAKAVANEANSNFISIKGP 534 >gi|330939988|gb|EGH43188.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. pisi str. 1704B] Length = 127 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 6/69 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV 80 RPR+ E GQ LK I A + + L H LF G G+GKTT+A+++A+ L Sbjct: 10 WRPRSFREMVGQAHV---LKALISALDS--QRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64 Query: 81 NFRSTSGPV 89 TS P Sbjct: 65 ETGITSTPC 73 >gi|308322419|gb|ADO28347.1| 26S protease regulatory subunit s10b [Ictalurus furcatus] Length = 389 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 21/123 (17%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LF 59 L N+S ED I + E G E L+ IE E V L Sbjct: 118 LVYNMSHEDPGIV-----SYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLL 172 Query: 60 VGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLFI 111 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F+ Sbjct: 173 YGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFM 232 Query: 112 DEI 114 DEI Sbjct: 233 DEI 235 >gi|260833506|ref|XP_002611698.1| hypothetical protein BRAFLDRAFT_117082 [Branchiostoma floridae] gi|229297069|gb|EEN67708.1| hypothetical protein BRAFLDRAFT_117082 [Branchiostoma floridae] Length = 859 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 13/69 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKAGDLAALLTNLEDRDVLFIDEIH 115 VL GPPG GKT +A+V+A E+G F + +GP V++K ++FIDE+ Sbjct: 379 VLLFGPPGTGKTMVARVLAAEIGATFITINGPEVLSKT------------PSIIFIDELD 426 Query: 116 RLSIIVEEI 124 L E + Sbjct: 427 ALCPKRENV 435 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 15/32 (46%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG KT +A+ +A E G+NF + GP Sbjct: 630 ILMYGPPGCSKTLIARALATESGLNFIAVKGP 661 >gi|154272872|ref|XP_001537288.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150415800|gb|EDN11144.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 450 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 11/112 (9%) Query: 23 RPRTLEEFT---GQVE-ACSNLKVFIEAAKARAEA----LDHVLFVGPPGLGKTTLAQVV 74 R R+LE + GQ E C+++ F++A + A+ LF GPPG GKT+L Q + Sbjct: 275 RRRSLESISLAEGQKEEVCNDMCKFLKAQRVYAKTERPYRRGYLFSGPPGTGKTSLVQAL 334 Query: 75 ARELGVNFR--STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 A + G++ S +G + +L L ++L VL I++I I E++ Sbjct: 335 AGKYGLDIYMLSLTGQNMTDE-ELQWLCSHLPRHCVLLIEDIDSAGINREKM 385 >gi|27381285|ref|NP_772814.1| ATP-dependent protease LA [Bradyrhizobium japonicum USDA 110] gi|27354452|dbj|BAC51439.1| ATP-dependent protease LA [Bradyrhizobium japonicum USDA 110] Length = 796 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 35/173 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L Q +AR + F R + G V +A G++ + Sbjct: 366 LCFVGPPGVGKTSLGQSIARAMDRPFVRVSLGGVHDEAEIRGHRRTYIGALPGNIIQGIK 425 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R+ V+ +DEI ++ S + E+L P D +G V +LS Sbjct: 426 KAGSRNCVMMLDEIDKMGRGVQGDPSAAMLEVLDPEQNGTFRDNYLG-------VPFDLS 478 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGL 201 R IA + + PL DR + + E E L + +V+R + GL Sbjct: 479 RVVFIATANMLDQIPGPLLDRMELISLAGYTEDEKLEIAKRYLVRRQLEANGL 531 >gi|328876170|gb|EGG24533.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum] Length = 918 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 628 VLMYGPPGCGKTLLAKAVAAECQANFISVKGP 659 Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 +L GPPG GKT LA +A EL V S S P I +G+ A + L + + Sbjct: 293 ILLHGPPGCGKTLLANCIAGELKVPLISISAPEITSGMSGESEAKIRQLFASAVEQSPCI 352 Query: 109 LFIDEI 114 +FIDEI Sbjct: 353 VFIDEI 358 >gi|313207085|ref|YP_004046262.1| AAA ATPase [Riemerella anatipestifer DSM 15868] gi|312446401|gb|ADQ82756.1| AAA ATPase [Riemerella anatipestifer DSM 15868] gi|315022517|gb|EFT35544.1| ATPase [Riemerella anatipestifer RA-YM] gi|325335478|gb|ADZ11752.1| ATPase, AAA+ type, core [Riemerella anatipestifer RA-GD] Length = 1603 Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 26/44 (59%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 + R + + +L V PPG GKTTL + VA +G+ F +GP I Sbjct: 1236 QKRTDRMGMLLLVSPPGYGKTTLIEYVADRMGLVFMKINGPAIG 1279 >gi|242095208|ref|XP_002438094.1| hypothetical protein SORBIDRAFT_10g007950 [Sorghum bicolor] gi|241916317|gb|EER89461.1| hypothetical protein SORBIDRAFT_10g007950 [Sorghum bicolor] Length = 319 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E G NF S +G + GD L +L + Sbjct: 66 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKSLFSFASRLAPVI 125 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 126 IFVDEVDSL 134 >gi|227533051|ref|ZP_03963100.1| M41 family endopeptidase FtsH [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189452|gb|EEI69519.1| M41 family endopeptidase FtsH [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 715 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPSI 284 Query: 109 LFIDEI 114 +FIDEI Sbjct: 285 IFIDEI 290 >gi|160894379|ref|ZP_02075156.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50] gi|156864080|gb|EDO57511.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50] Length = 605 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 15/103 (14%) Query: 27 LEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVARELG 79 + G+ EA NL ++ A+ D VL VGPPG GKT LA+ VA E Sbjct: 164 FSDVAGEDEAKENLAEIVDYLHNPAKYTDVGALMPKGVLLVGPPGTGKTMLAKAVAGESN 223 Query: 80 VNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 V F S SG + A + L +++ ++FIDEI Sbjct: 224 VPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 266 >gi|167035355|ref|YP_001670586.1| ATP-dependent protease La [Pseudomonas putida GB-1] gi|166861843|gb|ABZ00251.1| ATP-dependent protease La [Pseudomonas putida GB-1] Length = 805 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++LS+ + + + PL DR + IRL+ Y E+ I +R Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKR 540 >gi|118593590|ref|ZP_01550967.1| ATP-dependent metalloprotease FtsH [Stappia aggregata IAM 12614] gi|118433808|gb|EAV40468.1| ATP-dependent metalloprotease FtsH [Stappia aggregata IAM 12614] Length = 608 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 +L VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 193 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARKAAPAI 252 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 253 IFIDELDAL 261 >gi|114569889|ref|YP_756569.1| ATP-dependent protease ATP-binding subunit ClpX [Maricaulis maris MCS10] gi|122316140|sp|Q0AQ06|CLPX_MARMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|114340351|gb|ABI65631.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Maricaulis maris MCS10] Length = 423 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 112 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 172 YNVERAQRGIVYIDEIDKIS 191 >gi|120401100|ref|YP_950929.1| ATPase central domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119953918|gb|ABM10923.1| AAA ATPase, central domain protein [Mycobacterium vanbaalenii PYR-1] Length = 574 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 98/233 (42%), Gaps = 42/233 (18%) Query: 4 REGLLSRNVSQEDADISLLRPR-TLEEF-----TGQVEACSNLKVFIEAAKARAEALDHV 57 RE LL+ ++ D I L R + +E + +V A +KV A+A H+ Sbjct: 280 REMLLADAQAELDRQIGLTRVKDQIERYRAATQMAKVRAARGMKV--------AQASKHM 331 Query: 58 LFVGPPGLGKTTLAQVVAR---ELGV----NFRSTSGP--VIAKAGDLAALLTNLEDR-- 106 +F GPPG GKTT+A+VVA LGV TS V G A DR Sbjct: 332 IFTGPPGTGKTTIARVVANILAGLGVIAEPKLVETSRKDFVAEYEGQSAVKTARTIDRAM 391 Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR---FTLIAATT- 161 VLFIDE + L V+E D + D E ++ R +IA + Sbjct: 392 GGVLFIDEAYTL---VQE------RDGRADPFGTEALDTLLARMENDRDRLVVIIAGYSN 442 Query: 162 ---RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 R+ + L+ RF I + Y E++ I + A ++TDEAA + Sbjct: 443 DIDRLLETNDGLRSRFSTRIEFDSYSPEEIVDIARVIAAHNDSSLTDEAAKRV 495 >gi|71907346|ref|YP_284933.1| Lon-A peptidase [Dechloromonas aromatica RCB] gi|71846967|gb|AAZ46463.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16 [Dechloromonas aromatica RCB] Length = 804 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 70/274 (25%), Positives = 111/274 (40%), Gaps = 64/274 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+L Q +A+ F R G V +A G + + LT Sbjct: 353 LCLVGPPGVGKTSLGQSIAKATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILSSLT 412 Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + R+ LF +DE+ +L S + E+L P D V V +LS Sbjct: 413 KVGVRNPLFLLDEVDKLGQDFRGDPSSALLEVLDPEQNHTFQDHYV-------EVDFDLS 465 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKLTGLA 202 +A + + PL DR + IRL+ Y E E + K I G K T +A Sbjct: 466 DVMFVATANTLN-IPAPLLDRMEV-IRLSGYTEDEKVNIAMRYLLPKQIKNNGLKKTEIA 523 Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262 V D A +I VR + A + + REI + + R + + + Sbjct: 524 VADSAVRDI-----------------VRYYTREAGVRALEREI--SKICRKVVKTLVLKK 564 Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296 D + L A+N +G++ S G++E + + Sbjct: 565 RDSKILVN-AKNLDKF-LGVQRYSYGMAEKENQV 596 >gi|330950049|gb|EGH50309.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae Cit 7] Length = 805 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 554 Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230 + L+++D A E R G + +L + VR Sbjct: 555 SKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589 >gi|319949375|ref|ZP_08023444.1| ATP-dependent protease FtsH [Dietzia cinnamea P4] gi|319436958|gb|EFV92009.1| ATP-dependent protease FtsH [Dietzia cinnamea P4] Length = 738 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE + +K F++ AR E L VL GPPG GKT LA+ VA E GV F S SG Sbjct: 179 VEELNEIKDFLQN-PARYERLGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 236 >gi|303229430|ref|ZP_07316220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella atypica ACS-134-V-Col7a] gi|302515966|gb|EFL57918.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella atypica ACS-134-V-Col7a] Length = 417 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +VLF+GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 110 NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDI 169 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 170 ERAERGIIYIDEIDKIA 186 >gi|302792154|ref|XP_002977843.1| hypothetical protein SELMODRAFT_268097 [Selaginella moellendorffii] gi|300154546|gb|EFJ21181.1| hypothetical protein SELMODRAFT_268097 [Selaginella moellendorffii] Length = 789 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VLF GPPG GKT LA+ VA + NF + GP + G+ + + D+ V Sbjct: 510 VLFYGPPGCGKTLLAKAVATMIHCNFITIKGPELLSKYLGESEGNVREVFDKARASAPCV 569 Query: 109 LFIDEIHRLSI 119 LF DE+ ++I Sbjct: 570 LFFDELDSIAI 580 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ VA E G F +GP I Sbjct: 237 ILLFGPPGTGKTMIARAVANETGAFFTVINGPEI 270 >gi|258649122|ref|ZP_05736591.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC 51259] gi|260850774|gb|EEX70643.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC 51259] Length = 594 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 93/253 (36%), Gaps = 58/253 (22%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELG-- 79 RP ++ GQ + LK I A K L H LF GP G+GKTT A++ A+ + Sbjct: 12 RPTNFDDVVGQHALTTTLKNAIAAGK-----LAHAYLFCGPRGVGKTTCARIFAKTINCL 66 Query: 80 -----------------------VNFRSTSGPVIAKAGDLAAL------LTNLEDRDVLF 110 +N A D+ AL L + V Sbjct: 67 HPGPGGEACGECESCQAFQAGRSLNVHELDAASNNSAEDIRALIEQVNILPQMGRYKVFI 126 Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170 IDE+H LS +E+ P A ++ I ATT L + Sbjct: 127 IDEVHMLSTAAANAFLKTLEE----------PPAHAI--------FILATTEKQKLLPTI 168 Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230 R I N E+ D+ ++R A+ + + A IA ++ G R A + +V Sbjct: 169 LSRCQI-YDFNRMEVNDIVHHLKRVAEDQHIQYEEAALNVIAQKADGGMRDALSIFDQVA 227 Query: 231 DFAE--VAHAKTI 241 FAE + +AK I Sbjct: 228 GFAEGNLTYAKVI 240 >gi|221061149|ref|XP_002262144.1| ATPase [Plasmodium knowlesi strain H] gi|193811294|emb|CAQ42022.1| ATPase, putative [Plasmodium knowlesi strain H] Length = 964 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ ++ E+ NF + GP I Sbjct: 603 ILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEI 636 >gi|167769422|ref|ZP_02441475.1| hypothetical protein ANACOL_00752 [Anaerotruncus colihominis DSM 17241] gi|167668390|gb|EDS12520.1| hypothetical protein ANACOL_00752 [Anaerotruncus colihominis DSM 17241] Length = 465 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108 +VL +GP G+GKT LAQ +AR L V F + +AG + + N+ D DV Sbjct: 144 NVLLLGPTGVGKTLLAQTLARMLNVPFAIADATTLTEAGYVGEDVENILLRLLQAADYDV 203 Query: 109 -------LFIDEIHRLS 118 ++IDEI ++S Sbjct: 204 ERAQKGIIYIDEIDKIS 220 >gi|94263344|ref|ZP_01287159.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium MLMS-1] gi|93456299|gb|EAT06429.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium MLMS-1] Length = 827 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 21/26 (80%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF 82 + FVGPPG+GKT+L Q +AR +G NF Sbjct: 402 LCFVGPPGVGKTSLGQSIARSMGRNF 427 >gi|58040097|ref|YP_192061.1| recombination factor protein RarA [Gluconobacter oxydans 621H] gi|58002511|gb|AAW61405.1| ATPase associated with chromosome architecture/replication [Gluconobacter oxydans 621H] Length = 470 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 16/119 (13%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 LRP+ LE+ GQ + L +E L ++ G PG GKTT+A+++A Sbjct: 57 LRPKRLEDVRGQDHLLGPEGTLTRMLERG-----TLSSLILWGGPGCGKTTIARLLAGRA 111 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAME 130 G+ F S V + DL + + +LF+DEIHR + ++ P +E Sbjct: 112 GL-FYSQISAVFSGVADLRRAFEEADKKQAATGKGTLLFVDEIHRFNRAQQDGFLPYVE 169 >gi|67521818|ref|XP_658970.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4] gi|40746393|gb|EAA65549.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4] Length = 628 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108 VL GPPG GKT +A A ELGV F S S P I +G+ AL + E+ + Sbjct: 101 VLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEAKRLAPCL 160 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 161 IFIDEIDAIT 170 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 405 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 436 >gi|332030728|gb|EGI70404.1| Paraplegin [Acromyrmex echinatior] Length = 725 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKAGDLAA-----LLTNLEDR--DV 108 VL +GPPG GKT LA+ VA E V F S +G I G L A L E R + Sbjct: 293 VLLLGPPGCGKTLLAKAVATEASVPFLSMNGSEFIEVFGGLGAARVRHLFKEAEKRAPSI 352 Query: 109 LFIDEI 114 ++IDEI Sbjct: 353 IYIDEI 358 >gi|328545133|ref|YP_004305242.1| ATP-dependent metallopeptidase HflB subfamily [polymorphum gilvum SL003B-26A1] gi|326414875|gb|ADZ71938.1| ATP-dependent metallopeptidase HflB subfamily [Polymorphum gilvum SL003B-26A1] Length = 604 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 +L VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 192 ILLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRDLFEQARKAAPAI 251 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 252 IFIDELDAL 260 >gi|318061596|ref|ZP_07980317.1| cell division protein ftsH-like protein [Streptomyces sp. SA3_actG] gi|318077180|ref|ZP_07984512.1| cell division protein ftsH-like protein [Streptomyces sp. SA3_actF] Length = 684 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 113/255 (44%), Gaps = 53/255 (20%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 182 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSD 241 Query: 90 IAK--AGDLAALLTNLEDR------DVLFIDEI-----HRLSIIVEEILYPAMEDFQLDL 136 + G A+ + +L ++ ++F+DEI HR + + Sbjct: 242 FVEMFVGVGASRVRDLFEQAKANAPAIVFVDEIDAVGRHRGAGL---------------- 285 Query: 137 MVGEGPSARSVKIN-----LSRFT------LIAATTRVGLLTNPL--QDRFGIPIRLNFY 183 G G R +N + F LIAAT R +L L RF I ++ Sbjct: 286 --GGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPALLRPGRFDRQIAVDRP 343 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 +++ I++ + G VTD ++A +R TP G L V + A + A++ + Sbjct: 344 DMQGRLEILK--VHVQGKPVTD--GVDLAAVARRTPGFTGADLANVLNEAALLTARS-DK 398 Query: 244 EIADAALLRLAIDKM 258 ++ D ++L AID++ Sbjct: 399 KLIDNSMLDEAIDRV 413 >gi|302342889|ref|YP_003807418.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfarculus baarsii DSM 2075] gi|301639502|gb|ADK84824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfarculus baarsii DSM 2075] Length = 417 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR + V F + +AG D+ ++ NL Sbjct: 112 NILLIGPTGCGKTLLAQTLARIINVPFTIADATTLTEAGYVGEDVENIILNLLQAADYDV 171 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 172 ERAQRGIVYIDEIDKIA 188 >gi|282878237|ref|ZP_06287033.1| ATP-dependent metallopeptidase HflB [Prevotella buccalis ATCC 35310] gi|281299655|gb|EFA92028.1| ATP-dependent metallopeptidase HflB [Prevotella buccalis ATCC 35310] Length = 677 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E GV F S SG V A + L +++ ++ Sbjct: 237 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKSPCII 296 Query: 110 FIDEI 114 FIDEI Sbjct: 297 FIDEI 301 >gi|257486571|ref|ZP_05640612.1| ATP-dependent protease La [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330889510|gb|EGH22171.1| ATP-dependent protease La [Pseudomonas syringae pv. mori str. 301020] gi|330989025|gb|EGH87128.1| ATP-dependent protease La [Pseudomonas syringae pv. lachrymans str. M301315] Length = 805 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 554 Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230 + L+++D A E R G + +L + VR Sbjct: 555 SKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589 >gi|255527646|ref|ZP_05394506.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7] gi|296186911|ref|ZP_06855312.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans P7] gi|255508659|gb|EET85039.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7] gi|296048625|gb|EFG88058.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans P7] Length = 600 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225 >gi|303276573|ref|XP_003057580.1| microtubule-severing protein katanin 60kDa subunit [Micromonas pusilla CCMP1545] gi|226460237|gb|EEH57531.1| microtubule-severing protein katanin 60kDa subunit [Micromonas pusilla CCMP1545] Length = 484 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ VA E G F + S +A ++ + +L +L R Sbjct: 234 VLMFGPPGTGKTMLAKAVATECGTTFFNISSSTLASKYRGESERMVRILFDLARRHAPST 293 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 294 IFIDEIDSL 302 >gi|212690530|ref|ZP_03298658.1| hypothetical protein BACDOR_00012 [Bacteroides dorei DSM 17855] gi|212666879|gb|EEB27451.1| hypothetical protein BACDOR_00012 [Bacteroides dorei DSM 17855] Length = 370 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 29/127 (22%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD---------HVLFVGPPGL 65 L +P+ ++EF GQ +A L V + R + +D +++ VG G Sbjct: 20 LPKPKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGT 79 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111 GKT LA+ +A+ L V F V+ +AG D+ +LLT L +R ++FI Sbjct: 80 GKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAERGIVFI 139 Query: 112 DEIHRLS 118 DEI +++ Sbjct: 140 DEIDKIA 146 >gi|168026689|ref|XP_001765864.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683041|gb|EDQ69455.1| predicted protein [Physcomitrella patens subsp. patens] Length = 554 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 88/214 (41%), Gaps = 35/214 (16%) Query: 8 LSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPG 64 L +S E+ +I L + R E G + + ++ K + +A VL FVGPPG Sbjct: 21 LPWQISSEEHEIDLEAAKVRLDSEHYGLSKVKKRIIEYLAVRKLKPDARGPVLCFVGPPG 80 Query: 65 LGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR-----DV 108 +GKT+LA +A LG F R + G V +A G + L + R V Sbjct: 81 VGKTSLASSIAGALGRRFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGIKRVGVNNPV 140 Query: 109 LFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160 + +DEI + V E+L P D + +V ++S+ +A Sbjct: 141 MLLDEIDKTGADVRGDPAAALLEVLDPEQNKTFNDHYL-------NVPFDVSKVVFVATA 193 Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 R+ + PL DR + I L Y E+ I R Sbjct: 194 NRMQTMPAPLLDRMEV-IELPGYTSEEKLRIAMR 226 >gi|28572335|ref|NP_789115.1| FtsH-like cell division protein [Tropheryma whipplei TW08/27] gi|28410466|emb|CAD66852.1| FtsH-like putative cell division protein [Tropheryma whipplei TW08/27] Length = 666 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 20/206 (9%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L ++ + Sbjct: 198 VLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKQNSPSI 257 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 +FIDEI + ++ + L+ ++ E VK N+ LIAAT R +L Sbjct: 258 IFIDEIDAVGRRRGSGFGGGHDEREQTLNQLLVEM-DGFDVKTNI---ILIAATNRSDVL 313 Query: 167 TNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224 + L RF + ++ ++ I+Q A+ ++ + ++ + +R TP G Sbjct: 314 DSALLRPGRFDRHVAIDAPNLQGRLKILQVHARTKPVS----KSVDLEVLARKTPGFTGA 369 Query: 225 LLRRVRDFAEVAHAKTITREIADAAL 250 L V + A + A++ + I D AL Sbjct: 370 DLANVLNEAALLTARSNAQIIDDRAL 395 >gi|332703912|ref|ZP_08424000.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfovibrio africanus str. Walvis Bay] gi|332554061|gb|EGJ51105.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfovibrio africanus str. Walvis Bay] Length = 415 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 30/144 (20%) Query: 5 EGLLSRNVSQEDADISLLRPRTL-----EEFTGQVEACSNLKVFIEAAKARAEALD---- 55 E + +VS+ D LL P+ + E GQ +A L V + R D Sbjct: 44 EIIAQESVSEGLEDGRLLTPQEIKDQLDEHVIGQEQAKKVLSVAVHNHYKRVYYADTAGE 103 Query: 56 -------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALL 100 ++L +GP G GKT LAQ +AR L V F + +AG L LL Sbjct: 104 DVEIDKSNILLLGPTGCGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLL 163 Query: 101 TNLE------DRDVLFIDEIHRLS 118 N + R +++IDEI +++ Sbjct: 164 QNADYDIEAASRGIVYIDEIDKIA 187 >gi|303231335|ref|ZP_07318069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella atypica ACS-049-V-Sch6] gi|302513931|gb|EFL55939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella atypica ACS-049-V-Sch6] Length = 417 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +VLF+GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 110 NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDI 169 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 170 ERAERGIIYIDEIDKIA 186 >gi|302521006|ref|ZP_07273348.1| cell division protein FtsH [Streptomyces sp. SPB78] gi|333025313|ref|ZP_08453377.1| putative cell division protein FtsH [Streptomyces sp. Tu6071] gi|302429901|gb|EFL01717.1| cell division protein FtsH [Streptomyces sp. SPB78] gi|332745165|gb|EGJ75606.1| putative cell division protein FtsH [Streptomyces sp. Tu6071] Length = 682 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 113/255 (44%), Gaps = 53/255 (20%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 180 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSD 239 Query: 90 IAK--AGDLAALLTNLEDR------DVLFIDEI-----HRLSIIVEEILYPAMEDFQLDL 136 + G A+ + +L ++ ++F+DEI HR + + Sbjct: 240 FVEMFVGVGASRVRDLFEQAKANAPAIVFVDEIDAVGRHRGAGL---------------- 283 Query: 137 MVGEGPSARSVKIN-----LSRFT------LIAATTRVGLLTNPL--QDRFGIPIRLNFY 183 G G R +N + F LIAAT R +L L RF I ++ Sbjct: 284 --GGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPALLRPGRFDRQIAVDRP 341 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 +++ I++ + G VTD ++A +R TP G L V + A + A++ + Sbjct: 342 DMQGRLEILK--VHVQGKPVTD--GVDLAAVARRTPGFTGADLANVLNEAALLTARS-DK 396 Query: 244 EIADAALLRLAIDKM 258 ++ D ++L AID++ Sbjct: 397 KLIDNSMLDEAIDRV 411 >gi|225850709|ref|YP_002730943.1| ATP-dependent protease La [Persephonella marina EX-H1] gi|225646048|gb|ACO04234.1| ATP-dependent protease La [Persephonella marina EX-H1] Length = 801 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 32/155 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L + +AR LG F R + G V +A G + L R Sbjct: 366 LCFVGPPGVGKTSLGKSIARSLGRKFVRQSLGGVRDEAEIRGHRRTYVGALPGRIIQAIK 425 Query: 107 ------DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V+ +DE+ +L+ E+L P D +G V +LS Sbjct: 426 QAGTKNPVIMLDEVDKLASDFRGDPASALLEVLDPEQNREFTDHYLG-------VPFDLS 478 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 I R+ + PL DR + IR+ Y E+ Sbjct: 479 EVMFICTANRIDTIPRPLLDRMEV-IRIPGYSEEE 512 >gi|195999648|ref|XP_002109692.1| hypothetical protein TRIADDRAFT_53969 [Trichoplax adhaerens] gi|190587816|gb|EDV27858.1| hypothetical protein TRIADDRAFT_53969 [Trichoplax adhaerens] Length = 806 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 17/24 (70%), Positives = 18/24 (75%) Query: 58 LFVGPPGLGKTTLAQVVARELGVN 81 L GPPGLGKTTLA V+AR G N Sbjct: 291 LLCGPPGLGKTTLAHVIARHAGYN 314 >gi|29347020|ref|NP_810523.1| DNA polymerase III subunit gamma/tau [Bacteroides thetaiotaomicron VPI-5482] gi|253572655|ref|ZP_04850056.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 1_1_6] gi|29338918|gb|AAO76717.1| DNA polymerase III subunit gamma/tau [Bacteroides thetaiotaomicron VPI-5482] gi|251837787|gb|EES65877.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 1_1_6] Length = 619 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 10/110 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + LK I K L H LF GP G+GKTT A++ A+ + Sbjct: 12 RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66 Query: 82 FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127 +T G + A N+ + D + + + +VE++ P Sbjct: 67 TPTTDGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116 >gi|324508707|gb|ADY43673.1| Replication factor C subunit 4 [Ascaris suum] Length = 354 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RPR +++ Q E S LK ++ A L ++LF GPPG GKT+ A + REL N Sbjct: 36 RPRKVDDIVFQDEVVSVLKKVLKGAD-----LPNLLFYGPPGTGKTSAAVALCRELFKN 89 >gi|282880908|ref|ZP_06289599.1| ATP-dependent metallopeptidase HflB [Prevotella timonensis CRIS 5C-B1] gi|281305131|gb|EFA97200.1| ATP-dependent metallopeptidase HflB [Prevotella timonensis CRIS 5C-B1] Length = 673 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVL 109 L VGPPG GKT LA+ VA E GV F S SG V A + L +++ ++ Sbjct: 237 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKSPSII 296 Query: 110 FIDEI 114 FIDEI Sbjct: 297 FIDEI 301 >gi|210615409|ref|ZP_03290536.1| hypothetical protein CLONEX_02752 [Clostridium nexile DSM 1787] gi|210150258|gb|EEA81267.1| hypothetical protein CLONEX_02752 [Clostridium nexile DSM 1787] Length = 426 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 28/129 (21%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63 DI+LL+P ++ F GQ EA L V + R A ++L +GP Sbjct: 69 DINLLKPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELQKSNILMLGPT 128 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109 G GKT LAQ +A+ L V F + +AG + + N+ + ++ Sbjct: 129 GCGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEHGII 188 Query: 110 FIDEIHRLS 118 ++DEI +++ Sbjct: 189 YLDEIDKIT 197 >gi|221061817|ref|XP_002262478.1| cell division protein ftsh [Plasmodium knowlesi strain H] gi|193811628|emb|CAQ42356.1| cell division protein ftsh, putative [Plasmodium knowlesi strain H] Length = 862 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG GKT LA+ VA E V + TSGP Sbjct: 189 VLLVGPPGSGKTMLARAVATEANVPYIYTSGP 220 >gi|104783338|ref|YP_609836.1| DNA-binding ATP-dependent protease La-2 [Pseudomonas entomophila L48] gi|95112325|emb|CAK17052.1| DNA-binding ATP-dependent protease La-2 [Pseudomonas entomophila L48] Length = 807 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 388 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 447 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 +E + V+ +DEI ++ + E L P D LDL + Sbjct: 448 EVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 496 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 497 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVSK 555 Query: 199 TGLAVTDEA---ACEIAMRSRGTPRIAGRLLRRVR 230 L+++D A E R G ++ +L + VR Sbjct: 556 HSLSISDSALRTVIEGYAREAGVRQLEKQLGKLVR 590 >gi|21325468|dbj|BAC00090.1| ATP-dependent Zn proteases [Corynebacterium glutamicum ATCC 13032] Length = 860 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 35/70 (50%), Gaps = 9/70 (12%) Query: 26 TLEEFTGQVEACSNL---KVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77 T + G EA L K F+E R EAL VL GPPG GKT LA+ VA E Sbjct: 170 TFADVAGAEEAVDELHEIKDFLEDP-TRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 228 Query: 78 LGVNFRSTSG 87 GV F S SG Sbjct: 229 AGVPFYSISG 238 >gi|71735297|ref|YP_276077.1| ATP-dependent protease La [Pseudomonas syringae pv. phaseolicola 1448A] gi|289649883|ref|ZP_06481226.1| ATP-dependent protease La [Pseudomonas syringae pv. aesculi str. 2250] gi|71555850|gb|AAZ35061.1| ATP-dependent protease La [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325575|gb|EFW81637.1| ATP-dependent protease La [Pseudomonas syringae pv. glycinea str. B076] gi|320327139|gb|EFW83153.1| ATP-dependent protease La [Pseudomonas syringae pv. glycinea str. race 4] gi|330879209|gb|EGH13358.1| ATP-dependent protease La [Pseudomonas syringae pv. glycinea str. race 4] Length = 805 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 554 Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230 + L+++D A E R G + +L + VR Sbjct: 555 SKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589 >gi|14520328|ref|NP_125803.1| replication factor C small subunit [Pyrococcus abyssi GE5] gi|42559543|sp|Q9V2G4|RFCS_PYRAB RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit; AltName: Full=PabRFC small subunit; Contains: RecName: Full=Pab RFC-1 intein; Contains: RecName: Full=Pab RFC-2 intein gi|5457543|emb|CAB49034.1| rfcS intein containing activator 1, replication factor C, small subunit [Pyrococcus abyssi GE5] Length = 1437 Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 13/107 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQVVAR-ELG 79 RP+ LEE GQ LK +++ ++ H+LF GPPG+GK T A+V+A EL Sbjct: 22 RPQKLEEIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKCLTGDAKVIANGEL- 75 Query: 80 VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126 +T G ++ + + T + VL IDE +L + E +Y Sbjct: 76 ----TTIGELVERISNGKLGPTPVRGLTVLGIDEDGKLVELPVEYVY 118 >gi|296243008|ref|YP_003650495.1| proteasome-activating nucleotidase [Thermosphaera aggregans DSM 11486] gi|296095592|gb|ADG91543.1| Proteasome-activating nucleotidase [Thermosphaera aggregans DSM 11486] Length = 404 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 22/124 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E G F S G + + G+ A ++ L + + Sbjct: 172 VLLYGPPGCGKTMLAKAVASEAGATFISIVGSELVQKFIGEGARIVRELFAYARRKAPAI 231 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMV------GEGPSARSVKINLSRFTLIAATTR 162 +FIDEI ++ +I + Q LM G P L R +IAAT R Sbjct: 232 IFIDEIDAIAAKRIDIGTSGEREVQRTLMQLLAELDGFKP--------LDRIKVIAATNR 283 Query: 163 VGLL 166 + +L Sbjct: 284 IDIL 287 >gi|288870055|ref|ZP_06112759.2| ATP-dependent metalloprotease FtsH [Clostridium hathewayi DSM 13479] gi|288868612|gb|EFD00911.1| ATP-dependent metalloprotease FtsH [Clostridium hathewayi DSM 13479] Length = 606 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228 >gi|296121876|ref|YP_003629654.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM 3776] gi|296014216|gb|ADG67455.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM 3776] Length = 650 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL +GPPG GKT LA+ A E GV F S +G V A + L N ++ + Sbjct: 233 VLLMGPPGTGKTLLARATAGEAGVPFYSINGSEFIQMFVGVGASRVRDLFRNAKENSPCI 292 Query: 109 LFIDEI 114 LFIDEI Sbjct: 293 LFIDEI 298 >gi|225181447|ref|ZP_03734890.1| ATP-dependent metalloprotease FtsH [Dethiobacter alkaliphilus AHT 1] gi|225167845|gb|EEG76653.1| ATP-dependent metalloprotease FtsH [Dethiobacter alkaliphilus AHT 1] Length = 652 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT +A+ VA E GV F S SG V A + L N + + Sbjct: 189 VLLVGPPGTGKTLIARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKSAPCI 248 Query: 109 LFIDEI 114 +FIDEI Sbjct: 249 IFIDEI 254 >gi|159471125|ref|XP_001693707.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] gi|158283210|gb|EDP08961.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] Length = 578 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F TSG Sbjct: 187 VLLVGPPGTGKTMLARAIAGEAGVPFFYTSG 217 >gi|146161442|ref|XP_001007155.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila] gi|146146775|gb|EAR86910.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila SB210] Length = 345 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP L+ + +K FIE K L ++LF GPPG GKT+L +A++L G N Sbjct: 25 RPENLDNVISHEYIVATIKKFIEEDKK----LPNLLFYGPPGTGKTSLIVALAKQLYGKN 80 Query: 82 FR 83 ++ Sbjct: 81 YK 82 >gi|320580148|gb|EFW94371.1| Putative ATPase of the AAA family [Pichia angusta DL-1] Length = 809 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 554 VLMWGPPGCGKTLLAKAVANESKANFISVKGP 585 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKTT+A +A EL V F S S P + Sbjct: 222 VLLHGPPGCGKTTIAYALAGELQVPFISISAPSV 255 >gi|302038231|ref|YP_003798553.1| cell division protease FtsH [Candidatus Nitrospira defluvii] gi|300606295|emb|CBK42628.1| Cell division protease FtsH [Candidatus Nitrospira defluvii] Length = 594 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 187 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 217 >gi|298488684|ref|ZP_07006713.1| ATP-dependent protease La Type I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156757|gb|EFH97848.1| ATP-dependent protease La Type I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 805 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 554 Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230 + L+++D A E R G + +L + VR Sbjct: 555 SKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589 >gi|266624422|ref|ZP_06117357.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium hathewayi DSM 13479] gi|288863729|gb|EFC96027.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium hathewayi DSM 13479] Length = 433 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 28/130 (21%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA---EALD------HVLFVGP 62 +DI+L++P+ ++ F GQ A L V + R ++D ++L +GP Sbjct: 60 SDINLMKPKEIKSFLDDYVIGQDSAKKVLSVAVYNHYKRITSRRSMDVDVQKSNILMLGP 119 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------V 108 G GKT +AQ +A+ L V F + +AG D+ +L L D D + Sbjct: 120 TGCGKTYVAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDISRAEYGI 179 Query: 109 LFIDEIHRLS 118 ++IDEI +++ Sbjct: 180 IYIDEIDKIT 189 >gi|227512324|ref|ZP_03942373.1| M41 family endopeptidase FtsH [Lactobacillus buchneri ATCC 11577] gi|227084499|gb|EEI19811.1| M41 family endopeptidase FtsH [Lactobacillus buchneri ATCC 11577] Length = 717 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 227 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 286 Query: 109 LFIDEI 114 +FIDEI Sbjct: 287 IFIDEI 292 >gi|157363863|ref|YP_001470630.1| DNA polymerase III, subunits gamma and tau [Thermotoga lettingae TMO] gi|157314467|gb|ABV33566.1| DNA polymerase III, subunits gamma and tau [Thermotoga lettingae TMO] Length = 465 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 56/258 (21%), Positives = 100/258 (38%), Gaps = 56/258 (21%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ ++ Q++A K+ ++ A + + +F GP G GKT++A+++A+ L + Sbjct: 9 RPKNFDQIIDQLQA----KLVLQNALLKNKISHAYIFSGPRGTGKTSVARILAKALNCSN 64 Query: 83 RSTSGPV------------------------------IAKAGDLAALLTNLEDRDVLFID 112 R P I K D L + ID Sbjct: 65 RKGYEPCCECESCLSIDRGTHPDVIELDAASNRGIDEIRKIRDAVGFKPMLSSHKIYIID 124 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172 E H L+ E F L E P + + + ATT + + + Sbjct: 125 EFHMLT----------REAFNALLKTLEEPPEKVL--------FVLATTNLERVPQTIIS 166 Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 R + NF E L+ I ++ A + + ++AA IA R+ G R A L ++ ++ Sbjct: 167 RCQVIEFRNFSEDAILENI-RKVAHFESIELHEDAARMIARRASGGMRDALSYLEQIANY 225 Query: 233 AEVAHAKTITREIADAAL 250 A+ + IT ++ + AL Sbjct: 226 AD---GQVITPQVVEKAL 240 >gi|153941351|ref|YP_001392879.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str. Langeland] gi|152937247|gb|ABS42745.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str. Langeland] gi|295320856|gb|ADG01234.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str. 230613] Length = 601 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225 >gi|108760095|ref|YP_632507.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622] gi|108463975|gb|ABF89160.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622] Length = 674 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 10/67 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107 VL VGPPG GKT LA+ VA E GV F S SG A+ DL A T+ + Sbjct: 226 VLLVGPPGTGKTLLARAVAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFAQATS-KAPC 284 Query: 108 VLFIDEI 114 ++FIDE+ Sbjct: 285 IIFIDEL 291 >gi|15922015|ref|NP_377684.1| cell division control protein [Sulfolobus tokodaii str. 7] gi|15622803|dbj|BAB66793.1| 587aa long hypothetical cell division control protein [Sulfolobus tokodaii str. 7] Length = 587 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 8/81 (9%) Query: 46 AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED 105 A K + + +L GPPG GKT++A+ +A EL +F SG I+ AG A E Sbjct: 353 AEKLGIKPVKGLLLYGPPGTGKTSIAKALANELNASFIILSGEEISSAGPFNAGEIIAEK 412 Query: 106 ----RD----VLFIDEIHRLS 118 RD ++FIDEI ++ Sbjct: 413 FHIARDNAPAIIFIDEIDMIA 433 >gi|323491004|ref|ZP_08096198.1| ATP-dependent metalloprotease FtsH [Planococcus donghaensis MPA1U2] gi|323395360|gb|EGA88212.1| ATP-dependent metalloprotease FtsH [Planococcus donghaensis MPA1U2] Length = 672 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 203 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262 Query: 109 LFIDEI 114 +FIDEI Sbjct: 263 IFIDEI 268 >gi|302388370|ref|YP_003824192.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum WM1] gi|302198998|gb|ADL06569.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum WM1] Length = 606 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 196 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 226 >gi|281211293|gb|EFA85458.1| AAA ATPase domain-containing protein [Polysphondylium pallidum PN500] Length = 442 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA-GDLAALLTNL------EDRDV 108 +L GPPG GK+ LA+ VA E+ F S S ++ K GD L+ L + V Sbjct: 170 ILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMARAANNSV 229 Query: 109 LFIDEIHRL 117 +F+DEI L Sbjct: 230 IFVDEIDSL 238 >gi|301093002|ref|XP_002997350.1| replication factor C subunit, putative [Phytophthora infestans T30-4] gi|262110748|gb|EEY68800.1| replication factor C subunit, putative [Phytophthora infestans T30-4] Length = 893 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 16/73 (21%) Query: 23 RPRTLEEFTGQVEACSNLKVFI---EAAKARA-------------EALDHVLFVGPPGLG 66 +P+TL G +E LK ++ EA + VL GPPG+G Sbjct: 341 KPQTLNHMIGNIELGKKLKTWLLDWEAMHVKGTKKVPFSTKLSENRGAKTVLLSGPPGIG 400 Query: 67 KTTLAQVVARELG 79 KTT+A +VARE G Sbjct: 401 KTTIANLVARECG 413 >gi|291614262|ref|YP_003524419.1| ATP-dependent Clp protease ATP-binding protein ClpX [Sideroxydans lithotrophicus ES-1] gi|291584374|gb|ADE12032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sideroxydans lithotrophicus ES-1] Length = 418 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 111 AKSNILLVGPTGSGKTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQACD 170 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 171 YDVERAQRGIVYIDEIDKIS 190 >gi|242062574|ref|XP_002452576.1| hypothetical protein SORBIDRAFT_04g028420 [Sorghum bicolor] gi|241932407|gb|EES05552.1| hypothetical protein SORBIDRAFT_04g028420 [Sorghum bicolor] Length = 543 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 83/213 (38%), Gaps = 55/213 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107 VLF GPPG GKT+ A+V+A++ GV V+ G + +L +L + Sbjct: 314 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEVVMSKYYGESERLLGSVFSLANDLPEGG 373 Query: 108 VLFIDEIHRLSIIVEEILYPA-----------MEDFQLDLMVGEGPSARSVKINLSRFTL 156 ++F+DE+ +I + ++ A ++ F+ D R + Sbjct: 374 IIFLDEVDSFAIARDSEMHEATRRILSVILRQIDGFEQD----------------RRVVV 417 Query: 157 IAATTRVGLLTNPLQDR------FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210 IAAT R L L R FG+P + EI Q LT E Sbjct: 418 IAATNRKEDLDPALISRFDSIICFGLPDQQTRAEI-----AAQYAKHLT--------RSE 464 Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 + S T ++GR +R V AE A + R Sbjct: 465 LVQFSLATEEMSGRDIRDVCQQAERHWASKLIR 497 >gi|222617306|gb|EEE53438.1| hypothetical protein OsJ_36529 [Oryza sativa Japonica Group] Length = 900 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 20/196 (10%) Query: 40 LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99 +K+ E A ++ L + VGP GLGKTTLA V R+L F+ + +++ D+ + Sbjct: 176 IKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKI 235 Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD----LMVGEGPSARSVK-INLSRF 154 + N+ + + E + I EE L A +F + +++ + S ++ K I + F Sbjct: 236 VRNIYCQ--VSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALF 293 Query: 155 -----TLIAATTR----VGLLTNPLQDR-FGI-PIRLNFYEIEDLKTIVQRGAKLTGLAV 203 + I TTR P DR F I P+ ++ + LK I G+K + Sbjct: 294 VNNCGSRIMTTTRNMAIAKSCCTPDHDRVFEIMPLSIDNSKSLFLKRIF--GSKDVCIPQ 351 Query: 204 TDEAACEIAMRSRGTP 219 DE EI + G+P Sbjct: 352 LDEVCYEILKKCGGSP 367 >gi|297582403|ref|YP_003698183.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens MLS10] gi|297140860|gb|ADH97617.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens MLS10] Length = 681 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT +A+ VA E GV F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLIARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|151944222|gb|EDN62501.1| AAA ATPase [Saccharomyces cerevisiae YJM789] Length = 1030 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F K R+ +LF GPPG GKT +A+ +A +NF S GP Sbjct: 756 ELFTSGIKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 799 >gi|119510170|ref|ZP_01629309.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414] gi|119465231|gb|EAW46129.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414] Length = 291 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 212 VLLVGPPGTGKTMLAKAVAGEAGVPFFSISG 242 >gi|116495971|ref|YP_807705.1| ATP-dependent Zn protease [Lactobacillus casei ATCC 334] gi|191639450|ref|YP_001988616.1| ATP-dependent zinc metalloendopeptidase FtsH (Cell division protein FtsH) [Lactobacillus casei BL23] gi|239630370|ref|ZP_04673401.1| ATP-dependent Zn protease [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067521|ref|YP_003789544.1| ATP-dependent Zn protease [Lactobacillus casei str. Zhang] gi|116106121|gb|ABJ71263.1| membrane protease FtsH catalytic subunit [Lactobacillus casei ATCC 334] gi|190713752|emb|CAQ67758.1| ATP-dependent zinc metalloendopeptidase FtsH (Cell division protein FtsH) [Lactobacillus casei BL23] gi|239526653|gb|EEQ65654.1| ATP-dependent Zn protease [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439928|gb|ADK19694.1| ATP-dependent Zn protease [Lactobacillus casei str. Zhang] gi|327383542|gb|AEA55018.1| ATP-dependent metalloprotease FtsH [Lactobacillus casei LC2W] gi|327386735|gb|AEA58209.1| ATP-dependent metalloprotease FtsH [Lactobacillus casei BD-II] Length = 715 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPSI 284 Query: 109 LFIDEI 114 +FIDEI Sbjct: 285 IFIDEI 290 >gi|91215670|ref|ZP_01252640.1| putative transmembrane AAA-metalloprotease FtsH [Psychroflexus torquis ATCC 700755] gi|91186136|gb|EAS72509.1| putative transmembrane AAA-metalloprotease FtsH [Psychroflexus torquis ATCC 700755] Length = 699 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVL 109 L VGPPG GKT LA+ VA E GV F S SG V A + L +++ ++ Sbjct: 238 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKEKSPSII 297 Query: 110 FIDEI 114 FIDEI Sbjct: 298 FIDEI 302 >gi|89889589|ref|ZP_01201100.1| ATPase involved in DNA repair [Flavobacteria bacterium BBFL7] gi|89517862|gb|EAS20518.1| ATPase involved in DNA repair [Flavobacteria bacterium BBFL7] Length = 1654 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 25/42 (59%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 R + + +L + PPG GKTTL + VA LG+ F +GP I Sbjct: 1283 RTDRMGLLLLISPPGYGKTTLMEYVANRLGLIFMKINGPAIG 1324 >gi|47087311|ref|NP_998649.1| nuclear valosin-containing protein-like [Danio rerio] gi|27881916|gb|AAH44464.1| Nuclear VCP-like [Danio rerio] Length = 796 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA G+NF S GP Sbjct: 557 LLLAGPPGCGKTLLAKAVANASGLNFISVKGP 588 Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109 L GPPG GKT LAQ VA E + S P V +G+ L L ++ +L Sbjct: 264 LLHGPPGCGKTLLAQAVAGETALPLLKISAPELVSGVSGESEQKLRELFEQAISSAPCIL 323 Query: 110 FIDEI 114 FIDEI Sbjct: 324 FIDEI 328 >gi|319891430|ref|YP_004148305.1| DNA polymerase III subunits gamma and tau [Staphylococcus pseudintermedius HKU10-03] gi|317161126|gb|ADV04669.1| DNA polymerase III subunits gamma and tau [Staphylococcus pseudintermedius HKU10-03] gi|323465400|gb|ADX77553.1| DNA polymerase III, subunits gamma and tau [Staphylococcus pseudintermedius ED99] Length = 567 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 + RP++ E+ GQ LK I A+ + +F GP G GKT++A++ A+ + Sbjct: 9 MFRPQSFEDVVGQEHVTKTLKNAI----AKGKQSHAYIFSGPRGTGKTSIAKIFAKAINC 64 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 R P A +T + DV+ ID Sbjct: 65 EVRDDGEPCNECAS--CKGITQGYNSDVIEID 94 >gi|294083693|ref|YP_003550450.1| ATP-dependent protease Clp [Candidatus Puniceispirillum marinum IMCC1322] gi|292663265|gb|ADE38366.1| ATP-dependent protease Clp [Candidatus Puniceispirillum marinum IMCC1322] Length = 420 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 112 NILLVGPTGCGKTLLAQTLARMLDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNV 171 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 ERAQRGIVYIDEVDKIS 188 >gi|227509312|ref|ZP_03939361.1| M41 family endopeptidase FtsH [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191242|gb|EEI71309.1| M41 family endopeptidase FtsH [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 717 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 227 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 286 Query: 109 LFIDEI 114 +FIDEI Sbjct: 287 IFIDEI 292 >gi|153952819|ref|YP_001393584.1| FtsH1 [Clostridium kluyveri DSM 555] gi|219853484|ref|YP_002470606.1| hypothetical protein CKR_0141 [Clostridium kluyveri NBRC 12016] gi|146345700|gb|EDK32236.1| FtsH1 [Clostridium kluyveri DSM 555] gi|219567208|dbj|BAH05192.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 600 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ ++ E GV F S SG + G A+ + +L D+ + Sbjct: 195 VLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNSPCI 254 Query: 109 LFIDEI 114 +FIDEI Sbjct: 255 VFIDEI 260 >gi|94986632|ref|YP_594565.1| ATP-dependent Zn proteases [Lawsonia intracellularis PHE/MN1-00] gi|94730881|emb|CAJ54244.1| ATP-dependent Zn proteases [Lawsonia intracellularis PHE/MN1-00] Length = 635 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 190 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 220 >gi|113474440|ref|YP_720501.1| ATP-dependent protease ATP-binding subunit ClpX [Trichodesmium erythraeum IMS101] gi|123057080|sp|Q118P6|CLPX_TRIEI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|110165488|gb|ABG50028.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Trichodesmium erythraeum IMS101] Length = 449 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 11/93 (11%) Query: 43 FIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG- 94 F+EA K+ + D V L +GP G GKT LAQ +A L V F + +AG Sbjct: 118 FLEAKKSGKSSQDEVELQKSNILLIGPTGCGKTLLAQTLADLLDVPFAVADATTLTEAGY 177 Query: 95 ---DLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124 D+ +L L L +DE R I ++EI Sbjct: 178 VGEDVENILLRLLQVADLEVDEAQRGIIYIDEI 210 >gi|332703913|ref|ZP_08424001.1| anti-sigma H sporulation factor, LonB [Desulfovibrio africanus str. Walvis Bay] gi|332554062|gb|EGJ51106.1| anti-sigma H sporulation factor, LonB [Desulfovibrio africanus str. Walvis Bay] Length = 820 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 48/195 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+LA+ +AR F R + G V +A G + L Sbjct: 364 LCFVGPPGVGKTSLAKSIARSTDRPFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 423 Query: 102 NLEDRDVLFI-DEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ + +FI DE+ ++S+ + E+L P A D LDL Sbjct: 424 RVKYNNPVFILDEVDKMSMDFRGDPSAALLEVLDPEQNNAFGDHYLDL-----------D 472 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLT 199 +LS+ I + + PL+DR I + E E K I Q G Sbjct: 473 YDLSKIFFITTANSLHSIPAPLRDRMEIIELPGYLETEKRQIARSFLLPKQIKQHGLTEE 532 Query: 200 GLAVTDEAACEIAMR 214 L+++D+A E+ R Sbjct: 533 NLSLSDDAMLEVIRR 547 >gi|332707482|ref|ZP_08427528.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] gi|332353740|gb|EGJ33234.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] Length = 626 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT +A+ VA E GV F S SG + G AA + +L ++ + Sbjct: 205 VLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCI 264 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 265 IFIDEL 270 >gi|320585759|gb|EFW98438.1| aaa family ATPase rvb2 [Grosmannia clavigera kw1407] Length = 780 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD-- 107 EA+ +L GPPG GKT +A+ VA E NF S GP + G+ L L +R Sbjct: 527 EAVGGILLWGPPGCGKTLVAKAVANESKANFISIRGPELLNKYVGESERALRELFERARA 586 Query: 108 ----VLFIDEIHRLS 118 V+F DE+ L+ Sbjct: 587 MTPCVIFFDEMDALA 601 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 26/188 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRDV------ 108 VL GP G GKT +A +A E F + SGP I +G+ + N+ + + Sbjct: 226 VLLYGPSGCGKTLVANAIAAETKAQFFAVSGPEIIGGVSGESEGNIRNIFEAAIRMAPSL 285 Query: 109 LFIDEIHRLSIIVEEILYPAMED-------FQLDLMVGEGPSARSVKINLSRFTLIAATT 161 +F+D+I ++ E+ AME+ +D + E + ++V ++AAT+ Sbjct: 286 IFLDDIEAIAGKQEQTAKGAMENRIALTLKKCMDRLQWETEAGKNV-------VVLAATS 338 Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221 L ++ RF I + ++ + + I+Q+ + LA D EIA R TP Sbjct: 339 DANNLNPLVRQRFDIEVAVSVPSQDAREQILQKMTQDMALA-DDVDLKEIA---RMTPGF 394 Query: 222 AGRLLRRV 229 G L+ V Sbjct: 395 VGSDLKNV 402 >gi|313206080|ref|YP_004045257.1| sigma 54 interacting domain protein [Riemerella anatipestifer DSM 15868] gi|312445396|gb|ADQ81751.1| Sigma 54 interacting domain protein [Riemerella anatipestifer DSM 15868] gi|315023741|gb|EFT36744.1| ATP-dependent Clp protease ATP-binding subunit clpX [Riemerella anatipestifer RA-YM] gi|325336480|gb|ADZ12754.1| ATP-dependent protease Clp, ATPase subunit, RNA polymerase sigma factor 54, interaction [Riemerella anatipestifer RA-GD] Length = 390 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +++ +G G GKT LA+ +AREL V F ++ +AG D+ ++L+ L Sbjct: 109 NIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRLLMVADYDV 168 Query: 104 --EDRDVLFIDEIHRLS 118 ++ ++FIDEI +++ Sbjct: 169 EKAEKGIVFIDEIDKIA 185 >gi|300857286|ref|YP_003782270.1| ATP-dependent metalloprotease [Clostridium ljungdahlii DSM 13528] gi|300437401|gb|ADK17168.1| ATP-dependent metalloprotease [Clostridium ljungdahlii DSM 13528] Length = 602 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ ++ E GV F S SG + G A+ + +L D+ + Sbjct: 197 VLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNSPCI 256 Query: 109 LFIDEI 114 +FIDEI Sbjct: 257 VFIDEI 262 >gi|295837282|ref|ZP_06824215.1| cell division protein [Streptomyces sp. SPB74] gi|295826448|gb|EDY46884.2| cell division protein [Streptomyces sp. SPB74] Length = 685 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 180 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 237 >gi|291280083|ref|YP_003496918.1| ATP-dependent Lon protease [Deferribacter desulfuricans SSM1] gi|290754785|dbj|BAI81162.1| ATP-dependent Lon protease [Deferribacter desulfuricans SSM1] Length = 777 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 64/276 (23%), Positives = 108/276 (39%), Gaps = 50/276 (18%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S+++ D++ + E+ G E + F+ K +L FVGPPG+GKT+L Sbjct: 311 SKDNLDLTHAKKILDEDHYGLKEVKERILEFLAVRKLNPNMKSPILCFVGPPGVGKTSLG 370 Query: 72 QVVARELGVNFRSTS---------------GPVIAKAGDLAALLTNL-EDRDVLFIDEIH 115 + +AR +G F S + A G + + N + V +DEI Sbjct: 371 KSIARAMGRKFHRISLGGMRDEAEIRGHRRTYIGAMPGKIIQGIKNCGTNNPVFMLDEID 430 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ S + E+L P + +D +G V +LS+ I + + Sbjct: 431 KIGMDFRGDPSSALLEVLDPEQNNSFVDHYLG-------VPFDLSKVLFITTANYLDPIP 483 Query: 168 NPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAVTDEAACEIAMRS------- 215 L+DR I I + Y ED K ++ R K GL + + A+ Sbjct: 484 PALKDRMEI-IYIPGYTEEDKVKIAEKYLIPRQIKENGLKESQIRFTKRAIEKIITGYTR 542 Query: 216 ----RGTPRIAGRLLRR-VRDFAEVAHAKTITREIA 246 R R+ G++ R+ R +AE K + E A Sbjct: 543 ESGLRNLERLIGKICRKAARQYAEKRKDKFLINENA 578 >gi|281204261|gb|EFA78457.1| AAA ATPase domain-containing protein [Polysphondylium pallidum PN500] Length = 907 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E NF S GP Sbjct: 623 VLMYGPPGCGKTLLAKAIASECQANFISVKGP 654 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108 +L GPPG GKT LA +A EL + S S P IA + L + +++ + Sbjct: 294 ILLHGPPGTGKTLLANAIAGELKIPLISISAPEIASGLSGESESKIRGLFASAQEQAPCI 353 Query: 109 LFIDEI 114 +FIDEI Sbjct: 354 VFIDEI 359 >gi|227501007|ref|ZP_03931056.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098] gi|227216780|gb|EEI82178.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098] Length = 655 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +T ++ GQ EA +L ++ + A+ VL VGPPG GKT +A+ VA E Sbjct: 170 KTFKDVAGQEEAKDSLSEIVDFLHKPGKYKEIGAKVPKGVLLVGPPGTGKTLMAKAVAGE 229 Query: 78 LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 V F S SG + A + L +++ ++FIDEI Sbjct: 230 ANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 274 >gi|294813244|ref|ZP_06771887.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] gi|294325843|gb|EFG07486.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] Length = 672 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 180 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 237 >gi|240144375|ref|ZP_04742976.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis L1-82] gi|257203626|gb|EEV01911.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis L1-82] Length = 608 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 202 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 232 >gi|221060450|ref|XP_002260870.1| ATPase [Plasmodium knowlesi strain H] gi|193810944|emb|CAQ42842.1| ATPase, putative [Plasmodium knowlesi strain H] Length = 1133 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L GPPG KT A+ +A E+ +NF S GP I G+ + N+ + V Sbjct: 748 ILLYGPPGCSKTLFAKAIASEINMNFISVKGPEIFSKYVGESEKTIRNIFKKARENNPCV 807 Query: 109 LFIDEIHRLSI 119 +F DEI +++ Sbjct: 808 IFFDEIDSIAV 818 >gi|189203731|ref|XP_001938201.1| replication factor C subunit 4 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187985300|gb|EDU50788.1| replication factor C subunit 4 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 417 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL E T Q L ++++ L H+LF GPPG GKT+ +A+EL Sbjct: 40 RPKTLSEVTAQDNTIQILSRTMQSSN-----LPHMLFYGPPGTGKTSTILALAKEL 90 >gi|156102268|ref|XP_001616827.1| AAA family ATPase [Plasmodium vivax SaI-1] gi|148805701|gb|EDL47100.1| AAA family ATPase, putative [Plasmodium vivax] Length = 1186 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L GPPG KT A+ +A E+ +NF S GP I G+ + N+ + V Sbjct: 816 ILLYGPPGCSKTLFAKAIASEINMNFISVKGPEIFSKYVGESEKTIRNIFKKARENNPCV 875 Query: 109 LFIDEIHRLSI 119 +F DEI +++ Sbjct: 876 IFFDEIDSIAV 886 >gi|148381465|ref|YP_001256006.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str. ATCC 3502] gi|153933552|ref|YP_001385840.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str. ATCC 19397] gi|153937590|ref|YP_001389247.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str. Hall] gi|168180994|ref|ZP_02615658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC 2916] gi|226950981|ref|YP_002806072.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str. Kyoto] gi|148290949|emb|CAL85085.1| cell division protein [Clostridium botulinum A str. ATCC 3502] gi|152929596|gb|ABS35096.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str. ATCC 19397] gi|152933504|gb|ABS39003.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str. Hall] gi|182668051|gb|EDT80030.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC 2916] gi|226843941|gb|ACO86607.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str. Kyoto] gi|322807850|emb|CBZ05425.1| cell division protein FtsH [Clostridium botulinum H04402 065] Length = 601 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225 >gi|146302995|ref|YP_001190311.1| AAA family ATPase [Metallosphaera sedula DSM 5348] gi|145701245|gb|ABP94387.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348] Length = 768 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 24/42 (57%) Query: 49 ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 A E +L GPPG GKT LA+ VA E G NF + GP + Sbjct: 493 AGVEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEV 534 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108 ++ GPPG+GKT LA+ VA E F S +GP I G+ L + ED + Sbjct: 228 IMLYGPPGVGKTLLAKAVANETESYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 287 Query: 109 LFIDEIHRLSIIVEEIL 125 +FIDE+ ++ +E++ Sbjct: 288 IFIDEVDAIAPKRDEVI 304 >gi|159899548|ref|YP_001545795.1| ATP-dependent metalloprotease FtsH [Herpetosiphon aurantiacus ATCC 23779] gi|159892587|gb|ABX05667.1| ATP-dependent metalloprotease FtsH [Herpetosiphon aurantiacus ATCC 23779] Length = 651 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T + GQ EA +L +E A+ A VL VGPPG GKT L++ VA E Sbjct: 187 TFADVAGQEEAKQDLTEVVEFLKFPEKFAQLGARIPRGVLMVGPPGTGKTLLSRAVAGEA 246 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 247 GVPFFSISG 255 >gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276] gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276] Length = 373 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP +L++ + ++ FIEA + L H+LF GPPG GKT+ +AR L Sbjct: 57 VEKYRPVSLDDVVSHKDITGTIEKFIEAGR-----LPHLLFYGPPGTGKTSTVLALARRL 111 >gi|331217656|ref|XP_003321506.1| ATPase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309300496|gb|EFP77087.1| ATPase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 368 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ +A+E G F S ++ L A L +L + + Sbjct: 135 VLLYGPPGCGKTMLAKTLAKESGAMFINIKPSDLSSKWFGESSKLVAALFSLSQKLQPSI 194 Query: 109 LFIDEI 114 +FIDEI Sbjct: 195 IFIDEI 200 >gi|227522410|ref|ZP_03952459.1| M41 family endopeptidase FtsH [Lactobacillus hilgardii ATCC 8290] gi|227090468|gb|EEI25780.1| M41 family endopeptidase FtsH [Lactobacillus hilgardii ATCC 8290] Length = 717 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 227 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 286 Query: 109 LFIDEI 114 +FIDEI Sbjct: 287 IFIDEI 292 >gi|168183605|ref|ZP_02618269.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Bf] gi|237796986|ref|YP_002864538.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str. 657] gi|182673184|gb|EDT85145.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Bf] gi|229262710|gb|ACQ53743.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str. 657] Length = 601 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225 >gi|167533059|ref|XP_001748210.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773330|gb|EDQ86971.1| predicted protein [Monosiga brevicollis MX1] Length = 291 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 8/75 (10%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLED 105 ++A+ +L GPPG GKT LA+ VA E G F S S +A +A + L Sbjct: 27 SQAVKGLLLFGPPGTGKTMLAKAVATETGATFLNVDSASISSKWYGEAEKMARAVFTLAR 86 Query: 106 R---DVLFIDEIHRL 117 + ++FIDEI L Sbjct: 87 KLAPTIIFIDEIDSL 101 >gi|120436974|ref|YP_862660.1| hypothetical protein GFO_2637 [Gramella forsetii KT0803] gi|117579124|emb|CAL67593.1| conserved hypothetical protein [Gramella forsetii KT0803] Length = 1625 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 + R + + +L + PPG GKTTL + +A LG+ F +GP I Sbjct: 1255 QKRTDRMGLLLLISPPGYGKTTLMEYIANRLGLVFMKINGPAIG 1298 >gi|126179507|ref|YP_001047472.1| AAA family ATPase, CDC48 subfamily protein [Methanoculleus marisnigri JR1] gi|125862301|gb|ABN57490.1| AAA family ATPase, CDC48 subfamily [Methanoculleus marisnigri JR1] Length = 808 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 18/81 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106 VL GPPG GKT +A+ VA E+ +F + SGP I ++ E+R Sbjct: 221 VLLYGPPGTGKTLIAKAVASEVDAHFITLSGPEI-----MSKYYGESEERLREVFEEAQE 275 Query: 107 ---DVLFIDEIHRLSIIVEEI 124 ++FIDEI ++ EE+ Sbjct: 276 NAPSIVFIDEIDSIAPKREEV 296 Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E NF S GP Sbjct: 493 ILLFGPPGTGKTLLAKAVANESESNFISVKGP 524 >gi|58262376|ref|XP_568598.1| DNA replication factor [Cryptococcus neoformans var. neoformans JEC21] gi|57230772|gb|AAW47081.1| DNA replication factor, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 327 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D + RP +L++ + S ++ FIEA + L H+L GPPG GKT+ +A Sbjct: 8 DDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGR-----LPHLLLYGPPGTGKTSTVLALA 62 Query: 76 REL 78 R L Sbjct: 63 RRL 65 >gi|39996908|ref|NP_952859.1| cell division protein FtsH [Geobacter sulfurreducens PCA] gi|39983796|gb|AAR35186.1| cell division protein FtsH [Geobacter sulfurreducens PCA] Length = 614 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223 >gi|34557037|ref|NP_906852.1| zinc metallopeptidase [Wolinella succinogenes DSM 1740] gi|34482752|emb|CAE09752.1| ZINC METALLOPEPTIDASE [Wolinella succinogenes] Length = 648 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL VGPPG GKT LA+ VA E V F S SG + G A+ + +L E + Sbjct: 222 VLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSSFIEMFVGVGASRVRDLFETAKKESPSI 281 Query: 109 LFIDEI 114 +FIDEI Sbjct: 282 IFIDEI 287 >gi|330835721|ref|YP_004410449.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina Ar-4] gi|329567860|gb|AEB95965.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina Ar-4] Length = 768 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 24/42 (57%) Query: 49 ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 A E +L GPPG GKT LA+ VA E G NF + GP + Sbjct: 493 AGVEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEV 534 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 ++ GPPG+GKT LA+ VA E F S +GP I Sbjct: 228 IMLYGPPGVGKTLLAKAVANETESYFTSINGPEI 261 >gi|323357528|ref|YP_004223924.1| ATP-dependent Zn protease [Microbacterium testaceum StLB037] gi|323273899|dbj|BAJ74044.1| ATP-dependent Zn protease [Microbacterium testaceum StLB037] Length = 670 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 47/104 (45%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNL---KVFIEAAKARAEA----LDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA L K F++ K E VL GPPG GKT LA+ VA E Sbjct: 165 TFQDVAGSDEAIEELDEIKEFLKDPKKFEEVGARIPKGVLLYGPPGTGKTLLARAVAGEA 224 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 GV F S SG V A + L ++ ++FIDEI Sbjct: 225 GVPFYSISGSDFVEMFVGVGASRVRDLFNQAKESSPAIIFIDEI 268 >gi|302690912|ref|XP_003035135.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8] gi|300108831|gb|EFJ00233.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8] Length = 376 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80 RP+T+++ + Q S L+ + + L H+LF GPPG GKT+ ++R+L Sbjct: 36 RPKTIDDVSAQEHTVSVLQKALTSTN-----LPHMLFYGPPGTGKTSTILALSRQLFGPD 90 Query: 81 NFRS 84 NFRS Sbjct: 91 NFRS 94 >gi|257468339|ref|ZP_05632433.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium ulcerans ATCC 49185] gi|317062613|ref|ZP_07927098.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium ulcerans ATCC 49185] gi|313688289|gb|EFS25124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium ulcerans ATCC 49185] Length = 416 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +VL +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 115 NVLLIGPTGSGKTLLAQTLARCLSVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 175 DAAERGIIYIDEIDKIA 191 >gi|170760265|ref|YP_001788865.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str. Loch Maree] gi|169407254|gb|ACA55665.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str. Loch Maree] Length = 601 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225 >gi|170755847|ref|YP_001783165.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str. Okra] gi|169121059|gb|ACA44895.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str. Okra] Length = 601 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225 >gi|251798422|ref|YP_003013153.1| Fis family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546048|gb|ACT03067.1| Sigma 54 interacting domain protein [Paenibacillus sp. JDR-2] Length = 567 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 R+VS RP+ +++ GQ + LK + +A + HV+ GPPG+GKT Sbjct: 51 RSVSLTKPLAEKTRPQAMQDIVGQTDGLRALKAALCSANPQ-----HVIIYGPPGVGKTA 105 Query: 70 LAQVVARELGVNFRS 84 A+VV E N S Sbjct: 106 AARVVLEEAKKNPSS 120 >gi|254302055|ref|ZP_04969413.1| DNA-directed DNA polymerase III gamma and tau subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322247|gb|EDK87497.1| DNA-directed DNA polymerase III gamma and tau subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 484 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 35/248 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + E +G+ E +LK+ ++ K+ A A LF GP G+GKTT+A+++A+ GVN Sbjct: 10 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63 Query: 83 RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + +G + + A+ L ++ IDEI L E+I Y +E + Sbjct: 64 LNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120 Query: 134 LDLMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNF-- 182 ++ E N TL I ATT + + + R R +F Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ---RYDFKP 177 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 ++E++K+ ++ K L++TD+ I S G+ R + +L R+ A+ K I Sbjct: 178 LDLEEMKSGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERL---IVTANGKEID 234 Query: 243 REIADAAL 250 +IA+ L Sbjct: 235 LKIAEDTL 242 >gi|121534993|ref|ZP_01666811.1| peptidase S16, lon domain protein [Thermosinus carboxydivorans Nor1] gi|121306406|gb|EAX47330.1| peptidase S16, lon domain protein [Thermosinus carboxydivorans Nor1] Length = 644 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 5/59 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 + L+RP +L E GQ A L+ AK + H++ GPPG+GKTT A++V E Sbjct: 169 MELVRPASLAEIVGQERAIEALR-----AKLASPYPQHLIIYGPPGVGKTTAARLVLEE 222 >gi|28278099|gb|AAH45087.1| Psmc6 protein [Xenopus laevis] Length = 403 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED D+S E G E L+ IE E V L Sbjct: 132 LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 185 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 245 Query: 111 IDEI 114 +DEI Sbjct: 246 MDEI 249 >gi|85057694|ref|YP_456610.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma AYWB] gi|84789799|gb|ABC65531.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma AYWB] Length = 417 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 12/157 (7%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT LA+ +A E V F + SG + G A+ + +L + + Sbjct: 211 VLLEGPPGTGKTLLAKALANEAKVPFYAVSGSEFVEIYVGVGASRIRDLFQKAKTTTPCI 270 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 +FIDEI L + P +E + D + + LS+ +IAAT R+ +L Sbjct: 271 IFIDEIDTLG--AKRKNNPIIESREHDQSLNQLLLEMDGFFKLSQIIIIAATNRIDMLDP 328 Query: 169 PL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203 L RF I++N ++ + I++ AK +++ Sbjct: 329 ALIRPGRFDRKIKINLPNLKAREAILKVHAKNKNISL 365 >gi|332707340|ref|ZP_08427390.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] gi|332353831|gb|EGJ33321.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] Length = 597 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 207 >gi|328703928|ref|XP_001944185.2| PREDICTED: chromosome transmission fidelity protein 18 homolog [Acyrthosiphon pisum] Length = 926 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 17/24 (70%), Positives = 19/24 (79%) Query: 58 LFVGPPGLGKTTLAQVVARELGVN 81 L GPPGLGKTTLA +VAR+ G N Sbjct: 354 LLCGPPGLGKTTLAHLVARQAGYN 377 >gi|325291428|ref|YP_004267609.1| Sigma 54 interacting domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966829|gb|ADY57608.1| Sigma 54 interacting domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 640 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I +LRP+ EE GQ A L AK H+L GPPG+GKT+ A+ VA E Sbjct: 175 IDVLRPKRPEEIVGQENAMRGL-----LAKLATPYPQHILIYGPPGVGKTSAAR-VALET 228 Query: 79 GVNFRSTS 86 F++ S Sbjct: 229 VKQFKNAS 236 >gi|310820095|ref|YP_003952453.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella aurantiaca DW4/3-1] gi|309393167|gb|ADO70626.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] Length = 425 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 29/133 (21%) Query: 15 EDADISLLRPRTL-----EEFTGQVEACSNLKVFIEAAKARAEAL----------DHVLF 59 +D I + RP + E GQ A L V + R E+ ++L Sbjct: 59 KDTKIRIPRPSEIKSILDEYVVGQDRAKKVLSVAVHNHYKRIESKVQMDDVELQKSNILL 118 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------ED 105 +GP G GKT LAQ +AR L V F + +AG D+ ++ NL Sbjct: 119 LGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQ 178 Query: 106 RDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 179 RGIVYIDEIDKIA 191 >gi|284165841|ref|YP_003404120.1| ATPase AAA [Haloterrigena turkmenica DSM 5511] gi|284015496|gb|ADB61447.1| AAA family ATPase, CDC48 subfamily [Haloterrigena turkmenica DSM 5511] Length = 754 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ +F + SGP I Sbjct: 228 VLLHGPPGTGKTLMAKAVANEIDAHFETISGPEI 261 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A VL GPPG GKT LA+ VA E NF S GP Sbjct: 496 QAAKGVLMYGPPGTGKTLLAKAVANEAQSNFISIKGP 532 >gi|282850556|ref|ZP_06259935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella parvula ATCC 17745] gi|282580049|gb|EFB85453.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella parvula ATCC 17745] Length = 417 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 +VLF+GP G GKT LAQ +A+ L V F + +AG + + N+ Sbjct: 110 NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDI 169 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 170 ARAERGIIYIDEIDKIA 186 >gi|323340114|ref|ZP_08080379.1| cell division protein FtsH [Lactobacillus ruminis ATCC 25644] gi|323092491|gb|EFZ35098.1| cell division protein FtsH [Lactobacillus ruminis ATCC 25644] Length = 719 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 237 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPSI 296 Query: 109 LFIDEI 114 +FIDEI Sbjct: 297 IFIDEI 302 >gi|229819199|ref|YP_002880725.1| ATP-dependent metalloprotease FtsH [Beutenbergia cavernae DSM 12333] gi|229565112|gb|ACQ78963.1| ATP-dependent metalloprotease FtsH [Beutenbergia cavernae DSM 12333] Length = 684 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 7/91 (7%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFI-EAAKARA---EALDH 56 MM+ +R V+ E+ +++ ++E VE +K F+ E AK +A + Sbjct: 148 MMNFGKSKARQVNVENPEVTFADVAGVDE---AVEELVEIKEFLSEPAKFQAVGAKIPKG 204 Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT +A+ VA E GV F S SG Sbjct: 205 VLLYGPPGTGKTLIARAVAGEAGVPFYSISG 235 >gi|218289109|ref|ZP_03493345.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218240692|gb|EED07871.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 329 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 37/181 (20%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-AKAGDLAALL---TNLEDRD---- 107 H++F G PG GKTT+A+++AR G ++ + DL T + R+ Sbjct: 105 HMIFYGNPGTGKTTVARILARMFHECGLLEKGHLVEVERADLVGEYIGHTAQKTREQIQK 164 Query: 108 ----VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 VLFIDE + L+ E + L AMED + +L+V R ++ LS Sbjct: 165 ALGGVLFIDEAYSLARGGEKDFGREAIDCLVKAMEDHKHELIVILAGYEREMRWFLS--- 221 Query: 156 LIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214 TNP L RF I I Y +E L I ++ +T EA E A+R Sbjct: 222 -----------TNPGLPSRFPIQILFPDYGVEQLVQIAKKTLATRDYRMTAEA--EWALR 268 Query: 215 S 215 + Sbjct: 269 N 269 >gi|91761999|ref|ZP_01263964.1| ATP-dependent clp proteinase regulatory chain X [Candidatus Pelagibacter ubique HTCC1002] gi|91717801|gb|EAS84451.1| ATP-dependent clp proteinase regulatory chain X [Candidatus Pelagibacter ubique HTCC1002] Length = 422 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 NILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNV 169 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 170 EKAQRGIVYIDEVDKIS 186 >gi|86607354|ref|YP_476117.1| cell division protein FtsH [Synechococcus sp. JA-3-3Ab] gi|86555896|gb|ABD00854.1| cell division protein FtsH [Synechococcus sp. JA-3-3Ab] Length = 638 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 235 >gi|46579748|ref|YP_010556.1| ATP-dependent protease La [Desulfovibrio vulgaris str. Hildenborough] gi|81830450|sp|Q72CE6|LON_DESVH RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|46449163|gb|AAS95815.1| ATP-dependent protease La [Desulfovibrio vulgaris str. Hildenborough] gi|311233538|gb|ADP86392.1| ATP-dependent protease La [Desulfovibrio vulgaris RCH1] Length = 821 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 89/228 (39%), Gaps = 67/228 (29%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+LA+ VA+ G F R + G V +A G + L Sbjct: 364 LCLVGPPGVGKTSLAKSVAKATGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 423 Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ + LF +DEI ++S + E+L P D LD+ Sbjct: 424 RVKHNNPLFCLDEIDKMSTDFRGDPSSALLEVLDPEQNSTFNDHYLDM-----------D 472 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198 +LS+ I + + PLQDR I IRL Y E E K + G Sbjct: 473 YDLSQVFFITTANSLHSIPLPLQDRMEI-IRLPGYLETEKRRIAHDFLLPKQVEAHGLAA 531 Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 + L ++D A EI +R + A + + REIA Sbjct: 532 SNLRISDNAVLEI-----------------IRSYTREAGVRNLEREIA 562 >gi|20090664|ref|NP_616739.1| hypothetical protein MA1813 [Methanosarcina acetivorans C2A] gi|19915711|gb|AAM05219.1| hypothetical protein MA_1813 [Methanosarcina acetivorans C2A] Length = 764 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79 E+ G +A S ++ IE E D VL GPPG GKT LA+ VA E Sbjct: 216 EDLGGLKDAISKVREMIELPLKHPELFDRLGIDAPKGVLLQGPPGTGKTMLAKAVANESD 275 Query: 80 VNFRSTSGPVI 90 F S +GP I Sbjct: 276 AYFISINGPEI 286 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 20/83 (24%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----- 106 EA VL GPPG GKT LA+ +A E NF + AK DL + ++ Sbjct: 521 EAPKGVLLYGPPGTGKTLLAKAIAHESDANF------ITAKGSDLLSKWYGESEKRIAEV 574 Query: 107 ---------DVLFIDEIHRLSII 120 ++F+DE+ L+ I Sbjct: 575 FTRARQVAPSIIFLDELDSLAPI 597 >gi|331701915|ref|YP_004398874.1| ATP-dependent metalloprotease FtsH [Lactobacillus buchneri NRRL B-30929] gi|329129258|gb|AEB73811.1| ATP-dependent metalloprotease FtsH [Lactobacillus buchneri NRRL B-30929] Length = 711 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 226 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 285 Query: 109 LFIDEI 114 +FIDEI Sbjct: 286 IFIDEI 291 >gi|330807699|ref|YP_004352161.1| ATP-dependent protease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375807|gb|AEA67157.1| ATP-dependent protease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 804 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 386 VLLVGPPGVGKTSVGKSIAESLGRPFYRFSLGGMRDEAEIKGHRRTYIGAQPGKLVQALK 445 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 446 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 494 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++LS+ + + + PL DR + IRL+ Y E+ I +R Sbjct: 495 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKVAIAKR 539 >gi|313114092|ref|ZP_07799644.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Faecalibacterium cf. prausnitzii KLE1255] gi|310623501|gb|EFQ06904.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Faecalibacterium cf. prausnitzii KLE1255] Length = 440 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 28/132 (21%) Query: 15 EDADISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKAR---AEALD------HVLFV 60 ++ DI++L P ++E GQ EA L V + R + D +VL + Sbjct: 75 DNLDINILTPAEIKEGLDQYVIGQDEAKRVLAVSVYNHYKRILSGKGSDVELQKSNVLLL 134 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV----- 108 GP G+GKT LAQ +A+ LGV F + +AG D+ +L L D DV Sbjct: 135 GPSGVGKTLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADFDVQKAQI 194 Query: 109 --LFIDEIHRLS 118 ++IDEI +++ Sbjct: 195 GIIYIDEIDKIT 206 >gi|260203078|ref|ZP_05770569.1| hypothetical protein MtubK8_01992 [Mycobacterium tuberculosis K85] gi|289572521|ref|ZP_06452748.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289536952|gb|EFD41530.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length = 573 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 14/78 (17%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57 RE LL++ ++ D I L R + E +V A +KV A+ H+ Sbjct: 279 RERLLAQAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 330 Query: 58 LFVGPPGLGKTTLAQVVA 75 +F GPPG GKTT+A+VVA Sbjct: 331 IFTGPPGTGKTTIARVVA 348 >gi|238923370|ref|YP_002936886.1| ATP-dependent protease ATP-binding subunit [Eubacterium rectale ATCC 33656] gi|259491258|sp|C4ZGF5|CLPX_EUBR3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238875045|gb|ACR74752.1| ATP-dependent protease ATP-binding subunit [Eubacterium rectale ATCC 33656] Length = 423 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 28/135 (20%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD---------HVLFVGPP 63 DI+L+ P L+ F GQ +A L V + R A D ++L +GP Sbjct: 62 DINLVTPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRVLAGDTSDVELQKSNILMLGPT 121 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------VL 109 G GKT LAQ +AR + V F + +AG D+ +L L D D ++ Sbjct: 122 GSGKTLLAQTLARVINVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDIERAEHGII 181 Query: 110 FIDEIHRLSIIVEEI 124 +IDEI +++ E + Sbjct: 182 YIDEIDKITKKSENV 196 >gi|221636295|ref|YP_002524171.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159] gi|221157985|gb|ACM07103.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159] Length = 632 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 15/103 (14%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83 P LE V +K F E EA+ +L VGPPG GK+ LAQ ++ E V F Sbjct: 120 PEVLESARRIVTLLKGIKEFKEMG---GEAIRGLLLVGPPGTGKSYLAQCISTEANVPFG 176 Query: 84 STSGPVIAK----AGDLAALLTNLEDRD--------VLFIDEI 114 S P +L ++ + R +LFIDEI Sbjct: 177 YASAPSFQNMFFGVSNLRIMMLYRKARKLARKYGACILFIDEI 219 >gi|242279265|ref|YP_002991394.1| ATP-dependent metalloprotease FtsH [Desulfovibrio salexigens DSM 2638] gi|242122159|gb|ACS79855.1| ATP-dependent metalloprotease FtsH [Desulfovibrio salexigens DSM 2638] Length = 689 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 192 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 222 >gi|241997548|ref|XP_002433423.1| katanin, putative [Ixodes scapularis] gi|215490846|gb|EEC00487.1| katanin, putative [Ixodes scapularis] Length = 495 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 252 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFHAPST 311 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 312 IFIDEIDSL 320 >gi|254169220|ref|ZP_04876054.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] gi|289596750|ref|YP_003483446.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] gi|197621816|gb|EDY34397.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] gi|289534537|gb|ADD08884.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] Length = 738 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 16/121 (13%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLA 71 LL T E+ G + ++ IE E + VL GPPG GKT +A Sbjct: 180 ELLEHVTYEDIGGLKDELQKVREMIELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLIA 239 Query: 72 QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123 + VA E +F + +GP I L + N + ++FIDEI ++ EE Sbjct: 240 KAVANESNAHFYAINGPEIMSKFYGQSEERLREIFQNAQKNAPSIIFIDEIDSIAPKREE 299 Query: 124 I 124 + Sbjct: 300 V 300 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E NF S GP + Sbjct: 502 ILLYGPPGTGKTLLAKAVATESEANFISIKGPEV 535 >gi|163759317|ref|ZP_02166403.1| ATP-dependent Clp protease, ATP-binding subunit protein [Hoeflea phototrophica DFL-43] gi|162283721|gb|EDQ34006.1| ATP-dependent Clp protease, ATP-binding subunit protein [Hoeflea phototrophica DFL-43] Length = 426 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 25/118 (21%) Query: 26 TLEEFT-GQVEACSNLKVFIEAAKARAE----------ALDHVLFVGPPGLGKTTLAQVV 74 TL+E+ GQ +A L V + R A ++L VGP G GKT LAQ + Sbjct: 75 TLDEYVIGQHQAKKILSVAVHNHYKRLNHSSKSGEVELAKSNILLVGPTGCGKTYLAQTL 134 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118 AR + V F + +AG + + N+ R +++IDE+ ++S Sbjct: 135 ARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDEVDKIS 192 >gi|145296692|ref|YP_001139513.1| hypothetical protein cgR_2597 [Corynebacterium glutamicum R] gi|140846612|dbj|BAF55611.1| hypothetical protein [Corynebacterium glutamicum R] Length = 853 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 35/70 (50%), Gaps = 9/70 (12%) Query: 26 TLEEFTGQVEACSNL---KVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77 T + G EA L K F+E R EAL VL GPPG GKT LA+ VA E Sbjct: 163 TFADVAGAEEAVDELHEIKDFLEDP-TRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 221 Query: 78 LGVNFRSTSG 87 GV F S SG Sbjct: 222 AGVPFYSISG 231 >gi|68076493|ref|XP_680166.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56501060|emb|CAH98427.1| conserved hypothetical protein [Plasmodium berghei] Length = 931 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG KT A+ +A E+ +NF S GP I Sbjct: 621 ILLYGPPGCSKTLFAKAIASEINMNFISVKGPEI 654 >gi|150388894|ref|YP_001318943.1| ATP-dependent protease La [Alkaliphilus metalliredigens QYMF] gi|149948756|gb|ABR47284.1| ATP-dependent protease La [Alkaliphilus metalliredigens QYMF] Length = 783 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 37/174 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 V VGPPG+GKT++A+ +AR L F R + G V +A G + + + Sbjct: 356 VCLVGPPGVGKTSIAKSIARSLNRKFVRMSLGGVRDEAEIRGHRRTYVGAIPGRIISSMR 415 Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 +E ++ LF +DEI +L + + E+L P D D + E P +LS Sbjct: 416 QVESKNPLFLLDEIDKLAGDFRGDPAAALLEVLDPEQNDDFTDHYL-EMP------FDLS 468 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGL 201 + I + + PL DR + IR+ Y E+ K +V + K+ GL Sbjct: 469 KVLFITTANSLDTIPRPLLDRMEV-IRIAGYTEEEKVKIAEKYLVPKQLKVHGL 521 >gi|114331375|ref|YP_747597.1| ATP-dependent metalloprotease FtsH [Nitrosomonas eutropha C91] gi|114308389|gb|ABI59632.1| membrane protease FtsH catalytic subunit [Nitrosomonas eutropha C91] Length = 617 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 +L VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 199 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARQMAPAI 258 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 259 IFIDELDAL 267 >gi|159107696|ref|XP_001704125.1| ATPase, AAA family [Giardia lamblia ATCC 50803] gi|157432177|gb|EDO76451.1| ATPase, AAA family [Giardia lamblia ATCC 50803] Length = 509 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 14/140 (10%) Query: 14 QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARA---EALDHVLFVGPPGLGKTT 69 QE +S+ LRP T++E G S I ++ L ++ GPPG GKT+ Sbjct: 92 QEAMCLSMRLRPTTIDEIIGNHHILSLTDGVISRIYEQSRTTHVLQSIIITGPPGTGKTS 151 Query: 70 LAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNL---------EDRDVLFIDEIHRLSI 119 A++ A+ ++R P A +L + + R LF+DE HR + Sbjct: 152 FARLYAKSFDPSYRLIEFKPGQATVAELNKVTERIYTDRANSLTSARVCLFVDEAHRCTK 211 Query: 120 IVEEILYPAMEDFQLDLMVG 139 ++ L A+E+ L L++ Sbjct: 212 AQQDRLLSAVEEGVLTLILA 231 >gi|325115165|emb|CBZ50721.1| putative replication factor c subunit [Neospora caninum Liverpool] Length = 347 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 54/242 (22%), Positives = 98/242 (40%), Gaps = 50/242 (20%) Query: 5 EGLLSRNVSQEDADISLL--------RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56 E L N +EDA + L RP TL++ G + L++ A+ + H Sbjct: 9 ENLPPDNRGKEDASPTTLDSIWIEKYRPETLDDVVGNDQVMRRLRII-----AKEGNMPH 63 Query: 57 VLFVGPPGLGKTTLAQVVARE-LGVNFRSTSGPVIAKAGDLAALLTN------LEDRD-- 107 ++ GPPG GKT+ + ++ LG +R+ + + A ++ E RD Sbjct: 64 LMLAGPPGTGKTSSVLCLCKQLLGSRWRACTLELNASDERTIDVIREKVKHFAKEKRDLP 123 Query: 108 -----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 ++ +DE+ ++ ++ L ME F + +RF L A Sbjct: 124 PGRHKIVILDEVDAMTEAAQQALRRIMEQFS----------------DTTRFAL--ACNS 165 Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTI--VQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 + PLQ R I L F +++D + + +++ + + VTD+ I + G R Sbjct: 166 SASVIEPLQSRCAI---LRFRKLDDAQLVRRLRQVCSMEAVQVTDDGMEAIVFCADGDMR 222 Query: 221 IA 222 A Sbjct: 223 SA 224 >gi|300121635|emb|CBK22153.2| unnamed protein product [Blastocystis hominis] Length = 441 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAK-AGDLAALLTNL------EDRDV 108 +L GPPG GK+ LA+ VA + F S +S +++K G+ A L+ NL V Sbjct: 177 ILLYGPPGTGKSYLAKAVASQADSTFMSVSSADLVSKWQGETARLVKNLFQLARKNKPTV 236 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 237 IFIDEIDSL 245 >gi|298505921|gb|ADI84644.1| cell division ATP-dependent zinc protease FtsH [Geobacter sulfurreducens KN400] Length = 610 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 189 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 219 >gi|259488300|tpe|CBF87639.1| TPA: AAA family ATPase/60S ribosome export protein Rix7, putative (AFU_orthologue; AFUA_1G09210) [Aspergillus nidulans FGSC A4] Length = 729 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108 VL GPPG GKT +A A ELGV F S S P I +G+ AL + E+ + Sbjct: 202 VLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEAKRLAPCL 261 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 262 IFIDEIDAIT 271 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 506 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 537 >gi|253581497|ref|ZP_04858722.1| ATP-dependent protease ATP-binding subunit [Fusobacterium varium ATCC 27725] gi|251836567|gb|EES65102.1| ATP-dependent protease ATP-binding subunit [Fusobacterium varium ATCC 27725] Length = 416 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +VL +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 115 NVLLIGPTGSGKTLLAQTLARCLSVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 175 EAAERGIIYIDEIDKIA 191 >gi|291087305|ref|ZP_06346033.2| ATP-dependent metalloprotease FtsH [Clostridium sp. M62/1] gi|291075290|gb|EFE12654.1| ATP-dependent metalloprotease FtsH [Clostridium sp. M62/1] Length = 597 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 179 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 209 >gi|223974153|gb|ACN31264.1| unknown [Zea mays] Length = 234 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD 107 K + +D +L+ GPPG GK++L +A L + + DL LL N+++R Sbjct: 126 KLKQSIIDDLLY-GPPGTGKSSLIAAMANHLRFDIYDLELTAVTSNSDLRRLLVNMDNRS 184 Query: 108 VLFIDEI 114 +L I++I Sbjct: 185 ILVIEDI 191 >gi|260822034|ref|XP_002606408.1| hypothetical protein BRAFLDRAFT_67659 [Branchiostoma floridae] gi|229291749|gb|EEN62418.1| hypothetical protein BRAFLDRAFT_67659 [Branchiostoma floridae] Length = 997 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 32/187 (17%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S+E+ D++ R E+ G + + + FI ++ R +L F GPPG+GKT++A Sbjct: 526 SEENLDLARARAVLEEDHYGMDDVKNRILEFIAVSQLRGSVQGKILCFYGPPGVGKTSIA 585 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEIH 115 + +AR L FR + G V A G + L + + L IDE+ Sbjct: 586 RSIARALSREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKVIQCLKKTKTENPLVLIDEVD 645 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ S + E+L P LD + V ++LS+ I + + Sbjct: 646 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVSVDLSKVLFICTANIIDTIP 698 Query: 168 NPLQDRF 174 PL+DR Sbjct: 699 EPLRDRM 705 >gi|254169043|ref|ZP_04875881.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] gi|197622013|gb|EDY34590.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] Length = 738 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 16/121 (13%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLA 71 LL T E+ G + ++ IE E + VL GPPG GKT +A Sbjct: 180 ELLEHVTYEDIGGLKDELQKVREMIELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLIA 239 Query: 72 QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123 + VA E +F + +GP I L + N + ++FIDEI ++ EE Sbjct: 240 KAVANESNAHFYAINGPEIMSKFYGQSEERLREIFQNAQKNAPSIIFIDEIDSIAPKREE 299 Query: 124 I 124 + Sbjct: 300 V 300 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E NF S GP + Sbjct: 502 ILLYGPPGTGKTLLAKAVATESEANFISIKGPEV 535 >gi|220907269|ref|YP_002482580.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] gi|219863880|gb|ACL44219.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] Length = 612 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223 >gi|187777493|ref|ZP_02993966.1| hypothetical protein CLOSPO_01068 [Clostridium sporogenes ATCC 15579] gi|187774421|gb|EDU38223.1| hypothetical protein CLOSPO_01068 [Clostridium sporogenes ATCC 15579] Length = 601 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225 >gi|218440504|ref|YP_002378833.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] gi|218173232|gb|ACK71965.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] Length = 616 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 197 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 227 >gi|134283372|ref|ZP_01770072.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305] gi|134245121|gb|EBA45215.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305] Length = 666 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 266 IFIDELDALGKV 277 >gi|153006261|ref|YP_001380586.1| ATP-dependent protease La [Anaeromyxobacter sp. Fw109-5] gi|152029834|gb|ABS27602.1| ATP-dependent protease La [Anaeromyxobacter sp. Fw109-5] Length = 810 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDL-AALLTNLE 104 + FVGPPG+GKT+LA+ +AR + F R + G V +A G L ++ +L+ Sbjct: 361 LCFVGPPGVGKTSLARSIARAMNRKFVRISLGGVRDEAEIRGHRRTYIGALPGKIIQSLK 420 Query: 105 D----RDVLFIDEIHRLSI--------IVEEILYPA----MEDFQLDLMVGEGPSARSVK 148 V +DE+ ++S + E+L P D LDL Sbjct: 421 KAGSGNPVFLLDEVDKMSTDFRGDPSAALLEVLDPEQNHNFNDHYLDL-----------D 469 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 +LS+ I +G + PLQDR + IR+ Y + +I QR Sbjct: 470 YDLSKVMFICTANTMGGIPGPLQDRMEV-IRIAGYTDLEKLSIAQR 514 >gi|121597791|ref|YP_989640.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei SAVP1] gi|121225589|gb|ABM49120.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei SAVP1] Length = 852 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 392 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 451 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 452 IFIDELDALGKV 463 >gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit, putative [Tribolium castaneum] gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum] Length = 355 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPRT+ + Q EA S L+ I A L ++LF GPPG GKT+ AR+L Sbjct: 37 RPRTVSDVVEQSEAVSVLQQCISGAD-----LPNLLFYGPPGTGKTSTILAAARQL 87 >gi|19705135|ref|NP_602630.1| DNA polymerase III subunits gamma and tau [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328310|ref|ZP_06870839.1| DNA polymerase III gamma and tau [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713068|gb|AAL93929.1| DNA polymerase III subunits gamma and tau [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154614|gb|EFG95402.1| DNA polymerase III gamma and tau [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 484 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-VN 81 RP + E +G+ E +LK+ ++ K+ A A LF GP G+GKTT+A+++A+ + +N Sbjct: 10 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAKGVNCLN 65 Query: 82 FRSTSGPV 89 + T P Sbjct: 66 LKETGEPC 73 >gi|15672003|ref|NP_266177.1| hypothetical protein L0204 [Lactococcus lactis subsp. lactis Il1403] gi|281490520|ref|YP_003352500.1| cell division protein FtsH [Lactococcus lactis subsp. lactis KF147] gi|1169754|sp|P46469|FTSH_LACLA RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|12722858|gb|AAK04119.1|AE006241_8 cell division protein FtsH [Lactococcus lactis subsp. lactis Il1403] gi|44027|emb|CAA48877.1| Tma protein [Lactococcus lactis] gi|281374338|gb|ADA63871.1| Cell division protein FtsH [Lactococcus lactis subsp. lactis KF147] gi|326405619|gb|ADZ62690.1| cell division protease FtsH [Lactococcus lactis subsp. lactis CV56] Length = 695 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 229 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|134118756|ref|XP_771881.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var. neoformans B-3501A] gi|50254485|gb|EAL17234.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var. neoformans B-3501A] Length = 327 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 D + RP +L++ + S ++ FIEA + L H+L GPPG GKT+ +A Sbjct: 8 DDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGR-----LPHLLLYGPPGTGKTSTVLALA 62 Query: 76 REL 78 R L Sbjct: 63 RRL 65 >gi|307150022|ref|YP_003885406.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] gi|306980250|gb|ADN12131.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] Length = 616 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 197 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 227 >gi|302349009|ref|YP_003816647.1| Cell division control protein 48, AAA family [Acidilobus saccharovorans 345-15] gi|302329421|gb|ADL19616.1| Cell division control protein 48, AAA family [Acidilobus saccharovorans 345-15] Length = 736 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 18/81 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106 +L GPPG GKT LA+ +A E+G F + +GP I ++ E+R Sbjct: 230 ILLYGPPGTGKTLLAKALANEIGAYFIAINGPEI-----MSKFYGESEERLREVFKEAQE 284 Query: 107 ---DVLFIDEIHRLSIIVEEI 124 ++FIDEI ++ EE+ Sbjct: 285 NAPSIIFIDEIDSIAPKREEV 305 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E G NF + GP Sbjct: 506 VLLFGPPGTGKTMLAKAVATESGANFIAIRGP 537 >gi|239980352|ref|ZP_04702876.1| cell division protein ftsH-like protein [Streptomyces albus J1074] gi|291452215|ref|ZP_06591605.1| cell division protein FtsH [Streptomyces albus J1074] gi|291355164|gb|EFE82066.1| cell division protein FtsH [Streptomyces albus J1074] Length = 669 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226 >gi|242279531|ref|YP_002991660.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio salexigens DSM 2638] gi|242122425|gb|ACS80121.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio salexigens DSM 2638] Length = 417 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N + Sbjct: 113 NILLIGPTGSGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDI 172 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 173 DAASRGIIYIDEIDKIS 189 >gi|237843887|ref|XP_002371241.1| replication factor C subunit, putative [Toxoplasma gondii ME49] gi|211968905|gb|EEB04101.1| replication factor C subunit, putative [Toxoplasma gondii ME49] gi|221483809|gb|EEE22121.1| replication factor C subunit, putative [Toxoplasma gondii GT1] gi|221504190|gb|EEE29865.1| replication factor C subunit, putative [Toxoplasma gondii VEG] Length = 336 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 42/220 (19%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77 I RP TL++ G + L++ AR + H++ GPPG GKT+ + ++ Sbjct: 35 IEKYRPETLDDVVGNDQVMRRLRII-----AREGNMPHLMLAGPPGTGKTSSVLCLCKQL 89 Query: 78 LGVNFRSTSGPVIAKAGDLAALLTN------LEDRD-------VLFIDEIHRLSIIVEEI 124 LG +R+ + + A ++ E RD ++ +DE+ ++ ++ Sbjct: 90 LGSRWRAYTLELNASDERTIDVIREKVKHFAKEKRDLPAGRHKIVILDEVDAMTEAAQQA 149 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 L ME F + +RF L A + PLQ R I L F + Sbjct: 150 LRRIMEQFS----------------DTTRFAL--ACNSSASVIEPLQSRCAI---LRFRK 188 Query: 185 IEDLKTI--VQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 ++D + + +++ + L VTD+ I + G R A Sbjct: 189 LDDSQLVRRLRQVCAMEALQVTDDGIEAIVFCADGDMRSA 228 >gi|199598785|ref|ZP_03212197.1| ATP-dependent Zn protease [Lactobacillus rhamnosus HN001] gi|199590290|gb|EDY98384.1| ATP-dependent Zn protease [Lactobacillus rhamnosus HN001] Length = 716 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPSI 284 Query: 109 LFIDEI 114 +FIDEI Sbjct: 285 IFIDEI 290 >gi|254413594|ref|ZP_05027364.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] gi|196179701|gb|EDX74695.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] Length = 612 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223 >gi|218246670|ref|YP_002372041.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|257059712|ref|YP_003137600.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] gi|218167148|gb|ACK65885.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|256589878|gb|ACV00765.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] Length = 640 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 223 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 253 >gi|167742526|ref|ZP_02415300.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 14] Length = 666 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 266 IFIDELDALGKV 277 >gi|163868072|ref|YP_001609276.1| ATP-dependent protease ATP-binding subunit ClpX [Bartonella tribocorum CIP 105476] gi|189082484|sp|A9ISA8|CLPX_BART1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|161017723|emb|CAK01281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella tribocorum CIP 105476] Length = 424 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|115379417|ref|ZP_01466519.1| hypothetical protein STIAU_1902 [Stigmatella aurantiaca DW4/3-1] gi|115363581|gb|EAU62714.1| hypothetical protein STIAU_1902 [Stigmatella aurantiaca DW4/3-1] Length = 1833 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 26/44 (59%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 R + + +L + PPG GKTTL + VA LG+ F +GP + A Sbjct: 1285 RTDRMGMLLLMSPPGYGKTTLMEYVASRLGLTFVKVNGPALGHA 1328 >gi|53716929|ref|YP_105706.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei ATCC 23344] gi|124383118|ref|YP_001024213.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei NCTC 10229] gi|126447417|ref|YP_001078380.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei NCTC 10247] gi|254200513|ref|ZP_04906878.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei FMH] gi|254204538|ref|ZP_04910891.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei JHU] gi|254356833|ref|ZP_04973108.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei 2002721280] gi|52422899|gb|AAU46469.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei ATCC 23344] gi|124291138|gb|ABN00408.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei NCTC 10229] gi|126240271|gb|ABO03383.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei NCTC 10247] gi|147748125|gb|EDK55200.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei FMH] gi|147754124|gb|EDK61188.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei JHU] gi|148025860|gb|EDK83983.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei 2002721280] Length = 666 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 266 IFIDELDALGKV 277 >gi|19553890|ref|NP_601892.1| cell division protein [Corynebacterium glutamicum ATCC 13032] gi|62391533|ref|YP_226935.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Corynebacterium glutamicum ATCC 13032] gi|75368391|sp|Q6M2F0|FTSH_CORGL RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|41326875|emb|CAF20719.1| CELL-DIVISION PROTEIN (ATP-DEPENDENT ZN METALLOPEPTIDASE) [Corynebacterium glutamicum ATCC 13032] Length = 853 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 35/70 (50%), Gaps = 9/70 (12%) Query: 26 TLEEFTGQVEACSNL---KVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77 T + G EA L K F+E R EAL VL GPPG GKT LA+ VA E Sbjct: 163 TFADVAGAEEAVDELHEIKDFLEDP-TRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 221 Query: 78 LGVNFRSTSG 87 GV F S SG Sbjct: 222 AGVPFYSISG 231 >gi|71020215|ref|XP_760338.1| hypothetical protein UM04191.1 [Ustilago maydis 521] gi|46099962|gb|EAK85195.1| hypothetical protein UM04191.1 [Ustilago maydis 521] Length = 1142 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L G PG GKT LA VA+E G+NF S GP I G + +L DR V Sbjct: 809 LLLYGYPGCGKTLLASAVAKECGLNFISVKGPEILNKYIGASEKSVRDLFDRAQAAKPCV 868 Query: 109 LFIDEIHRLS 118 LF DE ++ Sbjct: 869 LFFDEFDSIA 878 >gi|325963519|ref|YP_004241425.1| AAA+ family ATPase [Arthrobacter phenanthrenivorans Sphe3] gi|323469606|gb|ADX73291.1| AAA+ family ATPase [Arthrobacter phenanthrenivorans Sphe3] Length = 346 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 117/282 (41%), Gaps = 66/282 (23%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKA-----------RAEAL------DHVLFVGPPGLGK 67 R L E +++A L+ E +A +A L H++F+G PG GK Sbjct: 46 RPLSELQAELDALVGLETVKEQVRALVALLQVQARRKAHGLPEVATSQHLVFLGNPGTGK 105 Query: 68 TTLAQVVA---RELGVNFRST------SGPVIAKAGDLAALLTNLEDR---DVLFIDEIH 115 TT+A+++A R +G+ + SG V G A + R VLFIDE + Sbjct: 106 TTVARLLAEMYRAVGLLQKGHLVEVDRSGLVGQYVGATAIKTDRVIRRALDGVLFIDEAY 165 Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF--------TLIAATTRVG--- 164 L A ED ++D GP A +++ L R ++A R+ Sbjct: 166 AL----------APEDGRMDF----GPEA--IEVLLKRMEDHRHRLVVIVAGYPRLMESF 209 Query: 165 LLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223 LL+NP L+ RF I Y ++ L+TI + L T E + + +R T AG Sbjct: 210 LLSNPGLRSRFAREITFPDYSVDALQTIFHQ--MLAQHEYTLEPSADQMLRRILTGLHAG 267 Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDK-MGFDQLD 264 D A+T+ + + LRL++DK D LD Sbjct: 268 ------EDSGNARFARTLFEQALNRQALRLSLDKEQSLDTLD 303 >gi|307110057|gb|EFN58294.1| hypothetical protein CHLNCDRAFT_142278 [Chlorella variabilis] Length = 640 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F TSG Sbjct: 233 VLLVGPPGTGKTMLARAIAGEAGVPFFYTSG 263 >gi|289580455|ref|YP_003478921.1| ATPase AAA, CDC48 subfamily [Natrialba magadii ATCC 43099] gi|289530008|gb|ADD04359.1| AAA family ATPase, CDC48 subfamily [Natrialba magadii ATCC 43099] Length = 763 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/36 (55%), Positives = 22/36 (61%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 A + VL GPPG GKT LA+ VA E NF S GP Sbjct: 522 AANGVLLYGPPGTGKTLLAKAVASEAQSNFISVKGP 557 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK---AGDLAALLTNLEDRD-----V 108 VL GPPG GKT +A+ VA E+ F SGP I L + ED V Sbjct: 253 VLLHGPPGTGKTLIAKAVANEIDAFFTDISGPEIMSRYYGESEEQLRSVFEDATENAPAV 312 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 313 VFIDEIDSIA 322 >gi|289422715|ref|ZP_06424555.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptostreptococcus anaerobius 653-L] gi|289156894|gb|EFD05519.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptostreptococcus anaerobius 653-L] Length = 422 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 29/137 (21%) Query: 11 NVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD---------- 55 N +QE+ +++L +P+ + E GQ A L V + R + + Sbjct: 52 NAAQENGEMNLPKPKEMMEILNDYVIGQSGAKKALSVAVYNHYKRIYSENTTGDVEVQKS 111 Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +A+ L V F + +AG + + N+ Sbjct: 112 NILLLGPTGSGKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENIILKLVQAADFDV 171 Query: 104 --EDRDVLFIDEIHRLS 118 + +++IDEI ++S Sbjct: 172 ERAQKGIIYIDEIDKIS 188 >gi|254294161|ref|YP_003060184.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Hirschia baltica ATCC 49814] gi|254042692|gb|ACT59487.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hirschia baltica ATCC 49814] Length = 423 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 172 YNVERAQRGIVYIDEIDKIS 191 >gi|240850275|ref|YP_002971668.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella grahamii as4aup] gi|240267398|gb|ACS50986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella grahamii as4aup] Length = 424 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|269798317|ref|YP_003312217.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Veillonella parvula DSM 2008] gi|294792181|ref|ZP_06757329.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella sp. 6_1_27] gi|294794046|ref|ZP_06759183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella sp. 3_1_44] gi|269094946|gb|ACZ24937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella parvula DSM 2008] gi|294455616|gb|EFG23988.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella sp. 3_1_44] gi|294457411|gb|EFG25773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella sp. 6_1_27] Length = 417 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 +VLF+GP G GKT LAQ +A+ L V F + +AG + + N+ Sbjct: 110 NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDI 169 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 170 ARAERGIIYIDEIDKIA 186 >gi|254172798|ref|ZP_04879472.1| replication factor C large subunit [Thermococcus sp. AM4] gi|214032954|gb|EEB73782.1| replication factor C large subunit [Thermococcus sp. AM4] Length = 498 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTTLAQVVARE 77 + RPR L E Q +A ++ +IEA ++ GPPG+GKTT +A E Sbjct: 6 VEKYRPRKLSEIVNQEKAIEQVRAWIEAWLHGNPPKKKALILAGPPGVGKTTTVYALANE 65 Query: 78 LG 79 G Sbjct: 66 YG 67 >gi|168207908|ref|ZP_02633913.1| ATP-dependent protease [Clostridium perfringens E str. JGS1987] gi|170660782|gb|EDT13465.1| ATP-dependent protease [Clostridium perfringens E str. JGS1987] Length = 632 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 LLRP + +E GQ A +L +K + H++ GPPG+GKTT A+ +A E Sbjct: 165 LLRPDSFDEVVGQERAVKSL-----LSKLASPYPQHIILYGPPGVGKTTAAR-IALETAK 218 Query: 81 NFRST 85 +ST Sbjct: 219 KLKST 223 >gi|169343167|ref|ZP_02864188.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str. JGS1495] gi|169298719|gb|EDS80795.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str. JGS1495] Length = 601 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 224 >gi|167906504|ref|ZP_02493709.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia pseudomallei NCTC 13177] Length = 666 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 266 IFIDELDALGKV 277 >gi|53722142|ref|YP_111127.1| FtsH-2 protease [Burkholderia pseudomallei K96243] gi|126458626|ref|YP_001075521.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1106a] gi|167723562|ref|ZP_02406798.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia pseudomallei DM98] gi|167819698|ref|ZP_02451378.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia pseudomallei 91] gi|167849539|ref|ZP_02475047.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia pseudomallei B7210] gi|217418885|ref|ZP_03450392.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576] gi|237508806|ref|ZP_04521521.1| putative Cell division protease FtsH homolog [Burkholderia pseudomallei MSHR346] gi|242311752|ref|ZP_04810769.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1106b] gi|254190192|ref|ZP_04896701.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei Pasteur 52237] gi|254193314|ref|ZP_04899748.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13] gi|254262317|ref|ZP_04953182.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1710a] gi|254300451|ref|ZP_04967897.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e] gi|310943147|sp|Q3JMH0|FTSH_BURP1 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|52212556|emb|CAH38582.1| FtsH-2 protease [Burkholderia pseudomallei K96243] gi|126232394|gb|ABN95807.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1106a] gi|157810094|gb|EDO87264.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e] gi|157937869|gb|EDO93539.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei Pasteur 52237] gi|169650067|gb|EDS82760.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13] gi|217398189|gb|EEC38204.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576] gi|235001011|gb|EEP50435.1| putative Cell division protease FtsH homolog [Burkholderia pseudomallei MSHR346] gi|242134991|gb|EES21394.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1106b] gi|254213319|gb|EET02704.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1710a] Length = 666 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 266 IFIDELDALGKV 277 >gi|15893891|ref|NP_347240.1| ATP-dependent zinc metallopeptidase FtsH (cell dividion protein) [Clostridium acetobutylicum ATCC 824] gi|15023472|gb|AAK78580.1|AE007575_4 ATP-dependent zinc metallopeptidase FtsH (cell dividion protein) [Clostridium acetobutylicum ATCC 824] gi|325508018|gb|ADZ19654.1| ATP-dependent zinc metallopeptidase FtsH (cell dividion protein) [Clostridium acetobutylicum EA 2018] Length = 621 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 7/70 (10%) Query: 25 RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +T E+ GQ EA +L ++ A+ A+ L VGPPG GKT LA+ VA E Sbjct: 162 KTFEDVAGQEEAKESLVEIVDFLHNPNKYAEIGAKLPKGALLVGPPGTGKTLLAKAVAGE 221 Query: 78 LGVNFRSTSG 87 V F S SG Sbjct: 222 AKVPFFSMSG 231 >gi|17228756|ref|NP_485304.1| cell division protein [Nostoc sp. PCC 7120] gi|17130608|dbj|BAB73218.1| cell division protein [Nostoc sp. PCC 7120] Length = 613 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224 >gi|22297675|ref|NP_680922.1| cell division protein [Thermosynechococcus elongatus BP-1] gi|22293852|dbj|BAC07684.1| cell division protein [Thermosynechococcus elongatus BP-1] Length = 612 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223 >gi|18311452|ref|NP_563386.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens str. 13] gi|168206865|ref|ZP_02632870.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str. JGS1987] gi|168211208|ref|ZP_02636833.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str. ATCC 3626] gi|168215142|ref|ZP_02640767.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE str. F4969] gi|168218230|ref|ZP_02643855.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC 8239] gi|18146136|dbj|BAB82176.1| probable cell-division protein [Clostridium perfringens str. 13] gi|170661765|gb|EDT14448.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str. JGS1987] gi|170710762|gb|EDT22944.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str. ATCC 3626] gi|170713449|gb|EDT25631.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE str. F4969] gi|182379753|gb|EDT77232.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC 8239] Length = 601 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 224 >gi|67922579|ref|ZP_00516086.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501] gi|67855588|gb|EAM50840.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501] Length = 636 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ VA E GV F S SG Sbjct: 225 VLLIGPPGTGKTLLAKAVAGEAGVPFFSISG 255 >gi|331268097|ref|YP_004347746.1| cell division protein [Chlorella variabilis] gi|325296274|gb|ADZ04994.1| cell division protein [Chlorella variabilis] Length = 1489 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 8/89 (8%) Query: 49 ARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---E 104 A ++ L H +L GPPG GKT L Q +A E V SG + + G+ A+ + E Sbjct: 790 ALSKTLPHGILLTGPPGTGKTLLVQALAGEAQVPIIVLSGSSLIEPGESASFKLQMVFQE 849 Query: 105 DRD----VLFIDEIHRLSIIVEEILYPAM 129 R ++FIDEI LS +I+ M Sbjct: 850 ARQLAPCIVFIDEIDTLSSKRSQIVQNPM 878 >gi|312213539|emb|CBX89969.1| similar to ATP-dependent protease La [Leptosphaeria maculans] Length = 932 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 33/163 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA----------GDLAALLTNLED 105 +L GPPG+GKT+LA+ VA LG F S G V +A + L+ N Sbjct: 484 LLLAGPPGVGKTSLAKSVATALGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGLIVNGLK 543 Query: 106 R-----DVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 + V+ +DEI +L S + E+L P D VG + I+L Sbjct: 544 KVGVANPVILLDEIDKLAGSNHNGDPSAAMLEVLDPEQNHTFTDHYVG-------IPIDL 596 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 S+ IA + + PL DR I L+ Y + + I R Sbjct: 597 SKVLFIATANSLDTIPPPLLDRMET-IELSGYTTIEKRHIASR 638 >gi|296393301|ref|YP_003658185.1| DNA polymerase III subunits gamma and tau [Segniliparus rotundus DSM 44985] gi|296180448|gb|ADG97354.1| DNA polymerase III, subunits gamma and tau [Segniliparus rotundus DSM 44985] Length = 664 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP L++ GQ L V +EA + L H LF GP G GKT+LA+++AR + Sbjct: 8 RPERLDQVLGQEHVTKPLSVALEAGR-----LGHAYLFSGPRGCGKTSLARILARSVNCE 62 Query: 82 FRSTSGPV 89 T+ P Sbjct: 63 KGPTANPC 70 >gi|284931299|gb|ADC31237.1| replication-associated recombination protein A (rarA) [Mycoplasma gallisepticum str. F] Length = 413 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 25/109 (22%) Query: 21 LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +P ++E+ GQ L+ I+ K + +L G PG+GKTTL ++ E Sbjct: 11 FYQPESVEDIIGQKHLLHEYGILRRMIDLRKPYS-----LLVTGEPGIGKTTLCNILISE 65 Query: 78 LGV---NFRSTSGPV------IAKAGDLAALLTNLEDRDVLFIDEIHRL 117 + + +F S S + I+KA DL ++ V+ IDEIHRL Sbjct: 66 MNLPSFSFNSASDSLQELKQFISKAKDL--------NQCVIIIDEIHRL 106 >gi|258509509|ref|YP_003172260.1| cell division protein FtsH [Lactobacillus rhamnosus GG] gi|257149436|emb|CAR88409.1| Cell division protein FtsH [Lactobacillus rhamnosus GG] gi|259650777|dbj|BAI42939.1| ATP-dependent Zn protease FtsH [Lactobacillus rhamnosus GG] Length = 716 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPSI 284 Query: 109 LFIDEI 114 +FIDEI Sbjct: 285 IFIDEI 290 >gi|294871503|ref|XP_002765958.1| hypothetical protein Pmar_PMAR024969 [Perkinsus marinus ATCC 50983] gi|239866406|gb|EEQ98675.1| hypothetical protein Pmar_PMAR024969 [Perkinsus marinus ATCC 50983] Length = 366 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 16/77 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100 +L VGPPG GKT++A+ +A+ LG F S ++ AG+ L+AL+ Sbjct: 12 LLLVGPPGCGKTSIAESIAKALGRRFEMVSLGGLSDAGELKGHRRTYIGSQPGKILSALI 71 Query: 101 TNLEDRDVLFIDEIHRL 117 + V+ +DEI +L Sbjct: 72 ASGSKNPVILLDEIDKL 88 >gi|238018908|ref|ZP_04599334.1| hypothetical protein VEIDISOL_00768 [Veillonella dispar ATCC 17748] gi|237864392|gb|EEP65682.1| hypothetical protein VEIDISOL_00768 [Veillonella dispar ATCC 17748] Length = 410 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 +VLF+GP G GKT LAQ +A+ L V F + +AG + + N+ Sbjct: 103 NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDI 162 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 163 ARAERGIIYIDEIDKIA 179 >gi|229551624|ref|ZP_04440349.1| M41 family endopeptidase FtsH [Lactobacillus rhamnosus LMS2-1] gi|258540709|ref|YP_003175208.1| cell division protein FtsH [Lactobacillus rhamnosus Lc 705] gi|229315028|gb|EEN81001.1| M41 family endopeptidase FtsH [Lactobacillus rhamnosus LMS2-1] gi|257152385|emb|CAR91357.1| Cell division protein FtsH [Lactobacillus rhamnosus Lc 705] Length = 716 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPSI 284 Query: 109 LFIDEI 114 +FIDEI Sbjct: 285 IFIDEI 290 >gi|169237565|ref|YP_001690769.1| AAA-type ATPase (cell division control protein homolog) [Halobacterium salinarum R1] gi|167728792|emb|CAP15676.1| AAA-type ATPase (cell division control protein homolog) [Halobacterium salinarum R1] Length = 415 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 22/125 (17%) Query: 16 DADISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGP 62 + D S L P+ + + F G + +K +E E + V LF GP Sbjct: 133 ETDSSDLTPKNVPDKEYADFGGMDDVVEEVKYKVEVPLKEPERFEDVGMSAPKGVLFYGP 192 Query: 63 PGLGKTTLAQVVAREL-GVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDE 113 PG GKT LA++VA ++ +F S GP ++ A L L N + ++F DE Sbjct: 193 PGTGKTYLAKIVANQVEDASFYSIRGPELSHELVGGTARKLRGLFENAKKNPPAIIFFDE 252 Query: 114 IHRLS 118 I ++ Sbjct: 253 IDSMA 257 >gi|166363123|ref|YP_001655396.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166085496|dbj|BAG00204.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 617 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228 >gi|126442831|ref|YP_001062570.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668] gi|167828076|ref|ZP_02459547.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 9] gi|226198325|ref|ZP_03793895.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei Pakistan 9] gi|126222322|gb|ABN85827.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668] gi|225929609|gb|EEH25626.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei Pakistan 9] Length = 666 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 266 IFIDELDALGKV 277 >gi|110800961|ref|YP_697158.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC 13124] gi|110675608|gb|ABG84595.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC 13124] Length = 601 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 224 >gi|78223097|ref|YP_384844.1| FtsH peptidase [Geobacter metallireducens GS-15] gi|78194352|gb|ABB32119.1| membrane protease FtsH catalytic subunit [Geobacter metallireducens GS-15] Length = 608 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 189 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 219 >gi|77556179|gb|ABA98975.1| NB-ARC domain containing protein, expressed [Oryza sativa Japonica Group] gi|215686821|dbj|BAG89671.1| unnamed protein product [Oryza sativa Japonica Group] Length = 700 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 20/196 (10%) Query: 40 LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99 +K+ E A ++ L + VGP GLGKTTLA V R+L F+ + +++ D+ + Sbjct: 176 IKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKI 235 Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD----LMVGEGPSARSVK-INLSRF 154 + N+ + + E + I EE L A +F + +++ + S ++ K I + F Sbjct: 236 VRNIYCQ--VSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALF 293 Query: 155 -----TLIAATTR----VGLLTNPLQDR-FGI-PIRLNFYEIEDLKTIVQRGAKLTGLAV 203 + I TTR P DR F I P+ ++ + LK I G+K + Sbjct: 294 VNNCGSRIMTTTRNMAIAKSCCTPDHDRVFEIMPLSIDNSKSLFLKRIF--GSKDVCIPQ 351 Query: 204 TDEAACEIAMRSRGTP 219 DE EI + G+P Sbjct: 352 LDEVCYEILKKCGGSP 367 >gi|332796313|ref|YP_004457813.1| AAA ATPase [Acidianus hospitalis W1] gi|332694048|gb|AEE93515.1| AAA family ATPase, CDC48 subfamily [Acidianus hospitalis W1] Length = 767 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E G NF + GP Sbjct: 500 ILLFGPPGTGKTMLAKAVATESGANFIAVRGP 531 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 8/77 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108 VL GPPG GKT LA+ VA E F S +GP I G+ L + ED + Sbjct: 227 VLLYGPPGTGKTLLAKAVANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 286 Query: 109 LFIDEIHRLSIIVEEIL 125 +FIDEI ++ +E++ Sbjct: 287 IFIDEIDAIAPKRDEVI 303 >gi|320164481|gb|EFW41380.1| 26S proteasome regulatory complex [Capsaspora owczarzaki ATCC 30864] Length = 1105 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E G +F S GP Sbjct: 795 VLLYGPPGCGKTLLAKAIAHESGASFISIKGP 826 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 17/100 (17%) Query: 32 GQVEAC-SNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNF 82 G +E+C +++ IE E H +L GPPG GKT LA +A EL + F Sbjct: 403 GGLESCLQDVRELIEYPLTHPEIYVHLGVEPPRGILLHGPPGCGKTLLANAIAGELELPF 462 Query: 83 RSTSGPVIAK--AGDLAALLTNL------EDRDVLFIDEI 114 S P I +G+ A + +L + ++FIDEI Sbjct: 463 LKVSAPEIVSGMSGESEAKIRDLFAEAAAQAPCIVFIDEI 502 >gi|310821340|ref|YP_003953698.1| hypothetical protein STAUR_4087 [Stigmatella aurantiaca DW4/3-1] gi|309394412|gb|ADO71871.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 1828 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 26/44 (59%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 R + + +L + PPG GKTTL + VA LG+ F +GP + A Sbjct: 1280 RTDRMGMLLLMSPPGYGKTTLMEYVASRLGLTFVKVNGPALGHA 1323 >gi|302337809|ref|YP_003803015.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta smaragdinae DSM 11293] gi|301634994|gb|ADK80421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Spirochaeta smaragdinae DSM 11293] Length = 413 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +VL +GP G GKT LA+ +AR+L V F + +AG D+ +L L Sbjct: 111 NVLLLGPTGTGKTLLAKTLARKLKVPFAIADATTLTEAGYVGEDVENILLKLIQAAGNNI 170 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 171 AAAERGIIYIDEIDKIS 187 >gi|299469796|emb|CBN76650.1| FtsH protease [Ectocarpus siliculosus] Length = 738 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 19/101 (18%) Query: 33 QVEACSNLKVFIEA-----------AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 QV C + K +E K A+ V+ GPPG GKT +A+ VA E GV Sbjct: 267 QVAGCDSAKFELEEVVDFLKNPAKYTKVGAKIPRGVILEGPPGTGKTLIARAVAGEAGVP 326 Query: 82 FRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 F +TSG + G AA + +L D+ ++FIDEI Sbjct: 327 FIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEI 367 >gi|291525458|emb|CBK91045.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium rectale DSM 17629] Length = 423 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 28/135 (20%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD---------HVLFVGPP 63 DI+L+ P L+ F GQ +A L V + R A D ++L +GP Sbjct: 62 DINLVTPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRVLAGDTSDVELQKSNILMLGPT 121 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------VL 109 G GKT LAQ +AR + V F + +AG D+ +L L D D ++ Sbjct: 122 GSGKTLLAQTLARVINVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDIERAEHGII 181 Query: 110 FIDEIHRLSIIVEEI 124 +IDEI +++ E + Sbjct: 182 YIDEIDKITKKSENV 196 >gi|291166566|gb|EFE28612.1| ATP-dependent metalloprotease FtsH [Filifactor alocis ATCC 35896] Length = 666 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT L++ VA E GV F S SG Sbjct: 199 ILMVGPPGTGKTYLSKAVAGEAGVPFYSISG 229 >gi|296136116|ref|YP_003643358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thiomonas intermedia K12] gi|295796238|gb|ADG31028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thiomonas intermedia K12] Length = 420 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104 A ++L VGP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 113 AKSNILLVGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 172 Query: 105 ------DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 173 YEIERAQRGIVYIDEIDKIS 192 >gi|239825648|ref|YP_002948272.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70] gi|239805941|gb|ACS23006.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70] Length = 635 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228 >gi|313125289|ref|YP_004035553.1| ATPase AAA [Halogeometricum borinquense DSM 11551] gi|312291654|gb|ADQ66114.1| AAA+ family ATPase [Halogeometricum borinquense DSM 11551] Length = 456 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 22/26 (84%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF 82 +LFVGPPG GKTT+++ +A ELG+ F Sbjct: 222 ILFVGPPGTGKTTVSRALAHELGLPF 247 >gi|261417562|ref|YP_003251244.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61] gi|297528437|ref|YP_003669712.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3] gi|319765219|ref|YP_004130720.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52] gi|261374019|gb|ACX76762.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61] gi|297251689|gb|ADI25135.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3] gi|317110085|gb|ADU92577.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52] Length = 632 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228 >gi|212637911|ref|YP_002314431.1| ATP-dependent Zn protease FtsH [Anoxybacillus flavithermus WK1] gi|212559391|gb|ACJ32446.1| ATP-dependent Zn protease FtsH [Anoxybacillus flavithermus WK1] Length = 627 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228 >gi|182625999|ref|ZP_02953762.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str. JGS1721] gi|177908706|gb|EDT71217.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str. JGS1721] Length = 601 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 224 >gi|86608120|ref|YP_476882.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)] gi|123738037|sp|Q2JNP0|FTSH_SYNJB RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|86556662|gb|ABD01619.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)] Length = 638 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 235 >gi|83646751|ref|YP_435186.1| ATP-dependent Zn protease [Hahella chejuensis KCTC 2396] gi|123739894|sp|Q2SF13|FTSH_HAHCH RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|83634794|gb|ABC30761.1| ATP-dependent Zn protease [Hahella chejuensis KCTC 2396] Length = 619 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T +E GQ A ++ +E + A A VL +GPPG GKT LA+ +A E Sbjct: 174 TFDEVAGQTNAKREVQELVEYLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGEA 233 Query: 79 GVNFRSTSG 87 GVNF S Sbjct: 234 GVNFYPMSA 242 >gi|75906798|ref|YP_321094.1| FtsH peptidase [Anabaena variabilis ATCC 29413] gi|75700523|gb|ABA20199.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC 29413] Length = 613 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224 >gi|24658770|ref|NP_726263.1| CG3499 [Drosophila melanogaster] gi|15291271|gb|AAK92904.1| GH14313p [Drosophila melanogaster] gi|23240115|gb|AAM71132.2| CG3499 [Drosophila melanogaster] gi|220945266|gb|ACL85176.1| CG3499-PB [synthetic construct] gi|220954998|gb|ACL90042.1| CG3499-PB [synthetic construct] Length = 736 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA LK +E K+ + + VL VGPPG GKT LA+ VA E Sbjct: 298 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 357 Query: 79 GVNFRSTSGP 88 V F +GP Sbjct: 358 KVPFFHAAGP 367 >gi|49474140|ref|YP_032182.1| ATP-dependent protease ATP-binding subunit [Bartonella quintana str. Toulouse] gi|61211489|sp|Q6G177|CLPX_BARQU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|49239644|emb|CAF26004.1| ATP-dependent clp protease ATP-binding subunit clpX [Bartonella quintana str. Toulouse] Length = 424 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|313893233|ref|ZP_07826810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella sp. oral taxon 158 str. F0412] gi|313442586|gb|EFR61001.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella sp. oral taxon 158 str. F0412] Length = 417 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 +VLF+GP G GKT LAQ +A+ L V F + +AG + + N+ Sbjct: 110 NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDI 169 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 170 ARAERGIIYIDEIDKIA 186 >gi|298710281|emb|CBJ31903.1| conserved unknown protein [Ectocarpus siliculosus] Length = 1242 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 L GPPG GKT LA VA E G+NF S GP + Sbjct: 1069 ALLYGPPGCGKTLLAGAVAAECGLNFISVKGPEV 1102 >gi|291550776|emb|CBL27038.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Ruminococcus torques L2-14] Length = 423 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 28/129 (21%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63 DI+LL P ++ F GQ EA L V + R A ++L +GP Sbjct: 60 DINLLTPEEMKAFLDEYVIGQDEAKKVLSVAVYNHYKRILAEQDLGVELQKSNILMLGPT 119 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109 G GKT LAQ +A+ L V F + +AG + + N+ + ++ Sbjct: 120 GCGKTLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKVIQAADGDIERAEHGII 179 Query: 110 FIDEIHRLS 118 +IDEI +++ Sbjct: 180 YIDEIDKIT 188 >gi|317130918|ref|YP_004097200.1| ATPase associated with various cellular activities AAA_3 [Bacillus cellulosilyticus DSM 2522] gi|315475866|gb|ADU32469.1| ATPase associated with various cellular activities AAA_3 [Bacillus cellulosilyticus DSM 2522] Length = 309 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 28/175 (16%) Query: 37 CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGD 95 +NL++ + A A HVL G PG GKT + + +A LG +F R P + + Sbjct: 20 STNLRLLLSAVLAGG----HVLIEGVPGTGKTQMVRTLANLLGGDFNRIQFTPDLLPSDI 75 Query: 96 LAALLTNLEDR-----------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144 + + N++D +VL DEI+R + L AME+ Q+ + GE Sbjct: 76 TGSTIYNMKDSSFETLKGPIFTNVLLADEINRTPAKTQAALLEAMEEKQVTIQ-GETYQL 134 Query: 145 RSVKINLSRFTLIAATTRVGLL-TNPL----QDRFGIPIRLNFYEIEDLKTIVQR 194 V F ++A + T PL QDRF + ++F +E+ + ++++ Sbjct: 135 DDV------FFVVATQNPIEFEGTYPLPEAQQDRFLFKLLIDFPTLEEEQNVLKQ 183 >gi|237743482|ref|ZP_04573963.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 7_1] gi|229433261|gb|EEO43473.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 7_1] Length = 482 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 35/248 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + E +G+ E +LK+ ++ K+ A A LF GP G+GKTT+A+++A+ GVN Sbjct: 10 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63 Query: 83 RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + +G + + A+ L ++ IDEI L E+I Y +E + Sbjct: 64 LNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120 Query: 134 LDLMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNF-- 182 ++ E N TL I ATT + + + R R +F Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPTIISRCQ---RYDFKP 177 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 ++E++K ++ K L++TD+ I S G+ R + +L R+ A+ K I Sbjct: 178 LDLEEMKAGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERL---IVTANGKEIN 234 Query: 243 REIADAAL 250 +IA+ L Sbjct: 235 LKIAEDTL 242 >gi|294656475|ref|XP_458749.2| DEHA2D06688p [Debaryomyces hansenii CBS767] gi|199431503|emb|CAG86893.2| DEHA2D06688p [Debaryomyces hansenii] Length = 852 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD-- 107 EA VL GPPG GKTT+A +A EL V F + S P + +G+ L + D Sbjct: 228 EAPRGVLLYGPPGCGKTTIANALAGELQVPFLNISAPSVVSGMSGESEKKLREIFDEAKT 287 Query: 108 ----VLFIDEIHRLS 118 ++F+DEI ++ Sbjct: 288 LAPCIIFMDEIDAIT 302 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 579 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 610 >gi|186489959|ref|NP_001117460.1| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|332194398|gb|AEE32519.1| P-loop containing NTPase domain-containing protein [Arabidopsis thaliana] Length = 981 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E G NF S +G + GD L L + Sbjct: 730 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVI 789 Query: 109 LFIDEIHRL 117 +F+DEI L Sbjct: 790 IFVDEIDSL 798 >gi|171059224|ref|YP_001791573.1| ATP-dependent protease ATP-binding subunit ClpX [Leptothrix cholodnii SP-6] gi|238689116|sp|B1Y6H2|CLPX_LEPCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|170776669|gb|ACB34808.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptothrix cholodnii SP-6] Length = 424 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104 A ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 AKSNILLIGPTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 175 Query: 105 ------DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 YEVERAQRGIVYIDEIDKIS 195 >gi|167577949|ref|ZP_02370823.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia thailandensis TXDOH] Length = 662 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 266 IFIDELDALGKV 277 >gi|170094016|ref|XP_001878229.1| predicted protein [Laccaria bicolor S238N-H82] gi|164646683|gb|EDR10928.1| predicted protein [Laccaria bicolor S238N-H82] Length = 359 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80 RP+T++E + Q + L+ + + L H+LF GPPG GKT+ +AR+L Sbjct: 32 RPKTIDEVSAQEHTVAVLRKTLTSTN-----LPHMLFYGPPGTGKTSTILALARQLFGPD 86 Query: 81 NFRS 84 NFR+ Sbjct: 87 NFRN 90 >gi|162148814|ref|YP_001603275.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter diazotrophicus PAl 5] gi|209545438|ref|YP_002277667.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter diazotrophicus PAl 5] gi|189044136|sp|A9HRV3|CLPX_GLUDA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|161787391|emb|CAP56986.1| ATP-dependent Clp protease ATP-binding subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209533115|gb|ACI53052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gluconacetobacter diazotrophicus PAl 5] Length = 419 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 109 AKSNILLVGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 168 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 169 YNVERAQRGIVYIDEIDKIS 188 >gi|159028065|emb|CAO87142.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 617 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228 >gi|119512548|ref|ZP_01631626.1| cell division protein [Nodularia spumigena CCY9414] gi|119462809|gb|EAW43768.1| cell division protein [Nodularia spumigena CCY9414] Length = 612 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223 >gi|71083580|ref|YP_266299.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Pelagibacter ubique HTCC1062] gi|71062693|gb|AAZ21696.1| ATP-dependent clp proteinase regulatory chain X [Candidatus Pelagibacter ubique HTCC1062] Length = 422 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 NILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNV 169 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 170 EKAQRGIVYIDEVDKIS 186 >gi|322706939|gb|EFY98518.1| peroxin-1, putative [Metarhizium anisopliae ARSEF 23] Length = 1444 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 77/183 (42%), Gaps = 35/183 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L G PG GKT LA VA E G+NF S GP I G + +L DR V Sbjct: 871 LLLYGYPGCGKTLLASAVAGECGLNFISVKGPEILNKYIGASEKSVRDLFDRAQAAKPCV 930 Query: 109 LFIDEI--------HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160 LF DE H + + + ++ + Q+D G LS ++AAT Sbjct: 931 LFFDEFDSIAPKRGHDSTGVTDRVVNQLLT--QMDGAEG-----------LSGVYVLAAT 977 Query: 161 TRVGLLTNPL--QDRFGIPIRLNFYEIED----LKTIVQRGAKLTGLAVTDEAACEIAMR 214 +R L+ L R + + +ED +K + Q+ + L +D+ EIA R Sbjct: 978 SRPDLIDPALLRPGRLDKSLLCDLPSLEDRLDIIKALFQKVRLSSELTDSDDGLTEIARR 1037 Query: 215 SRG 217 + G Sbjct: 1038 TDG 1040 >gi|332654057|ref|ZP_08419801.1| cell division protein FtsH [Ruminococcaceae bacterium D16] gi|332517143|gb|EGJ46748.1| cell division protein FtsH [Ruminococcaceae bacterium D16] Length = 724 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T + GQ EA +L+ I+ + A+ L VGPPG GKT LA+ VA E Sbjct: 199 TFRDVAGQDEAKESLQEIIDILHNPQKYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 258 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 259 GVPFFSISG 267 >gi|302687482|ref|XP_003033421.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8] gi|300107115|gb|EFI98518.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8] Length = 343 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP TL++ + + + FIE + L H+LF GPPG GKT+ VAR + Sbjct: 29 VEKYRPVTLDDVVSHKDITTTIDKFIEKNR-----LPHLLFYGPPGTGKTSTILAVARRI 83 Query: 79 -GVNFRS 84 G +R Sbjct: 84 YGPEYRK 90 >gi|296109578|ref|YP_003616527.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] gi|295434392|gb|ADG13563.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] Length = 369 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 12/100 (12%) Query: 27 LEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 +E GQ +A K+ +++ + E A +VLF GPPG GKT +A+ +A E +F Sbjct: 121 FDEIIGQEDAKKKCKIIMKYLQNPELFGEWAPKNVLFYGPPGTGKTMMARALATETDSSF 180 Query: 83 RSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEI 114 P + GD A ++ L + ++FIDE+ Sbjct: 181 IMVKAPELIGEHVGDSAKMIRELYKKASESAPCIIFIDEL 220 >gi|295401966|ref|ZP_06811928.1| ATP-dependent metalloprotease FtsH [Geobacillus thermoglucosidasius C56-YS93] gi|312109217|ref|YP_003987533.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y4.1MC1] gi|294975968|gb|EFG51584.1| ATP-dependent metalloprotease FtsH [Geobacillus thermoglucosidasius C56-YS93] gi|311214318|gb|ADP72922.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y4.1MC1] Length = 634 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228 >gi|294873159|ref|XP_002766534.1| replication factor C3, putative [Perkinsus marinus ATCC 50983] gi|239867474|gb|EEQ99251.1| replication factor C3, putative [Perkinsus marinus ATCC 50983] Length = 354 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ E +K F+ + AL H+L GPPG GKT+ AR++ Sbjct: 35 RPKTLDDLVAHQEIIETIKRFV-----KMNALPHLLLHGPPGTGKTSTILACARQM 85 >gi|254388632|ref|ZP_05003865.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] gi|326441646|ref|ZP_08216380.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] gi|197702352|gb|EDY48164.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] Length = 661 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 169 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226 >gi|197103300|ref|YP_002128678.1| ATP-dependent metalloprotease [Phenylobacterium zucineum HLK1] gi|196480576|gb|ACG80103.1| ATP-dependent metalloprotease [Phenylobacterium zucineum HLK1] Length = 635 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S +G + G AA + +L ++ + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVKFFSITGSEFVEMFVGVGAARVRDLFEQARAQAPAI 260 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 261 IFIDELDAL 269 >gi|126656220|ref|ZP_01727604.1| cell division protein; FtsH [Cyanothece sp. CCY0110] gi|126622500|gb|EAZ93206.1| cell division protein; FtsH [Cyanothece sp. CCY0110] Length = 621 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ VA E GV F S SG Sbjct: 209 VLLIGPPGTGKTLLAKAVAGEAGVPFFSISG 239 >gi|85104882|ref|XP_961826.1| ATP-dependent protease La [Neurospora crassa OR74A] gi|74616606|sp|Q7S8C4|LONM_NEUCR RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor gi|28923404|gb|EAA32590.1| ATP-dependent protease La [Neurospora crassa OR74A] Length = 1107 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 37/179 (20%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83 FI K R +L FVGPPG+GKT++ + +AR LG + R Sbjct: 575 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALGRQYYRFSVGGLTDVAEIKGHRR 634 Query: 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLD 135 + G + + + AL + ++ IDEI ++ S + E+L P LD Sbjct: 635 TYVGALPGRV--IQALKKCKTENPLILIDEIDKIGRGYQGDPSSALLELLDPEQNGSFLD 692 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + V ++LS+ + + PL DR + IRL+ Y ++ I ++ Sbjct: 693 HYL-------DVPVDLSKVLFVCTANLTDTIPRPLLDRMEV-IRLSGYVADEKMAIAEK 743 >gi|294340352|emb|CAZ88733.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thiomonas sp. 3As] Length = 422 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104 A ++L VGP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 113 AKSNILLVGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 172 Query: 105 ------DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 173 YEIERAQRGIVYIDEIDKIS 192 >gi|291528434|emb|CBK94020.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium rectale M104/1] Length = 423 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 29/153 (18%) Query: 1 MMDREGLLSR-NVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL 54 +++ EG+ + S DI+L+ P L+ F GQ +A L V + R A Sbjct: 44 ILEEEGVEGHEDKSSAKDDINLVTPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRVLAG 103 Query: 55 D---------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT 101 D ++L +GP G GKT LAQ +AR + V F + +AG D+ +L Sbjct: 104 DTSDVELQKSNILMLGPTGSGKTLLAQTLARVINVPFAIADATTLTEAGYVGEDVENILL 163 Query: 102 NL---EDRD-------VLFIDEIHRLSIIVEEI 124 L D D +++IDEI +++ E + Sbjct: 164 KLIQAADYDIERAEHGIIYIDEIDKITKKSENV 196 >gi|292656040|ref|YP_003535937.1| cell division control protein 48 [Haloferax volcanii DS2] gi|291370819|gb|ADE03046.1| cell division control protein 48 [Haloferax volcanii DS2] Length = 474 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 22/26 (84%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF 82 +LFVGPPG GKTT+++ +A ELG+ F Sbjct: 221 ILFVGPPGTGKTTVSRALAHELGLPF 246 >gi|290958426|ref|YP_003489608.1| membrane-bound FtsH family protein [Streptomyces scabiei 87.22] gi|260647952|emb|CBG71057.1| putative membrane-bound FtsH-family protein [Streptomyces scabiei 87.22] Length = 660 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226 >gi|298489876|ref|YP_003720053.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] gi|298231794|gb|ADI62930.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] Length = 613 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224 >gi|172038492|ref|YP_001804993.1| cell division protein [Cyanothece sp. ATCC 51142] gi|171699946|gb|ACB52927.1| cell division protein [Cyanothece sp. ATCC 51142] Length = 617 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228 >gi|167898139|ref|ZP_02485541.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 7894] Length = 666 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 266 IFIDELDALGKV 277 >gi|125622902|ref|YP_001031385.1| putative cell division protein [Lactococcus lactis subsp. cremoris MG1363] gi|124491710|emb|CAL96629.1| putative cell division protein [Lactococcus lactis subsp. cremoris MG1363] gi|300069640|gb|ADJ59040.1| putative cell division protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 695 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 229 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|148553516|ref|YP_001261098.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingomonas wittichii RW1] gi|166215208|sp|A5V3U4|CLPX_SPHWW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|148498706|gb|ABQ66960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas wittichii RW1] Length = 424 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 111 AKSNILLVGPTGSGKTLLAQTMARLLDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 170 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 171 YNVERAQRGIVYIDEIDKIS 190 >gi|110803261|ref|YP_699726.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101] gi|110683762|gb|ABG87132.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101] Length = 601 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 224 >gi|56418597|ref|YP_145915.1| cell-division protein and general stress protein [Geobacillus kaustophilus HTA426] gi|56378439|dbj|BAD74347.1| cell-division protein and general stress protein (class III heat-shock) [Geobacillus kaustophilus HTA426] Length = 632 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228 >gi|312113124|ref|YP_004010720.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodomicrobium vannielii ATCC 17100] gi|311218253|gb|ADP69621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodomicrobium vannielii ATCC 17100] Length = 422 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 111 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 170 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 171 YNVDRAQRGIVYIDEVDKIS 190 >gi|229820511|ref|YP_002882037.1| Shikimate kinase [Beutenbergia cavernae DSM 12333] gi|229566424|gb|ACQ80275.1| Shikimate kinase [Beutenbergia cavernae DSM 12333] Length = 173 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 26/38 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 V+ VGPPG GKTT++ ++A LGV+ R T V A AG Sbjct: 6 VVLVGPPGSGKTTVSALLAAALGVDVRDTDADVEATAG 43 >gi|184201574|ref|YP_001855781.1| cell division protein FtsH [Kocuria rhizophila DC2201] gi|183581804|dbj|BAG30275.1| ATP-dependent protease FtsH [Kocuria rhizophila DC2201] Length = 709 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 91/222 (40%), Gaps = 42/222 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L ++ + Sbjct: 206 VLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFQQAKENAPAI 265 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-----------SRFTLI 157 +F+DEI + Q +G G R +N + LI Sbjct: 266 IFVDEIDAVG-------------RQRGAGMGGGNDEREQTLNQLLVEMDGFDANTNVILI 312 Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 AAT R +L L RF I ++ +++ + I++ AK LA ++A + Sbjct: 313 AATNRPDVLDPALLRPGRFDRQIGVDAPDMKGREQILRVHAKNKPLAQN----VDLASVA 368 Query: 216 RGTPRIAGRLLRRVRDFAEV----AHAKTITREIADAALLRL 253 + TP G L V + A + +HA+ I D A+ R+ Sbjct: 369 KRTPGFTGAELANVMNEAALLTARSHAQLIDDRAVDEAIDRV 410 >gi|182678216|ref|YP_001832362.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp. indica ATCC 9039] gi|182634099|gb|ACB94873.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp. indica ATCC 9039] Length = 617 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 198 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARKAAPCI 257 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 258 IFIDELDAL 266 >gi|188584723|ref|YP_001916268.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41, membrane protease FtsH catalytic subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|310946749|sp|B2A3Q4|FTSH_NATTJ RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|179349410|gb|ACB83680.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41, membrane protease FtsH catalytic subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 693 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT L + VA E GV F S SG V A + L N + + Sbjct: 190 VLLVGPPGTGKTLLGRAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNSPCI 249 Query: 109 LFIDEI 114 +FIDEI Sbjct: 250 VFIDEI 255 >gi|167922700|ref|ZP_02509791.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei BCC215] Length = 666 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 266 IFIDELDALGKV 277 >gi|126657611|ref|ZP_01728766.1| cell division protein; FtsH [Cyanothece sp. CCY0110] gi|126621067|gb|EAZ91781.1| cell division protein; FtsH [Cyanothece sp. CCY0110] Length = 617 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228 >gi|167914858|ref|ZP_02501949.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 112] Length = 659 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 199 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 258 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 259 IFIDELDALGKV 270 >gi|67640886|ref|ZP_00439678.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei GB8 horse 4] gi|251767920|ref|ZP_04820323.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei PRL-20] gi|254174450|ref|ZP_04881112.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei ATCC 10399] gi|160695496|gb|EDP85466.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei ATCC 10399] gi|238521691|gb|EEP85141.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei GB8 horse 4] gi|243061367|gb|EES43553.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei PRL-20] Length = 659 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 199 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 258 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 259 IFIDELDALGKV 270 >gi|309790742|ref|ZP_07685291.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6] gi|308227233|gb|EFO80912.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6] Length = 653 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/30 (70%), Positives = 22/30 (73%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 VL VGPPG GKT LA+ VA E GV F STS Sbjct: 214 VLLVGPPGTGKTLLAKAVAGEAGVPFFSTS 243 >gi|307183818|gb|EFN70466.1| Katanin p60 ATPase-containing subunit A-like 2 [Camponotus floridanus] Length = 493 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAA---LLTNLEDR---DV 108 VL GPPG GKT LA+ VA E F + TS +I+K GD +LT+L + Sbjct: 251 VLLYGPPGTGKTMLAKAVATECQSTFFNITSSSIISKWRGDSEKYIRVLTDLAKHYAPTI 310 Query: 109 LFIDEI 114 +FIDEI Sbjct: 311 IFIDEI 316 >gi|302553170|ref|ZP_07305512.1| cell division protein FtsH [Streptomyces viridochromogenes DSM 40736] gi|302470788|gb|EFL33881.1| cell division protein FtsH [Streptomyces viridochromogenes DSM 40736] Length = 669 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 170 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 227 >gi|300784640|ref|YP_003764931.1| shikimate kinase [Amycolatopsis mediterranei U32] gi|299794154|gb|ADJ44529.1| shikimate kinase [Amycolatopsis mediterranei U32] Length = 175 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 19/163 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117 + VGPPG GK+T+ ++A LGV FR + V+A+AG + D+ D Sbjct: 7 VIVGPPGSGKSTVGPLLAAALGVEFRDSDDDVVARAGRSIS--------DIFAEDGEAAF 58 Query: 118 SIIVEEILYPAMEDFQLDLMVGEG-PSARSVKINLSRFTLI-------AATTRVGLLT-N 168 + EE + A+ + L +G G P + L+ T++ A R GL + Sbjct: 59 RALEEEAVATALAEHDGVLALGGGAPLTPGTRARLAEHTVVFLGVGLAAGVQRTGLSSAR 118 Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 PL G+ R F ++ D + V R + D EI Sbjct: 119 PLL--AGVNPRATFKKLLDERVPVYREVATVEIVTDDRTPSEI 159 >gi|289423563|ref|ZP_06425364.1| recombination factor protein RarA [Peptostreptococcus anaerobius 653-L] gi|289156065|gb|EFD04729.1| recombination factor protein RarA [Peptostreptococcus anaerobius 653-L] Length = 423 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ +E+ GQ K+F + +++F G PG+GKTT+A+++A +F Sbjct: 8 RPKKIEDIVGQSHIVGKGKLFNNMLEKNYYP--NMIFFGGPGIGKTTVAEILASSADKSF 65 Query: 83 R--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 + S + + + L++ + +L+IDEI + ++ + +E + L+ Sbjct: 66 YKINASNSSLEDIKKVIGQIGKLDNSNGILLYIDEIQSFNKKQQQSILEFIEKGDITLIA 125 Query: 139 G--EGPSARSVKINLSRFTLI 157 E P K LSR +I Sbjct: 126 STTENPYHYVYKAILSRSVVI 146 >gi|282895979|ref|ZP_06304010.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] gi|281199089|gb|EFA73959.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] Length = 613 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224 >gi|239988693|ref|ZP_04709357.1| putative cell division protein FtsH [Streptomyces roseosporus NRRL 11379] Length = 684 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 182 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239 >gi|239929769|ref|ZP_04686722.1| cell division protein ftsH-like protein [Streptomyces ghanaensis ATCC 14672] gi|291438095|ref|ZP_06577485.1| cell division protein ftsH-like protein [Streptomyces ghanaensis ATCC 14672] gi|291340990|gb|EFE67946.1| cell division protein ftsH-like protein [Streptomyces ghanaensis ATCC 14672] Length = 668 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226 >gi|237747782|ref|ZP_04578262.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes OXCC13] gi|229379144|gb|EEO29235.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes OXCC13] Length = 423 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 116 NILLVGPTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQGCEYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 EKAQRGIVYIDEIDKIS 192 >gi|297192938|ref|ZP_06910336.1| cell division protein FtsH [Streptomyces pristinaespiralis ATCC 25486] gi|297151567|gb|EDY66565.2| cell division protein FtsH [Streptomyces pristinaespiralis ATCC 25486] Length = 680 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 180 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 237 >gi|224372652|ref|YP_002607024.1| endopeptidase clp ATP-binding chain a [Nautilia profundicola AmH] gi|223589193|gb|ACM92929.1| endopeptidase clp ATP-binding chain a [Nautilia profundicola AmH] Length = 720 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 30/175 (17%) Query: 3 DREGLLSR--NVSQEDA-DISLLRPRTLE-----EFTGQVEACSNLKVFIEAAKA----R 50 D EG++++ N+ +E A + + + R LE + GQ +A L I+ KA Sbjct: 402 DIEGIVAKIANIPKESASNNEIEKLRNLEGNLKAKVFGQDQAIKELVKVIKRKKAGLTRE 461 Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFR------------------STSGPVIAK 92 + + LFVGP G+GKT +A+ +A LGVNF S G V + Sbjct: 462 DKPIGSFLFVGPTGVGKTEIAKQLASILGVNFMRFDMSEYQEKHSVAKLIGSPPGYVGYE 521 Query: 93 AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 G L + VL +DEI + + +IL M++ L G R+V Sbjct: 522 KGGLLTEAIRKQPHTVLLLDEIEKAHPDIVQILLQVMDNASLTDNDGRKADFRNV 576 >gi|172036868|ref|YP_001803369.1| cell division protein [Cyanothece sp. ATCC 51142] gi|171698322|gb|ACB51303.1| cell division protein [Cyanothece sp. ATCC 51142] Length = 636 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ VA E GV F S SG Sbjct: 225 VLLIGPPGTGKTLLAKAVAGEAGVPFFSISG 255 >gi|146164901|ref|XP_001014311.2| Adenylate kinase family protein [Tetrahymena thermophila] gi|146145641|gb|EAR94066.2| Adenylate kinase family protein [Tetrahymena thermophila SB210] Length = 436 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 3/61 (4%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV---IAKAGDLAALLTNLEDRDVLFIDE 113 +L +GPPG G++TLA+ +A++ G+ + ST+ + IAK ++ + NL +R L DE Sbjct: 258 ILVIGPPGSGRSTLAKKLAQKYGLVYVSTTELISDQIAKKTEVGRVALNLLNRGELVPDE 317 Query: 114 I 114 I Sbjct: 318 I 318 >gi|120602776|ref|YP_967176.1| ATP-dependent protease La [Desulfovibrio vulgaris DP4] gi|120563005|gb|ABM28749.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16 [Desulfovibrio vulgaris DP4] Length = 821 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 89/228 (39%), Gaps = 67/228 (29%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+LA+ VA+ G F R + G V +A G + L Sbjct: 364 LCLVGPPGVGKTSLAKSVAKATGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 423 Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ + LF +DEI ++S + E+L P D LD+ Sbjct: 424 RVKHNNPLFCLDEIDKMSTDFRGDPSSALLEVLDPEQNSTFNDHYLDM-----------D 472 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198 +LS+ I + + PLQDR I IRL Y E E K + G Sbjct: 473 YDLSQVFFITTANSLHSIPLPLQDRMEI-IRLPGYLETEKRRIAHDFLLPKQVEAHGLAA 531 Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 + L ++D A EI +R + A + + REIA Sbjct: 532 SNLRISDNAVLEI-----------------IRSYTREAGVRNLEREIA 562 >gi|63054416|ref|NP_587809.2| 19S proteasome regulatory subunit Rpt4 (predicted) [Schizosaccharomyces pombe 972h-] gi|46397658|sp|O74445|PRS10_SCHPO RecName: Full=Probable 26S protease subunit rpt4 gi|157310490|emb|CAA20682.2| 19S proteasome regulatory subunit Rpt4 (predicted) [Schizosaccharomyces pombe] Length = 388 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA LGVNF + S ++ K G+ A ++ + + V Sbjct: 169 VLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCV 228 Query: 109 LFIDEI 114 +F+DEI Sbjct: 229 IFMDEI 234 >gi|11498895|ref|NP_070126.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304] gi|41688749|sp|O28972|Y1297_ARCFU RecName: Full=Cell division cycle protein 48 homolog AF_1297 gi|2649281|gb|AAB89948.1| cell division control protein 48, AAA family (cdc48-1) [Archaeoglobus fulgidus DSM 4304] Length = 733 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E+ +F SGP I G+ L + + + Sbjct: 219 VLLYGPPGTGKTLIAKAVANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKENAPSI 278 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 279 IFIDEIDSIAPKREEV 294 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E NF S GP Sbjct: 492 ILLFGPPGTGKTLLAKAVANESNANFISVKGP 523 >gi|304319807|ref|YP_003853450.1| ATP-dependent protease ATP-binding subunit [Parvularcula bermudensis HTCC2503] gi|303298710|gb|ADM08309.1| ATP-dependent protease ATP-binding subunit [Parvularcula bermudensis HTCC2503] Length = 437 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 124 AKSNILLVGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQSAD 183 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 184 YNVERAQRGIVYIDEIDKIS 203 >gi|167036973|ref|YP_001664551.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115391|ref|YP_004185550.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855807|gb|ABY94215.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928482|gb|ADV79167.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 510 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 16/121 (13%) Query: 10 RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61 N+++ D S + T ++ G E LKV I+ K A+ +LF G Sbjct: 65 NNITETKEDTSHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYG 124 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDE 113 PPG GKT LA +A E F S SG V A + AL + ++FIDE Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDE 184 Query: 114 I 114 I Sbjct: 185 I 185 >gi|116510861|ref|YP_808077.1| FtsH-2 peptidase [Lactococcus lactis subsp. cremoris SK11] gi|116106515|gb|ABJ71655.1| membrane protease FtsH catalytic subunit [Lactococcus lactis subsp. cremoris SK11] Length = 695 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 229 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|113476779|ref|YP_722840.1| FtsH peptidase [Trichodesmium erythraeum IMS101] gi|122964671|sp|Q10ZF7|FTSH_TRIEI RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|110167827|gb|ABG52367.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Trichodesmium erythraeum IMS101] Length = 667 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 239 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 269 >gi|186684974|ref|YP_001868170.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] gi|186467426|gb|ACC83227.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] Length = 613 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224 >gi|331090537|ref|ZP_08339390.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 2_1_46FAA] gi|330405880|gb|EGG85408.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 2_1_46FAA] Length = 415 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 28/130 (21%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGP 62 +I+LL+P ++ F GQ EA L V + R A ++L +GP Sbjct: 57 GEINLLKPEEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELHKSNILMLGP 116 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------V 108 G GKT LAQ +A+ L V F + +AG + + N+ D D + Sbjct: 117 TGCGKTLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIQRAEYGI 176 Query: 109 LFIDEIHRLS 118 ++IDEI +++ Sbjct: 177 IYIDEIDKIT 186 >gi|329770458|ref|ZP_08261837.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325] gi|328836313|gb|EGF85979.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325] Length = 566 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81 RP+T + GQ S LK IE + + H LF GP G GKT++A++ A E+ N Sbjct: 10 RPQTFNDIVGQNHIVSVLKNAIEKNQ-----ISHAYLFYGPRGTGKTSIAKIFANEVNKN 64 >gi|319405543|emb|CBI79162.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella sp. AR 15-3] Length = 424 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|297159329|gb|ADI09041.1| cell division protein ftsH-like protein [Streptomyces bingchenggensis BCW-1] Length = 678 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 182 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239 >gi|260439221|ref|ZP_05793037.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876] gi|292808236|gb|EFF67441.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876] Length = 646 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIE--AAKARAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ EA ++K ++ A+ A+ L VGPPG GKT LA+ VA E Sbjct: 194 TFKDVAGQEEAKESVKEIVDFLHNPAKYTAIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 253 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 254 GVPFFSLSG 262 >gi|257419844|ref|ZP_05596838.1| ATPase [Enterococcus faecalis T11] gi|257161672|gb|EEU91632.1| ATPase [Enterococcus faecalis T11] Length = 368 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 24/161 (14%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLEDRD-----V 108 H+L GPPG GKT+LA+ ++ ++G+ + G V + G A + + D V Sbjct: 119 HLLLYGPPGTGKTSLARFISLQVGLPLVTARLDGLVSSMLGSTAKNIRKIFDFASKQPCV 178 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF----TLIAATTRVG 164 LF+DE L+ I ++ E +L +V S+ N+ F LIAAT Sbjct: 179 LFLDEFDVLAKIRDD----KNELGELKRVVN------SLLQNIDSFDDNSILIAATNHPQ 228 Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205 LL + RF I+LN E E K +++ + +G+ T+ Sbjct: 229 LLDEAVWRRFDKVIKLNLPESEQRKELIE---EFSGVLTTN 266 >gi|298491599|ref|YP_003721776.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] gi|298233517|gb|ADI64653.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] Length = 645 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240 >gi|254385665|ref|ZP_05000988.1| cell division protein FtsH [Streptomyces sp. Mg1] gi|194344533|gb|EDX25499.1| cell division protein FtsH [Streptomyces sp. Mg1] Length = 673 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 180 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 237 >gi|170089903|ref|XP_001876174.1| predicted protein [Laccaria bicolor S238N-H82] gi|164649434|gb|EDR13676.1| predicted protein [Laccaria bicolor S238N-H82] Length = 361 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-----AKAGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ +A+E G F + + V+ ++ L A L +L + + Sbjct: 122 VLLFGPPGCGKTMLAKALAKESGATFINIAASVLTNKWYGESNKLVAGLFSLARKTQPSI 181 Query: 109 LFIDEI 114 +FIDEI Sbjct: 182 IFIDEI 187 >gi|146093972|ref|XP_001467097.1| AAA family ATPase-like protein [Leishmania infantum JPCM5] gi|134071461|emb|CAM70150.1| AAA family ATPase-like protein [Leishmania infantum JPCM5] Length = 1049 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL GPPG KT LA+ +A E +NF S GP V +K GD + ++ +R V Sbjct: 817 VLLYGPPGCSKTMLAKALANESHMNFISVKGPEVFSKWVGDSEKAVRDIFERARAASPCV 876 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 877 VFIDEL 882 >gi|110668990|ref|YP_658801.1| AAA-type ATPase [Haloquadratum walsbyi DSM 16790] gi|109626737|emb|CAJ53204.1| AAA-type ATPase [Haloquadratum walsbyi DSM 16790] Length = 491 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 22/26 (84%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF 82 +LFVGPPG GKTT+++ +A ELG+ F Sbjct: 246 ILFVGPPGTGKTTVSRALAHELGLPF 271 >gi|39998283|ref|NP_954234.1| ATP-dependent protease La [Geobacter sulfurreducens PCA] gi|39985229|gb|AAR36584.1| ATP-dependent protease La [Geobacter sulfurreducens PCA] Length = 819 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 33/177 (18%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA------- 93 F+ K R + +L FVGPPG+GKT+L + +AR LG F R + G V +A Sbjct: 345 FLAVRKLRKKMKGPILCFVGPPGVGKTSLGKSIARALGRKFVRISLGGVRDEAEIRGHRR 404 Query: 94 ---GDLAA-LLTNLE----DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137 G L ++ L+ + V +DE+ +L S + E+L P D Sbjct: 405 TYVGALPGRIIQGLKQAGSNNPVFMLDELDKLGADFRGDPSSALLEVLDPEQNHMFSDHY 464 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + ++ NLS IA + + PL DR + I L+ Y E+ I +R Sbjct: 465 I-------NLPFNLSNVMFIATANQYDTIPGPLLDRMEM-INLSGYTEEEKLEIAKR 513 >gi|22298276|ref|NP_681523.1| cell division protein [Thermosynechococcus elongatus BP-1] gi|22294455|dbj|BAC08285.1| cell division protein [Thermosynechococcus elongatus BP-1] Length = 631 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 212 VLLVGPPGTGKTMLAKAIAGEAGVPFFSISG 242 >gi|20093445|ref|NP_613292.1| replication factor C large subunit [Methanopyrus kandleri AV19] gi|42559499|sp|Q8TZC5|RFCL_METKA RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|19886264|gb|AAM01222.1| Replication factor C (ATPase involved in DNA replication) [Methanopyrus kandleri AV19] Length = 510 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFI-EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 + RPR+L+E Q EA L + E A+ VL GPPG GKT+ A +A + Sbjct: 5 VEKYRPRSLKELVNQDEAKKELAAWANEWARGSIPEPRAVLLHGPPGTGKTSAAYALAHD 64 Query: 78 LGVN 81 G + Sbjct: 65 FGWD 68 >gi|17232428|ref|NP_488976.1| cell division protein [Nostoc sp. PCC 7120] gi|17134074|dbj|BAB76635.1| cell division protein [Nostoc sp. PCC 7120] Length = 645 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240 >gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28] gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28] Length = 327 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S+E + RP +++ Q + +K + + H+LF GPPG GKTT+A Sbjct: 3 SEETLWVEKYRPSRIDDIIDQDHVKARVKEMLANGN-----IPHLLFFGPPGTGKTTMAL 57 Query: 73 VVAREL 78 +AREL Sbjct: 58 AIAREL 63 >gi|284929519|ref|YP_003422041.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] gi|284809963|gb|ADB95660.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] Length = 618 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228 >gi|282901690|ref|ZP_06309606.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] gi|281193453|gb|EFA68434.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] Length = 613 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224 >gi|239942227|ref|ZP_04694164.1| putative cell division protein FtsH [Streptomyces roseosporus NRRL 15998] gi|291445681|ref|ZP_06585071.1| cell division protein FtsH [Streptomyces roseosporus NRRL 15998] gi|291348628|gb|EFE75532.1| cell division protein FtsH [Streptomyces roseosporus NRRL 15998] Length = 673 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 171 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 228 >gi|297201400|ref|ZP_06918797.1| cell division protein FtsH [Streptomyces sviceus ATCC 29083] gi|197713809|gb|EDY57843.1| cell division protein FtsH [Streptomyces sviceus ATCC 29083] Length = 666 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 169 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226 >gi|195346897|ref|XP_002039991.1| GM15603 [Drosophila sechellia] gi|194135340|gb|EDW56856.1| GM15603 [Drosophila sechellia] Length = 739 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA LK +E K+ + + VL VGPPG GKT LA+ VA E Sbjct: 301 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 360 Query: 79 GVNFRSTSGP 88 V F +GP Sbjct: 361 KVPFFHAAGP 370 >gi|186489957|ref|NP_175433.2| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|332194397|gb|AEE32518.1| P-loop containing NTPase domain-containing protein [Arabidopsis thaliana] Length = 1003 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E G NF S +G + GD L L + Sbjct: 752 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVI 811 Query: 109 LFIDEIHRL 117 +F+DEI L Sbjct: 812 IFVDEIDSL 820 >gi|167839738|ref|ZP_02466422.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia thailandensis MSMB43] Length = 660 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 266 IFIDELDALGKV 277 >gi|153812538|ref|ZP_01965206.1| hypothetical protein RUMOBE_02937 [Ruminococcus obeum ATCC 29174] gi|149831463|gb|EDM86551.1| hypothetical protein RUMOBE_02937 [Ruminococcus obeum ATCC 29174] Length = 595 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 30/60 (50%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE LK + A V+ VGPPG GKT LA+ VA E GV F S SG Sbjct: 153 EEKEDLVEVVDFLKAPQKYTNVGARIPKGVILVGPPGTGKTLLAKAVAGEAGVPFFSISG 212 >gi|145239089|ref|XP_001392191.1| hypothetical protein ANI_1_94074 [Aspergillus niger CBS 513.88] gi|134076694|emb|CAK45225.1| unnamed protein product [Aspergillus niger] Length = 736 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N +++ A A VL GPPG GKT LA+ VA Sbjct: 476 ADIGALGGIRDELSTAIVEPIKNPEIY---ANVGITAPTGVLLWGPPGCGKTLLAKAVAN 532 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 533 ESRANFISVKGP 544 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A A ELGV F S S P + Sbjct: 206 VLLHGPPGCGKTMIANAFAAELGVPFISISAPSV 239 >gi|145589118|ref|YP_001155715.1| ATP-dependent protease ATP-binding subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|226706594|sp|A4SXD7|CLPX_POLSQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|145047524|gb|ABP34151.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 453 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD------------LAALL 100 A ++L +GP G GKT LAQ +AR L V F + +AG L A Sbjct: 140 AKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQACD 199 Query: 101 TNLE--DRDVLFIDEIHRLS 118 N+E R +++IDEI ++S Sbjct: 200 YNVEKAQRGIVYIDEIDKIS 219 >gi|83717168|ref|YP_439494.1| ATP-dependent metalloprotease FtsH [Burkholderia thailandensis E264] gi|167616072|ref|ZP_02384707.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia thailandensis Bt4] gi|257142620|ref|ZP_05590882.1| ATP-dependent metalloprotease FtsH [Burkholderia thailandensis E264] gi|83650993|gb|ABC35057.1| ATP-dependent metalloprotease, FtsH family [Burkholderia thailandensis E264] Length = 662 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 266 IFIDELDALGKV 277 >gi|66812244|ref|XP_640301.1| replication factor C subunit [Dictyostelium discoideum AX4] gi|74855117|sp|Q54ST4|RFC5_DICDI RecName: Full=Probable replication factor C subunit 5; AltName: Full=Activator 1 subunit 5 gi|60468315|gb|EAL66323.1| replication factor C subunit [Dictyostelium discoideum AX4] Length = 347 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+ L++ + + I+ L H+LF GPPG GKT+ Q +AR+L G N Sbjct: 31 RPKNLDDLIAHEDITQTITKLIDN-----NTLPHLLFYGPPGTGKTSTIQAIARKLYGDN 85 Query: 82 F 82 + Sbjct: 86 Y 86 >gi|328751836|gb|AEB39673.1| MIP17311p [Drosophila melanogaster] Length = 740 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA LK +E K+ + + VL VGPPG GKT LA+ VA E Sbjct: 302 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 Query: 79 GVNFRSTSGP 88 V F +GP Sbjct: 362 KVPFFHAAGP 371 >gi|307327053|ref|ZP_07606243.1| ATP-dependent metalloprotease FtsH [Streptomyces violaceusniger Tu 4113] gi|306887351|gb|EFN18347.1| ATP-dependent metalloprotease FtsH [Streptomyces violaceusniger Tu 4113] Length = 680 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 182 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239 >gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis] Length = 314 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 RP+ LE+ G E +KV E L H+L GPPG GKTT Sbjct: 10 RPQCLEDIVGNEETIKRMKVITETGN-----LPHILLAGPPGTGKTT 51 >gi|291562917|emb|CBL41733.1| AAA domain (dynein-related subfamily) [butyrate-producing bacterium SS3/4] Length = 514 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 34/106 (32%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-----------GPVIAK---AGD------- 95 VL +GPPG+GKT + + VARE G+ S + P I++ +G Sbjct: 36 VLLIGPPGIGKTQIMEQVARECGIGLVSYTITHHTRQSAIGLPFISEKTYSGKNVHVTEY 95 Query: 96 -----LAALLTNLED----RDVLFIDEIHRLSIIVEEILYPAMEDF 132 +AA+ +ED +LFIDEI+ V E L PAM F Sbjct: 96 TMSEIVAAIYNKIEDTGLSEGLLFIDEIN----CVSETLAPAMLQF 137 >gi|256750615|ref|ZP_05491501.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus CCSD1] gi|256750455|gb|EEU63473.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus CCSD1] Length = 510 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 16/121 (13%) Query: 10 RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61 N+++ D S + T ++ G E LKV I+ K A+ +LF G Sbjct: 65 NNITETKEDTSHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYG 124 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDE 113 PPG GKT LA +A E F S SG V A + AL + ++FIDE Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDE 184 Query: 114 I 114 I Sbjct: 185 I 185 >gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar] gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar] Length = 335 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 7 LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66 L SRN+ + RP+TL++ + S ++ FI + L H+LF GPPG G Sbjct: 9 LQSRNLPW----VEKYRPQTLDDLISHKDILSTIQKFISEDR-----LPHLLFYGPPGTG 59 Query: 67 KTTLAQVVAREL 78 KT+ A++L Sbjct: 60 KTSTVLASAKQL 71 >gi|168021024|ref|XP_001763042.1| predicted protein [Physcomitrella patens subsp. patens] gi|162685854|gb|EDQ72247.1| predicted protein [Physcomitrella patens subsp. patens] Length = 557 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 33/199 (16%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72 + + D++ + R E G + + ++ K + +A VL FVGPPG+GKT+LA Sbjct: 29 EHEVDLAAAKVRLDSEHYGLSKVKKRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLAS 88 Query: 73 VVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR-----DVLFIDEIHR 116 +A LG F R + G V +A G + L + R V+ +DEI + Sbjct: 89 SIAGALGRRFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGIKRVGVNNPVMLLDEIDK 148 Query: 117 --------LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 L+ + E+L P D + +V ++S+ +A R+ + Sbjct: 149 TGTDVRGDLASALLEVLDPEQNKTFNDHYL-------NVPFDVSKVVFLATANRMQSMPA 201 Query: 169 PLQDRFGIPIRLNFYEIED 187 PL DR I I L Y E+ Sbjct: 202 PLLDRMEI-IELPGYTCEE 219 >gi|222053541|ref|YP_002535903.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32] gi|221562830|gb|ACM18802.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32] Length = 586 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/34 (61%), Positives = 23/34 (67%) Query: 54 LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 179 LTGILLVGPPGTGKTLLARAVAGEAGVPFFSMSG 212 >gi|47210930|emb|CAF92729.1| unnamed protein product [Tetraodon nigroviridis] Length = 724 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 10/67 (14%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNF------RSTSGPVIAKAGDLAALLTNL----EDRD 107 L GPPGLGKTTLA ++A+ G N S V K D A + ++ E + Sbjct: 108 LLSGPPGLGKTTLAHIIAKHAGYNVVEINASDDRSAEVFQKRIDTATQMKSVLGVNEKPN 167 Query: 108 VLFIDEI 114 L IDEI Sbjct: 168 CLIIDEI 174 >gi|332706533|ref|ZP_08426594.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] gi|332354417|gb|EGJ33896.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] Length = 660 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 243 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 273 >gi|326921318|ref|XP_003206908.1| PREDICTED: 26S protease regulatory subunit 10B-like [Meleagris gallopavo] Length = 372 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED D+S E G E L+ IE E V L Sbjct: 101 LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 154 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 155 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 214 Query: 111 IDEI 114 +DEI Sbjct: 215 MDEI 218 >gi|291298362|ref|YP_003509640.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM 44728] gi|290567582|gb|ADD40547.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM 44728] Length = 671 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 9/70 (12%) Query: 26 TLEEFTGQVEACSNL---KVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARE 77 T ++ G EA L K F++ A+ +AL VL GPPG GKT LA+ VA E Sbjct: 178 TFDDVAGANEAVEELQEIKDFLQNP-AKYQALGAKIPKGVLLFGPPGTGKTLLARAVAGE 236 Query: 78 LGVNFRSTSG 87 GV F S SG Sbjct: 237 AGVPFYSISG 246 >gi|282896488|ref|ZP_06304508.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] gi|281198594|gb|EFA73475.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] Length = 645 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240 >gi|296089772|emb|CBI39591.3| unnamed protein product [Vitis vinifera] Length = 964 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 32/191 (16%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV-GPPGLGKTT 69 N S E+ D+ + E+ G + + FI K R + ++ + GPPG+GKT+ Sbjct: 416 NYSDENFDVMQAQQILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLSGPPGVGKTS 475 Query: 70 LAQVVARELGVN-FRSTSGPVI--------------AKAGDLAALLTNLEDRDVL-FIDE 113 + + +AR L FR + G + A G + L N+ + L IDE Sbjct: 476 IGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDE 535 Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 I +L + + E+L P LD + V I+LS+ + V + Sbjct: 536 IDKLGKGHAGDPASALLELLDPEQNANFLDHYL-------DVPIDLSKVLFVCTANIVEM 588 Query: 166 LTNPLQDRFGI 176 + NPL DR + Sbjct: 589 IPNPLLDRMEV 599 >gi|225427356|ref|XP_002282657.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297742183|emb|CBI33970.3| unnamed protein product [Vitis vinifera] Length = 888 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 33/206 (16%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72 + + D+ + R + G V+ + ++ K + +A VL FVGPPG+GKT+LA Sbjct: 361 EHELDLRAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLAS 420 Query: 73 VVARELGVNFRSTSGPVIAKAGDL------------AALLTNLE----DRDVLFIDEIHR 116 +A LG F S + D+ L+ L+ V+ +DEI + Sbjct: 421 SIASALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIEGLKRVGVSNPVMLLDEIDK 480 Query: 117 LSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 V E+L P D + +V +LS+ +A RV + Sbjct: 481 TGSDVRGDPASALLEVLDPEQNKTFNDHYL-------NVPYDLSKVIFVATANRVQPIPP 533 Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL DR + I L Y E+ I R Sbjct: 534 PLLDRMEV-IELPGYTPEEKLKIAMR 558 >gi|222148265|ref|YP_002549222.1| ATP-dependent protease ATP-binding subunit ClpX [Agrobacterium vitis S4] gi|254763828|sp|B9JVD6|CLPX_AGRVS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|221735253|gb|ACM36216.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis S4] Length = 425 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 113 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 172 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192 >gi|218780718|ref|YP_002432036.1| ATP-dependent protease La [Desulfatibacillum alkenivorans AK-01] gi|218762102|gb|ACL04568.1| ATP-dependent protease La [Desulfatibacillum alkenivorans AK-01] Length = 785 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 42/189 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNL- 103 + F GPPG GKT+L + +AR LG NF R + G V +A G L ++ N+ Sbjct: 364 ICFAGPPGTGKTSLGRSIARALGRNFVRISLGGVRDEAEIRGHRRTYVGALPGRIIQNIR 423 Query: 104 ---EDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + + +DE+ +L S + E+L P D D + V +LS Sbjct: 424 RAESNNPIFMLDEVDKLGNDFRGDPSSALLEVLDPEQNDTFSDHYL-------DVPFDLS 476 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202 + IA + + L+DR + I L Y +E+ I ++ G K + + Sbjct: 477 KVMFIATANILDTIPPALRDRMEV-IELLGYTMEEKVKIAKKYLIPRQRDAHGLKASDIK 535 Query: 203 VTDEAACEI 211 +TD A +I Sbjct: 536 ITDGAIKQI 544 >gi|195585855|ref|XP_002082694.1| GD25099 [Drosophila simulans] gi|194194703|gb|EDX08279.1| GD25099 [Drosophila simulans] Length = 603 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA LK +E K+ + + VL VGPPG GKT LA+ VA E Sbjct: 213 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 272 Query: 79 GVNFRSTSGP 88 V F +GP Sbjct: 273 KVPFFHAAGP 282 >gi|195488933|ref|XP_002092523.1| GE11626 [Drosophila yakuba] gi|194178624|gb|EDW92235.1| GE11626 [Drosophila yakuba] Length = 735 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA LK +E K+ + + VL VGPPG GKT LA+ VA E Sbjct: 297 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 356 Query: 79 GVNFRSTSGP 88 V F +GP Sbjct: 357 KVPFFHAAGP 366 >gi|182437881|ref|YP_001825600.1| putative cell division protein FtsH [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778517|ref|ZP_08237782.1| ATP-dependent metalloprotease FtsH [Streptomyces cf. griseus XylebKG-1] gi|178466397|dbj|BAG20917.1| putative cell division protein FtsH [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658850|gb|EGE43696.1| ATP-dependent metalloprotease FtsH [Streptomyces cf. griseus XylebKG-1] Length = 688 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 182 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239 >gi|169830305|ref|YP_001716287.1| ATP-dependent metalloprotease FtsH [Candidatus Desulforudis audaxviator MP104C] gi|169637149|gb|ACA58655.1| ATP-dependent metalloprotease FtsH [Candidatus Desulforudis audaxviator MP104C] Length = 620 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 195 VLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 254 Query: 109 LFIDEI 114 +FIDEI Sbjct: 255 VFIDEI 260 >gi|160888887|ref|ZP_02069890.1| hypothetical protein BACUNI_01307 [Bacteroides uniformis ATCC 8492] gi|156861786|gb|EDO55217.1| hypothetical protein BACUNI_01307 [Bacteroides uniformis ATCC 8492] Length = 746 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 14 QEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGK 67 +ED ++L L R GQ EA + ++ +KA + L +LFVGP G+GK Sbjct: 440 KEDDTVALESLHERISSRIYGQEEAVRQVVEAVQMSKAGLLDENKPLASLLFVGPTGVGK 499 Query: 68 TTLAQVVARELGV 80 T +A+V+A ELG+ Sbjct: 500 TEVAKVLAAELGI 512 >gi|138893741|ref|YP_001124194.1| cell-division protein and general stress protein [Geobacillus thermodenitrificans NG80-2] gi|196250783|ref|ZP_03149470.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16] gi|134265254|gb|ABO65449.1| Cell-division protein and general stress protein(class III heat-shock) [Geobacillus thermodenitrificans NG80-2] gi|196209733|gb|EDY04505.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16] Length = 631 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228 >gi|167039684|ref|YP_001662669.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514] gi|300915067|ref|ZP_07132382.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561] gi|307724990|ref|YP_003904741.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513] gi|310943101|sp|B0K657|FTSH2_THEPX RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|166853924|gb|ABY92333.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514] gi|300888791|gb|EFK83938.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561] gi|307582051|gb|ADN55450.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513] Length = 510 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 16/121 (13%) Query: 10 RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61 N+++ D S + T ++ G E LKV I+ K A+ +LF G Sbjct: 65 NNITETKEDTSHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYG 124 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDE 113 PPG GKT LA +A E F S SG V A + AL + ++FIDE Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDE 184 Query: 114 I 114 I Sbjct: 185 I 185 >gi|57529874|ref|NP_001006494.1| 26S protease regulatory subunit S10B [Gallus gallus] gi|53130584|emb|CAG31621.1| hypothetical protein RCJMB04_8n6 [Gallus gallus] Length = 389 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED D+S E G E L+ IE E V L Sbjct: 118 LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 231 Query: 111 IDEI 114 +DEI Sbjct: 232 MDEI 235 >gi|81299807|ref|YP_400015.1| FtsH peptidase [Synechococcus elongatus PCC 7942] gi|81168688|gb|ABB57028.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Synechococcus elongatus PCC 7942] Length = 632 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 204 VLLVGPPGTGKTLLAKAIAGEAGVPFFSMSG 234 >gi|56750555|ref|YP_171256.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] gi|56685514|dbj|BAD78736.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] Length = 632 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 204 VLLVGPPGTGKTLLAKAIAGEAGVPFFSMSG 234 >gi|312880129|ref|ZP_07739929.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Aminomonas paucivorans DSM 12260] gi|310783420|gb|EFQ23818.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Aminomonas paucivorans DSM 12260] Length = 428 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +VL VGP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 122 NVLLVGPTGCGKTLLAQSLAKLLKVPFAIADATTLTEAGYVGEDVENILVRLLQAADYDP 181 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 182 KTAERGIIYIDEIDKIS 198 >gi|307298980|ref|ZP_07578782.1| DNA polymerase III, subunits gamma and tau [Thermotogales bacterium mesG1.Ag.4.2] gi|306915405|gb|EFN45790.1| DNA polymerase III, subunits gamma and tau [Thermotogales bacterium mesG1.Ag.4.2] Length = 485 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 36/247 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPR E GQ + L IE K L H +F G G GKTT A+++A+ L Sbjct: 10 RPRNFNELVGQDQVKEILGKAIEKNK-----LSHAYIFSGSRGTGKTTSARILAKMLNCL 64 Query: 82 FRSTSGPV----IAKAGDLAALLTNLEDRDVLF--IDEIHRLSIIVEEILYPAMEDF--- 132 + P KA D ++ + +E + IDEI ++ V P M F Sbjct: 65 SEGSEKPCGVCDSCKAIDSSSHMDVVELDAASYRGIDEIRKIRDAVS--YRPVMGKFKVY 122 Query: 133 ---QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGI----PIRLNFY 183 + ++ E +A ++++ R I ATT + + + R I P+R Sbjct: 123 IIDEFHMLTREAFNALLKTLEEPPDRVVFILATTNLEKVPETILSRCQIFYFKPLRE--- 179 Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 ED+ T ++R A+ L ++A I+ + G R A L+ RV ++++ + Sbjct: 180 --EDIVTYLERIARAEELQYDEKALRYISKAAHGGMRDAVNLMERV-----ISYSGNVKE 232 Query: 244 EIADAAL 250 E A AL Sbjct: 233 EAARTAL 239 >gi|302327390|gb|ADL26591.1| cell division protein FtsH [Fibrobacter succinogenes subsp. succinogenes S85] Length = 676 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 36/209 (17%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VL 109 L VGPPG GKT LA+ VA E GV F S SG + G A+ + +L + +L Sbjct: 207 LLVGPPGTGKTLLARAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFETGKKNAPCIL 266 Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LIA 158 FIDEI + Q +G G R +N + FT LIA Sbjct: 267 FIDEIDAVG-------------RQRGAGLGGGHDEREQTLNQLLVEMDGFTANEGVILIA 313 Query: 159 ATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216 AT R +L L RF I + +++ + I++ K + + D+ ++ ++ Sbjct: 314 ATNRPDVLDKALLRPGRFDRQIVVGLPDLKGREEILKVHLKKRKVPLGDD--VDVKAVAK 371 Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREI 245 GTP +AG L + + A + A+ +++ Sbjct: 372 GTPGLAGADLENLVNEAALLAARFNNKKV 400 >gi|284173019|ref|YP_003406400.1| ATPase AAA [Haloterrigena turkmenica DSM 5511] gi|284017779|gb|ADB63727.1| AAA ATPase central domain protein [Haloterrigena turkmenica DSM 5511] Length = 317 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 20/75 (26%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------------ 104 +LF GPPG GKT A+ +A ELG + S AGD+ + N Sbjct: 112 ILFYGPPGTGKTLFARAIAGELGHPYLELS------AGDIKSRWVNESTEQVNQLFAEAA 165 Query: 105 --DRDVLFIDEIHRL 117 DR V+FIDEI L Sbjct: 166 QFDRCVIFIDEIDAL 180 >gi|261417160|ref|YP_003250843.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373616|gb|ACX76361.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp. succinogenes S85] Length = 696 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 36/209 (17%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VL 109 L VGPPG GKT LA+ VA E GV F S SG + G A+ + +L + +L Sbjct: 227 LLVGPPGTGKTLLARAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFETGKKNAPCIL 286 Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LIA 158 FIDEI + Q +G G R +N + FT LIA Sbjct: 287 FIDEIDAVG-------------RQRGAGLGGGHDEREQTLNQLLVEMDGFTANEGVILIA 333 Query: 159 ATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216 AT R +L L RF I + +++ + I++ K + + D+ ++ ++ Sbjct: 334 ATNRPDVLDKALLRPGRFDRQIVVGLPDLKGREEILKVHLKKRKVPLGDD--VDVKAVAK 391 Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREI 245 GTP +AG L + + A + A+ +++ Sbjct: 392 GTPGLAGADLENLVNEAALLAARFNNKKV 420 >gi|282933688|ref|ZP_06339046.1| cell division protease FtsH [Lactobacillus jensenii 208-1] gi|297205112|ref|ZP_06922508.1| cell division protein FtsH [Lactobacillus jensenii JV-V16] gi|281302178|gb|EFA94422.1| cell division protease FtsH [Lactobacillus jensenii 208-1] gi|297149690|gb|EFH29987.1| cell division protein FtsH [Lactobacillus jensenii JV-V16] Length = 711 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 229 VLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTSPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|222623647|gb|EEE57779.1| hypothetical protein OsJ_08323 [Oryza sativa Japonica Group] Length = 612 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107 VLF GPPG GKT+ A+V+A++ GV +I G + +L +L D Sbjct: 383 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANDLPDGG 442 Query: 108 VLFIDEI 114 ++F+DE+ Sbjct: 443 IIFLDEV 449 >gi|241587680|ref|XP_002403757.1| conserved hypothetical protein [Ixodes scapularis] gi|215502246|gb|EEC11740.1| conserved hypothetical protein [Ixodes scapularis] Length = 458 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 GQ +A + IE +++ A VLF GPPG GKT +A +A+ELG Sbjct: 41 LVGQEQAREAAGIIIELIRSKKMAGRAVLFAGPPGTGKTAIALAIAQELGTK 92 >gi|169350636|ref|ZP_02867574.1| hypothetical protein CLOSPI_01408 [Clostridium spiroforme DSM 1552] gi|169292690|gb|EDS74823.1| hypothetical protein CLOSPI_01408 [Clostridium spiroforme DSM 1552] Length = 420 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 S +RP+ L + GQ + + + + ++ G PG GKTT+A +A +L Sbjct: 7 SRMRPKNLCDVIGQQHLVGENSILTKIVEKKHPF--SIILYGNPGCGKTTIANALANDLN 64 Query: 80 VN---FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131 + F +++G K D+ L + + IDEIHRL+ ++ L ME+ Sbjct: 65 IPCRFFNASTGN--KKEMDIIIEEAKLCNGLFIIIDEIHRLNKARQDDLLSYMEN 117 >gi|49475381|ref|YP_033422.1| ATP-dependent protease ATP-binding subunit [Bartonella henselae str. Houston-1] gi|61211490|sp|Q6G3Z2|CLPX_BARHE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|49238187|emb|CAF27397.1| ATP-dependent clp protease ATP-binding subunit clpX [Bartonella henselae str. Houston-1] Length = 424 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|115448583|ref|NP_001048071.1| Os02g0740300 [Oryza sativa Japonica Group] gi|46390305|dbj|BAD15754.1| putative AAA family ATPase [Oryza sativa Japonica Group] gi|113537602|dbj|BAF09985.1| Os02g0740300 [Oryza sativa Japonica Group] gi|215695439|dbj|BAG90630.1| unnamed protein product [Oryza sativa Japonica Group] Length = 611 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107 VLF GPPG GKT+ A+V+A++ GV +I G + +L +L D Sbjct: 382 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANDLPDGG 441 Query: 108 VLFIDEI 114 ++F+DE+ Sbjct: 442 IIFLDEV 448 >gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex] Length = 330 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L++ + S ++ FI + L H+LF GPPG GKT+ A+EL Sbjct: 14 RPKQLDDLISHQDIISTIRKFINENR-----LPHLLFYGPPGTGKTSTILACAKEL 64 >gi|315274601|ref|ZP_07869471.1| putative cell division protease [Listeria marthii FSL S4-120] gi|313615771|gb|EFR89029.1| putative cell division protease [Listeria marthii FSL S4-120] Length = 270 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 246 >gi|313241103|emb|CBY33401.1| unnamed protein product [Oikopleura dioica] Length = 793 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 32/157 (20%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS--------------- 86 FI ++ R +L F GPPG GKT++A+ +AR LG + S Sbjct: 355 FICTSQLRGSVQGKILCFHGPPGTGKTSIAKSIARSLGRKYYRFSVGGMSDVAEIKGHRR 414 Query: 87 GPVIAKAGDLAALLTNLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137 V A G L L + + ++ IDEI +L S + E+L P LD Sbjct: 415 TYVGAMPGKLVQCLKKTQSENPLILIDEIDKLGRGYQGDPSSALLELLDPEQNVGFLDHY 474 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174 + V I+LS+ I + ++ PL+DR Sbjct: 475 L-------DVPIDLSKALFICTANDLSTISGPLRDRM 504 >gi|309791814|ref|ZP_07686301.1| AAA family ATPase, CDC48 subfamily protein [Oscillochloris trichoides DG6] gi|308226136|gb|EFO79877.1| AAA family ATPase, CDC48 subfamily protein [Oscillochloris trichoides DG6] Length = 710 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 16/95 (16%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105 +A VL GPPG GKT +A+ VA E +F + +GP I A +L + Sbjct: 215 DAPKGVLLYGPPGSGKTLIARAVANETSAHFVTINGPEIIDKLYGASEANLRGIFDEARK 274 Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138 R ++FIDEI + + P ED D V Sbjct: 275 RAPAIIFIDEI--------DAIAPKREDLSGDRQV 301 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +ARE NF S GP Sbjct: 495 VLLYGPPGTGKTLLAKALARESEANFISVKGP 526 >gi|302559295|ref|ZP_07311637.1| cell division protein [Streptomyces griseoflavus Tu4000] gi|302476913|gb|EFL40006.1| cell division protein [Streptomyces griseoflavus Tu4000] Length = 668 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226 >gi|302846122|ref|XP_002954598.1| hypothetical protein VOLCADRAFT_82864 [Volvox carteri f. nagariensis] gi|300260017|gb|EFJ44239.1| hypothetical protein VOLCADRAFT_82864 [Volvox carteri f. nagariensis] Length = 271 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ VA E G NF S + +A + L + V Sbjct: 22 VLLFGPPGTGKTMLAKAVASECGANFLYVSLSSVTSKWFGEAEKYIKAVFTLAHKIAPSV 81 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 82 IFVDEVDSL 90 >gi|289676665|ref|ZP_06497555.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv. syringae FF5] Length = 513 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 95 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 154 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 155 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 203 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++LS+ + + + PL DR + IRL+ Y E+ I +R Sbjct: 204 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKR 248 >gi|288926550|ref|ZP_06420468.1| cell division cycle protein [Prevotella buccae D17] gi|288336692|gb|EFC75060.1| cell division cycle protein [Prevotella buccae D17] Length = 594 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRS------TSGPVIAKAGDLAALLTNLEDR--DV 108 +L GPPG GKT A+ A E+G NF S V A ++A + E+ V Sbjct: 357 MLLYGPPGCGKTFFAKHFAEEVGFNFMCITPATLKSRYVNATQENIAKMFKEAEENAPTV 416 Query: 109 LFIDEIHRL 117 +FIDE++ L Sbjct: 417 IFIDEMNEL 425 >gi|255939672|ref|XP_002560605.1| Pc16g02330 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585228|emb|CAP92903.1| Pc16g02330 [Penicillium chrysogenum Wisconsin 54-1255] Length = 727 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N ++ A A VL GPPG GKT LA+ VA Sbjct: 467 ADIGALGGIRDELVTAIVEPIKNPDIY---ANVGITAPTGVLLWGPPGCGKTLLAKAVAN 523 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 524 ESRANFISVKGP 535 Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108 VL GPPG GKT +A A ELGV F S S P + +G+ AL E+ + Sbjct: 198 VLLHGPPGCGKTLIANAFAAELGVPFISISAPSVVSGMSGESEKALREYFEEAKRLAPCL 257 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 258 IFIDEIDAIT 267 >gi|167770587|ref|ZP_02442640.1| hypothetical protein ANACOL_01933 [Anaerotruncus colihominis DSM 17241] gi|167667182|gb|EDS11312.1| hypothetical protein ANACOL_01933 [Anaerotruncus colihominis DSM 17241] Length = 603 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGEASVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 VFIDEI 266 >gi|154253669|ref|YP_001414493.1| ATP-dependent protease ATP-binding subunit ClpX [Parvibaculum lavamentivorans DS-1] gi|171769684|sp|A7HY53|CLPX_PARL1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|154157619|gb|ABS64836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parvibaculum lavamentivorans DS-1] Length = 421 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189 >gi|75908451|ref|YP_322747.1| FtsH-2 peptidase [Anabaena variabilis ATCC 29413] gi|75702176|gb|ABA21852.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC 29413] Length = 645 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240 >gi|322375632|ref|ZP_08050144.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. C300] gi|321279340|gb|EFX56381.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. C300] Length = 410 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|298507219|gb|ADI85942.1| ATP-dependent Lon protease (La) [Geobacter sulfurreducens KN400] Length = 819 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 33/177 (18%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA------- 93 F+ K R + +L FVGPPG+GKT+L + +AR LG F R + G V +A Sbjct: 345 FLAVRKLRKKMKGPILCFVGPPGVGKTSLGKSIARALGRKFVRISLGGVRDEAEIRGHRR 404 Query: 94 ---GDLAA-LLTNLE----DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137 G L ++ L+ + V +DE+ +L S + E+L P D Sbjct: 405 TYVGALPGRIIQGLKQAGSNNPVFMLDELDKLGADFRGDPSSALLEVLDPEQNHMFSDHY 464 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + ++ NLS IA + + PL DR + I L+ Y E+ I +R Sbjct: 465 I-------NLPFNLSNVMFIATANQYDTIPGPLLDRMEM-INLSGYTEEEKLEIAKR 513 >gi|317050718|ref|YP_004111834.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfurispirillum indicum S5] gi|316945802|gb|ADU65278.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfurispirillum indicum S5] Length = 429 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 125 NILLIGPTGSGKTLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKLLQSCDFDV 184 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 185 ERAQRGIIYIDEIDKIS 201 >gi|301099514|ref|XP_002898848.1| lon protease, putative [Phytophthora infestans T30-4] gi|262104554|gb|EEY62606.1| lon protease, putative [Phytophthora infestans T30-4] Length = 807 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 33/197 (16%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 ++E+ D++ + E+ G + + FI +K + + ++ FVGPPG+GKT++ Sbjct: 416 TEENFDLAKAKQILDEDHYGLKDIKERILEFIAVSKLKGDVQGKIICFVGPPGVGKTSIG 475 Query: 72 QVVARELGVNFRSTS---------------GPVIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L F S V A G + L + + + ++ IDEI Sbjct: 476 KSIARSLNREFYRFSVGGLSDVAEIKGHRRTYVGAMPGKIIQCLKSTQSSNPLILIDEID 535 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 +L + + E+L P+ +D + V ++LSR I + Sbjct: 536 KLGRGYQGDPASALLELLDPSQNSGFVDHYM-------DVPVDLSRVLFICTANVTDTIP 588 Query: 168 NPLQDRFGIPIRLNFYE 184 PL DR + +RL+ Y+ Sbjct: 589 GPLLDRMEV-LRLSGYD 604 >gi|256852016|ref|ZP_05557403.1| cell division protein [Lactobacillus jensenii 27-2-CHN] gi|260661415|ref|ZP_05862328.1| cell division protein [Lactobacillus jensenii 115-3-CHN] gi|256615428|gb|EEU20618.1| cell division protein [Lactobacillus jensenii 27-2-CHN] gi|260547870|gb|EEX23847.1| cell division protein [Lactobacillus jensenii 115-3-CHN] Length = 715 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 233 VLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTSPSI 292 Query: 109 LFIDEI 114 +FIDEI Sbjct: 293 IFIDEI 298 >gi|297543594|ref|YP_003675896.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841369|gb|ADH59885.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 516 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 40/263 (15%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81 RP++ +E GQ LK + + + H LF G G GKT++A++ A+ VN Sbjct: 10 RPKSFKEVVGQEHIVKTLK-----NQIKLNRIGHAYLFTGTRGTGKTSIAKIFAK--AVN 62 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDFQLD 135 + + + D+ + N DVL ID S+ + E ++Y P+ +++ Sbjct: 63 CLNNTEGEPCNSCDICHAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQTKYKVY 122 Query: 136 L-----MVGEGPSA---RSVKINLSRFTLIAATTRVGLLTNPLQDRFG------IPIRLN 181 + M+ G ++++ S I ATT L + + R IP RL Sbjct: 123 IIDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL- 181 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 + + R +G+ + D+ IA+ G+ R A LL + + E I Sbjct: 182 ------IAQNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLEQCISYKE----GFI 231 Query: 242 TREIADAALLRLAIDKMGFDQLD 264 T E +L +A D+M F LD Sbjct: 232 TYEDV-CEMLGVANDEMLFSLLD 253 >gi|257051274|ref|YP_003129107.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM 12940] gi|256690037|gb|ACV10374.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM 12940] Length = 754 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 E+ VL GPPG GKT LA+ VA E NF S GP Sbjct: 496 ESAKGVLLYGPPGTGKTLLAKAVANEAQSNFISVKGP 532 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E+ F + SGP I G+ L + D + Sbjct: 228 VLLHGPPGTGKTLMAKAVANEIDAYFTTISGPEIMSKYYGESEEQLREMFDEAEENAPAI 287 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 288 VFIDEIDSIA 297 >gi|168034706|ref|XP_001769853.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678962|gb|EDQ65415.1| predicted protein [Physcomitrella patens subsp. patens] Length = 635 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|121601766|ref|YP_988861.1| ATP-dependent protease ATP-binding subunit [Bartonella bacilliformis KC583] gi|166214756|sp|A1USA8|CLPX_BARBK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|120613943|gb|ABM44544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella bacilliformis KC583] Length = 424 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|28209884|ref|NP_780828.1| ATP-dependent protease LA [Clostridium tetani E88] gi|28202319|gb|AAO34765.1| ATP-dependent protease LA [Clostridium tetani E88] Length = 628 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 74/199 (37%), Gaps = 54/199 (27%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-- 77 SLLRP E GQ A +L +K + H++ GPPG+GKTT A++ E Sbjct: 160 SLLRPEEFPEIVGQEIAIKSL-----LSKVASPYPQHIILYGPPGVGKTTAARLALEEGK 214 Query: 78 --------------------LGVNFRSTSGPVIAKAG---------DLAAL--------L 100 L + R + P++ DLA + L Sbjct: 215 RLNNTPFEEDAKFIEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAEVGIPEPKPGL 274 Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINL-------- 151 VLFIDEI L I++ L +ED +++ P ++ + Sbjct: 275 VTEAHGGVLFIDEIGELDYILQNKLLKVLEDKRVEFSSSYYDPDDENIPKYIKYLFDKGA 334 Query: 152 -SRFTLIAATTRVGLLTNP 169 + F LI ATTR NP Sbjct: 335 PADFILIGATTREPSEINP 353 >gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis] Length = 335 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L++ + S ++ FI K L H+LF GPPG GKT+ AR+L Sbjct: 21 RPQKLDDLISHKDILSTIQRFISEDK-----LPHLLFYGPPGTGKTSTILACARQL 71 >gi|319407113|emb|CBI80750.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella sp. 1-1C] Length = 424 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|310816209|ref|YP_003964173.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium vulgare Y25] gi|308754944|gb|ADO42873.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium vulgare Y25] Length = 422 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 32 GQVEACSNLKVFIE--------AAKARAE---ALDHVLFVGPPGLGKTTLAQVVARELGV 80 GQV A L V + AAK+ E A ++L +GP G GKT LAQ +AR L V Sbjct: 79 GQVHAKRVLSVAVHNHYKRLNHAAKSNNEIELAKSNILLIGPTGSGKTLLAQTLARILDV 138 Query: 81 NFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118 F + +AG + + N+ R +++IDE+ +++ Sbjct: 139 PFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIVYIDEVDKIT 190 >gi|295106550|emb|CBL04093.1| membrane protease FtsH catalytic subunit [Gordonibacter pamelaeae 7-10-1-b] Length = 781 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 L VGPPG GKT LA+ VA E GV F S SG V A + L +D + Sbjct: 256 CLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFQQAKDASPAI 315 Query: 109 LFIDEI 114 +FIDEI Sbjct: 316 IFIDEI 321 >gi|284928911|ref|YP_003421433.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] gi|284809370|gb|ADB95075.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] Length = 586 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 172 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 202 >gi|282866362|ref|ZP_06275407.1| ATP-dependent metalloprotease FtsH [Streptomyces sp. ACTE] gi|282558758|gb|EFB64315.1| ATP-dependent metalloprotease FtsH [Streptomyces sp. ACTE] Length = 685 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 182 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239 >gi|237708013|ref|ZP_04538494.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 9_1_42FAA] gi|265754200|ref|ZP_06089389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 3_1_33FAA] gi|229457999|gb|EEO63720.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 9_1_42FAA] gi|263234909|gb|EEZ20464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 3_1_33FAA] Length = 416 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 29/127 (22%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD---------HVLFVGPPGL 65 L +P+ ++EF GQ +A L V + R + +D +++ VG G Sbjct: 66 LPKPKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGT 125 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111 GKT LA+ +A+ L V F V+ +AG D+ +LLT L +R ++FI Sbjct: 126 GKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAERGIVFI 185 Query: 112 DEIHRLS 118 DEI +++ Sbjct: 186 DEIDKIA 192 >gi|257387828|ref|YP_003177601.1| ATPase AAA [Halomicrobium mukohataei DSM 12286] gi|257170135|gb|ACV47894.1| AAA family ATPase, CDC48 subfamily [Halomicrobium mukohataei DSM 12286] Length = 740 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K G+ L + E + Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEEAPSI 285 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 286 IFIDELDSIAPKREDV 301 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E NF S GP Sbjct: 499 VLLYGPPGTGKTLMAKAVANETDANFISVRGP 530 >gi|224369353|ref|YP_002603517.1| Lon3 [Desulfobacterium autotrophicum HRM2] gi|223692070|gb|ACN15353.1| Lon3 [Desulfobacterium autotrophicum HRM2] Length = 802 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 45/211 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAKA--------------GDLAALLT 101 +L VGPPG+GKT++ + +A LG FR + G + +A G L L Sbjct: 384 LLLVGPPGVGKTSIGKSIADALGRKFFRFSLGGMKDEAEIKGHRRTYIGALPGKLVHALK 443 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 N + + V+ +DE+ ++ + + E+L P + LD + + ++LS Sbjct: 444 NAKTSNPVIMLDEVDKIGMSYQGDPASALLEVLDPEQNENFLDHYL-------DLTLDLS 496 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202 + I + + PL DR IRL+ Y ++ I + G K L Sbjct: 497 KVLFICTANQPDTIPGPLLDRMD-AIRLSGYISKEKVDIAKHHLWPRLLKRSGLKSKQLK 555 Query: 203 VTDEAACEIA---MRSRGTPRIAGRLLRRVR 230 ++D A EIA R G + L R VR Sbjct: 556 ISDAAIREIAEGYAREAGVRNLEKHLARIVR 586 >gi|218191547|gb|EEC73974.1| hypothetical protein OsI_08877 [Oryza sativa Indica Group] Length = 612 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107 VLF GPPG GKT+ A+V+A++ GV +I G + +L +L D Sbjct: 383 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANDLPDGG 442 Query: 108 VLFIDEI 114 ++F+DE+ Sbjct: 443 IIFLDEV 449 >gi|223934595|ref|ZP_03626515.1| AAA ATPase central domain protein [bacterium Ellin514] gi|223896550|gb|EEF62991.1| AAA ATPase central domain protein [bacterium Ellin514] Length = 447 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 101/235 (42%), Gaps = 53/235 (22%) Query: 56 HVLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGPVIA--KAGDLAALLTNLEDR---- 106 H +F G PG GKT++A+++A RE G + G ++ +AG + +++ E + Sbjct: 207 HQIFHGNPGTGKTSVARILARIYREFGF---LSKGELVETDRAGLVGSVIGATEAKTEEI 263 Query: 107 ------DVLFIDEIHRLSIIVEE--------ILYPAMEDFQLDLMVGEGPSARSVKINLS 152 VLFIDE + L+ ++ L AMED + +L+V + + Sbjct: 264 IRKSRGSVLFIDEAYSLATDSQQDFGQRAIDTLVKAMEDMRGNLVV----IVAGYRKEME 319 Query: 153 RFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 RF L NP L RF + Y E+L I +R A + DEAA + Sbjct: 320 RF----------LGANPGLASRFNRNLDFPDYSNEELVEIFRRFAAERRFVMEDEAATRV 369 Query: 212 AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266 I+ + RR R +A+ + R + + +L+R A + +DQ R Sbjct: 370 ---------ISALVERRQRLEERFGNARDV-RTLWEISLMRQA--ERIYDQWKAR 412 >gi|149371395|ref|ZP_01890881.1| DNA polymerase III subunit gamma/tau [unidentified eubacterium SCB49] gi|149355533|gb|EDM44092.1| DNA polymerase III subunit gamma/tau [unidentified eubacterium SCB49] Length = 361 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 49/242 (20%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80 RP T ++ GQ S L+ I+ A+AL LF GP G+GKT+ A+++A+++ Sbjct: 12 RPTTFKQVVGQQAITSTLENAIDNNHL-AQAL---LFTGPRGVGKTSCARILAKKINSDG 67 Query: 81 ------NFRSTSGPVIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVEEI 124 +F + A + + + NL D+ V IDE+H LS Sbjct: 68 TEKEDEDFAFNIFELDAASNNSVDDIRNLTDQVRIPPQTGKYKVYIIDEVHMLSSAA--- 124 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 F L E P ++ I ATT + + R I +F Sbjct: 125 -------FNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI---FDFRR 166 Query: 185 I--EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242 I +D+K ++ A + D+A IA ++ G R A + RV F+ K +T Sbjct: 167 ITVQDIKGHLKDVANAENVNAEDDALHIIAQKADGALRDALSIFDRVVSFS----GKNLT 222 Query: 243 RE 244 RE Sbjct: 223 RE 224 >gi|332527227|ref|ZP_08403297.1| putative MoxR like protein [Rubrivivax benzoatilyticus JA2] gi|332111649|gb|EGJ11630.1| putative MoxR like protein [Rubrivivax benzoatilyticus JA2] Length = 312 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 16/124 (12%) Query: 29 EFTGQVEACSNLKVF----IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84 + +G V+ S + V IE + A A H+L PG+GKTTLA +A LG++F Sbjct: 12 QISGLVDQISTIIVGKRPQIEDSVACLLAGGHLLIEDVPGVGKTTLAHALAGSLGLSFSR 71 Query: 85 TSGPVIAKAGDLAALLTNLEDRD------------VLFIDEIHRLSIIVEEILYPAMEDF 132 T DL + RD VL DEI+R + L AME+ Sbjct: 72 TQFTADLMPSDLVGVSVFDRQRDAFVFHPGPVFAQVLLADEINRAGPKTQSALLEAMEEH 131 Query: 133 QLDL 136 Q+ + Sbjct: 132 QVSI 135 >gi|328883303|emb|CCA56542.1| Cell division protein FtsH [Streptomyces venezuelae ATCC 10712] Length = 672 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 180 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 237 >gi|328953494|ref|YP_004370828.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453818|gb|AEB09647.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM 11109] Length = 708 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 7/64 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAK-----AGDLAALLTNLEDRD-VL 109 LF G PG GKT AQV+A +LG++ FR V++K + +L +L+ D D VL Sbjct: 489 ALFTGSPGTGKTMAAQVIAAQLGLDLFRIDLSAVVSKYVGETSHNLQHILSRAADMDVVL 548 Query: 110 FIDE 113 F DE Sbjct: 549 FFDE 552 >gi|327286230|ref|XP_003227834.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial [Anolis carolinensis] Length = 382 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED D+S E G E L+ IE E V L Sbjct: 111 LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 164 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 165 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 224 Query: 111 IDEI 114 +DEI Sbjct: 225 MDEI 228 >gi|330794936|ref|XP_003285532.1| hypothetical protein DICPUDRAFT_46137 [Dictyostelium purpureum] gi|325084535|gb|EGC37961.1| hypothetical protein DICPUDRAFT_46137 [Dictyostelium purpureum] Length = 438 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA-GDLAALLTNL------EDRDV 108 +L GPPG GK+ LA+ VA E+ F S S ++ K GD L+ L + V Sbjct: 165 ILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKKNSV 224 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 225 IFIDEVDSL 233 >gi|312211421|emb|CBX91506.1| similar to AAA family ATPase/60S ribosome export protein Rix7 [Leptosphaeria maculans] Length = 729 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 23/42 (54%) Query: 47 AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 AK A VL GPPG GKT LA+ VA E NF S GP Sbjct: 495 AKVGISAPTGVLLWGPPGCGKTLLAKAVAAESKANFISVKGP 536 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------V 108 VL GPPG GKT + + A ELGV F GP I + +G+ + +R + Sbjct: 192 VLLHGPPGCGKTMICRAFAAELGVPFIEILGPSIVSSMSGESEKQIREHFERAKEVAPCI 251 Query: 109 LFIDEI 114 +FIDEI Sbjct: 252 IFIDEI 257 >gi|311897757|dbj|BAJ30165.1| putative cell division protein FtsH [Kitasatospora setae KM-6054] Length = 669 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 178 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 235 >gi|302876586|ref|YP_003845219.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B] gi|307687261|ref|ZP_07629707.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B] gi|302579443|gb|ADL53455.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B] Length = 647 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78 T ++ G+ E + L+ ++ K + L+ +L VGPPG GKT LA+ VA E Sbjct: 154 TFKDVAGEDEEKAELQEVVDFLKYPKKYLEMGARIPKGMLLVGPPGTGKTLLAKAVAGEA 213 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 214 GVPFFSISG 222 >gi|238855043|ref|ZP_04645371.1| ATP-dependent metallopeptidase HflB [Lactobacillus jensenii 269-3] gi|260664827|ref|ZP_05865678.1| cell division protein [Lactobacillus jensenii SJ-7A-US] gi|282934829|ref|ZP_06340063.1| cell division protease FtsH [Lactobacillus jensenii 208-1] gi|313472619|ref|ZP_07813108.1| cell division protein FtsH [Lactobacillus jensenii 1153] gi|238832287|gb|EEQ24596.1| ATP-dependent metallopeptidase HflB [Lactobacillus jensenii 269-3] gi|260561310|gb|EEX27283.1| cell division protein [Lactobacillus jensenii SJ-7A-US] gi|281301101|gb|EFA93411.1| cell division protease FtsH [Lactobacillus jensenii 208-1] gi|313448962|gb|EEQ68431.2| cell division protein FtsH [Lactobacillus jensenii 1153] Length = 708 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 229 VLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTSPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|298529831|ref|ZP_07017234.1| ATP-dependent metalloprotease FtsH [Desulfonatronospira thiodismutans ASO3-1] gi|298511267|gb|EFI35170.1| ATP-dependent metalloprotease FtsH [Desulfonatronospira thiodismutans ASO3-1] Length = 613 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 23/31 (74%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 V+ VGPPG GKT LA+ VA E GV+F S +G Sbjct: 205 VILVGPPGTGKTLLAKAVAGESGVSFLSITG 235 >gi|238576141|ref|XP_002387929.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553] gi|215448797|gb|EEB88859.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553] Length = 360 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80 RP+T+++ + Q + L+ + + L H+LF GPPG GKT+ +AR+L Sbjct: 18 RPKTIDDVSAQQHTVAVLQKALTSTN-----LPHMLFYGPPGTGKTSTILALARQLFGPD 72 Query: 81 NFRS 84 NFRS Sbjct: 73 NFRS 76 >gi|194759542|ref|XP_001962006.1| GF14649 [Drosophila ananassae] gi|190615703|gb|EDV31227.1| GF14649 [Drosophila ananassae] Length = 992 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 17/27 (62%), Positives = 18/27 (66%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449 >gi|168001607|ref|XP_001753506.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695385|gb|EDQ81729.1| predicted protein [Physcomitrella patens subsp. patens] Length = 688 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 262 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 292 >gi|164655411|ref|XP_001728835.1| hypothetical protein MGL_4002 [Malassezia globosa CBS 7966] gi|159102721|gb|EDP41621.1| hypothetical protein MGL_4002 [Malassezia globosa CBS 7966] Length = 1097 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 41/180 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98 + VGPPG+GKT++ + +AR L F R+ G + KA + A Sbjct: 608 ICLVGPPGVGKTSIGKSIARALDRQFYRFSVGGLSDVAEIKGHRRTYVGAMPGKA--IQA 665 Query: 99 LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 L + ++ IDE+ +L S + E+L P LD + V ++ Sbjct: 666 LKKVGTENPLILIDEVDKLGRGYNGDPSSALLEMLDPEQNSSFLDHYM-------DVPVD 718 Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-----RGAKLTGLAVTD 205 LSR + + + PL DR + I ++ Y E+ + I + + + +GL TD Sbjct: 719 LSRVLFVCTANTLDTIPQPLLDRMEV-IEVSSYTAEEKRHIARDYLAPQAKEASGLKDTD 777 >gi|152990291|ref|YP_001356013.1| ATP-dependent protease ATP-binding subunit ClpX [Nitratiruptor sp. SB155-2] gi|151422152|dbj|BAF69656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitratiruptor sp. SB155-2] Length = 409 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 14/84 (16%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A +VLF+GP G GKT +AQ +A+ L V + +AG D+ +LT L D Sbjct: 106 AKSNVLFIGPTGSGKTLMAQTMAKVLDVPLAIADATSLTEAGYVGEDVENILTRLYHAAD 165 Query: 106 RDV-------LFIDEIHRLSIIVE 122 DV +FIDEI +++ + E Sbjct: 166 EDVKKAEKGIVFIDEIDKIARLSE 189 >gi|150003036|ref|YP_001297780.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides vulgatus ATCC 8482] gi|254883674|ref|ZP_05256384.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 4_3_47FAA] gi|294775660|ref|ZP_06741168.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides vulgatus PC510] gi|319642189|ref|ZP_07996849.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides sp. 3_1_40A] gi|149931460|gb|ABR38158.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides vulgatus ATCC 8482] gi|254836467|gb|EET16776.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 4_3_47FAA] gi|294450504|gb|EFG18996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides vulgatus PC510] gi|317386175|gb|EFV67094.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides sp. 3_1_40A] Length = 416 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 29/127 (22%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD---------HVLFVGPPGL 65 L +P+ ++EF GQ +A L V + R + +D +++ VG G Sbjct: 66 LPKPKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGT 125 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111 GKT LA+ +A+ L V F V+ +AG D+ +LLT L +R ++FI Sbjct: 126 GKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAERGIVFI 185 Query: 112 DEIHRLS 118 DEI +++ Sbjct: 186 DEIDKIA 192 >gi|119512416|ref|ZP_01631499.1| AAA ATPase, central region [Nodularia spumigena CCY9414] gi|119462945|gb|EAW43899.1| AAA ATPase, central region [Nodularia spumigena CCY9414] Length = 611 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD-- 107 E VL VGP G GKT A+ +A ELGVN+ + GP VI K G+ L + ++ Sbjct: 123 EPTHGVLLVGPSGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAK 182 Query: 108 ----VLFIDEIHRLS 118 ++FIDEI L+ Sbjct: 183 NAPCIIFIDEIDSLA 197 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101 + +A A +L GPPG GKT LA+ VA + NF +GP V A + L Sbjct: 385 ETKARAPKGILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRELFA 444 Query: 102 NLEDRD--VLFIDEIHRLS 118 D V+FIDE+ L+ Sbjct: 445 KARQADPCVIFIDELDTLA 463 >gi|119492884|ref|ZP_01623933.1| ATP-dependent Zn protease [Lyngbya sp. PCC 8106] gi|119452912|gb|EAW34085.1| ATP-dependent Zn protease [Lyngbya sp. PCC 8106] Length = 618 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225 >gi|49258183|gb|AAH73644.1| Psmc6 protein [Xenopus laevis] Length = 392 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED D+S E G E L+ IE E V L Sbjct: 121 LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 174 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 175 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 234 Query: 111 IDEI 114 +DEI Sbjct: 235 MDEI 238 >gi|321454581|gb|EFX65746.1| hypothetical protein DAPPUDRAFT_303531 [Daphnia pulex] Length = 343 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81 RP T E G +A L+VF AR +++ GPPG+GKTT +AR LG N Sbjct: 30 RPTTFGEIVGNEDAVGRLEVF-----AREGNTPNIIIAGPPGVGKTTTILCLARTLLGPN 84 Query: 82 FR 83 ++ Sbjct: 85 YK 86 >gi|224051966|ref|XP_002200452.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Taeniopygia guttata] Length = 360 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED D+S E G E L+ IE E V L Sbjct: 89 LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 142 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 143 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 202 Query: 111 IDEI 114 +DEI Sbjct: 203 MDEI 206 >gi|219851054|ref|YP_002465486.1| ATPase associated with various cellular activities AAA_3 [Methanosphaerula palustris E1-9c] gi|219545313|gb|ACL15763.1| ATPase associated with various cellular activities AAA_3 [Methanosphaerula palustris E1-9c] Length = 324 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 12/90 (13%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDR-------- 106 HVL G PG KTT++++VAR +G F G V + D+ + + + E Sbjct: 47 HVLIDGVPGTAKTTISKIVARLIGYQFSRVQGAVDVQPTDIVGIRIYDNETHKFSLQKGP 106 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + + IDEI+RL+ + AM + Q Sbjct: 107 IFANFVMIDEINRLTPKTQSAFIEAMAEHQ 136 >gi|194884696|ref|XP_001976314.1| GG20087 [Drosophila erecta] gi|190659501|gb|EDV56714.1| GG20087 [Drosophila erecta] Length = 737 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA LK +E K+ + + VL VGPPG GKT LA+ VA E Sbjct: 299 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 358 Query: 79 GVNFRSTSGP 88 V F +GP Sbjct: 359 KVPFFHAAGP 368 >gi|153009535|ref|YP_001370750.1| ATP-dependent protease ATP-binding subunit ClpX [Ochrobactrum anthropi ATCC 49188] gi|166214795|sp|A6X117|CLPX_OCHA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|151561423|gb|ABS14921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum anthropi ATCC 49188] Length = 424 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|56202307|dbj|BAD73766.1| katanin-like [Oryza sativa Japonica Group] gi|56784878|dbj|BAD82149.1| katanin-like [Oryza sativa Japonica Group] Length = 305 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 57 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARFYAPST 116 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 117 IFIDEIDSL 125 >gi|34556512|ref|NP_906327.1| ATP-dependent protease ATP-binding subunit ClpX [Wolinella succinogenes DSM 1740] gi|46576390|sp|Q7MAS4|CLPX1_WOLSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 1 gi|34482226|emb|CAE09227.1| CLP PROTEASE [Wolinella succinogenes] Length = 417 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 14/81 (17%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT +AQ +AR L V + +AG D+ +LT L Sbjct: 113 NILLIGPTGSGKTLMAQTLARFLNVPIAICDATSLTEAGYVGEDVENILTRLLQAAEGDV 172 Query: 104 --EDRDVLFIDEIHRLSIIVE 122 +R ++FIDEI ++S + E Sbjct: 173 KKAERGIVFIDEIDKISRLSE 193 >gi|93004934|ref|YP_579371.1| recombination factor protein RarA [Psychrobacter cryohalolentis K5] gi|92392612|gb|ABE73887.1| Recombination protein MgsA [Psychrobacter cryohalolentis K5] Length = 429 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 105/265 (39%), Gaps = 53/265 (20%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+ GQ + + L+ +E L ++ G G+GKTT+A ++A + Sbjct: 15 MRPTTLDAIIGQEHLLAVGAPLRRLVEQGH-----LPSIILHGEAGIGKTTIAMLLADAV 69 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 F + S A + L L+ +D V+FIDEIHR + ++ L A+E Sbjct: 70 ERPFHALS----ALNTGVKQLREVLDSKDSLSFESPVVFIDEIHRFNKAQQDALLGAVES 125 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLK 189 TLI ATT + N L R + RL E + Sbjct: 126 --------------------GDITLIGATTENPSFSVNNALLSRCQV-YRLKPLTPEQIS 164 Query: 190 TIVQRG----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-----KT 240 ++QR L L+V +A I+ + G R A LL A+ + T Sbjct: 165 AVLQRALLEDNILKNLSVDLQAQDTISQLAHGDARKALNLLELAIQTADTKQSPIILDDT 224 Query: 241 ITREIADAALLRLAIDKMGFDQLDL 265 + IA AL+R DK G D+ Sbjct: 225 LVARIAQTALVRY--DKDGEQHYDM 247 >gi|330964513|gb|EGH64773.1| ATP-dependent protease La [Pseudomonas syringae pv. actinidiae str. M302091] Length = 805 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLAKAGVAK 554 Query: 199 TGLAVTD---EAACEIAMRSRGTPRIAGRLLRRVR 230 + L+++D A E R G + +L + VR Sbjct: 555 SKLSISDTALRAVIEGYAREAGVRHLEKQLGKLVR 589 >gi|319404100|emb|CBI77690.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella rochalimae ATCC BAA-1498] Length = 398 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 86 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 145 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 146 YNVERAQRGIVYIDEVDKIS 165 >gi|296421944|ref|XP_002840523.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636741|emb|CAZ84714.1| unnamed protein product [Tuber melanosporum] Length = 387 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL + +G + + + F++ + L H+LF GPPG GKT+ +AR + Sbjct: 50 RPDTLNDVSGHEDILTTINKFVQTNR-----LPHLLFYGPPGTGKTSTILALARHI 100 >gi|284931036|gb|ADC30974.1| cell division protease ftsH-like protein [Mycoplasma gallisepticum str. F] Length = 765 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 20/151 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 V+ GPPG GKT LA+ VA E GV F +G G A + NL + + Sbjct: 310 VVLYGPPGTGKTLLAKAVAGEAGVPFFQVTGSAFEDMLVGVGAKRVRNLFAKAKKAAPCI 369 Query: 109 LFIDEIHRLSII--VEEILYPAMEDFQLDLMVGE--GPSARSVKINLSRFTLIAATTRVG 164 +FIDEI + EI + D L+ ++ E G S R+ I ++AAT R+ Sbjct: 370 IFIDEIDSVGSKRGKYEISAGSATDQTLNQLLAEMDGFSTRTGII------VMAATNRLD 423 Query: 165 LLTNPL--QDRFGIPIRLNFYEIEDLKTIVQ 193 +L + L RF I++N +I++ + I++ Sbjct: 424 VLDDALLRPGRFDRHIQVNLPDIKEREAILK 454 >gi|239831861|ref|ZP_04680190.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum intermedium LMG 3301] gi|239824128|gb|EEQ95696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum intermedium LMG 3301] Length = 424 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|237725285|ref|ZP_04555766.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D4] gi|229436551|gb|EEO46628.1| ATP-dependent protease ATP-binding subunit [Bacteroides dorei 5_1_36/D4] Length = 416 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 29/127 (22%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD---------HVLFVGPPGL 65 L +P+ ++EF GQ +A L V + R + +D +++ VG G Sbjct: 66 LPKPKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGT 125 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111 GKT LA+ +A+ L V F V+ +AG D+ +LLT L +R ++FI Sbjct: 126 GKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAERGIVFI 185 Query: 112 DEIHRLS 118 DEI +++ Sbjct: 186 DEIDKIA 192 >gi|255280597|ref|ZP_05345152.1| cell division protein FtsH [Bryantella formatexigens DSM 14469] gi|255269062|gb|EET62267.1| cell division protein FtsH [Bryantella formatexigens DSM 14469] Length = 609 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 19/118 (16%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 EG+ +V+ ED E T V+ N + + E + + L L VGPPG Sbjct: 160 EGIHFSDVAGED--------EAKESLTEIVDYLHNPQKYTEVGASMPKGL---LLVGPPG 208 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 GKT LA+ VA E V F S SG + A + L +++ ++FIDEI Sbjct: 209 TGKTMLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 266 >gi|182420046|ref|ZP_02951280.1| putative Cell division protease FtsH [Clostridium butyricum 5521] gi|237669537|ref|ZP_04529517.1| cell division protease FtsH [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376083|gb|EDT73670.1| putative Cell division protease FtsH [Clostridium butyricum 5521] gi|237654981|gb|EEP52541.1| cell division protease FtsH [Clostridium butyricum E4 str. BoNT E BL5262] Length = 601 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ +A E GV F S SG Sbjct: 195 ILLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225 >gi|167855228|ref|ZP_02477998.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis 29755] gi|219872048|ref|YP_002476423.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus parasuis SH0165] gi|167853681|gb|EDS24925.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis 29755] gi|219692252|gb|ACL33475.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis SH0165] Length = 416 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 119 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDK 178 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 179 DQAERGIIFIDEIDKIT 195 >gi|37522147|ref|NP_925524.1| cell division protein [Gloeobacter violaceus PCC 7421] gi|35213147|dbj|BAC90519.1| cell division protein [Gloeobacter violaceus PCC 7421] Length = 630 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240 >gi|67926179|ref|ZP_00519407.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular [Crocosphaera watsonii WH 8501] gi|67851976|gb|EAM47507.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular [Crocosphaera watsonii WH 8501] Length = 354 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228 >gi|322389613|ref|ZP_08063161.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus parasanguinis ATCC 903] gi|321143612|gb|EFX39042.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus parasanguinis ATCC 903] Length = 410 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|303248989|ref|ZP_07335235.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio fructosovorans JJ] gi|302489638|gb|EFL49576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio fructosovorans JJ] Length = 417 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 31/145 (21%) Query: 5 EGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKARAEAL----- 54 E + +VS+E LL P R L+E+ GQ +A L V + R Sbjct: 45 EIIAQESVSEETEGGKLLPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGAAAA 104 Query: 55 -------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAAL 99 ++L +GP G GKT LAQ +AR L V F + +AG L L Sbjct: 105 DDVEIDKSNILLIGPTGSGKTLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILVQL 164 Query: 100 LTNLE------DRDVLFIDEIHRLS 118 L N + R +++IDEI +++ Sbjct: 165 LQNADYDIEAASRGIIYIDEIDKIA 189 >gi|239609886|gb|EEQ86873.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis ER-3] Length = 751 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N ++ A+ A VL GPPG GKT LA+ VA Sbjct: 490 ADIGALGGIRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 546 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 547 ESRANFISVKGP 558 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT +A A ELGV F + S P I +G+ L D + Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCL 273 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 274 IFIDEIDAIT 283 >gi|261198899|ref|XP_002625851.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081] gi|239595003|gb|EEQ77584.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081] Length = 751 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N ++ A+ A VL GPPG GKT LA+ VA Sbjct: 490 ADIGALGGIRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 546 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 547 ESRANFISVKGP 558 Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT +A A ELGV F + S P I +G+ L D + Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCL 273 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 274 IFIDEIDAIT 283 >gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis] gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis] Length = 1157 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 247 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 277 >gi|239813169|ref|YP_002942079.1| ATPase AAA [Variovorax paradoxus S110] gi|239799746|gb|ACS16813.1| AAA ATPase central domain protein [Variovorax paradoxus S110] Length = 775 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 31/57 (54%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 T +F+ E L + AA AR E +VL GPPG GKT LA+VVA+ G+ Sbjct: 283 TTHDFSFVEEDAQMLVTLLRAAVARKEPGVNVLLYGPPGTGKTELAKVVAQAAGLEL 339 >gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni] gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni] Length = 331 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP LE+ E S + FI + L H+LF GPPG GKT+ AR+L Sbjct: 17 RPNNLEDLISHEEIVSTINRFIGQKQ-----LPHLLFYGPPGTGKTSTILACARQL 67 >gi|168040828|ref|XP_001772895.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675806|gb|EDQ62297.1| predicted protein [Physcomitrella patens subsp. patens] Length = 696 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 270 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 300 >gi|146417537|ref|XP_001484737.1| hypothetical protein PGUG_02466 [Meyerozyma guilliermondii ATCC 6260] Length = 819 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKTT+A +A EL V F + S P + +G+ L + D + Sbjct: 224 VLLYGPPGCGKTTIANALAGELKVPFLNISAPSVVSGMSGESEKKLREIFDEAKSLAPCL 283 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 284 VFIDEIDAIT 293 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 546 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 577 >gi|11467752|ref|NP_050804.1| cell division protein [Guillardia theta] gi|6016057|sp|O78516|FTSH_GUITH RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|3603077|gb|AAC35738.1| hypothetical chloroplast RF25 [Guillardia theta] Length = 631 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ +A E GV F S SG V A + L ++ + Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 VFIDEI 274 >gi|254495433|ref|ZP_05108357.1| AAA-metalloprotease FtsH, with ATPase domain [Polaribacter sp. MED152] gi|85819788|gb|EAQ40945.1| AAA-metalloprotease FtsH, with ATPase domain [Polaribacter sp. MED152] Length = 657 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVL 109 L VGPPG GKT LA+ VA E GV F S SG V A + L + + ++ Sbjct: 232 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEMFVGVGASRVRDLFKQAQQKSPSII 291 Query: 110 FIDEI 114 FIDEI Sbjct: 292 FIDEI 296 >gi|325282854|ref|YP_004255395.1| ATPase associated with various cellular activities AAA_3 [Deinococcus proteolyticus MRP] gi|324314663|gb|ADY25778.1| ATPase associated with various cellular activities AAA_3 [Deinococcus proteolyticus MRP] Length = 318 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 24/159 (15%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106 H+L PG+GKTTLA +AR LG++F R + A L + + E R Sbjct: 51 HLLIEDQPGVGKTTLAGALARTLGLDFGRVQFTADLLPADLLGVSIWDSETRSFHFHAGP 110 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 VL DEI+R + + L AME+ Q V EG +R + F +IA Sbjct: 111 VFTSVLLADEINRATPKTQGALLEAMEERQ----VSEGGVSRPLP---DPFFVIATQNPA 163 Query: 164 GLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAK 197 + T+PL DRF + + L + + + +++ G + Sbjct: 164 AFVGTSPLPEAQLDRFLLTVTLGYPDARAERELLETGGR 202 >gi|317488913|ref|ZP_07947443.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. 1_3_56FAA] gi|316911987|gb|EFV33566.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. 1_3_56FAA] Length = 725 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 L VGPPG GKT LA+ VA E GV F S SG V A + L +D + Sbjct: 228 CLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFQQAKDASPAI 287 Query: 109 LFIDEI 114 +FIDEI Sbjct: 288 IFIDEI 293 >gi|303388295|ref|XP_003072382.1| DNA replication factor C small subunit [Encephalitozoon intestinalis ATCC 50506] gi|303301522|gb|ADM11022.1| DNA replication factor C small subunit [Encephalitozoon intestinalis ATCC 50506] Length = 305 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 32/206 (15%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE----- 77 RP +L++ G E + LK K + ++LF GPPG GKTT + +A Sbjct: 10 RPESLQQVVGNREIVAALKSISSTNK-----IPNMLFYGPPGTGKTTSIRAIANNLPRSC 64 Query: 78 -LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 L +N G + T + ++ +DE +S + L +EDF + Sbjct: 65 VLELNASDERGIATVRETIKEFASTYSKTTKLVILDEADMMSRDAQNALRRIIEDFSAN- 123 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196 +RF LIA +R + P+ R + F IED ++ ++ Sbjct: 124 ---------------ARFCLIANHSRK--IIPPILSRC---TKFRFGPIEDTESRIKEIC 163 Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIA 222 K + ++E IA S G R A Sbjct: 164 KKENIKYSEEGIKGIAEISEGDMRKA 189 >gi|302535218|ref|ZP_07287560.1| cell division protein FtsH [Streptomyces sp. C] gi|302444113|gb|EFL15929.1| cell division protein FtsH [Streptomyces sp. C] Length = 677 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 182 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239 >gi|297587579|ref|ZP_06946223.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516] gi|297574268|gb|EFH92988.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516] Length = 628 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LAQ VA E V F S SG Sbjct: 199 VLLVGPPGTGKTLLAQAVAGEAKVPFFSMSG 229 >gi|171463606|ref|YP_001797719.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226706593|sp|B1XUS8|CLPX_POLNS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|171193144|gb|ACB44105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 453 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD------------LAALL 100 A ++L +GP G GKT LAQ +AR L V F + +AG L A Sbjct: 140 AKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQACD 199 Query: 101 TNLE--DRDVLFIDEIHRLS 118 N+E R +++IDEI ++S Sbjct: 200 YNVEKAQRGIVYIDEIDKIS 219 >gi|157736713|ref|YP_001489396.1| cell division protein FtsH [Arcobacter butzleri RM4018] gi|157698567|gb|ABV66727.1| cell division protein FtsH [Arcobacter butzleri RM4018] Length = 661 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E V F S SG Sbjct: 230 VLLVGPPGTGKTLLAKAVAGEANVEFLSVSG 260 >gi|20151923|gb|AAM11321.1| SD07712p [Drosophila melanogaster] Length = 874 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 17/26 (65%), Positives = 18/26 (69%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 305 LLCGPPGLGKTTLAHTIARHAGYNVR 330 >gi|21221831|ref|NP_627610.1| cell division protein ftsH-like protein [Streptomyces coelicolor A3(2)] gi|256786989|ref|ZP_05525420.1| cell division protein ftsH-like protein [Streptomyces lividans TK24] gi|289770882|ref|ZP_06530260.1| cell division protein FtsH [Streptomyces lividans TK24] gi|4808343|emb|CAB42757.1| cell division protein ftsH homolog [Streptomyces coelicolor A3(2)] gi|289701081|gb|EFD68510.1| cell division protein FtsH [Streptomyces lividans TK24] Length = 668 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226 >gi|322800189|gb|EFZ21274.1| hypothetical protein SINV_12219 [Solenopsis invicta] Length = 154 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 22/35 (62%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 A+ VL GPPG GKT A+ +A E G+NF S G Sbjct: 104 AVSGVLLYGPPGCGKTMAAKAIANEAGINFISIKG 138 >gi|322391568|ref|ZP_08065037.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus peroris ATCC 700780] gi|321145651|gb|EFX41043.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus peroris ATCC 700780] Length = 410 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|315635885|ref|ZP_07891147.1| cell division protein FtsH [Arcobacter butzleri JV22] gi|315479864|gb|EFU70535.1| cell division protein FtsH [Arcobacter butzleri JV22] Length = 662 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E V F S SG Sbjct: 230 VLLVGPPGTGKTLLAKAVAGEANVEFLSVSG 260 >gi|302846326|ref|XP_002954700.1| hypothetical protein VOLCADRAFT_64976 [Volvox carteri f. nagariensis] gi|300260119|gb|EFJ44341.1| hypothetical protein VOLCADRAFT_64976 [Volvox carteri f. nagariensis] Length = 594 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 41/154 (26%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL----LTNL 103 KA H+LF GPPG G+T +A+ +AR G+++ SG GD+A L +T L Sbjct: 326 KAHGAPFRHMLFYGPPGTGETMVAKRMARTSGLDYAIMSG------GDVAPLEGRAVTQL 379 Query: 104 EDRD----------VLFIDE----IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149 +LFIDE + R S + E L ++ L+ G +R Sbjct: 380 HQTFDWAEKSRRGLLLFIDEADAFLGRRSDSMSEGLRGSLN----ALLFRTGDQSRD--- 432 Query: 150 NLSRFTLIAATTRVGLLTNPLQDR------FGIP 177 F ++ AT R G L + + DR FG+P Sbjct: 433 ----FMVVLATNRPGDLDDAVLDRMDEALEFGLP 462 >gi|302818219|ref|XP_002990783.1| hypothetical protein SELMODRAFT_185567 [Selaginella moellendorffii] gi|300141344|gb|EFJ08056.1| hypothetical protein SELMODRAFT_185567 [Selaginella moellendorffii] Length = 691 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 264 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 294 >gi|300790552|ref|YP_003770843.1| cell division protease FtsH [Amycolatopsis mediterranei U32] gi|299800066|gb|ADJ50441.1| cell division protease FtsH [Amycolatopsis mediterranei U32] Length = 799 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ AR +AL VL GPPG GKT LA+ VA E GV F + SG Sbjct: 180 VEELYEIKDFLQNP-ARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISG 237 >gi|297613356|ref|NP_001067045.2| Os12g0565100 [Oryza sativa Japonica Group] gi|255670397|dbj|BAF30064.2| Os12g0565100 [Oryza sativa Japonica Group] Length = 832 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 20/196 (10%) Query: 40 LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99 +K+ E A ++ L + VGP GLGKTTLA V R+L F+ + +++ D+ + Sbjct: 308 IKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKI 367 Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD----LMVGEGPSARSVK-INLSRF 154 + N+ + + E + I EE L A +F + +++ + S ++ K I + F Sbjct: 368 VRNIYCQ--VSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALF 425 Query: 155 -----TLIAATTR----VGLLTNPLQDR-FGI-PIRLNFYEIEDLKTIVQRGAKLTGLAV 203 + I TTR P DR F I P+ ++ + LK I G+K + Sbjct: 426 VNNCGSRIMTTTRNMAIAKSCCTPDHDRVFEIMPLSIDNSKSLFLKRIF--GSKDVCIPQ 483 Query: 204 TDEAACEIAMRSRGTP 219 DE EI + G+P Sbjct: 484 LDEVCYEILKKCGGSP 499 >gi|289577298|ref|YP_003475925.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter italicus Ab9] gi|289527011|gb|ADD01363.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter italicus Ab9] Length = 515 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 40/263 (15%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81 RP++ +E GQ LK + + + H LF G G GKT++A++ A+ VN Sbjct: 10 RPKSFKEVVGQEHIVKTLK-----NQIKLNRIGHAYLFTGTRGTGKTSIAKIFAK--AVN 62 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDFQLD 135 + + + D+ + N DVL ID S+ + E ++Y P+ +++ Sbjct: 63 CLNNAEGEPCNSCDICHAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQTKYKVY 122 Query: 136 L-----MVGEGPSA---RSVKINLSRFTLIAATTRVGLLTNPLQDRFG------IPIRLN 181 + M+ G ++++ S I ATT L + + R IP RL Sbjct: 123 IIDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL- 181 Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 + + R +G+ + D+ IA+ G+ R A LL + + E I Sbjct: 182 ------IAQNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLEQCISYKE----GFI 231 Query: 242 TREIADAALLRLAIDKMGFDQLD 264 T E +L +A D+M F LD Sbjct: 232 TYEDV-CEMLGVANDEMLFSLLD 253 >gi|240102067|ref|YP_002958375.1| moxR-type AAA ATPase, putative chaperone protein (moxR) [Thermococcus gammatolerans EJ3] gi|239909620|gb|ACS32511.1| moxR-type AAA ATPase, putative chaperone protein (moxR) [Thermococcus gammatolerans EJ3] Length = 309 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 45/199 (22%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLED--------- 105 H+L G PGL KTTL++ A+ L + F R P + A + ++ Sbjct: 36 HILLEGVPGLAKTTLSKNFAKSLNLAFTRVQMTPDLLPADIIGHSFYDMRTGEFKIRKGP 95 Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 ++L +DEI+R S + L AME+ Q+ + EG + R L R L+ AT Sbjct: 96 IFTNILLVDEINRASPKTQSALLEAMEEKQVTI---EGQTFR-----LPRPFLVIAT--- 144 Query: 164 GLLTNPLQ------------DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 NP++ DRF + I++++ K +++R L + DEA + Sbjct: 145 ---RNPVEIEGVYDIPTAQADRFMMEIKVSYLSENHEKEMLRR----KNLGLFDEAKPVV 197 Query: 212 AMRSRGTPRIAGRLLRRVR 230 S+G A + +R V+ Sbjct: 198 ---SKGELEKAAKEVRGVK 213 >gi|238026975|ref|YP_002911206.1| ATP-dependent protease La [Burkholderia glumae BGR1] gi|237876169|gb|ACR28502.1| ATP-dependent protease La [Burkholderia glumae BGR1] Length = 805 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 104/253 (41%), Gaps = 50/253 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+L Q +AR F R G V +A G + LT Sbjct: 354 LCLVGPPGVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLT 413 Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + R+ LF +DE+ ++ S + E+L P D V V +LS Sbjct: 414 KVGVRNPLFLLDEVDKMGMDFRGDPSSALLEVLDPEQNHTFADHYV-------EVDFDLS 466 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----GAKLTGLAVTDEA 207 +A + + + PL DR + IRL+ Y ++ +I QR K GL + A Sbjct: 467 DVMFVATSNSLN-IPPPLLDRMEV-IRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEIA 524 Query: 208 ACEIAMRS--RGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264 E A+R R R AG R L R I R++ LL+ A + D + Sbjct: 525 VSEEAIRDIIRYYTREAGVRSLER--------EVSKICRKVVKMLLLKKAASPVKVDAGN 576 Query: 265 L-RYLTMIARNFG 276 L +L + +FG Sbjct: 577 LDTFLGVRKYDFG 589 >gi|225026759|ref|ZP_03715951.1| hypothetical protein EUBHAL_01011 [Eubacterium hallii DSM 3353] gi|224955878|gb|EEG37087.1| hypothetical protein EUBHAL_01011 [Eubacterium hallii DSM 3353] Length = 604 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 202 VLLVGPPGTGKTMLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 261 Query: 109 LFIDEI 114 +FIDEI Sbjct: 262 VFIDEI 267 >gi|224111036|ref|XP_002332995.1| predicted protein [Populus trichocarpa] gi|222834384|gb|EEE72861.1| predicted protein [Populus trichocarpa] Length = 472 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 46 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 76 >gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus corporis] gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus corporis] Length = 360 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+T+++ QVE S L+ ++ A L ++LF GPPG GKT+ AR+L Sbjct: 42 RPKTVDDIVEQVEVVSVLRQTLKGAD-----LPNLLFYGPPGTGKTSTILAAARQL 92 >gi|196006672|ref|XP_002113202.1| hypothetical protein TRIADDRAFT_11565 [Trichoplax adhaerens] gi|190583606|gb|EDV23676.1| hypothetical protein TRIADDRAFT_11565 [Trichoplax adhaerens] Length = 526 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT +A+ +A E G+NF + GP Sbjct: 337 LLLAGPPGCGKTLIAKAIANESGLNFIAVKGP 368 >gi|196011678|ref|XP_002115702.1| conserved hypothetical protein [Trichoplax adhaerens] gi|190581478|gb|EDV21554.1| conserved hypothetical protein [Trichoplax adhaerens] Length = 456 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ +A + +E K+R A VL GPPG GKT LA VA ELG Sbjct: 39 LVGQEKAREAAGIIVELIKSRKMAGRAVLLAGPPGTGKTALALAVAHELG 88 >gi|190346315|gb|EDK38368.2| hypothetical protein PGUG_02466 [Meyerozyma guilliermondii ATCC 6260] Length = 819 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKTT+A +A EL V F + S P + +G+ L + D + Sbjct: 224 VLLYGPPGCGKTTIANALAGELKVPFLNISAPSVVSGMSGESEKKLREIFDEAKSLAPCL 283 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 284 VFIDEIDAIT 293 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 546 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 577 >gi|88602110|ref|YP_502288.1| AAA family ATPase, CDC48 subfamily protein [Methanospirillum hungatei JF-1] gi|88187572|gb|ABD40569.1| AAA family ATPase, CDC48 subfamily [Methanospirillum hungatei JF-1] Length = 801 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 29/123 (23%) Query: 6 GLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 G LSR +S +E +I L PR E ++ I++ K VL GPP Sbjct: 185 GGLSREISLIREMVEIPLRYPRIFE------------RLGIDSPKG-------VLLYGPP 225 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIH 115 G GKT LA+ VA E+ +F SGP + GD + + + ++FIDEI Sbjct: 226 GTGKTLLARAVASEVDAHFIPLSGPEVMSRYYGDSEKKIREIFEEARQKAPSIIFIDEID 285 Query: 116 RLS 118 ++ Sbjct: 286 SIA 288 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA + +NF S GP Sbjct: 491 ILLFGPPGTGKTLLAKAVAAKSRMNFISVKGP 522 >gi|88658550|ref|YP_507694.1| ATP-dependent protease ATP-binding subunit [Ehrlichia chaffeensis str. Arkansas] gi|123492907|sp|Q2GFT9|CLPX_EHRCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|88600007|gb|ABD45476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ehrlichia chaffeensis str. Arkansas] Length = 406 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 18/95 (18%) Query: 38 SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG--- 94 SNL V E +++ +VL +GP G GKT LA+ +AR L V F + +AG Sbjct: 94 SNLSVISEVEISKS----NVLLIGPTGSGKTLLARTLARVLQVPFAMADATTLTEAGYVG 149 Query: 95 -DLAALLTNL----------EDRDVLFIDEIHRLS 118 D+ +L L R +++IDE+ ++S Sbjct: 150 EDVENILLKLLQAANFNVDAAQRGIIYIDEVDKIS 184 >gi|55820660|ref|YP_139102.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus thermophilus LMG 18311] gi|55822551|ref|YP_140992.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus thermophilus CNRZ1066] gi|81820326|sp|Q5M0S4|CLPX_STRT1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|81820490|sp|Q5M5B0|CLPX_STRT2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|55736645|gb|AAV60287.1| ATP-dependent Clp protease subunit X [Streptococcus thermophilus LMG 18311] gi|55738536|gb|AAV62177.1| ATP-dependent Clp protease subunit X [Streptococcus thermophilus CNRZ1066] gi|312277987|gb|ADQ62644.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus thermophilus ND03] Length = 408 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 112 NILMIGPTGSGKTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 171 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 172 ERAERGIIYVDEIDKIA 188 >gi|103488220|ref|YP_617781.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingopyxis alaskensis RB2256] gi|123379515|sp|Q1GPH4|CLPX_SPHAL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|98978297|gb|ABF54448.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingopyxis alaskensis RB2256] Length = 423 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 111 AKSNILLVGPTGSGKTLLAQTLARFLDVPFTMADATTLTEAGYVGEDVENIILKLLQSSD 170 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 171 YNVEKAQRGIVYIDEIDKIS 190 >gi|323144628|ref|ZP_08079216.1| endopeptidase La [Succinatimonas hippei YIT 12066] gi|322415637|gb|EFY06383.1| endopeptidase La [Succinatimonas hippei YIT 12066] Length = 859 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 32/151 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAKA--------------GDLAALLT 101 +LFVGPPG+GKT++ + +A+ L FR + G V ++ G + L Sbjct: 399 MLFVGPPGVGKTSIGKSIAKALNRPFFRLSLGGVDDESVIKGHRKTYIGSMPGKMVQALR 458 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + + V+ +DEI +L S + E L P + LD + E K++LS Sbjct: 459 ETKVMNPVIMLDEIDKLGRSYQGDPSAALLETLDPEQNNNFLDHYLDE-------KLDLS 511 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 I V + PL DR PIRL+ Y Sbjct: 512 NCLFICTANTVESIPEPLLDRMD-PIRLSGY 541 >gi|322385235|ref|ZP_08058882.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus cristatus ATCC 51100] gi|321270859|gb|EFX53772.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus cristatus ATCC 51100] Length = 409 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 113 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 172 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 173 ERAERGIIYVDEIDKIA 189 >gi|319898777|ref|YP_004158870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella clarridgeiae 73] gi|319402741|emb|CBI76288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella clarridgeiae 73] Length = 398 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 86 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 145 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 146 YNVERAQRGIVYIDEVDKIS 165 >gi|303234817|ref|ZP_07321442.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4] gi|302493935|gb|EFL53716.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4] Length = 628 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LAQ VA E V F S SG Sbjct: 199 VLLVGPPGTGKTLLAQAVAGEAKVPFFSMSG 229 >gi|296876431|ref|ZP_06900483.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus parasanguinis ATCC 15912] gi|312866721|ref|ZP_07726935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus parasanguinis F0405] gi|296432721|gb|EFH18516.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus parasanguinis ATCC 15912] gi|311097802|gb|EFQ56032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus parasanguinis F0405] Length = 410 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|282899237|ref|ZP_06307210.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] gi|281195873|gb|EFA70797.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] Length = 645 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240 >gi|254719173|ref|ZP_05180984.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella sp. 83/13] gi|265984169|ref|ZP_06096904.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp. 83/13] gi|306838165|ref|ZP_07471021.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp. NF 2653] gi|264662761|gb|EEZ33022.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp. 83/13] gi|306406755|gb|EFM62978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp. NF 2653] Length = 424 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|257792624|ref|YP_003183230.1| ATP-dependent metalloprotease FtsH [Eggerthella lenta DSM 2243] gi|257476521|gb|ACV56841.1| ATP-dependent metalloprotease FtsH [Eggerthella lenta DSM 2243] Length = 750 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 L VGPPG GKT LA+ VA E GV F S SG V A + L +D + Sbjct: 253 CLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFQQAKDASPAI 312 Query: 109 LFIDEI 114 +FIDEI Sbjct: 313 IFIDEI 318 >gi|213966172|ref|ZP_03394358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium amycolatum SK46] gi|213951187|gb|EEB62583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium amycolatum SK46] Length = 443 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR+L V F + +AG + + N+ Sbjct: 138 NILLLGPTGCGKTYLAQTLARKLDVPFAIADATSLTEAGYVGEDVENILLKLLQATDFDV 197 Query: 104 --EDRDVLFIDEIHRLS 118 R ++++DEI ++S Sbjct: 198 EKAQRGIIYVDEIDKIS 214 >gi|125717923|ref|YP_001035056.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus sanguinis SK36] gi|323351645|ref|ZP_08087299.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis VMC66] gi|166215215|sp|A3CMV1|CLPX_STRSV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|125497840|gb|ABN44506.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative [Streptococcus sanguinis SK36] gi|322122131|gb|EFX93857.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis VMC66] gi|324991227|gb|EGC23161.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK353] gi|324992983|gb|EGC24903.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK405] gi|324995708|gb|EGC27620.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK678] gi|325687395|gb|EGD29416.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK72] gi|325689773|gb|EGD31777.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK115] gi|325694581|gb|EGD36490.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK150] gi|325696427|gb|EGD38317.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK160] gi|327462279|gb|EGF08606.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK1] gi|327470116|gb|EGF15580.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK330] gi|327489632|gb|EGF21424.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK1058] gi|328946144|gb|EGG40289.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK1087] gi|332361329|gb|EGJ39133.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK1056] Length = 409 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 113 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 172 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 173 ERAERGIIYVDEIDKIA 189 >gi|152995750|ref|YP_001340585.1| ATP-dependent protease ATP-binding subunit ClpX [Marinomonas sp. MWYL1] gi|226706592|sp|A6VW21|CLPX_MARMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|150836674|gb|ABR70650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas sp. MWYL1] Length = 426 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N + Sbjct: 119 NILLIGPTGSGKTLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLQNCDYDV 178 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 179 EKAQRGIVYIDEIDKIS 195 >gi|63086953|emb|CAI72282.1| Lon protease, putative [Phytophthora infestans] Length = 930 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 33/197 (16%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 ++E+ D++ + E+ G + + FI +K + + ++ FVGPPG+GKT++ Sbjct: 416 TEENFDLAKAKQILDEDHYGLKDIKERILEFIAVSKLKGDVQGKIICFVGPPGVGKTSIG 475 Query: 72 QVVARELGVNFRSTS---------------GPVIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L F S V A G + L + + + ++ IDEI Sbjct: 476 KSIARSLNREFYRFSVGGLSDVAEIKGHRRTYVGAMPGKIIQCLKSTQSSNPLILIDEID 535 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 +L + + E+L P+ +D + V ++LSR I + Sbjct: 536 KLGRGYQGDPASALLELLDPSQNSGFVDHYM-------DVPVDLSRVLFICTANVTDTIP 588 Query: 168 NPLQDRFGIPIRLNFYE 184 PL DR + +RL+ Y+ Sbjct: 589 GPLLDRMEV-LRLSGYD 604 >gi|76818320|ref|YP_335233.1| FtsH-2 protease [Burkholderia pseudomallei 1710b] gi|76582793|gb|ABA52267.1| FtsH-2 protease [Burkholderia pseudomallei 1710b] Length = 917 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 457 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 516 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 517 IFIDELDALGKV 528 >gi|77460800|ref|YP_350307.1| PIM1 peptidase [Pseudomonas fluorescens Pf0-1] gi|77384803|gb|ABA76316.1| ATP dependent PIM1 peptidase. Serine peptidase. MEROPS family S16 [Pseudomonas fluorescens Pf0-1] Length = 807 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 389 VLLVGPPGVGKTSVGKSIAESLGRPFYRFSLGGMRDEAEIKGHRRTYIGAQPGKLVQALK 448 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 449 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 497 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++LS+ + + + PL DR + IRL+ Y E+ I +R Sbjct: 498 MDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKVAIAKR 542 >gi|83311890|ref|YP_422154.1| ATP-dependent protease ATP-binding subunit ClpX [Magnetospirillum magneticum AMB-1] gi|123541533|sp|Q2W3I0|CLPX_MAGSA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|82946731|dbj|BAE51595.1| ATP-dependent protease Clp [Magnetospirillum magneticum AMB-1] Length = 421 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAE 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189 >gi|38234566|ref|NP_940333.1| cell division protein [Corynebacterium diphtheriae NCTC 13129] gi|38200829|emb|CAE50533.1| Cell division protein [Corynebacterium diphtheriae] Length = 824 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 35/70 (50%), Gaps = 9/70 (12%) Query: 26 TLEEFTGQVEACSNL---KVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77 T + G EA L K F+E R EAL VL GPPG GKT LA+ VA E Sbjct: 168 TFADVAGADEAIDELHEIKDFLEDP-TRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 226 Query: 78 LGVNFRSTSG 87 GV F S SG Sbjct: 227 AGVPFYSISG 236 >gi|58266798|ref|XP_570555.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134110284|ref|XP_776198.1| hypothetical protein CNBD0190 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258868|gb|EAL21551.1| hypothetical protein CNBD0190 [Cryptococcus neoformans var. neoformans B-3501A] gi|57226788|gb|AAW43248.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 1076 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L G PG GKT LA VA+E G+NF S GP I Sbjct: 712 LLLYGYPGCGKTLLASAVAKECGLNFISVKGPEI 745 >gi|332366632|gb|EGJ44375.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK1059] Length = 409 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 113 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 172 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 173 ERAERGIIYVDEIDKIA 189 >gi|332291098|ref|YP_004429707.1| AAA ATPase [Krokinobacter diaphorus 4H-3-7-5] gi|332169184|gb|AEE18439.1| AAA ATPase [Krokinobacter diaphorus 4H-3-7-5] Length = 1625 Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 R + + +L + PPG GKTTL + +A LG+ F +GP I Sbjct: 1257 RTDRMGMLLLISPPGYGKTTLMEYIANRLGLVFVKINGPAIG 1298 >gi|329939451|ref|ZP_08288787.1| cell division protein ftsH-like protein [Streptomyces griseoaurantiacus M045] gi|329301680|gb|EGG45574.1| cell division protein ftsH-like protein [Streptomyces griseoaurantiacus M045] Length = 676 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 178 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 235 >gi|327350812|gb|EGE79669.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis ATCC 18188] Length = 725 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 ADI L E T VE N ++ A+ A VL GPPG GKT LA+ VA Sbjct: 464 ADIGALGGIRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 520 Query: 77 ELGVNFRSTSGP 88 E NF S GP Sbjct: 521 ESRANFISVKGP 532 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT +A A ELGV F + S P I +G+ L D + Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCL 273 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 274 IFIDEIDAIT 283 >gi|326795824|ref|YP_004313644.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinomonas mediterranea MMB-1] gi|326546588|gb|ADZ91808.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinomonas mediterranea MMB-1] Length = 427 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N + Sbjct: 119 NILLIGPTGSGKTLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLQNCDYDV 178 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 179 EKAQRGIVYIDEIDKIS 195 >gi|320094885|ref|ZP_08026621.1| DNA polymerase III, gamma/tau subunit DnaX [Actinomyces sp. oral taxon 178 str. F0338] gi|319978181|gb|EFW09788.1| DNA polymerase III, gamma/tau subunit DnaX [Actinomyces sp. oral taxon 178 str. F0338] Length = 407 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 10/78 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T +E GQ LK A RA + H LF GP G GKTT A+++AR L Sbjct: 6 RPDTFDEVIGQEHVTEPLK-----AALRANRVTHAYLFSGPRGCGKTTSARILARCL--- 57 Query: 82 FRSTSGPVIAKAGDLAAL 99 GP A G A+ Sbjct: 58 -NCAQGPTDAPCGQCASC 74 >gi|302544353|ref|ZP_07296695.1| putative cell division protein [Streptomyces hygroscopicus ATCC 53653] gi|302461971|gb|EFL25064.1| putative cell division protein [Streptomyces himastatinicus ATCC 53653] Length = 669 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 171 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 228 >gi|292491478|ref|YP_003526917.1| ATP-dependent protease La [Nitrosococcus halophilus Nc4] gi|291580073|gb|ADE14530.1| ATP-dependent protease La [Nitrosococcus halophilus Nc4] Length = 779 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 59/251 (23%) Query: 48 KARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTN 102 K EA +L FVGPPG+GKT++ Q +AR LG F R + G + +A G + Sbjct: 338 KLNPEAKSPILCFVGPPGVGKTSVGQSIARALGRKFERMSLGGLHDEAELRGHRRTYIGA 397 Query: 103 LEDR------------DVLFIDEIHRL--------SIIVEEILYPA----MEDFQLDLMV 138 + R +L +DEI +L + + E+L PA D LDL Sbjct: 398 MPGRIIRAIRRAGYKNPLLMLDEIDKLGRDFRGDPAAALLEVLDPAQNVEFHDNYLDL-- 455 Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR---- 194 +LS+ + + + PL DR + +RL Y E+ + I +R Sbjct: 456 ---------PFDLSKVFFVTTANTLDTIPRPLLDRMEV-LRLPGYSDEEKQQIARRYLIG 505 Query: 195 ------GAKLTGLAVTDEAACEIAMRS------RGTPRIAGRLLRRVRDFAEVAHAKTIT 242 G L++ DE + R R R+ GR+ R+V +VA +T Sbjct: 506 RQIGEAGLSEIQLSIPDETLRYVIRRYTREAGVRELERVLGRIARKV--ATQVAEGQTQP 563 Query: 243 REIADAALLRL 253 + L+ L Sbjct: 564 MTVKPKKLVEL 574 >gi|302532878|ref|ZP_07285220.1| ATPase central domain-containing protein [Streptomyces sp. C] gi|302441773|gb|EFL13589.1| ATPase central domain-containing protein [Streptomyces sp. C] Length = 429 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 8/78 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVL 109 + GPPG GKTT A+ +A LG F +A G+LAA L LE R ++ Sbjct: 198 ITLFGPPGTGKTTFARAIASRLGWPFVELLPSRLADEGNLAAALRVAFARIAELE-RVLV 256 Query: 110 FIDEIHRLSIIVEEILYP 127 FIDE+ ++ + E P Sbjct: 257 FIDEVEEIAPVRTEPAQP 274 >gi|225450599|ref|XP_002277956.1| PREDICTED: similar to putative LON3 protease [Vitis vinifera] Length = 978 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 32/191 (16%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV-GPPGLGKTT 69 N S E+ D+ + E+ G + + FI K R + ++ + GPPG+GKT+ Sbjct: 416 NYSDENFDVMQAQQILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLSGPPGVGKTS 475 Query: 70 LAQVVARELGVN-FRSTSGPVI--------------AKAGDLAALLTNLEDRDVL-FIDE 113 + + +AR L FR + G + A G + L N+ + L IDE Sbjct: 476 IGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDE 535 Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 I +L + + E+L P LD + V I+LS+ + V + Sbjct: 536 IDKLGKGHAGDPASALLELLDPEQNANFLDHYL-------DVPIDLSKVLFVCTANIVEM 588 Query: 166 LTNPLQDRFGI 176 + NPL DR + Sbjct: 589 IPNPLLDRMEV 599 >gi|225016527|ref|ZP_03705719.1| hypothetical protein CLOSTMETH_00433 [Clostridium methylpentosum DSM 5476] gi|224950756|gb|EEG31965.1| hypothetical protein CLOSTMETH_00433 [Clostridium methylpentosum DSM 5476] Length = 662 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ VA E GV F S SG Sbjct: 213 VLLIGPPGTGKTLLARAVAGEAGVPFFSISG 243 >gi|28871352|ref|NP_793971.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato str. DC3000] gi|213971112|ref|ZP_03399231.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato T1] gi|301381871|ref|ZP_07230289.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato Max13] gi|302132839|ref|ZP_07258829.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854603|gb|AAO57666.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato str. DC3000] gi|213924101|gb|EEB57677.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato T1] gi|330877428|gb|EGH11577.1| ATP-dependent protease La [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331015609|gb|EGH95665.1| ATP-dependent protease La [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 805 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLAKAGVAK 554 Query: 199 TGLAVTD---EAACEIAMRSRGTPRIAGRLLRRVR 230 + L+++D A E R G + +L + VR Sbjct: 555 SKLSISDTALRAVIEGYAREAGVRHLEKQLGKLVR 589 >gi|72072160|ref|XP_787339.1| PREDICTED: similar to replication factor C p37 subunit [Strongylocentrotus purpuratus] gi|115929579|ref|XP_001178763.1| PREDICTED: similar to replication factor C p37 subunit [Strongylocentrotus purpuratus] Length = 355 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RPRT++E Q E + LK ++ A L ++LF GPPG GKT+ +REL Sbjct: 31 VEKYRPRTVDEVAYQDEVVAVLKKSLQGAD-----LPNMLFYGPPGTGKTSTILAASREL 85 >gi|320530149|ref|ZP_08031219.1| ATP-dependent metallopeptidase HflB [Selenomonas artemidis F0399] gi|320137582|gb|EFW29494.1| ATP-dependent metallopeptidase HflB [Selenomonas artemidis F0399] Length = 651 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT LA+ VA E GV F + SG + G A+ + +L D+ + Sbjct: 183 VLLFGPPGTGKTLLAKAVAGEAGVQFFTISGSDFVEMFVGVGASRVRDLFDQAKKAAPCI 242 Query: 109 LFIDEI 114 +FIDEI Sbjct: 243 VFIDEI 248 >gi|313894780|ref|ZP_07828340.1| ATP-dependent metallopeptidase HflB [Selenomonas sp. oral taxon 137 str. F0430] gi|312976461|gb|EFR41916.1| ATP-dependent metallopeptidase HflB [Selenomonas sp. oral taxon 137 str. F0430] Length = 665 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT LA+ VA E GV F + SG + G A+ + +L D+ + Sbjct: 197 VLLFGPPGTGKTLLAKAVAGEAGVQFFTISGSDFVEMFVGVGASRVRDLFDQAKKAAPCI 256 Query: 109 LFIDEI 114 +FIDEI Sbjct: 257 VFIDEI 262 >gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus] Length = 364 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ ++E Q E S LK +E A L ++LF GPPG GKT+ AREL Sbjct: 45 RPKCVDEVAFQEEVVSVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95 >gi|317133440|ref|YP_004092754.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ethanoligenens harbinense YUAN-3] gi|315471419|gb|ADU28023.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ethanoligenens harbinense YUAN-3] Length = 436 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 29/147 (19%) Query: 1 MMDREGLLSR-NVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR---A 51 +++ E +++ ++ +D I+L RP+ + E GQ +A L V + R Sbjct: 44 ILEDENVIAHPQITGDDTAITLPRPKEINEILDQYVVGQEDAKVALSVAVYNHYKRIYYG 103 Query: 52 EALD------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-- 103 E D ++L +GP G+GKT LAQ +A L V F + +AG + + N+ Sbjct: 104 ETSDVDLQKSNILLLGPTGVGKTMLAQTLAHILKVPFAIADATTLTEAGYVGEDVENILL 163 Query: 104 -----EDRDV-------LFIDEIHRLS 118 D DV ++IDEI +++ Sbjct: 164 RLIQAADYDVERAEHGIIYIDEIDKIA 190 >gi|302870328|ref|YP_003838965.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC 27029] gi|315503395|ref|YP_004082282.1| ATP-dependent metalloprotease ftsh [Micromonospora sp. L5] gi|302573187|gb|ADL49389.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC 27029] gi|315410014|gb|ADU08131.1| ATP-dependent metalloprotease FtsH [Micromonospora sp. L5] Length = 670 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ A+ +AL VL GPPG GKT LA+ VA E GV F S SG Sbjct: 182 VEELHEIKDFLQNP-AKYQALGAKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISG 239 >gi|256073723|ref|XP_002573178.1| 26S protease regulatory subunit S10b [Schistosoma mansoni] gi|238658352|emb|CAZ29410.1| 26S protease regulatory subunit S10b, putative [Schistosoma mansoni] Length = 395 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRS--TSGPVIAKAGDLAALLTNLED--RD----V 108 L GPPG GKT LA+ VA +L VNF +SG V G+ A L+ + + RD + Sbjct: 176 CLLYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFNYARDHQPCI 235 Query: 109 LFIDEI 114 +F+DEI Sbjct: 236 IFMDEI 241 >gi|237748251|ref|ZP_04578731.1| ftsH protein [Oxalobacter formigenes OXCC13] gi|229379613|gb|EEO29704.1| ftsH protein [Oxalobacter formigenes OXCC13] Length = 650 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 +L VGPPG GKT LA+ VA E GV F S +G + G AA + +L ++ + Sbjct: 200 ILLVGPPGTGKTLLARAVAGEAGVPFFSINGSEFVEMFVGVGAARVRDLFEQARKQAPAI 259 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 260 IFIDEIDAL 268 >gi|254385393|ref|ZP_05000721.1| AAA ATPase [Streptomyces sp. Mg1] gi|194344266|gb|EDX25232.1| AAA ATPase [Streptomyces sp. Mg1] Length = 429 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 8/78 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVL 109 + GPPG GKTT A+ +A LG F +A G+LAA L LE R ++ Sbjct: 198 ITLFGPPGTGKTTFARAIASRLGWPFVELLPSRLADEGNLAAALRTAFARIAELE-RVLV 256 Query: 110 FIDEIHRLSIIVEEILYP 127 FIDE+ ++ + E P Sbjct: 257 FIDEVEEIAPVRTEPAQP 274 >gi|158522704|ref|YP_001530574.1| ATP-dependent protease ATP-binding subunit [Desulfococcus oleovorans Hxd3] gi|238686897|sp|A8ZXB8|CLPX_DESOH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|158511530|gb|ABW68497.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfococcus oleovorans Hxd3] Length = 417 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + +LL N + Sbjct: 110 NILLIGPTGCGKTLLAQTLARFLNVPFTIADATTLTEAGYVGEDVENIILSLLQNADYDV 169 Query: 105 ---DRDVLFIDEIHRLS 118 R ++++DEI +++ Sbjct: 170 EKAQRGIVYVDEIDKIA 186 >gi|119510340|ref|ZP_01629475.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414] gi|119464977|gb|EAW45879.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414] Length = 622 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL +GPPG GKT LA+ +A E GV F S SG V A + L +D + Sbjct: 204 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDSAPCL 263 Query: 109 LFIDEI 114 +FIDEI Sbjct: 264 IFIDEI 269 >gi|8569089|gb|AAF76434.1|AC015445_1 Contains similarity to p60 katanin from Chlamydomonas reinhardtii gb|AF205377 and contains an AAA domain PF|00004 [Arabidopsis thaliana] Length = 627 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E G NF S +G + GD L L + Sbjct: 376 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVI 435 Query: 109 LFIDEIHRL 117 +F+DEI L Sbjct: 436 IFVDEIDSL 444 >gi|15896449|ref|NP_349798.1| ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum ATCC 824] gi|15026273|gb|AAK81138.1|AE007816_2 ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum ATCC 824] gi|325510607|gb|ADZ22243.1| ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum EA 2018] Length = 602 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ V+ E GV F S SG Sbjct: 196 VLLVGPPGTGKTLLAKAVSGEAGVPFFSISG 226 >gi|328768691|gb|EGF78737.1| hypothetical protein BATDEDRAFT_12969 [Batrachochytrium dendrobatidis JAM81] Length = 645 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA----------GDLAALLTN--- 102 + VGPPG+GKT+L + +A LG F S G + +A G L L+ Sbjct: 199 LCLVGPPGVGKTSLGKSIANALGRKFHRISLGGIHDEAEIRGHRRTYLGSLPGLIVQGLR 258 Query: 103 --LEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + VL +DEI +L S + E+L P D +G V NLS Sbjct: 259 QCGVNNPVLLLDEIDKLGHDYRGDPSSALLEVLDPEQNSTFTDHYLG-------VPFNLS 311 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 IA + + PL DR + ++++ Y +++ +I ++ Sbjct: 312 NVLFIATANDMDTIPAPLLDRMEV-VQISGYTVDEKLSIARQ 352 >gi|327460433|gb|EGF06770.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK1057] gi|327474152|gb|EGF19562.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK408] gi|332360699|gb|EGJ38508.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK49] gi|332360755|gb|EGJ38563.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK355] Length = 409 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 113 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 172 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 173 ERAERGIIYVDEIDKIA 189 >gi|325832734|ref|ZP_08165497.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. HGA1] gi|325485873|gb|EGC88334.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. HGA1] Length = 750 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 L VGPPG GKT LA+ VA E GV F S SG V A + L +D + Sbjct: 253 CLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFQQAKDASPAI 312 Query: 109 LFIDEI 114 +FIDEI Sbjct: 313 IFIDEI 318 >gi|300710838|ref|YP_003736652.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus jeotgali B3] gi|299124521|gb|ADJ14860.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus jeotgali B3] Length = 757 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ +F + SGP I Sbjct: 231 VLLHGPPGTGKTLMAKAVANEIDASFHTISGPEI 264 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A VL GPPG GKT LA+ VA E NF S GP Sbjct: 499 DAAKGVLLYGPPGTGKTLLAKAVANEAESNFISIKGP 535 >gi|294630627|ref|ZP_06709187.1| cell division protein [Streptomyces sp. e14] gi|292833960|gb|EFF92309.1| cell division protein [Streptomyces sp. e14] Length = 668 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226 >gi|291520783|emb|CBK79076.1| ATP-dependent protease La [Coprococcus catus GD/7] Length = 779 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 42/210 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG GKT++A+ +AR L + R + G V +A G +A+ L+ Sbjct: 349 LCLVGPPGTGKTSIARSIARALNKKYVRISLGGVHDEAEIRGHRRTYIGAMPGRIASGLS 408 Query: 102 NLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA-----RSVKINLSRFT 155 + ++ V+ +DEI ++S + + A+ L+++ E S + ++LS Sbjct: 409 HAGVKNPVMLLDEIDKVSTDYKGDTFSAL----LEVLDSEQNSKFRDNYLELPLDLSDVL 464 Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKLTGLAVTD 205 IA + + PL DR I I +N Y + E L K + G K L ++D Sbjct: 465 FIATANSLSTIPRPLLDRMEI-IEINTYTQNEKLHIAKEHLIEKQMKANGIKAKQLTISD 523 Query: 206 EAACEIAMRS------RGTPRIAGRLLRRV 229 +A +I + RG R G + R+ Sbjct: 524 KAIEDIILYYTRESGVRGLERCLGDICRKT 553 >gi|282918292|ref|ZP_06326032.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus C427] gi|282317858|gb|EFB48227.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus C427] Length = 697 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|260222836|emb|CBA32802.1| ATP-dependent Clp protease ATP-binding subunit clpX [Curvibacter putative symbiont of Hydra magnipapillata] Length = 421 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 114 AKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVLKLLQSCN 173 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 YDVERAQRGIVYIDEIDKIS 193 >gi|256369535|ref|YP_003107045.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM 4915] gi|306841835|ref|ZP_07474517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp. BO2] gi|306843973|ref|ZP_07476568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp. BO1] gi|255999697|gb|ACU48096.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM 4915] gi|306275728|gb|EFM57452.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp. BO1] gi|306288062|gb|EFM59459.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp. BO2] Length = 424 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|237736665|ref|ZP_04567146.1| ATP-dependent protease ATP-binding subunit [Fusobacterium mortiferum ATCC 9817] gi|229420527|gb|EEO35574.1| ATP-dependent protease ATP-binding subunit [Fusobacterium mortiferum ATCC 9817] Length = 412 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +VL +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 114 NVLLIGPTGSGKTLLAQTLARSLKVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 ++ +++IDEI +++ Sbjct: 174 EAAEKGIIYIDEIDKIA 190 >gi|307150315|ref|YP_003885699.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] gi|306980543|gb|ADN12424.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] Length = 628 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|156089603|ref|XP_001612208.1| ATPase, AAA family protein [Babesia bovis] gi|154799462|gb|EDO08640.1| ATPase, AAA family protein [Babesia bovis] Length = 893 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 26/46 (56%) Query: 45 EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 E K + +A VL GPPG KT +A+ VA E +NF S GP I Sbjct: 583 EYKKLQIQAPRGVLLYGPPGCSKTLMAKAVATESHMNFISVKGPEI 628 >gi|153007227|ref|YP_001381552.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5] gi|152030800|gb|ABS28568.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5] Length = 623 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 15/107 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA + LK +E K A VL VGPPG GKT LA+ VA E Sbjct: 163 TFDDVAGVDEAKAELKEVVEFLKDPKRYGRLGARMPKGVLLVGPPGTGKTLLAKAVAGEA 222 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRL 117 V F S SG + G AA + +L ++ ++FIDE+ L Sbjct: 223 AVPFFSISGSEFVEMFVGVGAARVRDLFEQARLKAPAIIFIDELDAL 269 >gi|91088941|ref|XP_973644.1| PREDICTED: similar to cutlet CG33122-PA [Tribolium castaneum] Length = 771 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 15/96 (15%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD---LAALLTNLEDRDVL--FID 112 L GPPGLGKTTLA +VAR G N V A D A T LE+ + +D Sbjct: 296 LLCGPPGLGKTTLAHMVARHAGYNV------VEVNASDDRSCEAFKTALENATQMRSVVD 349 Query: 113 EIHRLSIIV-EEI--LYPAMEDFQLDLMVGEGPSAR 145 + R + +V +EI P+ D+ + + G GPS R Sbjct: 350 QERRPNCLVFDEIDGAPPSSIDYLVKFVQG-GPSGR 384 >gi|3808101|emb|CAA09935.1| chloroplast protease [Capsicum annuum] Length = 693 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 >gi|50954516|ref|YP_061804.1| ATP-dependent protease ATP-binding subunit [Leifsonia xyli subsp. xyli str. CTCB07] gi|61211467|sp|Q6AFZ6|CLPX_LEIXX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|50950998|gb|AAT88699.1| ATP-dependent Clp protease ATP binding subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 424 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ D Sbjct: 116 AKSNILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 175 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDE+ +++ Sbjct: 176 YDVKRAETGIIYIDEVDKIA 195 >gi|23097484|ref|NP_690950.1| DNA polymerase III gamma and tau subunits [Oceanobacillus iheyensis HTE831] gi|22775707|dbj|BAC11985.1| DNA polymerase III gamma and tau subunits [Oceanobacillus iheyensis HTE831] Length = 569 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 92/242 (38%), Gaps = 49/242 (20%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELG 79 + RPRT E+ GQ L+ IE K H LF GP G GKT+ A++ A+ + Sbjct: 9 VWRPRTFEDVVGQTHITRTLQNAIEQDK-----FSHAYLFSGPRGTGKTSAAKIFAQTIN 63 Query: 80 VNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI------------------ 119 PV + AA + + DV+ ID S+ Sbjct: 64 CEH----APVKEPCNECAACRGIQDGSVSDVIEIDAASNTSVDDIRDIRDKVKYAPSTVP 119 Query: 120 ----IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT---RVGLLTNPLQD 172 I++E+ ++ F L E P V I ATT ++ L Sbjct: 120 YKVYIIDEVHMISVNAFNALLKTLEEPPKHVV--------FILATTEPHKIPLTIISRCQ 171 Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232 RF N + ++TI+Q + VTDEA +A+ + G R A +L + + Sbjct: 172 RFDFKPISNQSIVGRMQTIMQ----AENIHVTDEALESVALAAEGGMRDALSILDQAISY 227 Query: 233 AE 234 +E Sbjct: 228 SE 229 >gi|86131728|ref|ZP_01050325.1| conserved hypothetical protein [Dokdonia donghaensis MED134] gi|85817550|gb|EAQ38724.1| conserved hypothetical protein [Dokdonia donghaensis MED134] Length = 1625 Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 R + + +L + PPG GKTTL + +A LG+ F +GP I Sbjct: 1257 RTDRMGMLLLISPPGYGKTTLMEYIANRLGLVFVKINGPAIG 1298 >gi|116627469|ref|YP_820088.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus thermophilus LMD-9] gi|122267933|sp|Q03LN0|CLPX_STRTD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|116100746|gb|ABJ65892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus thermophilus LMD-9] Length = 408 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 112 NILMIGPTGSGKTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 171 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 172 ERAERGIIYVDEIDKIA 188 >gi|312865011|ref|ZP_07725239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus downei F0415] gi|311099122|gb|EFQ57338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus downei F0415] Length = 400 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 16/92 (17%) Query: 43 FIEAAKARAEAL--DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DL 96 F+E+A+ L ++L +GP G GKT LAQ +A+ L V F + +AG D+ Sbjct: 89 FVESAQDEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDV 148 Query: 97 AALLTNL----------EDRDVLFIDEIHRLS 118 +L L +R ++++DEI +++ Sbjct: 149 ENILLKLIQAADFNIERAERGIIYVDEIDKIA 180 >gi|300868425|ref|ZP_07113046.1| FtsH peptidase [Oscillatoria sp. PCC 6506] gi|300333559|emb|CBN58234.1| FtsH peptidase [Oscillatoria sp. PCC 6506] Length = 628 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|302785487|ref|XP_002974515.1| hypothetical protein SELMODRAFT_149856 [Selaginella moellendorffii] gi|300158113|gb|EFJ24737.1| hypothetical protein SELMODRAFT_149856 [Selaginella moellendorffii] Length = 597 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 170 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 200 >gi|284929257|ref|YP_003421779.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] gi|284809701|gb|ADB95398.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] Length = 626 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|282882852|ref|ZP_06291457.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis 315-B] gi|281297263|gb|EFA89754.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis 315-B] Length = 651 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E V F S SG + A + L E++ ++ Sbjct: 215 LLVGPPGTGKTLLAKAVASEAEVPFFSISGSEFVEMFVGLGAAKVRDLFKQAEEKAPCII 274 Query: 110 FIDEI 114 FIDEI Sbjct: 275 FIDEI 279 >gi|226311383|ref|YP_002771277.1| ATP-dependent protease La homolog [Brevibacillus brevis NBRC 100599] gi|226094331|dbj|BAH42773.1| ATP-dependent protease La homolog [Brevibacillus brevis NBRC 100599] Length = 565 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP TLEE GQ + L+ + + HV+ GPPG+GKT A+VV E N Sbjct: 65 RPATLEEIVGQEDGLRALRAALCGPNPQ-----HVIIYGPPGVGKTAAARVVLEEAKKN 118 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] gi|254039948|gb|ACT56744.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|197302445|ref|ZP_03167500.1| hypothetical protein RUMLAC_01173 [Ruminococcus lactaris ATCC 29176] gi|197298343|gb|EDY32888.1| hypothetical protein RUMLAC_01173 [Ruminococcus lactaris ATCC 29176] Length = 423 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 28/129 (21%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63 DI+LL P ++ F GQ EA L V + R A ++L +GP Sbjct: 60 DINLLTPEEMKAFLDQYVIGQDEAKKVLSVAVYNHYKRILAEQDLGVELQKSNILMLGPT 119 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109 G GKT LAQ +A+ L V F + +AG + + N+ + ++ Sbjct: 120 GCGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKVIQAADGDIERAEHGII 179 Query: 110 FIDEIHRLS 118 +IDEI +++ Sbjct: 180 YIDEIDKIT 188 >gi|189199446|ref|XP_001936060.1| DNA-dependent ATPase MGS1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983159|gb|EDU48647.1| DNA-dependent ATPase MGS1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 534 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 26/152 (17%) Query: 22 LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 +RP +LE GQ V L+ ++ + L ++ G PG GKTT+A+++A G Sbjct: 123 MRPMSLEHVYGQELVGPKGILRAMVDEGR-----LPSMVLWGRPGTGKTTIARLIANTSG 177 Query: 80 VNF---RSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129 F STS + + A+ T + ++F DE+HR S ++ + Sbjct: 178 SRFVEINSTS----TRLEQVRAIFTEASQDLRLTGRKTIVFCDELHRFSKTQQDAFLGPV 233 Query: 130 EDFQLDLMVG--EGPSARSVKINLSR---FTL 156 E + L+ E PS + + LSR FTL Sbjct: 234 ESGTITLIAATTENPSFKIISALLSRCRTFTL 265 >gi|218440251|ref|YP_002378580.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] gi|218172979|gb|ACK71712.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] Length = 628 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|153814722|ref|ZP_01967390.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756] gi|317500253|ref|ZP_07958482.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA] gi|331087513|ref|ZP_08336447.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847753|gb|EDK24671.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756] gi|316898349|gb|EFV20391.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA] gi|330406265|gb|EGG85782.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium 3_1_46FAA] Length = 645 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E GV F S SG + A + L ++ ++ Sbjct: 205 LLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGMGASKVRDLFKQANEKAPCIV 264 Query: 110 FIDEI 114 FIDEI Sbjct: 265 FIDEI 269 >gi|120610145|ref|YP_969823.1| ATP-dependent protease ATP-binding subunit ClpX [Acidovorax citrulli AAC00-1] gi|326316314|ref|YP_004233986.1| ATP-dependent Clp protease ATP-binding subunit clpX [Acidovorax avenae subsp. avenae ATCC 19860] gi|166214750|sp|A1TM61|CLPX_ACIAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|120588609|gb|ABM32049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax citrulli AAC00-1] gi|323373150|gb|ADX45419.1| ATP-dependent Clp protease ATP-binding subunit clpX [Acidovorax avenae subsp. avenae ATCC 19860] Length = 421 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 114 AKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCN 173 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 YEVERAQRGIVYIDEIDKIS 193 >gi|29831209|ref|NP_825843.1| cell division protein FtsH [Streptomyces avermitilis MA-4680] gi|29608323|dbj|BAC72378.1| putative cell division protein FtsH [Streptomyces avermitilis MA-4680] Length = 664 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226 >gi|4325041|gb|AAD17230.1| FtsH-like protein Pftf precursor [Nicotiana tabacum] Length = 693 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 >gi|71900576|ref|ZP_00682703.1| Peptidase S16, ATP-dependent protease La [Xylella fastidiosa Ann-1] gi|71729633|gb|EAO31737.1| Peptidase S16, ATP-dependent protease La [Xylella fastidiosa Ann-1] Length = 823 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 46/191 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+LAQ +A+ F R + G V +A G + L Sbjct: 353 LCLVGPPGVGKTSLAQSIAKATNRKFVRMSLGGVRDEAEVRGHRRTYVGSMPGRVVQNLN 412 Query: 102 NLEDRDVLFI-DEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 + ++ LF+ DEI ++ S + E+L P A D LD V Sbjct: 413 KVGSKNPLFVLDEIDKMAMDFRGDPSAALLEVLDPEQNNAFNDHYLD-----------VD 461 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAV 203 ++LS +A + + + PL DR + IR+ Y E E L + +V + + GLAV Sbjct: 462 LDLSEVMFVATSNSLN-IPGPLLDRMEV-IRIPGYTEDEKLNIATRYLVPKQIRANGLAV 519 Query: 204 TDEAACEIAMR 214 + A E A+R Sbjct: 520 EELAIGEDAIR 530 >gi|330981616|gb|EGH79719.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 805 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLAKAGVAK 554 Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230 L+++D A E R G + +L + VR Sbjct: 555 NKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589 >gi|328952153|ref|YP_004369487.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfobacca acetoxidans DSM 11109] gi|328452477|gb|AEB08306.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfobacca acetoxidans DSM 11109] Length = 417 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ ++ NL Sbjct: 113 NILLIGPTGSGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENIILNLLQVADYDI 172 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 173 EKATRGIVYIDEIDKIA 189 >gi|323487347|ref|ZP_08092647.1| hypothetical protein HMPREF9474_04398 [Clostridium symbiosum WAL-14163] gi|323694214|ref|ZP_08108390.1| cell division protein FtsH [Clostridium symbiosum WAL-14673] gi|323399392|gb|EGA91790.1| hypothetical protein HMPREF9474_04398 [Clostridium symbiosum WAL-14163] gi|323501687|gb|EGB17573.1| cell division protein FtsH [Clostridium symbiosum WAL-14673] Length = 592 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 V+ VGPPG GKT LA+ VA E GV F S SG Sbjct: 187 VILVGPPGTGKTLLAKAVAGEAGVPFFSISG 217 >gi|317484643|ref|ZP_07943546.1| ATP-dependent metallopeptidase HflB [Bilophila wadsworthia 3_1_6] gi|316924117|gb|EFV45300.1| ATP-dependent metallopeptidase HflB [Bilophila wadsworthia 3_1_6] Length = 650 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 190 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 220 >gi|314937282|ref|ZP_07844624.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp. hominis C80] gi|313654578|gb|EFS18328.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp. hominis C80] Length = 710 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|300814179|ref|ZP_07094462.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511836|gb|EFK39053.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 651 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E V F S SG + A + L E++ ++ Sbjct: 215 LLVGPPGTGKTLLAKAVASEAEVPFFSISGSEFVEMFVGLGAAKVRDLFKQAEEKAPCII 274 Query: 110 FIDEI 114 FIDEI Sbjct: 275 FIDEI 279 >gi|297562334|ref|YP_003681308.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846782|gb|ADH68802.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 424 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 32/131 (24%) Query: 20 SLLRPRTLEEF-----TGQVEACSNLKV--FIEAAKARAE-----------ALDHVLFVG 61 SL +PR + EF GQ +A L V + + R+E A ++L +G Sbjct: 60 SLPKPREIYEFLDSYVIGQEQAKKALSVAVYNHYKRVRSEGDRPGEEDVEIAKSNILLLG 119 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV------ 108 P G GKT LAQ +AR L V F + +AG + + N+ D DV Sbjct: 120 PTGSGKTLLAQTLARILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 179 Query: 109 -LFIDEIHRLS 118 ++IDE+ +++ Sbjct: 180 IIYIDEVDKVA 190 >gi|294653582|ref|NP_714595.2| magnesium chelatase, putative [Leptospira interrogans serovar Lai str. 56601] gi|293630704|gb|AAN51610.2| MoxR-like ATPase [Leptospira interrogans serovar Lai str. 56601] Length = 327 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 36/208 (17%) Query: 15 EDADISLLRPRTLE-----EFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 ED + + ++ TL+ E TGQ E N+ V + HVL G PGL KT Sbjct: 7 EDLEFARIKLETLKQELGKEITGQDEVIRNVLVCLICQ-------GHVLLEGMPGLAKTL 59 Query: 70 LAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRD------VLFIDEIHRL 117 LA+ +A L +NF+ DL + T E R VL DEI+R Sbjct: 60 LARSLASALDLNFKRIQFTPDLLPADLVGTVVFNPKTTEFETRKGPVFTGVLLADEINRA 119 Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL-TNPL----QD 172 V+ L +ME + + +G+ ++ K++ F +IA + T PL D Sbjct: 120 PAKVQSALLESME--EKTVTIGD----KTYKLD-KPFLVIATQNPIDQDGTYPLPEAQMD 172 Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 RF + I +++ +E+ +I+ + K++ Sbjct: 173 RFLMKINVDYPTLEEEVSILDQHGKISS 200 >gi|289760036|ref|ZP_06519414.1| ATPase [Mycobacterium tuberculosis T85] gi|289715600|gb|EFD79612.1| ATPase [Mycobacterium tuberculosis T85] Length = 404 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57 RE LL+ ++ D I L R + E +V A +KV A+ H+ Sbjct: 146 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 197 Query: 58 LFVGPPGLGKTTLAQVVA 75 +F GPPG GKTT+A+VVA Sbjct: 198 IFTGPPGTGKTTIARVVA 215 >gi|290981598|ref|XP_002673517.1| predicted protein [Naegleria gruberi] gi|284087101|gb|EFC40773.1| predicted protein [Naegleria gruberi] Length = 459 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 10/70 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------GPVIAKAGDLAALLTNLEDRD 107 VLF GPPG GKT+LA+ +A+E F + G G L + T ++ Sbjct: 220 VLFYGPPGTGKTSLAKAIAKECNCAFLNVKREFLSDFLYGETEKLVGALFSFATKVKPC- 278 Query: 108 VLFIDEIHRL 117 ++FIDEI L Sbjct: 279 IIFIDEIESL 288 >gi|289578969|ref|YP_003477596.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus Ab9] gi|289528682|gb|ADD03034.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus Ab9] Length = 510 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 16/121 (13%) Query: 10 RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61 N+++ D S + T ++ G E LKV I+ K A+ +LF G Sbjct: 65 NNITEAKEDTSHRKNNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYG 124 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDE 113 PPG GKT LA +A E F S SG V A + AL + ++FIDE Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSTPSIIFIDE 184 Query: 114 I 114 I Sbjct: 185 I 185 >gi|260792464|ref|XP_002591235.1| hypothetical protein BRAFLDRAFT_106463 [Branchiostoma floridae] gi|229276438|gb|EEN47246.1| hypothetical protein BRAFLDRAFT_106463 [Branchiostoma floridae] Length = 345 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/25 (68%), Positives = 18/25 (72%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVN 81 L GPPGLGKTTLA V+AR G N Sbjct: 312 ALLCGPPGLGKTTLAHVIARHAGYN 336 >gi|170761619|ref|YP_001787678.1| stage V sporulation protein K [Clostridium botulinum A3 str. Loch Maree] gi|169408608|gb|ACA57019.1| stage V sporulation protein K [Clostridium botulinum A3 str. Loch Maree] Length = 1212 Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 36/204 (17%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALD-HVLFVGPPGLGKTTLAQVVAREL----- 78 ++++++ +E ++ E++ +A + H++F G PG GKTT+A++VA+ L Sbjct: 423 KSVKQYVESLEDNLKIQKMRESSGFKAANISMHMIFTGNPGTGKTTIARIVAKYLKALGI 482 Query: 79 ---GVNFRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEI------- 124 G T ++ + A LTN + VLFIDE + L E+I Sbjct: 483 LSQGQLREVTRADLVGQYVGHTAKLTNDVIKSSLGGVLFIDEAYALCRDKEDIFGIEAID 542 Query: 125 -LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNF 182 L +ED + DL+V K ++ F L TNP L+ RF I Sbjct: 543 TLVKGIEDNREDLVV----ILAGYKDEMNEF----------LKTNPGLKSRFPNIINFED 588 Query: 183 YEIEDLKTIVQRGAKLTGLAVTDE 206 Y E++ I AK G ++++ Sbjct: 589 YTSEEMYEISLVTAKSKGYKISED 612 >gi|157149993|ref|YP_001450429.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus gordonii str. Challis substr. CH1] gi|262282292|ref|ZP_06060060.1| ATP-dependent protease ATP-binding subunit [Streptococcus sp. 2_1_36FAA] gi|189044157|sp|A8AXB9|CLPX_STRGC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157074787|gb|ABV09470.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus gordonii str. Challis substr. CH1] gi|262261583|gb|EEY80281.1| ATP-dependent protease ATP-binding subunit [Streptococcus sp. 2_1_36FAA] Length = 409 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 113 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 172 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 173 ERAERGIIYVDEIDKIA 189 >gi|123411246|ref|XP_001303853.1| pontin [Trichomonas vaginalis G3] gi|121885263|gb|EAX90923.1| pontin, putative [Trichomonas vaginalis G3] Length = 463 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 29/50 (58%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQ EA + +E K R A +LFVG PG GKT +A +++ELG Sbjct: 42 FVGQREAREAAGIIVELIKKRHMAGRALLFVGAPGTGKTAIALAISQELG 91 >gi|157112522|ref|XP_001651818.1| aaa atpase [Aedes aegypti] gi|108878039|gb|EAT42264.1| aaa atpase [Aedes aegypti] Length = 624 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 382 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 441 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 442 IFIDEIDSL 450 >gi|50303759|ref|XP_451825.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49640957|emb|CAH02218.1| KLLA0B06523p [Kluyveromyces lactis] Length = 997 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L G PG GKT LA VA++ G+NF S GP I Sbjct: 681 ILLYGYPGCGKTMLASAVAQQCGLNFISVKGPEI 714 >gi|21954076|gb|AAK76625.2| putative FtsH protease [Arabidopsis thaliana] Length = 501 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 72 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 102 >gi|50549279|ref|XP_502110.1| YALI0C21868p [Yarrowia lipolytica] gi|74689662|sp|Q6CB52|RUVB1_YARLI RecName: Full=RuvB-like helicase 1 gi|49647977|emb|CAG82430.1| YALI0C21868p [Yarrowia lipolytica] Length = 453 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 7/129 (5%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--VNFRSTSG 87 F GQ EA L + ++ +A + +L G PG GKT LA V++ELG V F G Sbjct: 40 FVGQTEAREALGLVVDLIRASKMSGRGILLAGGPGTGKTALALAVSQELGPKVPFCPIVG 99 Query: 88 PVI--AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 I A+ AAL+ N L I E I E+ E+ + D + G G + R Sbjct: 100 SEIFSAEVKKTAALMENFRRAIGLRIKETK--DIYEGEVTELTPEEAE-DPLGGYGKTIR 156 Query: 146 SVKINLSRF 154 SV + L + Sbjct: 157 SVVVGLKSY 165 >gi|163848711|ref|YP_001636755.1| ATPase central domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222526654|ref|YP_002571125.1| AAA ATPase central domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163670000|gb|ABY36366.1| AAA ATPase central domain protein [Chloroflexus aurantiacus J-10-fl] gi|222450533|gb|ACM54799.1| AAA ATPase central domain protein [Chloroflexus sp. Y-400-fl] Length = 658 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 12/70 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA----GDLAALLTNLEDRD----- 107 +L +GPPG GK+ LAQ ++ E GV F S P + A G++ + + R Sbjct: 152 ILLIGPPGTGKSYLAQAISTEAGVPFGYLSAPSLLSAWMGMGNIKVMNLYRKARRLAREY 211 Query: 108 ---VLFIDEI 114 +LFIDEI Sbjct: 212 GACILFIDEI 221 >gi|15923501|ref|NP_371035.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926188|ref|NP_373721.1| cell-division protein [Staphylococcus aureus subsp. aureus N315] gi|21282195|ref|NP_645283.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Staphylococcus aureus subsp. aureus MW2] gi|49482738|ref|YP_039962.1| cell division protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49485375|ref|YP_042596.1| putative cell division protein [Staphylococcus aureus subsp. aureus MSSA476] gi|88194271|ref|YP_499063.1| hypothetical protein SAOUHSC_00486 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266970|ref|YP_001245913.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus JH9] gi|150393016|ref|YP_001315691.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus JH1] gi|156978839|ref|YP_001441098.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3] gi|253315220|ref|ZP_04838433.1| cell-division protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730979|ref|ZP_04865144.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735246|ref|ZP_04869411.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus TCH130] gi|255005304|ref|ZP_05143905.2| cell-division protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424623|ref|ZP_05601051.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427289|ref|ZP_05603690.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257429926|ref|ZP_05606312.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432628|ref|ZP_05608990.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410] gi|257435532|ref|ZP_05611582.1| cell-division protein [Staphylococcus aureus subsp. aureus M876] gi|257794249|ref|ZP_05643228.1| cell division protein [Staphylococcus aureus A9781] gi|258407234|ref|ZP_05680379.1| cell division protein [Staphylococcus aureus A9763] gi|258420798|ref|ZP_05683734.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258429628|ref|ZP_05688302.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299] gi|258446102|ref|ZP_05694263.1| cell-division protein [Staphylococcus aureus A6300] gi|258448010|ref|ZP_05696140.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224] gi|258453844|ref|ZP_05701817.1| cell-division protein [Staphylococcus aureus A5937] gi|269202131|ref|YP_003281400.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus ED98] gi|282895119|ref|ZP_06303339.1| cell division protease FtsH [Staphylococcus aureus A8117] gi|282903097|ref|ZP_06310989.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus C160] gi|282904886|ref|ZP_06312746.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282907833|ref|ZP_06315671.1| cell-division protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910149|ref|ZP_06317955.1| cell-division protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282913339|ref|ZP_06321130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus M899] gi|282923043|ref|ZP_06330729.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus C101] gi|283768946|ref|ZP_06341855.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus H19] gi|283957301|ref|ZP_06374759.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus A017934/97] gi|293500388|ref|ZP_06666240.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus 58-424] gi|293509327|ref|ZP_06668043.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus M809] gi|293515915|ref|ZP_06670605.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus M1015] gi|295407401|ref|ZP_06817198.1| cell division protease FtsH [Staphylococcus aureus A8819] gi|295427045|ref|ZP_06819682.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276164|ref|ZP_06858671.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus MR1] gi|297207386|ref|ZP_06923825.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246481|ref|ZP_06930321.1| cell division protease FtsH [Staphylococcus aureus A8796] gi|297591578|ref|ZP_06950215.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus MN8] gi|300910345|ref|ZP_07127798.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus TCH70] gi|13700401|dbj|BAB41699.1| cell-division protein [Staphylococcus aureus subsp. aureus N315] gi|14246279|dbj|BAB56673.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50] gi|21203631|dbj|BAB94331.1| cell-division protein [Staphylococcus aureus subsp. aureus MW2] gi|49240867|emb|CAG39534.1| putative cell division protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243818|emb|CAG42243.1| putative cell division protein [Staphylococcus aureus subsp. aureus MSSA476] gi|87201829|gb|ABD29639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740039|gb|ABQ48337.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus JH9] gi|149945468|gb|ABR51404.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus JH1] gi|156720974|dbj|BAF77391.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3] gi|253725291|gb|EES94020.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726806|gb|EES95535.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus TCH130] gi|257272650|gb|EEV04770.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275940|gb|EEV07408.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279442|gb|EEV10037.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282493|gb|EEV12626.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410] gi|257285169|gb|EEV15286.1| cell-division protein [Staphylococcus aureus subsp. aureus M876] gi|257788221|gb|EEV26561.1| cell division protein [Staphylococcus aureus A9781] gi|257841192|gb|EEV65641.1| cell division protein [Staphylococcus aureus A9763] gi|257843190|gb|EEV67603.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257849687|gb|EEV73654.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299] gi|257855079|gb|EEV78021.1| cell-division protein [Staphylococcus aureus A6300] gi|257858700|gb|EEV81573.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224] gi|257864015|gb|EEV86770.1| cell-division protein [Staphylococcus aureus A5937] gi|262074421|gb|ACY10394.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus ED98] gi|282314562|gb|EFB44949.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus C101] gi|282322810|gb|EFB53130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus M899] gi|282325997|gb|EFB56303.1| cell-division protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282328309|gb|EFB58584.1| cell-division protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282332003|gb|EFB61512.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282596523|gb|EFC01483.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus C160] gi|282762537|gb|EFC02677.1| cell division protease FtsH [Staphylococcus aureus A8117] gi|283461127|gb|EFC08213.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus H19] gi|283469803|emb|CAQ49014.1| putative Cell division protease FtsH homolog [Staphylococcus aureus subsp. aureus ST398] gi|283791225|gb|EFC30035.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus A017934/97] gi|285816210|gb|ADC36697.1| Cell division protein FtsH [Staphylococcus aureus 04-02981] gi|290921323|gb|EFD98381.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus M1015] gi|291096348|gb|EFE26608.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus 58-424] gi|291467872|gb|EFF10382.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus M809] gi|294967758|gb|EFG43790.1| cell division protease FtsH [Staphylococcus aureus A8819] gi|295129048|gb|EFG58677.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887949|gb|EFH26843.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176668|gb|EFH35930.1| cell division protease FtsH [Staphylococcus aureus A8796] gi|297575447|gb|EFH94164.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus MN8] gi|300888334|gb|EFK83521.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus TCH70] gi|302332224|gb|ADL22417.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Staphylococcus aureus subsp. aureus JKD6159] gi|312436399|gb|ADQ75470.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus TCH60] gi|312829006|emb|CBX33848.1| cell division protease ftsH homolog [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128639|gb|EFT84642.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS03] gi|315193873|gb|EFU24267.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS00] gi|329729768|gb|EGG66165.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus 21189] gi|329731083|gb|EGG67455.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus 21193] Length = 697 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|329725069|gb|EGG61564.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus 21172] Length = 697 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|320165062|gb|EFW41961.1| pontin [Capsaspora owczarzaki ATCC 30864] Length = 490 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 27/50 (54%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ EA V +E +++ A L GPPG GKT LA VA+ELG Sbjct: 73 LVGQTEAREACGVIVELIRSKKMAGRAALLAGPPGTGKTALALAVAQELG 122 >gi|304404688|ref|ZP_07386349.1| ATPase associated with various cellular activities AAA_3 [Paenibacillus curdlanolyticus YK9] gi|304346495|gb|EFM12328.1| ATPase associated with various cellular activities AAA_3 [Paenibacillus curdlanolyticus YK9] Length = 322 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 28/201 (13%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------LTNLEDR--- 106 HVL PG GKT LA+ AR + +FR DL+ + L+ E R Sbjct: 42 HVLLEDVPGTGKTLLAKSFARSVDCSFRRVQFTPDLMPSDLSGISFFNQKLSEFEFRPGP 101 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 +VL DEI+R + + L ME+ Q+ + +G + + + F +IA + Sbjct: 102 LFTNVLLADEINRATPRTQSSLLECMEERQISV---DGQTHQL----MPPFLVIATQNPI 154 Query: 164 GLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGL----AVTDEAACEIAMR 214 T PL DRF + + + E+ ++ R L AV D AA E A R Sbjct: 155 EQQGTFPLPEAQLDRFLFKLSVGYPSSEESVQLLNRFKAAQPLDQLNAVVDVAALEEAQR 214 Query: 215 SRGTPRIAGRLLRRVRDFAEV 235 ++ LLR + + AE+ Sbjct: 215 LSAQVQVHDDLLRYIVNIAEL 235 >gi|300710268|ref|YP_003736082.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus jeotgali B3] gi|299123951|gb|ADJ14290.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus jeotgali B3] Length = 741 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 + + G +A ++K +E E D VL GPPG GKT +A+ VA E Sbjct: 460 SWNDVGGLEDAIGDIKESVEWPLTNPERFDRLGIDPPAGVLLYGPPGTGKTLMAKAVANE 519 Query: 78 LGVNFRSTSGP 88 NF S GP Sbjct: 520 TNANFISIRGP 530 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K G+ L + E + Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEESPAI 285 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 286 IFIDELDSIAPKREDV 301 >gi|298708669|emb|CBJ26156.1| putative; katanin like protein [Ectocarpus siliculosus] Length = 452 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAK-AGDLAALLTNL------EDRDV 108 +L GPPG GK+ LA+ VA E V F +S +++K G+ L+ NL +R + Sbjct: 168 ILLYGPPGTGKSYLAKAVATESDAVFFAVSSSDLVSKWQGESEKLVRNLFELAREHERSI 227 Query: 109 LFIDEIHRLS 118 +FIDE+ + Sbjct: 228 IFIDEVDSMC 237 >gi|258424453|ref|ZP_05687332.1| cell-division protein [Staphylococcus aureus A9635] gi|257845322|gb|EEV69357.1| cell-division protein [Staphylococcus aureus A9635] Length = 697 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|288941152|ref|YP_003443392.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Allochromatium vinosum DSM 180] gi|288896524|gb|ADC62360.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Allochromatium vinosum DSM 180] Length = 419 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 29/127 (22%) Query: 21 LLRPR----TLEEFT-GQVEACSNLKVFI-------EAAKARAE---ALDHVLFVGPPGL 65 L +PR L+EF GQ +A L V + E A+A+ + A ++L +GP G Sbjct: 60 LPKPREINAKLDEFVIGQEKAKKVLSVAVYNHYKRLEVAEAKEDIEIAKSNILLIGPTGS 119 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV-------LFI 111 GKT LA+ +AR L V F + +AG + + N+ D DV ++I Sbjct: 120 GKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQTGIVYI 179 Query: 112 DEIHRLS 118 DEI ++S Sbjct: 180 DEIDKIS 186 >gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii] gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii] Length = 352 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 12/71 (16%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ L++ + Q S LK + +A L H+LF GPPG GKT+ + REL Sbjct: 30 RPKKLDDVSAQDHTISVLKKTLTSAN-----LPHMLFYGPPGTGKTSTIFALTREL---- 80 Query: 83 RSTSGPVIAKA 93 GP ++K Sbjct: 81 ---YGPELSKT 88 >gi|303279767|ref|XP_003059176.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459012|gb|EEH56308.1| predicted protein [Micromonas pusilla CCMP1545] Length = 336 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S + GD L+ L D Sbjct: 65 VLLYGPPGTGKTMLAKAVATECGTTFFNVSASTVVSKWRGDSEKLVRVLFDLARHYGPST 124 Query: 109 LFIDEIHRL 117 +F+DEI L Sbjct: 125 IFLDEIDAL 133 >gi|255558698|ref|XP_002520373.1| Cell division protein ftsH, putative [Ricinus communis] gi|223540420|gb|EEF41989.1| Cell division protein ftsH, putative [Ricinus communis] Length = 701 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 275 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 305 >gi|167957160|ref|ZP_02544234.1| DNA polymerase III subunit gamma/tau [candidate division TM7 single-cell isolate TM7c] gi|332878578|ref|ZP_08446298.1| DNA polymerase III, subunit gamma and tau [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683479|gb|EGJ56356.1| DNA polymerase III, subunit gamma and tau [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 362 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 96/237 (40%), Gaps = 33/237 (13%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP++ + GQ + L IE A+AL LF GP G+GKTT A+++A+++ Sbjct: 12 RPQSFRDVVGQQAITNTLLNAIENNHL-AQAL---LFTGPRGVGKTTCARILAKKIN--- 64 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------------SIIVEEILYPA 128 SG + D A + L+ +D+I +L I++E+ + Sbjct: 65 -EQSG--VTDDNDFAFNVFELDAASNNSVDDIRKLIEQVRIPPQVGNYKVYIIDEVHMLS 121 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188 F L E P ++ I ATT + + R I I D+ Sbjct: 122 TAAFNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI-FDFKRITISDI 172 Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 + ++ A+ G+ DEA IA ++ G R A + RV F+ + T EI Sbjct: 173 REYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFSGDKITRQATSEI 229 >gi|126668409|ref|ZP_01739366.1| ftsH; cell division protein [Marinobacter sp. ELB17] gi|126627118|gb|EAZ97758.1| ftsH; cell division protein [Marinobacter sp. ELB17] Length = 613 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 +L VGPPG GKT LA+ VA E GV F S SG + G AA + +L ++ + Sbjct: 192 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARGTAPAI 251 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 252 VFIDELDAL 260 >gi|169611346|ref|XP_001799091.1| hypothetical protein SNOG_08783 [Phaeosphaeria nodorum SN15] gi|111062831|gb|EAT83951.1| hypothetical protein SNOG_08783 [Phaeosphaeria nodorum SN15] Length = 738 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 23/42 (54%) Query: 47 AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 AK A VL GPPG GKT LA+ VA E NF S GP Sbjct: 504 AKVGITAATGVLLWGPPGCGKTLLAKAVAAESKANFISVKGP 545 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L GPPG GKT +++ A ELGV F GP + +G+ + D+ + Sbjct: 203 ILLHGPPGCGKTVISRAFAAELGVPFIEILGPSVVSGMSGESEKQIREHFDKAKEVAPCL 262 Query: 109 LFIDEI 114 +FIDEI Sbjct: 263 IFIDEI 268 >gi|157872644|ref|XP_001684857.1| AAA family ATPase-like protein [Leishmania major] gi|68127927|emb|CAJ06549.1| AAA family ATPase-like protein [Leishmania major strain Friedlin] Length = 807 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL GPPG KT LA+ +A E +NF S GP V +K GD + ++ +R V Sbjct: 575 VLLYGPPGCSKTMLAKALANESHMNFISVKGPEVFSKWVGDSEKAVRDIFERARAASPCV 634 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 635 VFIDEL 640 >gi|83858430|ref|ZP_00951952.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii HTCC2633] gi|83853253|gb|EAP91105.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii HTCC2633] Length = 424 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 113 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNV 172 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 173 ERAQRGIVYIDEIDKIS 189 >gi|328870428|gb|EGG18802.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum] Length = 1173 Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT +A+ +A E +NF S GP + G+ + ++ +R V Sbjct: 915 ILLYGPPGTGKTLMAKAIATECSLNFLSVKGPELINMYIGESEKNIRDIFNRARQAKPCV 974 Query: 109 LFIDEIHRLS 118 +F DE+ L+ Sbjct: 975 IFFDELDSLA 984 >gi|315122829|ref|YP_004063318.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496231|gb|ADR52830.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 424 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|310657901|ref|YP_003935622.1| clpx-clpp ATP-dependent serine protease ATPase and specificity subunit [Clostridium sticklandii DSM 519] gi|308824679|emb|CBH20717.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Clostridium sticklandii] Length = 421 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 31/134 (23%) Query: 16 DADIS-LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD-----------HVL 58 D +I+ L +P+ ++++ GQ +A L V + R A+D ++L Sbjct: 54 DTEITGLPKPKEIKDYLDEYVIGQDDAKKTLAVAVYNHYKRIYAVDGKAKDIELQKSNIL 113 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------E 104 +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 MLGPTGSGKTLLAQTLAKMLNVPFAMADATALTEAGYVGEDVENILLKLIQASDYDISKA 173 Query: 105 DRDVLFIDEIHRLS 118 ++ +++IDEI +++ Sbjct: 174 EKGIIYIDEIDKIT 187 >gi|303328062|ref|ZP_07358501.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio sp. 3_1_syn3] gi|302861888|gb|EFL84823.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio sp. 3_1_syn3] Length = 429 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 25/122 (20%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDH--------VLFVGPPGLGKTTL 70 ++ R E GQ EA L V + R A+AL H +L VGP G GKT L Sbjct: 68 IKDRLDEYVIGQHEAKKILSVAVHNHYKRVFYADALGHDVELEKSNILLVGPSGSGKTLL 127 Query: 71 AQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE------DRDVLFIDEIHR 116 A+ +A+ L V F + +AG L LL N + + +++IDEI + Sbjct: 128 AKTLAKVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDLEAAGKGIIYIDEIDK 187 Query: 117 LS 118 +S Sbjct: 188 IS 189 >gi|302186924|ref|ZP_07263597.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv. syringae 642] Length = 805 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLAKAGVAK 554 Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230 L+++D A E R G + +L + VR Sbjct: 555 NKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589 >gi|291569654|dbj|BAI91926.1| cell division protein FtsH [Arthrospira platensis NIES-39] Length = 629 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240 >gi|254499263|ref|ZP_05111939.1| cell division control protein 48 ATPase of AAA family CDC48 subfamily [Legionella drancourtii LLAP12] gi|254351507|gb|EET10366.1| cell division control protein 48 ATPase of AAA family CDC48 subfamily [Legionella drancourtii LLAP12] Length = 708 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VG PG GKT LA+ VA E GVNF S G Sbjct: 489 ILLVGSPGCGKTLLAKAVATESGVNFLSVKG 519 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ +A E +F S SGP I G+ A L + ++ + Sbjct: 216 VLLYGPPGSGKTLIAKAIAHETDASFFSISGPEIVHKFYGESEANLRKIFEQAAQKAPSI 275 Query: 109 LFIDEI 114 +F+DEI Sbjct: 276 IFLDEI 281 >gi|237746179|ref|ZP_04576659.1| ftsh-2 peptidase, metallo peptidase, merops family m41 protein [Oxalobacter formigenes HOxBLS] gi|229377530|gb|EEO27621.1| ftsh-2 peptidase, metallo peptidase, merops family m41 protein [Oxalobacter formigenes HOxBLS] Length = 655 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 +L VGPPG GKT LA+ VA E GV F S +G + G AA + +L ++ + Sbjct: 199 ILLVGPPGTGKTLLARAVAGEAGVPFFSINGSEFVEMFVGVGAARVRDLFEQARKQAPAI 258 Query: 109 LFIDEIHRLS 118 +FIDEI L Sbjct: 259 IFIDEIDALG 268 >gi|228476204|ref|ZP_04060907.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119] gi|228269689|gb|EEK11188.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119] Length = 710 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|255071009|ref|XP_002507586.1| aaa-metalloprotease chloroplast precursor [Micromonas sp. RCC299] gi|226522861|gb|ACO68844.1| aaa-metalloprotease chloroplast precursor [Micromonas sp. RCC299] Length = 619 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 197 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 227 >gi|224284462|gb|ACN39965.1| unknown [Picea sitchensis] Length = 695 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 271 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 301 >gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus yFS275] gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus yFS275] Length = 338 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT-TLAQVVARELGVN 81 RP+ L++ + + L+ FI + + H+LF GPPG GKT T+ R G N Sbjct: 27 RPKNLDDVVAHKDIIATLEKFISTNR-----VPHMLFYGPPGTGKTSTILACANRIYGPN 81 Query: 82 FRS 84 FR+ Sbjct: 82 FRN 84 >gi|195623450|gb|ACG33555.1| FtsH6 - Zea mays FtsH protease Length = 677 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 280 >gi|195342330|ref|XP_002037754.1| GM18121 [Drosophila sechellia] gi|194132604|gb|EDW54172.1| GM18121 [Drosophila sechellia] Length = 993 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/27 (62%), Positives = 18/27 (66%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449 >gi|170076977|ref|YP_001733615.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. PCC 7002] gi|169884646|gb|ACA98359.1| ATP-dependent metalloprotease, FtsH family [Synechococcus sp. PCC 7002] Length = 628 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|158335287|ref|YP_001516459.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158305528|gb|ABW27145.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 630 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 211 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 241 >gi|57651387|ref|YP_185443.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus COL] gi|87161534|ref|YP_493198.1| putative cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151220685|ref|YP_001331507.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus str. Newman] gi|161508751|ref|YP_001574410.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142297|ref|ZP_03566790.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452808|ref|ZP_05700803.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948] gi|262049996|ref|ZP_06022855.1| cell-division protein [Staphylococcus aureus D30] gi|282925586|ref|ZP_06333239.1| cell division protease FtsH [Staphylococcus aureus A9765] gi|284023520|ref|ZP_06377918.1| putative cell division protein FtsH [Staphylococcus aureus subsp. aureus 132] gi|294850371|ref|ZP_06791104.1| cell division protease FtsH [Staphylococcus aureus A9754] gi|304380529|ref|ZP_07363205.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57285573|gb|AAW37667.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus COL] gi|87127508|gb|ABD22022.1| putative cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150373485|dbj|BAF66745.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus str. Newman] gi|160367560|gb|ABX28531.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859494|gb|EEV82347.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948] gi|259161931|gb|EEW46514.1| cell-division protein [Staphylococcus aureus D30] gi|269940082|emb|CBI48458.1| putative cell division protein [Staphylococcus aureus subsp. aureus TW20] gi|282592490|gb|EFB97502.1| cell division protease FtsH [Staphylococcus aureus A9765] gi|294822795|gb|EFG39231.1| cell division protease FtsH [Staphylococcus aureus A9754] gi|304340933|gb|EFM06857.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196194|gb|EFU26550.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus CGS01] gi|320139402|gb|EFW31280.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus MRSA131] gi|320144179|gb|EFW35947.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus MRSA177] gi|329313230|gb|AEB87643.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus T0131] Length = 697 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|28574716|ref|NP_787969.1| cutlet [Drosophila melanogaster] gi|28380272|gb|AAN10380.2| cutlet [Drosophila melanogaster] Length = 993 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/27 (62%), Positives = 18/27 (66%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449 >gi|118581016|ref|YP_902266.1| ATP-dependent protease La [Pelobacter propionicus DSM 2379] gi|118503726|gb|ABL00209.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16 [Pelobacter propionicus DSM 2379] Length = 823 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 90/227 (39%), Gaps = 49/227 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L + +AR + F R + G V +A G + L R Sbjct: 364 LCFVGPPGVGKTSLGKSIARAMNRKFVRISLGGVRDEAEIRGHRRTYIGALPGRIIQGMK 423 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V +DE+ +L S + E+L P D + + NLS Sbjct: 424 QAGTNNPVFMLDELDKLGYDYKGDPSSALLEVLDPEQNHSFSDHYINQ-------PYNLS 476 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203 IA ++ + + L+DR + + E E L + + + G K +A Sbjct: 477 NVMFIATANQIDPVPSALRDRMEVITLSGYTEEEKLEISRRFLVPRQMKENGLKEKNIAF 536 Query: 204 TDEAACEIAMRS------RGTPRIAGRLLRRV-RDFAEVAHAKTITR 243 DEA EI + R R G + R+V R AE K ITR Sbjct: 537 DDEAIAEIIAKYTREAGLRNLEREIGTVCRKVARKVAE--GQKRITR 581 >gi|114567578|ref|YP_754732.1| ATPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338513|gb|ABI69361.1| ATPases of the AAA+ class-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 365 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 52/219 (23%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFR------STSGPVIAKAGDLAALLTNLEDR 106 H+ F G PG GKTT+A++V R ++G+ + S + + G A + + ++ Sbjct: 144 HLAFTGKPGTGKTTVARIVGRVYKQIGLLTKGHFIEVSRTDLIAGYQGQTALKVRKVIEK 203 Query: 107 ---DVLFIDEIHRLS-----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 VLFIDE + ++ + E L A+ED++ DL+V Sbjct: 204 AKGGVLFIDEAYSITENDHSDSYGRECLTE--LTKALEDYRDDLVV-------------- 247 Query: 153 RFTLIAATT---RVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208 ++A T +NP L+ RF I + Y ++L+ I+ K +++EA Sbjct: 248 ---IVAGYTEPMNKFFESNPGLKSRFNTFIEFDDYTSDELEEILTMMCKNNDYILSEEAR 304 Query: 209 CEIA------MRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 I + ++ GRL+R + D + HAK + Sbjct: 305 SRIKQALNNHVAAKDDHFANGRLVRNIYDDIVMNHAKRV 343 >gi|71756209|ref|XP_829019.1| replication factor C subunit 4 [Trypanosoma brucei TREU927] gi|70834405|gb|EAN79907.1| replication factor C, subunit 4, putative [Trypanosoma brucei] gi|261334959|emb|CBH17953.1| replication factor C, subunit 4, putative [Trypanosoma brucei gambiense DAL972] Length = 341 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP ++E+ G +A + L+V AR L ++L GPPG GKTT +AR L Sbjct: 13 RPMSMEDIVGNADAVARLQVI-----AREGNLPNLLLCGPPGTGKTTSMLCLARSL 63 >gi|23014985|ref|ZP_00054777.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Magnetospirillum magnetotacticum MS-1] Length = 422 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 111 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAE 170 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 171 YNVERAQRGIVYIDEVDKIS 190 >gi|330914443|ref|XP_003296642.1| hypothetical protein PTT_06788 [Pyrenophora teres f. teres 0-1] gi|311331120|gb|EFQ95258.1| hypothetical protein PTT_06788 [Pyrenophora teres f. teres 0-1] Length = 925 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 33/163 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA----------GDLAALLTNLED 105 +L VGPPG+GKT+LA+ VA LG F S G V +A + L+ N Sbjct: 478 LLLVGPPGVGKTSLAKSVATALGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGLIVNGLK 537 Query: 106 R-----DVLFIDEIHRLSIIVE---------EILYPAMEDFQLDLMVGEGPSARSVKINL 151 + V +DEI +L ++ E+L P D V ++ I+L Sbjct: 538 KVGVANPVFLLDEIDKLGMMNHNGDPGAAMLEVLDPEQNHTFTDHYV-------NIPIDL 590 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 S+ IA + + PL DR I+L+ Y + + I R Sbjct: 591 SKVLFIATANSLDTIPPPLLDRMET-IQLSGYTTLEKRHIAAR 632 >gi|298693841|gb|ADI97063.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus ED133] gi|323438743|gb|EGA96483.1| cell division protein [Staphylococcus aureus O11] gi|323442045|gb|EGA99680.1| cell division protein [Staphylococcus aureus O46] Length = 697 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|297848920|ref|XP_002892341.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338183|gb|EFH68600.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 685 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 256 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 286 >gi|292656819|ref|YP_003536716.1| cell division control protein 48 [Haloferax volcanii DS2] gi|291371169|gb|ADE03396.1| cell division control protein 48 [Haloferax volcanii DS2] Length = 754 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ +F + SGP I Sbjct: 227 VLLHGPPGTGKTLIAKAVANEIDASFHTISGPEI 260 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A VL GPPG GKT LA+ VA E NF S GP Sbjct: 495 DAAKGVLMYGPPGTGKTLLAKAVANEAESNFISIKGP 531 >gi|282915829|ref|ZP_06323597.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus D139] gi|282320320|gb|EFB50662.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus D139] Length = 697 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|297545179|ref|YP_003677481.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842954|gb|ADH61470.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 510 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 16/121 (13%) Query: 10 RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61 N+++ D S + T ++ G E LKV I+ K A+ +LF G Sbjct: 65 NNITEAKEDTSHRKNNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYG 124 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDE 113 PPG GKT LA +A E F S SG V A + AL + ++FIDE Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSTPSIIFIDE 184 Query: 114 I 114 I Sbjct: 185 I 185 >gi|229829756|ref|ZP_04455825.1| hypothetical protein GCWU000342_01853 [Shuttleworthia satelles DSM 14600] gi|229791745|gb|EEP27859.1| hypothetical protein GCWU000342_01853 [Shuttleworthia satelles DSM 14600] Length = 633 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 V+ VGPPG GKT LA+ VA E GV F S SG Sbjct: 212 VILVGPPGTGKTLLAKAVAGEAGVPFFSISG 242 >gi|282600857|ref|ZP_05979925.2| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM 15176] gi|282571161|gb|EFB76696.1| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM 15176] Length = 681 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 15/107 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAE------ALDH-VLFVGPPGLGKTTLAQVVA 75 R T + G E + L+ +E KA + + H VL VGPPG GKT LA+ A Sbjct: 184 RKATFADVAGADEEKAELQEVVEFLKAPGKFNSLGARIPHGVLLVGPPGTGKTLLARACA 243 Query: 76 RELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFIDEI 114 E GV F + SG V G A+ + +L ++ ++FIDEI Sbjct: 244 GEAGVPFYAISGSDFVEMYVGVGASRVRDLFEKAKKTMPSIVFIDEI 290 >gi|219117131|ref|XP_002179360.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409251|gb|EEC49183.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 485 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 6/53 (11%) Query: 30 FTGQV---EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQV EAC + I+A K AL L VGPPG GKT LA +A+ELG Sbjct: 55 LVGQVPAREACGLVVDLIQAQKLAGRAL---LLVGPPGTGKTALALAMAKELG 104 >gi|167574957|ref|ZP_02367831.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia oklahomensis C6786] Length = 657 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 266 IFIDEL 271 >gi|149178490|ref|ZP_01857079.1| hypothetical protein PM8797T_19697 [Planctomyces maris DSM 8797] gi|148842703|gb|EDL57077.1| hypothetical protein PM8797T_19697 [Planctomyces maris DSM 8797] Length = 1776 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAK-ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 S +R R L+E V + K EA + R + + ++ V PPG GKTTL + +A L Sbjct: 1240 SFVRNRLLDEVYLPVIGDNLAKQMGEAGENKRTDRMGLLMLVSPPGYGKTTLMEYIANRL 1299 Query: 79 GVNFRSTSGPVIA 91 G+ F +GP + Sbjct: 1300 GIIFMKINGPALG 1312 >gi|156095797|ref|XP_001613933.1| cell division protein FtsH [Plasmodium vivax SaI-1] gi|148802807|gb|EDL44206.1| cell division protein FtsH, putative [Plasmodium vivax] Length = 896 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG GKT LA+ VA E V + TSGP Sbjct: 197 VLLVGPPGSGKTMLARAVATEANVPYIYTSGP 228 >gi|6692685|gb|AAF24819.1|AC007592_12 F12K11.22 [Arabidopsis thaliana] Length = 662 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 256 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 286 >gi|39938720|ref|NP_950486.1| hypothetical protein PAM_234 [Onion yellows phytoplasma OY-M] gi|39721829|dbj|BAD04319.1| hypothetical protein [Onion yellows phytoplasma OY-M] Length = 224 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 16/193 (8%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 +L GPPG GKT L + +A E +F + SG + GD A + +L ++ + Sbjct: 35 ILLYGPPGTGKTLLVKALAGESDSSFYAFSGTDFLQRIHGDGAKKVRDLFEKTKTHKTSI 94 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 +FIDEI I + E L +G ++ N + +IAAT RV L + Sbjct: 95 IFIDEIDSFGIARNDFSQKEKEITTELLNQMDGIKSKD---NENNVIVIAATNRVESLDS 151 Query: 169 PL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 L RF + + +++ K I++ AK +A D ++A ++G ++G L Sbjct: 152 ALLRPGRFDYVVNVLLPDLKARKAILKLCAKGKQIADEDINLEQLAQETQG---LSGAQL 208 Query: 227 RRVRDFAEVAHAK 239 + + + A + A+ Sbjct: 209 KAILNEASMLQAE 221 >gi|113477982|ref|YP_724043.1| FtsH peptidase [Trichodesmium erythraeum IMS101] gi|110169030|gb|ABG53570.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Trichodesmium erythraeum IMS101] Length = 628 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|328779626|ref|XP_393943.4| PREDICTED: ATPase WRNIP1-like [Apis mellifera] Length = 426 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 14/149 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV---VAREL 78 +RP ++ GQ E ++ + + ++F GPPG GKT+L + +++E+ Sbjct: 1 MRPACFHDYIGQ-EKVVGSNTILQQLLTKGH-IPSMIFWGPPGCGKTSLTNIISKISKEM 58 Query: 79 G------VNFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRLSIIVEEILYPAME- 130 +N +TS V + T + ++ ++ +D+IHR + + ++I P +E Sbjct: 59 HGEKVNIINLSATSSGVSNIKNIINKTKTESKFNQIIVIMDKIHRFNKLQQDIFLPHVET 118 Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIA 158 F L E PS LSR + A Sbjct: 119 GTFTLIGTTTENPSYSLNSALLSRCRIFA 147 >gi|325125153|gb|ADY84483.1| Cell division protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 737 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F SG V A + L TN + + Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFYISGSDFVEMFVGVGASRVRDLFTNAKKNAPSI 284 Query: 109 LFIDEI 114 +FIDEI Sbjct: 285 IFIDEI 290 >gi|322493640|emb|CBZ28930.1| AAA family ATPase-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 786 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL GPPG KT LA+ +A E +NF S GP V +K GD + ++ +R V Sbjct: 554 VLLYGPPGCSKTMLAKALANESHMNFISVKGPEVFSKWVGDSEKAVRDIFERARAASPCV 613 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 614 VFIDEL 619 >gi|302750402|gb|ADL64579.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 667 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 171 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 230 Query: 109 LFIDEI 114 +FIDEI Sbjct: 231 IFIDEI 236 >gi|296118973|ref|ZP_06837546.1| cell division protein FtsH [Corynebacterium ammoniagenes DSM 20306] gi|295968071|gb|EFG81323.1| cell division protein FtsH [Corynebacterium ammoniagenes DSM 20306] Length = 853 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNL---KVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA L K F+E A+ VL GPPG GKT LA+ VA E Sbjct: 165 TFEDVAGADEAVDELQEIKDFLEDPSRYHELGAKIPRGVLLYGPPGTGKTLLARAVAGEA 224 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 225 GVPFYSISG 233 >gi|270012364|gb|EFA08812.1| hypothetical protein TcasGA2_TC006507 [Tribolium castaneum] Length = 821 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 15/96 (15%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD---LAALLTNLEDRDVL--FID 112 L GPPGLGKTTLA +VAR G N V A D A T LE+ + +D Sbjct: 296 LLCGPPGLGKTTLAHMVARHAGYNV------VEVNASDDRSCEAFKTALENATQMRSVVD 349 Query: 113 EIHRLSIIV-EEI--LYPAMEDFQLDLMVGEGPSAR 145 + R + +V +EI P+ D+ + + G GPS R Sbjct: 350 QERRPNCLVFDEIDGAPPSSIDYLVKFVQG-GPSGR 384 >gi|300023468|ref|YP_003756079.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Hyphomicrobium denitrificans ATCC 51888] gi|299525289|gb|ADJ23758.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hyphomicrobium denitrificans ATCC 51888] Length = 415 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 105 AKSNILLVGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 164 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 165 YNVERAQRGIVYIDEVDKIS 184 >gi|213966429|ref|ZP_03394606.1| DNA polymerase III subunit gamma/tau [Corynebacterium amycolatum SK46] gi|213950922|gb|EEB62327.1| DNA polymerase III subunit gamma/tau [Corynebacterium amycolatum SK46] Length = 944 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEA--AKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78 RP + E GQ L +E+ A+ R ++H LF GP G GKT+ A+++AR L Sbjct: 7 YRPASFAEVVGQRHVTDPLSAALESRDAQGRPNRINHAYLFSGPRGCGKTSSARIMARSL 66 Query: 79 GVNFRSTSGPVIAKAGDLAAL 99 GP G A+ Sbjct: 67 NC----AEGPTATPCGQCASC 83 >gi|210613790|ref|ZP_03289904.1| hypothetical protein CLONEX_02115 [Clostridium nexile DSM 1787] gi|210150999|gb|EEA82007.1| hypothetical protein CLONEX_02115 [Clostridium nexile DSM 1787] Length = 605 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F + SG Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 223 >gi|226498812|ref|NP_001149810.1| katanin p60 ATPase-containing subunit [Zea mays] gi|195634807|gb|ACG36872.1| katanin p60 ATPase-containing subunit [Zea mays] Length = 518 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 270 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 329 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 330 IFIDEIDSL 338 >gi|209523843|ref|ZP_03272396.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] gi|209495875|gb|EDZ96177.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] Length = 629 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240 >gi|195576414|ref|XP_002078071.1| GD22729 [Drosophila simulans] gi|194190080|gb|EDX03656.1| GD22729 [Drosophila simulans] Length = 978 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/27 (62%), Positives = 18/27 (66%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449 >gi|82750218|ref|YP_415959.1| cell division protein [Staphylococcus aureus RF122] gi|82655749|emb|CAI80148.1| cell division protein [Staphylococcus aureus RF122] Length = 697 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFLSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|332712424|ref|ZP_08432351.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] gi|332348898|gb|EGJ28511.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] Length = 510 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 91 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 121 >gi|323703641|ref|ZP_08115284.1| Sigma 54 interacting domain protein [Desulfotomaculum nigrificans DSM 574] gi|323531413|gb|EGB21309.1| Sigma 54 interacting domain protein [Desulfotomaculum nigrificans DSM 574] Length = 571 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 12/97 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ +E GQ E +L+ + + HVL GPPG+GKT A++V E Sbjct: 68 RPKNFDEIIGQEEGLRSLRAALCGPNPQ-----HVLIYGPPGVGKTAAARLVLEEAK--- 119 Query: 83 RSTSGPVIAKAG--DLAALLTNLEDRDVL--FIDEIH 115 +S S P KA +L A ++R + I +H Sbjct: 120 KSPSSPFKEKAKFIELDATTARFDERGIADPLIGSVH 156 >gi|312872227|ref|ZP_07732300.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2062A-h1] gi|311092311|gb|EFQ50682.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2062A-h1] Length = 587 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 15 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 69 Query: 82 FRSTSGPVIAKAGDLAA 98 P + LAA Sbjct: 70 DSKDGEPCNQCSNCLAA 86 >gi|307261755|ref|ZP_07543421.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868573|gb|EFN00384.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 419 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 118 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDA 177 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 178 EQAERGIVFIDEIDKIT 194 >gi|301618395|ref|XP_002938599.1| PREDICTED: lon protease homolog, mitochondrial-like [Xenopus (Silurana) tropicalis] Length = 970 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 32/187 (17%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 SQE+ D+ E+ G + + FI ++ R +L F GPPG+GKT++A Sbjct: 497 SQENLDLRRAEEVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 556 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G V A G + L + + ++ IDE+ Sbjct: 557 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 616 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 +L S + E+L P LD + V ++LS+ I + Sbjct: 617 KLGRGYQGDPSSALLELLDPEQNSNFLDHYL-------DVPVDLSKVLFICTANVTETIP 669 Query: 168 NPLQDRF 174 PL+DR Sbjct: 670 EPLRDRM 676 >gi|302822268|ref|XP_002992793.1| hypothetical protein SELMODRAFT_135916 [Selaginella moellendorffii] gi|300139438|gb|EFJ06179.1| hypothetical protein SELMODRAFT_135916 [Selaginella moellendorffii] Length = 518 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 273 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 332 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 333 IFIDEIDSL 341 >gi|284051382|ref|ZP_06381592.1| FtsH peptidase [Arthrospira platensis str. Paraca] Length = 634 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240 >gi|261415784|ref|YP_003249467.1| ATP-dependent protease La [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372240|gb|ACX74985.1| ATP-dependent protease La [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327636|gb|ADL26837.1| endopeptidase La [Fibrobacter succinogenes subsp. succinogenes S85] Length = 789 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 43/219 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + VGPPG+GKTTL + +A + NF R T G V +A G + + R Sbjct: 351 LCLVGPPGVGKTTLVESIATAMQRNFVRITLGGVRDEAEIRGHRRTYIGAMPGRFIHALR 410 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAM-EDFQLDLMVGEGPSARSVKINL 151 V+ +DEI ++ + + E+L P DF M V ++L Sbjct: 411 RAKCMNPVILLDEIDKMASDFRGDPASAMLEVLDPEQNHDFTDHFM--------EVGLDL 462 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRL-NFYEIEDL----KTIVQRGAKLTGLAVTDE 206 SR IA G + L+DR + +RL +Y E L K ++ R + TG+ + ++ Sbjct: 463 SRVLFIATANSEGEIPEALRDRMEV-VRLPGYYPHEKLQIAGKYLLPRICERTGVKLGEQ 521 Query: 207 AACEIAMRS---RGTPRIAG-RLLRRVRDFAEVAHAKTI 241 + M + RG R AG R L RV + A AK I Sbjct: 522 VSFSDEMINAVMRGWTREAGVRELERVLESAVRHRAKDI 560 >gi|255722075|ref|XP_002545972.1| ATPase family AAA domain-containing protein 1-A [Candida tropicalis MYA-3404] gi|240136461|gb|EER36014.1| ATPase family AAA domain-containing protein 1-A [Candida tropicalis MYA-3404] Length = 364 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108 VLF GPPG GKT LA+ +A+E G F S I K D L N + Sbjct: 137 VLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSSIMDKWYGESNKITDAIFSLANKLQPCI 196 Query: 109 LFIDEI 114 +FIDEI Sbjct: 197 IFIDEI 202 >gi|295658083|ref|XP_002789604.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb01] gi|226283157|gb|EEH38723.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb01] Length = 404 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP +LE+ +G + + FI++ + L H+L GPPG GKT+ +AR + Sbjct: 52 RPNSLEDVSGHHDVIGTINTFIDSNR-----LPHLLLYGPPGTGKTSTILALARRI 102 >gi|218961380|ref|YP_001741155.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Candidatus Cloacamonas acidaminovorans] gi|167730037|emb|CAO80949.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Candidatus Cloacamonas acidaminovorans] Length = 415 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT +AQ +AR L V F + + +AG D+ +L L Sbjct: 106 NILMIGPTGSGKTLIAQTLARFLQVPFAISDATTLTEAGYVGEDVENILVRLLQNANYDV 165 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 166 ARAERGIVYIDEIDKIS 182 >gi|159028508|emb|CAO87315.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 628 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|66047171|ref|YP_237012.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv. syringae B728a] gi|63257878|gb|AAY38974.1| Peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv. syringae B728a] gi|330973039|gb|EGH73105.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv. aceris str. M302273PT] Length = 805 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 53/215 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198 ++LS+ + + + PL DR + IRL+ Y E+ I +R G Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLAKAGVAK 554 Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230 L+++D A E R G + +L + VR Sbjct: 555 NKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589 >gi|55981080|ref|YP_144377.1| alternative ATP-dependent protease La [Thermus thermophilus HB8] gi|55772493|dbj|BAD70934.1| alternative ATP-dependent protease La (Lon protease) [Thermus thermophilus HB8] Length = 804 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 84/227 (37%), Gaps = 51/227 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100 +LFVGPPG+GKT++A+ +A LG + S + D + L Sbjct: 358 LLFVGPPGVGKTSIAKSIAEALGRKYVRVSLGGVRDESDIRGHRRTYIGAMPGRIIQGLR 417 Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V +DE+ +L I + E+L PA +D +G V +LS Sbjct: 418 QAGTKNPVFLLDEVDKLGISYQGDPAAALLEVLDPAQNKEFVDHYLG-------VPFDLS 470 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAVTDEA 207 I + PL DR PI Y E E L + ++ R K GL Sbjct: 471 EVMFICTANFPQNIPAPLYDRME-PIEFTSYTEQEKLEIAKRYLLPRQLKENGLEPEQVV 529 Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 E A L R + + A + + REI ALLR A Sbjct: 530 VTEAA------------LTRLITHYTREAGVRQLEREI--GALLRKA 562 >gi|52075839|dbj|BAD45447.1| putative chloroplast protease [Oryza sativa Japonica Group] Length = 472 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 46 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 76 >gi|115439215|ref|NP_001043887.1| Os01g0683100 [Oryza sativa Japonica Group] gi|19386661|dbj|BAB86043.1| putative katanin [Oryza sativa Japonica Group] gi|21644706|dbj|BAC01262.1| putative katanin [Oryza sativa Japonica Group] gi|32966063|gb|AAP92128.1| putative ATPase ATP1 [Oryza sativa] gi|113533418|dbj|BAF05801.1| Os01g0683100 [Oryza sativa Japonica Group] gi|125571595|gb|EAZ13110.1| hypothetical protein OsJ_03030 [Oryza sativa Japonica Group] gi|215697345|dbj|BAG91339.1| unnamed protein product [Oryza sativa Japonica Group] Length = 519 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 271 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARFYAPST 330 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 331 IFIDEIDSL 339 >gi|260062280|ref|YP_003195360.1| methanol dehydrogenase regulator [Robiginitalea biformata HTCC2501] gi|88783842|gb|EAR15013.1| methanol dehydrogenase regulator [Robiginitalea biformata HTCC2501] Length = 317 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 21/153 (13%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFI---- 111 H L +G PGL KT + +A+ LG++F+ D+ ++R+ +F+ Sbjct: 44 HSLLIGVPGLAKTLMVNTIAQTLGLDFKRIQFTPDLMPSDILGSEVLDQNRNFIFVKGPV 103 Query: 112 -------DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 DEI+R + L AM++ + + + + K++ F L Sbjct: 104 FANIILADEINRTPPKTQAALLEAMQERAVTI------TGKQYKLDQPYFVLATQNPIEQ 157 Query: 165 LLTNPLQ----DRFGIPIRLNFYEIEDLKTIVQ 193 T PL DRF I L + +E+ T+VQ Sbjct: 158 EGTYPLPEAQLDRFMFAIELKYPSVEEEITVVQ 190 >gi|332026996|gb|EGI67092.1| Katanin p60 ATPase-containing subunit A-like 1 [Acromyrmex echinatior] Length = 507 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 263 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 322 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 323 IFIDEIDSL 331 >gi|325663695|ref|ZP_08152099.1| hypothetical protein HMPREF0490_02840 [Lachnospiraceae bacterium 4_1_37FAA] gi|331087217|ref|ZP_08336287.1| hypothetical protein HMPREF0987_02590 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470188|gb|EGC73421.1| hypothetical protein HMPREF0490_02840 [Lachnospiraceae bacterium 4_1_37FAA] gi|330408903|gb|EGG88364.1| hypothetical protein HMPREF0987_02590 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 609 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F + SG Sbjct: 201 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 231 >gi|323449509|gb|EGB05397.1| hypothetical protein AURANDRAFT_1128 [Aureococcus anophagefferens] Length = 492 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 13/70 (18%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD 107 + R H LF GPPG GKT A+ +A G+++ +A GD+A L RD Sbjct: 256 RKRGAVFRHCLFYGPPGTGKTLFAKKLAANAGMDY------AVASGGDVAPL-----GRD 304 Query: 108 VLFIDEIHRL 117 + E+H+L Sbjct: 305 A--VTEMHKL 312 >gi|307215082|gb|EFN89889.1| Katanin p60 ATPase-containing subunit A1 [Harpegnathos saltator] Length = 504 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLED---RDV 108 VL VGPPG GKT LA+ VA E G F + S + ++ L LL + Sbjct: 260 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 319 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 320 IFIDEIDSL 328 >gi|307250530|ref|ZP_07532474.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857423|gb|EFM89535.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 419 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 118 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDA 177 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 178 EQAERGIVFIDEIDKIT 194 >gi|294672833|ref|YP_003573449.1| ATP-dependent metalloprotease FtsH [Prevotella ruminicola 23] gi|294473889|gb|ADE83278.1| putative ATP-dependent metalloprotease FtsH [Prevotella ruminicola 23] Length = 673 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E GV F S SG V A + L + + ++ Sbjct: 222 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFQQAKTKSPCII 281 Query: 110 FIDEI 114 FIDEI Sbjct: 282 FIDEI 286 >gi|290890959|ref|ZP_06554023.1| hypothetical protein AWRIB429_1413 [Oenococcus oeni AWRIB429] gi|290479358|gb|EFD88018.1| hypothetical protein AWRIB429_1413 [Oenococcus oeni AWRIB429] Length = 594 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 23/114 (20%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL-GV 80 RPRT + GQ L+ +++ K + H LF GP G GKT++A++ ARE+ G+ Sbjct: 10 RPRTFSDLVGQTVIAQTLENALKSNK-----VGHAYLFAGPRGTGKTSVAKIFAREIEGI 64 Query: 81 ---NFRSTSGPVI---AKAGDLAALLTNLEDR----------DVLFIDEIHRLS 118 N R + +I A + + + NL D + IDE+H LS Sbjct: 65 PDDNNRESFSDIIEIDAASNNGVDEIRNLRDAANYAPIEYQFKIYIIDEVHMLS 118 >gi|242371659|ref|ZP_04817233.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1] gi|242350608|gb|EES42209.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1] Length = 709 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|238922947|ref|YP_002936460.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656] gi|238874619|gb|ACR74326.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656] Length = 609 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F + SG Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 223 >gi|224128696|ref|XP_002320396.1| predicted protein [Populus trichocarpa] gi|222861169|gb|EEE98711.1| predicted protein [Populus trichocarpa] Length = 684 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 >gi|220909618|ref|YP_002484929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] gi|219866229|gb|ACL46568.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] Length = 632 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 213 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 243 >gi|239917501|ref|YP_002957059.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus luteus NCTC 2665] gi|259491263|sp|C5CAX2|CLPX_MICLC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|239838708|gb|ACS30505.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus luteus NCTC 2665] Length = 432 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108 ++L VGP G GKT LAQ +AR L V F + +AG + + N+ D DV Sbjct: 125 NILMVGPTGSGKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAADYDV 184 Query: 109 -------LFIDEIHRLS 118 ++IDEI ++S Sbjct: 185 KKAEQGIIYIDEIDKIS 201 >gi|187830070|ref|NP_001120720.1| LOC100147734 [Zea mays] gi|166093207|gb|ABY82589.1| filamentation temperature-sensitive H 2A [Zea mays] gi|166093211|gb|ABY82591.1| filamentation temperature-sensitive H 2A [Zea mays] Length = 677 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 280 >gi|167762257|ref|ZP_02434384.1| hypothetical protein BACSTE_00610 [Bacteroides stercoris ATCC 43183] gi|167699900|gb|EDS16479.1| hypothetical protein BACSTE_00610 [Bacteroides stercoris ATCC 43183] Length = 594 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRS------TSGPVIAKAGDLAALLTNLEDR--DV 108 +L GPPG GKT A+ A E+G NF S V A ++A + E+ V Sbjct: 357 MLLYGPPGCGKTFFAKHFAEEVGFNFMCITPATLKSRYVNATQENIAKMFKEAEENAPTV 416 Query: 109 LFIDEIHRL 117 +FIDE++ L Sbjct: 417 IFIDEMNEL 425 >gi|150865535|ref|XP_001384792.2| AAA ATPase [Scheffersomyces stipitis CBS 6054] gi|149386791|gb|ABN66763.2| AAA ATPase [Scheffersomyces stipitis CBS 6054] Length = 832 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKTT+A +A EL V F + S P I +G+ L + D + Sbjct: 229 VLLYGPPGCGKTTIANALAGELQVPFINISAPSIVSGMSGESEKKLREIFDEAKTLAPCI 288 Query: 109 LFIDEIHRLS 118 +F+DEI ++ Sbjct: 289 IFMDEIDAIT 298 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 560 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 591 >gi|219847456|ref|YP_002461889.1| AAA ATPase central domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219541715|gb|ACL23453.1| AAA ATPase central domain protein [Chloroflexus aggregans DSM 9485] Length = 657 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 12/70 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA----GDLAALLTNLEDRD----- 107 +L +GPPG GK+ LAQ ++ E GV F S P + A G++ + + R Sbjct: 152 ILLIGPPGTGKSYLAQAISTEAGVPFGYLSAPSLLSAWMGMGNIKVMNLYRKARRLAREY 211 Query: 108 ---VLFIDEI 114 +LFIDEI Sbjct: 212 GACILFIDEI 221 >gi|308812909|ref|XP_003083761.1| FtsH protease, putative (ISS) [Ostreococcus tauri] gi|116055643|emb|CAL57728.1| FtsH protease, putative (ISS) [Ostreococcus tauri] Length = 610 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ VA E GV F TSG Sbjct: 215 LLLVGPPGTGKTMLAKAVAGEAGVPFFYTSG 245 >gi|115374427|ref|ZP_01461709.1| peptidase M41, FtsH [Stigmatella aurantiaca DW4/3-1] gi|115368519|gb|EAU67472.1| peptidase M41, FtsH [Stigmatella aurantiaca DW4/3-1] Length = 671 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 225 VLLVGPPGTGKTLLARAVAGEAGVPFFSLSG 255 >gi|114707245|ref|ZP_01440143.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi HTCC2506] gi|114537441|gb|EAU40567.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi HTCC2506] Length = 422 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|84468286|dbj|BAE71226.1| putative zinc dependent protease [Trifolium pratense] Length = 692 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 266 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 296 >gi|70727499|ref|YP_254415.1| cell-division protein [Staphylococcus haemolyticus JCSC1435] gi|123748601|sp|Q4L3G8|FTSH_STAHJ RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|68448225|dbj|BAE05809.1| cell-division protein [Staphylococcus haemolyticus JCSC1435] Length = 727 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|34557847|ref|NP_907662.1| ATP-dependent Zn protease [Wolinella succinogenes DSM 1740] gi|34483565|emb|CAE10562.1| ATPASE EC 3.4.24.-ATP-dependent Zn proteases [Wolinella succinogenes] Length = 579 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL +GPPG+GKT +A+ VA E GV F SG A+ G A + +L R + Sbjct: 217 VLLMGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFAQIYVGMGAKRVRDLFMRAKLSAPSI 276 Query: 109 LFIDEI 114 +FIDEI Sbjct: 277 IFIDEI 282 >gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818] Length = 345 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPRT + Q + + L+ I A + H+LF GPPG GKT+ ++REL Sbjct: 30 RPRTTADVAHQSQVIATLRATISGAD-----MPHLLFYGPPGTGKTSTILALSREL 80 >gi|320161491|ref|YP_004174715.1| cell division protein FtsH [Anaerolinea thermophila UNI-1] gi|319995344|dbj|BAJ64115.1| cell division protein FtsH [Anaerolinea thermophila UNI-1] Length = 623 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA LK +E + + + VL VGPPG GKT +A+ V+ E Sbjct: 162 TFDDVAGVDEAKEELKEVVEFLREPQKFIQLGARIPKGVLLVGPPGTGKTLIAKAVSGEA 221 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S SG + G A+ + +L D+ ++F+DEI Sbjct: 222 GVPFFSISGSEFVEMFVGVGASRVRDLFDQARRHSPCIVFVDEI 265 >gi|302760667|ref|XP_002963756.1| hypothetical protein SELMODRAFT_141788 [Selaginella moellendorffii] gi|300169024|gb|EFJ35627.1| hypothetical protein SELMODRAFT_141788 [Selaginella moellendorffii] Length = 879 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 35/214 (16%) Query: 8 LSRNVSQEDADISLL--RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPG 64 L +S E+ ++ L+ + R E G + + ++ K + +A VL FVGPPG Sbjct: 342 LPWQISSEERELDLVAAKERLDSEHYGLGKVKKRIIEYLAVRKLKPDARGPVLCFVGPPG 401 Query: 65 LGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------------DV 108 +GKT+LA +A LG F R + G V +A G + ++ R V Sbjct: 402 VGKTSLASSIAGALGRLFIRISLGGVKDEADIRGHRRTYIGSMPGRLIEGIKRVGVNNPV 461 Query: 109 LFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160 + +DEI + V E+L P D + +V +LS+ +A Sbjct: 462 MLLDEIDKTGTDVRGDPASALLEVLDPEQNRTFNDHYL-------NVPFDLSKVVFVATA 514 Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 R+ ++ PL DR + I L Y E+ I R Sbjct: 515 NRIQPISPPLLDRMEV-IELPGYTSEEKLCIAMR 547 >gi|302794532|ref|XP_002979030.1| hypothetical protein SELMODRAFT_152929 [Selaginella moellendorffii] gi|300153348|gb|EFJ19987.1| hypothetical protein SELMODRAFT_152929 [Selaginella moellendorffii] Length = 595 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 169 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 199 >gi|302806390|ref|XP_002984945.1| hypothetical protein SELMODRAFT_156952 [Selaginella moellendorffii] gi|300147531|gb|EFJ14195.1| hypothetical protein SELMODRAFT_156952 [Selaginella moellendorffii] Length = 595 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 169 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 199 >gi|284054936|ref|ZP_06385146.1| ATP-dependent metalloprotease FtsH [Arthrospira platensis str. Paraca] Length = 121 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 10 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 40 >gi|290961843|ref|YP_003493025.1| shikimate kinase I [Streptomyces scabiei 87.22] gi|260651369|emb|CBG74491.1| shikimate kinase I [Streptomyces scabiei 87.22] Length = 172 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 V+ VGP G+GK+T+ Q++A LGV +R T ++A+ G Sbjct: 7 VVLVGPMGVGKSTVGQLLAERLGVAYRDTDDDIVAEQG 44 >gi|254573476|ref|XP_002493847.1| Putative ATPase of the AAA family [Pichia pastoris GS115] gi|238033646|emb|CAY71668.1| Putative ATPase of the AAA family [Pichia pastoris GS115] gi|328354331|emb|CCA40728.1| Uncharacterized AAA domain-containing protein C16E9.10c [Pichia pastoris CBS 7435] Length = 818 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 556 VLMWGPPGCGKTLLAKAVANESKANFISIKGP 587 Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKTT+A +A EL V F S S P + Sbjct: 232 VLLHGPPGCGKTTIANALAGELQVPFISLSAPSV 265 >gi|241060074|ref|XP_002407985.1| ATP-dependent protease PIM1/LON, putative [Ixodes scapularis] gi|215492328|gb|EEC01969.1| ATP-dependent protease PIM1/LON, putative [Ixodes scapularis] Length = 857 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 33/209 (15%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTT 69 S+E+ D++ + E+ G + + FI ++ + +L F GPPG+GKT+ Sbjct: 379 KTSEENLDLARAKEVLEEDHYGMDDVKKRILEFIAVSQLKGTTQGKMLCFYGPPGVGKTS 438 Query: 70 LAQVVARELGVN-FRSTSG--------------PVIAKAGDLAALLTNLEDRD-VLFIDE 113 +A+ +AR L FR + G V A G L L + + ++ IDE Sbjct: 439 IARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDE 498 Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 + ++ S + E+L P LD + V ++LS+ I Sbjct: 499 VDKIGRGYQGDPSSALLEVLDPEQNANFLDHYL-------DVNVDLSKVLFICTANVTDT 551 Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + PL+DR + I ++ Y E+ I +R Sbjct: 552 IPEPLKDRLEM-IEVSGYVAEEKMAIAER 579 >gi|194855767|ref|XP_001968610.1| GG24404 [Drosophila erecta] gi|190660477|gb|EDV57669.1| GG24404 [Drosophila erecta] Length = 993 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 17/27 (62%), Positives = 18/27 (66%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449 >gi|144899461|emb|CAM76325.1| ClpX, ATPase regulatory subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 421 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAE 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189 >gi|104773522|ref|YP_618502.1| cell division protein FtsH [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422603|emb|CAI97206.1| Cell division protein FtsH [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 737 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F SG V A + L TN + + Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFYISGSDFVEMFVGVGASRVRDLFTNAKKNAPSI 284 Query: 109 LFIDEI 114 +FIDEI Sbjct: 285 IFIDEI 290 >gi|58038574|ref|YP_190538.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconobacter oxydans 621H] gi|81352673|sp|Q5FUR4|CLPX_GLUOX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|58000988|gb|AAW59882.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gluconobacter oxydans 621H] Length = 421 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 109 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 168 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 169 YNVDRAQRGIVYIDEIDKIS 188 >gi|75114857|sp|Q655S1|FTSH2_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 2, chloroplastic; Short=OsFTSH2; Flags: Precursor gi|52075838|dbj|BAD45446.1| putative FtsH-like protein Pftf precursor [Oryza sativa Japonica Group] gi|125556417|gb|EAZ02023.1| hypothetical protein OsI_24055 [Oryza sativa Indica Group] gi|125598182|gb|EAZ37962.1| hypothetical protein OsJ_22309 [Oryza sativa Japonica Group] Length = 676 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 280 >gi|56750609|ref|YP_171310.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] gi|81299751|ref|YP_399959.1| FtsH peptidase [Synechococcus elongatus PCC 7942] gi|56685568|dbj|BAD78790.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] gi|81168632|gb|ABB56972.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Synechococcus elongatus PCC 7942] Length = 630 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240 >gi|13476995|ref|NP_108565.1| ATP-dependent protease ATP-binding subunit ClpX [Mesorhizobium loti MAFF303099] gi|21263478|sp|Q982V5|CLPX_RHILO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|14027758|dbj|BAB54351.1| ATP-dependent Clp protease ATP binding subunit; ClpX [Mesorhizobium loti MAFF303099] Length = 424 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLIGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 172 YNVERAQRGIVYIDEIDKIS 191 >gi|313680147|ref|YP_004057886.1| ATP-dependent clp protease ATP-binding subunit clpx [Oceanithermus profundus DSM 14977] gi|313152862|gb|ADR36713.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oceanithermus profundus DSM 14977] Length = 398 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 25/123 (20%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE------ALDHVLFVGPPGLGKTT 69 L RP ++ F GQ EA L V + R + +VL +GP G GKT Sbjct: 57 LPRPAEIKAFLDDYVIGQEEAKKVLAVAVYNHYKRLQHPEAELGKSNVLLIGPTGTGKTL 116 Query: 70 LAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDEIH 115 LA+ +AR+L V F + +AG D+ +L L +R +++IDEI Sbjct: 117 LAETLARQLKVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYNVEAAERGIIYIDEID 176 Query: 116 RLS 118 +++ Sbjct: 177 KIA 179 >gi|303247806|ref|ZP_07334075.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans JJ] gi|302490890|gb|EFL50789.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans JJ] Length = 609 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ VA E GV F S SG Sbjct: 194 VLLIGPPGTGKTLLARAVAGEAGVPFFSISG 224 >gi|291238538|ref|XP_002739185.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii] Length = 434 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFR--STSGPVIAKAGDLAALLTNL-------EDRD 107 +L GPPG GK+ LAQ V+ E+ F S+S V + G+ L+ L + R Sbjct: 168 ILLYGPPGTGKSRLAQAVSSEIDSVFYCVSSSDLVSSWVGESEKLIKELFQHAVDQKGRS 227 Query: 108 VLFIDEI 114 V+FIDEI Sbjct: 228 VVFIDEI 234 >gi|283852375|ref|ZP_06369645.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio sp. FW1012B] gi|283572223|gb|EFC20213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio sp. FW1012B] Length = 417 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 31/145 (21%) Query: 5 EGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIE--------AAKARA 51 E + +VS+E LL P R L+E+ GQ +A L V + A A A Sbjct: 45 EIIAQESVSEETEGGKLLPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGAAGA 104 Query: 52 EALD----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAAL 99 + ++ ++L +GP G GKT LAQ +AR L V F + +AG L L Sbjct: 105 DDVEIDKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVQL 164 Query: 100 LTNLE------DRDVLFIDEIHRLS 118 L N + + +++IDEI +++ Sbjct: 165 LQNADYDIEAASKGIIYIDEIDKIA 189 >gi|242005728|ref|XP_002423714.1| Katanin p60 ATPase-containing subunit, putative [Pediculus humanus corporis] gi|212506899|gb|EEB10976.1| Katanin p60 ATPase-containing subunit, putative [Pediculus humanus corporis] Length = 526 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 282 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 341 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 342 IFIDEIDSL 350 >gi|307152321|ref|YP_003887705.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] gi|306982549|gb|ADN14430.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] Length = 672 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S S + G AA + +L ++ + Sbjct: 240 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFEQAKQQAPCI 299 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 300 IFIDEL 305 >gi|166367879|ref|YP_001660152.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166090252|dbj|BAG04960.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 628 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|166033186|ref|ZP_02236015.1| hypothetical protein DORFOR_02908 [Dorea formicigenerans ATCC 27755] gi|166027543|gb|EDR46300.1| hypothetical protein DORFOR_02908 [Dorea formicigenerans ATCC 27755] Length = 612 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F + SG Sbjct: 204 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 234 >gi|309780957|ref|ZP_07675696.1| FtsH cell division protein [Ralstonia sp. 5_7_47FAA] gi|330824647|ref|YP_004387950.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans K601] gi|57282289|emb|CAD32530.1| putative zinc metallopeptidase [uncultured bacterium] gi|308920260|gb|EFP65918.1| FtsH cell division protein [Ralstonia sp. 5_7_47FAA] gi|329310019|gb|AEB84434.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans K601] Length = 627 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 8/92 (8%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 VE LK E + A VL VGPPG GKT L + VA E GV F S SG + Sbjct: 170 VEIVDFLKNPQEYGRLGARIPKGVLLVGPPGTGKTLLTKAVAGEAGVPFFSISGSEFVEM 229 Query: 93 -AGDLAALLTNLEDR------DVLFIDEIHRL 117 G AA + +L ++ ++FIDE+ L Sbjct: 230 FVGVGAARVRDLFEQARGQAPAIIFIDELDAL 261 >gi|18033709|gb|AAL57218.1|AF361493_1 FNP001 [Homo sapiens] Length = 361 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108 VL GPPG GKT +A+ A+E G F R+ + ++ LAA + +L + + Sbjct: 129 VLLYGPPGCGKTLIAKATAKEAGCRFINLQPRTLTDKWYGESQKLAAAVFSLAIKLQPSI 188 Query: 109 LFIDEI 114 +FIDEI Sbjct: 189 IFIDEI 194 >gi|46199052|ref|YP_004719.1| ATP-dependent protease La [Thermus thermophilus HB27] gi|81405922|sp|Q72JM6|LON2_THET2 RecName: Full=Lon protease 2; AltName: Full=ATP-dependent protease La 2 gi|46196676|gb|AAS81092.1| ATP-dependent protease La [Thermus thermophilus HB27] Length = 804 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 84/227 (37%), Gaps = 51/227 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100 +LFVGPPG+GKT++A+ +A LG + S + D + L Sbjct: 358 LLFVGPPGVGKTSIAKSIAEALGRKYVRVSLGGVRDESDIRGHRRTYIGAMPGRIIQGLR 417 Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V +DE+ +L I + E+L PA +D +G V +LS Sbjct: 418 QAGTKNPVFLLDEVDKLGISYQGDPAAALLEVLDPAQNKEFVDHYLG-------VPFDLS 470 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAVTDEA 207 I + PL DR PI Y E E L + ++ R K GL Sbjct: 471 EVMFICTANFPQNIPAPLYDRME-PIEFTSYTEQEKLEIAKRYLLPRQLKENGLEPEQVV 529 Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 E A L R + + A + + REI ALLR A Sbjct: 530 VTEAA------------LTRLITHYTREAGVRQLEREI--GALLRKA 562 >gi|330686091|gb|EGG97713.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis VCU121] Length = 685 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|325266076|ref|ZP_08132762.1| ATP-dependent Clp protease ATP-binding subunit [Kingella denitrificans ATCC 33394] gi|324982714|gb|EGC18340.1| ATP-dependent Clp protease ATP-binding subunit [Kingella denitrificans ATCC 33394] Length = 427 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +VL +GP G GKT + Q +AR+L V F + +AG D+ ++T L Sbjct: 120 NVLMIGPTGSGKTYMVQSLARQLNVPFAMADATTLTEAGYVGEDVETIITKLLGNCDFNV 179 Query: 104 --EDRDVLFIDEIHRLS 118 +++IDEI ++S Sbjct: 180 EKAQHGIIYIDEIDKIS 196 >gi|321262545|ref|XP_003195991.1| peroxisome biosynthesis protein PAS1 (Peroxin-1) [Cryptococcus gattii WM276] gi|317462466|gb|ADV24204.1| Peroxisome biosynthesis protein PAS1 (Peroxin-1), putative [Cryptococcus gattii WM276] Length = 1009 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L G PG GKT LA VA+E G+NF S GP I Sbjct: 687 LLLYGYPGCGKTLLASAVAKECGLNFISVKGPEI 720 >gi|310821962|ref|YP_003954320.1| ATP-dependent metalloprotease ftsh [Stigmatella aurantiaca DW4/3-1] gi|309395034|gb|ADO72493.1| ATP-dependent metalloprotease FtsH [Stigmatella aurantiaca DW4/3-1] Length = 683 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 237 VLLVGPPGTGKTLLARAVAGEAGVPFFSLSG 267 >gi|320010035|gb|ADW04885.1| ATP-dependent metalloprotease FtsH [Streptomyces flavogriseus ATCC 33331] Length = 682 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 182 VEELYEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239 >gi|239637497|ref|ZP_04678471.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603] gi|239596942|gb|EEQ79465.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603] Length = 685 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|238926239|ref|ZP_04657999.1| ATP dependent protease ATP-binding subunit [Selenomonas flueggei ATCC 43531] gi|238885919|gb|EEQ49557.1| ATP dependent protease ATP-binding subunit [Selenomonas flueggei ATCC 43531] Length = 421 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 25/112 (22%) Query: 32 GQVEACSNLKVF-------IEAAKARAEALD----HVLFVGPPGLGKTTLAQVVARELGV 80 GQ EA +L V I A + + E ++ +VL +GP G GKT LAQ +AR L V Sbjct: 77 GQDEAKKSLSVAVYNHYKRIHAGQGKNEDVELRKSNVLMIGPTGSGKTLLAQTLARILNV 136 Query: 81 NFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDEIHRLS 118 F + +AG D+ +L L R +++IDEI +++ Sbjct: 137 PFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQRGIIYIDEIDKIA 188 >gi|225022112|ref|ZP_03711304.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii ATCC 33806] gi|224945045|gb|EEG26254.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii ATCC 33806] Length = 977 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 36/70 (51%), Gaps = 9/70 (12%) Query: 26 TLEEFTGQVEACSNL---KVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77 T + G EA L K F++ +R EAL VL GPPG GKT LA+ VA E Sbjct: 165 TFADVAGANEAVDELQEIKDFLQDP-SRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 223 Query: 78 LGVNFRSTSG 87 GV F S SG Sbjct: 224 AGVPFYSISG 233 >gi|255563409|ref|XP_002522707.1| Protein cdcH, putative [Ricinus communis] gi|223538057|gb|EEF39669.1| Protein cdcH, putative [Ricinus communis] Length = 828 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT +A+ VA E G NF GP Sbjct: 595 ILLYGPPGCGKTLIAKAVANEAGANFIHIKGP 626 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 10/67 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107 +L GPPG GKT LA +A E GV F S + +G A N+ + Sbjct: 290 ILLHGPPGCGKTKLAHAIANETGVPFYKISATEVV-SGVSGASEENIRELFSKAYRTAPS 348 Query: 108 VLFIDEI 114 ++FIDEI Sbjct: 349 IVFIDEI 355 >gi|195051153|ref|XP_001993043.1| GH13305 [Drosophila grimshawi] gi|193900102|gb|EDV98968.1| GH13305 [Drosophila grimshawi] Length = 332 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80 RP L++ E S + FI + L H+LF GPPG GKT+ AR+L Sbjct: 18 RPNCLDDLISHEEIISTITRFINQKQ-----LPHLLFYGPPGTGKTSTILACARQLYSSA 72 Query: 81 NFRS 84 +F+S Sbjct: 73 HFKS 76 >gi|172036185|ref|YP_001802686.1| cell division protein [Cyanothece sp. ATCC 51142] gi|171697639|gb|ACB50620.1| cell division protein [Cyanothece sp. ATCC 51142] Length = 628 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|126660834|ref|ZP_01731928.1| cell division protein; FtsH [Cyanothece sp. CCY0110] gi|126617885|gb|EAZ88660.1| cell division protein; FtsH [Cyanothece sp. CCY0110] Length = 628 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|157116507|ref|XP_001658526.1| aaa atpase [Aedes aegypti] gi|108876428|gb|EAT40653.1| aaa atpase [Aedes aegypti] Length = 546 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 304 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 363 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 364 IFIDEIDSL 372 >gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans JEC21] gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 373 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP +L++ + S ++ FIEA + L H+L GPPG GKT+ +AR L Sbjct: 57 VEKYRPVSLDDVVSHKDITSTIEKFIEAGR-----LPHLLLYGPPGTGKTSTVLALARRL 111 >gi|150390919|ref|YP_001320968.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens QYMF] gi|310943083|sp|A6TSZ1|FTSH1_ALKMQ RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|149950781|gb|ABR49309.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens QYMF] Length = 590 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 V+ G PG GKT LA+ +A E GV F + SG + AG + L +D+ V Sbjct: 191 VILYGSPGTGKTLLARALASEAGVEFLAVSGSDFVQVYAGLGAGRIRNLFKKAKDKGKCV 250 Query: 109 LFIDEI 114 +FIDEI Sbjct: 251 IFIDEI 256 >gi|219669328|ref|YP_002459763.1| ATPase AAA [Desulfitobacterium hafniense DCB-2] gi|219539588|gb|ACL21327.1| AAA ATPase central domain protein [Desulfitobacterium hafniense DCB-2] Length = 617 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 40/176 (22%) Query: 56 HVLFVGPPGLGKTTLAQVVA---RELGVNFRST------SGPVIAKAGDLAALLTNLEDR 106 H++F G PG GKTT+A+++A + LG+ + SG V G A + + Sbjct: 396 HLVFSGNPGTGKTTVARLLAEIYKALGLVSKGQLIETDRSGLVAGYVGQTALKTQEVISK 455 Query: 107 ---DVLFIDEIHRLS-------IIVEEI--LYPAMEDFQLDL--MVGEGPSARSVKINLS 152 +LFIDE + L+ E I L AMED + DL +V P + Sbjct: 456 AKGGILFIDEAYSLTENRGEADFGTEAIDTLVKAMEDNRADLVIIVAGYPEP------ME 509 Query: 153 RFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207 RF L +NP L+ RF I + Y E+L I++ K T L+++ +A Sbjct: 510 RF----------LDSNPGLRSRFNKFISFDDYSAEELLLILKSMCKKTNLSLSSQA 555 >gi|32035049|ref|ZP_00135115.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208745|ref|YP_001053970.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus pleuropneumoniae L20] gi|190150598|ref|YP_001969123.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250640|ref|ZP_07336837.1| ATP-dependent protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252092|ref|ZP_07338261.1| ATP-dependent protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246196|ref|ZP_07528277.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248302|ref|ZP_07530327.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307252912|ref|ZP_07534800.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255176|ref|ZP_07536994.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257344|ref|ZP_07539114.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259614|ref|ZP_07541338.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263942|ref|ZP_07545545.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097537|gb|ABN74365.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915729|gb|ACE61981.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649074|gb|EFL79261.1| ATP-dependent protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650628|gb|EFL80787.1| ATP-dependent protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852805|gb|EFM85029.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855172|gb|EFM87350.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859550|gb|EFM91575.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862049|gb|EFM94025.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864194|gb|EFM96107.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866259|gb|EFM98123.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306870704|gb|EFN02445.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 419 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 118 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDA 177 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 178 EQAERGIVFIDEIDKIT 194 >gi|34762904|ref|ZP_00143886.1| DNA polymerase III subunit gamma/tau [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887431|gb|EAA24519.1| DNA polymerase III subunit gamma/tau [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 490 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 6/59 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP + E +G+ E +LK+ ++ K+ A A LF GP G+GKTT+A+++A+ GVN Sbjct: 16 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVN 68 >gi|332702893|ref|ZP_08422981.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str. Walvis Bay] gi|332553042|gb|EGJ50086.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str. Walvis Bay] Length = 628 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL VGPPG GKT LA+ VA E GV F S +G V A + +L + + + Sbjct: 213 VLLVGPPGCGKTLLARAVAGEAGVPFFSITGSDFMEMFVGVGASRVRSLFEDAKKNTPSI 272 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 273 IFIDEL 278 >gi|325911570|ref|ZP_08173978.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII 143-D] gi|325476556|gb|EGC79714.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII 143-D] Length = 587 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 15 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 69 Query: 82 FRSTSGPVIAKAGDLAA 98 P + LAA Sbjct: 70 DSKDGEPCNQCSNCLAA 86 >gi|309806689|ref|ZP_07700685.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 03V1-b] gi|308166994|gb|EFO69177.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 03V1-b] Length = 587 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 15 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 69 Query: 82 FRSTSGPVIAKAGDLAA 98 P + LAA Sbjct: 70 DSKDGEPCNQCSNCLAA 86 >gi|309803539|ref|ZP_07697632.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 11V1-d] gi|308164423|gb|EFO66677.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 11V1-d] Length = 583 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 82 FRSTSGPVIAKAGDLAA 98 P + LAA Sbjct: 66 DSKDGEPCNQCSNCLAA 82 >gi|307190797|gb|EFN74666.1| Katanin p60 ATPase-containing subunit [Camponotus floridanus] Length = 504 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLED---RDV 108 VL VGPPG GKT LA+ VA E G F + S + ++ L LL + Sbjct: 260 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 319 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 320 IFIDEIDSL 328 >gi|302681813|ref|XP_003030588.1| hypothetical protein SCHCODRAFT_57861 [Schizophyllum commune H4-8] gi|300104279|gb|EFI95685.1| hypothetical protein SCHCODRAFT_57861 [Schizophyllum commune H4-8] Length = 1042 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L G PG GKT LA VA+E G+NF S GP I Sbjct: 728 LLLYGYPGCGKTLLASAVAKECGLNFISVKGPEI 761 >gi|299137537|ref|ZP_07030718.1| ATP-dependent protease La [Acidobacterium sp. MP5ACTX8] gi|298600178|gb|EFI56335.1| ATP-dependent protease La [Acidobacterium sp. MP5ACTX8] Length = 810 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 96/230 (41%), Gaps = 42/230 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 + FVGPPG+GKT+L + +AR LG F S + A G + L Sbjct: 366 LCFVGPPGVGKTSLGRSIARALGRKFSRISLGGMHDEAEIRGHRRTYIGALPGQIIQHLK 425 Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 +E D +F +DEI +L S + E L P + D + + +LS Sbjct: 426 RVEVNDPVFMLDEIDKLGRDFRGDPSSALLETLDPEQNNTFRDNYLDQ-------PFDLS 478 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAVT--D 205 + I ++ + PL DR I I L Y E+ K ++ R K G++V + Sbjct: 479 KVLFICTANQLDPIPAPLLDRMEI-IELTGYTEEEKVNIAEKYLIPRQIKENGISVDLIE 537 Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 +A+ +R R AG +RR+ + + R++A+ +L I Sbjct: 538 FPTESVALIARHYTREAG--VRRLEQLIGTV-CRKLARKVAEGRTEKLVI 584 >gi|291278627|ref|YP_003495462.1| ATP-dependent Lon protease [Deferribacter desulfuricans SSM1] gi|290753329|dbj|BAI79706.1| ATP-dependent Lon protease [Deferribacter desulfuricans SSM1] Length = 772 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 21/26 (80%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF 82 + FVGPPG+GKT+LA+ +A LG NF Sbjct: 349 ICFVGPPGVGKTSLAKSIAEALGRNF 374 >gi|294660198|ref|NP_852808.2| cell division protease FtsH-like protein [Mycoplasma gallisepticum str. R(low)] gi|310946906|sp|D3FFN2|FTSH_MYCGH RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|284811848|gb|AAP56376.2| cell division protease ftsH-like protein [Mycoplasma gallisepticum str. R(low)] gi|284930269|gb|ADC30208.1| cell division protease ftsH-like protein [Mycoplasma gallisepticum str. R(high)] Length = 765 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 20/151 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 V+ GPPG GKT LA+ VA E GV F +G G A + NL + + Sbjct: 310 VVLYGPPGTGKTLLAKAVAGEAGVPFFQVTGSAFEDMLVGVGAKRVRNLFAKAKKAAPCI 369 Query: 109 LFIDEIHRLSII--VEEILYPAMEDFQLDLMVGE--GPSARSVKINLSRFTLIAATTRVG 164 +FIDEI + EI + D L+ ++ E G S R+ I ++AAT R+ Sbjct: 370 IFIDEIDSVGSKRGKYEISAGSATDQTLNQLLAEMDGFSTRTGII------VMAATNRLD 423 Query: 165 LLTNPL--QDRFGIPIRLNFYEIEDLKTIVQ 193 +L + L RF I++N +I++ + I++ Sbjct: 424 VLDDALLRPGRFDRHIQVNLPDIKEREAILK 454 >gi|258542725|ref|YP_003188158.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-01] gi|256633803|dbj|BAH99778.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-01] gi|256636862|dbj|BAI02831.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-03] gi|256639915|dbj|BAI05877.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-07] gi|256642971|dbj|BAI08926.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-22] gi|256646026|dbj|BAI11974.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-26] gi|256649079|dbj|BAI15020.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-32] gi|256652066|dbj|BAI18000.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655123|dbj|BAI21050.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-12] Length = 421 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 109 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 168 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 169 YNVERAQRGIVYIDEIDKIS 188 >gi|305680500|ref|ZP_07403308.1| putative cell division protease FtsH [Corynebacterium matruchotii ATCC 14266] gi|305660031|gb|EFM49530.1| putative cell division protease FtsH [Corynebacterium matruchotii ATCC 14266] Length = 974 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 V+ +K F++ +R EAL VL GPPG GKT LA+ VA E GV F S SG Sbjct: 176 VDELQEIKDFLQDP-SRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233 >gi|226509884|ref|NP_001150200.1| ATPase family AAA domain-containing protein 1 [Zea mays] gi|195637516|gb|ACG38226.1| ATPase family AAA domain-containing protein 1 [Zea mays] Length = 364 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 19/138 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELG---VNFRSTS--GPVIAKAGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ +ARE G +N R ++ A L A + +L + + Sbjct: 123 VLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAI 182 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLLT 167 +FIDE+ + AM + + + M + +G + +R ++AAT R L Sbjct: 183 IFIDEVDSFLGQRRTTDHEAMTNMKTEFMSLWDGFTTDQN----ARVMVLAATNRPSELD 238 Query: 168 NPLQDRF------GIPIR 179 + RF GIP++ Sbjct: 239 EAILRRFTQIFEIGIPVQ 256 >gi|226491602|ref|NP_001147824.1| mitochondrial chaperone BCS1 [Zea mays] gi|195613970|gb|ACG28815.1| mitochondrial chaperone BCS1 [Zea mays] Length = 468 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 L GPPG GK++L +A L + + DL LL N+++R +L I++I Sbjct: 243 LLYGPPGTGKSSLIAAMANHLRFDIYDLELTAVTSNSDLRRLLVNMDNRSILVIEDI 299 >gi|195434969|ref|XP_002065474.1| GK15463 [Drosophila willistoni] gi|194161559|gb|EDW76460.1| GK15463 [Drosophila willistoni] Length = 980 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/26 (65%), Positives = 18/26 (69%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 408 LLCGPPGLGKTTLAHTIARHAGYNVR 433 >gi|195117224|ref|XP_002003149.1| GI17752 [Drosophila mojavensis] gi|193913724|gb|EDW12591.1| GI17752 [Drosophila mojavensis] Length = 993 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/27 (62%), Positives = 18/27 (66%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 413 ALLCGPPGLGKTTLAHTIARHAGYNVR 439 >gi|163814649|ref|ZP_02206038.1| hypothetical protein COPEUT_00800 [Coprococcus eutactus ATCC 27759] gi|158450284|gb|EDP27279.1| hypothetical protein COPEUT_00800 [Coprococcus eutactus ATCC 27759] Length = 641 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT +A+ +A E GV F S SG Sbjct: 219 VLLVGPPGTGKTLMAKAIAGEAGVPFFSISG 249 >gi|197117409|ref|YP_002137836.1| DNA-binding ATP-dependent protease La [Geobacter bemidjiensis Bem] gi|197086769|gb|ACH38040.1| DNA-binding ATP-dependent protease La [Geobacter bemidjiensis Bem] Length = 800 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 45/183 (24%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83 FI K + + +L VGPPG+GKT++ + +A LG F R Sbjct: 363 FIAVGKMKGDISGSILCLVGPPGVGKTSIGKSIADALGRTFYRFSLGGMRDEAEIKGHRR 422 Query: 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE--------EILYP----AMED 131 + G + K + A+ + VL +DEI ++ + E+L P + D Sbjct: 423 TYIGAMPGKF--VQAMKSAGSSNPVLMLDEIDKIGASFQGDPASALLEVLDPEQNGSFRD 480 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 LD V +LS IA ++ + PL DR + IRL+ Y +E+ I Sbjct: 481 HYLD-----------VPFDLSNVLFIATANQLDTIPAPLLDRMEV-IRLSGYVLEEKMEI 528 Query: 192 VQR 194 +R Sbjct: 529 ARR 531 >gi|15617460|gb|AAL02426.1|AF287273_1 DNA replication accessory factor Cutlet [Drosophila melanogaster] Length = 993 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/27 (62%), Positives = 18/27 (66%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449 >gi|73663554|ref|YP_302335.1| ATP-dependent Zn metallopeptidase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496069|dbj|BAE19390.1| ATP-dependent Zn metallopeptidase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 696 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 202 VLLVGPPGTGKTLLARAVAGEAGTPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 261 Query: 109 LFIDEI 114 +FIDEI Sbjct: 262 IFIDEI 267 >gi|17554730|ref|NP_498521.1| RFC (DNA replication factor) family member (rfc-4) [Caenorhabditis elegans] gi|1703051|sp|P53016|RFC4_CAEEL RecName: Full=Replication factor C subunit 4; AltName: Full=Activator 1 subunit 4 gi|1072162|gb|AAA81689.1| Rfc (dna replication factor) family protein 4, confirmed by transcript evidence [Caenorhabditis elegans] Length = 334 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ Q E + LK + L H+LF GPPG GKT+ A R+L Sbjct: 22 RPKTLDDIAYQDEVVTMLK-----GALQGRDLPHLLFYGPPGTGKTSAALAFCRQL 72 >gi|119714708|ref|YP_921673.1| Mername-AA223 peptidase [Nocardioides sp. JS614] gi|119535369|gb|ABL79986.1| membrane protease FtsH catalytic subunit [Nocardioides sp. JS614] Length = 681 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +E +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 172 IEELGEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 229 >gi|71028744|ref|XP_764015.1| replication factor C subunit 3 [Theileria parva strain Muguga] gi|68350969|gb|EAN31732.1| replication factor C subunit 3, putative [Theileria parva] Length = 347 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ + S L +F E + L H+LF GPPG GKT+ ++R L Sbjct: 14 RPETLQDIISHEDIMSTLMIFAEKGQ-----LPHLLFHGPPGSGKTSTILAISRYL 64 >gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var. neoformans B-3501A] gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var. neoformans B-3501A] Length = 373 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP +L++ + S ++ FIEA + L H+L GPPG GKT+ +AR L Sbjct: 57 VEKYRPVSLDDVVSHKDITSTIEKFIEAGR-----LPHLLLYGPPGTGKTSTVLALARRL 111 >gi|332158940|ref|YP_004424219.1| cell division control protein [Pyrococcus sp. NA2] gi|331034403|gb|AEC52215.1| cell division control protein [Pyrococcus sp. NA2] Length = 840 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 16/116 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G +A ++ +E E + VL GPPG GKT LA+ VA E Sbjct: 210 TYEDIGGLKDAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269 Query: 78 LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125 F + +GP I G+ L + E+ ++FIDEI ++ EE++ Sbjct: 270 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVV 325 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ VA E NF + GP + Sbjct: 584 ILLYGPPGTGKTLLAKAVATESQANFIAIRGPEV 617 >gi|323140178|ref|ZP_08075161.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] gi|322394566|gb|EFX97184.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] Length = 453 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ +A E GV F S SG + G A+ + ++ D+ + Sbjct: 195 VLLVGPPGTGKTLLARAIAGEAGVPFFSISGSHFVEMFVGVGASRVRDMFDQAKKNAPCI 254 Query: 109 LFIDEI 114 +F+DEI Sbjct: 255 VFVDEI 260 >gi|312875754|ref|ZP_07735749.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2053A-b] gi|311088746|gb|EFQ47195.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2053A-b] Length = 583 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 82 FRSTSGPVIAKAGDLAA 98 P + LAA Sbjct: 66 DSKDGEPCNQCSNCLAA 82 >gi|309805430|ref|ZP_07699477.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 09V1-c] gi|308165248|gb|EFO67484.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LactinV 09V1-c] Length = 583 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 82 FRSTSGPVIAKAGDLAA 98 P + LAA Sbjct: 66 DSKDGEPCNQCSNCLAA 82 >gi|302786134|ref|XP_002974838.1| hypothetical protein SELMODRAFT_150045 [Selaginella moellendorffii] gi|300157733|gb|EFJ24358.1| hypothetical protein SELMODRAFT_150045 [Selaginella moellendorffii] Length = 888 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 35/214 (16%) Query: 8 LSRNVSQEDADISLL--RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPG 64 L +S E+ ++ L+ + R E G + + ++ K + +A VL FVGPPG Sbjct: 351 LPWQISSEERELDLVAAKERLDSEHYGLGKVKKRIIEYLAVRKLKPDARGPVLCFVGPPG 410 Query: 65 LGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------------DV 108 +GKT+LA +A LG F R + G V +A G + ++ R V Sbjct: 411 VGKTSLASSIAGALGRLFIRISLGGVKDEADIRGHRRTYIGSMPGRLIEGIKRVGVNNPV 470 Query: 109 LFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160 + +DEI + V E+L P D + +V +LS+ +A Sbjct: 471 MLLDEIDKTGTDVRGDPASALLEVLDPEQNRTFNDHYL-------NVPFDLSKVVFVATA 523 Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 R+ ++ PL DR + I L Y E+ I R Sbjct: 524 NRIQPISPPLLDRMEV-IELPGYTSEEKLCIAMR 556 >gi|289705666|ref|ZP_06502051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Micrococcus luteus SK58] gi|289557614|gb|EFD50920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Micrococcus luteus SK58] Length = 432 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108 ++L VGP G GKT LAQ +AR L V F + +AG + + N+ D DV Sbjct: 125 NILMVGPTGSGKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAADYDV 184 Query: 109 -------LFIDEIHRLS 118 ++IDEI ++S Sbjct: 185 KKAEQGIIYIDEIDKIS 201 >gi|288958488|ref|YP_003448829.1| cell division protease [Azospirillum sp. B510] gi|288910796|dbj|BAI72285.1| cell division protease [Azospirillum sp. B510] Length = 593 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 +L VGPPG GKT LA+ A E GV F + SG + G AA + NL + Sbjct: 190 LLLVGPPGTGKTMLAKAAAGEAGVPFFAASGSDFVEMFVGLGAARVRNLFKTARASAPCI 249 Query: 109 LFIDEIHRLS 118 LFIDEI L+ Sbjct: 250 LFIDEIDALA 259 >gi|262277076|ref|ZP_06054869.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [alpha proteobacterium HIMB114] gi|262224179|gb|EEY74638.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [alpha proteobacterium HIMB114] Length = 423 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 23/101 (22%) Query: 32 GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 G E SN +E AK+ ++L +GP G GKT LAQ +A+ L V F + Sbjct: 95 GHTEKSSN---DVELAKS------NILLIGPTGCGKTLLAQTLAKILDVPFTMADATTLT 145 Query: 92 KAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118 +AG + + N+ R +++IDE+ ++S Sbjct: 146 EAGYVGEDVENIILKLLQAADYNVEKAQRGIVYIDEVDKIS 186 >gi|255038784|ref|YP_003089405.1| ATP-dependent metalloprotease FtsH [Dyadobacter fermentans DSM 18053] gi|254951540|gb|ACT96240.1| ATP-dependent metalloprotease FtsH [Dyadobacter fermentans DSM 18053] Length = 685 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T + G EA +K +E K A+ L VGPPG GKT LA+ VA E Sbjct: 195 TFNDVAGLDEAKEEIKEIVEYLQSPDKFKKLGAKIPKGALLVGPPGTGKTLLAKAVAGEA 254 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 GV F S SG V A + L +++ ++FIDEI Sbjct: 255 GVPFFSLSGSDFVEMFVGVGAARVRDLFKQAKEKAPCIIFIDEI 298 >gi|242054017|ref|XP_002456154.1| hypothetical protein SORBIDRAFT_03g031360 [Sorghum bicolor] gi|241928129|gb|EES01274.1| hypothetical protein SORBIDRAFT_03g031360 [Sorghum bicolor] Length = 519 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 271 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 330 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 331 IFIDEIDSL 339 >gi|238061465|ref|ZP_04606174.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149] gi|237883276|gb|EEP72104.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149] Length = 671 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ A+ +AL VL GPPG GKT LA+ VA E GV F S SG Sbjct: 181 VEELHEIKDFLQNP-AKYQALGAKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISG 238 >gi|225571155|ref|ZP_03780153.1| hypothetical protein CLOHYLEM_07243 [Clostridium hylemonae DSM 15053] gi|225159986|gb|EEG72605.1| hypothetical protein CLOHYLEM_07243 [Clostridium hylemonae DSM 15053] Length = 615 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F + SG Sbjct: 204 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 234 >gi|289579864|ref|YP_003478330.1| ATPase AAA, CDC48 subfamily [Natrialba magadii ATCC 43099] gi|289529417|gb|ADD03768.1| AAA family ATPase, CDC48 subfamily [Natrialba magadii ATCC 43099] Length = 742 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E +F S +GP +I+K G+ L + E + Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEESPAI 285 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDE+ ++ E++ Sbjct: 286 IFIDELDSIAPKREDV 301 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E NF S GP Sbjct: 499 VLLYGPPGTGKTLMAKAVANETNANFISVRGP 530 >gi|224141399|ref|XP_002324060.1| predicted protein [Populus trichocarpa] gi|222867062|gb|EEF04193.1| predicted protein [Populus trichocarpa] Length = 677 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 251 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 281 >gi|194707888|gb|ACF88028.1| unknown [Zea mays] Length = 516 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 268 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 327 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 328 IFIDEIDSL 336 >gi|218245487|ref|YP_002370858.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|257058522|ref|YP_003136410.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] gi|218165965|gb|ACK64702.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|256588688|gb|ACU99574.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] Length = 628 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|170030497|ref|XP_001843125.1| AAA family ATPase [Culex quinquefasciatus] gi|167867366|gb|EDS30749.1| AAA family ATPase [Culex quinquefasciatus] Length = 640 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 398 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 457 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 458 IFIDEIDSL 466 >gi|77993704|gb|ABB13465.1| 26S proteasome subunit RPT4 [Schistosoma mansoni] Length = 368 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRS--TSGPVIAKAGDLAALLTNLED--RD----V 108 L GPPG GKT LA+ VA +L VNF +SG V G+ A L+ + + RD + Sbjct: 176 CLLYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFNYARDHQPCI 235 Query: 109 LFIDEI 114 +F+DEI Sbjct: 236 IFMDEI 241 >gi|125527277|gb|EAY75391.1| hypothetical protein OsI_03290 [Oryza sativa Indica Group] Length = 519 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 271 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARFYAPST 330 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 331 IFIDEIDSL 339 >gi|145545135|ref|XP_001458252.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426071|emb|CAK90855.1| unnamed protein product [Paramecium tetraurelia] Length = 359 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 30/191 (15%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 +LF GPPG GKT LA+ VA ++ F + S + + G+ L+ L D V Sbjct: 129 ILFYGPPGNGKTLLAKAVANQIKCCFFNISASTLVQKHLGEGEKLMRALFDVAFQLQPSV 188 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 +F+DEI + + + A + + ++ S + R LIAAT R + + Sbjct: 189 IFVDEIDSILSKRSQNEHEASRRLKTEFLISFDGIQSS---DQDRVFLIAATNRPQDIDD 245 Query: 169 PLQDRFGIPIRLNFYE----IEDLKTIVQR-------------GAKLTGLAVTDEAAC-- 209 + RF + I ++ E +E +K+++ + KL G + +D A Sbjct: 246 AVLRRFTVKILIDQPELKVRVEMVKSLLSKVKNNLTEQQFQYVAEKLQGYSASDIKAVVK 305 Query: 210 EIAMRSRGTPR 220 E MR T R Sbjct: 306 EACMRPLRTDR 316 >gi|119493933|ref|ZP_01624495.1| cell division protein [Lyngbya sp. PCC 8106] gi|119452331|gb|EAW33525.1| cell division protein [Lyngbya sp. PCC 8106] Length = 628 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|219666120|ref|YP_002456555.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium hafniense DCB-2] gi|219536380|gb|ACL18119.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium hafniense DCB-2] Length = 554 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 132/353 (37%), Gaps = 89/353 (25%) Query: 23 RPRTLEEFTGQVEACSNL-KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP+ ++ GQ L +++ A A LF GP G GKTT A+V+A+ L Sbjct: 11 RPKNFKDMVGQDHVTKTLTNALMQSKVAHA-----YLFSGPRGTGKTTTAKVLAKALNCE 65 Query: 82 FRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIH------RLS--------IIV 121 R P A L A + ++ IDEI RLS I+ Sbjct: 66 HREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYII 125 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 +E+ E F L E P R V I ATT V + + R R Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPERVV--------FILATTEVHKIPLTILSRVQ---RFE 174 Query: 182 FYEI--EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 F+ I E + + + + + G V EA IA +S G R A +L Sbjct: 175 FHRIPLEQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSIL------------- 221 Query: 240 TITREIADAALLRLAID-KMGFDQLDLRYLTMIARNFGG---------------GPVGIE 283 D LL +D K+G +Q+ + L M+ F G +G E Sbjct: 222 -------DQCLL---LDGKLGVEQV-YQVLGMVGEEFSAQLVDHLLTGDYAKALGCLG-E 269 Query: 284 TISAGLSEPRDAIEDLIEPYMIQ-------QGFIQRTPRGRLLMPIAWQHLGI 329 I+ G+ +PR I +L++ YM Q Q F Q P R + Q LG+ Sbjct: 270 GINQGM-DPRQIIRELLD-YMRQALLYASTQAFPQVAPHLREHLAYQCQKLGL 320 >gi|42561751|ref|NP_563766.3| FTSH8; ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] gi|75331430|sp|Q8W585|FTSH8_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 8, chloroplastic; Short=AtFTSH8; Flags: Precursor gi|16930423|gb|AAL31897.1|AF419565_1 At1g06430/F12K11_24 [Arabidopsis thaliana] gi|27363292|gb|AAO11565.1| At1g06430/F12K11_24 [Arabidopsis thaliana] gi|28392858|gb|AAO41866.1| putative FtsH protease [Arabidopsis thaliana] gi|332189865|gb|AEE27986.1| cell division protease ftsH-8 [Arabidopsis thaliana] Length = 685 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 256 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 286 >gi|33862949|ref|NP_894509.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9313] gi|33634866|emb|CAE20852.1| FtsH ATP-dependent protease homolog [Prochlorococcus marinus str. MIT 9313] Length = 638 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|108763928|ref|YP_630246.1| ATP-dependent protease La [Myxococcus xanthus DK 1622] gi|547860|sp|P36773|LON1_MYXXA RecName: Full=Lon protease 1; AltName: Full=ATP-dependent protease La 1 gi|4838466|gb|AAD31005.1|AF127082_4 ATP-dependent protease LonV [Myxococcus xanthus] gi|303712|dbj|BAA02307.1| ATP-dependent protease La [Myxococcus xanthus] gi|108467808|gb|ABF92993.1| ATP-dependent protease La [Myxococcus xanthus DK 1622] Length = 817 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+LA+ +AR G F R + G V +A G L L Sbjct: 364 LCFVGPPGVGKTSLARSIARATGRKFVRLSLGGVRDEAEIRGHRRTYIGAMPGKLIQSLK 423 Query: 102 NL-EDRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 + V +DEI ++S + E+L P D LDL Sbjct: 424 KAGSNNPVFLLDEIDKMSTDFRGDPSAALLEVLDPEQNHTFNDHYLDL-----------D 472 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 +LS+ I + + PLQDR + IR+ Y + +I +R Sbjct: 473 YDLSKVMFICTANTMHNIPGPLQDRMEV-IRIAGYTEPEKLSIARR 517 >gi|330957800|gb|EGH58060.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv. maculicola str. ES4326] Length = 805 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++LS+ + + + PL DR + IRL+ Y E+ I +R Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKR 540 >gi|329114675|ref|ZP_08243434.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetobacter pomorum DM001] gi|326696155|gb|EGE47837.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetobacter pomorum DM001] Length = 421 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 109 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 168 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 169 YNVERAQRGIVYIDEIDKIS 188 >gi|310790313|gb|EFQ25846.1| ATPase [Glomerella graminicola M1.001] Length = 2283 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 13/72 (18%) Query: 59 FVGPPGLGKTTLAQVVAREL-------GVNFRSTSGPVIAKAGDLAALLTNLEDR----- 106 +G PG GKTT+A++ ++ L G F+ TSG +A G +AA LED Sbjct: 1323 LLGNPGTGKTTVARIYSKFLTSVGVIAGSGFKETSGSKLASMG-VAACQKMLEDMLNDGG 1381 Query: 107 DVLFIDEIHRLS 118 V+FIDE ++LS Sbjct: 1382 GVVFIDEAYQLS 1393 >gi|310830691|ref|YP_003965792.1| Probable metalloprotease transmembrane protein [Paenibacillus polymyxa SC2] gi|309250158|gb|ADO59724.1| Probable metalloprotease transmembrane protein [Paenibacillus polymyxa SC2] Length = 606 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA +++ ++ K A+ V+F GPPG GKT A+ +A E Sbjct: 170 TFKQIAGHEEAKEDMQYLVDFLKNPLNYTIMGAKLPKGVIFYGPPGTGKTLFAKALAGEA 229 Query: 79 GVNFRSTSGP-----VIAKAGDLAALLTNLEDRD---VLFIDEI 114 GV F S SG + + NL + ++FIDEI Sbjct: 230 GVPFFSVSGSDFVEKYVGTGASRVRDMFNLARKKAPCIIFIDEI 273 >gi|283457233|ref|YP_003361803.1| ATP-dependent Zn protease [Rothia mucilaginosa DY-18] gi|310946761|sp|D2NQQ7|FTSH_ROTMD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|283133218|dbj|BAI63983.1| ATP-dependent Zn protease [Rothia mucilaginosa DY-18] Length = 756 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 237 VLLYGPPGTGKTLLAKAVAGEAGVPFYSISG 267 >gi|269957762|ref|YP_003327551.1| ATP-dependent metalloprotease FtsH [Xylanimonas cellulosilytica DSM 15894] gi|269306443|gb|ACZ31993.1| ATP-dependent metalloprotease FtsH [Xylanimonas cellulosilytica DSM 15894] Length = 669 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 95/223 (42%), Gaps = 39/223 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L ++ + Sbjct: 205 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKQNAPAI 264 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-----------SRFTLI 157 +F+DEI + +G G R +N + LI Sbjct: 265 IFVDEIDAVG-------------RHRGAGMGGGHDEREQTLNQLLVEMDGFDVKTNVILI 311 Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 AAT R +L L RF I + +++ + I+Q AK + A ++A + Sbjct: 312 AATNRPDILDPALLRPGRFDRQIAVEAPDLKGREAILQVHAKGKPMV----PAVDLAAVA 367 Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258 R TP G L V + A + A++ + I D AL AID++ Sbjct: 368 RRTPGFTGADLANVLNEAALLTARSGAQLIDDRALDE-AIDRV 409 >gi|293330979|ref|NP_001168687.1| hypothetical protein LOC100382477 [Zea mays] gi|223950229|gb|ACN29198.1| unknown [Zea mays] Length = 516 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 268 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 327 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 328 IFIDEIDSL 336 >gi|223944623|gb|ACN26395.1| unknown [Zea mays] Length = 518 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 270 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 329 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 330 IFIDEIDSL 338 >gi|223042117|ref|ZP_03612289.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus minor 202] gi|223017094|gb|EEF15534.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus minor 202] Length = 414 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 117 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDP 176 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 177 EQAERGIVFIDEIDKIT 193 >gi|210076057|ref|XP_505704.2| YALI0F21329p [Yarrowia lipolytica] gi|199424971|emb|CAG78513.2| YALI0F21329p [Yarrowia lipolytica] Length = 845 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 605 VLLWGPPGCGKTLLAKAVASETAANFISVRGP 636 Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRDV---- 108 VL GPPG GKT LA +A + V F S S P + +G+ + + E R + Sbjct: 245 VLLHGPPGCGKTVLANAIANKAQVPFMSISAPSVVSGMSGESEKKIREIFEEARAIAPCL 304 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 305 LFIDEIDAVT 314 >gi|195471147|ref|XP_002087867.1| GE14801 [Drosophila yakuba] gi|194173968|gb|EDW87579.1| GE14801 [Drosophila yakuba] Length = 993 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/26 (65%), Positives = 18/26 (69%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 424 LLCGPPGLGKTTLAHTIARHAGYNVR 449 >gi|195148000|ref|XP_002014962.1| GL19453 [Drosophila persimilis] gi|194106915|gb|EDW28958.1| GL19453 [Drosophila persimilis] Length = 756 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/27 (62%), Positives = 18/27 (66%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449 >gi|189206397|ref|XP_001939533.1| ATP-dependent protease La [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187975626|gb|EDU42252.1| ATP-dependent protease La [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 923 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 33/163 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA----------GDLAALLTNLED 105 +L VGPPG+GKT+LA+ VA LG F S G V +A + L+ N Sbjct: 476 LLLVGPPGVGKTSLAKSVATALGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGLIVNGLK 535 Query: 106 R-----DVLFIDEIHRLSIIVE---------EILYPAMEDFQLDLMVGEGPSARSVKINL 151 + V +DEI +L ++ E+L P D V ++ I+L Sbjct: 536 KVGVANPVFLLDEIDKLGMMNHNGDPGAAMLEVLDPEQNHTFTDHYV-------NIPIDL 588 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 S+ IA + + PL DR I+L+ Y + + I R Sbjct: 589 SKVLFIATANSLDTIPPPLLDRMET-IQLSGYTTLEKRHIAAR 630 >gi|209885040|ref|YP_002288897.1| ATP-dependent Clp protease [Oligotropha carboxidovorans OM5] gi|229484078|sp|B6JGU8|CLPX_OLICO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|209873236|gb|ACI93032.1| ATP-dependent Clp protease [Oligotropha carboxidovorans OM5] Length = 424 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|187830110|ref|NP_001120721.1| filamentation temperature-sensitive H 2B [Zea mays] gi|166093209|gb|ABY82590.1| filamentation temperature-sensitive H 2B [Zea mays] gi|166093213|gb|ABY82592.1| filamentation temperature-sensitive H 2B [Zea mays] Length = 677 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 280 >gi|167759637|ref|ZP_02431764.1| hypothetical protein CLOSCI_01995 [Clostridium scindens ATCC 35704] gi|167662763|gb|EDS06893.1| hypothetical protein CLOSCI_01995 [Clostridium scindens ATCC 35704] Length = 614 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F + SG Sbjct: 203 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 233 >gi|124023247|ref|YP_001017554.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9303] gi|123963533|gb|ABM78289.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9303] Length = 638 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|167646808|ref|YP_001684471.1| ATP-dependent protease ATP-binding subunit ClpX [Caulobacter sp. K31] gi|189082487|sp|B0SZ62|CLPX_CAUSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|167349238|gb|ABZ71973.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter sp. K31] Length = 420 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 110 AKSNILLVGPTGTGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|115469444|ref|NP_001058321.1| Os06g0669400 [Oryza sativa Japonica Group] gi|113596361|dbj|BAF20235.1| Os06g0669400 [Oryza sativa Japonica Group] Length = 609 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 183 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 213 >gi|84468324|dbj|BAE71245.1| putative zinc dependent protease [Trifolium pratense] Length = 702 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 276 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 306 >gi|158313819|ref|YP_001506327.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec] gi|158109224|gb|ABW11421.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec] Length = 659 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 114/273 (41%), Gaps = 31/273 (11%) Query: 6 GLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH----VLFV 60 G+ R+ ++ +AD R + + G + S + F+ E H VL V Sbjct: 168 GMFGRSRAKITEADRPDTRFSDVAGYEGAKQEISEVVAFLRNPDQYLEVGAHGPRGVLMV 227 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFID 112 GPPG GKT LA+ VA E V F S +G V A + L T R ++FID Sbjct: 228 GPPGTGKTLLARAVAGEAEVPFLSITGSGFVEMFVGVGASRVRDLFTEARKRAPSIIFID 287 Query: 113 EIHRLSIIVEEILYPAMEDFQ---LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169 EI + + D + L+ ++ E S S ++AAT R L + Sbjct: 288 EIDAIGGRRGSSAFGGSNDEREQTLNQLLAEMDGFEST----SGVVVLAATNRPETLDHA 343 Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLT----GLAVTDEAACEIAMRSRGTPRIAGRL 225 L P R + L T +R L G A+TD+A ++ +RGTP +G Sbjct: 344 LLR----PGRFDRQVTVPLPTQSERAEILAVHTRGKALTDDA--DLTRIARGTPGFSGAD 397 Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258 L + + A + +A R + AA L A D++ Sbjct: 398 LASLVNEAAI-NAVRDGRSVVSAADLDAARDRI 429 >gi|328953179|ref|YP_004370513.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM 11109] gi|328453503|gb|AEB09332.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM 11109] Length = 624 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 196 VLLVGPPGTGKTLLARAIAGEAGVPFFSISG 226 >gi|325912930|ref|ZP_08175304.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII 60-B] gi|325477744|gb|EGC80882.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII 60-B] Length = 583 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 82 FRSTSGPVIAKAGDLAA 98 P + LAA Sbjct: 66 DSKDGEPCNQCSNCLAA 82 >gi|312870907|ref|ZP_07731012.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 3008A-a] gi|311093597|gb|EFQ51936.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 3008A-a] Length = 583 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 82 FRSTSGPVIAKAGDLAA 98 P + LAA Sbjct: 66 DSKDGEPCNQCSNCLAA 82 >gi|307110169|gb|EFN58405.1| hypothetical protein CHLNCDRAFT_140338 [Chlorella variabilis] Length = 881 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 18/32 (56%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 L GPPG GKT LAQ A G NF S GP Sbjct: 556 ALLYGPPGCGKTLLAQAAASRCGANFLSVRGP 587 >gi|299135042|ref|ZP_07028233.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Afipia sp. 1NLS2] gi|298590019|gb|EFI50223.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Afipia sp. 1NLS2] Length = 424 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|295094514|emb|CBK83605.1| ATP-dependent metalloprotease FtsH [Coprococcus sp. ART55/1] Length = 680 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT +A+ +A E GV F S SG Sbjct: 231 VLLVGPPGTGKTLMAKAIAGEAGVPFFSISG 261 >gi|260892395|ref|YP_003238492.1| Sigma 54 interacting domain protein [Ammonifex degensii KC4] gi|260864536|gb|ACX51642.1| Sigma 54 interacting domain protein [Ammonifex degensii KC4] Length = 557 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 R +S + +RP++ E GQ EA L+ + + HVL GPPG+GKT Sbjct: 55 RAISLSEPLAEKVRPQSFAEIVGQEEAIKALRAALCGPHPQ-----HVLLYGPPGVGKTA 109 Query: 70 LAQVVARELGVNFRSTSG 87 A++V E N S G Sbjct: 110 AARLVLEEAKHNPLSPFG 127 >gi|302530789|ref|ZP_07283131.1| cell division protein [Streptomyces sp. AA4] gi|302439684|gb|EFL11500.1| cell division protein [Streptomyces sp. AA4] Length = 667 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ AR +AL VL GPPG GKT LA+ VA E GV F + SG Sbjct: 49 VEELYEIKDFLQNP-ARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISG 106 >gi|255326126|ref|ZP_05367213.1| cell division protease FtsH [Rothia mucilaginosa ATCC 25296] gi|255296837|gb|EET76167.1| cell division protease FtsH [Rothia mucilaginosa ATCC 25296] Length = 724 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 216 VLLYGPPGTGKTLLAKAVAGEAGVPFYSISG 246 >gi|227832004|ref|YP_002833711.1| DNA polymerase III, gamma and tau subunit [Corynebacterium aurimucosum ATCC 700975] gi|227453020|gb|ACP31773.1| DNA polymerase III, gamma and tau subunit [Corynebacterium aurimucosum ATCC 700975] Length = 868 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + + L ++A + ++H LF GP G GKT+ A+++AR L Sbjct: 8 RPATFAEVVGQEQVTTPLSAALDAGR-----INHAYLFSGPRGCGKTSSARIMARSLNCE 62 Query: 82 FRSTSGPV 89 TS P Sbjct: 63 QGPTSTPC 70 >gi|210134230|ref|YP_002300669.1| ATP-dependent clp protease [Helicobacter pylori P12] gi|210132198|gb|ACJ07189.1| ATP-dependent clp protease [Helicobacter pylori P12] Length = 741 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 74/187 (39%), Gaps = 38/187 (20%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFR------------------STSGPVIAKAGDLAAL 99 LFVGP G+GKT LA+ +A L ++F S SG V + G L Sbjct: 480 LFVGPSGVGKTELAKELALNLNLHFERFDMSEYKEAHSVAKLIGSPSGYVGFEQGGLLVN 539 Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV------------ 147 +L +DEI + V ++L M++ L +G S + V Sbjct: 540 AIKKHPHCLLLLDEIEKAHSNVYDLLLQVMDNATLSDNLGNQASFKHVILIMTSNVGSKD 599 Query: 148 KINLSRFTLIAATTRVG-----LLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-RGAKLTGL 201 K L F+ A T+ LLT LQ R + N +ED + IV KL L Sbjct: 600 KDTLGFFS--AKNTKYDRAVKELLTPELQSRIDAIVPFNALSLEDFERIVSVELDKLKAL 657 Query: 202 AVTDEAA 208 A+ + A Sbjct: 658 ALEQDIA 664 >gi|195387666|ref|XP_002052515.1| GJ17580 [Drosophila virilis] gi|194148972|gb|EDW64670.1| GJ17580 [Drosophila virilis] Length = 994 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 17/26 (65%), Positives = 18/26 (69%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 420 LLCGPPGLGKTTLAHTIARHAGYNVR 445 >gi|220927298|ref|YP_002502600.1| AAA family ATPase, CDC48 subfamily [Methylobacterium nodulans ORS 2060] gi|219951905|gb|ACL62297.1| AAA family ATPase, CDC48 subfamily [Methylobacterium nodulans ORS 2060] Length = 757 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRST-SGPVIAK-AGDLAALLTNLEDR------DVL 109 L GPPG GKT LA+ VARE NF +T S +++K G+ ++ L R V+ Sbjct: 514 LLFGPPGTGKTLLAKAVAREASANFVATKSSDLLSKWYGESEQQVSRLFARARQVAPTVI 573 Query: 110 FIDEIHRLSII 120 FIDEI L+ + Sbjct: 574 FIDEIDSLAPV 584 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 8/75 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNL---EDRD---V 108 VL GPPG GKT LA+ VA E F +GP I ++ G+ L + R+ + Sbjct: 241 VLLYGPPGTGKTLLARAVANETEAQFFHIAGPEIMGSQYGESEQRLRQIFSEAQRNAPAI 300 Query: 109 LFIDEIHRLSIIVEE 123 +FIDEI ++ EE Sbjct: 301 IFIDEIDSIAPKREE 315 >gi|160878301|ref|YP_001557269.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans ISDg] gi|160426967|gb|ABX40530.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans ISDg] Length = 609 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 11/89 (12%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----- 88 V+ N K FI+ A VL GPPG GKT LA+ VA E GV F S SG Sbjct: 180 VDFLKNPKKFIQVG---ARIPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 236 Query: 89 -VIAKAGDLAALLTNLEDRD--VLFIDEI 114 V A + L + + + ++FIDEI Sbjct: 237 FVGVGASRVRDLFSEAKKNNPCIIFIDEI 265 >gi|58270968|ref|XP_572640.1| hypothetical protein CNI03110 [Cryptococcus neoformans var. neoformans JEC21] gi|57228899|gb|AAW45333.1| hypothetical protein CNI03110 [Cryptococcus neoformans var. neoformans JEC21] Length = 1124 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F E K R+ +L GPPG GKT LA+ VA +NF S GP Sbjct: 805 EMFGEGLKKRS----GILLYGPPGTGKTLLAKAVATSFSLNFFSVKGP 848 >gi|76802633|ref|YP_330728.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas pharaonis DSM 2160] gi|76558498|emb|CAI50090.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas pharaonis DSM 2160] Length = 759 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E+ +F SGP I G+ L + D + Sbjct: 233 VLLHGPPGTGKTLMAKAVANEIDAHFTDISGPEIMSKYYGESEEQLREVFDEASENAPAI 292 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 293 VFIDEIDSIA 302 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A VL GPPG GKT +A+ +A E NF S GP Sbjct: 501 QAAKGVLLYGPPGTGKTLMAKAIANEAQSNFISIKGP 537 >gi|16331432|ref|NP_442160.1| cell division protein FtsH [Synechocystis sp. PCC 6803] gi|2492510|sp|Q55700|FTSH2_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|1001602|dbj|BAA10230.1| cell division protein; FtsH [Synechocystis sp. PCC 6803] Length = 627 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 208 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 238 >gi|27380054|ref|NP_771583.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium japonicum USDA 110] gi|46576546|sp|Q89KG2|CLPX_BRAJA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|27353208|dbj|BAC50208.1| ATP-dependent Clp protease ATP-binding subunit [Bradyrhizobium japonicum USDA 110] Length = 423 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|16126204|ref|NP_420768.1| ATP-dependent protease ATP-binding subunit [Caulobacter crescentus CB15] gi|221234976|ref|YP_002517412.1| ATP-dependent protease ATP-binding subunit ClpX [Caulobacter crescentus NA1000] gi|239977101|sp|B8GX14|CLPX_CAUCN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|239977102|sp|P0CAU2|CLPX_CAUCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|3688207|emb|CAA09092.1| clpX protein [Caulobacter crescentus CB15] gi|13423422|gb|AAK23936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter crescentus CB15] gi|220964148|gb|ACL95504.1| ATP-dependent endopeptidase clp, ATP-binding subunit ClpX [Caulobacter crescentus NA1000] Length = 420 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 110 AKSNILLVGPTGTGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|116513517|ref|YP_812423.1| ATP-dependent Zn protease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092832|gb|ABJ57985.1| membrane protease FtsH catalytic subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 690 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F SG V A + L TN + + Sbjct: 178 VLLEGPPGTGKTLLAKAVAGEAGVPFFYISGSDFVEMFVGVGASRVRDLFTNAKKNAPSI 237 Query: 109 LFIDEI 114 +FIDEI Sbjct: 238 IFIDEI 243 >gi|329920997|ref|ZP_08277525.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN 1401G] gi|328935273|gb|EGG31753.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN 1401G] Length = 583 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 82 FRSTSGPVIAKAGDLAA 98 P + LAA Sbjct: 66 DSKDGEPCNQCSNCLAA 82 >gi|328858938|gb|EGG08049.1| peroxisome assembly protein Pex1p [Melampsora larici-populina 98AG31] Length = 915 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L G PG GKT LA VA+E G+NF S GP Sbjct: 680 LLLYGYPGCGKTMLASAVAKECGLNFISIKGP 711 >gi|323455708|gb|EGB11576.1| hypothetical protein AURANDRAFT_10538 [Aureococcus anophagefferens] Length = 574 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 8/89 (8%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 VE LK + K A+ VL GPPG GKT LA+ A E GV F STSG + Sbjct: 142 VEVVDFLKYPEKFTKVGAKTPRGVLLEGPPGTGKTLLARACAGEAGVPFISTSGSEFVEM 201 Query: 93 -AGDLAALLTNL------EDRDVLFIDEI 114 G A+ + NL ++FIDEI Sbjct: 202 FVGVGASRIRNLFGDAKKNAPCIIFIDEI 230 >gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens] Length = 747 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP +L+E + S L+ IEA K L H L GPPG GKT+ A+++ Sbjct: 428 VEKYRPSSLDELVAHKDIISVLRRLIEADK-----LPHTLLYGPPGTGKTSTILAAAKDM 482 Query: 79 -GVNFRS 84 G ++S Sbjct: 483 YGAGYKS 489 >gi|317505297|ref|ZP_07963226.1| ATP-dependent metalloprotease FtsH [Prevotella salivae DSM 15606] gi|315663600|gb|EFV03338.1| ATP-dependent metalloprotease FtsH [Prevotella salivae DSM 15606] Length = 683 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E GV F S SG V A + + +++ ++ Sbjct: 240 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDVFAQAKEKSPCII 299 Query: 110 FIDEI 114 FIDEI Sbjct: 300 FIDEI 304 >gi|312873576|ref|ZP_07733623.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2052A-d] gi|311090829|gb|EFQ49226.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF 2052A-d] Length = 587 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 15 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 69 Query: 82 FRSTSGPVIAKAGDLAA 98 P + LAA Sbjct: 70 DSKDGEPCNQCSNCLAA 86 >gi|307822781|ref|ZP_07653012.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum SV96] gi|307736385|gb|EFO07231.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum SV96] Length = 640 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 28/218 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 +L VGPPG GKT +A+ +A E GV F + SG V A + + ++ + Sbjct: 188 ILMVGPPGTGKTLIARAIAGEAGVKFFTISGSDFVEMFVGVGASRVRDMFAQAKEHAPCI 247 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT------LIAATTR 162 +FIDEI + D + + + + + F +IAAT R Sbjct: 248 IFIDEIDAVGRQRGGPGMGGGNDEREQTL-------NQLLVEMDGFNGNEGVIVIAATNR 300 Query: 163 VGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 +L L RF + + ++ + I+ K V A E+ +RGTP Sbjct: 301 ADVLDKALLRPGRFDRQVNVGLPDVRGREQILNVHIK----KVPAAADVELKYIARGTPG 356 Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258 +G L V + A + A++ +E+ + + L A DK+ Sbjct: 357 FSGADLANVVNEAALFAARSNKQEV-NMSDLEKAKDKI 393 >gi|296082901|emb|CBI22202.3| unnamed protein product [Vitis vinifera] Length = 657 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280 >gi|257458486|ref|ZP_05623623.1| DNA polymerase III, subunits gamma and tau [Treponema vincentii ATCC 35580] gi|257444083|gb|EEV19189.1| DNA polymerase III, subunits gamma and tau [Treponema vincentii ATCC 35580] Length = 416 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 17/113 (15%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+ E+ GQ + L+ IEA K + H LF GP G GKT+ A+++A+ L Sbjct: 11 RPQRFEDLLGQDFVAATLQKSIEAGK-----IAHAYLFSGPRGCGKTSSARILAKALNCE 65 Query: 82 FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYP 127 +G V G + +T DV+ ID S+ I +EIL+P Sbjct: 66 ----TGTVATPCGVCTSCCEITAGSSIDVIEIDGASNTSVNDVRQIKDEILFP 114 >gi|268680380|ref|YP_003304811.1| ATP-dependent metalloprotease FtsH [Sulfurospirillum deleyianum DSM 6946] gi|268618411|gb|ACZ12776.1| ATP-dependent metalloprotease FtsH [Sulfurospirillum deleyianum DSM 6946] Length = 643 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL VGPPG GKT LA+ VA E V F S SG V A + L N + + Sbjct: 221 VLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAI 280 Query: 109 LFIDEI 114 +FIDEI Sbjct: 281 VFIDEI 286 >gi|225452799|ref|XP_002283393.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 676 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280 >gi|225446693|ref|XP_002282107.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 694 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 268 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 298 >gi|215425127|ref|ZP_03423046.1| hypothetical protein MtubT9_01540 [Mycobacterium tuberculosis T92] gi|215432851|ref|ZP_03430770.1| hypothetical protein MtubE_19828 [Mycobacterium tuberculosis EAS054] gi|219559969|ref|ZP_03539045.1| hypothetical protein MtubT1_22617 [Mycobacterium tuberculosis T17] gi|260198923|ref|ZP_05766414.1| hypothetical protein MtubT4_01954 [Mycobacterium tuberculosis T46] gi|289441310|ref|ZP_06431054.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289572126|ref|ZP_06452353.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289748401|ref|ZP_06507779.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289756002|ref|ZP_06515380.1| ATPase [Mycobacterium tuberculosis EAS054] gi|289414229|gb|EFD11469.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289545881|gb|EFD49528.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289688988|gb|EFD56417.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289696589|gb|EFD64018.1| ATPase [Mycobacterium tuberculosis EAS054] Length = 573 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57 RE LL+ ++ D I L R + E +V A +KV A+ H+ Sbjct: 279 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 330 Query: 58 LFVGPPGLGKTTLAQVVA 75 +F GPPG GKTT+A+VVA Sbjct: 331 IFTGPPGTGKTTIARVVA 348 >gi|210623041|ref|ZP_03293528.1| hypothetical protein CLOHIR_01478 [Clostridium hiranonis DSM 13275] gi|210153844|gb|EEA84850.1| hypothetical protein CLOHIR_01478 [Clostridium hiranonis DSM 13275] Length = 627 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/30 (66%), Positives = 21/30 (70%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ VA E GV F S SG Sbjct: 202 LLVGPPGTGKTLLAKAVAGEAGVPFFSISG 231 >gi|153854743|ref|ZP_01995977.1| hypothetical protein DORLON_01975 [Dorea longicatena DSM 13814] gi|149752650|gb|EDM62581.1| hypothetical protein DORLON_01975 [Dorea longicatena DSM 13814] Length = 510 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F + SG Sbjct: 99 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 129 >gi|147834823|emb|CAN75012.1| hypothetical protein VITISV_034238 [Vitis vinifera] Length = 904 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 33/206 (16%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72 + + D+ + R + G V+ + ++ K + +A VL FVGPPG+GKT+LA Sbjct: 377 EHELDLRAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLAS 436 Query: 73 VVARELGVNFRSTSGPVIAKAGDL------------AALLTNLE----DRDVLFIDEIHR 116 +A LG F S + D+ L+ L+ V+ +DEI + Sbjct: 437 SIASALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIEGLKRVGVSNPVMLLDEIDK 496 Query: 117 LSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 V E+L P D + +V +LS+ +A RV + Sbjct: 497 TGSDVRGDPASALLEVLDPEQNKTFNDHYL-------NVPYDLSKVIFVATANRVQPIPP 549 Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL DR + I L Y E+ I R Sbjct: 550 PLLDRMEV-IELPGYTPEEKLKIAMR 574 >gi|147809607|emb|CAN73350.1| hypothetical protein VITISV_000418 [Vitis vinifera] Length = 694 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 268 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 298 >gi|118587402|ref|ZP_01544828.1| ATP-dependent Clp protease, ATP-binding subunit [Oenococcus oeni ATCC BAA-1163] gi|118432226|gb|EAV38966.1| ATP-dependent Clp protease, ATP-binding subunit [Oenococcus oeni ATCC BAA-1163] Length = 429 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 26/120 (21%) Query: 25 RTLEEFT-GQVEACSNLKVFIEAAKARA-EALDH----------VLFVGPPGLGKTTLAQ 72 + L E+ GQ EA L V + R E+L H +L +GP G GKT LAQ Sbjct: 80 KHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSGKTYLAQ 139 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118 +A+ L V F + +AG + + N+ R +++IDEI +++ Sbjct: 140 SLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQRGIIYIDEIDKIA 199 >gi|116309721|emb|CAH66766.1| OSIGBa0115M15.4 [Oryza sativa Indica Group] Length = 577 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 29/53 (54%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 VE S L + K A+ VL VGPPG GKT LA+ VA E G+ F S S Sbjct: 303 VEVVSCLHGSLNYKKLGAKLPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVS 355 >gi|162606098|ref|XP_001713564.1| CDC48 like protein [Guillardia theta] gi|13794484|gb|AAK39859.1|AF165818_67 CDC48 like protein [Guillardia theta] Length = 606 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT +A+ A+E G NF GP I Sbjct: 385 ILINGPPGCGKTMIAKAAAKESGANFSYIKGPEI 418 >gi|71064675|ref|YP_263402.1| recombination factor protein RarA [Psychrobacter arcticus 273-4] gi|71037660|gb|AAZ17968.1| Recombination protein MgsA [Psychrobacter arcticus 273-4] Length = 429 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 21/144 (14%) Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +RP TL+ GQ + + L+ +E L ++ G G+GKTT+A ++A + Sbjct: 15 MRPTTLDTIIGQEHLLAVGAPLRRLVEQGH-----LPSIILHGEAGIGKTTIAMLLADAV 69 Query: 79 GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131 G F + S A + L L+ +D V+FIDEIHR + ++ L A+E Sbjct: 70 GRPFHALS----ALNTGVKQLREVLDSKDSLSFESPVVFIDEIHRFNKAQQDALLGAVES 125 Query: 132 FQLDLM--VGEGPSARSVKINLSR 153 + L+ E PS LSR Sbjct: 126 GDITLIGATTENPSFSVNNALLSR 149 >gi|15611004|ref|NP_218385.1| hypothetical protein Rv3868 [Mycobacterium tuberculosis H37Rv] gi|15843498|ref|NP_338535.1| AAA family ATPase [Mycobacterium tuberculosis CDC1551] gi|148663735|ref|YP_001285258.1| hypothetical protein MRA_3907 [Mycobacterium tuberculosis H37Ra] gi|148825076|ref|YP_001289830.1| hypothetical protein TBFG_13903 [Mycobacterium tuberculosis F11] gi|167967458|ref|ZP_02549735.1| hypothetical protein MtubH3_05242 [Mycobacterium tuberculosis H37Ra] gi|215405924|ref|ZP_03418105.1| hypothetical protein Mtub0_19988 [Mycobacterium tuberculosis 02_1987] gi|215413796|ref|ZP_03422464.1| hypothetical protein Mtub9_20610 [Mycobacterium tuberculosis 94_M4241A] gi|218755654|ref|ZP_03534450.1| hypothetical protein MtubG1_20484 [Mycobacterium tuberculosis GM 1503] gi|253800918|ref|YP_003033920.1| hypothetical protein TBMG_03916 [Mycobacterium tuberculosis KZN 1435] gi|254233356|ref|ZP_04926682.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254366412|ref|ZP_04982456.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254548872|ref|ZP_05139319.1| hypothetical protein Mtube_00135 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289556137|ref|ZP_06445347.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289747711|ref|ZP_06507089.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289764058|ref|ZP_06523436.1| ATPase [Mycobacterium tuberculosis GM 1503] gi|297636553|ref|ZP_06954333.1| hypothetical protein MtubK4_20610 [Mycobacterium tuberculosis KZN 4207] gi|297733548|ref|ZP_06962666.1| hypothetical protein MtubKR_20755 [Mycobacterium tuberculosis KZN R506] gi|298527341|ref|ZP_07014750.1| ATPase, AAA family [Mycobacterium tuberculosis 94_M4241A] gi|306778761|ref|ZP_07417098.1| hypothetical protein TMBG_02408 [Mycobacterium tuberculosis SUMu002] gi|307086666|ref|ZP_07495779.1| hypothetical protein TMLG_00364 [Mycobacterium tuberculosis SUMu012] gi|313660879|ref|ZP_07817759.1| hypothetical protein MtubKV_20750 [Mycobacterium tuberculosis KZN V2475] gi|7388391|sp|O69733|ECCA1_MYCTU RecName: Full=ESX-1 secretion system protein EccA1; AltName: Full=ESX conserved component A1; AltName: Full=Type VII secretion system protein EccA1; Short=T7SS protein EccA1 gi|2960220|emb|CAA17960.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13883872|gb|AAK48349.1| ATPase, AAA family [Mycobacterium tuberculosis CDC1551] gi|124603149|gb|EAY61424.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134151924|gb|EBA43969.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148507887|gb|ABQ75696.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra] gi|148723603|gb|ABR08228.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|253322422|gb|ACT27025.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289440769|gb|EFD23262.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289688239|gb|EFD55727.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289711564|gb|EFD75580.1| ATPase [Mycobacterium tuberculosis GM 1503] gi|298497135|gb|EFI32429.1| ATPase, AAA family [Mycobacterium tuberculosis 94_M4241A] gi|308328243|gb|EFP17094.1| hypothetical protein TMBG_02408 [Mycobacterium tuberculosis SUMu002] gi|308363932|gb|EFP52783.1| hypothetical protein TMLG_00364 [Mycobacterium tuberculosis SUMu012] gi|323717451|gb|EGB26655.1| hypothetical protein TMMG_00363 [Mycobacterium tuberculosis CDC1551A] gi|326905704|gb|EGE52637.1| hypothetical protein TBPG_03666 [Mycobacterium tuberculosis W-148] gi|328460646|gb|AEB06069.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 573 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57 RE LL+ ++ D I L R + E +V A +KV A+ H+ Sbjct: 279 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 330 Query: 58 LFVGPPGLGKTTLAQVVA 75 +F GPPG GKTT+A+VVA Sbjct: 331 IFTGPPGTGKTTIARVVA 348 >gi|323304219|gb|EGA57994.1| Pex1p [Saccharomyces cerevisiae FostersB] Length = 902 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L G PG GKT LA VA++ G+NF S GP I Sbjct: 734 ILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEI 767 >gi|309810107|ref|ZP_07703953.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN 2503V10-D] gi|308169606|gb|EFO71653.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN 2503V10-D] Length = 583 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 82 FRSTSGPVIAKAGDLAA 98 P + LAA Sbjct: 66 DSKDGEPCNQCSNCLAA 82 >gi|260893890|ref|YP_003239987.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4] gi|260866031|gb|ACX53137.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4] Length = 639 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 46/95 (48%), Gaps = 11/95 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 EE VE N + F E A VL GPPG GKT +A+ VA E GV F S SG Sbjct: 169 EELQEIVEFLKNPRKFSELG---ARIPKGVLLYGPPGTGKTLIARAVAGEAGVPFFSISG 225 Query: 88 PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L ++ ++FIDEI Sbjct: 226 SDFVEMFVGVGAARVRDLFEQAKKNAPCIVFIDEI 260 >gi|240950345|ref|ZP_04754615.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus minor NM305] gi|240295156|gb|EER45975.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus minor NM305] Length = 414 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 117 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDA 176 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 177 EQAERGIVFIDEIDKIT 193 >gi|240104120|ref|YP_002960429.1| replication factor C large subunit [Thermococcus gammatolerans EJ3] gi|239911674|gb|ACS34565.1| Replication factor C, large subunit (rfcL) [Thermococcus gammatolerans EJ3] Length = 507 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTTLAQVVARE 77 + RPR L E Q +A ++ ++EA ++ GPPG+GKTT +A E Sbjct: 10 VEKYRPRKLSEIVNQEKAIEQVRAWVEAWLHGNPPKKKALILAGPPGVGKTTTVYALANE 69 Query: 78 LG 79 G Sbjct: 70 YG 71 >gi|260947222|ref|XP_002617908.1| hypothetical protein CLUG_01367 [Clavispora lusitaniae ATCC 42720] gi|238847780|gb|EEQ37244.1| hypothetical protein CLUG_01367 [Clavispora lusitaniae ATCC 42720] Length = 809 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 547 VLMWGPPGCGKTLLAKAVANESRANFISVKGP 578 Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKTT+A +A EL V F + S P + Sbjct: 221 VLLYGPPGCGKTTIANALAGELQVPFINISAPSV 254 >gi|218458415|ref|ZP_03498506.1| cell division protein ftsH (ATP-dependent zinc-metallo protease) [Rhizobium etli Kim 5] Length = 192 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV + S SG + G AA + +L ++ + Sbjct: 70 VLLVGPPGTGKTLLAKAVAGEAGVPYFSISGSEFVEMFVGVGAARVRDLFEQARAKAPAI 129 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 130 IFIDELDALG 139 >gi|182679146|ref|YP_001833292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beijerinckia indica subsp. indica ATCC 9039] gi|238691227|sp|B2IGP2|CLPX_BEII9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|182635029|gb|ACB95803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beijerinckia indica subsp. indica ATCC 9039] Length = 421 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|170745082|ref|YP_001766539.1| AAA family ATPase, CDC48 subfamily protein [Methylobacterium radiotolerans JCM 2831] gi|170658683|gb|ACB27737.1| AAA family ATPase, CDC48 subfamily [Methylobacterium radiotolerans JCM 2831] Length = 755 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 16/109 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77 T ++ G EA L+ +E +A + L GPPG GKT LA+ VARE Sbjct: 476 TWDDVGGLAEAQMRLREGVELPLRSPQAFRRIGIRPAKGFLLFGPPGTGKTLLAKAVARE 535 Query: 78 LGVNFRST-SGPVIAK-AGDLAALLTNLEDR------DVLFIDEIHRLS 118 NF +T S +++K G+ ++ L R V+FIDEI L+ Sbjct: 536 SDANFVATKSSDLLSKWYGESEQQVSRLFQRARQVAPTVIFIDEIDSLA 584 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E F +GP I ++ G+ L + + Sbjct: 243 VLLHGPPGTGKTRLARAVANETEARFFHIAGPEIMGSRYGESEQRLREVFQEAAQSAPSI 302 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ E++ Sbjct: 303 IFIDEIDSIAPKREQV 318 >gi|152990824|ref|YP_001356546.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2] gi|151422685|dbj|BAF70189.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2] Length = 552 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108 VL VGPPG+GKT +A+ VA E GV F SG + A + L ++ + Sbjct: 190 VLLVGPPGVGKTLIAKAVAGEAGVPFFYQSGSAFVQIYVGMGAKRVRELFKKAKEMAPSI 249 Query: 109 LFIDEI 114 +FIDEI Sbjct: 250 VFIDEI 255 >gi|147852346|emb|CAN80115.1| hypothetical protein VITISV_032527 [Vitis vinifera] Length = 676 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280 >gi|126458632|ref|YP_001054910.1| replication factor C large subunit [Pyrobaculum calidifontis JCM 11548] gi|158513487|sp|A3MS27|RFCL_PYRCJ RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|126248353|gb|ABO07444.1| transcriptional regulator, Fis family [Pyrobaculum calidifontis JCM 11548] Length = 421 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 15/72 (20%) Query: 23 RPRTLEEFTGQVEA--------CSNLKVFIEAAKARAEALDH-------VLFVGPPGLGK 67 RP++ E Q EA C+ K E A+ D VL GPPG+GK Sbjct: 10 RPKSFSEIVNQEEAKQILASWICTRFKAPQEFCARWAKRRDKEIKEARAVLLWGPPGIGK 69 Query: 68 TTLAQVVARELG 79 TTL +A+E+G Sbjct: 70 TTLVHALAKEIG 81 >gi|119599729|gb|EAW79323.1| RuvB-like 1 (E. coli) [Homo sapiens] Length = 404 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|323333485|gb|EGA74879.1| Msp1p [Saccharomyces cerevisiae AWRI796] Length = 361 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNL 103 +A VL GPPG GKT LA+ +A+E G NF S I K D L N Sbjct: 124 QAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANK 183 Query: 104 EDRDVLFIDEI 114 ++FIDEI Sbjct: 184 LQPCIIFIDEI 194 >gi|322515315|ref|ZP_08068312.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus ureae ATCC 25976] gi|322118691|gb|EFX90903.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus ureae ATCC 25976] Length = 419 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 118 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDA 177 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 178 EQAERGIVFIDEIDKIT 194 >gi|319399668|gb|EFV87922.1| putative ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis FRI909] Length = 700 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|307293096|ref|ZP_07572942.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingobium chlorophenolicum L-1] gi|306881162|gb|EFN12378.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingobium chlorophenolicum L-1] Length = 422 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +A+ V F + +AG + + N+ Sbjct: 111 AKSNILLVGPTGCGKTLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 170 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 171 YNVEKAQRGIVYIDEIDKIS 190 >gi|289551690|ref|YP_003472594.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01] gi|315660321|ref|ZP_07913174.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis M23590] gi|289181221|gb|ADC88466.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01] gi|315494610|gb|EFU82952.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis M23590] Length = 695 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|260184797|ref|ZP_05762271.1| hypothetical protein MtubCP_01892 [Mycobacterium tuberculosis CPHL_A] gi|289445470|ref|ZP_06435214.1| ATPase [Mycobacterium tuberculosis CPHL_A] gi|289418428|gb|EFD15629.1| ATPase [Mycobacterium tuberculosis CPHL_A] Length = 573 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57 RE LL+ ++ D I L R + E +V A +KV A+ H+ Sbjct: 279 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 330 Query: 58 LFVGPPGLGKTTLAQVVA 75 +F GPPG GKTT+A+VVA Sbjct: 331 IFTGPPGTGKTTIARVVA 348 >gi|257068143|ref|YP_003154398.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brachybacterium faecium DSM 4810] gi|256558961|gb|ACU84808.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brachybacterium faecium DSM 4810] Length = 444 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 15/97 (15%) Query: 36 ACSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 A ++L +++ R E A +V+ VGP G GKT LAQ +AR L V F + +AG Sbjct: 113 AAASLAEEVDSEDDRIEVAKSNVMLVGPTGCGKTYLAQTLARMLDVPFTMADATALTEAG 172 Query: 95 ----DLAALLTNL---EDRDV-------LFIDEIHRL 117 D+ +L L D DV ++IDEI ++ Sbjct: 173 YVGEDVENILLKLLQAADYDVKKAEHGIIYIDEIDKI 209 >gi|225021670|ref|ZP_03710862.1| hypothetical protein CORMATOL_01698 [Corynebacterium matruchotii ATCC 33806] gi|305681341|ref|ZP_07404148.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium matruchotii ATCC 14266] gi|224945661|gb|EEG26870.1| hypothetical protein CORMATOL_01698 [Corynebacterium matruchotii ATCC 33806] gi|305659546|gb|EFM49046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium matruchotii ATCC 14266] Length = 427 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 38/152 (25%) Query: 5 EGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD---- 55 E L + QED L RP + F GQ EA L V + R A D Sbjct: 48 EELAKSSKPQEDQTTGLPRPSEIAAFLDKYVVGQDEAKRILAVAVYNHYKRVRAEDARTL 107 Query: 56 ---------------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DL 96 ++L +GP G GKT LAQ +AR L V F + +AG D+ Sbjct: 108 GGRKYRDDDTELQKSNILMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDV 167 Query: 97 AALLTNL----------EDRDVLFIDEIHRLS 118 +L L R ++++DE+ ++S Sbjct: 168 ENILLKLLQAADFDVQRAQRGIIYVDEVDKIS 199 >gi|223044433|ref|ZP_03614466.1| putative ATP-dependent metallopeptidase HflB subfamily [Staphylococcus capitis SK14] gi|222442222|gb|EEE48334.1| putative ATP-dependent metallopeptidase HflB subfamily [Staphylococcus capitis SK14] Length = 711 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|220908960|ref|YP_002484271.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] gi|219865571|gb|ACL45910.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] Length = 631 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL +GPPG GKT LA+ +A E GV F S SG V A + L +D + Sbjct: 202 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCL 261 Query: 109 LFIDEI 114 +FIDEI Sbjct: 262 VFIDEI 267 >gi|254410318|ref|ZP_05024097.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] gi|196182524|gb|EDX77509.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] Length = 627 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 208 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 238 >gi|195976596|dbj|BAG68527.1| katanin p60 [Vigna angularis] Length = 259 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 47 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 106 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 107 IFIDEIDSL 115 >gi|167565768|ref|ZP_02358684.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia oklahomensis EO147] Length = 663 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VG PG GKT LA+ VA E GV F STSG + G AA + +L ++ + Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 266 IFIDEL 271 >gi|165976698|ref|YP_001652291.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876799|gb|ABY69847.1| ATP-dependent Clp protease, ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 378 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 77 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDA 136 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 137 EQAERGIVFIDEIDKIT 153 >gi|146341126|ref|YP_001206174.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp. ORS278] gi|166214759|sp|A4YVM3|CLPX_BRASO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|146193932|emb|CAL77949.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium sp. ORS278] Length = 424 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|134094957|ref|YP_001100032.1| ATP-dependent protease ATP-binding subunit ClpX [Herminiimonas arsenicoxydans] gi|166214778|sp|A4G5X0|CLPX_HERAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|133738860|emb|CAL61907.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Herminiimonas arsenicoxydans] Length = 422 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104 A ++L VGP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 112 AKSNILLVGPTGSGKTLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 171 Query: 105 ------DRDVLFIDEIHRLS 118 + +++IDEI ++S Sbjct: 172 YEVERAQKGIVYIDEIDKIS 191 >gi|159040235|ref|YP_001539488.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205] gi|157919070|gb|ABW00498.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205] Length = 669 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ A+ +AL VL GPPG GKT LA+ VA E GV F S SG Sbjct: 181 VEELHEIKDFLQN-PAKYQALGAKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISG 238 >gi|113954954|ref|YP_730623.1| metalloprotease ATP-dependent, FtsH family protein [Synechococcus sp. CC9311] gi|113882305|gb|ABI47263.1| metalloprotease, ATP-dependent, FtsH family protein [Synechococcus sp. CC9311] Length = 643 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 223 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 253 >gi|92117751|ref|YP_577480.1| ATP-dependent protease ATP-binding subunit ClpX [Nitrobacter hamburgensis X14] gi|122417675|sp|Q1QL77|CLPX_NITHX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|91800645|gb|ABE63020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrobacter hamburgensis X14] Length = 424 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|75676089|ref|YP_318510.1| ATP-dependent protease ATP-binding subunit [Nitrobacter winogradskyi Nb-255] gi|123773227|sp|Q3SRD3|CLPX_NITWN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|74420959|gb|ABA05158.1| ClpX, ATPase regulatory subunit [Nitrobacter winogradskyi Nb-255] Length = 424 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|27469190|ref|NP_765827.1| cell-division protein [Staphylococcus epidermidis ATCC 12228] gi|57866073|ref|YP_187746.1| cell division protein FtsH [Staphylococcus epidermidis RP62A] gi|242241596|ref|ZP_04796041.1| cell division protein FtsH [Staphylococcus epidermidis W23144] gi|251809818|ref|ZP_04824291.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060] gi|282875442|ref|ZP_06284314.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis SK135] gi|293366153|ref|ZP_06612840.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis M23864:W2(grey)] gi|27316739|gb|AAO05914.1|AE016751_209 cell-division protein [Staphylococcus epidermidis ATCC 12228] gi|57636731|gb|AAW53519.1| cell division protein FtsH, putative [Staphylococcus epidermidis RP62A] gi|242234977|gb|EES37288.1| cell division protein FtsH [Staphylococcus epidermidis W23144] gi|251806686|gb|EES59343.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060] gi|281295799|gb|EFA88321.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis SK135] gi|291319747|gb|EFE60106.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis M23864:W2(grey)] gi|329723965|gb|EGG60490.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis VCU144] gi|329733033|gb|EGG69372.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis VCU028] gi|329737911|gb|EGG74139.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis VCU045] Length = 700 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|28201889|sp|Q9DE26|RUVB1_XENLA RecName: Full=RuvB-like 1; AltName: Full=Pontin gi|12004636|gb|AAG44127.1|AF218072_1 pontin [Xenopus laevis] Length = 456 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 EAC V +E K++ A VL GPPG GKT LA +A+ELG Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 >gi|159903386|ref|YP_001550730.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9211] gi|159888562|gb|ABX08776.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9211] Length = 637 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|148255922|ref|YP_001240507.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp. BTAi1] gi|166214758|sp|A5EKA7|CLPX_BRASB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|146408095|gb|ABQ36601.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bradyrhizobium sp. BTAi1] Length = 424 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|314932733|ref|ZP_07840103.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87] gi|313654563|gb|EFS18315.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87] Length = 711 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 IFIDEI 266 >gi|307243201|ref|ZP_07525374.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis DSM 17678] gi|306493462|gb|EFM65442.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis DSM 17678] Length = 680 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 +L VGPPG GKT L++ VA E GV F S SG + G A+ + +L E + Sbjct: 200 ILMVGPPGTGKTYLSKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKESPAI 259 Query: 109 LFIDEI 114 +FIDEI Sbjct: 260 VFIDEI 265 >gi|303389385|ref|XP_003072925.1| transitional endoplasmic reticulum ATPase [Encephalitozoon intestinalis ATCC 50506] gi|303302068|gb|ADM11565.1| transitional endoplasmic reticulum ATPase [Encephalitozoon intestinalis ATCC 50506] Length = 506 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 +L GPPG GKT L + V+ NF S GP +I+K GD + L D+ V Sbjct: 299 ILLYGPPGCGKTLLVRAVSNMSHCNFLSIKGPELISKYVGDSEKEIRKLFDKAKQLQPCV 358 Query: 109 LFIDEIHRLS 118 LF DEI L Sbjct: 359 LFFDEIDSLC 368 >gi|302386738|ref|YP_003822560.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium saccharolyticum WM1] gi|302197366|gb|ADL04937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium saccharolyticum WM1] Length = 433 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 28/130 (21%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA---EALD------HVLFVGP 62 DI+L++P+ ++ F GQ A L V + R + +D ++L +GP Sbjct: 60 GDINLMKPKEIKAFLDDYVIGQDNAKKVLSVAVYNHYKRITSRKKMDVDVQKSNILMLGP 119 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------V 108 G GKT LAQ +A+ L V F + +AG D+ +L L D D + Sbjct: 120 TGSGKTYLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDISRAEYGI 179 Query: 109 LFIDEIHRLS 118 ++IDEI +++ Sbjct: 180 IYIDEIDKIT 189 >gi|196005443|ref|XP_002112588.1| hypothetical protein TRIADDRAFT_25144 [Trichoplax adhaerens] gi|190584629|gb|EDV24698.1| hypothetical protein TRIADDRAFT_25144 [Trichoplax adhaerens] Length = 496 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + TS + +K GD L + Sbjct: 251 VLMVGPPGTGKTLLAKAVATECGTTFFNVTSSTLTSKYRGDSEKLVRLLFEMARFYAPST 310 Query: 109 LFIDEI 114 +FIDEI Sbjct: 311 IFIDEI 316 >gi|270003418|gb|EEZ99865.1| hypothetical protein TcasGA2_TC002647 [Tribolium castaneum] Length = 668 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT +A+ VA E G+ F S GP Sbjct: 426 ILLYGPPGTGKTLIAKAVATECGLCFLSVKGP 457 >gi|126324700|ref|XP_001375103.1| PREDICTED: similar to Replication factor C subunit 5 (Replication factor C 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Activator 1 36 kDa subunit) (A1 36 kDa subunit) [Monodelphis domestica] Length = 342 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL+E + S ++ FI + L H+L GPPG GKT+ AR+L Sbjct: 29 RPQTLDELISHQDILSTIQKFISEDR-----LPHLLLYGPPGTGKTSTILACARQL 79 >gi|157671927|ref|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapiens] gi|308153554|sp|Q8NB90|SPAT5_HUMAN RecName: Full=Spermatogenesis-associated protein 5; AltName: Full=ATPase family protein 2 homolog; AltName: Full=Spermatogenesis-associated factor protein gi|119625621|gb|EAX05216.1| spermatogenesis associated 5, isoform CRA_d [Homo sapiens] Length = 893 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 450 IFIDELDALC 459 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695 >gi|117644704|emb|CAL37817.1| hypothetical protein [synthetic construct] Length = 893 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 450 IFIDELDALC 459 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695 >gi|308807567|ref|XP_003081094.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri] gi|116059556|emb|CAL55263.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri] Length = 342 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+T+ + Q + L+ +E + H LF GPPG GKTT A +A++L Sbjct: 19 VEKYRPKTVRDVASQEQVVRVLEQALETGN-----MPHCLFYGPPGTGKTTCALAIAKQL 73 >gi|126700923|ref|YP_001089820.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile 630] gi|254976903|ref|ZP_05273375.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-66c26] gi|255094289|ref|ZP_05323767.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile CIP 107932] gi|255102471|ref|ZP_05331448.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-63q42] gi|255308376|ref|ZP_05352547.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile ATCC 43255] gi|255316043|ref|ZP_05357626.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-76w55] gi|255518700|ref|ZP_05386376.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-97b34] gi|255651822|ref|ZP_05398724.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-37x79] gi|255657262|ref|ZP_05402671.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-23m63] gi|260684848|ref|YP_003216133.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile CD196] gi|260688506|ref|YP_003219640.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile R20291] gi|296451897|ref|ZP_06893614.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium difficile NAP08] gi|296879708|ref|ZP_06903683.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium difficile NAP07] gi|306521609|ref|ZP_07407956.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-32g58] gi|123066426|sp|Q180E8|CLPX_CLOD6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|115252360|emb|CAJ70201.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium difficile] gi|260211011|emb|CBA66322.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium difficile CD196] gi|260214523|emb|CBE07037.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium difficile R20291] gi|296259279|gb|EFH06157.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium difficile NAP08] gi|296429297|gb|EFH15169.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium difficile NAP07] Length = 416 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 111 NILLLGPTGSGKTLLAQTLARTLNVPFAMADATSLTEAGYVGEDVENILLKLIQAADFDI 170 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 171 EKAERGIIYIDEIDKIA 187 >gi|78776658|ref|YP_392973.1| AAA ATPase [Sulfurimonas denitrificans DSM 1251] gi|78497198|gb|ABB43738.1| AAA ATPase [Sulfurimonas denitrificans DSM 1251] Length = 725 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 42/229 (18%) Query: 6 GLLSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLF 59 G+ ++ VS+ D +SL L+ + GQ +A + I+ +KA + + LF Sbjct: 416 GISNQKVSK-DETLSLINLQESLKQRVIGQDKAVEEVTKAIKISKAGLTPEGKPIASFLF 474 Query: 60 VGPPGLGKTTLAQVVARELGVNFR------------------STSGPVIAKAGDLAALLT 101 GP G+GKT LA ++ LGVNF + G V + G L Sbjct: 475 SGPTGVGKTELALSLSEILGVNFERFDMSEYMEKHALSRLIGAPPGYVGYEQGGLLTEAI 534 Query: 102 NLEDRDVLFIDEIHRLSIIVEEILYPAME------------DFQ---LDLMVGEGPSARS 146 VL +DEI + + IL M+ +FQ L + G +ARS Sbjct: 535 KKHPYSVLLLDEIEKAHPDLVNILLQIMDNATLTDNNGYKANFQNVILIMTSNVGATARS 594 Query: 147 VKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194 V + ++ + +A + L P ++R + N +IE +K IV++ Sbjct: 595 V-MGFNKDSSLAKNEELKLFFTPEFRNRLSAIVEFNQLDIEIVKNIVKK 642 >gi|124808388|ref|XP_001348299.1| AAA family ATPase, putative [Plasmodium falciparum 3D7] gi|23497191|gb|AAN36738.1| AAA family ATPase, putative [Plasmodium falciparum 3D7] Length = 1219 Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Query: 48 KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED 105 K E+ +L GPPG KT A+ +A E+ +NF S GP I G+ + N+ Sbjct: 863 KYNIESPKGILLYGPPGCSKTLFAKAIASEIHMNFISVKGPEIFSKYVGESEKSIRNIFK 922 Query: 106 RD------VLFIDEIHRLSI 119 + V+F DEI +++ Sbjct: 923 KARENHPCVIFFDEIDSIAV 942 >gi|30584409|gb|AAP36457.1| Homo sapiens RuvB-like 1 (E. coli) [synthetic construct] gi|60652563|gb|AAX28976.1| RuvB-like 1 [synthetic construct] Length = 457 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|9790083|ref|NP_062659.1| ruvB-like 1 [Mus musculus] gi|22208848|ref|NP_671706.1| ruvB-like 1 [Rattus norvegicus] gi|38605681|sp|P60123|RUVB1_RAT RecName: Full=RuvB-like 1; AltName: Full=49 kDa TATA box-binding protein-interacting protein; Short=49 kDa TBP-interacting protein; AltName: Full=DNA helicase p50; AltName: Full=Pontin 52; AltName: Full=TIP49a gi|38605687|sp|P60122|RUVB1_MOUSE RecName: Full=RuvB-like 1; AltName: Full=49 kDa TATA box-binding protein-interacting protein; Short=49 kDa TBP-interacting protein; AltName: Full=DNA helicase p50; AltName: Full=Pontin 52; AltName: Full=TIP49a gi|2225877|dbj|BAA20875.1| TIP49 [Rattus norvegicus] gi|4106528|gb|AAD02877.1| Pontin52 [Mus musculus] gi|4521276|dbj|BAA76313.1| DNA helicase p50 [Rattus norvegicus] gi|13435708|gb|AAH04718.1| RuvB-like protein 1 [Mus musculus] gi|48734829|gb|AAH72511.1| RuvB-like 1 (E. coli) [Rattus norvegicus] gi|55824715|gb|AAH86531.1| RuvB-like 1 (E. coli) [Rattus norvegicus] gi|74210174|dbj|BAE21358.1| unnamed protein product [Mus musculus] gi|74217681|dbj|BAE33576.1| unnamed protein product [Mus musculus] gi|148666833|gb|EDK99249.1| mCG130614 [Mus musculus] gi|149036694|gb|EDL91312.1| rCG56325 [Rattus norvegicus] Length = 456 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|90423894|ref|YP_532264.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris BisB18] gi|115524518|ref|YP_781429.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris BisA53] gi|122296221|sp|Q07NN5|CLPX_RHOP5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|122476340|sp|Q215J1|CLPX_RHOPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|90105908|gb|ABD87945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris BisB18] gi|115518465|gb|ABJ06449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris BisA53] Length = 424 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|134115096|ref|XP_773846.1| hypothetical protein CNBH2980 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256474|gb|EAL19199.1| hypothetical protein CNBH2980 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1210 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F E K R+ +L GPPG GKT LA+ VA +NF S GP Sbjct: 891 EMFGEGLKKRS----GILLYGPPGTGKTLLAKAVATSFSLNFFSVKGP 934 >gi|332817809|ref|XP_003310033.1| PREDICTED: ruvB-like 1 isoform 2 [Pan troglodytes] Length = 386 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|328771029|gb|EGF81070.1| hypothetical protein BATDEDRAFT_35044 [Batrachochytrium dendrobatidis JAM81] Length = 1124 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT +A+ VA L +NF S GP Sbjct: 838 ILLYGPPGTGKTLVAKAVATTLSLNFFSVKGP 869 >gi|323354219|gb|EGA86063.1| Pex1p [Saccharomyces cerevisiae VL3] Length = 902 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L G PG GKT LA VA++ G+NF S GP I Sbjct: 734 ILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEI 767 >gi|323304947|gb|EGA58704.1| Msp1p [Saccharomyces cerevisiae FostersB] Length = 361 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNL 103 +A VL GPPG GKT LA+ +A+E G NF S I K D L N Sbjct: 124 QAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANK 183 Query: 104 EDRDVLFIDEI 114 ++FIDEI Sbjct: 184 LQPCIIFIDEI 194 >gi|298243866|ref|ZP_06967673.1| ATP-dependent protease La [Ktedonobacter racemifer DSM 44963] gi|297556920|gb|EFH90784.1| ATP-dependent protease La [Ktedonobacter racemifer DSM 44963] Length = 869 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 41/167 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L +AR LG F R + G + +A G + L Sbjct: 412 LCFVGPPGVGKTSLGHSIARSLGRKFARISLGGIRDEAEVRGHRRTYIGAMPGRIIQTLR 471 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAME----DFQLDLMVGEGPSARSVK 148 ++ D V+ +DE+ ++ S + E+L P D LDL Sbjct: 472 RVDSNDPVIMLDEVDKVGADWRGDPSSALLEVLDPEQNYNFRDNYLDL-----------P 520 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +LS+ IA + + PL+DR I + L+ Y ED K + R Sbjct: 521 FDLSKVMFIATANSLEPIPAPLRDRMEI-LELSGY-TEDQKVHIARN 565 >gi|294011931|ref|YP_003545391.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sphingobium japonicum UT26S] gi|292675261|dbj|BAI96779.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sphingobium japonicum UT26S] Length = 422 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +A+ V F + +AG + + N+ Sbjct: 111 AKSNILLVGPTGCGKTLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 170 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 171 YNVEKAQRGIVYIDEIDKIS 190 >gi|295689636|ref|YP_003593329.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Caulobacter segnis ATCC 21756] gi|295431539|gb|ADG10711.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter segnis ATCC 21756] Length = 420 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 110 AKSNILLVGPTGTGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|261403255|ref|YP_003247479.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] gi|261370248|gb|ACX72997.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] Length = 371 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 12/100 (12%) Query: 27 LEEFTGQVEA---CSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 E GQ EA C + ++E + + A +VLF GPPG GKT +A+ +A E +F Sbjct: 123 FSEIVGQEEAKKKCRIIMKYLEDPELFGDWAPKNVLFYGPPGTGKTLMARALATETNSSF 182 Query: 83 RSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEI 114 P + GD + ++ L + V+FIDE+ Sbjct: 183 ILVKAPELIGEHVGDASKMIRELYQKASENAPCVVFIDEL 222 >gi|242024677|ref|XP_002432753.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518238|gb|EEB20015.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 483 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S I G+ L + Sbjct: 239 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTITSKYRGESEKLVRLLFEMARFYSPST 298 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 299 IFIDELDAL 307 >gi|297620228|ref|YP_003708333.1| AAA ATPase central domain-containing protein [Methanococcus voltae A3] gi|297379205|gb|ADI37360.1| AAA ATPase central domain protein [Methanococcus voltae A3] Length = 510 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 11/109 (10%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+++ + GQ + L +IE +L GPPG GKTTLA +A + Sbjct: 4 VEKYRPKSMNDVAGQNKTKEQLITWIEEYIQNGGYHKPLLLAGPPGCGKTTLAYALANDY 63 Query: 79 GVNFR--------STSGPVIAKAGDLAALLTNLEDRDVLFI-DEIHRLS 118 NF + VI + AA+ +L R L I DE+ LS Sbjct: 64 --NFEVIELNASDKRNKNVIQQVVGTAAVSKSLSGRRSLIILDEVDGLS 110 >gi|145596817|ref|YP_001161114.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440] gi|145306154|gb|ABP56736.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440] Length = 671 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ A+ +AL VL GPPG GKT LA+ VA E GV F S SG Sbjct: 183 VEELHEIKDFLQN-PAKYQALGAKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISG 240 >gi|126336241|ref|XP_001366708.1| PREDICTED: similar to TIP49 [Monodelphis domestica] Length = 456 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|148270735|ref|YP_001245195.1| ATPase [Thermotoga petrophila RKU-1] gi|281413040|ref|YP_003347119.1| ATPase associated with various cellular activities AAA_3 [Thermotoga naphthophila RKU-10] gi|147736279|gb|ABQ47619.1| ATPase associated with various cellular activities, AAA_3 [Thermotoga petrophila RKU-1] gi|281374143|gb|ADA67705.1| ATPase associated with various cellular activities AAA_3 [Thermotoga naphthophila RKU-10] Length = 305 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 68/159 (42%), Gaps = 30/159 (18%) Query: 44 IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL 103 IEA A A HVL PG+GKT LA+ +A LGV+FR DL L + Sbjct: 20 IEAVVAALLAKGHVLMEDVPGVGKTMLARALAISLGVDFRRVQFTPDLLPTDLTGLY--I 77 Query: 104 EDR--------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149 DR DVL DEI+R + + L AM + Q+ + + Sbjct: 78 YDRKKEDFVFKKGPVFTDVLLADEINRATPRTQSALLEAMAEGQV--------TVDGITH 129 Query: 150 NLS-RFTLIAATTRVGLL-TNPLQ----DRFGIPIRLNF 182 LS RF +IA + T PL DRF I +++ + Sbjct: 130 KLSERFFVIATQNPIEYEGTFPLPEAQLDRFMICVKMGY 168 >gi|113970829|ref|YP_734622.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp. MR-4] gi|114048054|ref|YP_738604.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp. MR-7] gi|123131263|sp|Q0HTK8|CLPX_SHESR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123324884|sp|Q0HHA2|CLPX_SHESM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|113885513|gb|ABI39565.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella sp. MR-4] gi|113889496|gb|ABI43547.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella sp. MR-7] Length = 426 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|108805004|ref|YP_644941.1| FtsH-2 peptidase [Rubrobacter xylanophilus DSM 9941] gi|108766247|gb|ABG05129.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Rubrobacter xylanophilus DSM 9941] Length = 627 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFIEA----AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 V+ + +K F+E K A L VGPPG GKT LA+ VA E GV F S SG Sbjct: 174 VQELTEIKEFLENPQKFQKLGARIPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISG 231 >gi|50303727|ref|XP_451808.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49640940|emb|CAH02201.1| KLLA0B06094p [Kluyveromyces lactis] Length = 360 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 15/122 (12%) Query: 6 GLLSRNVSQEDADISLLR----PRTLEEFTGQV-EACSNLKVFIEAAKARAEALDHVLFV 60 +L+ ++ +D D+S +EE T V ++ ++F E+A EA VL Sbjct: 75 SVLASVITPQDIDVSFEDIGGLEDVIEELTESVIYPLTSPEIFSESA--LLEAPKGVLLY 132 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDVLFID 112 GPPG GKT +A+ +A E G NF S I K D L N ++FID Sbjct: 133 GPPGCGKTMIAKALAHESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKIQPCIIFID 192 Query: 113 EI 114 EI Sbjct: 193 EI 194 >gi|31795042|ref|NP_857535.1| hypothetical protein Mb3898 [Mycobacterium bovis AF2122/97] gi|121639786|ref|YP_980010.1| hypothetical protein BCG_3931 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224992281|ref|YP_002646971.1| hypothetical protein JTY_3933 [Mycobacterium bovis BCG str. Tokyo 172] gi|31620640|emb|CAD96084.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121495434|emb|CAL73921.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224775397|dbj|BAH28203.1| hypothetical protein JTY_3933 [Mycobacterium bovis BCG str. Tokyo 172] Length = 573 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57 RE LL+ ++ D I L R + E +V A +KV A+ H+ Sbjct: 279 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 330 Query: 58 LFVGPPGLGKTTLAQVVA 75 +F GPPG GKTT+A+VVA Sbjct: 331 IFTGPPGTGKTTIARVVA 348 >gi|4506753|ref|NP_003698.1| ruvB-like 1 [Homo sapiens] gi|73984468|ref|XP_848712.1| PREDICTED: similar to RuvB-like protein 1 isoform 2 [Canis familiaris] gi|73984478|ref|XP_857049.1| PREDICTED: similar to RuvB-like protein 1 isoform 6 [Canis familiaris] gi|291393338|ref|XP_002713193.1| PREDICTED: RuvB-like 1 [Oryctolagus cuniculus] gi|296225998|ref|XP_002758741.1| PREDICTED: ruvB-like 1 isoform 1 [Callithrix jacchus] gi|297263177|ref|XP_002798758.1| PREDICTED: ruvB-like 1-like [Macaca mulatta] gi|301764525|ref|XP_002917679.1| PREDICTED: ruvB-like 1-like [Ailuropoda melanoleuca] gi|332261767|ref|XP_003279938.1| PREDICTED: ruvB-like 1 [Nomascus leucogenys] gi|332817807|ref|XP_003310032.1| PREDICTED: ruvB-like 1 isoform 1 [Pan troglodytes] gi|28201891|sp|Q9Y265|RUVB1_HUMAN RecName: Full=RuvB-like 1; AltName: Full=49 kDa TATA box-binding protein-interacting protein; Short=49 kDa TBP-interacting protein; AltName: Full=54 kDa erythrocyte cytosolic protein; Short=ECP-54; AltName: Full=INO80 complex subunit H; AltName: Full=Nuclear matrix protein 238; Short=NMP 238; AltName: Full=Pontin 52; AltName: Full=TIP49a; AltName: Full=TIP60-associated protein 54-alpha; Short=TAP54-alpha gi|118137422|pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1 gi|118137423|pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1 gi|118137424|pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1 gi|21305114|gb|AAM45570.1|AF380344_1 pontin 52 [Homo sapiens] gi|3132308|dbj|BAA28169.1| TIP49 [Homo sapiens] gi|3243035|gb|AAC77819.1| RuvB-like protein RUVBL1 [Homo sapiens] gi|3892584|emb|CAA08986.1| Nuclear matrix protein NMP238 [Homo sapiens] gi|4151525|gb|AAD04427.1| Pontin52 [Homo sapiens] gi|5327000|emb|CAB46271.1| erythrocyte cytosolic protein of 54 kDa, ECP-54 [Homo sapiens] gi|12804269|gb|AAH02993.1| RuvB-like 1 (E. coli) [Homo sapiens] gi|15277588|gb|AAH12886.1| RuvB-like 1 (E. coli) [Homo sapiens] gi|30582953|gb|AAP35706.1| RuvB-like 1 (E. coli) [Homo sapiens] gi|60655669|gb|AAX32398.1| RuvB-like 1 [synthetic construct] gi|60655671|gb|AAX32399.1| RuvB-like 1 [synthetic construct] gi|123981090|gb|ABM82374.1| RuvB-like 1 (E. coli) [synthetic construct] gi|123995903|gb|ABM85553.1| RuvB-like 1 (E. coli) [synthetic construct] gi|189055333|dbj|BAG35217.1| unnamed protein product [Homo sapiens] gi|197692149|dbj|BAG70038.1| RuvB-like 1 [Homo sapiens] gi|281347005|gb|EFB22589.1| hypothetical protein PANDA_006025 [Ailuropoda melanoleuca] gi|307684682|dbj|BAJ20381.1| RuvB-like 1 [synthetic construct] Length = 456 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|19173654|ref|NP_597457.1| TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE [Encephalitozoon cuniculi GB-M1] gi|19170860|emb|CAD26634.1| TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE [Encephalitozoon cuniculi GB-M1] Length = 506 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 +L GPPG GKT L + V+ NF S GP +I+K GD + L D+ V Sbjct: 299 ILLYGPPGCGKTLLVRAVSNMSHCNFLSIKGPELISKYVGDSEKEIRKLFDKAKQLQPCV 358 Query: 109 LFIDEIHRLS 118 LF DEI L Sbjct: 359 LFFDEIDSLC 368 >gi|85716434|ref|ZP_01047406.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp. Nb-311A] gi|85696791|gb|EAQ34677.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp. Nb-311A] Length = 400 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 86 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 145 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 146 YNVERAQRGIVYIDEIDKIS 165 >gi|302335826|ref|YP_003801033.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084] gi|301319666|gb|ADK68153.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084] Length = 633 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 46/105 (43%), Gaps = 17/105 (16%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ GQ EA +L+ + K A L VGPPG GKT LA+ VA E Sbjct: 179 TFKDVAGQDEAKESLQEIVSFLKNPDKYTEIGARCPRGALLVGPPGTGKTLLAKAVAGEA 238 Query: 79 GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEI 114 GV F SG AK DL N + ++FIDEI Sbjct: 239 GVTFFQISGSEFVEMFVGRGAAKVRDLFK-EANKKAPCIIFIDEI 282 >gi|300863957|ref|ZP_07108871.1| FtsH peptidase [Oscillatoria sp. PCC 6506] gi|300338031|emb|CBN54017.1| FtsH peptidase [Oscillatoria sp. PCC 6506] Length = 640 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 247 >gi|297674296|ref|XP_002815167.1| PREDICTED: spermatogenesis-associated protein 5-like isoform 1 [Pongo abelii] Length = 892 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 389 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 448 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 449 IFIDELDALC 458 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 663 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 694 >gi|298242533|ref|ZP_06966340.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM 44963] gi|297555587|gb|EFH89451.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM 44963] Length = 616 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----V 108 VL VG PG GKT +++ VA E GV+F S SG + G AA + +L E +D + Sbjct: 220 VLLVGAPGTGKTLISRAVAGEAGVSFYSVSGSEFVEMFVGVGAARVRDLFKEAKDHSPCI 279 Query: 109 LFIDEI 114 +FIDEI Sbjct: 280 IFIDEI 285 >gi|296282012|ref|ZP_06860010.1| cell division cycle protein [Citromicrobium bathyomarinum JL354] Length = 769 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG------DLAALLTNLEDR--DV 108 VL GPPG GKT LAQ VA E F + +GP I +G L + N + Sbjct: 243 VLLHGPPGTGKTRLAQAVANESDAEFFAINGPEIMGSGYGESEKRLREVFENANQAAPAI 302 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 303 IFIDEIDSIA 312 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 8/68 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAK-AGDLAALLTNLEDRD------VL 109 L GPPG GKT LA+ VA+E NF S S +++K G+ + + R V+ Sbjct: 517 LLYGPPGTGKTQLAKAVAKEADANFISMKSSDLLSKWYGESEQQIAKMFRRARAVSPCVI 576 Query: 110 FIDEIHRL 117 FIDEI L Sbjct: 577 FIDEIDSL 584 >gi|316933822|ref|YP_004108804.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris DX-1] gi|315601536|gb|ADU44071.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris DX-1] Length = 424 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|260460896|ref|ZP_05809146.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium opportunistum WSM2075] gi|319784103|ref|YP_004143579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259033473|gb|EEW34734.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium opportunistum WSM2075] gi|317169991|gb|ADV13529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 424 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLIGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 172 YNVERAQRGIVYIDEIDKIS 191 >gi|237798721|ref|ZP_04587182.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806154|ref|ZP_04592858.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021574|gb|EGI01631.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027267|gb|EGI07322.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv. oryzae str. 1_6] Length = 805 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 VL VGPPG+GKT++ + +A LG F S + A+ G L L Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI ++ + E L P D LDL + Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++LS+ + + + PL DR + IRL+ Y E+ I +R Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKR 540 >gi|197103210|ref|YP_002128588.1| ATP-dependent protease LA [Phenylobacterium zucineum HLK1] gi|196480486|gb|ACG80013.1| ATP-dependent protease LA [Phenylobacterium zucineum HLK1] Length = 792 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVI--------------AKAGDLAALLT 101 + FVGPPG+GKT+L Q +AR + F R + G V A G++ + Sbjct: 358 LCFVGPPGVGKTSLGQSIARAMHRPFVRVSLGGVHDESEIRGHRRTYVGALPGNIIQAIR 417 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 RD V+ +DEI ++S + E+L P D + +V +LS Sbjct: 418 KAGRRDCVMMLDEIDKMSAGLHGDPSAALLEVLDPEQNATFRDNYL-------AVPFDLS 470 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 R + + + PL+DR I I+L+ Y + I +R Sbjct: 471 RVVFLTTANMLDTIPGPLRDRMEI-IQLSGYTAGEKLQIAER 511 >gi|110668618|ref|YP_658429.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum walsbyi DSM 16790] gi|109626365|emb|CAJ52824.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum walsbyi DSM 16790] Length = 753 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ +F + SGP I Sbjct: 226 VLLHGPPGTGKTLIAKAVANEIDASFHTISGPEI 259 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 499 VLMYGPPGTGKTMLAKAVANESESNFISVKGP 530 >gi|86749682|ref|YP_486178.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris HaA2] gi|123292611|sp|Q2IWZ3|CLPX_RHOP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|86572710|gb|ABD07267.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodopseudomonas palustris HaA2] Length = 424 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|74226963|dbj|BAE27123.1| unnamed protein product [Mus musculus] Length = 456 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|194333458|ref|YP_002015318.1| ATP-dependent protease ATP-binding subunit ClpX [Prosthecochloris aestuarii DSM 271] gi|238693326|sp|B4S620|CLPX_PROA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|194311276|gb|ACF45671.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prosthecochloris aestuarii DSM 271] Length = 439 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103 ++L +GP G GKT LAQ +A L V F + +AG D+ +LT NL Sbjct: 133 NILLIGPTGTGKTLLAQTLANLLDVPFTIVDATSLTEAGYVGDDVETILTRLLQASDFNL 192 Query: 104 E--DRDVLFIDEIHRLS 118 E +R ++++DEI +++ Sbjct: 193 ERAERGIIYVDEIDKIA 209 >gi|308475041|ref|XP_003099740.1| hypothetical protein CRE_23600 [Caenorhabditis remanei] gi|308266395|gb|EFP10348.1| hypothetical protein CRE_23600 [Caenorhabditis remanei] Length = 329 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 21/124 (16%) Query: 6 GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV------- 57 G L+ N+S ED +IS G E L+ F++ + E D V Sbjct: 66 GPLANNMSPEDPGNISY------SHVGGLAEQIRELREFVDLSLINLELFDRVGISPPKG 119 Query: 58 -LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED--RD----VLF 110 L GPPG GKT LA+ VA E N+ P I D + D RD ++F Sbjct: 120 CLLFGPPGNGKTLLARAVAFESEYNYVEVVSPTIVNYEDSVKTIRGTFDHARDHQPCIIF 179 Query: 111 IDEI 114 +DEI Sbjct: 180 MDEI 183 >gi|302190914|ref|ZP_07267168.1| DNA polymerase III, gamma/tau subunit [Lactobacillus iners AB-1] Length = 583 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65 Query: 82 FRSTSGPVIAKAGDLAA 98 P + LAA Sbjct: 66 DSKDGEPCNQCSNCLAA 82 >gi|302759084|ref|XP_002962965.1| hypothetical protein SELMODRAFT_78692 [Selaginella moellendorffii] gi|300169826|gb|EFJ36428.1| hypothetical protein SELMODRAFT_78692 [Selaginella moellendorffii] Length = 516 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 271 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 330 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 331 IFIDEIDSL 339 >gi|281414009|ref|ZP_06245751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus luteus NCTC 2665] Length = 358 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108 ++L VGP G GKT LAQ +AR L V F + +AG + + N+ D DV Sbjct: 51 NILMVGPTGSGKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAADYDV 110 Query: 109 -------LFIDEIHRLS 118 ++IDEI ++S Sbjct: 111 KKAEQGIIYIDEIDKIS 127 >gi|260945197|ref|XP_002616896.1| hypothetical protein CLUG_02340 [Clavispora lusitaniae ATCC 42720] gi|238848750|gb|EEQ38214.1| hypothetical protein CLUG_02340 [Clavispora lusitaniae ATCC 42720] Length = 391 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA--------KAGDLAALLTNLEDRDV 108 VLF GPPG GKT LA+ +A+E G F S + K D L N + Sbjct: 168 VLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSTVMDKWYGESNKIVDAIFSLANKLQPCI 227 Query: 109 LFIDEI 114 +FIDEI Sbjct: 228 IFIDEI 233 >gi|241958412|ref|XP_002421925.1| mitochondrial membrane-spanning ATPase, putative [Candida dubliniensis CD36] gi|223645270|emb|CAX39926.1| mitochondrial membrane-spanning ATPase, putative [Candida dubliniensis CD36] Length = 369 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108 VLF GPPG GKT LA+ +A+E G F S I K D L N + Sbjct: 137 VLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSSIMDKWYGESNKITDAIFSLANKLQPCI 196 Query: 109 LFIDEI 114 +FIDEI Sbjct: 197 IFIDEI 202 >gi|217979045|ref|YP_002363192.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocella silvestris BL2] gi|254763855|sp|B8EIL3|CLPX_METSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|217504421|gb|ACK51830.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocella silvestris BL2] Length = 421 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|197692395|dbj|BAG70161.1| RuvB-like 1 [Homo sapiens] Length = 456 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|218248318|ref|YP_002373689.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|257060355|ref|YP_003138243.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] gi|218168796|gb|ACK67533.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|256590521|gb|ACV01408.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] Length = 673 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T + G EA + L +E +K A VL VGPPG GKT LA+ VA E Sbjct: 208 TFNDVAGAEEAKTELVEIVEFLKNPERFSKIGARIPKGVLLVGPPGTGKTLLAKAVAGEA 267 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 GV F S S + G AA + +L ++ ++FIDE+ Sbjct: 268 GVTFFSISASEFVELFVGTGAARVRDLFEQAKKQAPCIIFIDEL 311 >gi|124025672|ref|YP_001014788.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. NATL1A] gi|123960740|gb|ABM75523.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. NATL1A] Length = 640 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|119625618|gb|EAX05213.1| spermatogenesis associated 5, isoform CRA_a [Homo sapiens] Length = 856 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 353 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 412 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 413 IFIDELDAL 421 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 627 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 658 >gi|117921101|ref|YP_870293.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp. ANA-3] gi|166215205|sp|A0KYL8|CLPX_SHESA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|117613433|gb|ABK48887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella sp. ANA-3] Length = 426 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|62896709|dbj|BAD96295.1| TATA binding protein interacting protein 49 kDa variant [Homo sapiens] Length = 456 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|29476791|gb|AAH48217.1| SPATA5 protein [Homo sapiens] Length = 695 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 389 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 448 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 449 IFIDELDALC 458 >gi|89900347|ref|YP_522818.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodoferax ferrireducens T118] gi|122479496|sp|Q21Y66|CLPX_RHOFD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|89345084|gb|ABD69287.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodoferax ferrireducens T118] Length = 421 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 114 AKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVLKLLQSCN 173 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 YEVERAQRGIVYIDEIDKIS 193 >gi|27311537|gb|AAO00734.1| Lon protease homolog 1 precursor [Arabidopsis thaliana] gi|34098905|gb|AAQ56835.1| At5g47040 [Arabidopsis thaliana] Length = 557 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 33/206 (16%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72 + + D+ + R + G + + ++ K + +A VL FVGPPG+GKT+LA Sbjct: 29 EHELDLKAAKERLDSDHYGLAKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLAS 88 Query: 73 VVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR-----DVLFIDEIHR 116 +A LG F R + G V +A G + L + R V+ +DEI + Sbjct: 89 SIAAALGRKFVRLSLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDK 148 Query: 117 LSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 V E+L P D + +V +LS+ +A RV + Sbjct: 149 TGSDVRGDPASALLEVLDPEQNKSFNDHYL-------NVPYDLSKVVFVATANRVQPIPP 201 Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL DR + I L Y E+ I R Sbjct: 202 PLLDRMEL-IELPGYTQEEKLKIAMR 226 >gi|78223596|ref|YP_385343.1| FtsH peptidase [Geobacter metallireducens GS-15] gi|78194851|gb|ABB32618.1| FtsH peptidase, Metallo peptidase, MEROPS family M41 [Geobacter metallireducens GS-15] Length = 619 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL VGPPG GKT LA+ VA E GV F S + V AG + L + + Sbjct: 211 VLLVGPPGTGKTLLARAVAGEAGVTFLSITASQFIEMFVGVGAGRVRDLFATAKKSAPSI 270 Query: 109 LFIDEI 114 +FIDEI Sbjct: 271 IFIDEI 276 >gi|20088903|ref|NP_614978.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|20090392|ref|NP_616467.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|20090436|ref|NP_616511.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|20090733|ref|NP_616808.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|20090876|ref|NP_616951.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|20091645|ref|NP_617720.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|20092245|ref|NP_618320.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|20092315|ref|NP_618390.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|20092558|ref|NP_618633.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|20092926|ref|NP_619001.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|20093314|ref|NP_619389.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|19913745|gb|AAM03458.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|19915401|gb|AAM04947.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|19915450|gb|AAM04991.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|19915788|gb|AAM05288.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|19915950|gb|AAM05431.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|19916813|gb|AAM06200.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|19917480|gb|AAM06800.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|19917560|gb|AAM06870.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|19917831|gb|AAM07113.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|19918237|gb|AAM07481.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|19918673|gb|AAM07869.1| IstB helper protein [Methanosarcina acetivorans C2A] Length = 257 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 13/103 (12%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLA-----QVVARE 77 +TLEEF + + + K + A R ++V+F+GPPG+GK+ LA +V Sbjct: 71 KKTLEEFDFEFQKSIDKKAIEDLATLRFVHNSENVVFLGPPGVGKSHLAIALGIEVAKAG 130 Query: 78 LGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114 + V F +T G +I K G L L +L VL IDEI Sbjct: 131 ISVYFTNT-GNLIEKLKIANREGMLEKKLRDLMKYKVLIIDEI 172 >gi|20089920|ref|NP_615995.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|19914877|gb|AAM04475.1| IstB helper protein [Methanosarcina acetivorans C2A] Length = 257 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 13/103 (12%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLA-----QVVARE 77 +TLEEF + + + K + A R ++V+F+GPPG+GK+ LA +V Sbjct: 71 KKTLEEFDFEFQKSIDKKAIEDLATLRFVHNSENVVFLGPPGVGKSHLAIALGIEVAKAG 130 Query: 78 LGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114 + V F +T G +I K G L L +L VL IDEI Sbjct: 131 ISVYFTNT-GNLIEKLKIANREGMLEKKLRDLMKYKVLIIDEI 172 >gi|169768094|ref|XP_001818518.1| hypothetical protein AOR_1_2826174 [Aspergillus oryzae RIB40] gi|238485043|ref|XP_002373760.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Aspergillus flavus NRRL3357] gi|83766373|dbj|BAE56516.1| unnamed protein product [Aspergillus oryzae] gi|220701810|gb|EED58148.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Aspergillus flavus NRRL3357] Length = 735 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 512 VLLWGPPGCGKTLLAKAVANESHANFISVKGP 543 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A A ELGV F S S P I Sbjct: 208 VLLHGPPGCGKTMIANAFAAELGVPFISISAPSI 241 >gi|67622295|ref|XP_667804.1| replication factor c subunit 4 [Cryptosporidium hominis TU502] gi|54658967|gb|EAL37571.1| replication factor c subunit 4 [Cryptosporidium hominis] Length = 327 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP+ L+E G E + LKV A+ + ++L GPPG GKTT +A E+ Sbjct: 7 IEKYRPKILDEMVGNEEVLTRLKVL-----AKHGNMPNLLLSGPPGTGKTTSIHCLASEM 61 >gi|319425893|gb|ADV53967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella putrefaciens 200] Length = 426 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|325111245|ref|YP_004272313.1| DNA polymerase III subunits gamma and tau [Planctomyces brasiliensis DSM 5305] gi|324971513|gb|ADY62291.1| DNA polymerase III, subunits gamma and tau [Planctomyces brasiliensis DSM 5305] Length = 593 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+T + GQ L+ I RAE + H LF G G+GKT++A+++A+ L Sbjct: 16 RPQTFDAVVGQQHVAQALRNAI-----RAERVAHAYLFTGARGVGKTSMARILAKALNCT 70 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 P +L ++ D DV+ ID Sbjct: 71 NSQDGNPC--NQCELCQAISTGSDVDVMEID 99 >gi|302343613|ref|YP_003808142.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075] gi|301640226|gb|ADK85548.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075] Length = 609 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT L++ VA E GV F S SG V A + L +++ + Sbjct: 189 VLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVELFVGVGAARVRELFAQAKEKAPCI 248 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 249 IFIDELDALG 258 >gi|302761752|ref|XP_002964298.1| hypothetical protein SELMODRAFT_166381 [Selaginella moellendorffii] gi|300168027|gb|EFJ34631.1| hypothetical protein SELMODRAFT_166381 [Selaginella moellendorffii] Length = 600 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLEDR---DV 108 +L GPPG GKT LA+ VA E G NF + S IA +A + L + V Sbjct: 334 LLLFGPPGTGKTMLAKAVATEAGANFINISMSTIASKWFGEAEKYVKAVFTLASKISPSV 393 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 394 VFIDEV 399 >gi|259501365|ref|ZP_05744267.1| DNA polymerase III [Lactobacillus iners DSM 13335] gi|259167218|gb|EEW51713.1| DNA polymerase III [Lactobacillus iners DSM 13335] Length = 605 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ C L+ I+ K + H LF GP G GKT+ A++ A+ + Sbjct: 33 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 87 Query: 82 FRSTSGPVIAKAGDLAA 98 P + LAA Sbjct: 88 DSKDGEPCNQCSNCLAA 104 >gi|254469906|ref|ZP_05083311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio sp. JE062] gi|211961741|gb|EEA96936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio sp. JE062] Length = 421 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLVGPTGCGKTHLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189 >gi|154506029|ref|ZP_02042767.1| hypothetical protein RUMGNA_03571 [Ruminococcus gnavus ATCC 29149] gi|153793528|gb|EDN75948.1| hypothetical protein RUMGNA_03571 [Ruminococcus gnavus ATCC 29149] Length = 424 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 28/129 (21%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63 DI+LL P ++ F GQ EA L V + R A ++L +GP Sbjct: 61 DINLLTPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAGSDLGVDLQKSNILMLGPT 120 Query: 64 GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVL 109 G GKT LAQ +A+ L V F + +AG D+ ++L + + ++ Sbjct: 121 GCGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVESILLKVIQAADGDIERAEHGII 180 Query: 110 FIDEIHRLS 118 +IDEI +++ Sbjct: 181 YIDEIDKIT 189 >gi|149728221|ref|XP_001488151.1| PREDICTED: similar to RuvB-like 1 (49 kDa TATA box-binding protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (Nuclear matrix protein 238) (NMP 238) (54 kDa erythrocyte cytosolic protein) [Equus caballus] Length = 456 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|117646480|emb|CAL38707.1| hypothetical protein [synthetic construct] Length = 893 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 450 IFIDELDAL 458 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695 >gi|114595942|ref|XP_517427.2| PREDICTED: spermatogenesis-associated protein 5 isoform 2 [Pan troglodytes] Length = 893 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 450 IFIDELDALC 459 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695 >gi|21749742|dbj|BAC03651.1| unnamed protein product [Homo sapiens] Length = 893 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 450 IFIDELDAL 458 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695 >gi|84996219|ref|XP_952831.1| 26S proteasome ATPase subunit [Theileria annulata strain Ankara] gi|65303829|emb|CAI76206.1| 26S proteasome ATPase subunit, putative [Theileria annulata] Length = 448 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNL----EDRD--V 108 VL GPPG GKT LA+ +A +LG NF + + V+ K G+ A ++ + +D + Sbjct: 229 VLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIREMFGYAKDNQPCI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|75761782|ref|ZP_00741718.1| Cell division protein ftsH / Peptidase family M41 [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490732|gb|EAO54012.1| Cell division protein ftsH / Peptidase family M41 [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 267 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/31 (67%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228 >gi|66359084|ref|XP_626720.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa II] gi|46228380|gb|EAK89279.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa II] Length = 339 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP+ L+E G E + LKV A+ + ++L GPPG GKTT +A E+ Sbjct: 19 IEKYRPKILDEMVGNEEVLTRLKVL-----AKHGNMPNLLLSGPPGTGKTTSIHCLASEM 73 >gi|331092500|ref|ZP_08341322.1| hypothetical protein HMPREF9477_01965 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400721|gb|EGG80324.1| hypothetical protein HMPREF9477_01965 [Lachnospiraceae bacterium 2_1_46FAA] Length = 611 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F + SG Sbjct: 199 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 229 >gi|224070736|ref|XP_002186835.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 751 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 17/25 (68%), Positives = 18/25 (72%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVN 81 L GPPGLGKTTLA V+AR G N Sbjct: 302 ALLCGPPGLGKTTLAHVIARHAGYN 326 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 17/25 (68%), Positives = 18/25 (72%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVN 81 L GPPGLGKTTLA V+AR G N Sbjct: 669 ALLCGPPGLGKTTLAHVIARHAGYN 693 >gi|253701836|ref|YP_003023025.1| ATP-dependent protease La [Geobacter sp. M21] gi|251776686|gb|ACT19267.1| ATP-dependent protease La [Geobacter sp. M21] Length = 800 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 45/183 (24%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83 FI K + + +L VGPPG+GKT++ + +A LG F R Sbjct: 363 FIAVGKMKGDISGSILCLVGPPGVGKTSIGKSIADALGRTFYRFSLGGMRDEAEIKGHRR 422 Query: 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE--------EILYP----AMED 131 + G + K + A+ + VL +DEI ++ + E+L P + D Sbjct: 423 TYIGAMPGKF--VQAMKSAGSSNPVLMLDEIDKIGASFQGDPASALLEVLDPEQNGSFRD 480 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191 LD V +LS IA ++ + PL DR + IRL+ Y +E+ I Sbjct: 481 HYLD-----------VPFDLSNVLFIATANQLDTIPAPLLDRMEV-IRLSGYVLEEKMEI 528 Query: 192 VQR 194 +R Sbjct: 529 ARR 531 >gi|155371883|ref|NP_001094546.1| ruvB-like 1 [Bos taurus] gi|154426056|gb|AAI51552.1| RUVBL1 protein [Bos taurus] gi|296474623|gb|DAA16738.1| RuvB-like 1 [Bos taurus] Length = 456 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|119625619|gb|EAX05214.1| spermatogenesis associated 5, isoform CRA_b [Homo sapiens] Length = 890 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 450 IFIDELDALC 459 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 661 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 692 >gi|32266378|ref|NP_860410.1| ATP-dependent zinc metalloproteinase [Helicobacter hepaticus ATCC 51449] gi|32262428|gb|AAP77476.1| ATP-dependent zinc metalloproteinase [Helicobacter hepaticus ATCC 51449] Length = 562 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 199 VLLVGPPGVGKTMIAKAVAGEAGVPFFYQSGS 230 >gi|39936025|ref|NP_948301.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris CGA009] gi|192291680|ref|YP_001992285.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris TIE-1] gi|61211520|sp|Q6N5L4|CLPX_RHOPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|229484081|sp|B3Q7P4|CLPX_RHOPT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|39649879|emb|CAE28401.1| ATP-dependent Clp protease ATP binding subunit ClpX [Rhodopseudomonas palustris CGA009] gi|192285429|gb|ACF01810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris TIE-1] Length = 424 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|86133647|ref|ZP_01052229.1| DNA polymerase III subunit gamma/tau [Polaribacter sp. MED152] gi|85820510|gb|EAQ41657.1| DNA polymerase III subunit gamma/tau [Polaribacter sp. MED152] Length = 561 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 40/238 (16%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ E+ GQ +A +N +E A +LF GP G+GKT+ A+++A+++ Sbjct: 12 RPQNFEDVVGQ-QAITNT---LENAIKNNHLAQALLFTGPRGVGKTSCARILAKKINQQE 67 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS--------------IIVEEILYPA 128 +S + D A + L+ +D+I L+ I++E+ + Sbjct: 68 VESS-----EDEDFAFNIFELDAASNNSVDDIRSLTDQVRIPPQTGKYKVYIIDEVHMLS 122 Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE-- 186 F L E P A ++ I ATT + + R I +F I Sbjct: 123 QAAFNAFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI---FDFKRIGVL 171 Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 D K ++ ++ G+ D+A IA ++ G R A + RV F+ K +TRE Sbjct: 172 DAKNYLKTISEKEGINADDDALHIIAQKADGAMRDALSIFDRVVSFS----GKELTRE 225 >gi|68481793|ref|XP_715138.1| hypothetical protein CaO19.4362 [Candida albicans SC5314] gi|68481896|ref|XP_715087.1| hypothetical protein CaO19.11840 [Candida albicans SC5314] gi|46436695|gb|EAK96053.1| hypothetical protein CaO19.11840 [Candida albicans SC5314] gi|46436748|gb|EAK96105.1| hypothetical protein CaO19.4362 [Candida albicans SC5314] gi|238879825|gb|EEQ43463.1| hypothetical protein CAWG_01700 [Candida albicans WO-1] Length = 369 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108 VLF GPPG GKT LA+ +A+E G F S I K D L N + Sbjct: 137 VLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSSIMDKWYGESNKITDAIFSLANKLQPCI 196 Query: 109 LFIDEI 114 +FIDEI Sbjct: 197 IFIDEI 202 >gi|322795747|gb|EFZ18426.1| hypothetical protein SINV_08833 [Solenopsis invicta] Length = 511 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLED---RDV 108 VL VGPPG GKT LA+ VA E G F + S + ++ L LL + Sbjct: 267 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 326 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 327 IFIDEIDSL 335 >gi|319957420|ref|YP_004168683.1| membrane protease ftsh catalytic subunit [Nitratifractor salsuginis DSM 16511] gi|319419824|gb|ADV46934.1| membrane protease FtsH catalytic subunit [Nitratifractor salsuginis DSM 16511] Length = 696 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL VGPPG GKT LA+ VA E V F S SG + G A+ + +L E + Sbjct: 219 VLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSSFIEMFVGVGASRVRDLFEQAKKEAPSI 278 Query: 109 LFIDEI 114 +FIDEI Sbjct: 279 IFIDEI 284 >gi|315425403|dbj|BAJ47068.1| replication factor C small subunit [Candidatus Caldiarchaeum subterraneum] gi|315427367|dbj|BAJ48977.1| replication factor C small subunit [Candidatus Caldiarchaeum subterraneum] Length = 327 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 11/59 (18%) Query: 23 RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR L++ Q VEA N+ V ++ + H+LF GPPG GKT A A++L Sbjct: 16 RPRRLDDVVNQEQVVEALKNIVV--------SKNVPHMLFAGPPGTGKTATAHAFAQDL 66 >gi|308232597|ref|ZP_07416569.2| hypothetical protein TMAG_00615 [Mycobacterium tuberculosis SUMu001] gi|308371486|ref|ZP_07425111.2| hypothetical protein TMCG_01378 [Mycobacterium tuberculosis SUMu003] gi|308371531|ref|ZP_07425240.2| hypothetical protein TMDG_01826 [Mycobacterium tuberculosis SUMu004] gi|308372769|ref|ZP_07429773.2| hypothetical protein TMEG_00367 [Mycobacterium tuberculosis SUMu005] gi|308373853|ref|ZP_07433840.2| hypothetical protein TMFG_02105 [Mycobacterium tuberculosis SUMu006] gi|308375016|ref|ZP_07442388.2| hypothetical protein TMGG_01414 [Mycobacterium tuberculosis SUMu007] gi|308378501|ref|ZP_07482776.2| hypothetical protein TMIG_00224 [Mycobacterium tuberculosis SUMu009] gi|308379651|ref|ZP_07487011.2| hypothetical protein TMJG_01124 [Mycobacterium tuberculosis SUMu010] gi|308380845|ref|ZP_07491226.2| hypothetical protein TMKG_01118 [Mycobacterium tuberculosis SUMu011] gi|308213388|gb|EFO72787.1| hypothetical protein TMAG_00615 [Mycobacterium tuberculosis SUMu001] gi|308328641|gb|EFP17492.1| hypothetical protein TMCG_01378 [Mycobacterium tuberculosis SUMu003] gi|308336386|gb|EFP25237.1| hypothetical protein TMDG_01826 [Mycobacterium tuberculosis SUMu004] gi|308339983|gb|EFP28834.1| hypothetical protein TMEG_00367 [Mycobacterium tuberculosis SUMu005] gi|308343981|gb|EFP32832.1| hypothetical protein TMFG_02105 [Mycobacterium tuberculosis SUMu006] gi|308347766|gb|EFP36617.1| hypothetical protein TMGG_01414 [Mycobacterium tuberculosis SUMu007] gi|308352390|gb|EFP41241.1| hypothetical protein TMIG_00224 [Mycobacterium tuberculosis SUMu009] gi|308356340|gb|EFP45191.1| hypothetical protein TMJG_01124 [Mycobacterium tuberculosis SUMu010] gi|308360296|gb|EFP49147.1| hypothetical protein TMKG_01118 [Mycobacterium tuberculosis SUMu011] Length = 583 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57 RE LL+ ++ D I L R + E +V A +KV A+ H+ Sbjct: 289 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 340 Query: 58 LFVGPPGLGKTTLAQVVA 75 +F GPPG GKTT+A+VVA Sbjct: 341 IFTGPPGTGKTTIARVVA 358 >gi|283781331|ref|YP_003372086.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068] gi|310946755|sp|D2QZ34|FTSH_PIRSD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|283439784|gb|ADB18226.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068] Length = 700 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 258 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 288 >gi|257093850|ref|YP_003167491.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046374|gb|ACV35562.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 423 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 112 AKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQKAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 172 YDTEKAQRGIVYIDEIDKIS 191 >gi|296128488|ref|YP_003635738.1| ATP-dependent metalloprotease FtsH [Cellulomonas flavigena DSM 20109] gi|296020303|gb|ADG73539.1| ATP-dependent metalloprotease FtsH [Cellulomonas flavigena DSM 20109] Length = 682 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 7/80 (8%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGK 67 VS+E ++ ++E VE +K F+ E +K +A + VL GPPG GK Sbjct: 161 VSKESPKVTFADVAGVDE---AVEELQEIKEFLSEPSKFQAVGAKIPKGVLLYGPPGTGK 217 Query: 68 TTLAQVVARELGVNFRSTSG 87 T LA+ VA E GV F S SG Sbjct: 218 TLLARAVAGEAGVPFYSISG 237 >gi|297563885|ref|YP_003682858.1| ATP-dependent metalloprotease FtsH [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848334|gb|ADH70352.1| ATP-dependent metalloprotease FtsH [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 685 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ VA E GV F S SG Sbjct: 203 VLLMGPPGTGKTLLARAVAGEAGVPFYSISG 233 >gi|224367557|ref|YP_002601720.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfobacterium autotrophicum HRM2] gi|259491255|sp|C0QHJ8|CLPX_DESAH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|223690273|gb|ACN13556.1| ClpX1 [Desulfobacterium autotrophicum HRM2] Length = 418 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 114 NILLIGPTGCGKTLLAQTLARFLDVPFALADATTLTEAGYVGEDVENIILSLVQNADYDI 173 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 174 EKAQRGIIYIDEVDKIS 190 >gi|222528930|ref|YP_002572812.1| ATP-dependent protease La [Caldicellulosiruptor bescii DSM 6725] gi|222455777|gb|ACM60039.1| ATP-dependent protease La [Caldicellulosiruptor bescii DSM 6725] Length = 775 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S E DI+L++ E+ G + + +I K + + +L VGPPG+GKT++A Sbjct: 309 SDEKIDINLVKKVLDEDHYGLTKVKERILEYIAVRKLKNDMKGPILCLVGPPGVGKTSIA 368 Query: 72 QVVARELGVNF 82 + +AR L N+ Sbjct: 369 KSIARALNRNY 379 >gi|195052158|ref|XP_001993245.1| GH13174 [Drosophila grimshawi] gi|193900304|gb|EDV99170.1| GH13174 [Drosophila grimshawi] Length = 990 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 17/26 (65%), Positives = 18/26 (69%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 417 LLCGPPGLGKTTLAHTIARHAGYNVR 442 >gi|170744850|ref|YP_001773505.1| AAA family ATPase, CDC48 subfamily protein [Methylobacterium sp. 4-46] gi|168199124|gb|ACA21071.1| AAA family ATPase, CDC48 subfamily [Methylobacterium sp. 4-46] Length = 757 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRST-SGPVIAK-AGDLAALLTNLEDR------DVL 109 L GPPG GKT LA+ VARE NF +T S +++K G+ ++ L R V+ Sbjct: 514 LLFGPPGTGKTLLAKAVAREASANFVATKSSDLLSKWYGESEQQVSRLFARARQVAPTVI 573 Query: 110 FIDEIHRLSII 120 FIDEI L+ + Sbjct: 574 FIDEIDSLAPV 584 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 8/75 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGD----LAALLTNLEDRD--V 108 VL GPPG GKT LA+ VA E F +GP I ++ G+ L + ++ + + Sbjct: 241 VLLYGPPGTGKTLLARAVANETEAQFFHIAGPEIMGSQYGESEQRLRQIFSDAQRNSPAI 300 Query: 109 LFIDEIHRLSIIVEE 123 +FIDEI ++ EE Sbjct: 301 IFIDEIDSIAPKREE 315 >gi|19880131|gb|AAM00262.1|AF361489_1 spermatogenesis associated factor [Homo sapiens] Length = 893 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 450 IFIDELDALC 459 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695 >gi|86604737|ref|YP_473500.1| FtsH family metalloprotease [Synechococcus sp. JA-3-3Ab] gi|86553279|gb|ABC98237.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp. JA-3-3Ab] Length = 628 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 203 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 233 >gi|73984474|ref|XP_856966.1| PREDICTED: similar to RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (Nuclear matrix protein 238) (NMP 238) (54 kDa erythrocyte cytosolic protein) (ECP-54) (TIP60-associated protein 54-a... iso [Canis familiaris] Length = 450 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|73984476|ref|XP_857008.1| PREDICTED: similar to RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (Nuclear matrix protein 238) (NMP 238) (54 kDa erythrocyte cytosolic protein) (ECP-54) (TIP60-associated protein 54-a... iso [Canis familiaris] Length = 454 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 EAC V +E K++ A VL GPPG GKT LA +A+ELG Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 >gi|72382133|ref|YP_291488.1| FtsH peptidase [Prochlorococcus marinus str. NATL2A] gi|72001983|gb|AAZ57785.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus str. NATL2A] Length = 640 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|66529882|ref|XP_397402.2| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like [Apis mellifera] Length = 506 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 262 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 321 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 322 IFIDEIDSL 330 >gi|88808601|ref|ZP_01124111.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805] gi|88787589|gb|EAR18746.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805] Length = 637 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|91977363|ref|YP_570022.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris BisB5] gi|123762673|sp|Q135W8|CLPX_RHOPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|91683819|gb|ABE40121.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodopseudomonas palustris BisB5] Length = 424 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|326927944|ref|XP_003210147.1| PREDICTED: ruvB-like 1-like [Meleagris gallopavo] Length = 456 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 EAC V +E K++ A VL GPPG GKT LA +A+ELG Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 >gi|326427696|gb|EGD73266.1| RuvB-like helicase 1 [Salpingoeca sp. ATCC 50818] Length = 455 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ +A + ++ KA+ A VLF GPPG GKT LA ++ ELG Sbjct: 39 LVGQDQAREAASIVVDLIKAKKMAGRAVLFAGPPGTGKTALALAISSELG 88 >gi|323509483|dbj|BAJ77634.1| cgd3_1450 [Cryptosporidium parvum] Length = 327 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP+ L+E G E + LKV A+ + ++L GPPG GKTT +A E+ Sbjct: 7 IEKYRPKILDEMVGNEEVLTRLKVL-----AKHGNMPNLLLSGPPGTGKTTSIHCLASEM 61 >gi|323450958|gb|EGB06837.1| hypothetical protein AURANDRAFT_59175 [Aureococcus anophagefferens] Length = 479 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 11/89 (12%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----- 88 V+ SN + F K A++ VL GPPG GKT LA+ VA E GV F S SG Sbjct: 47 VDFLSNPEKFT---KVGAQSPRGVLLEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEM 103 Query: 89 -VIAKAGDLAALLTNLEDRD--VLFIDEI 114 V A + +L + + ++FIDEI Sbjct: 104 FVGVGASRIRSLFADAKKNAPCIIFIDEI 132 >gi|320164674|gb|EFW41573.1| peroxisome assembly factor-2 [Capsaspora owczarzaki ATCC 30864] Length = 1171 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E +NF S GP Sbjct: 916 LLLYGPPGTGKTLLAKAVATECSLNFISVKGP 947 >gi|309799588|ref|ZP_07693814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus infantis SK1302] gi|308116776|gb|EFO54226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus infantis SK1302] Length = 268 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 106 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 165 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 166 ERAERGIIYVDEIDKIA 182 >gi|299751623|ref|XP_001830385.2| peroxisome biogenesis factor 1 [Coprinopsis cinerea okayama7#130] gi|298409459|gb|EAU91532.2| peroxisome biogenesis factor 1 [Coprinopsis cinerea okayama7#130] Length = 962 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L G PG GKT LA VA+E G+NF S GP I Sbjct: 647 LLLYGYPGCGKTLLASAVAKECGLNFISVKGPEI 680 >gi|296226000|ref|XP_002758742.1| PREDICTED: ruvB-like 1 isoform 2 [Callithrix jacchus] Length = 386 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|295100805|emb|CBK98350.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Faecalibacterium prausnitzii L2-6] Length = 443 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108 +VL +GP G+GKT LAQ +A+ LGV F + +AG + + N+ D DV Sbjct: 133 NVLLLGPSGVGKTLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADFDV 192 Query: 109 -------LFIDEIHRLS 118 ++IDEI +++ Sbjct: 193 QKAQIGIIYIDEIDKIT 209 >gi|257388135|ref|YP_003177908.1| ATPase AAA [Halomicrobium mukohataei DSM 12286] gi|257170442|gb|ACV48201.1| AAA family ATPase, CDC48 subfamily [Halomicrobium mukohataei DSM 12286] Length = 757 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ +F + SGP I Sbjct: 230 VLLHGPPGTGKTLMAKAVANEIDAHFTTISGPEI 263 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A VL GPPG GKT LA+ VA E NF S GP Sbjct: 498 QAAKGVLLYGPPGTGKTLLAKAVANEAQSNFISIKGP 534 >gi|224066125|ref|XP_002198322.1| PREDICTED: RuvB-like 1 [Taeniopygia guttata] Length = 456 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 EAC V +E K++ A VL GPPG GKT LA +A+ELG Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 >gi|221131979|ref|XP_002167314.1| PREDICTED: similar to ClpX caseinolytic protease X homolog [Hydra magnipapillata] Length = 683 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 14/79 (17%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTN--------- 102 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +++T Sbjct: 349 NILLLGPTGSGKTLLAQTIAKCLDVPFAMCDCTSLTQAGYVGEDIESVITKLLQEANYNV 408 Query: 103 -LEDRDVLFIDEIHRLSII 120 L + ++F+DE+ ++S + Sbjct: 409 ELAQQGIIFLDEVDKISCV 427 >gi|152980700|ref|YP_001353222.1| ATP-dependent protease ATP-binding subunit ClpX [Janthinobacterium sp. Marseille] gi|166214779|sp|A6SY75|CLPX_JANMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|151280777|gb|ABR89187.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Janthinobacterium sp. Marseille] Length = 422 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104 A ++L VGP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 112 AKSNILLVGPTGSGKTLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 171 Query: 105 ------DRDVLFIDEIHRLS 118 + +++IDEI ++S Sbjct: 172 YEVERAQKGIVYIDEIDKIS 191 >gi|148242501|ref|YP_001227658.1| cell division protein FtsH [Synechococcus sp. RCC307] gi|147850811|emb|CAK28305.1| Cell division protein FtsH [Synechococcus sp. RCC307] Length = 639 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 216 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 246 >gi|153000123|ref|YP_001365804.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica OS185] gi|166215202|sp|A6WLQ2|CLPX_SHEB8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|151364741|gb|ABS07741.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS185] Length = 426 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|121535064|ref|ZP_01666881.1| ATP-dependent metalloprotease FtsH [Thermosinus carboxydivorans Nor1] gi|121306314|gb|EAX47239.1| ATP-dependent metalloprotease FtsH [Thermosinus carboxydivorans Nor1] Length = 651 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA L+ +E K + D VL GPPG GKT LA+ VA E Sbjct: 161 TFKDVAGADEAKQELEEVVEFLKHPKKFNDLGARIPKGVLLFGPPGTGKTLLARAVAGEA 220 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 221 GVPFFSISG 229 >gi|126173839|ref|YP_001049988.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica OS155] gi|160874745|ref|YP_001554061.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica OS195] gi|217973909|ref|YP_002358660.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica OS223] gi|304409712|ref|ZP_07391332.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS183] gi|307304068|ref|ZP_07583821.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica BA175] gi|166215201|sp|A3D306|CLPX_SHEB5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189044150|sp|A9KWH8|CLPX_SHEB9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763862|sp|B8E5E8|CLPX_SHEB2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|125997044|gb|ABN61119.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS155] gi|160860267|gb|ABX48801.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS195] gi|217499044|gb|ACK47237.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS223] gi|304352230|gb|EFM16628.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS183] gi|306912966|gb|EFN43389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica BA175] gi|315266987|gb|ADT93840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS678] Length = 426 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|157876189|ref|XP_001686454.1| ruvb-like 1 DNA helicase [Leishmania major strain Friedlin] gi|68129528|emb|CAJ08071.1| putative ruvb-like 1 DNA helicase [Leishmania major strain Friedlin] Length = 459 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQ +A + +E +++ A +LF GPPG GKT LA +A+ELG Sbjct: 42 FVGQEKAREAAGIAVELIRSKKMAGRALLFAGPPGTGKTALALGIAKELG 91 >gi|60825511|gb|AAX36722.1| RuvB-like 1 [synthetic construct] Length = 457 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 EAC V +E K++ A VL GPPG GKT LA +A+ELG Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 >gi|33240371|ref|NP_875313.1| cell division protein FtsH [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237898|gb|AAP99965.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 638 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|23097534|ref|NP_691000.1| cell division protein [Oceanobacillus iheyensis HTE831] gi|22775757|dbj|BAC12035.1| cell division protein (general stress protein) [Oceanobacillus iheyensis HTE831] Length = 675 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L N + + Sbjct: 199 VLLVGPPGTGKTLLARAVAGEAGTPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 258 Query: 109 LFIDEI 114 +FIDEI Sbjct: 259 IFIDEI 264 >gi|154247519|ref|YP_001418477.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthobacter autotrophicus Py2] gi|238686732|sp|A7ILC7|CLPX_XANP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|154161604|gb|ABS68820.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthobacter autotrophicus Py2] Length = 422 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|67926050|ref|ZP_00519307.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501] gi|67852105|gb|EAM47607.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501] Length = 503 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239 >gi|163845899|ref|YP_001633943.1| ATP-dependent protease La [Chloroflexus aurantiacus J-10-fl] gi|222523621|ref|YP_002568091.1| ATP-dependent protease La [Chloroflexus sp. Y-400-fl] gi|163667188|gb|ABY33554.1| ATP-dependent protease La [Chloroflexus aurantiacus J-10-fl] gi|222447500|gb|ACM51766.1| ATP-dependent protease La [Chloroflexus sp. Y-400-fl] Length = 790 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 95/239 (39%), Gaps = 50/239 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L +AR LG F R G V +A G + L+ Sbjct: 361 LCFVGPPGVGKTSLGASIARALGRKFVRVALGGVRDEAEIRGHRRTYIGALPGRIIQGLS 420 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148 + + VL +DE+ +LSI + E+L P A D LD V Sbjct: 421 RAKSNNPVLLLDEVDKLSIGFQGDPAAALLEVLDPEQNVAFVDRYLD-----------VP 469 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208 +LS+ + R + L DR + + E E L+ I +R + Sbjct: 470 FDLSKVLFVCTANRADTIPPALLDRMELLELAGYTEQEKLE-IARR-------YLIPRQR 521 Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA---DAALLRLAIDKMGFDQLD 264 E M +RG L R +R++ A + + R I RLA ++ DQ+D Sbjct: 522 REQGMTNRGPELTTAALQRLIREYTHEAGVRDLERRIGAIYRKMATRLASEQTLPDQVD 580 >gi|327265956|ref|XP_003217773.1| PREDICTED: ruvB-like 1-like [Anolis carolinensis] Length = 456 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 EAC V +E K++ A VL GPPG GKT LA +A+ELG Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 >gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus] Length = 382 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP +LEE + L+ I + K L H+LF GPPG GKT+ A++L G + Sbjct: 70 RPSSLEELVAHEDIVGILQKLIASNK-----LPHLLFYGPPGTGKTSTILACAKKLYGAD 124 Query: 82 FR 83 F+ Sbjct: 125 FK 126 >gi|297674298|ref|XP_002815168.1| PREDICTED: spermatogenesis-associated protein 5-like isoform 2 [Pongo abelii] Length = 789 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 389 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 448 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 449 IFIDELDALC 458 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 663 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 694 >gi|261494049|ref|ZP_05990552.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496190|ref|ZP_05992596.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308142|gb|EEY09439.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310215|gb|EEY11415.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 415 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 118 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFEA 177 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 178 EQAERGIVFIDEIDKIT 194 >gi|269925293|ref|YP_003321916.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC BAA-798] gi|310946768|sp|D1CDT8|FTSH_THET1 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|269788953|gb|ACZ41094.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC BAA-798] Length = 646 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ VA E GV F S SG Sbjct: 233 VLLIGPPGTGKTLLARAVAGEAGVPFFSMSG 263 >gi|224058731|ref|XP_002299621.1| predicted protein [Populus trichocarpa] gi|222846879|gb|EEE84426.1| predicted protein [Populus trichocarpa] Length = 526 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 278 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 337 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 338 IFIDEIDSL 346 >gi|221633008|ref|YP_002522233.1| ATP-dependent protease La [Thermomicrobium roseum DSM 5159] gi|221156805|gb|ACM05932.1| ATP-dependent protease La [Thermomicrobium roseum DSM 5159] Length = 832 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 18/30 (60%), Positives = 22/30 (73%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 + FVGPPG+GKT+LAQ +AR LG F S Sbjct: 383 LCFVGPPGVGKTSLAQSIARALGRAFTRMS 412 >gi|215448213|ref|ZP_03434965.1| hypothetical protein MtubT_20554 [Mycobacterium tuberculosis T85] Length = 533 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57 RE LL+ ++ D I L R + E +V A +KV A+ H+ Sbjct: 275 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 326 Query: 58 LFVGPPGLGKTTLAQVVA 75 +F GPPG GKTT+A+VVA Sbjct: 327 IFTGPPGTGKTTIARVVA 344 >gi|152978445|ref|YP_001344074.1| ATP-dependent protease ATP-binding subunit [Actinobacillus succinogenes 130Z] gi|171704241|sp|A6VME2|CLPX_ACTSZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|150840168|gb|ABR74139.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinobacillus succinogenes 130Z] Length = 411 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 +VL +GP G GKT LAQ +AR L V F + +AG + LL N + Sbjct: 111 NVLLIGPTGSGKTLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENIIQKLLQNCDYDT 170 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI +++ Sbjct: 171 EKAEQGIIYIDEIDKIT 187 >gi|123968339|ref|YP_001009197.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. AS9601] gi|123198449|gb|ABM70090.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. AS9601] Length = 637 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|108804640|ref|YP_644577.1| ATP-dependent metalloprotease FtsH [Rubrobacter xylanophilus DSM 9941] gi|123069043|sp|Q1AV13|FTSH_RUBXD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|108765883|gb|ABG04765.1| ATP-dependent metalloprotease FtsH [Rubrobacter xylanophilus DSM 9941] Length = 651 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFIEAA----KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 V+ + +K F+E K A L VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 VQELTEIKEFLENPQKFQKLGARIPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISG 255 >gi|41615216|ref|NP_963714.1| replication factor C large subunit [Nanoarchaeum equitans Kin4-M] gi|42559421|sp|P60373|RFCL_NANEQ RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|40068940|gb|AAR39275.1| NEQ430 [Nanoarchaeum equitans Kin4-M] Length = 430 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP+TL+E Q +A L+ ++ K + + +L GPPG GKT+ +A ELG Sbjct: 38 RPKTLDEVENQEQAKQILRDYVINYKKKYKG-KALLLYGPPGTGKTSSVYALANELG 93 >gi|26553595|ref|NP_757529.1| recombination factor protein RarA [Mycoplasma penetrans HF-2] gi|26453601|dbj|BAC43933.1| predicted ATPase [Mycoplasma penetrans HF-2] Length = 409 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDRDVLFIDEIH 115 +LF G PG+GK+ Q + ++L NF + K L L L +++ ++ I+EIH Sbjct: 42 ILFFGNPGVGKSASIQFILKKLNKNFYYFNSTTNNKNDLLEILELATEDNKPIIIIEEIH 101 Query: 116 RLS 118 RL+ Sbjct: 102 RLN 104 >gi|322372510|ref|ZP_08047046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. C150] gi|321277552|gb|EFX54621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. C150] Length = 408 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 112 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 171 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 172 ERAERGIIYVDEIDKIA 188 >gi|300311894|ref|YP_003775986.1| ATP-dependent protease ATP-binding specificity subunit [Herbaspirillum seropedicae SmR1] gi|300074679|gb|ADJ64078.1| ATP-dependent protease (ATP-binding specificity subunit) protein [Herbaspirillum seropedicae SmR1] Length = 421 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104 A ++L VGP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 112 AKSNILLVGPTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 171 Query: 105 ------DRDVLFIDEIHRLS 118 + +++IDEI ++S Sbjct: 172 YEVEKAQKGIVYIDEIDKIS 191 >gi|282915794|ref|ZP_06323563.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus D139] gi|282320332|gb|EFB50673.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp. aureus D139] Length = 565 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 6/92 (6%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 + RP++ E+ GQ L+ I K ++ A +F GP G GKT++A+V A+ + Sbjct: 9 MYRPQSFEDVVGQEHVTKTLRNAISKEK-QSHAY---IFSGPRGTGKTSIAKVFAKAINC 64 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 F ST G + + +T + DV+ ID Sbjct: 65 -FNSTDGEPCNECH-ICKGITQGTNSDVIEID 94 >gi|198474425|ref|XP_001356680.2| GA17299 [Drosophila pseudoobscura pseudoobscura] gi|198138387|gb|EAL33745.2| GA17299 [Drosophila pseudoobscura pseudoobscura] Length = 1002 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 17/26 (65%), Positives = 18/26 (69%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFR 83 L GPPGLGKTTLA +AR G N R Sbjct: 425 LLCGPPGLGKTTLAHTIARHAGYNVR 450 >gi|189235677|ref|XP_971331.2| PREDICTED: similar to Peroxisomal biogenesis factor 6 [Tribolium castaneum] Length = 444 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT +A+ VA E G+ F S GP Sbjct: 202 ILLYGPPGTGKTLIAKAVATECGLCFLSVKGP 233 >gi|164655783|ref|XP_001729020.1| hypothetical protein MGL_3808 [Malassezia globosa CBS 7966] gi|159102909|gb|EDP41806.1| hypothetical protein MGL_3808 [Malassezia globosa CBS 7966] Length = 1228 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 ++F + K R+ VL GPPG GKT LA+ VA +NF S GP Sbjct: 844 ELFADGVKKRS----GVLLYGPPGTGKTLLAKAVATTCSLNFFSVKGP 887 >gi|149238059|ref|XP_001524906.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL YB-4239] gi|146451503|gb|EDK45759.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL YB-4239] Length = 832 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRDV---- 108 VL GPPG GKTT+A +A EL V F + S P I +G+ L +L E + V Sbjct: 232 VLLYGPPGCGKTTVANALAGELKVPFINISAPSIVSGMSGESEKKLRDLFEEAKSVAPCI 291 Query: 109 LFIDEIHRLS 118 +F+DEI ++ Sbjct: 292 IFMDEIDAIT 301 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 561 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 592 >gi|134097009|ref|YP_001102670.1| putative cell division protein [Saccharopolyspora erythraea NRRL 2338] gi|291006245|ref|ZP_06564218.1| putative cell division protein [Saccharopolyspora erythraea NRRL 2338] gi|133909632|emb|CAL99744.1| putative cell division protein [Saccharopolyspora erythraea NRRL 2338] Length = 795 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ R +AL VL GPPG GKT LA+ VA E GV F S SG Sbjct: 160 VEELHEIKDFLQNP-GRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 217 >gi|126696141|ref|YP_001091027.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9301] gi|126543184|gb|ABO17426.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9301] Length = 637 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|91773629|ref|YP_566321.1| AAA family ATPase, CDC48 subfamily protein [Methanococcoides burtonii DSM 6242] gi|91712644|gb|ABE52571.1| CDC48, AAA family ATPase [Methanococcoides burtonii DSM 6242] Length = 736 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108 VL GPPG GKT +A+ VA E NF SGP +I+K G+ L + E + Sbjct: 213 VLLYGPPGTGKTMIAKAVASESEANFIPISGPEIISKYYGESEQKLREIFEEAEKEGPTI 272 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 273 IFIDELDSIA 282 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E NF S GP Sbjct: 485 ILLFGPPGTGKTLLAKAVANESEANFISIKGP 516 >gi|87124413|ref|ZP_01080262.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. RS9917] gi|86167985|gb|EAQ69243.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. RS9917] Length = 638 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|150017878|ref|YP_001310132.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] gi|149904343|gb|ABR35176.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] Length = 627 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + ++ GQ EA +LK ++ K A+ L VGPPG GKT LA+ VA E Sbjct: 178 SFKDVAGQEEAKESLKEIVDFLHKPERYTKIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 237 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 V F S SG V A + L E + ++FIDEI Sbjct: 238 KVPFFSLSGSGFVEMFVGVGASRVRDLFAQAEKQAPCIIFIDEI 281 >gi|325968403|ref|YP_004244595.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28] gi|323707606|gb|ADY01093.1| AAA family ATPase [Vulcanisaeta moutnovskia 768-28] Length = 885 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--LAALLTNLED--RD 107 E + +L GPPG+GKT +A+ A L NF +G +A+ G AA++ ++ + RD Sbjct: 652 EPIHGILLFGPPGVGKTLVAKATANMLKANFIELNGAELARVGPERAAAVVKDVFNMARD 711 Query: 108 ----VLFIDEIHRLS 118 ++FIDEI ++ Sbjct: 712 NTPAIIFIDEIDSVA 726 >gi|322495155|emb|CBZ30459.1| putative ruvb-like 1 DNA helicase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 459 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQ +A + +E +++ A +LF GPPG GKT LA +A+ELG Sbjct: 42 FVGQEKAREAAGIAVELIRSKKMAGRALLFAGPPGTGKTALALGIAKELG 91 >gi|321457088|gb|EFX68181.1| hypothetical protein DAPPUDRAFT_114746 [Daphnia pulex] Length = 699 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E ++F S GP Sbjct: 551 VLLYGPPGTGKTLLAKAVATECNLHFLSVKGP 582 >gi|297670091|ref|XP_002813209.1| PREDICTED: ruvB-like 1-like [Pongo abelii] Length = 478 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 49 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 108 Query: 78 LG 79 LG Sbjct: 109 LG 110 >gi|290891315|ref|ZP_06554376.1| hypothetical protein AWRIB429_1766 [Oenococcus oeni AWRIB429] gi|290478961|gb|EFD87624.1| hypothetical protein AWRIB429_1766 [Oenococcus oeni AWRIB429] Length = 421 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 26/126 (20%) Query: 25 RTLEEFT-GQVEACSNLKVFIEAAKARA-EALDH----------VLFVGPPGLGKTTLAQ 72 + L E+ GQ EA L V + R E+L H +L +GP G GKT LAQ Sbjct: 72 KHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSGKTYLAQ 131 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118 +A+ L V F + +AG + + N+ R +++IDEI +++ Sbjct: 132 SLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQRGIIYIDEIDKIA 191 Query: 119 IIVEEI 124 E + Sbjct: 192 KKSENV 197 >gi|283781755|ref|YP_003372510.1| ATPase associated with various cellular activities AAA_3 [Pirellula staleyi DSM 6068] gi|283440208|gb|ADB18650.1| ATPase associated with various cellular activities AAA_3 [Pirellula staleyi DSM 6068] Length = 328 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 34/188 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106 H+LF PGLGKTTLA+ +A +G F R P + + L N + R Sbjct: 56 HLLFDDLPGLGKTTLAKALATAVGGRFARVQCTPDLLPSDITGFNLFNQQSREFEFVSGP 115 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 DVL DEI+R + + L+ AM + Q+ + +S K++ + F + Sbjct: 116 VFSDVLLADEINRATPRTQSALFEAMAERQVTI------DNQSRKLSDTFFVIATQNPVE 169 Query: 164 GLLTNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219 PL DRF + +R+ + RG++L LA + + R G+P Sbjct: 170 SHGAYPLPEAQLDRFAMKLRIGYPS---------RGSELAMLAAQVGVSSD---RPAGSP 217 Query: 220 RIAGRLLR 227 + LR Sbjct: 218 VVDPSQLR 225 >gi|262372887|ref|ZP_06066166.1| methanol dehydrogenase regulatory protein [Acinetobacter junii SH205] gi|262312912|gb|EEY93997.1| methanol dehydrogenase regulatory protein [Acinetobacter junii SH205] Length = 319 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 12/88 (13%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDR-------- 106 HVLF PGLGKTTLA +AR G++F+ A D+ + + N ++ Sbjct: 60 HVLFEDLPGLGKTTLASALARLAGLHFQRIQFTNDMLASDVIGINIFNQKEHIFEFKKGP 119 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMED 131 +L DEI+R S + L AME+ Sbjct: 120 VFTQILLADEINRCSPKTQSALLEAMEE 147 >gi|225713814|gb|ACO12753.1| Replication factor C subunit 2 [Lepeophtheirus salmonis] Length = 325 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77 I RP+T ++ G E S L F A +++ GPPG+GKTT +AR Sbjct: 13 IEKYRPKTFDDIVGNSETVSRLTTFAHDGNA-----PNIIISGPPGVGKTTTILCLARAL 67 Query: 78 LGVNFR 83 LG +F+ Sbjct: 68 LGSSFK 73 >gi|224011257|ref|XP_002295403.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209583434|gb|ACI64120.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 208 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 14/147 (9%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAK-AGDLAALLTNL----EDRDVL 109 +L GPPG GKT LA+ VA E + S GP +++K G+ A + L + V+ Sbjct: 1 ILLHGPPGCGKTKLAKAVAGEAQAAYLSV-GPSDILSKYVGESEASVRGLFLEGDKCAVI 59 Query: 110 FIDEIHRL--SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 F DEI L S + E++ P G+ +A + R ++AAT R Sbjct: 60 FFDEIDALGRSRVDEDVQTPTRSSSS----AGKQGNAVKPRQPKPRVIVVAATNRPEDCD 115 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194 L RF + + +D K I++R Sbjct: 116 PALLRRFACRVLVGLPSRKDRKKIIKR 142 >gi|157413172|ref|YP_001484038.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str. MIT 9215] gi|254526354|ref|ZP_05138406.1| ATP-dependent metallopeptidase HflB subfamily protein [Prochlorococcus marinus str. MIT 9202] gi|157387747|gb|ABV50452.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str. MIT 9215] gi|221537778|gb|EEE40231.1| ATP-dependent metallopeptidase HflB subfamily protein [Prochlorococcus marinus str. MIT 9202] Length = 637 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|254361749|ref|ZP_04977884.1| S14 family endopeptidase ClpX [Mannheimia haemolytica PHL213] gi|153093284|gb|EDN74280.1| S14 family endopeptidase ClpX [Mannheimia haemolytica PHL213] Length = 415 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 118 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFEA 177 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++FIDEI +++ Sbjct: 178 EQAERGIVFIDEIDKIT 194 >gi|120599413|ref|YP_963987.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp. W3-18-1] gi|146292591|ref|YP_001183015.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella putrefaciens CN-32] gi|166215204|sp|A4Y5I3|CLPX_SHEPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166215206|sp|A1RL88|CLPX_SHESW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|120559506|gb|ABM25433.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella sp. W3-18-1] gi|145564281|gb|ABP75216.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella putrefaciens CN-32] Length = 426 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|120436181|ref|YP_861867.1| DNA polymerase III subunit gamma/tau [Gramella forsetii KT0803] gi|117578331|emb|CAL66800.1| DNA polymerase III subunit gamma/tau [Gramella forsetii KT0803] Length = 653 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 49/233 (21%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T ++ GQ +A +N A+AL LF GP G+GKTT A+++A+ +N Sbjct: 12 RPQTFKDVVGQ-QAITNTLANAINNNHLAQAL---LFTGPRGVGKTTCARILAK--MINQ 65 Query: 83 RSTSGP----------VIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVE 122 + T P + A + + + NL D+ V IDE+H LS Sbjct: 66 KETQDPNEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGNYKVYIIDEVHMLSASA- 124 Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182 F L E P ++ I ATT + + R I +F Sbjct: 125 ---------FNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI---FDF 164 Query: 183 YEI--EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 I D K + A+ G+ D+A IA ++ G R A + RV F+ Sbjct: 165 KRITVTDAKNYLAHIAEQEGVNAEDDALHIIAQKADGAMRDALSIYDRVVSFS 217 >gi|93359803|gb|ABF13334.1| RUVBL1-FK [Homo sapiens] Length = 386 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|24373361|ref|NP_717404.1| ATP-dependent protease ATP-binding subunit [Shewanella oneidensis MR-1] gi|46576583|sp|Q8EG18|CLPX_SHEON RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|24347624|gb|AAN54848.1|AE015624_1 ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella oneidensis MR-1] Length = 426 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|87302738|ref|ZP_01085549.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH 5701] gi|87282621|gb|EAQ74579.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH 5701] Length = 641 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 219 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 249 >gi|332669946|ref|YP_004452954.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas fimi ATCC 484] gi|332338984|gb|AEE45567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas fimi ATCC 484] Length = 425 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ D Sbjct: 112 AKSNILLVGPTGTGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 171 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 172 YDVKKAEQGIIYIDEIDKIA 191 >gi|312374261|gb|EFR21850.1| hypothetical protein AND_16263 [Anopheles darlingi] Length = 681 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 517 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 576 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 577 IFIDEIDSL 585 >gi|260101304|ref|ZP_05751541.1| AAA family ATPase [Lactobacillus helveticus DSM 20075] gi|260084889|gb|EEW69009.1| AAA family ATPase [Lactobacillus helveticus DSM 20075] Length = 89 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 7/64 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLF 110 ++ GPPG GKTTLA+++A+ +F + S V + D+ ++ E ++ ++F Sbjct: 13 LILWGPPGTGKTTLAEIIAKRTKAHFITFSA-VTSSIKDIRKIMEEAEQNRQFGEKTIVF 71 Query: 111 IDEI 114 IDEI Sbjct: 72 IDEI 75 >gi|297570186|ref|YP_003691530.1| ATP-dependent protease La [Desulfurivibrio alkaliphilus AHT2] gi|296926101|gb|ADH86911.1| ATP-dependent protease La [Desulfurivibrio alkaliphilus AHT2] Length = 790 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 17/30 (56%), Positives = 21/30 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 + FVGPPG+GKT+L Q +AR LG F S Sbjct: 369 LCFVGPPGVGKTSLGQSIARALGRKFHRIS 398 >gi|223985489|ref|ZP_03635548.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM 12042] gi|223962578|gb|EEF67031.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM 12042] Length = 619 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +T ++ GQ EA L ++ K A+ L VGPPG GKT LA+ VA E Sbjct: 163 KTFQDVAGQDEAKEALSEIVDFLHNPDKYKKLGAKMPKGALLVGPPGTGKTLLAKAVAGE 222 Query: 78 LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 V F S SG + A + L +++ ++FIDEI Sbjct: 223 ANVPFFSISGSEFVEMFVGMGAARVRDLFKQAQEKAPCIVFIDEI 267 >gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis] gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis] Length = 332 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP L++ E S + FI + L H+LF GPPG GKT+ AR+L Sbjct: 18 RPNCLDDLISHEEIISTINRFINQKQ-----LPHLLFYGPPGTGKTSTILACARQL 68 >gi|168002938|ref|XP_001754170.1| predicted protein [Physcomitrella patens subsp. patens] gi|162694724|gb|EDQ81071.1| predicted protein [Physcomitrella patens subsp. patens] Length = 958 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ +A E GV F +G + G AA + +L R V Sbjct: 455 VLLEGPPGCGKTLLAKAIAGEAGVPFYQMAGSEFVEVLVGVGAARIRDLFKRAKVNRPSV 514 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 515 VFIDEIDAL 523 >gi|159027910|emb|CAO89717.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 600 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 182 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 212 >gi|156840873|ref|XP_001643814.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM 70294] gi|156114440|gb|EDO15956.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM 70294] Length = 839 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 578 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 609 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT++A +A EL V F S S P + +G+ + +L D + Sbjct: 247 VLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEAKAIAPCL 306 Query: 109 LFIDEIHRLS 118 +F DEI ++ Sbjct: 307 MFFDEIDAIT 316 >gi|118103080|ref|XP_001232112.1| PREDICTED: similar to ATP-dependent Lon protease [Gallus gallus] Length = 790 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 33/209 (15%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTT 69 S+E+ ++S + E+ G + + FI ++ R +L F GPPG+GKT+ Sbjct: 363 KCSEENLELSRAQAVLEEDHYGMDDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTS 422 Query: 70 LAQVVARELGVN-FRSTSG--------------PVIAKAGDLAALLTNLEDRD-VLFIDE 113 +A+ +AR L FR + G V A G + L + + ++ IDE Sbjct: 423 IARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDE 482 Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 + ++ S + E+L P LD + V ++LS+ I Sbjct: 483 VDKIGRGYQGDPSSALLELLDPEQNSNFLDHYL-------DVPVDLSKVLFICTANVTET 535 Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + PL+DR + I ++ Y E+ I +R Sbjct: 536 IPEPLRDRMEV-INVSGYVAEEKLAIAER 563 >gi|111225921|ref|YP_716715.1| cell division protein FtsH [Frankia alni ACN14a] gi|111153453|emb|CAJ65211.1| Cell division protein FtsH (ATP-dependent zinc-metallo protease) [Frankia alni ACN14a] Length = 739 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +E +K F+E A+ VL GPPG GKT LA+ VA E GV F S SG Sbjct: 167 IEELQEIKEFLENPSKFQAIGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 224 >gi|148225893|ref|NP_001083856.1| ruvB-like 1 [Xenopus laevis] gi|49256030|gb|AAH71105.1| Ruvbl1 protein [Xenopus laevis] Length = 456 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 EAC V +E K++ A VL GPPG GKT LA +A+ELG Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 >gi|78779135|ref|YP_397247.1| FtsH peptidase [Prochlorococcus marinus str. MIT 9312] gi|78712634|gb|ABB49811.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus str. MIT 9312] Length = 637 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|116621421|ref|YP_823577.1| ATPase central domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116224583|gb|ABJ83292.1| AAA ATPase, central domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 482 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 13/128 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLF 110 VL GPPG GKTT+ + +A L F G V+A GD + + + V+F Sbjct: 269 VLLAGPPGTGKTTIGRALAHRLKSKFFLIDGTVVAGTGDFYCQVRQIFEAARRNAPSVIF 328 Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFT---LIAATTRVGLL 166 ID+ +I E P + + L ++ G E SA V + ++ L AA R G + Sbjct: 329 IDDT---DVIFEGDGDPGLYRYLLTMLDGLESASAGRVCVMMTAMNPGALPAAMLRSGRV 385 Query: 167 TNPLQDRF 174 L+ R Sbjct: 386 ELWLETRL 393 >gi|325961735|ref|YP_004239641.1| membrane protease FtsH catalytic subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323467822|gb|ADX71507.1| membrane protease FtsH catalytic subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 687 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 177 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 234 >gi|317970009|ref|ZP_07971399.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. CB0205] Length = 645 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 218 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 248 >gi|301607045|ref|XP_002933113.1| PREDICTED: ruvB-like 1 [Xenopus (Silurana) tropicalis] Length = 456 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 EAC V +E K++ A VL GPPG GKT LA +A+ELG Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 >gi|298292193|ref|YP_003694132.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Starkeya novella DSM 506] gi|296928704|gb|ADH89513.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Starkeya novella DSM 506] Length = 423 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 111 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 170 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 171 YNVERAQRGIVYIDEIDKIS 190 >gi|291518252|emb|CBK73473.1| ATP-dependent metalloprotease FtsH [Butyrivibrio fibrisolvens 16/4] Length = 515 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 V+ VGPPG GKT LA+ +A E GV F S SG Sbjct: 86 VILVGPPGTGKTLLAKAIAGEAGVPFFSISG 116 >gi|254818503|ref|ZP_05223504.1| DNA polymerase III subunits gamma and tau [Mycobacterium intracellulare ATCC 13950] Length = 615 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ L + +EA + ++H LF GP G GKT+ A+++AR L Sbjct: 8 RPATFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCA 62 Query: 82 FRSTSGPV 89 T+ P Sbjct: 63 QGPTATPC 70 >gi|242095232|ref|XP_002438106.1| hypothetical protein SORBIDRAFT_10g008130 [Sorghum bicolor] gi|241916329|gb|EER89473.1| hypothetical protein SORBIDRAFT_10g008130 [Sorghum bicolor] Length = 687 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 261 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 291 >gi|228478308|ref|ZP_04062916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus salivarius SK126] gi|228249987|gb|EEK09257.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus salivarius SK126] Length = 408 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 112 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 171 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 172 ERAERGIIYVDEIDKIA 188 >gi|227821607|ref|YP_002825577.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium fredii NGR234] gi|254763858|sp|C3MA45|CLPX_RHISN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|227340606|gb|ACP24824.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sinorhizobium fredii NGR234] Length = 425 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192 >gi|209521468|ref|ZP_03270175.1| AAA ATPase central domain protein [Burkholderia sp. H160] gi|209498098|gb|EDZ98246.1| AAA ATPase central domain protein [Burkholderia sp. H160] Length = 633 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 23/35 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 +L VG PG+GKT LAQ +A E G NF S +G + Sbjct: 225 ILMVGAPGVGKTRLAQALAGECGANFVSITGSYFS 259 >gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis] gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis] Length = 332 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP L++ E S + FI + L H+LF GPPG GKT+ AR+L Sbjct: 18 RPNCLDDLISHEEIISTINRFINQKQ-----LPHLLFYGPPGTGKTSTILACARQL 68 >gi|220927144|ref|YP_002502446.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium nodulans ORS 2060] gi|254763854|sp|B8IN27|CLPX_METNO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|219951751|gb|ACL62143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacterium nodulans ORS 2060] Length = 423 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|146099593|ref|XP_001468685.1| ruvb-like 1 DNA helicase [Leishmania infantum] gi|134073053|emb|CAM71773.1| putative ruvb-like 1 DNA helicase [Leishmania infantum JPCM5] gi|322502722|emb|CBZ37805.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 459 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQ +A + +E +++ A +LF GPPG GKT LA +A+ELG Sbjct: 42 FVGQEKAREAAGIAVELIRSKKMAGRALLFAGPPGTGKTALALGIAKELG 91 >gi|109075576|ref|XP_001104133.1| PREDICTED: spermatogenesis-associated protein 5-like isoform 3 [Macaca mulatta] Length = 892 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 389 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 448 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 449 IFIDELDALC 458 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 15/32 (46%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG KT +A+ +A E G+NF + GP Sbjct: 663 ILLYGPPGCSKTMIAKALANESGLNFLAIKGP 694 >gi|73984470|ref|XP_856885.1| PREDICTED: similar to RuvB-like protein 1 isoform 3 [Canis familiaris] Length = 353 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|148547674|ref|YP_001267776.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida F1] gi|310946757|sp|A5W382|FTSH_PSEP1 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|148511732|gb|ABQ78592.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida F1] Length = 615 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 9/118 (7%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQV-EACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 +R + D ++ +++ G++ E S LK A+ A L VGPPG GK Sbjct: 145 ARVYVEHDTQVTFADVAGIDDVKGELTEIVSFLKNKAWYARLGAHVPKGTLLVGPPGTGK 204 Query: 68 TTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRL 117 T +A+ +A E V F S SG + G AA + +L D+ ++FIDE+ L Sbjct: 205 TLVAKAIAGEAAVPFFSISGSEFVEMFVGVGAARVRDLFDQARQAAPCIIFIDELDAL 262 >gi|186682152|ref|YP_001865348.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] gi|186464604|gb|ACC80405.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] Length = 642 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 224 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 254 >gi|330801691|ref|XP_003288858.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum] gi|325081104|gb|EGC34633.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum] Length = 348 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%) Query: 49 ARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVNF 82 ++ L H+LF GPPG GKT+ Q +AR+L G N+ Sbjct: 50 TKSNTLPHLLFYGPPGTGKTSTIQAIARKLYGENY 84 >gi|312377133|gb|EFR24044.1| hypothetical protein AND_11679 [Anopheles darlingi] Length = 552 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 310 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 369 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 370 IFIDEIDSL 378 >gi|310798050|gb|EFQ32943.1| ATPase [Glomerella graminicola M1.001] Length = 1041 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 10/75 (13%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH----------VLFVGPPGLGKTTLAQVVA 75 T + E +NLK+ + R EA + L GPPG GKT LA+ VA Sbjct: 729 TFADVHADPETKNNLKLLTSLSLVRPEAFTYGVLATDRIPGCLLYGPPGTGKTLLAKAVA 788 Query: 76 RELGVNFRSTSGPVI 90 +E N SG I Sbjct: 789 KESSANMLEVSGASI 803 >gi|309792212|ref|ZP_07686684.1| ATP-dependent protease La [Oscillochloris trichoides DG6] gi|308225753|gb|EFO79509.1| ATP-dependent protease La [Oscillochloris trichoides DG6] Length = 814 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 114/273 (41%), Gaps = 55/273 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L + +AR L F R++ G V +A G + + Sbjct: 374 LCFVGPPGVGKTSLGRSIARSLNRQFIRTSLGGVRDEAEIRGHRRTYIGAMPGRVIQGMK 433 Query: 102 NLEDRDVLFI-DEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 +++ ++I DE+ ++ + + E+L P + D + + +LS Sbjct: 434 SVKSNSPVYILDEVDKVGTDFRGDPTSALLEVLDPEQNNTFSDHYL-------EIPFDLS 486 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG---AKLTGLAVTDEAAC 209 + IA ++ + PL+DR I I + Y ED K + RG K Sbjct: 487 KVIFIATANQLEPIPGPLRDRMEI-IEIGGY-TEDEKLGIARGFLVPKQREFHGLQPEQL 544 Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM------GFDQL 263 EI G +L+ VR++ A + + RE+ A L R K+ G + Sbjct: 545 EIT---------DGAVLKLVREYTREAGVRNLEREL--ATLCRKVARKVASATEPGAESG 593 Query: 264 DLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296 RY+ I + +G E + GL+E RD I Sbjct: 594 PERYV--IDTDDVATYLGPERFTFGLAEERDEI 624 >gi|297834890|ref|XP_002885327.1| hypothetical protein ARALYDRAFT_479491 [Arabidopsis lyrata subsp. lyrata] gi|297331167|gb|EFH61586.1| hypothetical protein ARALYDRAFT_479491 [Arabidopsis lyrata subsp. lyrata] Length = 1003 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E G NF S +G + GD L L + Sbjct: 752 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVI 811 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 812 IFVDEVDSL 820 >gi|296535580|ref|ZP_06897761.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957] gi|296264096|gb|EFH10540.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957] Length = 622 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L VGPPG GKT +A+ +A E GV+F S SG + G AA + +L ++ + Sbjct: 192 ILLVGPPGTGKTLVARAIAGEAGVSFFSISGSEFVEMFVGVGAARVRDLFEQARKAAPCI 251 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 252 IFIDELDAL 260 >gi|294101894|ref|YP_003553752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aminobacterium colombiense DSM 12261] gi|293616874|gb|ADE57028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aminobacterium colombiense DSM 12261] Length = 429 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +VL +GP G GKT LAQ +A++L V F + +AG D+ +L L Sbjct: 124 NVLLIGPTGSGKTLLAQSLAKKLNVPFAMADATTLTEAGYVGEDVENILVRLLQAADYDI 183 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDE+ +++ Sbjct: 184 QAAERGIIYIDELDKIT 200 >gi|240168347|ref|ZP_04747006.1| hypothetical protein MkanA1_03482 [Mycobacterium kansasii ATCC 12478] Length = 573 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 14/78 (17%) Query: 4 REGLLSRNVSQEDADISLLRPRT-LEEF-----TGQVEACSNLKVFIEAAKARAEALDHV 57 RE LL+ ++ D I L R + +E + +V A +KV A+ H+ Sbjct: 279 RERLLAEAQAELDRQIGLTRVKAQIERYRAATMMARVRAAKGMKV--------AQPSKHM 330 Query: 58 LFVGPPGLGKTTLAQVVA 75 +F GPPG GKTT+A+VVA Sbjct: 331 IFTGPPGTGKTTIARVVA 348 >gi|255712125|ref|XP_002552345.1| KLTH0C02684p [Lachancea thermotolerans] gi|238933724|emb|CAR21907.1| KLTH0C02684p [Lachancea thermotolerans] Length = 1019 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L G PG GKT LA VA++ G+NF S GP I Sbjct: 718 ILLYGYPGCGKTMLASAVAQQCGLNFISIKGPEI 751 >gi|260939716|ref|XP_002614158.1| hypothetical protein CLUG_05644 [Clavispora lusitaniae ATCC 42720] gi|238852052|gb|EEQ41516.1| hypothetical protein CLUG_05644 [Clavispora lusitaniae ATCC 42720] Length = 805 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 59/250 (23%), Positives = 98/250 (39%), Gaps = 47/250 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98 + GPPG GKT++A+ +A L + R+ G + + +AA Sbjct: 573 LCLAGPPGTGKTSIAKSIAEALDRRYVRIAMGGIQDVHEVKGHRRTYIGSIPGRI--IAA 630 Query: 99 LLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150 L + ++ IDEI +L + EIL P + +D + VK++ Sbjct: 631 LKSAKTSNPLMLIDEIDKLDLSRSGGAASAFLEILDPEQNNAFVDNYI-------DVKVD 683 Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDE 206 LS+ + +G + PL+DR + + E L K ++ + AK GL DE Sbjct: 684 LSKVLFVCTANYLGNIPGPLRDRMEVIDVSGYTNNEKLEIARKHLIPQAAKKAGL---DE 740 Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266 + I + I + + R+ K ITR + A+L + + DQ R Sbjct: 741 SHVVIPEET-----ITTLIEKYCRESGLRNIKKLITRIFSKASLKIVEELEEKGDQGGKR 795 Query: 267 YLTMIARNFG 276 RNFG Sbjct: 796 ADGNFQRNFG 805 >gi|256374468|ref|YP_003098128.1| ATP-dependent metalloprotease FtsH [Actinosynnema mirum DSM 43827] gi|255918771|gb|ACU34282.1| ATP-dependent metalloprotease FtsH [Actinosynnema mirum DSM 43827] Length = 743 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ R +AL VL GPPG GKT LA+ VA E GV F S SG Sbjct: 175 VEELYEIKDFLQNP-GRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 232 >gi|226324935|ref|ZP_03800453.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758] gi|225206283|gb|EEG88637.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758] Length = 587 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 184 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 243 Query: 109 LFIDEI 114 +FIDEI Sbjct: 244 VFIDEI 249 >gi|224068787|ref|XP_002302825.1| predicted protein [Populus trichocarpa] gi|222844551|gb|EEE82098.1| predicted protein [Populus trichocarpa] Length = 485 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 269 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 299 >gi|149926125|ref|ZP_01914387.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105] gi|149824943|gb|EDM84155.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105] Length = 423 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 113 NILLVGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQSCNYEV 172 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 173 EKAQRGIVYIDEIDKIS 189 >gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 342 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60 M+D E + + RPR +++ Q + L+ ++ + H LF Sbjct: 1 MVDAEATRPQRAEAHAPWVEKYRPRVVKDVASQEQIVGVLENALKTGN-----MPHCLFY 55 Query: 61 GPPGLGKTTLAQVVAREL 78 GPPG GKTT A +A+EL Sbjct: 56 GPPGTGKTTTALAIAKEL 73 >gi|124266486|ref|YP_001020490.1| ATP-dependent protease ATP-binding subunit ClpX [Methylibium petroleiphilum PM1] gi|166214784|sp|A2SFB6|CLPX_METPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|124259261|gb|ABM94255.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Methylibium petroleiphilum PM1] Length = 423 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104 A ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 AKSNILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 175 Query: 105 ------DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 YEVERAQRGIVYIDEIDKIS 195 >gi|116074799|ref|ZP_01472060.1| hypothetical protein RS9916_29734 [Synechococcus sp. RS9916] gi|116068021|gb|EAU73774.1| hypothetical protein RS9916_29734 [Synechococcus sp. RS9916] Length = 638 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|169767788|ref|XP_001818365.1| replication factor C subunit 2 [Aspergillus oryzae RIB40] gi|83766220|dbj|BAE56363.1| unnamed protein product [Aspergillus oryzae] Length = 391 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 +Q+ + RP+TL++ Q + L+ ++A+ L H+LF GPPG GKT+ Sbjct: 33 AQQQPWVEKYRPKTLDDVAAQDHTTNVLQRTLQASN-----LPHMLFYGPPGTGKTSTIL 87 Query: 73 VVAREL 78 +A+ L Sbjct: 88 ALAKSL 93 >gi|15965009|ref|NP_385362.1| ATP-dependent protease ATP-binding subunit [Sinorhizobium meliloti 1021] gi|307301081|ref|ZP_07580850.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium meliloti BL225C] gi|307317815|ref|ZP_07597253.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium meliloti AK83] gi|21263475|sp|Q92QQ2|CLPX_RHIME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|15074188|emb|CAC45835.1| Probable ATP-dependent CLP protease ATP-binding subunit [Sinorhizobium meliloti 1021] gi|306896577|gb|EFN27325.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium meliloti AK83] gi|306904036|gb|EFN34622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium meliloti BL225C] Length = 425 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192 >gi|118581608|ref|YP_902858.1| ATP-dependent protease La [Pelobacter propionicus DSM 2379] gi|118504318|gb|ABL00801.1| ATP-dependent protease La [Pelobacter propionicus DSM 2379] Length = 771 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 40/159 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L + +AR LG F R + G + +A G + L R Sbjct: 352 LCFVGPPGVGKTSLGKSIARSLGRKFVRISLGGMRDEAEIRGHRRTYIGALPGRIIKEIF 411 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 V +DEI +L + + E+L P + +D LD V Sbjct: 412 RCGSNNPVFMLDEIDKLGQDFRGDPASALLEVLDPEQNFSFQDHYLD-----------VP 460 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187 +LS+ I ++ + PL+DR + IRL Y E+ Sbjct: 461 FDLSKVMFITTANQLDPIPGPLKDRMEV-IRLAGYSTEE 498 >gi|116747550|ref|YP_844237.1| ATP-dependent protease ATP-binding subunit ClpX [Syntrophobacter fumaroxidans MPOB] gi|116696614|gb|ABK15802.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Syntrophobacter fumaroxidans MPOB] Length = 417 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L +L Sbjct: 112 NILMIGPTGSGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVSLIQAADYDI 171 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 172 EKASRGIVYIDEIDKIA 188 >gi|307825991|ref|ZP_07656205.1| ATP-dependent protease La [Methylobacter tundripaludum SV96] gi|307732966|gb|EFO03829.1| ATP-dependent protease La [Methylobacter tundripaludum SV96] Length = 806 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 52/247 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-------GDLAALLTNL----- 103 + FVGPPG+GKT+L + +AR G F R++ G +A + AL N+ Sbjct: 381 LCFVGPPGVGKTSLGRSIARATGREFIRASLGGTHDEAEIRGHRRTYIGALPGNIIQSIR 440 Query: 104 ---EDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + V +DE+ +L S + E+L P D + +V +LS Sbjct: 441 KAGTNNPVFMLDEMDKLGSGFQGDPSSALLEVLDPEQNSTFRDNYL-------AVAFDLS 493 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEA 207 I + + PL+DR + I L Y ++ + +VQR + +GL A Sbjct: 494 HVMFIGTANVLDSIPGPLRDRMEV-IELTGYTTDEKLQIAKRYLVQRQLESSGLTPEQCA 552 Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA---ALLRLAIDKMGFDQLD 264 E A +L ++D+ A + + REI +R+A + +Q+D Sbjct: 553 ITENA------------ILTIIQDYTREAGCRNLEREIGSVFRHVAMRIAESLVVNEQID 600 Query: 265 LRYLTMI 271 ++ I Sbjct: 601 SEHIPGI 607 >gi|303390791|ref|XP_003073626.1| replication factor C [Encephalitozoon intestinalis ATCC 50506] gi|303302773|gb|ADM12266.1| replication factor C [Encephalitozoon intestinalis ATCC 50506] Length = 309 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 ++ RP +++ G + + I++ + + H+LF GPPG GKTT A+++AR+L Sbjct: 5 VNKYRPNEVQDVIGNQMTVELVSLIIDS-----KDMPHLLFAGPPGTGKTTCAKILARKL 59 >gi|289707001|ref|ZP_06503336.1| ATP-dependent metallopeptidase HflB [Micrococcus luteus SK58] gi|289556326|gb|EFD49682.1| ATP-dependent metallopeptidase HflB [Micrococcus luteus SK58] Length = 696 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 202 VLLYGPPGTGKTLLAKAVAGEAGVPFYSISG 232 >gi|260589156|ref|ZP_05855069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia hansenii DSM 20583] gi|260540576|gb|EEX21145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia hansenii DSM 20583] Length = 456 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 28/130 (21%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGP 62 +I+LL+P+ ++E GQ EA L V + R + ++L +GP Sbjct: 80 GEINLLKPQEIKEILDEYVIGQDEAKKVLSVAVYNHYKRVLSGGNTDVELQKSNILMLGP 139 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------V 108 G GKT LAQ +AR L V F + +AG + + N+ D D + Sbjct: 140 TGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYGI 199 Query: 109 LFIDEIHRLS 118 ++IDEI +++ Sbjct: 200 IYIDEIDKIT 209 >gi|224418139|ref|ZP_03656145.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491] gi|253827466|ref|ZP_04870351.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491] gi|313141674|ref|ZP_07803867.1| atpase-ATP-dependent zn protease [Helicobacter canadensis MIT 98-5491] gi|253510872|gb|EES89531.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491] gi|313130705|gb|EFR48322.1| atpase-ATP-dependent zn protease [Helicobacter canadensis MIT 98-5491] Length = 555 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 15/103 (14%) Query: 27 LEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVARELG 79 E+ G EA LK ++ K+ + D VL VGPPG+GKT +A+ +A E Sbjct: 156 FEDVAGITEAKEELKEIVDYLKSPKKYQDFGVKLPKGVLLVGPPGVGKTLIAKALAGEAK 215 Query: 80 VNFRSTSGPVIAK------AGDLAALLT--NLEDRDVLFIDEI 114 V F SG + A + L T L ++FIDEI Sbjct: 216 VPFYYQSGASFVQIYVGMGAKRVHDLFTKAKLNAPAIIFIDEI 258 >gi|184152912|ref|YP_001841253.1| cell division protein FtsH [Lactobacillus reuteri JCM 1112] gi|183224256|dbj|BAG24773.1| cell division protein FtsH [Lactobacillus reuteri JCM 1112] Length = 680 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 44/89 (49%), Gaps = 11/89 (12%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 VE N K F K A VL GPPG GKT LA+ VA E GV F S SG + Sbjct: 189 VEFLKNPKKF---TKLGARIPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM 245 Query: 93 -AGDLAALLTNLEDR------DVLFIDEI 114 G A+ + +L D+ ++FIDEI Sbjct: 246 FVGVGASRVRDLFDQAKKAAPAIIFIDEI 274 >gi|172036958|ref|YP_001803459.1| cell division protein [Cyanothece sp. ATCC 51142] gi|171698412|gb|ACB51393.1| cell division protein [Cyanothece sp. ATCC 51142] Length = 660 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S S + G AA + +L ++ + Sbjct: 244 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFEQAKKQAPCI 303 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 304 IFIDEL 309 >gi|209548851|ref|YP_002280768.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238066658|sp|B5ZY09|CLPX_RHILW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|209534607|gb|ACI54542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 425 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 172 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192 >gi|170744619|ref|YP_001773274.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium sp. 4-46] gi|238688059|sp|B0UD19|CLPX_METS4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|168198893|gb|ACA20840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacterium sp. 4-46] Length = 423 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|114563761|ref|YP_751274.1| ATP-dependent protease ATP-binding subunit [Shewanella frigidimarina NCIMB 400] gi|122299289|sp|Q07ZX9|CLPX_SHEFN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|114335054|gb|ABI72436.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella frigidimarina NCIMB 400] Length = 426 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 115 NILLLGPTGSGKTLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 175 EKAERGIVYIDEIDKIS 191 >gi|222055724|ref|YP_002538086.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp. FRC-32] gi|254763849|sp|B9M0Y2|CLPX_GEOSF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|221565013|gb|ACM20985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp. FRC-32] Length = 417 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 25/117 (21%) Query: 27 LEEFT-GQVEACSNLKVFIEAAKARAEAL----------DHVLFVGPPGLGKTTLAQVVA 75 L+E+ GQ +A L V + R EA+ ++L +GP G GKT LAQ +A Sbjct: 73 LDEYVIGQKQAKKVLAVAVYNHYKRIEAMTKPGEVEMQKSNILLLGPTGSGKTLLAQTLA 132 Query: 76 RELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------LFIDEIHRLS 118 R L V F + +AG D+ ++ NL D DV ++IDEI +++ Sbjct: 133 RILKVPFAMADATNLTEAGYVGEDVENIILNLLQAADYDVERAQKGIIYIDEIDKIA 189 >gi|332820137|ref|XP_003310499.1| PREDICTED: spermatogenesis-associated protein 5 isoform 1 [Pan troglodytes] Length = 790 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 450 IFIDELDAL 458 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695 >gi|312863135|ref|ZP_07723373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus vestibularis F0396] gi|311100671|gb|EFQ58876.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus vestibularis F0396] Length = 408 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 112 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 171 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 172 ERAERGIIYVDEIDKIA 188 >gi|303245833|ref|ZP_07332115.1| ATP-dependent protease La [Desulfovibrio fructosovorans JJ] gi|302492616|gb|EFL52484.1| ATP-dependent protease La [Desulfovibrio fructosovorans JJ] Length = 819 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 51/223 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L + +AR LG F R + G + +A G + ++ R Sbjct: 388 LCFVGPPGVGKTSLGRSIARALGRKFVRMSLGGMRDEAEIRGHRRTYIGSMPGRVIQSIK 447 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMED-FQLDLMVGEGPSARSVKINL 151 V+ +DEI ++ S + E+L P + FQ + +V +L Sbjct: 448 QAGTRNPVIMLDEIDKVGSDFRGDPSSALLEVLDPEQNNTFQDHYL--------NVPFDL 499 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT----IVQRGAKLTGLAVTDEA 207 S+ I + + PL DR + + E E +K I+ R K GL D Sbjct: 500 SKVMFICTANILDTIPGPLLDRMELIQLPGYTEQEKVKIARRYILPRQIKENGLEPGDMT 559 Query: 208 ACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTITREIADAA 249 I+ +++ RV RD+ A + + REI A Sbjct: 560 -------------ISDKVVARVIRDYTREAGLRNLEREIGSVA 589 >gi|300859209|ref|YP_003784192.1| cell division protein [Corynebacterium pseudotuberculosis FRC41] gi|300686663|gb|ADK29585.1| cell division protein [Corynebacterium pseudotuberculosis FRC41] gi|302206898|gb|ADL11240.1| Cell division protease ftsH-like protein [Corynebacterium pseudotuberculosis C231] gi|302331465|gb|ADL21659.1| Cell division protein [Corynebacterium pseudotuberculosis 1002] gi|308277152|gb|ADO27051.1| Cell division protein [Corynebacterium pseudotuberculosis I19] Length = 667 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 35/70 (50%), Gaps = 9/70 (12%) Query: 26 TLEEFTGQVEACSNL---KVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77 T + G EA L K F+E +R E L VL GPPG GKT LA+ VA E Sbjct: 161 TFADVAGAEEAVDELHEIKDFLEDP-SRYEQLGAKIPRGVLLYGPPGTGKTLLARAVAGE 219 Query: 78 LGVNFRSTSG 87 GV F S SG Sbjct: 220 AGVPFYSISG 229 >gi|289423791|ref|ZP_06425586.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L] gi|289155830|gb|EFD04500.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L] Length = 645 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/30 (66%), Positives = 21/30 (70%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ VA E GV F S SG Sbjct: 200 LLVGPPGTGKTLLAKAVAGEAGVPFFSISG 229 >gi|225442743|ref|XP_002284961.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297743333|emb|CBI36200.3| unnamed protein product [Vitis vinifera] Length = 521 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 273 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 332 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 333 IFIDEIDSL 341 >gi|218290815|ref|ZP_03494884.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicyclobacillus acidocaldarius LAA1] gi|258511811|ref|YP_003185245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218239173|gb|EED06374.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicyclobacillus acidocaldarius LAA1] gi|257478537|gb|ACV58856.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 423 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 112 NILLIGPTGSGKTLLAQTLARTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDI 171 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 172 EKAERGIIYIDEIDKIA 188 >gi|193215075|ref|YP_001996274.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC 35110] gi|193088552|gb|ACF13827.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC 35110] Length = 700 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E G F S SG V A + L +++ + Sbjct: 229 VLLVGPPGTGKTLLAKAVAGEAGAPFFSISGSDFVEMFVGVGAARVRDLFKQAKEKAPCI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|183985209|ref|YP_001853500.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium marinum M] gi|183178535|gb|ACC43645.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium marinum M] Length = 633 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ L + +EA + ++H LF GP G GKT+ A+++AR L Sbjct: 8 RPATFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCA 62 Query: 82 FRSTSGPV 89 T+ P Sbjct: 63 QGPTATPC 70 >gi|160935941|ref|ZP_02083315.1| hypothetical protein CLOBOL_00836 [Clostridium bolteae ATCC BAA-613] gi|158441183|gb|EDP18900.1| hypothetical protein CLOBOL_00836 [Clostridium bolteae ATCC BAA-613] Length = 604 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 196 LLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 226 >gi|149185471|ref|ZP_01863787.1| Cell division cycle protein [Erythrobacter sp. SD-21] gi|148830691|gb|EDL49126.1| Cell division cycle protein [Erythrobacter sp. SD-21] Length = 774 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG---DLAALLTNLEDRD-----V 108 VL GPPG GKT LAQ VA E F + +GP I +G AL E + Sbjct: 245 VLLHGPPGTGKTRLAQAVANESDAEFFTINGPEIMGSGYGESEKALREVFEQATKASPAI 304 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 305 IFIDEIDSIA 314 >gi|119963542|ref|YP_945966.1| cell division protein (ftsH) [Arthrobacter aurescens TC1] gi|119950401|gb|ABM09312.1| putative cell division protein (ftsH) [Arthrobacter aurescens TC1] Length = 689 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 178 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 235 >gi|116491694|ref|YP_811238.1| ATP-dependent protease ATP-binding subunit [Oenococcus oeni PSU-1] gi|116092419|gb|ABJ57573.1| ATP-dependent protease Clp, ATPase subunit [Oenococcus oeni PSU-1] Length = 421 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 26/126 (20%) Query: 25 RTLEEFT-GQVEACSNLKVFIEAAKARA-EALDH----------VLFVGPPGLGKTTLAQ 72 + L E+ GQ EA L V + R E+L H +L +GP G GKT LAQ Sbjct: 72 KHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSGKTYLAQ 131 Query: 73 VVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118 +A+ L V F + +AG + + N+ R +++IDEI +++ Sbjct: 132 SLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQRGIIYIDEIDKIA 191 Query: 119 IIVEEI 124 E + Sbjct: 192 KKSENV 197 >gi|150396096|ref|YP_001326563.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium medicae WSM419] gi|166215207|sp|A6U7U8|CLPX_SINMW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|150027611|gb|ABR59728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium medicae WSM419] Length = 425 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192 >gi|6942107|gb|AAF32319.1|AF218420_2 ClpX [Brucella abortus] Length = 423 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 13/79 (16%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 ----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERARSIVYIDEVDKIS 190 >gi|56478266|ref|YP_159855.1| ATP-dependent protease ATP-binding subunit ClpX [Aromatoleum aromaticum EbN1] gi|62286505|sp|Q5P160|CLPX_AZOSE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|56314309|emb|CAI08954.1| ATP-dependent Clp protease ATP-binding,subunit clpX [Aromatoleum aromaticum EbN1] Length = 422 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 25/112 (22%) Query: 32 GQVEACSNLKVFIEAAKARAEALD-----------HVLFVGPPGLGKTTLAQVVARELGV 80 GQ +A NL V + R L ++L +GP G GKT LAQ +AR L V Sbjct: 80 GQTQAKRNLSVAVYNHYKRLRHLSGRKEEVELSKSNILLIGPTGSGKTLLAQTLARLLNV 139 Query: 81 NFRSTSGPVIAKAGDLAALLTNL-------EDRDV-------LFIDEIHRLS 118 F + +AG + + N+ D DV ++IDEI ++S Sbjct: 140 PFVMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQHGIVYIDEIDKIS 191 >gi|85115272|ref|XP_964849.1| hypothetical protein NCU08641 [Neurospora crassa OR74A] gi|28926644|gb|EAA35613.1| predicted protein [Neurospora crassa OR74A] Length = 718 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 23/147 (15%) Query: 43 FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAKAGDLAALLT 101 F + K + + L VL GPPG+GKT A+ VA + + +SG + + +L A LT Sbjct: 481 FDDIVKGKGQGLVCVLH-GPPGVGKTLTAECVAEYVQRPLYMVSSGDLGCVSSELDAQLT 539 Query: 102 NLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT- 155 + D R VL IDE I +E+ A+ D + MV SV + + + Sbjct: 540 QIMDMTATWRAVLLIDEA---DIFLEQ---RALHDLHRNAMV-------SVFLRVLEYYT 586 Query: 156 --LIAATTRVGLLTNPLQDRFGIPIRL 180 L T RV + R IPIR Sbjct: 587 GILFLTTNRVTTFDEAFKSRIHIPIRY 613 >gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818] Length = 330 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP +L++ E ++ F++ + L H+LF GPPG GKT+ + A++L G Sbjct: 17 RPDSLDQLVSHKEIIDTIQRFVDEKR-----LPHLLFYGPPGTGKTSTIKACAKQLYGKA 71 Query: 82 FRS 84 ++S Sbjct: 72 YKS 74 >gi|321458492|gb|EFX69559.1| hypothetical protein DAPPUDRAFT_202764 [Daphnia pulex] Length = 697 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG GKT LA+ VA E GV + +GP Sbjct: 294 VLLVGPPGTGKTLLARAVAGEAGVPYFHAAGP 325 >gi|262368512|ref|ZP_06061841.1| methanol dehydrogenase regulatory protein [Acinetobacter johnsonii SH046] gi|262316190|gb|EEY97228.1| methanol dehydrogenase regulatory protein [Acinetobacter johnsonii SH046] Length = 318 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 24/135 (17%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL------DHVLFVGPPGLGKT 68 +++ +S+ P+ ++EF QV ++ ++ + AL H+LF PGLGKT Sbjct: 18 DESQLSVFYPK-IQEFLNQVN-----QIILDKNQQTQLALCSLLAGGHILFEDLPGLGKT 71 Query: 69 TLAQVVARELGVNFRSTSGPVIAKAGDL--AALLTNLEDR----------DVLFIDEIHR 116 TLA +A G+ F+ A D+ + E R +L DEI+R Sbjct: 72 TLASSLAHLAGLQFKRIQFTNDMLASDVIGVNMFNQKEHRFEFKQGPIFTQILLADEINR 131 Query: 117 LSIIVEEILYPAMED 131 S + L AME+ Sbjct: 132 CSPKTQSALLEAMEE 146 >gi|242049964|ref|XP_002462726.1| hypothetical protein SORBIDRAFT_02g030960 [Sorghum bicolor] gi|241926103|gb|EER99247.1| hypothetical protein SORBIDRAFT_02g030960 [Sorghum bicolor] Length = 885 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 26/187 (13%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALL 100 ++ K + +A VL FVGPPG+GKT+LA +A+ L F R + G V +A Sbjct: 390 YLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAKALNRKFIRISLGGVKDEADIRGHRR 449 Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA---------------- 144 T + ID + R+S+ +L ++ D+ G+ SA Sbjct: 450 TYIGSMPGRLIDGLKRVSVSNPVMLLDEIDKTGSDVR-GDPASALLEVLDPEQNKAFNDH 508 Query: 145 -RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKL 198 +V +LS+ +A R+ + PL DR + I L Y E+ +K ++ R + Sbjct: 509 YLNVPFDLSKVIFVATANRMQPIPPPLLDRMEV-IELPGYTPEEKLKIAMKHLIPRVLEQ 567 Query: 199 TGLAVTD 205 GL++T+ Sbjct: 568 HGLSMTN 574 >gi|239916685|ref|YP_002956243.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC 2665] gi|281414857|ref|ZP_06246599.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC 2665] gi|239837892|gb|ACS29689.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC 2665] Length = 696 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 202 VLLYGPPGTGKTLLAKAVAGEAGVPFYSISG 232 >gi|170049163|ref|XP_001854132.1| katanin p60 ATPase-containing subunit [Culex quinquefasciatus] gi|167871046|gb|EDS34429.1| katanin p60 ATPase-containing subunit [Culex quinquefasciatus] Length = 553 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 311 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 370 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 371 IFIDEIDSL 379 >gi|168009415|ref|XP_001757401.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691524|gb|EDQ77886.1| predicted protein [Physcomitrella patens subsp. patens] Length = 373 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLEDR---DV 108 +L GPPG GKT LA+ VA E G NF + S IA +A + L + V Sbjct: 107 LLLFGPPGTGKTMLAKAVATEAGANFINISMSTIASKWFGEAEKYVKAVFTLASKISPSV 166 Query: 109 LFIDEIHRL 117 +FIDE+ + Sbjct: 167 IFIDEVDSM 175 >gi|145499016|ref|XP_001435494.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124402627|emb|CAK68097.1| unnamed protein product [Paramecium tetraurelia] Length = 443 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 21/186 (11%) Query: 43 FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAK-AGDLAALL 100 F E A+ + +L GPPG GKT LA+ A E G F +S +I+K G+ L+ Sbjct: 168 FFEGARTPWKG---ILMYGPPGTGKTYLAKACATEAEGTFFSVSSADLISKYVGESEKLI 224 Query: 101 TNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV---GEGPSARSVKINL 151 L + ++FIDEI + E A + +V G G + V + Sbjct: 225 KTLFTMAREQKPSIIFIDEIDSMCGARGEGQNDASRRVITEFLVQMQGVGHDDKGVLV-- 282 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 + AT L ++ RF I + +++ + ++Q K T +T E ++ Sbjct: 283 -----LGATNLPWALDTAIRRRFEKRIYIPLPDVQAREYMIQNSLKQTKTTLTKEQFEDL 337 Query: 212 AMRSRG 217 A+++ G Sbjct: 338 AVKTEG 343 >gi|121707797|ref|XP_001271944.1| AAA family ATPase Pontin, putative [Aspergillus clavatus NRRL 1] gi|119400092|gb|EAW10518.1| AAA family ATPase Pontin, putative [Aspergillus clavatus NRRL 1] Length = 458 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Query: 22 LRP-----RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 LRP +T + F GQ A V ++ KA+ A VL G PG GKT LA V++ Sbjct: 27 LRPDGTAEQTADGFVGQASAREACGVVVDLIKAKKMAGRAVLLAGGPGTGKTALALAVSQ 86 Query: 77 ELGVN 81 ELG Sbjct: 87 ELGTK 91 >gi|116251455|ref|YP_767293.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium leguminosarum bv. viciae 3841] gi|241204074|ref|YP_002975170.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium leguminosarum bv. trifolii WSM1325] gi|166214809|sp|Q1MIM6|CLPX_RHIL3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|115256103|emb|CAK07184.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX [Rhizobium leguminosarum bv. viciae 3841] gi|240857964|gb|ACS55631.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 425 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 172 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192 >gi|86357225|ref|YP_469117.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli CFN 42] gi|190891273|ref|YP_001977815.1| ATP-dependent Clp protease, ATP-binding subunit [Rhizobium etli CIAT 652] gi|123512322|sp|Q2K9U6|CLPX_RHIEC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238692521|sp|B3PVY5|CLPX_RHIE6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|86281327|gb|ABC90390.1| ATP-dependent Clp protease, ATP-binding subunit protein [Rhizobium etli CFN 42] gi|190696552|gb|ACE90637.1| ATP-dependent Clp protease protein, ATP-binding subunit [Rhizobium etli CIAT 652] gi|327188466|gb|EGE55680.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli CNPAF512] Length = 425 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192 >gi|73984472|ref|XP_533718.2| PREDICTED: similar to RuvB-like protein 1 isoform 1 [Canis familiaris] Length = 471 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|68160836|gb|AAY86864.1| lr1227 [Lactobacillus reuteri] Length = 551 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 44/89 (49%), Gaps = 11/89 (12%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 VE N K F K A VL GPPG GKT LA+ VA E GV F S SG + Sbjct: 211 VEFLKNPKKF---TKLGARIPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM 267 Query: 93 -AGDLAALLTNLEDR------DVLFIDEI 114 G A+ + +L D+ ++FIDEI Sbjct: 268 FVGVGASRVRDLFDQAKKAAPAIIFIDEI 296 >gi|331082572|ref|ZP_08331697.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 6_1_63FAA] gi|330400550|gb|EGG80180.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 6_1_63FAA] Length = 436 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 28/130 (21%) Query: 17 ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGP 62 +I+LL+P+ ++E GQ EA L V + R + ++L +GP Sbjct: 60 GEINLLKPQEIKEILDEYVIGQDEAKKVLSVAVYNHYKRVLSGGNTDVELQKSNILMLGP 119 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------V 108 G GKT LAQ +AR L V F + +AG + + N+ D D + Sbjct: 120 TGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYGI 179 Query: 109 LFIDEIHRLS 118 ++IDEI +++ Sbjct: 180 IYIDEIDKIT 189 >gi|322517186|ref|ZP_08070069.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus vestibularis ATCC 49124] gi|322124245|gb|EFX95761.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus vestibularis ATCC 49124] Length = 408 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 112 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 171 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 172 ERAERGIIYVDEIDKIA 188 >gi|319408365|emb|CBI82018.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella schoenbuchensis R1] Length = 424 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 175 ERAQRGIVYIDEVDKIS 191 >gi|319654928|ref|ZP_08009002.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2] gi|317393353|gb|EFV74117.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2] Length = 663 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ A E GV F S SG V A + L N + + Sbjct: 198 VLLVGPPGTGKTLLARAAAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 109 LFIDEI 114 +FIDEI Sbjct: 258 IFIDEI 263 >gi|312869843|ref|ZP_07729984.1| ATP-dependent metallopeptidase HflB [Lactobacillus oris PB013-T2-3] gi|311094622|gb|EFQ52925.1| ATP-dependent metallopeptidase HflB [Lactobacillus oris PB013-T2-3] Length = 709 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 229 VLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|307197462|gb|EFN78696.1| Paraplegin [Harpegnathos saltator] Length = 708 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 32/219 (14%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKAGDLAA-----LLTNLEDR--DVL 109 L +GPPG GKT LA+ VA E V F S +G I G L A L + R ++ Sbjct: 278 LLLGPPGCGKTLLAKAVATEASVPFLSMNGSEFIEVFGGLGAARVRDLFKEAKKRAPSII 337 Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVK---------INLSRFTLIAAT 160 +IDEI + D L ++ E S R++ I+ ++A+T Sbjct: 338 YIDEIDAIG--------KKRSDNSLGIINSE--SERTLNQLLVEMDGMISKEDVIILAST 387 Query: 161 TRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218 R +L L RF I ++F +E+ + I + L +++ +E + + T Sbjct: 388 NRADVLDKALLRPGRFDRHILIDFPTLEERQQIFE--THLKKISLKNEPSKYSGYLAYLT 445 Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 P +G + V + A + HA ++ D+ L AID+ Sbjct: 446 PGFSGADIANVCNEAAL-HAARDKKKQVDSNDLMYAIDR 483 >gi|282163543|ref|YP_003355928.1| putative AAA ATPase [Methanocella paludicola SANAE] gi|282155857|dbj|BAI60945.1| putative AAA ATPase [Methanocella paludicola SANAE] Length = 322 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 36/178 (20%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRS------------TSGPVIAKAG-----DLAA 98 +++ G PG+ KTT+A+V A G+NF+ T GPV + Sbjct: 50 NIMLEGVPGVAKTTIAKVFAASTGLNFKRIQFVPDIMPSDITGGPVFNQKTMEFNVYKGP 109 Query: 99 LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR-FTLI 157 + TNL L DEI+R S ++ L AME+ Q+ S V L F +I Sbjct: 110 IFTNL-----LLADEINRASPKIQSSLLEAMEEKQV--------SINGVAYPLPEPFMVI 156 Query: 158 AATTRVGLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210 A + ++ T PL DRF + +++ + +D +++ +G+ + D E Sbjct: 157 ATENPIDIIGTFPLPEAQIDRFMFKLDIDYPDNDDELALLKSKNAGSGVNIEDALNSE 214 >gi|259501964|ref|ZP_05744866.1| cell division protein FtsH [Lactobacillus antri DSM 16041] gi|259170141|gb|EEW54636.1| cell division protein FtsH [Lactobacillus antri DSM 16041] Length = 706 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 229 VLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|240171031|ref|ZP_04749690.1| DNA polymerase III subunits gamma and tau [Mycobacterium kansasii ATCC 12478] Length = 598 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ L + +EA + ++H LF GP G GKT+ A+++AR L Sbjct: 8 RPATFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCA 62 Query: 82 FRSTSGPV 89 T+ P Sbjct: 63 QGPTATPC 70 >gi|222085565|ref|YP_002544095.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84] gi|221723013|gb|ACM26169.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84] Length = 470 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 158 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 217 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 218 YNVERAQRGIVYIDEVDKIS 237 >gi|220911094|ref|YP_002486403.1| ATP-dependent metalloprotease FtsH [Arthrobacter chlorophenolicus A6] gi|219857972|gb|ACL38314.1| ATP-dependent metalloprotease FtsH [Arthrobacter chlorophenolicus A6] Length = 687 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 177 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 234 >gi|213692574|ref|YP_002323160.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524035|gb|ACJ52782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458726|dbj|BAJ69347.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 459 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G+GKT LAQ +AR + V F T + +AG D+ +L L D Sbjct: 146 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 205 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 206 GDVSRAQHGIIYIDEIDKIA 225 >gi|254458150|ref|ZP_05071576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacterales bacterium GD 1] gi|207084986|gb|EDZ62272.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacterales bacterium GD 1] Length = 414 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A +VL +GP G GKT +AQ +AR L V + +AG D+ +LT L D Sbjct: 110 AKSNVLLIGPTGSGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLIQAAD 169 Query: 106 RDV-------LFIDEIHRLS 118 DV +FIDE+ ++S Sbjct: 170 GDVERAQQGIVFIDEVDKVS 189 >gi|254432500|ref|ZP_05046203.1| cell division protein FtsH [Cyanobium sp. PCC 7001] gi|197626953|gb|EDY39512.1| cell division protein FtsH [Cyanobium sp. PCC 7001] Length = 644 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ +A E GV F S SG + G A+ + +L R + Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENSPCL 276 Query: 109 LFIDEI 114 +FIDEI Sbjct: 277 IFIDEI 282 >gi|220909725|ref|YP_002485036.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC 7425] gi|219866336|gb|ACL46675.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece sp. PCC 7425] Length = 447 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 137 NILLIGPTGCGKTLLAQTLARMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVSDLDV 196 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 197 EQAQRGIIYIDEIDKIA 213 >gi|194757108|ref|XP_001960807.1| GF11321 [Drosophila ananassae] gi|190622105|gb|EDV37629.1| GF11321 [Drosophila ananassae] Length = 740 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 34/71 (47%), Gaps = 9/71 (12%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G EA LK +E K E + VL VGPPG GKT LA+ VA E Sbjct: 302 TFEDVKGCDEAKQELKEVVEFLK-NPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 Query: 78 LGVNFRSTSGP 88 V F +GP Sbjct: 361 AKVPFFHAAGP 371 >gi|167999145|ref|XP_001752278.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696673|gb|EDQ83011.1| predicted protein [Physcomitrella patens subsp. patens] Length = 334 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLEDR---DV 108 +L GPPG GKT LA+ VA E G NF + S IA +A + L + V Sbjct: 66 LLLFGPPGTGKTMLAKAVATEAGANFINISMSTIASKWFGEAEKYVKAVFTLASKISPSV 125 Query: 109 LFIDEIHRL 117 +FIDE+ + Sbjct: 126 IFIDEVDSM 134 >gi|170744864|ref|YP_001773519.1| ATPase central domain-containing protein [Methylobacterium sp. 4-46] gi|168199138|gb|ACA21085.1| AAA ATPase central domain protein [Methylobacterium sp. 4-46] Length = 354 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 28/118 (23%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD----------HVLFVGPPGLGKTTLAQVVA 75 +L+ G E + L+ IE K A D H++F GPPG+GKT +A++ Sbjct: 92 SLDRLIGLAEVKAELRTLIERLKVEAARRDAGMRVSPLSLHMVFTGPPGVGKTVVARLYG 151 Query: 76 ---RELGVNFRSTSGPVIA--KAGDLAALL--TNLEDRD--------VLFIDEIHRLS 118 RELGV SG ++ ++G +A + T L+ R VLFIDE + L+ Sbjct: 152 AALRELGV---LESGHIVETDRSGLVAGYVGQTALKTRQRIAEALDGVLFIDEAYALA 206 >gi|148239552|ref|YP_001224939.1| cell division protein FtsH [Synechococcus sp. WH 7803] gi|147848091|emb|CAK23642.1| Cell division protein FtsH [Synechococcus sp. WH 7803] Length = 637 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|148269390|ref|YP_001243850.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila RKU-1] gi|147734934|gb|ABQ46274.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila RKU-1] Length = 478 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 93/237 (39%), Gaps = 43/237 (18%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T E Q ++K I A + +F GP G GKTTLA+++A+ L Sbjct: 9 RPKTFSEVVNQ----DHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCEN 64 Query: 83 RSTSGPV----IAKAGDLAALLTNLE-----DRDVLFIDEIHRLS--------------I 119 R P + D + +E +R IDEI R+ Sbjct: 65 RKGVEPCNSCRACREIDEGTFMDVIELDAASNRG---IDEIRRIRDAVGYRPMEGKYKVY 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 I++E+ E F L E P + V + ATT + + + R + Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVV--------FVLATTNLEKVPPTIISRCQV--- 170 Query: 180 LNFYEIED--LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 F I D ++ +Q A+ G+ + EA IA R+ G R A +L +V F+E Sbjct: 171 FEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE 227 >gi|118619468|ref|YP_907800.1| DNA polymerase III subunits gamma and tau [Mycobacterium ulcerans Agy99] gi|118571578|gb|ABL06329.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium ulcerans Agy99] Length = 621 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ L + +EA + ++H LF GP G GKT+ A+++AR L Sbjct: 8 RPATFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCA 62 Query: 82 FRSTSGPV 89 T+ P Sbjct: 63 QGPTATPC 70 >gi|109075578|ref|XP_001104047.1| PREDICTED: spermatogenesis-associated protein 5-like isoform 2 [Macaca mulatta] Length = 789 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 389 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 448 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 449 IFIDELDALC 458 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 15/32 (46%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG KT +A+ +A E G+NF + GP Sbjct: 663 ILLYGPPGCSKTMIAKALANESGLNFLAIKGP 694 >gi|91793846|ref|YP_563497.1| ATP-dependent protease ATP-binding subunit [Shewanella denitrificans OS217] gi|123060778|sp|Q12LA2|CLPX_SHEDO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|91715848|gb|ABE55774.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella denitrificans OS217] Length = 426 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|57524964|ref|NP_001006138.1| ruvB-like 1 [Gallus gallus] gi|53136380|emb|CAG32519.1| hypothetical protein RCJMB04_28a17 [Gallus gallus] Length = 456 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 EAC V +E K++ A VL GPPG GKT LA +A+ELG Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 >gi|50307971|ref|XP_453984.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643119|emb|CAG99071.1| KLLA0E00837p [Kluyveromyces lactis] Length = 814 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 551 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 582 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT++A +A EL V F S S P + Sbjct: 236 VLLHGPPGCGKTSIANALAGELQVPFISISAPSV 269 >gi|325292626|ref|YP_004278490.1| ATP-dependent clp protease ATP-binding subunit ClpX [Agrobacterium sp. H13-3] gi|325060479|gb|ADY64170.1| ATP-dependent clp protease ATP-binding subunit ClpX [Agrobacterium sp. H13-3] Length = 425 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192 >gi|315640558|ref|ZP_07895666.1| cell division protein FtsH [Enterococcus italicus DSM 15952] gi|315483762|gb|EFU74250.1| cell division protein FtsH [Enterococcus italicus DSM 15952] Length = 699 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D + Sbjct: 239 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDTAKKNAPAI 298 Query: 109 LFIDEI 114 +FIDEI Sbjct: 299 IFIDEI 304 >gi|292655481|ref|YP_003535378.1| cell division control protein 48 [Haloferax volcanii DS2] gi|291370782|gb|ADE03009.1| cell division control protein 48 [Haloferax volcanii DS2] Length = 736 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ +A E GVNF +GP Sbjct: 514 LLLHGPPGTGKTMLARAIAAESGVNFIHVAGP 545 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ +F + SGP + Sbjct: 241 VLLHGPPGTGKTLIAKAVANEVDASFTTISGPEV 274 >gi|238882613|gb|EEQ46251.1| ribosome biogenesis ATPase RIX7 [Candida albicans WO-1] Length = 827 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 559 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 590 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKTT+A +A EL V F + S P + Sbjct: 230 VLLYGPPGCGKTTIANALAGELKVPFINISAPSV 263 >gi|225874967|ref|YP_002756426.1| endopeptidase LA [Acidobacterium capsulatum ATCC 51196] gi|225793844|gb|ACO33934.1| endopeptidase LA [Acidobacterium capsulatum ATCC 51196] Length = 815 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 41/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L +A+ G F R + G V +A G + + Sbjct: 362 LCFVGPPGVGKTSLGMSIAKATGRKFVRLSLGGVRDEAEIRGHRRTYIGALPGQIIQSMK 421 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148 R+ V+ +DEI +++ E+L P +D LD V+ Sbjct: 422 KAGTRNPVMMLDEIDKMASDFRGDPASALLEVLDPEQNSTFQDHYLD-----------VE 470 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDLKTIVQ 193 +LS+ +A + + PLQDR I +RL+ Y E+E L+ Q Sbjct: 471 YDLSQVLFVATANVLHTIPAPLQDRMEI-LRLHGYTEVEKLEIAKQ 515 >gi|221635848|ref|YP_002523724.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159] gi|310943102|sp|B9L3S8|FTSH2_THERP RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|221157798|gb|ACM06916.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159] Length = 699 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E GV F S S + G A+ + +L +R + Sbjct: 287 VLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEMFVGVGASRVRDLFERAKAQAPSI 346 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 347 IFIDEL 352 >gi|166364178|ref|YP_001656451.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166086551|dbj|BAG01259.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 631 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 213 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 243 >gi|168033123|ref|XP_001769066.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679700|gb|EDQ66144.1| predicted protein [Physcomitrella patens subsp. patens] Length = 966 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ +A E GV F +G + G AA + +L R V Sbjct: 458 VLLEGPPGCGKTLLAKAIAGEAGVPFYQMAGSEFVEVLVGVGAARIRDLFKRAKVNRPSV 517 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 518 VFIDEIDAL 526 >gi|156044192|ref|XP_001588652.1| hypothetical protein SS1G_10199 [Sclerotinia sclerotiorum 1980] gi|154694588|gb|EDN94326.1| hypothetical protein SS1G_10199 [Sclerotinia sclerotiorum 1980 UF-70] Length = 781 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 543 VLLWGPPGCGKTLLAKAVANESKANFISIKGP 574 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VL GPPG GKT +A A E+GV+F S P V +G+ + ++ D + Sbjct: 227 VLLHGPPGCGKTMIANAFAAEIGVSFIPISAPSLVAGMSGESEKKIRDVFDEAKRMAPCL 286 Query: 109 LFIDEI 114 +FIDEI Sbjct: 287 VFIDEI 292 >gi|72383093|ref|YP_292448.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus marinus str. NATL2A] gi|124026831|ref|YP_001015946.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus str. NATL1A] gi|123759843|sp|Q46ID3|CLPX_PROMT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214801|sp|A2C5C2|CLPX_PROM1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|72002943|gb|AAZ58745.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Prochlorococcus marinus str. NATL2A] gi|123961899|gb|ABM76682.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus str. NATL1A] Length = 451 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 31/141 (21%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL----------T 101 ++L +GP G GKT LAQ +A L V F + +AG D+ +L Sbjct: 136 NILLIGPTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDV 195 Query: 102 NLEDRDVLFIDEIHRLS------IIVEEILYPAMEDFQLDLMVG-----------EGPSA 144 +L R +++IDEI +++ I ++ ++ L ++ G + P Sbjct: 196 DLAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYG 255 Query: 145 RSVKINLSRFTLIAATTRVGL 165 S++I+ S+ I VGL Sbjct: 256 DSIQIDTSQILFICGGAFVGL 276 >gi|15888589|ref|NP_354270.1| ATP-dependent protease ATP-binding subunit [Agrobacterium tumefaciens str. C58] gi|23813866|sp|Q8UFY5|CLPX_AGRT5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|15156307|gb|AAK87055.1| ATP-dependent Clp protease, ATP-binding subunit [Agrobacterium tumefaciens str. C58] Length = 425 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192 >gi|172056096|ref|YP_001812556.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum 255-15] gi|171988617|gb|ACB59539.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum 255-15] Length = 668 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ A E GV F S SG V A + L N + + Sbjct: 200 VLLVGPPGTGKTLLARAAAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 259 Query: 109 LFIDEI 114 +FIDEI Sbjct: 260 IFIDEI 265 >gi|68470308|ref|XP_720658.1| hypothetical protein CaO19.11695 [Candida albicans SC5314] gi|68470569|ref|XP_720530.1| hypothetical protein CaO19.4219 [Candida albicans SC5314] gi|40362746|gb|AAR84642.1| AAA ATPase [Candida albicans] gi|46442402|gb|EAL01691.1| hypothetical protein CaO19.4219 [Candida albicans SC5314] gi|46442537|gb|EAL01825.1| hypothetical protein CaO19.11695 [Candida albicans SC5314] Length = 827 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 559 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 590 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKTT+A +A EL V F + S P + Sbjct: 230 VLLYGPPGCGKTTIANALAGELKVPFINISAPSV 263 >gi|329908484|ref|ZP_08274874.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oxalobacteraceae bacterium IMCC9480] gi|327546711|gb|EGF31662.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oxalobacteraceae bacterium IMCC9480] Length = 422 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQACN 171 Query: 104 -----EDRDVLFIDEIHRLS 118 + +++IDEI ++S Sbjct: 172 YDVEKAQKGIVYIDEIDKIS 191 >gi|323348569|gb|EGA82813.1| Msp1p [Saccharomyces cerevisiae Lalvin QA23] Length = 362 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA--------KAGDLAALLTNL 103 +A VL GPPG GKT LA+ +A+E G NF S I K D L N Sbjct: 124 QAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANK 183 Query: 104 EDRDVLFIDEI 114 ++FIDEI Sbjct: 184 LQPCIIFIDEI 194 >gi|318041527|ref|ZP_07973483.1| cell division protein FtsH [Synechococcus sp. CB0101] Length = 654 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247 >gi|307596637|ref|YP_003902954.1| Microtubule-severing ATPase [Vulcanisaeta distributa DSM 14429] gi|307551838|gb|ADN51903.1| Microtubule-severing ATPase [Vulcanisaeta distributa DSM 14429] Length = 882 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--LAALLTNLED--RD 107 E + +L GPPG+GKT +A+ A L NF +G +A+ G AA++ ++ + RD Sbjct: 649 EPIHGILLFGPPGVGKTLVAKATANMLKANFIELNGAELARVGPERAAAVVKDVFNMARD 708 Query: 108 ----VLFIDEIHRLS 118 ++FIDEI ++ Sbjct: 709 NAPAIIFIDEIDSVA 723 >gi|296453942|ref|YP_003661085.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bifidobacterium longum subsp. longum JDM301] gi|296183373|gb|ADH00255.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium longum subsp. longum JDM301] Length = 459 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G+GKT LAQ +AR + V F T + +AG D+ +L L D Sbjct: 146 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 205 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 206 GDVSRAQHGIIYIDEIDKIA 225 >gi|295694781|ref|YP_003588019.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912] gi|295410383|gb|ADG04875.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912] Length = 648 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 197 ILLVGPPGTGKTLLARAVAGEAGVPFFSISG 227 >gi|258544637|ref|ZP_05704871.1| chaperone protein ClpB [Cardiobacterium hominis ATCC 15826] gi|258520118|gb|EEV88977.1| chaperone protein ClpB [Cardiobacterium hominis ATCC 15826] Length = 412 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIE---AAKARAEALDHVLFVGPPGLGKTTLAQVV 74 D ++ R + GQ + C +L + A R + + LF GPPG GKT LA+V+ Sbjct: 101 DAEAVKARLQSQVVGQDQVCHDLAWQLRRRLALTQRNKPVGVFLFAGPPGTGKTWLAKVL 160 Query: 75 ARELG 79 A+ LG Sbjct: 161 AQVLG 165 >gi|225691100|gb|ACO06234.1| NBS-LRR disease resistance protein-like protein [Hordeum vulgare] Length = 1250 Score = 40.4 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 18 DISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 DI+ RP+T +E F G+ + + FI + + L V VGP G+GKTTL Q Sbjct: 223 DITKNRPKTTQEIVEPEFYGRDDQKKEIVDFITHGEYCKDELTVVPLVGPGGIGKTTLTQ 282 Query: 73 VVARELGVNFR 83 + REL +F+ Sbjct: 283 HIYRELEGSFQ 293 >gi|225023958|ref|ZP_03713150.1| hypothetical protein EIKCOROL_00825 [Eikenella corrodens ATCC 23834] gi|224942983|gb|EEG24192.1| hypothetical protein EIKCOROL_00825 [Eikenella corrodens ATCC 23834] Length = 418 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103 A ++L +GP G GKT LAQ +AR L V F + +AG D+ ++T L Sbjct: 105 AKSNILLIGPTGSGKTLLAQSLARRLDVPFVMADATTLTEAGYVGEDVEQIITKLLGNCD 164 Query: 104 -----EDRDVLFIDEIHRLS 118 +++IDEI ++S Sbjct: 165 FNVEKAQNGIVYIDEIDKIS 184 >gi|195614112|gb|ACG28886.1| FtsH6 - Zea mays FtsH protease Length = 691 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 264 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 294 >gi|126323252|ref|XP_001376069.1| PREDICTED: similar to protease, serine, 15, [Monodelphis domestica] Length = 973 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S E+ D++ + E+ G + + FI ++ R +L F GPPG+GKT++A Sbjct: 491 SNENLDLARAKEVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 550 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G V A G + L + + ++ IDE+ Sbjct: 551 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 610 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ S + E+L P LD + V ++LS+ I + Sbjct: 611 KIGRGYQGDPSSALLELLDPEQNSNFLDHYL-------DVPVDLSKVLFICTANVTETIP 663 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 664 EPLRDRMEM-INVSGYVAQEKLAIAER 689 >gi|94264385|ref|ZP_01288176.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium MLMS-1] gi|93455214|gb|EAT05430.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium MLMS-1] Length = 802 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 17/30 (56%), Positives = 21/30 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 + FVGPPG+GKT+L Q +AR LG F S Sbjct: 367 LCFVGPPGVGKTSLGQSIARALGRKFHRIS 396 >gi|32478843|gb|AAP83638.1| katanin [Gossypium barbadense] Length = 521 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 273 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 332 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 333 IFIDEIDSL 341 >gi|86607507|ref|YP_476269.1| FtsH family metalloprotease [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556049|gb|ABD01006.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 640 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 207 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 237 >gi|50725794|dbj|BAD33324.1| putative Lon protease [Oryza sativa Japonica Group] gi|52075953|dbj|BAD46033.1| putative Lon protease [Oryza sativa Japonica Group] Length = 880 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 22/182 (12%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALL 100 ++ K + +A VL FVGPPG+GKT+LA +A+ L F R + G V +A Sbjct: 389 YLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAKALNRKFIRISLGGVKDEADIRGHRR 448 Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA-------------RSV 147 T + ID + R+S+ +L ++ D+ G+ SA +V Sbjct: 449 TYIGSMPGRLIDGLKRVSVSNPVMLLDEIDKTGSDVR-GDPASALLEVLDPEQNKTYLNV 507 Query: 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLA 202 +LS+ +A R+ + PL DR + I L Y E+ +K ++ R + GL+ Sbjct: 508 PFDLSKVIFVATANRMQPIPPPLLDRMEV-IELPGYTPEEKLKIAMKHLIPRVLEQHGLS 566 Query: 203 VT 204 T Sbjct: 567 ST 568 >gi|6321465|ref|NP_011542.1| Msp1p [Saccharomyces cerevisiae S288c] gi|462627|sp|P28737|MSP1_YEAST RecName: Full=Protein MSP1; AltName: Full=Tat-binding homolog 4 gi|404217|emb|CAA48191.1| MSP1 protein [Saccharomyces cerevisiae] gi|531756|emb|CAA56956.1| YTA4 (=MSP1) [Saccharomyces cerevisiae] gi|1323004|emb|CAA97015.1| MSP1 [Saccharomyces cerevisiae] gi|45269435|gb|AAS56098.1| YGR028W [Saccharomyces cerevisiae] gi|151943311|gb|EDN61624.1| 40 kDa membrane-spanning ATPase [Saccharomyces cerevisiae YJM789] gi|190406946|gb|EDV10213.1| 40 kDa membrane-spanning ATPase [Saccharomyces cerevisiae RM11-1a] gi|207345217|gb|EDZ72108.1| YGR028Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256273852|gb|EEU08773.1| Msp1p [Saccharomyces cerevisiae JAY291] gi|259146531|emb|CAY79788.1| Msp1p [Saccharomyces cerevisiae EC1118] gi|285812224|tpg|DAA08124.1| TPA: Msp1p [Saccharomyces cerevisiae S288c] gi|323309131|gb|EGA62359.1| Msp1p [Saccharomyces cerevisiae FostersO] gi|323354997|gb|EGA86828.1| Msp1p [Saccharomyces cerevisiae VL3] Length = 362 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA--------KAGDLAALLTNL 103 +A VL GPPG GKT LA+ +A+E G NF S I K D L N Sbjct: 124 QAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANK 183 Query: 104 EDRDVLFIDEI 114 ++FIDEI Sbjct: 184 LQPCIIFIDEI 194 >gi|28555882|emb|CAD45024.1| NBS-LRR disease resistance protein homologue [Hordeum vulgare] Length = 1280 Score = 40.4 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 18 DISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 DI+ RP+T +E F G+ + + FI + + L V VGP G+GKTTL Q Sbjct: 253 DITKNRPKTTQEIVEPEFYGRDDQKKEIVDFITHGEYCKDELTVVPLVGPGGIGKTTLTQ 312 Query: 73 VVARELGVNFR 83 + REL +F+ Sbjct: 313 HIYRELEGSFQ 323 >gi|85108152|ref|XP_962516.1| hypothetical protein NCU08303 [Neurospora crassa OR74A] gi|74617090|sp|Q7SA85|LONP2_NEUCR RecName: Full=Lon protease homolog 2, peroxisomal gi|28924124|gb|EAA33280.1| hypothetical protein NCU08303 [Neurospora crassa OR74A] Length = 937 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 48/222 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101 +L VGPPG+GKT+LA+ VA LG F S V A G + L Sbjct: 487 LLLVGPPGVGKTSLARSVATALGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGLIVQGLK 546 Query: 102 NLEDRDVLF-IDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 + + +F +DEI ++ S + E+L P D V +V I+L Sbjct: 547 KVGVANPVFLLDEIDKVGGSSIHGDPSAAMLEVLDPEQNHNFTDHYV-------NVPIDL 599 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED----LKTIVQRGAKLTGLAVTDEA 207 S+ IA + + PL DR + +E ++ +V + ++ GL DE+ Sbjct: 600 SKVLFIATANSLDTIPAPLLDRMETIYIPGYTTLEKRHIAMRHLVPKQLRVNGL---DES 656 Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 TP + R+ + + A + + REI+ A Sbjct: 657 QVSF------TPEVVSRI---IESYTREAGVRNLEREISSVA 689 >gi|313123479|ref|YP_004033738.1| ATP-dependent clp protease ATP-binding subunit clpx [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280042|gb|ADQ60761.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 417 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++ +GP G GKT LAQ++AR L V F + +AG L LL N + Sbjct: 111 NIALIGPTGSGKTYLAQILARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 170 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 171 ERAQRGIIYIDEIDKIS 187 >gi|301787789|ref|XP_002929310.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda melanoleuca] Length = 403 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED ++S E G E L+ IE E V L Sbjct: 132 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 185 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIREMFNYARDHQPCIIF 245 Query: 111 IDEI 114 +DEI Sbjct: 246 MDEI 249 >gi|297839905|ref|XP_002887834.1| katanin [Arabidopsis lyrata subsp. lyrata] gi|297333675|gb|EFH64093.1| katanin [Arabidopsis lyrata subsp. lyrata] Length = 522 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 333 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 334 IFIDEIDSL 342 >gi|239629120|ref|ZP_04672151.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519266|gb|EEQ59132.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 604 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 196 LLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 226 >gi|241955559|ref|XP_002420500.1| ATPase of the AAA family, putative; ribosome biogenesis ATPase, putative; ribosome export protein, putative [Candida dubliniensis CD36] gi|223643842|emb|CAX41579.1| ATPase of the AAA family, putative [Candida dubliniensis CD36] Length = 830 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 562 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 593 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKTT+A +A EL V F + S P + Sbjct: 233 VLLYGPPGCGKTTIANALAGELKVPFINISAPSV 266 >gi|213402523|ref|XP_002172034.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus yFS275] gi|212000081|gb|EEB05741.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus yFS275] Length = 389 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA LGVNF + S ++ K G+ A ++ + + V Sbjct: 170 VLLYGPPGTGKTLLARAVASTLGVNFLKVVSSAIVDKYIGESARIIREMFSYAKEHEPCV 229 Query: 109 LFIDEI 114 +F+DE+ Sbjct: 230 IFMDEV 235 >gi|294658879|ref|XP_461219.2| DEHA2F20086p [Debaryomyces hansenii CBS767] gi|202953457|emb|CAG89607.2| DEHA2F20086p [Debaryomyces hansenii] Length = 366 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108 VLF GPPG GKT LA+ +A+E G F S I K D L N + Sbjct: 137 VLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSTIMDKWYGESNKIVDAIFSLANKLQPCI 196 Query: 109 LFIDEI 114 +FIDEI Sbjct: 197 VFIDEI 202 >gi|186510248|ref|NP_188608.3| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] Length = 1001 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E G NF S +G + GD L L + Sbjct: 750 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVI 809 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 810 IFVDEVDSL 818 >gi|166031091|ref|ZP_02233920.1| hypothetical protein DORFOR_00776 [Dorea formicigenerans ATCC 27755] gi|166028938|gb|EDR47695.1| hypothetical protein DORFOR_00776 [Dorea formicigenerans ATCC 27755] Length = 607 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 205 ILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDLFQQAKEKAPCI 264 Query: 109 LFIDEI 114 +FIDEI Sbjct: 265 VFIDEI 270 >gi|190360157|sp|P0C7N7|RFC2_PHANO RecName: Full=Replication factor C subunit 2; Short=Replication factor C2 Length = 411 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+TL E T Q L ++++ L H+LF GPPG GKT+ +A++L Sbjct: 36 VEKYRPKTLSEVTAQDNTIQILSRTLQSSN-----LPHMLFYGPPGTGKTSTILALAKQL 90 >gi|86739914|ref|YP_480314.1| ATP-dependent protease ATP-binding subunit ClpX [Frankia sp. CcI3] gi|123751353|sp|Q2JDQ7|CLPX_FRASC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|86566776|gb|ABD10585.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Frankia sp. CcI3] Length = 428 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 34/132 (25%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------------DHVLFV 60 L +PR + EF GQ A L V + R +A ++L + Sbjct: 61 LPKPREIYEFLDSYVVGQETAKKTLSVAVYNHYKRVQAGGSSGDGSKGEVELAKSNILLL 120 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV----- 108 GP G GKT LAQ +AR L V F + +AG D+ +L L D DV Sbjct: 121 GPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAET 180 Query: 109 --LFIDEIHRLS 118 ++IDE+ +++ Sbjct: 181 GIIYIDEVDKIA 192 >gi|86157972|ref|YP_464757.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter dehalogenans 2CP-C] gi|85774483|gb|ABC81320.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaeromyxobacter dehalogenans 2CP-C] Length = 427 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L VGP G GKT LAQ +AR L V F + +AG D+ ++ NL Sbjct: 123 NILLVGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNADYDV 182 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 183 EKASRGIVYIDEIDKIA 199 >gi|21165879|gb|AAM43608.1|AF479656_1 spermatogenesis associated factor protein [Homo sapiens] Length = 790 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 450 IFIDELDAL 458 >gi|148543505|ref|YP_001270875.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri DSM 20016] gi|194467680|ref|ZP_03073667.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri 100-23] gi|227363654|ref|ZP_03847768.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri MM2-3] gi|325681849|ref|ZP_08161368.1| cell division protein FtsH [Lactobacillus reuteri MM4-1A] gi|148530539|gb|ABQ82538.1| membrane protease FtsH catalytic subunit [Lactobacillus reuteri DSM 20016] gi|194454716|gb|EDX43613.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri 100-23] gi|227071323|gb|EEI09632.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri MM2-3] gi|324978940|gb|EGC15888.1| cell division protein FtsH [Lactobacillus reuteri MM4-1A] Length = 702 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 231 VLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 290 Query: 109 LFIDEI 114 +FIDEI Sbjct: 291 IFIDEI 296 >gi|117927947|ref|YP_872498.1| ATP-dependent protease ATP-binding subunit ClpX [Acidothermus cellulolyticus 11B] gi|166214751|sp|A0LSV2|CLPX_ACIC1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|117648410|gb|ABK52512.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidothermus cellulolyticus 11B] Length = 427 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L D Sbjct: 112 AKSNILLIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 171 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 172 YDVKRAETGIIYIDEIDKIA 191 >gi|332642761|gb|AEE76282.1| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] Length = 993 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E G NF S +G + GD L L + Sbjct: 742 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVI 801 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 802 IFVDEVDSL 810 >gi|319946999|ref|ZP_08021233.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus australis ATCC 700641] gi|319747047|gb|EFV99306.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus australis ATCC 700641] Length = 410 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L VGP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMVGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|300913622|ref|ZP_07130939.1| PTS system transcriptional activator [Thermoanaerobacter sp. X561] gi|300890307|gb|EFK85452.1| PTS system transcriptional activator [Thermoanaerobacter sp. X561] Length = 977 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 44/192 (22%) Query: 5 EGLLSRNVSQEDADISLLRPRT---LEEFTGQVEACSNLKVFIEAAKARA----EALDHV 57 + L+ R+ + D ++ P+T L F + + +LKV I AKA L H Sbjct: 103 DNLVQRSTIKNDT-VNFETPKTAKSLLSFKEIIGSEGSLKVQISLAKAAVLYPPHGL-HT 160 Query: 58 LFVGPPGLGKTTLAQVV---ARELGVNFRSTSGPVIAKAGDLA----------------- 97 L VGP G GK+ LA+ + A E G F + V+ D A Sbjct: 161 LIVGPSGSGKSQLAEAMYNYAIESG-RFNENAPFVVFNCADYADNPQLLMAQLFGYVKGA 219 Query: 98 --------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149 A L D +LF+DE+HRL +EIL+ ++ + + GE S R +I Sbjct: 220 FTGADTAKAGLVEKADGGILFLDEVHRLPSEGQEILFYLLDKGKFRRL-GETESTREAQI 278 Query: 150 NLSRFTLIAATT 161 LIAATT Sbjct: 279 -----MLIAATT 285 >gi|224096592|ref|XP_002310664.1| predicted protein [Populus trichocarpa] gi|222853567|gb|EEE91114.1| predicted protein [Populus trichocarpa] Length = 655 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E G NF S +G + GD L L + Sbjct: 391 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVI 450 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 451 IFVDEVDSL 459 >gi|206602655|gb|EDZ39136.1| ClpX, ATPase regulatory subunit [Leptospirillum sp. Group II '5-way CG'] Length = 426 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 114 NILMIGPTGTGKTLLAQTLARILEVPFAIADATTLTEAGYVGEDVENIILKLLQAADYDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 174 EKAERGIVYIDEIDKIS 190 >gi|212274447|ref|NP_001130462.1| hypothetical protein LOC100191560 [Zea mays] gi|194689194|gb|ACF78681.1| unknown [Zea mays] Length = 691 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 264 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 294 >gi|118489540|gb|ABK96572.1| unknown [Populus trichocarpa x Populus deltoides] Length = 525 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 277 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 336 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 337 IFIDEIDSL 345 >gi|159463438|ref|XP_001689949.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] gi|158283937|gb|EDP09687.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] Length = 752 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 10/66 (15%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDV 108 L VGPPG GKT LA+ A E GV F S SG A+ DL A ++ + Sbjct: 323 LLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEMFVGVGPARVRDLFA-QARTQNPSI 381 Query: 109 LFIDEI 114 +FIDEI Sbjct: 382 IFIDEI 387 >gi|154305492|ref|XP_001553148.1| hypothetical protein BC1G_08515 [Botryotinia fuckeliana B05.10] gi|150853302|gb|EDN28494.1| hypothetical protein BC1G_08515 [Botryotinia fuckeliana B05.10] Length = 778 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 540 VLLWGPPGCGKTLLAKAVANESKANFISIKGP 571 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VL GPPG GKT +A A E+GV+F S P V +G+ + ++ D + Sbjct: 224 VLLHGPPGCGKTMIANAFAAEIGVSFIPISAPSLVAGMSGESEKKIRDVFDEAKRMAPCL 283 Query: 109 LFIDEI 114 +FIDEI Sbjct: 284 VFIDEI 289 >gi|86140704|ref|ZP_01059263.1| ATP-dependent protease ATP-binding subunit [Leeuwenhoekiella blandensis MED217] gi|85832646|gb|EAQ51095.1| ATP-dependent protease ATP-binding subunit [Leeuwenhoekiella blandensis MED217] Length = 410 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 29/132 (21%) Query: 16 DADISLLRPRTLEEF----------TGQVEACSNLKVFIEAAKARAE-----ALDHVLFV 60 D D++L +P+ +++F T +V A + + + E +++ V Sbjct: 54 DGDLTLKKPKEIKDFLDEYIIGQDYTKKVMAVAVYNHYKRLLQPETEDDIEIQKSNIVMV 113 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NLE--DR 106 G G GKT +A+ +AR L V V+ +AG D+ ++LT NLE R Sbjct: 114 GQTGTGKTLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAQR 173 Query: 107 DVLFIDEIHRLS 118 ++FIDEI +++ Sbjct: 174 GIVFIDEIDKIA 185 >gi|328951760|ref|YP_004369094.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452084|gb|AEB07913.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109] Length = 595 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 26/127 (20%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNF-------RSTSGPVIAKAGDLAALLTNLEDRD 107 ++++ +GP G+GKT L +++A++LGV F S +G V DL L D D Sbjct: 116 NNIILIGPTGVGKTYLVKLIAKKLGVPFVKGDATKFSETGYVGGDVEDLVRDLVYEADDD 175 Query: 108 -------VLFIDEIHRLSII------------VEEILYPAMEDFQLDLMVGEGPSARSVK 148 +++IDEI +++ V+ L ME+ ++DL P ++ Sbjct: 176 LELAQFGIIYIDEIDKIAASGNLIGPDVSRSGVQRALLKPMEETEVDLKTPHDPISQIQA 235 Query: 149 INLSRFT 155 I R T Sbjct: 236 IEHYRRT 242 >gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum] gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum] Length = 344 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 +S RP+T+++ + Q + S LK + L H+LF GPPG GKT+ +A ++ Sbjct: 14 VSKYRPKTMDDVSYQDDVVSALKKSLSTGN-----LPHLLFYGPPGTGKTSTILAIAMDI 68 >gi|303240903|ref|ZP_07327414.1| AAA ATPase [Acetivibrio cellulolyticus CD2] gi|302591489|gb|EFL61226.1| AAA ATPase [Acetivibrio cellulolyticus CD2] Length = 1677 Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 ++ + R + + +L + PPG GKTTL + +A LG+ +GP I Sbjct: 1262 QIGVAGEDKRTDLMGMLLLISPPGYGKTTLMEYIASRLGITMVKINGPAIG 1312 >gi|297802292|ref|XP_002869030.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] gi|297314866|gb|EFH45289.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] Length = 620 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 31/156 (19%) Query: 38 SNLKVFIEA-AKARAEALDH------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 ++LK IE A+A A H ++F GPPG GKT +A+ +AR+ G+++ +G + Sbjct: 347 TSLKKRIEHLARATANTKSHQAPFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 406 Query: 91 AKAGDLAAL----LTNLEDRD----VLFIDE-----IHRLSIIVEEILYPAMEDFQLDLM 137 A G A + + + +LFIDE R S + E A+ L+ Sbjct: 407 APLGSQAVTKIHQIFDWAKKSNKGLLLFIDEADAFLCRRNSTYMSEAQRSALN----ALL 462 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173 G +R + L+ AT R G L + + DR Sbjct: 463 FRTGDQSRDI-------VLVLATNRPGDLDSAVTDR 491 >gi|257439813|ref|ZP_05615568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Faecalibacterium prausnitzii A2-165] gi|257197722|gb|EEU96006.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Faecalibacterium prausnitzii A2-165] Length = 439 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108 +VL +GP G+GKT LAQ +A+ LGV F + +AG + + N+ D DV Sbjct: 129 NVLLLGPSGVGKTLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLLQAADFDV 188 Query: 109 -------LFIDEIHRLS 118 ++IDEI +++ Sbjct: 189 QKAQVGIIYIDEIDKIT 205 >gi|225420297|ref|ZP_03762600.1| hypothetical protein CLOSTASPAR_06640 [Clostridium asparagiforme DSM 15981] gi|225041114|gb|EEG51360.1| hypothetical protein CLOSTASPAR_06640 [Clostridium asparagiforme DSM 15981] Length = 595 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 184 LLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 214 >gi|255582646|ref|XP_002532103.1| Protein MSP1, putative [Ricinus communis] gi|223528225|gb|EEF30282.1| Protein MSP1, putative [Ricinus communis] Length = 323 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E G NF S +G + GD L L + Sbjct: 73 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVI 132 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 133 IFVDEVDSL 141 >gi|224070873|ref|XP_002303274.1| predicted protein [Populus trichocarpa] gi|222840706|gb|EEE78253.1| predicted protein [Populus trichocarpa] Length = 498 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 279 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 338 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 339 IFIDEIDSL 347 >gi|222097842|ref|YP_002531899.1| ATPase, AAA family [Bacillus cereus Q1] gi|221241900|gb|ACM14610.1| ATPase, AAA family [Bacillus cereus Q1] Length = 146 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61 ++R+ L V + +RP ++E GQ K+ +A ++ G Sbjct: 37 IERDYTLRETVKMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQA--NHFQSMILYG 94 Query: 62 PPGLGKTTLAQVVARELGVNFR 83 PPG GKT++A +A G FR Sbjct: 95 PPGTGKTSIASAIAGSTGTPFR 116 >gi|219128993|ref|XP_002184684.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403793|gb|EEC43743.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 590 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 9 SRNVSQEDADISLLRPRTLEEFTGQV-EACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 ++ +++ED ++ +E ++ E LK K A+ L GPPG GK Sbjct: 101 AKKINKEDVTVNFASVAGCDEAKKEIMEFVDFLKDSDRFTKLGAKIPKGALLCGPPGTGK 160 Query: 68 TTLAQVVARELGVNFRSTSG 87 T LA+ VA E GV F S SG Sbjct: 161 TLLAKAVAGEAGVPFYSISG 180 >gi|219850937|ref|YP_002465369.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris E1-9c] gi|219545196|gb|ACL15646.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris E1-9c] Length = 810 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL--EDRD----V 108 VL GPPG GKT +A+ VA E G +F + +GP VI+K G+ L + E R+ + Sbjct: 226 VLLYGPPGTGKTLIAKAVASESGAHFIAIAGPEVISKYYGESEQRLREVFEEARENAPAI 285 Query: 109 LFIDEIHRLS 118 +FIDE+ ++ Sbjct: 286 IFIDELDSIA 295 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 19/32 (59%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ A E G NF GP Sbjct: 499 VLLYGPPGTGKTLIAKAAAHESGANFIPVRGP 530 >gi|158301622|ref|XP_321284.4| AGAP001783-PA [Anopheles gambiae str. PEST] gi|157012561|gb|EAA01173.4| AGAP001783-PA [Anopheles gambiae str. PEST] Length = 587 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 345 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 404 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 405 IFIDEIDSL 413 >gi|126659472|ref|ZP_01730605.1| cell division protein; FtsH [Cyanothece sp. CCY0110] gi|126619206|gb|EAZ89942.1| cell division protein; FtsH [Cyanothece sp. CCY0110] Length = 667 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ VA E GV F S S + G AA + +L ++ + Sbjct: 244 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFEQAKKQAPCI 303 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 304 IFIDEL 309 >gi|114653055|ref|XP_509951.2| PREDICTED: similar to Psmc6 protein isoform 3 [Pan troglodytes] Length = 353 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED ++S E G E L+ IE E V L Sbjct: 132 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 185 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 245 Query: 111 IDEI 114 +DEI Sbjct: 246 MDEI 249 >gi|78223741|ref|YP_385488.1| peptidase S16, ATP-dependent protease La [Geobacter metallireducens GS-15] gi|78194996|gb|ABB32763.1| Peptidase S16, ATP-dependent protease La [Geobacter metallireducens GS-15] Length = 774 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 49/219 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L + +AR LG F R + G + +A G + L R Sbjct: 352 LCFVGPPGVGKTSLGKSIARALGRKFIRMSLGGMRDEAEIRGHRRTYIGALPGRIIQELY 411 Query: 107 ------DVLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V +DE+ ++ + + E+L P + D + V +LS Sbjct: 412 RCGTNNPVFMLDEVDKIGLDFRGDPASALLEVLDPEQNNTFTDHYL-------DVPFDLS 464 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEA 207 I ++ + L+DR + IRL+ Y E+ ++ +V R + GLA A Sbjct: 465 NVMFITTANQLDPVPAALKDRMEV-IRLSGYTDEEKEKIAVRYLVPREVEENGLAKNPPA 523 Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 + A L + +RD+ A + + R IA Sbjct: 524 FADEA------------LFKIIRDYTREAGVRNLQRNIA 550 >gi|16081968|ref|NP_394378.1| regulatory protein moxR related protein [Thermoplasma acidophilum DSM 1728] gi|10640197|emb|CAC12049.1| regulatory protein moxR related protein [Thermoplasma acidophilum] Length = 319 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 12/94 (12%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLEDR------- 106 +H+L G PGL KT LA AR + FR P + + ++ N+E R Sbjct: 43 NHILMEGVPGLAKTMLANEFARHTRMKFRRIQFTPDMLPSDVTGTIMFNIESRKMEFKEG 102 Query: 107 ----DVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 +V+ DEI+R V+ L AME+ Q+ + Sbjct: 103 PIFANVILADEINRTPPKVQSALLEAMEETQVTI 136 >gi|317506432|ref|ZP_07964235.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] gi|316255263|gb|EFV14530.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] Length = 322 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP L++ GQ L V +EA + L H LF GP G GKT+LA+++AR + Sbjct: 8 RPERLDQVLGQDHVTRPLSVALEAGR-----LGHAYLFSGPRGCGKTSLARILARSVNCE 62 Query: 82 FRSTSGPV 89 T+ P Sbjct: 63 RGPTANPC 70 >gi|308272581|emb|CBX29185.1| ATP-dependent protease La 2 [uncultured Desulfobacterium sp.] Length = 789 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 ++++ DI R E+ G +A + F+ K + E+ +L F GPPG GKT+L Sbjct: 320 TKDNLDIKKARKVLDEDHYGLEKAKKRIIEFLAVRKLKPESKGPILCFAGPPGTGKTSLG 379 Query: 72 QVVARELGVNF 82 + +AR LG F Sbjct: 380 KSIARALGRKF 390 >gi|307352634|ref|YP_003893685.1| AAA ATPase central domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307155867|gb|ADN35247.1| AAA ATPase central domain protein [Methanoplanus petrolearius DSM 11571] Length = 601 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 95/220 (43%), Gaps = 54/220 (24%) Query: 56 HVLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGPVIAKAGDLAALL---TNLEDRD-- 107 H++F G PG GKTT+A++V+ +LGV S V DL A T L+ ++ Sbjct: 379 HMVFSGNPGTGKTTVARLVSEIYHKLGV--LSKGHLVEVDRADLVAGYVGQTALKVQEVV 436 Query: 108 ------VLFIDEIHRLS------IIVEEI--LYPAMEDFQLDLMVGEGPSARSVKINLSR 153 VLFIDE + L+ E I L AMED + DL+V Sbjct: 437 QSALGGVLFIDEAYTLTSKEGNDFGDEAIATLLKAMEDNRNDLLV--------------- 481 Query: 154 FTLIAATTRV---GLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE--- 206 ++A + L +NP L+ RF I Y E+L ++ + G+A++DE Sbjct: 482 --IVAGYPDLMNEFLQSNPGLRSRFNKFINFEDYSPEELMEMLDMRCRKNGMALSDESRV 539 Query: 207 ---AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 A E +++G G R VR+F E A+ R Sbjct: 540 YARAFFEKRCKTKGADFANG---RDVRNFFERAYLNMSDR 576 >gi|296272249|ref|YP_003654880.1| ATP-dependent metalloprotease FtsH [Arcobacter nitrofigilis DSM 7299] gi|296096424|gb|ADG92374.1| ATP-dependent metalloprotease FtsH [Arcobacter nitrofigilis DSM 7299] Length = 688 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E V F S SG Sbjct: 229 VLLVGPPGTGKTLLAKAVAGEADVEFLSVSG 259 >gi|258593181|emb|CBE69514.1| Cell division protein FtsH; ATP-dependent zinc-metallo protease [NC10 bacterium 'Dutch sediment'] Length = 642 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 LLLVGPPGCGKTLLAKAVAGEAGVPFFSLSG 228 >gi|227544679|ref|ZP_03974728.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri CF48-3A] gi|300909079|ref|ZP_07126542.1| cell division protein FtsH [Lactobacillus reuteri SD2112] gi|227185325|gb|EEI65396.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri CF48-3A] gi|300894486|gb|EFK87844.1| cell division protein FtsH [Lactobacillus reuteri SD2112] Length = 702 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D+ + Sbjct: 231 VLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 290 Query: 109 LFIDEI 114 +FIDEI Sbjct: 291 IFIDEI 296 >gi|163816595|ref|ZP_02207959.1| hypothetical protein COPEUT_02786 [Coprococcus eutactus ATCC 27759] gi|158448295|gb|EDP25290.1| hypothetical protein COPEUT_02786 [Coprococcus eutactus ATCC 27759] Length = 629 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 227 ILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDLFQQAKEKAPCI 286 Query: 109 LFIDEI 114 +FIDEI Sbjct: 287 VFIDEI 292 >gi|84495018|ref|ZP_00994137.1| putative cell division protein FtsH [Janibacter sp. HTCC2649] gi|84384511|gb|EAQ00391.1| putative cell division protein FtsH [Janibacter sp. HTCC2649] Length = 707 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 207 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 237 >gi|332638690|ref|ZP_08417553.1| FtsH-2 peptidase [Weissella cibaria KACC 11862] Length = 687 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L D + Sbjct: 229 VLLEGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDNAKKAAPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|284164772|ref|YP_003403051.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM 5511] gi|284014427|gb|ADB60378.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM 5511] Length = 405 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED--RD----V 108 VL GPPG GKT LA+ VA E F +G + G+ A L+ +L D R+ V Sbjct: 186 VLLYGPPGTGKTMLAKAVANETNATFIKMAGSELVHKFIGEGAKLVRDLFDVAREHEPAV 245 Query: 109 LFIDEI 114 +FIDEI Sbjct: 246 IFIDEI 251 >gi|284162502|ref|YP_003401125.1| ATPase AAA [Archaeoglobus profundus DSM 5631] gi|284012499|gb|ADB58452.1| AAA ATPase central domain protein [Archaeoglobus profundus DSM 5631] Length = 412 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 16/70 (22%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGV------------NFRSTSGPVIAKAGDLAALLTNL 103 +LF+GPPG GKTT A+ ++R+LG+ + + I K +LA +L+ Sbjct: 203 KLLFIGPPGTGKTTTARALSRKLGLPLVEVKLSMITSQYLGETSKNIEKVFELAKILSPC 262 Query: 104 EDRDVLFIDE 113 +LFIDE Sbjct: 263 ----ILFIDE 268 >gi|281203381|gb|EFA77581.1| AAA ATPase domain-containing protein [Polysphondylium pallidum PN500] Length = 336 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 32/158 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEI 114 +L GPPG GKT LA+ +A+E G F + + +I G+ LLT + Sbjct: 116 ILLYGPPGTGKTMLAKAIAKESGYFFLNINDSLIESKFYGETGKLLTAI----------- 164 Query: 115 HRLSIIVEEILYPAMEDF-QLDLMVGE--------GPSARSVKINL------SRFTLIAA 159 + E L P + F ++D +VG S +SV + L S+ +I A Sbjct: 165 ----FTLAEKLQPVIVFFDEIDGIVGTRSATTTDYNISKKSVLLQLWDGIKDSKIIIIGA 220 Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 T R+ + R IR+N ++ + I+++ K Sbjct: 221 TNRINAIDEAFLRRMPKRIRINLPDVTSRENILRKMLK 258 >gi|242770327|ref|XP_002341956.1| DNA replication factor C subunit Rfc3, putative [Talaromyces stipitatus ATCC 10500] gi|218725152|gb|EED24569.1| DNA replication factor C subunit Rfc3, putative [Talaromyces stipitatus ATCC 10500] Length = 399 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP +L+E G + + + FI++ + L H+L GPPG GKTT +AR + Sbjct: 52 RPNSLDEVQGHQDILATINRFIDSHR-----LPHLLLYGPPGTGKTTTILALARRI 102 >gi|188589992|ref|YP_001919612.1| putative Cell division protease FtsH homolog [Clostridium botulinum E3 str. Alaska E43] gi|251780453|ref|ZP_04823373.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500273|gb|ACD53409.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E3 str. Alaska E43] gi|243084768|gb|EES50658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 601 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ ++ E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAISGEAGVPFFSISG 225 >gi|167772096|ref|ZP_02444149.1| hypothetical protein ANACOL_03470 [Anaerotruncus colihominis DSM 17241] gi|167665894|gb|EDS10024.1| hypothetical protein ANACOL_03470 [Anaerotruncus colihominis DSM 17241] Length = 653 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ VA E GV F S SG Sbjct: 211 VLLMGPPGTGKTLLAKAVAGEAGVPFFSISG 241 >gi|163841941|ref|YP_001626346.1| cell division protein [Renibacterium salmoninarum ATCC 33209] gi|162955417|gb|ABY24932.1| cell division protein [Renibacterium salmoninarum ATCC 33209] Length = 704 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 202 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 232 >gi|308800020|ref|XP_003074791.1| replication factor C 110 kDa subunit (ISS) [Ostreococcus tauri] gi|116061331|emb|CAL52049.1| replication factor C 110 kDa subunit (ISS) [Ostreococcus tauri] Length = 553 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 18/119 (15%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAR 76 PRT+ + G A + L+ ++ AR + +L GPPG+GKTT A ++ + Sbjct: 72 PRTVTDLVGNSSAINVLRSWLLQWSARKFNVQLKGQDRKCILISGPPGVGKTTTAVLLCK 131 Query: 77 ELGV--------NFRSTSGPVI-AKAGDLAALLTNLEDRDVLFID--EIHRLSIIVEEI 124 ELG+ + R SG V+ AG LA+ + + D + R ++I++E+ Sbjct: 132 ELGLQTLNINASDSRGKSGKVVDGIAGTLASAVREFVTNKCIGSDSEQTVRSALIMDEV 190 >gi|52078564|ref|YP_077355.1| cell-division protein and general stress protein [Bacillus licheniformis ATCC 14580] gi|52783926|ref|YP_089755.1| hypothetical protein BLi00085 [Bacillus licheniformis ATCC 14580] gi|319648593|ref|ZP_08002807.1| cell division protease ftsH [Bacillus sp. BT1B_CT2] gi|52001775|gb|AAU21717.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus licheniformis ATCC 14580] gi|52346428|gb|AAU39062.1| FtsH [Bacillus licheniformis ATCC 14580] gi|317389360|gb|EFV70173.1| cell division protease ftsH [Bacillus sp. BT1B_CT2] Length = 639 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ A E GV F S SG V A + L N + + Sbjct: 197 VLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCL 256 Query: 109 LFIDEI 114 +FIDEI Sbjct: 257 IFIDEI 262 >gi|125624160|ref|YP_001032643.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis subsp. cremoris MG1363] gi|38257645|sp|Q8GJP6|CLPX_LACLM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|7546983|gb|AAF63738.1|AF236863_2 protease ClpX [Lactococcus lactis subsp. cremoris MG1363] gi|24935310|gb|AAN64303.1| ClpX protein [Lactococcus lactis subsp. cremoris MG1363] gi|124492968|emb|CAL97931.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactococcus lactis subsp. cremoris MG1363] gi|300070936|gb|ADJ60336.1| ATP-dependent protease ATP-binding subunit ClpX [Lactococcus lactis subsp. cremoris NZ9000] Length = 411 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 111 NILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNI 170 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 171 ERAERGIIYIDEIDKIA 187 >gi|71028288|ref|XP_763787.1| 26S proteasome regulatory subunit [Theileria parva strain Muguga] gi|68350741|gb|EAN31504.1| 26S proteasome regulatory subunit, putative [Theileria parva] Length = 415 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNL----EDRD--V 108 VL GPPG GKT LA+ +A +LG NF + + V+ K G+ A ++ + +D + Sbjct: 196 VLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIREMFGYAKDNQPCI 255 Query: 109 LFIDEI 114 +FIDEI Sbjct: 256 IFIDEI 261 >gi|322786219|gb|EFZ12823.1| hypothetical protein SINV_00013 [Solenopsis invicta] Length = 431 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 14/101 (13%) Query: 57 VLFVGPPGLGKTTLAQVVA---RELG------VNFRSTSGPV--IAKAGDLAALLTNLED 105 ++F GPPG GKT+L ++A ++L VN + + V I A A L D Sbjct: 77 MIFWGPPGCGKTSLTNIIATLSKKLTSNNVHIVNLSAANSGVKNIRDAVTEAKNKLKLSD 136 Query: 106 -RDVLFIDEIHRLSIIVEEILYPAME--DFQLDLMVGEGPS 143 + ++F+DEIH + + ++I P +E F L E PS Sbjct: 137 CKTIVFMDEIHCFNKLQQDIFLPHVEAGTFTLIGCTTENPS 177 >gi|323138990|ref|ZP_08074050.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] gi|322395744|gb|EFX98285.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] Length = 639 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 192 VLLVGPPGTGKTLLARAIAGEAGVPFFSISG 222 >gi|319956958|ref|YP_004168221.1| sigma 54 interacting domain protein [Nitratifractor salsuginis DSM 16511] gi|319419362|gb|ADV46472.1| Sigma 54 interacting domain protein [Nitratifractor salsuginis DSM 16511] Length = 405 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 29/128 (22%) Query: 20 SLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR----------AEALDHVLFVGPPG 64 LL P+ L+ F GQ EA L V + R + ++L +GP G Sbjct: 55 KLLTPKELKHFLDEYVIGQEEAKKTLSVAVYNHYKRLFKHIEDDDTEISKSNILLIGPTG 114 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLF 110 GKT LAQ +AR L V + +AG D+ +LT L ++ ++F Sbjct: 115 SGKTLLAQSIARFLDVPIAIADATNLTEAGYVGEDVENILTKLLMAADGDVDKAEKGIVF 174 Query: 111 IDEIHRLS 118 IDEI +++ Sbjct: 175 IDEIDKIA 182 >gi|311743363|ref|ZP_07717170.1| ATP-dependent metalloprotease FtsH [Aeromicrobium marinum DSM 15272] gi|311313431|gb|EFQ83341.1| ATP-dependent metalloprotease FtsH [Aeromicrobium marinum DSM 15272] Length = 687 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +E +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 197 IEELGEIKEFLAEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 254 >gi|296232625|ref|XP_002761658.1| PREDICTED: lon protease homolog, mitochondrial isoform 1 [Callithrix jacchus] Length = 960 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S E+ D++ + E+ G + + FI ++ R +L F GPPG+GKT++A Sbjct: 474 SDENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 533 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G V A G + L + + ++ IDE+ Sbjct: 534 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 593 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ S + E+L P LD + V ++LS+ I + Sbjct: 594 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 646 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 647 EPLRDRMEV-ISVSGYVAQEKLAIAER 672 >gi|289164075|ref|YP_003454213.1| protease, ATP-dependent zinc-metallo [Legionella longbeachae NSW150] gi|288857248|emb|CBJ11073.1| protease, ATP-dependent zinc-metallo [Legionella longbeachae NSW150] Length = 553 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S +G Sbjct: 146 VLLVGPPGTGKTLLARAVAGEAGVPFFSING 176 >gi|270157541|ref|ZP_06186198.1| cell division protease FtsH-like protein [Legionella longbeachae D-4968] gi|269989566|gb|EEZ95820.1| cell division protease FtsH-like protein [Legionella longbeachae D-4968] Length = 601 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S +G Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSING 224 >gi|281411913|ref|YP_003345992.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila RKU-10] gi|281373016|gb|ADA66578.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila RKU-10] Length = 478 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 93/237 (39%), Gaps = 43/237 (18%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T E Q ++K I A + +F GP G GKTTLA+++A+ L Sbjct: 9 RPKTFSEVVNQ----DHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCEN 64 Query: 83 RSTSGPV----IAKAGDLAALLTNLE-----DRDVLFIDEIHRLS--------------I 119 R P + D + +E +R IDEI R+ Sbjct: 65 RKGVEPCNSCRACREIDEGTFMDVIELDAASNRG---IDEIRRIRDAVGYRPMEGKYKVY 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 I++E+ E F L E P + V + ATT + + + R + Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVV--------FVLATTNLEKVPPTIISRCQV--- 170 Query: 180 LNFYEIED--LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 F I D ++ +Q A+ G+ + EA IA R+ G R A +L +V F+E Sbjct: 171 FEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE 227 >gi|255552989|ref|XP_002517537.1| Katanin p60 ATPase-containing subunit, putative [Ricinus communis] gi|223543169|gb|EEF44701.1| Katanin p60 ATPase-containing subunit, putative [Ricinus communis] Length = 523 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 275 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 334 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 335 IFIDEIDSL 343 >gi|210622564|ref|ZP_03293246.1| hypothetical protein CLOHIR_01194 [Clostridium hiranonis DSM 13275] gi|210154147|gb|EEA85153.1| hypothetical protein CLOHIR_01194 [Clostridium hiranonis DSM 13275] Length = 438 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP +E+ GQ KV ++ + +++F GPPG GKTTLA ++A G Sbjct: 16 FRPSKIEDMVGQSHIIGENKVMNRIIQSGN--IPNMIFYGPPGTGKTTLANIIANATGKK 73 Query: 82 F 82 + Sbjct: 74 Y 74 >gi|147797355|emb|CAN76004.1| hypothetical protein VITISV_021762 [Vitis vinifera] Length = 512 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 273 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 332 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 333 IFIDEIDSL 341 >gi|73984095|ref|XP_540960.2| PREDICTED: similar to spermatogenesis associated factor SPAF [Canis familiaris] Length = 893 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSI 449 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 450 IFIDELDALC 459 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695 >gi|15643449|ref|NP_228495.1| DNA polymerase III, gamma and tau subunit [Thermotoga maritima MSB8] gi|4981209|gb|AAD35768.1|AE001741_1 DNA polymerase III, gamma and tau subunit [Thermotoga maritima MSB8] Length = 478 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 93/237 (39%), Gaps = 43/237 (18%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T E Q ++K I A + +F GP G GKTTLA+++A+ L Sbjct: 9 RPKTFSEVVNQ----DHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCEN 64 Query: 83 RSTSGPV----IAKAGDLAALLTNLE-----DRDVLFIDEIHRLS--------------I 119 R P + D + +E +R IDEI R+ Sbjct: 65 RKGVEPCNSCRACREIDEGTFMDVIELDAASNRG---IDEIRRIRDAVGYRPMEGKYKVY 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 I++E+ E F L E P + V + ATT + + + R + Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVV--------FVLATTNLEKVPPTIISRCQV--- 170 Query: 180 LNFYEIED--LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 F I D ++ +Q A+ G+ + EA IA R+ G R A +L +V F+E Sbjct: 171 FEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE 227 >gi|71407388|ref|XP_806166.1| AAA ATPase [Trypanosoma cruzi strain CL Brener] gi|70869829|gb|EAN84315.1| AAA ATPase, putative [Trypanosoma cruzi] Length = 783 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL GPPG KT LA+ +A E +NF S GP V +K GD + ++ R V Sbjct: 553 VLLYGPPGCSKTMLAKALANESKMNFISVKGPEVFSKWVGDSEKAVRDIFTRARAVAPCV 612 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 613 IFIDEL 618 >gi|322823350|gb|EFZ29121.1| AAA ATPase, putative [Trypanosoma cruzi] Length = 782 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL GPPG KT LA+ +A E +NF S GP V +K GD + ++ R V Sbjct: 552 VLLYGPPGCSKTMLAKALANESKMNFISVKGPEVFSKWVGDSEKAVRDIFTRARAVAPCV 611 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 612 IFIDEL 617 >gi|323139555|ref|ZP_08074600.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] gi|322395174|gb|EFX97730.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] Length = 662 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLARAIAGEAGVPFFSISG 225 >gi|313159185|gb|EFR58558.1| DNA polymerase III, subunit gamma and tau [Alistipes sp. HGB5] Length = 749 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP T GQ S LK IE RA+ LF GP G+GKTT A++ A+ +N Sbjct: 12 RPATFASVVGQKHITSTLKNAIE----RAQLAHAYLFCGPRGVGKTTCARIFAK--AINC 65 Query: 83 RSTSG 87 S +G Sbjct: 66 LSPNG 70 >gi|297153990|gb|ADI03702.1| hypothetical protein SBI_00581 [Streptomyces bingchenggensis BCW-1] Length = 1101 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 108/275 (39%), Gaps = 69/275 (25%) Query: 1 MMDREGL-LSRNVSQEDADISLLRP---------------RTLEEFTGQVEA-------- 36 M+DR+ L + +AD+SLL P R+ EE ++A Sbjct: 788 MIDRQAFRLGSMANPAEADLSLLLPEDIADESAVAAGADGRSSEELLADLDAMIGLQAVK 847 Query: 37 --CSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTS 86 ++L + A K R A H++F GPPG GKTT+A++ A L + +T Sbjct: 848 HEVTDLVNLLSATKRRQAAGLPTPKISHHLVFSGPPGTGKTTVARLYAELLLSLGVLATG 907 Query: 87 GPV-IAKA-------GDLAALLTNLEDR---DVLFIDEIHRLSI---------IVEEILY 126 V +A+A G A L + +R VLFIDE + L+ + L Sbjct: 908 QLVEVARADLVGRYVGHTAQLTKEVFERALGGVLFIDEAYTLTPEGAGSDFGREAVDTLL 967 Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEI 185 MED + +++V ++RF L +NP L RF + Y Sbjct: 968 KLMEDHRDEVVV----IVAGYTEEMARF----------LASNPGLASRFSRSVDFEHYST 1013 Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 ++L I+ R A +G E + G PR Sbjct: 1014 DELVEIMSRHATASGYDCAPETVEALLQYVAGLPR 1048 >gi|255325836|ref|ZP_05366928.1| membrane protease FtsH catalytic subunit [Corynebacterium tuberculostearicum SK141] gi|255297048|gb|EET76373.1| membrane protease FtsH catalytic subunit [Corynebacterium tuberculostearicum SK141] Length = 785 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233 >gi|238059367|ref|ZP_04604076.1| ATP-dependent protease La [Micromonospora sp. ATCC 39149] gi|237881178|gb|EEP70006.1| ATP-dependent protease La [Micromonospora sp. ATCC 39149] Length = 777 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 79/189 (41%), Gaps = 44/189 (23%) Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR-------- 106 GPPG+GKT+L + VAR LG NF R + G V +A G + L R Sbjct: 345 LAGPPGVGKTSLGESVARALGRNFVRVSLGGVRDEAEIRGHRRTYVGALPGRIVRALREA 404 Query: 107 ----DVLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 V+ +DE+ +L++ + E+L PA D + V ++LS Sbjct: 405 GSMNPVVLLDEVDKLAVGYAGDPAAALLEVLDPAQNHTFRDHYL-------EVDLDLSDV 457 Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG---------AKLTGLAVT- 204 +A V + PL DR + + L+ Y ED K + R A LT VT Sbjct: 458 LFLATANVVETIPGPLLDRMEL-VTLDGY-TEDEKAAIARDHLLPRQLQRAGLTAEEVTV 515 Query: 205 -DEAACEIA 212 DEA IA Sbjct: 516 ADEALTSIA 524 >gi|227834066|ref|YP_002835773.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC 700975] gi|262183448|ref|ZP_06042869.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC 700975] gi|227455082|gb|ACP33835.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC 700975] Length = 818 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233 >gi|255079830|ref|XP_002503495.1| predicted protein [Micromonas sp. RCC299] gi|226518762|gb|ACO64753.1| predicted protein [Micromonas sp. RCC299] Length = 1184 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%) Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92 E S L+ + +A A VL GPPG GKT LA+ +A E GV F + +G + Sbjct: 539 ELISYLRDYQRYVRAGASIPMGVLLCGPPGTGKTLLARCLAGEAGVPFFACAGTEFMEMF 598 Query: 93 AGDLAALLTNLEDRD------VLFIDEIHRLSI 119 G AA + NL ++ ++FIDE +++ Sbjct: 599 VGVGAARIRNLFNQARKCRPCIIFIDEFDSVAV 631 >gi|213965130|ref|ZP_03393328.1| Cell division protease FtsH homolog [Corynebacterium amycolatum SK46] gi|213952244|gb|EEB63628.1| Cell division protease FtsH homolog [Corynebacterium amycolatum SK46] Length = 894 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 49/105 (46%), Gaps = 17/105 (16%) Query: 26 TLEEFTGQVEACSNL---KVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77 T E+ G EA L + F++ AR E L VL GPPG GKT LA+ VA E Sbjct: 166 TFEDVAGADEAVQELDEIRDFLQHP-ARYEELGAKIPRGVLLYGPPGTGKTLLARAVAGE 224 Query: 78 LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 GV F + SG V A + L ++ ++FIDEI Sbjct: 225 AGVPFYTISGSDFVEMFVGVGASRVRDLFNQAKENSPCIIFIDEI 269 >gi|182679710|ref|YP_001833856.1| ATPase central domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635593|gb|ACB96367.1| AAA ATPase central domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 855 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 97/232 (41%), Gaps = 49/232 (21%) Query: 56 HVLFVGPPGLGKTTLAQV---VARELGVNFRST------SGPVIAKAGDLAALLTNLEDR 106 H++F GPPG GKT +A++ + R+LGV + +G V G AL T + Sbjct: 143 HMVFTGPPGTGKTAVARLYGAILRDLGVLEKGHLVETDRAGLVAGYVGQ-TALKTKEKIA 201 Query: 107 D----VLFIDEIHRLSIIVEEILYPAMEDF---QLDLMVGEGPSARSVKINLSRFTLIAA 159 D +LFIDE + L+ E + A DF +D ++ E R R +I A Sbjct: 202 DALDGILFIDEAYALA---EPVGVGA--DFGQEAIDTLLKEMEDKR------DRLVVIVA 250 Query: 160 ----TTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM- 213 R L +NP L RF I Y +DL I A+ GL ++ +A + Sbjct: 251 GYPDQMRKFLTSNPGLPSRFTKTIPFESYATDDLVAITHSMARRDGLHMSPDADPILKTF 310 Query: 214 --RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFD 261 R+R P DFA A+T+ +A RLA I G D Sbjct: 311 FERARTAP-----------DFANARTARTVLERAREAQAARLAPLITSSGVD 351 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 101/243 (41%), Gaps = 58/243 (23%) Query: 56 HVLFVGPPGLGKTTLAQV---VARELGVNFRST------SGPVIAKAGDLAALLTNLEDR 106 H++F GPPG GKT +A++ + RELGV + +G V G AL T + Sbjct: 420 HMVFTGPPGTGKTAVARLYGAILRELGVLEKGHLIETDRAGLVAGYVGQ-TALKTKEKIA 478 Query: 107 D----VLFIDEIHRLSIIVE----------EILYPAMEDF--QLDLMVGEGPSARSVKIN 150 D +LFIDE + LS + E L MED +L ++V P Sbjct: 479 DALDGILFIDEAYGLSQQMGSEHDFGREAIETLLKEMEDKRDRLVVIVAGYPD------E 532 Query: 151 LSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209 +S+F L +NP L RF I + Y +L +I + A+ GL + +A Sbjct: 533 MSKF----------LDSNPGLPSRFTKTIAFDSYGASELVSITRGMARHDGLYLNPDA-- 580 Query: 210 EIAMRSRGTPRIAGRLLRRVR---DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266 I RVR DFA A+T+ +A R+A +G +DL Sbjct: 581 ---------DPILTTYFERVRTEPDFANARTARTVLERAREAQAGRIA-PLIGTPGIDLN 630 Query: 267 YLT 269 LT Sbjct: 631 ELT 633 >gi|86150829|ref|ZP_01069045.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|85841999|gb|EAQ59245.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni 260.94] Length = 538 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGS 219 >gi|332661274|gb|AEE86674.1| AAA-type ATPase family protein [Arabidopsis thaliana] Length = 632 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 31/156 (19%) Query: 38 SNLKVFIEA-AKARAEALDH------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 ++LK IE A+A A H ++F GPPG GKT +A+ +AR+ G+++ +G + Sbjct: 359 TSLKKRIERLARATANTKSHQAPFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 418 Query: 91 AKAGDLAAL----LTNLEDRD----VLFIDE-----IHRLSIIVEEILYPAMEDFQLDLM 137 A G A + + + +LFIDE R S + E A+ L+ Sbjct: 419 APLGSQAVTKIHQIFDWAKKSNKGLLLFIDEADAFLCERNSTYMSEAQRSALN----ALL 474 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173 G +R + L+ AT R G L + + DR Sbjct: 475 FRTGDQSRDI-------VLVLATNRRGDLDSAVTDR 503 >gi|330814218|ref|YP_004358457.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Pelagibacter sp. IMCC9063] gi|327487313|gb|AEA81718.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Pelagibacter sp. IMCC9063] Length = 380 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 68 AKSNILLMGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 127 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 128 YNVEKAQRGIVYIDEVDKIS 147 >gi|323486792|ref|ZP_08092111.1| hypothetical protein HMPREF9474_03862 [Clostridium symbiosum WAL-14163] gi|323399931|gb|EGA92310.1| hypothetical protein HMPREF9474_03862 [Clostridium symbiosum WAL-14163] Length = 658 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 7/64 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAKA-GDLAALLTNLED-----RDVL 109 +LF GPPG GKT AQV+A +L + ++ V++K G+ L N+ D R +L Sbjct: 506 MLFYGPPGTGKTMGAQVIANQLSMELYKVDLSSVMSKYIGETEKNLGNIFDEVKKSRSIL 565 Query: 110 FIDE 113 F DE Sbjct: 566 FFDE 569 >gi|291296855|ref|YP_003508253.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279] gi|290471814|gb|ADD29233.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279] Length = 622 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 95/232 (40%), Gaps = 45/232 (19%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR-- 106 AE VL VGPPG GKT L + VA E GV F S S + G A+ + L D Sbjct: 196 AEIPKGVLLVGPPGTGKTLLTRAVAGEAGVPFFSVSASEFMEMFVGVGASRVRTLFDEAR 255 Query: 107 ----DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL----------- 151 ++FIDE+ + + +G G R +N Sbjct: 256 RNAPAIIFIDELDSIGR-------------KRGAGIGGGHDEREQTLNQILSEMDGFEKD 302 Query: 152 SRFTLIAATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDE 206 + ++AAT R +L L RF + + +E+ K I+Q RG K Sbjct: 303 TSVIVLAATNRPDILDPALLRPGRFDRQVVIGLPTLEERKEILQVHMRGKKFA------- 355 Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258 ++ +R TP+ +G L+ + + A + A+ EI +A + A+DK+ Sbjct: 356 PDVDVNNLARLTPQFSGADLKNLVNEAALQAARENASEITNAH-FQAALDKI 406 >gi|269128700|ref|YP_003302070.1| ATP-dependent metalloprotease FtsH [Thermomonospora curvata DSM 43183] gi|268313658|gb|ACZ00033.1| ATP-dependent metalloprotease FtsH [Thermomonospora curvata DSM 43183] Length = 672 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L ++ + Sbjct: 200 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPSI 259 Query: 109 LFIDEI 114 +FIDEI Sbjct: 260 IFIDEI 265 >gi|187935018|ref|YP_001884419.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B str. Eklund 17B] gi|187723171|gb|ACD24392.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B str. Eklund 17B] Length = 601 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ ++ E GV F S SG Sbjct: 195 VLLVGPPGTGKTLLAKAISGEAGVPFFSISG 225 >gi|167038793|ref|YP_001661778.1| sigma-54 factor interaction domain-containing protein [Thermoanaerobacter sp. X514] gi|307723363|ref|YP_003903114.1| PTS system transcriptional activator [Thermoanaerobacter sp. X513] gi|166853033|gb|ABY91442.1| sigma-54 factor, interaction domain-containing protein [Thermoanaerobacter sp. X514] gi|307580424|gb|ADN53823.1| PTS system transcriptional activator [Thermoanaerobacter sp. X513] Length = 977 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 44/192 (22%) Query: 5 EGLLSRNVSQEDADISLLRPRT---LEEFTGQVEACSNLKVFIEAAKARA----EALDHV 57 + L+ R+ + D ++ P+T L F + + +LKV I AKA L H Sbjct: 103 DNLVQRSTIKNDT-VNFETPKTAKSLLSFKEIIGSEGSLKVQISLAKAAVLYPPHGL-HT 160 Query: 58 LFVGPPGLGKTTLAQVV---ARELGVNFRSTSGPVIAKAGDLA----------------- 97 L VGP G GK+ LA+ + A E G F + V+ D A Sbjct: 161 LIVGPSGSGKSQLAEAMYNYAIESG-RFNENAPFVVFNCADYADNPQLLMAQLFGYVKGA 219 Query: 98 --------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149 A L D +LF+DE+HRL +EIL+ ++ + + GE S R +I Sbjct: 220 FTGADTAKAGLVEKADGGILFLDEVHRLPSEGQEILFYLLDKGKFRRL-GETESTREAQI 278 Query: 150 NLSRFTLIAATT 161 LIAATT Sbjct: 279 -----MLIAATT 285 >gi|113461576|ref|YP_719645.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus somnus 129PT] gi|122945369|sp|Q0I4F0|CLPX_HAES1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|112823619|gb|ABI25708.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus somnus 129PT] Length = 414 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N + Sbjct: 112 NILLIGPTGSGKTLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDI 171 Query: 105 ---DRDVLFIDEIHRLS 118 + +++IDEI +++ Sbjct: 172 EKAQQGIIYIDEIDKIT 188 >gi|60115356|gb|AAX14030.1| ATP-binding subunit heat shock protein ClpX [Azospirillum brasilense] Length = 422 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 110 AKSNILLVGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAR 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 170 LNRRAAQRGIVYIDEVDKIS 189 >gi|71281243|ref|YP_270451.1| ATP-dependent protease ATP-binding subunit ClpX [Colwellia psychrerythraea 34H] gi|123631419|sp|Q47XL9|CLPX_COLP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|71146983|gb|AAZ27456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Colwellia psychrerythraea 34H] Length = 424 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 115 NILLIGPTGSGKTLLAQTLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|9294440|dbj|BAB02560.1| unnamed protein product [Arabidopsis thaliana] Length = 270 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E G NF S +G + GD L L + Sbjct: 19 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVI 78 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 79 IFVDEVDSL 87 >gi|116668719|ref|YP_829652.1| Mername-AA223 peptidase [Arthrobacter sp. FB24] gi|116608828|gb|ABK01552.1| membrane protease FtsH catalytic subunit [Arthrobacter sp. FB24] Length = 689 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 178 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 235 >gi|46190461|ref|ZP_00121496.2| COG1219: ATP-dependent protease Clp, ATPase subunit [Bifidobacterium longum DJO10A] gi|189439547|ref|YP_001954628.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium longum DJO10A] gi|189427982|gb|ACD98130.1| ATP-dependent Clp protease ATPase subunit [Bifidobacterium longum DJO10A] Length = 459 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G+GKT LAQ +AR + V F T + +AG D+ +L L D Sbjct: 146 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 205 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 206 GDVSRAQHGIIYIDEIDKIA 225 >gi|326504648|dbj|BAK06615.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 920 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT+LA A +LG N + +GP I Sbjct: 350 ILLYGPPGTGKTSLASSCAYDLGANLFTINGPEI 383 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGD----LAALLTNLEDR--DV 108 +L +GPPG KT +A+ VA E +NF + GP + GD + +L +D + Sbjct: 679 LLMIGPPGCSKTLMARAVASEAKMNFLAVKGPELFSKWVGDSEKAVRSLFAKAKDNAPAI 738 Query: 109 LFIDEIHRLSI 119 LF DEI L++ Sbjct: 739 LFFDEIDGLAV 749 >gi|315049065|ref|XP_003173907.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS 118893] gi|311341874|gb|EFR01077.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS 118893] Length = 397 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ +G + + + F+E+ + L H+L GPPG GKT+ +AR + Sbjct: 52 RPDTLDDVSGHQDIIATINRFVESNR-----LPHLLLYGPPGTGKTSTILALARRI 102 >gi|296447237|ref|ZP_06889167.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium OB3b] gi|296255296|gb|EFH02393.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium OB3b] Length = 637 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ VA E GV F S +G Sbjct: 201 ILLVGPPGTGKTLLARAVAGEAGVPFYSITG 231 >gi|284926235|gb|ADC28587.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni IA3902] Length = 538 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218 >gi|283956403|ref|ZP_06373883.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 1336] gi|283792123|gb|EFC30912.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 1336] Length = 536 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 186 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 216 >gi|297567008|ref|YP_003685980.1| ATP-dependent protease La [Meiothermus silvanus DSM 9946] gi|296851457|gb|ADH64472.1| ATP-dependent protease La [Meiothermus silvanus DSM 9946] Length = 817 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 46/211 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100 +LFVGPPG+GKT++A+ +A+ LG + S + D + AL Sbjct: 366 LLFVGPPGVGKTSIAKSIAKSLGRKYVRISLGGVRDESDIRGHRRTYIGAMPGRIIQALR 425 Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 VL +DE+ +L + + E+L PA D +G V ++S Sbjct: 426 QAGSKNPVLLLDEVDKLGVSYQGDPASALLELLDPAQNKEFTDHYLG-------VPFDMS 478 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203 I + PL DR + ++ E E L + +++ G K + + Sbjct: 479 ETLFICTANFPENIPGPLMDRMELIEFTSYIEQEKLEIAKRYLLPRQMLENGLKENQVVI 538 Query: 204 TDEAACEIAMRS------RGTPRIAGRLLRR 228 T+ A + R R G LLR+ Sbjct: 539 TEAALSRLITHYTREAGVRNLEREIGSLLRK 569 >gi|226363733|ref|YP_002781515.1| ATP-dependent protease FtsH [Rhodococcus opacus B4] gi|226242222|dbj|BAH52570.1| ATP-dependent protease FtsH [Rhodococcus opacus B4] Length = 768 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 14/94 (14%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VE +K F++ AR +AL VL GPPG GKT LA+ VA E GV F + SG Sbjct: 175 VEELYEIKDFLQNP-ARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGS 233 Query: 89 VIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G A+ + ++ D+ ++F+DEI Sbjct: 234 DFVEMFVGVGASRVRDMFDQAKQNSPCIIFVDEI 267 >gi|170516913|gb|ACB15392.1| ClpX [Bifidobacterium longum] Length = 467 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G+GKT LAQ +AR + V F T + +AG D+ +L L D Sbjct: 171 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 230 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 231 GDVSRAQHGIIYIDEIDKIA 250 >gi|189024263|ref|YP_001935031.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus S19] gi|260546575|ref|ZP_05822314.1| ATP-dependent protease ATP-binding subunit [Brucella abortus NCTC 8038] gi|238689370|sp|B2S5W0|CLPX_BRUA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189019835|gb|ACD72557.1| ATP-dependent protease ATP-binding subunit [Brucella abortus S19] gi|260095625|gb|EEW79502.1| ATP-dependent protease ATP-binding subunit [Brucella abortus NCTC 8038] Length = 424 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTQAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|154148871|ref|YP_001406629.1| putative cell division protease FtsH-like protein [Campylobacter hominis ATCC BAA-381] gi|153804880|gb|ABS51887.1| putative Cell division protease FtsH-like protein [Campylobacter hominis ATCC BAA-381] Length = 561 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/36 (52%), Positives = 24/36 (66%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK 92 VL +GPPG+GKT +A+ VA E GV F SG A+ Sbjct: 199 VLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGASFAE 234 >gi|148926085|ref|ZP_01809771.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845564|gb|EDK22656.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni CG8486] Length = 527 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 177 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 207 >gi|124003041|ref|ZP_01687892.1| respiratory chain complexes assembly protein RCA1 [Microscilla marina ATCC 23134] gi|123991691|gb|EAY31099.1| respiratory chain complexes assembly protein RCA1 [Microscilla marina ATCC 23134] Length = 696 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E GV F S SG V A + L +++ ++ Sbjct: 244 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEMFVGVGAARVRDLFKQAKEKAPCIV 303 Query: 110 FIDEI 114 FIDEI Sbjct: 304 FIDEI 308 >gi|57237830|ref|YP_179078.1| cell division protein FtsH, putative [Campylobacter jejuni RM1221] gi|57166634|gb|AAW35413.1| cell division protein FtsH, putative [Campylobacter jejuni RM1221] Length = 538 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218 >gi|23465516|ref|NP_696119.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium longum NCC2705] gi|23326176|gb|AAN24755.1| ATP-dependent specificity component of the Clp protease [Bifidobacterium longum NCC2705] Length = 497 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G+GKT LAQ +AR + V F T + +AG D+ +L L D Sbjct: 171 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 230 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 231 GDVSRAQHGIIYIDEIDKIA 250 >gi|86136457|ref|ZP_01055036.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter sp. MED193] gi|85827331|gb|EAQ47527.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter sp. MED193] Length = 776 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 23/161 (14%) Query: 10 RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPG 64 ++V+++DA++ ++L+ GQ +A L I+ A+A + + + LF GP G Sbjct: 452 KSVTKDDAEVLKDLEKSLKRVVFGQDDAIDALSSAIKLARAGLREPEKPIGNYLFAGPTG 511 Query: 65 LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107 +GKT +A+ +A LGV R P D LLT+ D+ Sbjct: 512 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 571 Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 VL +DEI + V IL M++ QL G + R+V Sbjct: 572 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRAVNFRNV 612 Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 42/156 (26%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 N + DI L R+ E VE C ++V K ++ L VG PG+GKT + Sbjct: 190 NAKSREGDIDPLIGRSHE-----VERC--IQVLCRRRK------NNPLLVGDPGVGKTAI 236 Query: 71 AQVVAREL-----------GVNFRSTSGPVIAKA---GD----LAALLTNLEDR--DVLF 110 A+ +AR++ F G ++A GD L A++T LED VLF Sbjct: 237 AEGLARKIVQGEVPNVLAETTIFSLDMGALLAGTRYRGDFEERLKAVVTELEDHPDGVLF 296 Query: 111 IDEIHRL---------SIIVEEILYPAMEDFQLDLM 137 IDEIH + ++ +L PA++ +L M Sbjct: 297 IDEIHTVIGAGATSGGAMDASNLLKPALQGGKLRTM 332 >gi|170718337|ref|YP_001783565.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus somnus 2336] gi|189044137|sp|B0UW19|CLPX_HAES2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|168826466|gb|ACA31837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus somnus 2336] Length = 414 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG L LL N + Sbjct: 112 NILLIGPTGSGKTLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDI 171 Query: 105 ---DRDVLFIDEIHRLS 118 + +++IDEI +++ Sbjct: 172 EKAQQGIIYIDEIDKIT 188 >gi|68482739|ref|XP_714679.1| potential mitochondrial ATP-dependent protease [Candida albicans SC5314] gi|74679828|sp|Q59YV0|LONP2_CANAL RecName: Full=Lon protease homolog 2, peroxisomal gi|46436267|gb|EAK95632.1| potential mitochondrial ATP-dependent protease [Candida albicans SC5314] Length = 1258 Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 44/184 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-----------GPVIAKAGDLAALLTNLED 105 ++ GPPG GKT+LA+ +A LG NF+ S G G + LL Sbjct: 724 IMLAGPPGTGKTSLAKSIASALGRNFQRISLGGIKDESEIRGHRRTYVGAMPGLLIQALR 783 Query: 106 RD-----VLFIDEIHRL---------------SIIVEEILYPAMEDFQLDLMVGEGPSAR 145 + V+ +DEI ++ S + E+L P + +D +G Sbjct: 784 KSRCMNPVILLDEIDKVIGGNSGGVNKFNGDPSAALLEVLDPEQNNTFIDHYLG------ 837 Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTG 200 ++LS+ I +T PL DR + I + Y+ + K ++ R K G Sbjct: 838 -FPVDLSQVIFICTANDPWNMTRPLLDRLEM-IEIGAYDYNEKLIIGKKYLLPRQIKRNG 895 Query: 201 LAVT 204 VT Sbjct: 896 FPVT 899 >gi|110637033|ref|YP_677240.1| cell division protein, ATP-dependent metalloprotease [Cytophaga hutchinsonii ATCC 33406] gi|110279714|gb|ABG57900.1| membrane protease FtsH catalytic subunit [Cytophaga hutchinsonii ATCC 33406] Length = 692 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E GV F S SG V A + L +++ ++ Sbjct: 241 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEMFVGVGAARVRDLFKQAKEKAPCII 300 Query: 110 FIDEI 114 FIDEI Sbjct: 301 FIDEI 305 >gi|113476986|ref|YP_723047.1| FtsH-2 peptidase [Trichodesmium erythraeum IMS101] gi|110168034|gb|ABG52574.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Trichodesmium erythraeum IMS101] Length = 621 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 11/94 (11%) Query: 29 EFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 E T V+ K F E A +L VGPPG GKT L++ VA E GV F S SG Sbjct: 172 ELTEIVDFLKTPKCFTEIG---ARIPKGLLLVGPPGTGKTLLSKAVAGEAGVPFFSISGS 228 Query: 89 VIAK--AGDLAALLTNLEDRD------VLFIDEI 114 + G AA + +L + ++FIDEI Sbjct: 229 EFVELFVGTGAARVRDLFKQAKKKAPCIIFIDEI 262 >gi|329848734|ref|ZP_08263762.1| metalloprotease [Asticcacaulis biprosthecum C19] gi|328843797|gb|EGF93366.1| metalloprotease [Asticcacaulis biprosthecum C19] Length = 627 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VL 109 L VGPPG GKT LA+ VA E GV F S SG + G A+ + ++ D+ ++ Sbjct: 196 LLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDMFDQAKKNAPCII 255 Query: 110 FIDEI 114 FIDEI Sbjct: 256 FIDEI 260 >gi|322368817|ref|ZP_08043384.1| AAA family ATPase, CDC48 subfamily protein [Haladaptatus paucihalophilus DX253] gi|320551548|gb|EFW93195.1| AAA family ATPase, CDC48 subfamily protein [Haladaptatus paucihalophilus DX253] Length = 753 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ F++ SGP I Sbjct: 227 VLLHGPPGTGKTLMAKAVANEIDAYFQTISGPEI 260 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A VL GPPG GKT +A+ VA E NF S GP Sbjct: 495 QAAKGVLMYGPPGTGKTLMAKAVANESDSNFISIKGP 531 >gi|302874447|ref|YP_003843080.1| Sigma 54 interacting domain-containing protein [Clostridium cellulovorans 743B] gi|307690946|ref|ZP_07633392.1| Sigma 54 interacting domain-containing protein [Clostridium cellulovorans 743B] gi|302577304|gb|ADL51316.1| Sigma 54 interacting domain protein [Clostridium cellulovorans 743B] Length = 567 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74 RP+ EE GQ E LK + + HV+ GPPG+GKT A++V Sbjct: 66 RPKNFEEIIGQEEGIKALKAALCGGNPQ-----HVIIYGPPGIGKTAAARLV 112 >gi|295444927|ref|NP_001171384.1| spermatogenesis-associated protein 5 [Sus scrofa] gi|292485838|gb|ADE28534.1| spermatogenesis associated 5 [Sus scrofa] Length = 887 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 384 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSI 443 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 444 IFIDELDALC 453 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 658 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 689 >gi|315498688|ref|YP_004087492.1| ATP-dependent metalloprotease ftsh [Asticcacaulis excentricus CB 48] gi|315416700|gb|ADU13341.1| ATP-dependent metalloprotease FtsH [Asticcacaulis excentricus CB 48] Length = 633 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/30 (66%), Positives = 21/30 (70%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ VA E GV F S SG Sbjct: 190 LLVGPPGTGKTMLARAVAGEAGVPFFSISG 219 >gi|193215173|ref|YP_001996372.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC 35110] gi|193088650|gb|ACF13925.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC 35110] Length = 640 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ VA E GV F S SG Sbjct: 229 VLLLGPPGTGKTLLAKAVAGEAGVPFFSMSG 259 >gi|154341847|ref|XP_001566875.1| AAA family ATPase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 944 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL GPPG KT LA+ +A E +NF S GP V +K GD + ++ +R V Sbjct: 712 VLLYGPPGCSKTMLAKALANESRMNFISVKGPEVFSKWVGDSEKAVRDIFERARAASPCV 771 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 772 VFIDEL 777 >gi|118577019|ref|YP_876762.1| AAA ATPase [Cenarchaeum symbiosum A] gi|118195540|gb|ABK78458.1| AAA ATPase [Cenarchaeum symbiosum A] Length = 709 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 18/81 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106 VL GPPG GKT LA+ VA E NF GP I + E+R Sbjct: 214 VLLYGPPGTGKTLLAKAVAGETNANFSYIGGPEI-----MGKYYGESEERLREMFREAEE 268 Query: 107 ---DVLFIDEIHRLSIIVEEI 124 ++FIDEI ++ +E+ Sbjct: 269 NAPSIIFIDEIDSIAPKRDEV 289 >gi|50286221|ref|XP_445539.1| hypothetical protein [Candida glabrata CBS 138] gi|49524844|emb|CAG58450.1| unnamed protein product [Candida glabrata] Length = 834 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 569 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 600 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT++A +A EL V F S S P + Sbjct: 235 VLLHGPPGCGKTSIANALAGELQVPFISISAPSV 268 >gi|16329797|ref|NP_440525.1| cell division protein FtsH [Synechocystis sp. PCC 6803] gi|2492511|sp|P73179|FTSH1_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|1652282|dbj|BAA17205.1| cell division protein; FtsH [Synechocystis sp. PCC 6803] Length = 665 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 247 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 277 >gi|88855130|ref|ZP_01129795.1| ATP-dependent protease ATP-binding subunit [marine actinobacterium PHSC20C1] gi|88815658|gb|EAR25515.1| ATP-dependent protease ATP-binding subunit [marine actinobacterium PHSC20C1] Length = 425 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L D Sbjct: 117 AKSNILLIGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 176 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 177 YDVKRAETGIIYIDEIDKIA 196 >gi|306836929|ref|ZP_07469881.1| cell division protein HflB [Corynebacterium accolens ATCC 49726] gi|304567184|gb|EFM42797.1| cell division protein HflB [Corynebacterium accolens ATCC 49726] Length = 249 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233 >gi|237749838|ref|ZP_04580318.1| membrane bound zinc metallopeptidase [Helicobacter bilis ATCC 43879] gi|229374588|gb|EEO24979.1| membrane bound zinc metallopeptidase [Helicobacter bilis ATCC 43879] Length = 635 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E V F S SG + G A+ + +L ++ + Sbjct: 210 VLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFIEMFVGLGASRVRDLFEKAKKEAPSI 269 Query: 109 LFIDEI 114 +FIDEI Sbjct: 270 IFIDEI 275 >gi|261368793|ref|ZP_05981676.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176] gi|282569057|gb|EFB74592.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176] Length = 626 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F S +G Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSIAG 235 >gi|222424701|dbj|BAH20304.1| AT2G30950 [Arabidopsis thaliana] Length = 586 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 154 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 184 >gi|195451441|ref|XP_002072921.1| GK13431 [Drosophila willistoni] gi|194169006|gb|EDW83907.1| GK13431 [Drosophila willistoni] Length = 680 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 437 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 496 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 497 IFIDEIDAL 505 >gi|145257829|ref|XP_001401861.1| protein YME1 [Aspergillus niger CBS 513.88] gi|134074464|emb|CAK38759.1| unnamed protein product [Aspergillus niger] Length = 803 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F SG V A + L T + + Sbjct: 374 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRELFTQARSKSPAI 433 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 434 IFIDEL 439 >gi|94970228|ref|YP_592276.1| ATPase [Candidatus Koribacter versatilis Ellin345] gi|94552278|gb|ABF42202.1| ATPase associated with various cellular activities, AAA_3 [Candidatus Koribacter versatilis Ellin345] Length = 319 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL--AALLTNLEDR------- 106 H+L G PG+GKTTL VAR + VNF+ D+ ++ + +E + Sbjct: 43 HLLIEGVPGVGKTTLGHAVARAMDVNFQRVQFTSDMLPSDVLGISVYSTVEQKFEFKRGP 102 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 +VL DEI+R + + L AM + Q+ Sbjct: 103 IFTNVLLADEINRTTPKTQSALLEAMNENQV 133 >gi|145358053|ref|NP_568311.2| FTSH6 (FTSH PROTEASE 6); ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding [Arabidopsis thaliana] gi|122231638|sp|Q1PDW5|FTSH6_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 6, chloroplastic; Short=AtFTSH6; Flags: Precursor gi|91806862|gb|ABE66158.1| FtsH protease [Arabidopsis thaliana] gi|332004753|gb|AED92136.1| cell division protease ftsH-6 [Arabidopsis thaliana] Length = 688 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA + + +E K A+ VL GPPG GKT LA+ +A E Sbjct: 222 TFEDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGEA 281 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 282 GVPFFSLSG 290 >gi|297605428|ref|NP_001057200.2| Os06g0225900 [Oryza sativa Japonica Group] gi|51535008|dbj|BAD37292.1| spastin-like [Oryza sativa Japonica Group] gi|255676849|dbj|BAF19114.2| Os06g0225900 [Oryza sativa Japonica Group] Length = 271 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108 +L GPPG GKT LA+ +A E G NF S +G + A L L + R + Sbjct: 19 ILLFGPPGTGKTLLAKALATEAGANFISITGSNLTSKWFGDAEKLTKALFSFASRLAPVI 78 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 79 IFVDEVDSL 87 >gi|22299375|ref|NP_682622.1| cell division protein [Thermosynechococcus elongatus BP-1] gi|22295558|dbj|BAC09384.1| cell division protein [Thermosynechococcus elongatus BP-1] Length = 644 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 208 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 238 >gi|19909896|dbj|BAB87822.1| katanin [Arabidopsis thaliana] Length = 523 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 275 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 334 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 335 IFIDEIDSL 343 >gi|222823705|ref|YP_002575279.1| cell division protein FtsH [Campylobacter lari RM2100] gi|222538927|gb|ACM64028.1| cell division protein FtsH [Campylobacter lari RM2100] Length = 532 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 182 VLLVGPPGVGKTLIAKAVAGEAGVPFFYQSG 212 >gi|110633523|ref|YP_673731.1| ATP-dependent protease ATP-binding subunit [Mesorhizobium sp. BNC1] gi|123162493|sp|Q11J59|CLPX_MESSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|110284507|gb|ABG62566.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chelativorans sp. BNC1] Length = 424 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 115 NILLIGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 ERAQRGIVYIDEIDKIS 191 >gi|332004754|gb|AED92137.1| cell division protease ftsH-6 [Arabidopsis thaliana] Length = 709 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA + + +E K A+ VL GPPG GKT LA+ +A E Sbjct: 220 TFEDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGEA 279 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 280 GVPFFSLSG 288 >gi|323456794|gb|EGB12660.1| hypothetical protein AURANDRAFT_18406 [Aureococcus anophagefferens] Length = 420 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFR--STSGPVIAKAGDLAALLTNL------EDRDV 108 +L GPPG GK+ LA+ VA E F S+S V G+ L+ NL E+ + Sbjct: 162 ILLYGPPGTGKSFLAKAVATEADAQFFAVSSSDLVSKWQGESERLVKNLFEMARHEEHAI 221 Query: 109 LFIDEIHRL 117 +FIDEI + Sbjct: 222 IFIDEIDSM 230 >gi|321250239|ref|XP_003191739.1| helicase [Cryptococcus gattii WM276] gi|317458206|gb|ADV19952.1| Helicase, putative [Cryptococcus gattii WM276] Length = 752 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A VL GPPG GKT LA+ VA E NF S GP Sbjct: 438 DAPSGVLLWGPPGCGKTLLAKAVANESRANFISVKGP 474 >gi|297484618|ref|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like, partial [Bos taurus] gi|296478718|gb|DAA20833.1| spermatogenesis associated 5-like [Bos taurus] Length = 1004 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 501 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSI 560 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 561 IFIDELDAL 569 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 775 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 806 >gi|256545930|ref|ZP_05473285.1| cell division protease FtsH family protein 3 [Anaerococcus vaginalis ATCC 51170] gi|256398352|gb|EEU11974.1| cell division protease FtsH family protein 3 [Anaerococcus vaginalis ATCC 51170] Length = 695 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 VFIDEI 274 >gi|289577374|ref|YP_003476001.1| Vesicle-fusing ATPase [Thermoanaerobacter italicus Ab9] gi|297543661|ref|YP_003675963.1| Vesicle-fusing ATPase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527087|gb|ADD01439.1| Vesicle-fusing ATPase [Thermoanaerobacter italicus Ab9] gi|296841436|gb|ADH59952.1| Vesicle-fusing ATPase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 498 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 29/142 (20%) Query: 1 MMDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE-------AAKARA 51 +++ +G++S +N+ + +++IS E+ GQ A + LK ++ +K Sbjct: 40 IIENKGIISGSKNIIKPESEISF------EDIGGQSTAIAELKEALDFVINREKISKMGI 93 Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------ 103 + +L GPPG GKT LA+ A+ +F +TSG + AG A + NL Sbjct: 94 RPIKGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEMYAGVGAQRVRNLFKTAKN 153 Query: 104 ------EDRDVLFIDEIHRLSI 119 ++ ++FIDEI L + Sbjct: 154 IARKEGKNSAIIFIDEIDILGV 175 >gi|311740143|ref|ZP_07713975.1| ATP-dependent metalloprotease FtsH [Corynebacterium pseudogenitalium ATCC 33035] gi|311304698|gb|EFQ80769.1| ATP-dependent metalloprotease FtsH [Corynebacterium pseudogenitalium ATCC 33035] Length = 785 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233 >gi|226227817|ref|YP_002761923.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemmatimonas aurantiaca T-27] gi|226091008|dbj|BAH39453.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemmatimonas aurantiaca T-27] Length = 420 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G+GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 109 NILLIGPTGVGKTLLAQTLARILDVPFTIADATTLTEAGYVGEDVENILVRLLQAGDFNV 168 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 169 AECERGIVYIDEIDKIA 185 >gi|225377814|ref|ZP_03755035.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM 16841] gi|225210325|gb|EEG92679.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM 16841] Length = 456 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%) Query: 1 MMDREGLLSRNVSQEDADISLLRPR--TLEEFTGQVEACSNLKVFIE----AAKAR---A 51 +M R G + V + A + + + T ++ GQ EA +L+ ++ K R A Sbjct: 177 LMKRMGGGAMGVGKSTAKVYVEKTTGVTFKDVAGQDEAKESLQEVVDFLHNPKKYREIGA 236 Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 + L VGPPG GKT LA+ VA E GV F S +G Sbjct: 237 KLPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSLAG 272 >gi|223984578|ref|ZP_03634705.1| hypothetical protein HOLDEFILI_02001 [Holdemania filiformis DSM 12042] gi|223963425|gb|EEF67810.1| hypothetical protein HOLDEFILI_02001 [Holdemania filiformis DSM 12042] Length = 772 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 38/222 (17%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--VLFVGPPGLGKTTL 70 ++++ D+ ++ R E+ G +E N + A K +L+ + VGPPG+GKT+L Sbjct: 306 TEDNEDLKRVQQRLDEDHFG-LEKVKNRIMEYLAVKQMTHSLNAPILCLVGPPGVGKTSL 364 Query: 71 AQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------------DVLFIDEI 114 A+ VAR L F +++ G V +A G L +L R V IDEI Sbjct: 365 AKSVARALDRKFVKASLGGVRDEAEIRGHRRTYLGSLPGRIIQGMKKAGVVNPVFLIDEI 424 Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 ++ S + E+L P D + E +LS+ IA + + Sbjct: 425 DKMASDYKGDPSSAMLEVLDPEQNKLFSDNYLEE-------PYDLSKVMFIATANTLDTI 477 Query: 167 TNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVT 204 L+DR I ++ E+E + + ++++ A++ GL + Sbjct: 478 PAALRDRLEIIELSSYTEVEKVSIAKEHLIRKQAEINGLKAS 519 >gi|241953439|ref|XP_002419441.1| mitochondrial ATP-dependent protease, putative [Candida dubliniensis CD36] gi|300681037|sp|B9WEC4|LONP2_CANDC RecName: Full=Lon protease homolog 2, peroxisomal gi|223642781|emb|CAX43035.1| mitochondrial ATP-dependent protease, putative [Candida dubliniensis CD36] Length = 1247 Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 45/186 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-----------GPVIAKAGDLAALLTNLED 105 ++ GPPG GKT+LA+ +A LG NF+ S G G + LL Sbjct: 717 IMLAGPPGTGKTSLAKSIASALGRNFQRISLGGIKDESEIRGHRRTYVGAMPGLLIQALR 776 Query: 106 RD-----VLFIDEIHRL----------------SIIVEEILYPAMEDFQLDLMVGEGPSA 144 + V+ +DEI ++ S + E+L P + +D +G Sbjct: 777 KSRCMNPVILLDEIDKVIGGNNSGGVNKFNGDPSAALLEVLDPEQNNTFIDHYLG----- 831 Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLT 199 I+LS+ I +T PL DR I + Y+ + K ++ R K Sbjct: 832 --FPIDLSQVIFICTANDPWNMTRPLLDRLET-IEIGAYDYNEKLIIGKKYLLPRQIKRN 888 Query: 200 GLAVTD 205 G V D Sbjct: 889 GFPVVD 894 >gi|218461293|ref|ZP_03501384.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli Kim 5] Length = 333 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 21 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 80 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 81 YNVERAQRGIVYIDEVDKIS 100 >gi|205356716|ref|ZP_03223477.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345454|gb|EDZ32096.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni CG8421] Length = 536 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 186 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 216 >gi|157415262|ref|YP_001482518.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 81116] gi|157386226|gb|ABV52541.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 81116] gi|307747904|gb|ADN91174.1| cell division protein (ftsH) [Campylobacter jejuni subsp. jejuni M1] gi|315932133|gb|EFV11076.1| ATPase family associated with various cellular activities (AAA) family protein [Campylobacter jejuni subsp. jejuni 327] Length = 538 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218 >gi|153952493|ref|YP_001397916.1| putative cell division protein FtsH [Campylobacter jejuni subsp. doylei 269.97] gi|152939939|gb|ABS44680.1| putative cell division protein FtsH [Campylobacter jejuni subsp. doylei 269.97] Length = 538 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218 >gi|115374881|ref|ZP_01462154.1| ATP-dependent protease La [Stigmatella aurantiaca DW4/3-1] gi|310820097|ref|YP_003952455.1| ATP-dependent protease la 1 [Stigmatella aurantiaca DW4/3-1] gi|115368099|gb|EAU67061.1| ATP-dependent protease La [Stigmatella aurantiaca DW4/3-1] gi|309393169|gb|ADO70628.1| ATP-dependent protease La 1 [Stigmatella aurantiaca DW4/3-1] Length = 819 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+LA+ +AR G F R + G V +A G L L Sbjct: 364 LCFVGPPGVGKTSLARSIARATGRKFVRLSLGGVRDEAEIRGHRRTYIGAMPGKLIQSLK 423 Query: 102 NL-EDRDVLFIDEIHRLSI--------IVEEILYPA----MEDFQLDLMVGEGPSARSVK 148 + V +DEI ++S + E+L P D LDL Sbjct: 424 KAGSNNPVFLLDEIDKMSTDFRGDPSAALLEVLDPEQNHNFNDHYLDL-----------D 472 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 +LS+ I + + PLQDR + IR+ Y + +I +R Sbjct: 473 YDLSKVMFICTANTMHNIPGPLQDRMEV-IRIAGYTEPEKLSIARR 517 >gi|157110895|ref|XP_001651297.1| spermatogenesis associated factor [Aedes aegypti] gi|108883898|gb|EAT48123.1| spermatogenesis associated factor [Aedes aegypti] Length = 735 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 16/109 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKARAEA--------LDHVLFVGPPGLGKTTLAQVVAR 76 +TL+ G E L++ + R EA L +L GPPG KTT+A+ +A Sbjct: 456 QTLDSIGGMDELKKVLRISVLGPLRRPEAFRRFGMSPLKGILLYGPPGCAKTTIAKCLAA 515 Query: 77 ELGVNFRSTSG-----PVIAKAGDLAALLTN---LEDRDVLFIDEIHRL 117 E + F S S P + + L A L N L V+F+DEI L Sbjct: 516 ESRMTFVSVSAAEVYSPYVGDSEKLIAKLFNQARLSAPAVIFLDEIDSL 564 >gi|7671494|emb|CAB89335.1| FtsH-like protein Pftf precursor-like [Arabidopsis thaliana] Length = 687 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA + + +E K A+ VL GPPG GKT LA+ +A E Sbjct: 221 TFEDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGEA 280 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 281 GVPFFSLSG 289 >gi|319794077|ref|YP_004155717.1| ATP-dependent clp protease, ATP-binding subunit clpx [Variovorax paradoxus EPS] gi|315596540|gb|ADU37606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Variovorax paradoxus EPS] Length = 421 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 117 NILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEV 176 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 ERAQRGIVYIDEIDKIS 193 >gi|313220370|emb|CBY31225.1| unnamed protein product [Oikopleura dioica] Length = 634 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Query: 12 VSQEDADISLLR--PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 V D + S +R LEEF V+ +N + AK A+ +L GPPG GKT Sbjct: 159 VESSDKNFSDVRGMDEILEEFEQAVDLLTNGDKY---AKIGAKVPRGILLNGPPGTGKTL 215 Query: 70 LAQVVARELGVNFRSTSG 87 +A+ +A E GV F SG Sbjct: 216 IAKAIAGEAGVPFLYASG 233 >gi|289679612|ref|ZP_06500502.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. syringae FF5] Length = 212 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPR+ E GQ LK I A + + L H LF G G+GKTT+A+++A+ L Sbjct: 11 RPRSFREMVGQAHV---LKALINALDS--QRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65 Query: 82 FRSTSGPV 89 TS P Sbjct: 66 TGITSTPC 73 >gi|253742391|gb|EES99226.1| Replication factor C, subunit 4 [Giardia intestinalis ATCC 50581] Length = 322 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 19/123 (15%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81 RPRTL+ G E L+ F AA+ L ++L G PGLGKTT+A +A + LG N Sbjct: 11 RPRTLDGLIGNPEILRRLRYF--AAQGN---LPNILLTGGPGLGKTTIALCLANQMLGSN 65 Query: 82 ----FRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSIIVEEILYPA 128 F + D+ A + + V +F+DE ++ +++L Sbjct: 66 RSEAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQVLRRI 125 Query: 129 MED 131 M+D Sbjct: 126 MDD 128 >gi|227546001|ref|ZP_03976050.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213635|gb|EEI81484.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 472 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G+GKT LAQ +AR + V F T + +AG D+ +L L D Sbjct: 146 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 205 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 206 GDVSRAQHGIIYIDEIDKIA 225 >gi|239621943|ref|ZP_04664974.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132956|ref|YP_004000295.1| clpx [Bifidobacterium longum subsp. longum BBMN68] gi|317482287|ref|ZP_07941308.1| ATP-dependent Clp protease [Bifidobacterium sp. 12_1_47BFAA] gi|322688892|ref|YP_004208626.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium longum subsp. infantis 157F] gi|322690867|ref|YP_004220437.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|239515134|gb|EEQ55001.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517063|emb|CBK70679.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bifidobacterium longum subsp. longum F8] gi|311773938|gb|ADQ03426.1| ClpX [Bifidobacterium longum subsp. longum BBMN68] gi|316916303|gb|EFV37704.1| ATP-dependent Clp protease [Bifidobacterium sp. 12_1_47BFAA] gi|320455723|dbj|BAJ66345.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|320460228|dbj|BAJ70848.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium longum subsp. infantis 157F] Length = 472 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G+GKT LAQ +AR + V F T + +AG D+ +L L D Sbjct: 146 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 205 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 206 GDVSRAQHGIIYIDEIDKIA 225 >gi|239815494|ref|YP_002944404.1| ATP-dependent protease ATP-binding subunit ClpX [Variovorax paradoxus S110] gi|259491272|sp|C5CJT5|CLPX_VARPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|239802071|gb|ACS19138.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Variovorax paradoxus S110] Length = 421 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 117 NILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEV 176 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 ERAQRGIVYIDEIDKIS 193 >gi|163753151|ref|ZP_02160275.1| ATP-dependent protease ATP-binding subunit [Kordia algicida OT-1] gi|161326883|gb|EDP98208.1| ATP-dependent protease ATP-binding subunit [Kordia algicida OT-1] Length = 410 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103 +++ VG G GKT +A+ +AR L V V+ +AG D+ ++LT NL Sbjct: 109 NIIMVGQTGTGKTLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNL 168 Query: 104 E--DRDVLFIDEIHRLS 118 E +R ++FIDEI +++ Sbjct: 169 EKAERGIVFIDEIDKIA 185 >gi|134103754|ref|YP_001109415.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora erythraea NRRL 2338] gi|291007720|ref|ZP_06565693.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora erythraea NRRL 2338] gi|133916377|emb|CAM06490.1| putative Clp protease ATP-binding subunit [Saccharopolyspora erythraea NRRL 2338] Length = 432 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ D DV Sbjct: 121 NILLIGPTGCGKTHLAQTLARMLDVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 180 Query: 109 -------LFIDEIHRLS 118 L+IDE+ ++S Sbjct: 181 ARAQTGILYIDEVDKVS 197 >gi|124514480|gb|EAY55993.1| ATP-dependent Clp protease, ATP-binding subunit [Leptospirillum rubarum] Length = 426 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 114 NILMIGPTGTGKTLLAQTLARILEVPFAIADATTLTEAGYVGEDVENIILKLLQAADYDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 174 EKAERGIVYIDEIDKIS 190 >gi|145552042|ref|XP_001461697.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124429533|emb|CAK94324.1| unnamed protein product [Paramecium tetraurelia] Length = 384 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL+E G + L+ A A+ L +++ VGPPG+GKT+ +AR++ Sbjct: 12 RPKTLDEVHGNSDIVDKLR-----AIAKMGNLPNIILVGPPGIGKTSSVLCLARQI 62 >gi|32478841|gb|AAP83637.1| katanin [Gossypium hirsutum] Length = 520 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 272 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 331 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 332 IFIDEIDSL 340 >gi|46581704|ref|YP_012512.1| ATP-dependent protease La, truncation [Desulfovibrio vulgaris str. Hildenborough] gi|46451127|gb|AAS97772.1| ATP-dependent protease La, truncation [Desulfovibrio vulgaris str. Hildenborough] Length = 702 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 53/221 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98 + FVGPPG+GKT++ Q +A+ + F R+ +G + + + A Sbjct: 268 LCFVGPPGVGKTSVGQAIAKAMNRPFVRLSLADLRDEAELRGHRRTYAGAMPGRI--MQA 325 Query: 99 LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 L T V +DE+ ++ ++ + E+L P D LD V + + Sbjct: 326 LRTAGVRNPVFMLDEMDKMGQDARSDPAMALLELLDPEQNDRFLDRYV-------DLPFD 378 Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDE 206 LS IA + PL DR + + E E + ++ R + GL Sbjct: 379 LSEVMFIATANDTSRMRGPLLDRLEVVPFAGYSEDEKADIASRFLLPRQLREHGLV---- 434 Query: 207 AACEIAMRSRGTPRIAGRLLRR-VRDFAEVAHAKTITREIA 246 P +A LRR VRD+ + A + + RE+A Sbjct: 435 ---------HPRPVVADEALRRIVRDYTDEAGVRGLERELA 466 >gi|61211644|sp|Q8G5R1|CLPX_BIFLO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX Length = 472 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G+GKT LAQ +AR + V F T + +AG D+ +L L D Sbjct: 146 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 205 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 206 GDVSRAQHGIIYIDEIDKIA 225 >gi|94310822|ref|YP_584032.1| ATP-dependent protease ATP-binding subunit ClpX [Cupriavidus metallidurans CH34] gi|166214808|sp|Q1LM63|CLPX_RALME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|93354674|gb|ABF08763.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Cupriavidus metallidurans CH34] Length = 425 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 EKAQRGIVYIDEIDKIS 193 >gi|332288868|ref|YP_004419720.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium anatis UMN179] gi|330431764|gb|AEC16823.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium anatis UMN179] Length = 415 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA--------LLTNLE--- 104 ++L +GP G GKT LAQ +AR++ V F + +AG + LL N + Sbjct: 116 NILLIGPTGSGKTLLAQTLARQINVPFAIADATTLTEAGYVGEDVENIIQRLLQNCDYDT 175 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI +++ Sbjct: 176 EKAEQGIIYIDEIDKIT 192 >gi|312282199|dbj|BAJ33965.1| unnamed protein product [Thellungiella halophila] Length = 697 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 265 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 295 >gi|301060526|ref|ZP_07201366.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [delta proteobacterium NaphS2] gi|300445369|gb|EFK09294.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [delta proteobacterium NaphS2] Length = 415 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 17/94 (18%) Query: 39 NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG---- 94 N KV +E + ++L +GP G GKT LAQ +AR L V F + +AG Sbjct: 97 NTKVDMEGVEIEKS---NILLIGPTGSGKTLLAQTLARILKVPFTIADATTLTEAGYVGE 153 Query: 95 DLAALLTNL---EDRDV-------LFIDEIHRLS 118 D+ ++ NL D DV ++IDEI +++ Sbjct: 154 DVENIILNLVQMADYDVESACKGIVYIDEIDKIA 187 >gi|301117286|ref|XP_002906371.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262107720|gb|EEY65772.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 2023 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 23/33 (69%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89 + VGPPG GKT LAQV+AR LG+ + S G + Sbjct: 315 IAVVGPPGSGKTRLAQVLARRLGLKYLSLDGAI 347 >gi|260592723|ref|ZP_05858181.1| putative methanol dehydrogenase regulatory protein [Prevotella veroralis F0319] gi|260535254|gb|EEX17871.1| putative methanol dehydrogenase regulatory protein [Prevotella veroralis F0319] Length = 340 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 24/176 (13%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDRDVLF---- 110 HVL G PG+ KT LA++V+R + F R P + + L + N++ + F Sbjct: 64 HVLIEGVPGVAKTLLARLVSRLIDARFSRIQFTPDLMPSDVLGTTVFNMKTSEFDFHQGP 123 Query: 111 -------IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 +DEI+R + L+ ME+ Q+ + +G S R + +T+IA V Sbjct: 124 VFAEMVLVDEINRAPAKTQAALFEVMEERQVTI---DGVSHRMNDL----YTIIATQNPV 176 Query: 164 GL-----LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214 L DRF IR+++ +E+ +I+Q + L D+ +++R Sbjct: 177 EQEGTYRLPEAQLDRFLFKIRMSYPTLEEEVSILQHHQENRKLVKLDDIQPLLSVR 232 >gi|226469390|emb|CAX70174.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum] Length = 395 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRS--TSGPVIAKAGDLAALLTNLED--RD----V 108 L GPPG GKT LA+ VA +L VNF +SG V G+ A L+ + RD + Sbjct: 176 CLLYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFSYARDHQPCI 235 Query: 109 LFIDEI 114 +F+DEI Sbjct: 236 IFMDEI 241 >gi|254585551|ref|XP_002498343.1| ZYRO0G08008p [Zygosaccharomyces rouxii] gi|238941237|emb|CAR29410.1| ZYRO0G08008p [Zygosaccharomyces rouxii] Length = 826 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 553 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 584 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT++A +A EL V F S S P + +G+ + +L D + Sbjct: 229 VLLHGPPGCGKTSIANALAGELQVPFLSISAPSVVSGMSGESEKKIRDLFDEARSLAPCL 288 Query: 109 LFIDEIHRLS 118 +F DEI ++ Sbjct: 289 MFFDEIDAIT 298 >gi|296126216|ref|YP_003633468.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii DSM 12563] gi|296018032|gb|ADG71269.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii DSM 12563] Length = 520 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 103/255 (40%), Gaps = 49/255 (19%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T EE GQ + I A K A A LF G G+GKT+LA+++A+ L Sbjct: 13 RPQTFEEVIGQEHITKTISKSI-AQKKIAHAY---LFSGAHGVGKTSLARIIAKALNC-- 66 Query: 83 RSTSGPVIAKAGDLAALLTNLED---RDVLFID--------------EIHRLS------- 118 +GP G + T +E+ DV+ ID E R+S Sbjct: 67 --VNGPTDKPCG-VCPSCTQIENGTPLDVIEIDGASNRGIENIRSIIENVRISPVAGKYK 123 Query: 119 -IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 I++E+ E F L E P A V I ATT + ++ R Sbjct: 124 VYIIDEVHQITNEAFNALLKTLEEPPAHVV--------FILATTEADRVLPTIRSRCQ-- 173 Query: 178 IRLNFYE--IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235 + F IEDL+ I++ + +EA IA ++RG+ R + +L ++ A Sbjct: 174 -QYTFKSLGIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKM--IAYT 230 Query: 236 AHAKTITREIADAAL 250 K IT +A + Sbjct: 231 TDKKYITSADVNAVV 245 >gi|222424645|dbj|BAH20277.1| AT2G30950 [Arabidopsis thaliana] Length = 695 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 263 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 293 >gi|194595679|gb|ACF77122.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum brasilense] Length = 422 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 110 AKSNILLVGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189 >gi|189501688|ref|YP_001957405.1| hypothetical protein Aasi_0232 [Candidatus Amoebophilus asiaticus 5a2] gi|189497129|gb|ACE05676.1| hypothetical protein Aasi_0232 [Candidatus Amoebophilus asiaticus 5a2] Length = 691 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVL 109 L +GPPG GKT LA+ VA E GV F S SG V A + L +++ ++ Sbjct: 229 LLIGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFKQAKEKAPAII 288 Query: 110 FIDEI 114 FIDEI Sbjct: 289 FIDEI 293 >gi|152993533|ref|YP_001359254.1| cell division protein FtsH [Sulfurovum sp. NBC37-1] gi|310946765|sp|A6QBN8|FTSH_SULNB RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|151425394|dbj|BAF72897.1| cell division protein FtsH [Sulfurovum sp. NBC37-1] Length = 671 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 10/67 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107 VL VGPPG GKT LA+ VA E V F S SG ++ DL A E Sbjct: 220 VLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSGFIEMFVGVGASRVRDLFAQAKK-EAPS 278 Query: 108 VLFIDEI 114 ++FIDEI Sbjct: 279 IIFIDEI 285 >gi|126178633|ref|YP_001046598.1| ATPase [Methanoculleus marisnigri JR1] gi|125861427|gb|ABN56616.1| ATPase associated with various cellular activities, AAA_3 [Methanoculleus marisnigri JR1] Length = 325 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 12/90 (13%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDR-------- 106 HVL G PG KTT+ ++VA+ +G +F G V + D+ + + + E + Sbjct: 48 HVLVEGLPGTAKTTIGKIVAKLMGYDFSRVQGAVDVQPADIIGIRIYDPEQKAFILRKGP 107 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQ 133 + + IDEI+RL+ + AM + Q Sbjct: 108 IFHNFIMIDEINRLTPKTQSAFLEAMSERQ 137 >gi|73541075|ref|YP_295595.1| ATP-dependent protease ATP-binding subunit [Ralstonia eutropha JMP134] gi|123760219|sp|Q472D2|CLPX_RALEJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|72118488|gb|AAZ60751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ralstonia eutropha JMP134] Length = 425 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 EKAQRGIVYIDEIDKIS 193 >gi|15220118|ref|NP_178151.1| ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|60390221|sp|Q9SEX2|KTNA1_ARATH RecName: Full=Katanin p60 ATPase-containing subunit; Short=Katanin p60 subunit; AltName: Full=CAD ATPase; AltName: Full=Katanin-1; Short=Atp60; AltName: Full=Protein BOTERO 1; AltName: Full=Protein ECTOPIC ROOT HAIR 3; AltName: Full=Protein FAT ROOT; AltName: Full=Protein FRAGILE FIBER 2; Short=AtAAA1; AltName: Full=p60 katanin gi|6648606|gb|AAF21247.1|AF048706_1 CAD ATPase [Arabidopsis thaliana] gi|12324979|gb|AAG52435.1|AC018848_6 CAD ATPase (AAA1); 35570-33019 [Arabidopsis thaliana] gi|13958985|gb|AAK51051.1|AF358779_1 katanin [Arabidopsis thaliana] gi|14133602|gb|AAK54074.1|AF359248_1 katanin 1 [Arabidopsis thaliana] gi|16649099|gb|AAL24401.1| CAD ATPase (AAA1) [Arabidopsis thaliana] gi|23197882|gb|AAN15468.1| CAD ATPase (AAA1) [Arabidopsis thaliana] gi|110736965|dbj|BAF00438.1| CAD ATPase [Arabidopsis thaliana] gi|332198269|gb|AEE36390.1| Katanin p60 ATPase-containing subunit [Arabidopsis thaliana] Length = 523 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 275 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 334 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 335 IFIDEIDSL 343 >gi|58259205|ref|XP_567015.1| helicase [Cryptococcus neoformans var. neoformans JEC21] gi|134107345|ref|XP_777557.1| hypothetical protein CNBA6790 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260251|gb|EAL22910.1| hypothetical protein CNBA6790 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223152|gb|AAW41196.1| helicase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 756 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 22/37 (59%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +A VL GPPG GKT LA+ VA E NF S GP Sbjct: 439 DAPSGVLLWGPPGCGKTLLAKAVANESRANFISVKGP 475 >gi|325300152|ref|YP_004260069.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides salanitronis DSM 18170] gi|324319705|gb|ADY37596.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides salanitronis DSM 18170] Length = 414 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 29/127 (22%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR---AEALD-------HVLFVGPPGL 65 L +P+ ++EF GQ A L V + R E+ D +++ VG G Sbjct: 64 LPKPKDIKEFLDQYVIGQDSAKRYLSVAVYNHYKRLLQPESKDDVEIEKSNIIMVGSTGT 123 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NLE--DRDVLFI 111 GKT LA+ +A+ L V F V+ +AG D+ ++LT N+E +R ++FI Sbjct: 124 GKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVEEAERGIVFI 183 Query: 112 DEIHRLS 118 DEI +++ Sbjct: 184 DEIDKIA 190 >gi|320105914|ref|YP_004181504.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4] gi|319924435|gb|ADV81510.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4] Length = 639 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEAL-------DHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA LK IE + A+ VL VGPPG GKT LA+ VA E Sbjct: 154 TFKDVAGVDEAKEELKEIIEFLRESAKFQRLGGRIPKGVLLVGPPGTGKTLLARAVAGEA 213 Query: 79 GVNFRSTSG 87 V F S SG Sbjct: 214 NVPFFSISG 222 >gi|315058448|gb|ADT72777.1| Cell division protein FtsH [Campylobacter jejuni subsp. jejuni S3] Length = 538 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218 >gi|302347883|ref|YP_003815521.1| MoxR-like ATPase [Acidilobus saccharovorans 345-15] gi|302328295|gb|ADL18490.1| MoxR-like ATPase [Acidilobus saccharovorans 345-15] Length = 307 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 16/28 (57%), Positives = 23/28 (82%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFR 83 HVL GPPG+GKTTLA+++A+ +G F+ Sbjct: 40 HVLLEGPPGVGKTTLAKLLAQAMGGQFK 67 >gi|296329571|ref|ZP_06872057.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672768|ref|YP_003864439.1| cell division protein and general stress protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296153314|gb|EFG94177.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411011|gb|ADM36129.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. spizizenii str. W23] Length = 637 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ A E GV F S SG V A + L N + + Sbjct: 197 VLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCL 256 Query: 109 LFIDEI 114 +FIDEI Sbjct: 257 IFIDEI 262 >gi|296270439|ref|YP_003653071.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermobispora bispora DSM 43833] gi|296093226|gb|ADG89178.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermobispora bispora DSM 43833] Length = 427 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 31/130 (23%) Query: 20 SLLRPRTLEEF-----TGQVEACSNLKVFI--------EAAKARAEALD----HVLFVGP 62 +L +PR + EF GQ +A L V + +AR + L+ ++L +GP Sbjct: 60 NLPKPREIYEFLDSYVVGQDKAKKALSVAVYNHYKRIQSGNRARDDGLELAKSNILLLGP 119 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV------- 108 G GKT LAQ +A+ L V F + +AG D+ +L L D DV Sbjct: 120 TGSGKTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGI 179 Query: 109 LFIDEIHRLS 118 ++IDE+ +++ Sbjct: 180 IYIDEVDKIA 189 >gi|257899973|ref|ZP_05679626.1| peptidase M41 [Enterococcus faecium Com15] gi|293571078|ref|ZP_06682119.1| Cell division protease FtsH [Enterococcus faecium E980] gi|257837885|gb|EEV62959.1| peptidase M41 [Enterococcus faecium Com15] gi|291608861|gb|EFF38142.1| Cell division protease FtsH [Enterococcus faecium E980] Length = 703 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254 >gi|212697413|ref|ZP_03305541.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM 7454] gi|212675605|gb|EEB35212.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM 7454] Length = 677 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 VFIDEI 274 >gi|190406014|gb|EDV09281.1| ribosome biogenesis ATPase RIX7 [Saccharomyces cerevisiae RM11-1a] gi|259147956|emb|CAY81205.1| Rix7p [Saccharomyces cerevisiae EC1118] gi|323303931|gb|EGA57711.1| Rix7p [Saccharomyces cerevisiae FostersB] Length = 837 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 570 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 601 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT++A +A EL V F S S P + +G+ + +L D + Sbjct: 242 VLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPCL 301 Query: 109 LFIDEIHRLS 118 +F DEI ++ Sbjct: 302 VFFDEIDAIT 311 >gi|218441183|ref|YP_002379512.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] gi|218173911|gb|ACK72644.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] Length = 667 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/30 (66%), Positives = 21/30 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 VL VGPPG GKT LA+ VA E GV F S S Sbjct: 239 VLLVGPPGTGKTLLAKAVAGEAGVTFFSIS 268 >gi|170098422|ref|XP_001880430.1| predicted protein [Laccaria bicolor S238N-H82] gi|164644868|gb|EDR09117.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1040 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L G PG GKT LA VA+E G+NF S GP I Sbjct: 728 LLLYGFPGCGKTLLASAVAKECGLNFISVKGPEI 761 >gi|151941136|gb|EDN59514.1| ribosome export [Saccharomyces cerevisiae YJM789] Length = 837 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 570 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 601 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT++A +A EL V F S S P + +G+ + +L D + Sbjct: 242 VLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPCL 301 Query: 109 LFIDEIHRLS 118 +F DEI ++ Sbjct: 302 VFFDEIDAIT 311 >gi|159037462|ref|YP_001536715.1| shikimate kinase [Salinispora arenicola CNS-205] gi|229541092|sp|A8LY07|AROK_SALAI RecName: Full=Shikimate kinase; Short=SK gi|157916297|gb|ABV97724.1| Shikimate kinase [Salinispora arenicola CNS-205] Length = 167 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 24/38 (63%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 + VGPPG GKTT+ Q +A LGV FR T V A AG Sbjct: 5 CVLVGPPGSGKTTVGQALAELLGVEFRDTDLDVEATAG 42 >gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group] gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group] gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa Japonica Group] gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group] gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group] gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group] gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group] Length = 339 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPR +++ Q E L ++ A L H+LF GPPG GKTT A +A +L Sbjct: 16 RPRQVKDVAHQEEVVRVLTTTLQTAD-----LPHMLFYGPPGTGKTTTALAIAYQL 66 >gi|16077137|ref|NP_387950.1| cell-division protein and general stress protein [Bacillus subtilis subsp. subtilis str. 168] gi|221307879|ref|ZP_03589726.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. subtilis str. 168] gi|221312201|ref|ZP_03594006.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317134|ref|ZP_03598428.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. subtilis str. JH642] gi|221321397|ref|ZP_03602691.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. subtilis str. SMY] gi|321313739|ref|YP_004206026.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis BSn5] gi|585159|sp|P37476|FTSH_BACSU RecName: Full=ATP-dependent zinc metalloprotease FtsH; AltName: Full=Cell division protease FtsH gi|467458|dbj|BAA05304.1| cell division protein [Bacillus subtilis] gi|2632336|emb|CAB11845.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. subtilis str. 168] gi|291482441|dbj|BAI83516.1| cell division protease FtsH [Bacillus subtilis subsp. natto BEST195] gi|320020013|gb|ADV94999.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis BSn5] Length = 637 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ A E GV F S SG V A + L N + + Sbjct: 197 VLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCL 256 Query: 109 LFIDEI 114 +FIDEI Sbjct: 257 IFIDEI 262 >gi|86150472|ref|ZP_01068697.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596784|ref|ZP_01100021.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|218562621|ref|YP_002344400.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839067|gb|EAQ56331.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191625|gb|EAQ95597.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|112360327|emb|CAL35123.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315928364|gb|EFV07679.1| metalloprotease [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 538 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218 >gi|332298399|ref|YP_004440321.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM 12168] gi|332181502|gb|AEE17190.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM 12168] Length = 616 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 17/95 (17%) Query: 10 RNVSQEDADISLLRPR----------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56 +N SQ + R R T + GQ EA + L I+ K + LD Sbjct: 140 QNASQSAKGMQFGRSRARVYSGGKKITFADVAGQEEAKNELSDVIDFLKNPQKYLDMGAK 199 Query: 57 ----VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VG PG GKT LA+ VA E GV F SG Sbjct: 200 IPTGILLVGNPGTGKTLLARAVAGEAGVAFLHISG 234 >gi|330897699|gb|EGH29118.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. japonica str. M301072PT] Length = 232 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPR+ E GQ LK I A + + L H LF G G+GKTT+A+++A+ L Sbjct: 11 RPRSFREMVGQAHV---LKALINALDS--QRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65 Query: 82 FRSTSGPV 89 TS P Sbjct: 66 TGITSTPC 73 >gi|307942385|ref|ZP_07657736.1| AAA ATPase, central region [Roseibium sp. TrichSKD4] gi|307774671|gb|EFO33881.1| AAA ATPase, central region [Roseibium sp. TrichSKD4] Length = 369 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 V NL +EA E VLF GPPG+GKT A+ VARELGV Sbjct: 106 VNERQNLGALLEAG---LEPTRTVLFTGPPGVGKTLGARWVARELGV 149 >gi|304313998|ref|YP_003849145.1| cell division protein 48 [Methanothermobacter marburgensis str. Marburg] gi|302587457|gb|ADL57832.1| predicted cell division protein 48 [Methanothermobacter marburgensis str. Marburg] Length = 729 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ IE R E + VL GPPG GKT LA+ VA E Sbjct: 200 TYEDIGGLKEEVKKVREMIEIPLKRPELFERLGITPPKGVLMHGPPGTGKTLLAKAVANE 259 Query: 78 LGVNFRSTSGPVI 90 +F + +GP I Sbjct: 260 SDAHFIAINGPEI 272 >gi|296417934|ref|XP_002838602.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634552|emb|CAZ82793.1| unnamed protein product [Tuber melanosporum] Length = 747 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----V 108 VL GPPG GKT LA VA E+G+ F + S P I +G+ L L E R+ + Sbjct: 219 VLLHGPPGCGKTMLANAVAGEIGLPFIAISAPSIVSGMSGESEKKLRELFEEAREKAPCL 278 Query: 109 LFIDEIHRLS 118 +F+DEI ++ Sbjct: 279 IFMDEIDAIT 288 Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 500 VLLWGPPGCGKTLLAKAVANESRANFISIRGP 531 >gi|258593674|emb|CBE70015.1| DNA polymerase III, subunits gamma and tau [NC10 bacterium 'Dutch sediment'] Length = 601 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP+ +E GQ LK I AK R A AL LF GP G+GKTT A+++A+ L Sbjct: 11 RPQNFDEVVGQRPVTQTLKNAI--AKDRVAHAL---LFAGPRGVGKTTTARILAKALNCE 65 Query: 82 FRSTSGPV 89 TS P Sbjct: 66 RGRTSEPC 73 >gi|295699009|ref|YP_003606902.1| ATPase AAA [Burkholderia sp. CCGE1002] gi|295438222|gb|ADG17391.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002] Length = 632 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 23/35 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 +L VG PG+GKT LAQ +A E G NF S +G + Sbjct: 224 ILMVGAPGVGKTRLAQALAGECGANFISITGSYFS 258 >gi|302419019|ref|XP_003007340.1| cell division protease ftsH [Verticillium albo-atrum VaMs.102] gi|261352991|gb|EEY15419.1| cell division protease ftsH [Verticillium albo-atrum VaMs.102] Length = 718 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E GV F SG V A + L T+ + + + Sbjct: 279 ILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRDLFTSAKSKSPAI 338 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 339 IFIDEL 344 >gi|256271958|gb|EEU06977.1| Rix7p [Saccharomyces cerevisiae JAY291] Length = 837 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 570 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 601 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT++A +A EL V F S S P + +G+ + +L D + Sbjct: 242 VLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPCL 301 Query: 109 LFIDEIHRLS 118 +F DEI ++ Sbjct: 302 VFFDEIDAIT 311 >gi|227552663|ref|ZP_03982712.1| M41 family endopeptidase FtsH [Enterococcus faecium TX1330] gi|257888631|ref|ZP_05668284.1| peptidase M41 [Enterococcus faecium 1,141,733] gi|257897414|ref|ZP_05677067.1| peptidase M41 [Enterococcus faecium Com12] gi|293378828|ref|ZP_06624983.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium PC4.1] gi|227178192|gb|EEI59164.1| M41 family endopeptidase FtsH [Enterococcus faecium TX1330] gi|257824685|gb|EEV51617.1| peptidase M41 [Enterococcus faecium 1,141,733] gi|257833979|gb|EEV60400.1| peptidase M41 [Enterococcus faecium Com12] gi|292642369|gb|EFF60524.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium PC4.1] Length = 703 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254 >gi|224178038|ref|YP_002600953.1| cell division protein [Pyramimonas parkeae] gi|215882705|gb|ACJ71078.1| cell division protein [Pyramimonas parkeae] Length = 561 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLEDR------DV 108 LFVGPPG GKT LAQ +A GV +T S + + G L +L ++ + Sbjct: 71 FLFVGPPGTGKTLLAQAIAGTAGVTLYATVASEFIDGQKGIGCCRLRDLFEKAKKDSPSI 130 Query: 109 LFIDEIHRLS 118 +FIDEI L+ Sbjct: 131 IFIDEIDTLA 140 >gi|222445802|ref|ZP_03608317.1| hypothetical protein METSMIALI_01445 [Methanobrevibacter smithii DSM 2375] gi|222435367|gb|EEE42532.1| hypothetical protein METSMIALI_01445 [Methanobrevibacter smithii DSM 2375] Length = 740 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 24/124 (19%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 + E+ G + ++ IE R E D VL GPPG GKT LA+ VA E Sbjct: 211 SYEDIGGLKDEVKKVREMIEIPLKRPELFDKLGIAPPKGVLMHGPPGTGKTLLAKAVASE 270 Query: 78 LGVNFRSTSGPVIAK---AGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAM 129 +F + +GP I G L E+ + ++FIDE+ ++ P Sbjct: 271 SDAHFIAINGPEIMSKYVGGSEENLREYFEEAEENAPSIIFIDELDAIA--------PKR 322 Query: 130 EDFQ 133 ED Q Sbjct: 323 EDTQ 326 >gi|167630672|ref|YP_001681171.1| cell division cycle protein 48 [Heliobacterium modesticaldum Ice1] gi|167593412|gb|ABZ85160.1| cell division cycle protein 48 [Heliobacterium modesticaldum Ice1] Length = 580 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LAQ VA E+ F + GP Sbjct: 345 VLLYGPPGCGKTLLAQAVANEVEATFFAVKGP 376 >gi|146420643|ref|XP_001486276.1| hypothetical protein PGUG_01947 [Meyerozyma guilliermondii ATCC 6260] Length = 768 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG KT A+ +A ELG+NF + GP I Sbjct: 542 VLLYGPPGCSKTLTAKALATELGLNFLAVKGPEI 575 >gi|113867497|ref|YP_725986.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia eutropha H16] gi|123033070|sp|Q0KBK3|CLPX_RALEH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|113526273|emb|CAJ92618.1| ATP-dependent Clp protease ATP-binding subunit (ClpX) [Ralstonia eutropha H16] Length = 425 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 EKAQRGIVYIDEIDKIS 193 >gi|86152943|ref|ZP_01071148.1| atpase ec atp-dependent zn proteases [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612530|ref|YP_001000684.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|167005606|ref|ZP_02271364.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 81-176] gi|85843828|gb|EAQ61038.1| atpase ec atp-dependent zn proteases [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249291|gb|EAQ72252.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni 81-176] Length = 538 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218 >gi|325185486|emb|CCA19969.1| ribosome biogenesis ATPase RIX7 putative [Albugo laibachii Nc14] Length = 770 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E NF S GP Sbjct: 507 VLLYGPPGCGKTLLAKAIANESEANFISIKGP 538 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 32/77 (41%), Gaps = 9/77 (11%) Query: 23 RPRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQV 73 RPRT +F G +K IE E H +L GPPG GKT LA Sbjct: 153 RPRTRYSDFGGIHSILQEVKELIEYPLTHPEVYVHLGVEPPRGILLHGPPGTGKTMLANS 212 Query: 74 VARELGVNFRSTSGPVI 90 +A E G F S P I Sbjct: 213 IAGESGAAFIRISAPEI 229 >gi|311063897|ref|YP_003970622.1| AAA family ATPase [Bifidobacterium bifidum PRL2010] gi|310866216|gb|ADP35585.1| AAA family ATPase [Bifidobacterium bifidum PRL2010] Length = 402 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 20/118 (16%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIE-----AAKARA---EALDHVLFVGPPGLGKT 68 AD SL T F G + K IE +A+ RA + + V+F G PG GKT Sbjct: 146 ADSSL----TFAAFGGYERVIARAKELIETQLGNSAQMRAIGAKPIKGVIFTGAPGTGKT 201 Query: 69 TLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDVLFIDEIHRLS 118 LA+++A F SGP I GD L + R ++F DEI ++ Sbjct: 202 HLARIIANVADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQSDKRAIIFFDEIDSIA 259 >gi|297297857|ref|XP_001099493.2| PREDICTED: 26S protease regulatory subunit S10B-like, partial [Macaca mulatta] Length = 352 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED ++S E G E L+ IE E V L Sbjct: 132 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 185 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 245 Query: 111 IDEI 114 +DEI Sbjct: 246 MDEI 249 >gi|269101027|ref|YP_003289175.1| Probable chloroplast ATP-dependent protease [Ectocarpus siliculosus] gi|310943129|sp|D1J722|FTSH_ECTSI RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|266631535|emb|CAV31206.1| Probable chloroplast ATP-dependent protease [Ectocarpus siliculosus] gi|270118665|emb|CAT18723.1| Probable chloroplast ATP-dependent protease [Ectocarpus siliculosus] Length = 661 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 19/116 (16%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLG 66 Q DAD +L + G EA + F+ K A V+ VGPPG G Sbjct: 185 QLDADTGVL----FSDVAGIDEAKQEFEEFVSFLKMPQLFTAVGANPPKGVIIVGPPGTG 240 Query: 67 KTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 KT LA+ +A E GV F S SG + A + L E +LFIDEI Sbjct: 241 KTLLAKAIAGEAGVPFISISGSEFVEMFVGIGASRVRDLFETAERNSPCILFIDEI 296 >gi|300780435|ref|ZP_07090291.1| cell division protein FtsH [Corynebacterium genitalium ATCC 33030] gi|300534545|gb|EFK55604.1| cell division protein FtsH [Corynebacterium genitalium ATCC 33030] Length = 865 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 202 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 232 >gi|255714923|ref|XP_002553743.1| KLTH0E06006p [Lachancea thermotolerans] gi|238935125|emb|CAR23306.1| KLTH0E06006p [Lachancea thermotolerans] Length = 819 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 559 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 590 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT++A +A EL V F S S P + Sbjct: 239 VLLHGPPGCGKTSIANALAGELQVPFISISAPSV 272 >gi|296005011|ref|XP_001349382.2| ATPase, putative [Plasmodium falciparum 3D7] gi|225632241|emb|CAD51231.2| ATPase, putative [Plasmodium falciparum 3D7] Length = 1200 Score = 40.0 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ ++ E+ NF + GP I Sbjct: 713 ILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEI 746 >gi|224536929|ref|ZP_03677468.1| hypothetical protein BACCELL_01805 [Bacteroides cellulosilyticus DSM 14838] gi|224521456|gb|EEF90561.1| hypothetical protein BACCELL_01805 [Bacteroides cellulosilyticus DSM 14838] Length = 1113 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 84/217 (38%), Gaps = 46/217 (21%) Query: 43 FIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVA------------RELGVNF 82 +I+ +A+AEA+ DH LFVG PG GKTT+A+++ R L V Sbjct: 874 YIKVERAKAEAMGKKFQGVVDHYLFVGNPGTGKTTVARIMGNIFYSLGVLPSNRLLEVTR 933 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL-----SIIVEEILYPAMEDFQLDLM 137 + + + A + V FIDE + L + P + D++ ++ Sbjct: 934 KDLVEGYVGQTATKTARVVKRAVGGVFFIDEAYSLMGDNFGQEATNTILPMLLDYKGKMV 993 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGA 196 R + R + TN L+ RF I Y ++L I + Sbjct: 994 CIAAGYPREI--------------RQWIDTNSGLESRFTKVIHFEDYNPDELAQIFRMKV 1039 Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 K L +T EA E AMR T RR R+FA Sbjct: 1040 KKDKLTLTPEA--ENAMRVYFTDLYN----RRERNFA 1070 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 108/273 (39%), Gaps = 65/273 (23%) Query: 27 LEEFTGQVEACSNLKVFI---------EAAKARAEALDHVLFVGPPGLGKTTLAQVVA-- 75 L+EF G E + ++ I + A A+ E DH LF+G PG GKTT+A++ A Sbjct: 296 LDEFVGIDEIKATVQKIINKIDFERERKGAGAKREVKDHFLFLGNPGTGKTTIARIFADI 355 Query: 76 -----------------RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118 +EL + + + K D+A VLFIDE + L Sbjct: 356 LNSLEVLPIGQLVEVSRKELVAGYVGQTALAVEKYVDMAM-------GGVLFIDEAYTLK 408 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA--TTRVG--LLTNP-LQDR 173 + D L L V+ +F IAA T +G L +N + R Sbjct: 409 QGDNDQFGQEAIDTLLKL----------VEDRRGQFVAIAAGYTKEMGEFLSSNSGMASR 458 Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 F + Y+ ++L I +R K L + +EA E +R+ + L R R+F Sbjct: 459 FNETVTFRDYKADELTEIFRRQVKKEHLTLDEEA--EAFIRN----YFSKMYLTRTRNFG 512 Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266 RE+ +A + AI G L+L+ Sbjct: 513 NA-------REVRNA--MDRAIKNQGVRLLELK 536 >gi|255569991|ref|XP_002525958.1| Cell division protease ftsH, putative [Ricinus communis] gi|223534690|gb|EEF36382.1| Cell division protease ftsH, putative [Ricinus communis] Length = 636 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 8/89 (8%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 +E S ++ I K A+ VL VGPPG GKT LA+ VA E GV F S S + Sbjct: 361 MEIVSCMQGAINYQKLGAKIPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL 420 Query: 93 -AGDLAALLTNL------EDRDVLFIDEI 114 G AA + +L ++FIDE+ Sbjct: 421 FVGRGAARIRDLFKVARKSAPSIIFIDEL 449 >gi|224123964|ref|XP_002330253.1| predicted protein [Populus trichocarpa] gi|222871709|gb|EEF08840.1| predicted protein [Populus trichocarpa] Length = 950 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 34/191 (17%) Query: 13 SQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVLFV-GPPGLGKTT 69 S D + +LR + + E+ G + + FI K R + ++ + GPPG+GKT+ Sbjct: 428 SYSDENFDVLRAQKILDEDHYGLADVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTS 487 Query: 70 LAQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDE 113 + + +AR L FR + G + A G + L N+ + ++ IDE Sbjct: 488 IGRSIARSLNRKFFRFSVGGLSDVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDE 547 Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 I +L + + E+L P LD + V I+LS+ + V + Sbjct: 548 IDKLGRGHAGDPASALLELLDPEQNANFLDHYL-------DVPIDLSKVLFVCTANVVDM 600 Query: 166 LTNPLQDRFGI 176 + NPL DR + Sbjct: 601 IPNPLLDRMEV 611 >gi|171186450|ref|YP_001795369.1| replication factor C large subunit [Thermoproteus neutrophilus V24Sta] gi|226739140|sp|B1YC69|RFCL_THENV RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|170935662|gb|ACB40923.1| AAA ATPase central domain protein [Thermoproteus neutrophilus V24Sta] Length = 422 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63 R S V+QE+A +LL F E C+ E A A+A VL GPP Sbjct: 10 RPKAFSEIVNQEEAK-TLLASWICARFRAPKEFCARWAKKREKEVAEAKA---VLLAGPP 65 Query: 64 GLGKTTLAQVVAREL 78 G+GKTT+ +ARE+ Sbjct: 66 GIGKTTVVHALAREI 80 >gi|147920445|ref|YP_685764.1| cell division cycle protein 48 [uncultured methanogenic archaeon RC-I] gi|110621160|emb|CAJ36438.1| cell division cycle protein 48 [uncultured methanogenic archaeon RC-I] Length = 758 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G +A ++ IE E + VL +GPPG GKT LA+ VA E Sbjct: 208 TYEDLGGIRDAIQKIREMIELPLKYPELFNRLGIDPPKGVLILGPPGTGKTLLAKAVANE 267 Query: 78 LGVNFRSTSGPVI 90 F S +GP I Sbjct: 268 SDAYFTSINGPEI 280 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 6/45 (13%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL 96 EA VL GPPG GKT LA+ +A E NF + AK DL Sbjct: 515 EAPKGVLLYGPPGTGKTLLAKAIANESQANF------ITAKGSDL 553 >gi|49246399|gb|AAT58331.1| FtsH-like protein [Aegilops tauschii] gi|49246407|gb|AAT58335.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246421|gb|AAT58342.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246457|gb|AAT58360.1| FtsH-like protein [Triticum urartu] Length = 151 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 56 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 86 >gi|86143111|ref|ZP_01061533.1| putative DNA polymerase III [Leeuwenhoekiella blandensis MED217] gi|85830556|gb|EAQ49015.1| putative DNA polymerase III [Leeuwenhoekiella blandensis MED217] Length = 391 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 21/220 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP T ++ GQ +A +N +E A A +LF GP G+GKTT A+++A+++ Sbjct: 40 RPATFKDVVGQ-QAITNT---LENAIANNHLAQALLFTGPRGVGKTTCARILAKKIN--- 92 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI-LYPAMEDFQLDLMVGEG 141 + V+ + D A + L+ +D+I L ++++ + P + ++++ ++ E Sbjct: 93 -QEADEVVDENEDYAFNIFELDAASNNSVDDIRNL---IDQVRIAPQVGNYKV-YIIDEV 147 Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG------ 195 S N TL + + +P L+ +I D K I + Sbjct: 148 HMLSSAAFNAFLKTLEEPPKHAIFILATTEKHKILPTILSRCQIFDFKRITVKDIREHLV 207 Query: 196 --AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 AK G+ +EA IA ++ G R A RV F+ Sbjct: 208 DIAKQEGITADEEALHIIAQKADGALRDALSTFDRVVSFS 247 >gi|226943511|ref|YP_002798584.1| ATP-dependent protease La [Azotobacter vinelandii DJ] gi|226718438|gb|ACO77609.1| ATP-dependent protease La [Azotobacter vinelandii DJ] Length = 800 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 VL VGPPG+GKT++ + +A LG F R + G + +A G L L Sbjct: 377 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 436 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 ++E + V+ +DEI +L + + E L P A D LDL + Sbjct: 437 DVEVMNPVIMLDEIDKLGASHHGDPASALLETLDPEQNAAFLDHYLDL-----------R 485 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++LS+ + + + PL DR + IRL+ Y E+ I +R Sbjct: 486 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYIAEEKFAIAKR 530 >gi|332020666|gb|EGI61072.1| Katanin p60 ATPase-containing subunit A-like 2 [Acromyrmex echinatior] Length = 496 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GD---LAALLTNLEDR---DV 108 VL GPPG GKT LA+ VA + F + TS VI+K GD +LT+L + Sbjct: 254 VLLYGPPGTGKTMLAKAVATKCQSTFFNITSSSVISKWRGDSEKYIRVLTDLAKHYAPTI 313 Query: 109 LFIDEI 114 +FIDEI Sbjct: 314 IFIDEI 319 >gi|332188786|ref|ZP_08390497.1| AAA ATPase, CDC48 subfamily protein [Sphingomonas sp. S17] gi|332011185|gb|EGI53279.1| AAA ATPase, CDC48 subfamily protein [Sphingomonas sp. S17] Length = 763 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 8/68 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRST-SGPVIAK-AGDLAALLTNLEDR------DVL 109 L GPPG GKT LA+ VARE NF +T S +++K G+ +T L R V+ Sbjct: 514 LLYGPPGTGKTLLAKAVAREAEANFIATKSSDLLSKWYGESEQQITRLFQRARQVAPTVI 573 Query: 110 FIDEIHRL 117 FIDE+ L Sbjct: 574 FIDELDSL 581 >gi|298708269|emb|CBJ48332.1| similar to CTF18, chromosome transmission fidelity factor 18 homolog isoform 3 [Ectocarpus siliculosus] Length = 1130 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116 ++ GPPGLGKTTLAQVVA+ G + A L +T + + L D+ Sbjct: 402 IMLCGPPGLGKTTLAQVVAKHAGYRVYEINASDDRTASVLRQRMTEAMEGNTLLADKRPN 461 Query: 117 LSIIVEEI 124 L I+++E+ Sbjct: 462 L-IVLDEV 468 >gi|291521148|emb|CBK79441.1| ATP-dependent metalloprotease FtsH [Coprococcus catus GD/7] Length = 604 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 202 ILLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 261 Query: 109 LFIDEI 114 +FIDEI Sbjct: 262 VFIDEI 267 >gi|289641546|ref|ZP_06473708.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia symbiont of Datisca glomerata] gi|289508641|gb|EFD29578.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia symbiont of Datisca glomerata] Length = 430 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 33/131 (25%) Query: 21 LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE--------------ALDHVLFVG 61 L +PR + EF GQ +A L V + R + A ++L +G Sbjct: 61 LPKPREIYEFLDSYVVGQEQAKKILSVAVYNHYKRVQAGGAGGDAKGDVELAKSNILLLG 120 Query: 62 PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV------ 108 P G GKT LAQ +AR L V F + +AG D+ +L L D DV Sbjct: 121 PTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 180 Query: 109 -LFIDEIHRLS 118 ++IDE+ +++ Sbjct: 181 IIYIDEVDKIA 191 >gi|288555053|ref|YP_003426988.1| PAS modulated sigma54 specific transcriptional regulator, Fis family protein [Bacillus pseudofirmus OF4] gi|288546213|gb|ADC50096.1| PAS modulated sigma54 specific transcriptional regulator, Fis family protein [Bacillus pseudofirmus OF4] Length = 455 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 33/168 (19%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +I +LR + ++ TG V +K + AK AE +VL +G G+GKT LA+++ RE Sbjct: 135 EIEVLRNQQMKN-TGFVGNSYEMKKCLSVAKQVAEVDVNVLILGESGVGKTHLAKLIHRE 193 Query: 78 LG--------VN---------------FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 G VN + + S K G L L L + LF+DEI Sbjct: 194 SGRCNKPFIEVNCGAIPESLFESEFFGYEAGSFTSANKKGKLG--LAELAEGGTLFLDEI 251 Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 LS+ ++ + +++ Q + G P R+V F LIAAT + Sbjct: 252 GELSLPLQVKVLRFIQEKQFYRVGGTKP--RTVD-----FRLIAATNQ 292 >gi|302916499|ref|XP_003052060.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732999|gb|EEU46347.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 389 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TLE+ +G + + + F++ + L H+L GPPG GKT+ +AR + Sbjct: 50 RPNTLEDVSGHHDILATINKFVDTNR-----LPHLLLYGPPGTGKTSTILALARRI 100 >gi|296808249|ref|XP_002844463.1| DNA helicase [Arthroderma otae CBS 113480] gi|238843946|gb|EEQ33608.1| DNA helicase [Arthroderma otae CBS 113480] Length = 458 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 F GQV A V ++ K+R A VL G PG GKT LA V++ELG Sbjct: 40 FVGQVPAREACGVIVDLIKSRKMAGRAVLLAGGPGTGKTALALAVSQELG 89 >gi|227903174|ref|ZP_04020979.1| M41 family endopeptidase FtsH [Lactobacillus acidophilus ATCC 4796] gi|227868979|gb|EEJ76400.1| M41 family endopeptidase FtsH [Lactobacillus acidophilus ATCC 4796] Length = 718 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E V F S SG V A + L +N + + Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFSNAKKNAPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|227547907|ref|ZP_03977956.1| cell division protein FtsH [Corynebacterium lipophiloflavum DSM 44291] gi|227080012|gb|EEI17975.1| cell division protein FtsH [Corynebacterium lipophiloflavum DSM 44291] Length = 805 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 202 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 232 >gi|227824800|ref|ZP_03989632.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21] gi|226905299|gb|EEH91217.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21] Length = 625 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVARE 77 +T ++ GQ EA L+ + +R +A+ VL VGPPG GKT LA+ VA E Sbjct: 164 KTFKDVAGQDEAKEALQEIVSFLHDPSRYQAIGATMPKGVLLVGPPGTGKTLLAKAVAGE 223 Query: 78 LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 V F S SG V A + L +++ ++FIDEI Sbjct: 224 AKVPFFSISGSEFIEMFVGMGAARVRDLFKQAQEKAPCIVFIDEI 268 >gi|224031823|gb|ACN34987.1| unknown [Zea mays] Length = 391 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 19/137 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELG---VNFRSTS--GPVIAKAGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ +ARE G +N R ++ A L A + +L + + Sbjct: 123 VLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAI 182 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLLT 167 +FIDE+ + AM + + + M + +G + +R ++AAT R L Sbjct: 183 IFIDEVDSFLGQRRTTDHEAMTNMKTEFMSLWDGFTTDQN----ARVMVLAATNRPSELD 238 Query: 168 NPLQDRF------GIPI 178 + RF GIP+ Sbjct: 239 EAILRRFTQIFEIGIPV 255 >gi|254441332|ref|ZP_05054825.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter antarcticus 307] gi|198251410|gb|EDY75725.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter antarcticus 307] Length = 773 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 20/80 (25%) Query: 58 LFVGPPGLGKTTLAQVVAREL----------GVNFRSTS-GPVIAKA---GD----LAAL 99 L VG PG+GKT +A+ +AR++ G S G ++A GD L A+ Sbjct: 221 LLVGDPGVGKTAIAEGLARKIIESKVPEVLAGTTIYSLDMGALLAGTRYRGDFEERLKAV 280 Query: 100 LTNLEDRD--VLFIDEIHRL 117 +T LED D VLFIDEIH + Sbjct: 281 MTELEDHDDAVLFIDEIHTI 300 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 23/163 (14%) Query: 10 RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64 +NVS++DA++ +L+ GQ +A L I+ A+A + + + LF GP G Sbjct: 449 KNVSKDDAEVLKDLESSLKRVVFGQDDAIVALSSAIKLARAGLREPEKPIGNYLFAGPTG 508 Query: 65 LGKTTLAQVVARELGVNF-----------RSTSGPVIAKAG----DLAALLTNLEDRD-- 107 +GKT +A+ +A LGV S S + A G D +LT+ D++ Sbjct: 509 VGKTEVAKQLADTLGVELLRFDMSEYMEKHSISRLIGAPPGYVGFDQGGMLTDGVDQNPH 568 Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149 VL +DE+ + V IL M++ +L G R+V I Sbjct: 569 CVLLLDEMEKAHPDVYNILLQVMDNGKLTDHNGRTTDFRNVII 611 >gi|194289505|ref|YP_002005412.1| ATP-dependent protease ATP-binding subunit clpx [Cupriavidus taiwanensis LMG 19424] gi|238692761|sp|B3R4W2|CLPX_CUPTR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|193223340|emb|CAQ69345.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Cupriavidus taiwanensis LMG 19424] Length = 425 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 EKAQRGIVYIDEIDKIS 193 >gi|184200756|ref|YP_001854963.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kocuria rhizophila DC2201] gi|238689204|sp|B2GGB7|CLPX_KOCRD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|183580986|dbj|BAG29457.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kocuria rhizophila DC2201] Length = 431 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 20/89 (22%) Query: 44 IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAAL 99 IE AK+ ++L VGP G GKT LAQ +A++L V F + +AG D+ + Sbjct: 117 IEVAKS------NILLVGPTGSGKTYLAQSLAKKLDVPFAVADATSLTEAGYVGEDVENI 170 Query: 100 LTNL----------EDRDVLFIDEIHRLS 118 L L ++ +++IDEI ++S Sbjct: 171 LLKLIQAADFDLKKAEQGIIYIDEIDKIS 199 >gi|167766201|ref|ZP_02438254.1| hypothetical protein CLOSS21_00695 [Clostridium sp. SS2/1] gi|167712281|gb|EDS22860.1| hypothetical protein CLOSS21_00695 [Clostridium sp. SS2/1] Length = 679 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/30 (66%), Positives = 21/30 (70%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ VA E GV F S SG Sbjct: 211 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSG 240 >gi|56755741|gb|AAW26049.1| SJCHGC06030 protein [Schistosoma japonicum] gi|226469386|emb|CAX70172.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum] gi|226469388|emb|CAX70173.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum] Length = 395 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRS--TSGPVIAKAGDLAALLTNLED--RD----V 108 L GPPG GKT LA+ VA +L VNF +SG V G+ A L+ + RD + Sbjct: 176 CLLYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFSYARDHQPCI 235 Query: 109 LFIDEI 114 +F+DEI Sbjct: 236 IFMDEI 241 >gi|63079330|gb|AAY29673.1| predicted ATP-dependent specificity component of the Clp protease [Bifidobacterium breve UCC2003] Length = 453 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G+GKT LAQ +AR + V F T + +AG D+ +L L D Sbjct: 139 AKSNILLLGPTGVGKTYLAQSLARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 198 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 199 GDVSRAQHGIIYIDEIDKIA 218 >gi|30684767|ref|NP_850156.1| VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] gi|75318709|sp|O80860|FTSH2_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 2, chloroplastic; Short=AtFTSH2; AltName: Full=Protein VARIEGATED 2; Flags: Precursor gi|7650138|gb|AAF65925.1|AF135189_1 zinc dependent protease [Arabidopsis thaliana] gi|3201633|gb|AAC20729.1| FtsH protease (VAR2) [Arabidopsis thaliana] gi|330253372|gb|AEC08466.1| cell division protease ftsH-2 [Arabidopsis thaliana] Length = 695 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 263 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 293 >gi|21672968|ref|NP_661033.1| cell division protein FtsH [Chlorobium tepidum TLS] gi|21646027|gb|AAM71375.1| cell division protein FtsH [Chlorobium tepidum TLS] Length = 706 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG V A + L + +++ + Sbjct: 233 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEMFVGVGAARVRDLFKSAKEKAPCI 292 Query: 109 LFIDEI 114 +FIDEI Sbjct: 293 IFIDEI 298 >gi|12654321|gb|AAH00981.1| Spermatogenesis associated 5-like 1 [Homo sapiens] Length = 753 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG+GKT L Q VARE G + S P + Sbjct: 237 VLLAGPPGVGKTQLVQAVAREAGAELLAVSAPAL 270 >gi|6322994|ref|NP_013066.1| Rix7p [Saccharomyces cerevisiae S288c] gi|2492526|sp|Q07844|RIX7_YEAST RecName: Full=Ribosome biogenesis ATPase RIX7 gi|1360222|emb|CAA97483.1| unnamed protein product [Saccharomyces cerevisiae] gi|285813391|tpg|DAA09287.1| TPA: Rix7p [Saccharomyces cerevisiae S288c] Length = 837 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 570 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 601 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT++A +A EL V F S S P + +G+ + +L D + Sbjct: 242 VLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPCL 301 Query: 109 LFIDEIHRLS 118 +F DEI ++ Sbjct: 302 VFFDEIDAIT 311 >gi|148263973|ref|YP_001230679.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter uraniireducens Rf4] gi|189044135|sp|A5GFA1|CLPX_GEOUR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|146397473|gb|ABQ26106.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter uraniireducens Rf4] Length = 417 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 25/118 (21%) Query: 26 TLEEFT-GQVEACSNLKVFIEAAKARAEAL----------DHVLFVGPPGLGKTTLAQVV 74 L+E+ GQ +A L V + R EA+ ++L +GP G GKT LAQ + Sbjct: 72 VLDEYVIGQNQAKKVLAVAVYNHYKRIEAMAKPGEVEMQKSNILLLGPTGSGKTLLAQTL 131 Query: 75 ARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------LFIDEIHRLS 118 AR L V F + +AG D+ ++ NL D DV ++IDEI +++ Sbjct: 132 ARILKVPFAMADATNLTEAGYVGEDVENIILNLLQAADYDVERAQKGIIYIDEIDKIA 189 >gi|87121307|ref|ZP_01077197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas sp. MED121] gi|86163464|gb|EAQ64739.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas sp. MED121] Length = 425 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 118 NILLIGPTGSGKTLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDV 177 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 178 DKAQRGIVYIDEIDKIS 194 >gi|70995044|ref|XP_752288.1| AAA family ATPase/60S ribosome export protein Rix7 [Aspergillus fumigatus Af293] gi|66849923|gb|EAL90250.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Aspergillus fumigatus Af293] gi|159131044|gb|EDP56157.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Aspergillus fumigatus A1163] Length = 784 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 561 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 592 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 21/104 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108 VL GPPG GKT +A A ELGV F S P I +G+ AL + E+ + Sbjct: 257 VLLHGPPGCGKTMIANAFAAELGVPFIPISAPSIVSGMSGESEKALREHFEEAKRLAPCL 316 Query: 109 LFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGE 140 +FIDEI ++ IV ++L M+D LD G+ Sbjct: 317 IFIDEIDAITPKRESAQREMEKRIVAQLLT-CMDDLALDKTDGK 359 >gi|69245450|ref|ZP_00603445.1| Peptidase M41, FtsH [Enterococcus faecium DO] gi|257879861|ref|ZP_05659514.1| peptidase M41 [Enterococcus faecium 1,230,933] gi|257882587|ref|ZP_05662240.1| peptidase M41 [Enterococcus faecium 1,231,502] gi|257886015|ref|ZP_05665668.1| peptidase M41 [Enterococcus faecium 1,231,501] gi|257891702|ref|ZP_05671355.1| peptidase M41 [Enterococcus faecium 1,231,410] gi|257894177|ref|ZP_05673830.1| peptidase M41 [Enterococcus faecium 1,231,408] gi|258614290|ref|ZP_05712060.1| cell division protein FtsH [Enterococcus faecium DO] gi|260559533|ref|ZP_05831714.1| peptidase M41 [Enterococcus faecium C68] gi|261206684|ref|ZP_05921382.1| peptidase M41 [Enterococcus faecium TC 6] gi|289565046|ref|ZP_06445500.1| peptidase M41 [Enterococcus faecium D344SRF] gi|293553699|ref|ZP_06674323.1| putative cell division protease FtsH [Enterococcus faecium E1039] gi|293563200|ref|ZP_06677656.1| putative cell division protease FtsH [Enterococcus faecium E1162] gi|293570122|ref|ZP_06681202.1| putative cell division protease FtsH [Enterococcus faecium E1071] gi|294614893|ref|ZP_06694784.1| putative cell division protease FtsH [Enterococcus faecium E1636] gi|294618635|ref|ZP_06698174.1| putative cell division protease FtsH [Enterococcus faecium E1679] gi|294623711|ref|ZP_06702544.1| putative cell division protease FtsH [Enterococcus faecium U0317] gi|314938208|ref|ZP_07845508.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133a04] gi|314943103|ref|ZP_07849902.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133C] gi|314949300|ref|ZP_07852643.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0082] gi|314952233|ref|ZP_07855248.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133A] gi|314992091|ref|ZP_07857541.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133B] gi|314996274|ref|ZP_07861330.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133a01] gi|68195832|gb|EAN10268.1| Peptidase M41, FtsH [Enterococcus faecium DO] gi|257814089|gb|EEV42847.1| peptidase M41 [Enterococcus faecium 1,230,933] gi|257818245|gb|EEV45573.1| peptidase M41 [Enterococcus faecium 1,231,502] gi|257821871|gb|EEV49001.1| peptidase M41 [Enterococcus faecium 1,231,501] gi|257828062|gb|EEV54688.1| peptidase M41 [Enterococcus faecium 1,231,410] gi|257830556|gb|EEV57163.1| peptidase M41 [Enterococcus faecium 1,231,408] gi|260074632|gb|EEW62953.1| peptidase M41 [Enterococcus faecium C68] gi|260079177|gb|EEW66870.1| peptidase M41 [Enterococcus faecium TC 6] gi|289163253|gb|EFD11099.1| peptidase M41 [Enterococcus faecium D344SRF] gi|291587494|gb|EFF19378.1| putative cell division protease FtsH [Enterococcus faecium E1071] gi|291592179|gb|EFF23797.1| putative cell division protease FtsH [Enterococcus faecium E1636] gi|291595154|gb|EFF26492.1| putative cell division protease FtsH [Enterococcus faecium E1679] gi|291596926|gb|EFF28144.1| putative cell division protease FtsH [Enterococcus faecium U0317] gi|291602274|gb|EFF32502.1| putative cell division protease FtsH [Enterococcus faecium E1039] gi|291604850|gb|EFF34328.1| putative cell division protease FtsH [Enterococcus faecium E1162] gi|313589518|gb|EFR68363.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133a01] gi|313593305|gb|EFR72150.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133B] gi|313595628|gb|EFR74473.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133A] gi|313598162|gb|EFR77007.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133C] gi|313642404|gb|EFS06984.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133a04] gi|313644306|gb|EFS08886.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0082] Length = 703 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254 >gi|326406698|gb|ADZ63769.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactococcus lactis subsp. lactis CV56] Length = 411 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 111 NILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNI 170 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 171 ERAERGIIYIDEIDKIA 187 >gi|312215534|emb|CBX95486.1| hypothetical protein [Leptosphaeria maculans] Length = 434 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+TL E T Q L ++++ L H+LF GPPG GKT+ +A++L Sbjct: 36 VEKYRPKTLSEVTAQDNTIQILSRTLQSSN-----LPHMLFYGPPGTGKTSTILALAKQL 90 >gi|302308716|ref|NP_985735.2| AFR188Wp [Ashbya gossypii ATCC 10895] gi|299790761|gb|AAS53559.2| AFR188Wp [Ashbya gossypii ATCC 10895] Length = 827 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 560 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 591 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT++A +A EL V F S S P + Sbjct: 242 ILLHGPPGCGKTSIANALAGELQVPFISISAPSV 275 >gi|282856880|ref|ZP_06266138.1| cell division protease FtsH [Pyramidobacter piscolens W5455] gi|282585298|gb|EFB90608.1| cell division protease FtsH [Pyramidobacter piscolens W5455] Length = 607 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 200 ILLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 259 Query: 109 LFIDEI 114 +FIDEI Sbjct: 260 VFIDEI 265 >gi|269991327|emb|CAX12511.1| cell division protein FtsH-like protein [Fucus vesiculosus] Length = 628 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 V+ VGPPG GKT LA+ +A E GV F S SG + A + L E + Sbjct: 210 VIIVGPPGTGKTLLAKAIAGEAGVPFISISGSEFVEMFVGIGASRVRDLFETAERNSPCI 269 Query: 109 LFIDEI 114 LFIDEI Sbjct: 270 LFIDEI 275 >gi|256762060|ref|ZP_05502640.1| peptidase M41 [Enterococcus faecalis T3] gi|257078476|ref|ZP_05572837.1| peptidase M41 [Enterococcus faecalis JH1] gi|256683311|gb|EEU23006.1| peptidase M41 [Enterococcus faecalis T3] gi|256986506|gb|EEU73808.1| peptidase M41 [Enterococcus faecalis JH1] Length = 709 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 214 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 244 >gi|255971765|ref|ZP_05422351.1| peptidase M41 [Enterococcus faecalis T1] gi|255962783|gb|EET95259.1| peptidase M41 [Enterococcus faecalis T1] Length = 711 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 216 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 246 >gi|296817467|ref|XP_002849070.1| replication factor C subunit 3 [Arthroderma otae CBS 113480] gi|238839523|gb|EEQ29185.1| replication factor C subunit 3 [Arthroderma otae CBS 113480] Length = 397 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ +G + + + F+E+ + L H+L GPPG GKT+ +AR + Sbjct: 52 RPDTLDDVSGHQDIIATINRFVESNR-----LPHLLLYGPPGTGKTSTILALARRI 102 >gi|288869580|ref|ZP_05975070.2| AAA family ATPase [Methanobrevibacter smithii DSM 2374] gi|288861611|gb|EFC93909.1| AAA family ATPase [Methanobrevibacter smithii DSM 2374] Length = 740 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 24/124 (19%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 + E+ G + ++ IE R E D VL GPPG GKT LA+ VA E Sbjct: 211 SYEDIGGLKDEVKKVREMIEIPLKRPELFDKLGIAPPKGVLMHGPPGTGKTLLAKAVASE 270 Query: 78 LGVNFRSTSGPVIAK---AGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAM 129 +F + +GP I G L E+ + ++FIDE+ ++ P Sbjct: 271 SDAHFIAINGPEIMSKYVGGSEENLREYFEEAEENAPSIIFIDELDAIA--------PKR 322 Query: 130 EDFQ 133 ED Q Sbjct: 323 EDTQ 326 >gi|254168911|ref|ZP_04875751.1| ATPase, AAA family protein [Aciduliprofundum boonei T469] gi|197622175|gb|EDY34750.1| ATPase, AAA family protein [Aciduliprofundum boonei T469] Length = 437 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+ L + G +A + + + E + + ++ VG PG GKTT A+ +A E+ Sbjct: 6 VEKYRPKRLRDIVGNTQAINEILRWAEEWEEGKPSYKALILVGKPGCGKTTTARALANEM 65 Query: 79 G 79 G Sbjct: 66 G 66 >gi|195343803|ref|XP_002038480.1| GM10839 [Drosophila sechellia] gi|194133501|gb|EDW55017.1| GM10839 [Drosophila sechellia] Length = 711 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 468 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 527 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 528 IFIDEIDAL 536 >gi|134046379|ref|YP_001097864.1| replication factor C large subunit [Methanococcus maripaludis C5] gi|166977384|sp|A4FZL6|RFCL_METM5 RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|132664004|gb|ABO35650.1| replication factor C large subunit [Methanococcus maripaludis C5] Length = 484 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP++L + G + L +IE+ + +L GPPG GKTTLA +A++ Sbjct: 5 VEKYRPKSLNDVAGHNKTKQALINWIESF-VNGQKQKPILLAGPPGSGKTTLAHAIAKDY 63 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLE-DRDVLFIDEIHRLS 118 + + VIA+ AA +L R ++ +DE+ LS Sbjct: 64 AFDVIELNASDKRNKDVIAQVVGTAATSKSLTGKRTLIVLDEVDGLS 110 >gi|56460112|ref|YP_155393.1| ATP-dependent protease ATP-binding subunit ClpX [Idiomarina loihiensis L2TR] gi|61211402|sp|Q5QXN9|CLPX_IDILO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|56179122|gb|AAV81844.1| ATP-dependent protease Clp, ATPase subunit [Idiomarina loihiensis L2TR] Length = 423 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 113 NILLIGPTGSGKTFLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 172 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 173 EKAERGIVYIDEIDKIS 189 >gi|150017388|ref|YP_001309642.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] gi|149903853|gb|ABR34686.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] Length = 578 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------EDRDV 108 V+ G PG GKT LA+ VA E GV F + SG V G AA + NL + + V Sbjct: 185 VILYGDPGTGKTLLAKAVAGEAGVPFYALSGSDFVQVYVGVGAARVRNLFKKAKSQGKAV 244 Query: 109 LFIDEI 114 +FIDEI Sbjct: 245 IFIDEI 250 >gi|114330231|ref|YP_746453.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas eutropha C91] gi|122314710|sp|Q0AJI3|CLPX_NITEC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|114307245|gb|ABI58488.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosomonas eutropha C91] Length = 427 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 114 AKSNILLIGPTGSGKTLLAQTLARLLDVPFVIADATTLTEAGYVGEDVENIIQKLLQASN 173 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 174 HDVEKAQRGIVYIDEIDKIS 193 >gi|57168871|ref|ZP_00368001.1| cell division protein (ftsH) [Campylobacter coli RM2228] gi|305431978|ref|ZP_07401145.1| ATP-dependent metalloprotease FtsH [Campylobacter coli JV20] gi|57019707|gb|EAL56393.1| cell division protein (ftsH) [Campylobacter coli RM2228] gi|304445062|gb|EFM37708.1| ATP-dependent metalloprotease FtsH [Campylobacter coli JV20] Length = 534 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG+GKT +A+ VA E GV F SG + G A + L R + Sbjct: 184 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEIYVGMGAKRVRELFSRAKMMAPSI 243 Query: 109 LFIDEI 114 +FIDEI Sbjct: 244 IFIDEI 249 >gi|322381175|ref|ZP_08055178.1| hypothetical protein PL1_0087 [Paenibacillus larvae subsp. larvae B-3650] gi|321154751|gb|EFX47022.1| hypothetical protein PL1_0087 [Paenibacillus larvae subsp. larvae B-3650] Length = 677 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 199 VLLNGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 258 Query: 109 LFIDEI 114 +FIDEI Sbjct: 259 IFIDEI 264 >gi|281344564|gb|EFB20148.1| hypothetical protein PANDA_019466 [Ailuropoda melanoleuca] Length = 389 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED ++S E G E L+ IE E V L Sbjct: 118 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIREMFNYARDHQPCIIF 231 Query: 111 IDEI 114 +DEI Sbjct: 232 MDEI 235 >gi|260939858|ref|XP_002614229.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720] gi|238852123|gb|EEQ41587.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720] Length = 339 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L++ Q A L+ +++A L H+LF GPPG GKT+ +A++L Sbjct: 19 RPKKLDDVASQDHAVRVLQKTLQSAN-----LPHMLFYGPPGTGKTSTVLALAKQL 69 >gi|269120919|ref|YP_003309096.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sebaldella termitidis ATCC 33386] gi|268614797|gb|ACZ09165.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sebaldella termitidis ATCC 33386] Length = 408 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 30/148 (20%) Query: 1 MMDREGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKARA---- 51 +++ E N +ED + L +P + L+++ GQ EA L V + R Sbjct: 42 LIEDEMKYDNNYLEEDHGLKLYKPSEIKKKLDDYIIGQDEAKKVLAVSVYNHYKRITHKL 101 Query: 52 EALD-------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL 100 + +D +VL +GP G GKT LAQ +AR L V F + +AG D+ +L Sbjct: 102 QNVDDIELQKSNVLLMGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVL 161 Query: 101 TNL---EDRD-------VLFIDEIHRLS 118 L D D +++IDEI +++ Sbjct: 162 LKLIKAADYDINAAQHGIIYIDEIDKIA 189 >gi|303271193|ref|XP_003054958.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462932|gb|EEH60210.1| predicted protein [Micromonas pusilla CCMP1545] Length = 833 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%) Query: 29 EFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +FT +VE + + A +A+ VLF GPPG GKT LA+ VA E GV F +G Sbjct: 260 DFTYEVEDDN-----LSAERAKLSIPKGVLFEGPPGTGKTLLAKAVAGEAGVPFFYANG 313 >gi|146303379|ref|YP_001190695.1| TBP-interacting protein TIP49 [Metallosphaera sedula DSM 5348] gi|145701629|gb|ABP94771.1| TBP-interacting protein TIP49 [Metallosphaera sedula DSM 5348] Length = 452 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ+EA V ++ K A +L VGPPG GKT LA +A+ELG Sbjct: 39 LVGQLEAREAAWVVVQLIKQGKMAGKGILLVGPPGTGKTALAVGIAKELG 88 >gi|15234455|ref|NP_195376.1| AAA-type ATPase family protein [Arabidopsis thaliana] gi|4006905|emb|CAB16835.1| ATPase-like protein [Arabidopsis thaliana] gi|7270606|emb|CAB80324.1| ATPase-like protein [Arabidopsis thaliana] Length = 620 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 31/156 (19%) Query: 38 SNLKVFIEA-AKARAEALDH------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 ++LK IE A+A A H ++F GPPG GKT +A+ +AR+ G+++ +G + Sbjct: 347 TSLKKRIERLARATANTKSHQAPFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 406 Query: 91 AKAGDLAAL----LTNLEDRD----VLFIDE-----IHRLSIIVEEILYPAMEDFQLDLM 137 A G A + + + +LFIDE R S + E A+ L+ Sbjct: 407 APLGSQAVTKIHQIFDWAKKSNKGLLLFIDEADAFLCERNSTYMSEAQRSALN----ALL 462 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173 G +R + L+ AT R G L + + DR Sbjct: 463 FRTGDQSRDI-------VLVLATNRRGDLDSAVTDR 491 >gi|323508048|emb|CBQ67919.1| probable MSP1-intra-mitochondrial sorting protein [Sporisorium reilianum] Length = 399 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ +A+E G F + + ++ L A L +L + + Sbjct: 124 VLLYGPPGTGKTMLAKALAKESGATFINMHVSTLTNKWFGESNKLVAALFSLARKLQPSI 183 Query: 109 LFIDEI 114 +FIDEI Sbjct: 184 IFIDEI 189 >gi|315925531|ref|ZP_07921741.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621072|gb|EFV01043.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263] Length = 652 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 27 LEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 + G+ EA NL + + A A VL VGPPG GKT LA+ VA E Sbjct: 194 FSDVAGEEEAKENLSEIVSYLDDPKQYANIGATMPKGVLLVGPPGTGKTMLAKAVAGEAN 253 Query: 80 VNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 V F S SG + A + L +++ ++F+DEI Sbjct: 254 VPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFVDEI 296 >gi|312282051|dbj|BAJ33891.1| unnamed protein product [Thellungiella halophila] Length = 693 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 262 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 292 >gi|303244620|ref|ZP_07330953.1| ATPase associated with various cellular activities AAA_3 [Methanothermococcus okinawensis IH1] gi|302485046|gb|EFL47977.1| ATPase associated with various cellular activities AAA_3 [Methanothermococcus okinawensis IH1] Length = 310 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 12/88 (13%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDR---- 106 HVL G PGL KTTLA+ ++ +G+ F G P G++ + T Sbjct: 33 HVLLEGVPGLAKTTLAKSFSKCMGLYFSRVQGTPDLIPSDITGGEIYKMQTGEFQYIPGP 92 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMED 131 +++ +DEI+R+S + L AME+ Sbjct: 93 LFANIVLVDEINRMSPKTQSALLEAMEE 120 >gi|298492637|ref|YP_003722814.1| DNA polymerase III subunits gamma and tau ['Nostoc azollae' 0708] gi|298234555|gb|ADI65691.1| DNA polymerase III, subunits gamma and tau ['Nostoc azollae' 0708] Length = 663 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP++ E GQ + L I +AK LF GP G GKT+ A+++A+ L Sbjct: 11 RPKSFAELVGQEAITTTLTNAISSAKIAPA----YLFTGPRGTGKTSSARILAKSLNCLK 66 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 P+ D+ +T DV+ ID Sbjct: 67 SDKPTPIPCGVCDICQGITKGYSLDVIEID 96 >gi|297822823|ref|XP_002879294.1| hypothetical protein ARALYDRAFT_482018 [Arabidopsis lyrata subsp. lyrata] gi|297325133|gb|EFH55553.1| hypothetical protein ARALYDRAFT_482018 [Arabidopsis lyrata subsp. lyrata] Length = 695 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 263 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 293 >gi|281491647|ref|YP_003353627.1| ATP-dependent endopeptidase Clp ATP-binding subunit ClpX [Lactococcus lactis subsp. lactis KF147] gi|281375365|gb|ADA64878.1| ATP-dependent endopeptidase Clp, ATP-binding subunit ClpX [Lactococcus lactis subsp. lactis KF147] Length = 411 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 111 NILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNI 170 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 171 ERAERGIIYIDEIDKIA 187 >gi|255974765|ref|ZP_05425351.1| peptidase M41 [Enterococcus faecalis T2] gi|255967637|gb|EET98259.1| peptidase M41 [Enterococcus faecalis T2] Length = 711 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 216 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 246 >gi|255323418|ref|ZP_05364549.1| Cell division protease FtsH homolog [Campylobacter showae RM3277] gi|255299455|gb|EET78741.1| Cell division protease FtsH homolog [Campylobacter showae RM3277] Length = 642 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNL--EDRDV 108 VL VGPPG GKT LA+ VA E V F S SG V A + L N E + Sbjct: 214 VLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAI 273 Query: 109 LFIDEI 114 +FIDEI Sbjct: 274 VFIDEI 279 >gi|227502057|ref|ZP_03932106.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725] gi|227077212|gb|EEI15175.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725] Length = 808 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233 >gi|255080816|ref|XP_002503981.1| predicted protein [Micromonas sp. RCC299] gi|226519248|gb|ACO65239.1| predicted protein [Micromonas sp. RCC299] Length = 239 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 8/79 (10%) Query: 44 IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLT 101 + A +AR VLF GPPG GKT LA+ +A E GV F +G + G A + Sbjct: 5 LSAERARLSIPKGVLFEGPPGTGKTLLAKAIAGEAGVPFFYANGSEFVEMFVGVAAKRVR 64 Query: 102 NLEDR------DVLFIDEI 114 +L R ++FIDE+ Sbjct: 65 DLFKRARQVSPSIIFIDEL 83 >gi|291456563|ref|ZP_06595953.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium breve DSM 20213] gi|291381840|gb|EFE89358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium breve DSM 20213] Length = 453 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G+GKT LAQ +AR + V F T + +AG D+ +L L D Sbjct: 139 AKSNILLLGPTGVGKTYLAQSLARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 198 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 199 GDVSRAQHGIIYIDEIDKIA 218 >gi|195502105|ref|XP_002098077.1| GE10164 [Drosophila yakuba] gi|194184178|gb|EDW97789.1| GE10164 [Drosophila yakuba] Length = 672 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 429 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 488 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 489 IFIDEIDAL 497 >gi|281357811|ref|ZP_06244297.1| ATP-dependent protease La [Victivallis vadensis ATCC BAA-548] gi|281315758|gb|EFA99785.1| ATP-dependent protease La [Victivallis vadensis ATCC BAA-548] Length = 805 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNLE 104 + VGPPG+GKT+L Q +AR + NF R + G V +A G + ++ NL+ Sbjct: 378 LCLVGPPGVGKTSLGQSIARAMNRNFVRVSLGGVRDEAEIRGHRRTYVGAMPGRIVQNLK 437 Query: 105 D----RDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V +DEI +L + + E+L PA +++ + E V +LS Sbjct: 438 KAGTANPVFMLDEIDKLANDFRGDPASALLEVLDPA-QNYAFNDHYLE------VDCDLS 490 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + IA + + PL+DR I IRL Y + + I +R Sbjct: 491 KVFFIATANLLDTIPGPLRDRMEI-IRLPGYTSFEKREIARR 531 >gi|150400075|ref|YP_001323842.1| replication factor C large subunit [Methanococcus vannielii SB] gi|166977386|sp|A6URV8|RFCL_METVS RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|150012778|gb|ABR55230.1| AAA ATPase central domain protein [Methanococcus vannielii SB] Length = 492 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP++L + G + L +IE+ R VL GPPG GKTT+A +A + Sbjct: 5 VEKYRPKSLNDVAGHSKTKEALCYWIESF-IRGNKQKPVLLFGPPGSGKTTMAHAIANDY 63 Query: 79 GVN 81 + Sbjct: 64 NFD 66 >gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130] gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130] Length = 347 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP +LE+ + + + FIE + L H+LF GPPG GKT+ VAR + Sbjct: 31 VEKYRPVSLEDVVSHQDITTTIDRFIEKNR-----LPHLLFYGPPGTGKTSTILAVARRI 85 Query: 79 -GVNFR 83 G +++ Sbjct: 86 YGSDYK 91 >gi|124087412|ref|XP_001346845.1| AAA ATPase, cell division control protein [Paramecium tetraurelia strain d4-2] gi|145474957|ref|XP_001423501.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|50057234|emb|CAH03218.1| AAA ATPase, cell division control protein, putative [Paramecium tetraurelia] gi|124390561|emb|CAK56103.1| unnamed protein product [Paramecium tetraurelia] Length = 632 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 26 TLEEFTGQVEAC-----SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 +L+E +++ C N +VF + K R A VL GPPG GKT LA+ VA Sbjct: 377 SLQELRKELDNCLVLPIQNPEVF-QKFKVRPPA--GVLLWGPPGCGKTLLAKAVANASRA 433 Query: 81 NFRSTSGPVI 90 NF + GP I Sbjct: 434 NFIAVKGPEI 443 >gi|49246401|gb|AAT58332.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246403|gb|AAT58333.1| FtsH-like protein [Triticum monococcum] gi|49246417|gb|AAT58340.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246435|gb|AAT58349.1| FtsH-like protein [Triticum monococcum] Length = 152 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 57 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 87 >gi|39938793|ref|NP_950559.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] gi|39721902|dbj|BAD04392.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] Length = 422 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 16/159 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108 VL GPPG GKT LA+ +A E+ + F + SG V G A+ + +L + + Sbjct: 216 VLLEGPPGTGKTLLAKALANEVKIPFYAVSGSEFVEVYVGVGASRIRDLFQKAKRTTPCI 275 Query: 109 LFIDEIHRLSIIVEE--ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166 +FIDEI L + I+ D L+ ++ E LS+ +IAAT R+ +L Sbjct: 276 IFIDEIDALGAKRKNNSIIESREHDQSLNQLLLEMDGF----FKLSQIIIIAATNRIDML 331 Query: 167 TNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203 L RF I++N ++ + I++ AK +++ Sbjct: 332 DPALIRPGRFDRKIKINLPNLKAREAILKVHAKNKNISL 370 >gi|329116171|ref|ZP_08244888.1| ATP-dependent metallopeptidase HflB [Streptococcus parauberis NCFD 2020] gi|326906576|gb|EGE53490.1| ATP-dependent metallopeptidase HflB [Streptococcus parauberis NCFD 2020] Length = 668 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E V F S SG V A + +L + + +R + Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAAVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282 Query: 109 LFIDEI 114 +FIDEI Sbjct: 283 IFIDEI 288 >gi|325970630|ref|YP_004246821.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy] gi|324025868|gb|ADY12627.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy] Length = 651 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----V 108 VL VGPPG GKT LA+ VA E GV F SG + G AA + +L + R+ + Sbjct: 244 VLLVGPPGTGKTLLAKAVAGEAGVPFFKMSGADFVEMFVGVGAARVRDLFRQARENSPCI 303 Query: 109 LFIDEI 114 +FIDEI Sbjct: 304 IFIDEI 309 >gi|317499321|ref|ZP_07957593.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium 5_1_63FAA] gi|316893412|gb|EFV15622.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium 5_1_63FAA] Length = 672 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/30 (66%), Positives = 21/30 (70%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ VA E GV F S SG Sbjct: 211 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSG 240 >gi|307290189|ref|ZP_07570107.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0411] gi|306498745|gb|EFM68244.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0411] Length = 728 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 233 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 263 >gi|319788748|ref|YP_004090063.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus albus 7] gi|315450615|gb|ADU24177.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus albus 7] Length = 423 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103 +VL +GP G GKT LAQ +AR L V F + +AG D+ +LT N+ Sbjct: 121 NVLLLGPTGTGKTLLAQTLARLLNVPFAIADATTLTEAGYVGDDVENVLTRLIQAANYNV 180 Query: 104 ED--RDVLFIDEIHRLS 118 E+ +++IDEI +++ Sbjct: 181 EEASHGIIYIDEIDKIA 197 >gi|268607891|ref|ZP_06141622.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Ruminococcus flavefaciens FD-1] Length = 742 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 5/76 (6%) Query: 12 VSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLG 66 VS ED ++ L R + GQ EA + + ++ +KA + L +LFVGP G+G Sbjct: 432 VSNEDITGLAGLEDRMKKRIFGQDEAIAQVVNAVKFSKAGLLEENKPLASLLFVGPTGVG 491 Query: 67 KTTLAQVVARELGVNF 82 KT +A+ +A ELGV Sbjct: 492 KTEIAKSLAEELGVKL 507 >gi|257461436|ref|ZP_05626532.1| Cell division protease FtsH homolog [Campylobacter gracilis RM3268] gi|257441159|gb|EEV16306.1| Cell division protease FtsH homolog [Campylobacter gracilis RM3268] Length = 649 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL VGPPG GKT LA+ VA E V F S SG V A + L N + + + Sbjct: 215 VLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFDNAKKQAPAI 274 Query: 109 LFIDEI 114 +FIDEI Sbjct: 275 VFIDEI 280 >gi|241896601|ref|ZP_04783897.1| M41 family endopeptidase FtsH [Weissella paramesenteroides ATCC 33313] gi|241870082|gb|EER73833.1| M41 family endopeptidase FtsH [Weissella paramesenteroides ATCC 33313] Length = 689 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 231 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKAAPSI 290 Query: 109 LFIDEI 114 +FIDEI Sbjct: 291 IFIDEI 296 >gi|261200183|ref|XP_002626492.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081] gi|239593564|gb|EEQ76145.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081] gi|239607557|gb|EEQ84544.1| replication factor C [Ajellomyces dermatitidis ER-3] gi|327357386|gb|EGE86243.1| replication factor C [Ajellomyces dermatitidis ATCC 18188] Length = 404 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TLE+ +G + + FI+ + L H+L GPPG GKT+ +AR + Sbjct: 52 RPNTLEDVSGHQDIIGTINRFIDTNR-----LPHLLLYGPPGTGKTSTILALARRI 102 >gi|258404645|ref|YP_003197387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfohalobium retbaense DSM 5692] gi|257796872|gb|ACV67809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfohalobium retbaense DSM 5692] Length = 414 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++LFVGP G GKT +AQ +AR L V F + +AG L LL N + Sbjct: 110 NILFVGPTGSGKTLMAQTLARILNVPFAIADATNLTEAGYVGEDVENILVQLLQNADYDL 169 Query: 105 ---DRDVLFIDEIHRLS 118 + +++IDEI +++ Sbjct: 170 EKASKGIIYIDEIDKVA 186 >gi|225620830|ref|YP_002722088.1| DNA polymerase III subunit gamma and tau [Brachyspira hyodysenteriae WA1] gi|225215650|gb|ACN84384.1| DNA polymerase III, gamma and tau subunits [Brachyspira hyodysenteriae WA1] Length = 527 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 103/255 (40%), Gaps = 49/255 (19%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T EE GQ + I A K A A LF G G+GKT+LA+++A+ L Sbjct: 13 RPQTFEEVIGQEHITKTISKSI-AQKKIAHAY---LFSGAHGVGKTSLARIIAKALNC-- 66 Query: 83 RSTSGPVIAKAGDLAALLTNLED---RDVLFID--------------EIHRLS------- 118 +GP G + T +E+ DV+ ID E R+S Sbjct: 67 --VNGPTDKPCG-VCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYK 123 Query: 119 -IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177 I++E+ E F L E P A V I ATT + ++ R Sbjct: 124 VYIIDEVHQITNEAFNALLKTLEEPPAHVV--------FILATTEAERVLPTIRSRCQ-- 173 Query: 178 IRLNFYE--IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235 + F IEDL+ I++ + +EA IA ++RG+ R + +L ++ A Sbjct: 174 -QYTFKSLGIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKM--IAYT 230 Query: 236 AHAKTITREIADAAL 250 K IT +A + Sbjct: 231 TDKKYITSADVNAVV 245 >gi|225377197|ref|ZP_03754418.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM 16841] gi|225210957|gb|EEG93311.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM 16841] Length = 604 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 VFIDEI 266 >gi|194898883|ref|XP_001978992.1| GG13037 [Drosophila erecta] gi|190650695|gb|EDV47950.1| GG13037 [Drosophila erecta] Length = 666 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 423 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 482 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 483 IFIDEIDAL 491 >gi|188578370|ref|YP_001915299.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas oryzae pv. oryzae PXO99A] gi|238689531|sp|B2SMI2|CLPX_XANOP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|188522822|gb|ACD60767.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthomonas oryzae pv. oryzae PXO99A] Length = 428 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 29/133 (21%) Query: 15 EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE----------ALDHVLF 59 + A SL +PR + E GQ+ A L V + R E A ++L Sbjct: 60 QSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILL 119 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108 VGP G GKT LA+ +AR L V F + +AG + + N+ D DV Sbjct: 120 VGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQ 179 Query: 109 ---LFIDEIHRLS 118 ++IDEI ++S Sbjct: 180 QGIVYIDEIDKIS 192 >gi|164427356|ref|XP_956468.2| hypothetical protein NCU03359 [Neurospora crassa OR74A] gi|157071709|gb|EAA27232.2| hypothetical protein NCU03359 [Neurospora crassa OR74A] Length = 828 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F + SG Sbjct: 404 VLLVGPPGTGKTLLARAVAGEAGVPFFNMSG 434 >gi|119898361|ref|YP_933574.1| ATP-dependent protease ATP-binding subunit ClpX [Azoarcus sp. BH72] gi|166214754|sp|A1K782|CLPX_AZOSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|119670774|emb|CAL94687.1| ATP-dependent Clp protease ATP-binding subunit [Azoarcus sp. BH72] Length = 422 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 25/112 (22%) Query: 32 GQVEACSNLKVFIEAAKARAEALD-----------HVLFVGPPGLGKTTLAQVVARELGV 80 GQ +A NL V + R L ++L +GP G GKT LAQ +AR L V Sbjct: 80 GQAQAKRNLSVAVYNHYKRLRHLSGRQDEVELSKSNILLIGPTGSGKTLLAQTLARLLNV 139 Query: 81 NFRSTSGPVIAKAGDLAALLTNL-------EDRDV-------LFIDEIHRLS 118 F + +AG + + N+ D DV ++IDEI ++S Sbjct: 140 PFVMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDEIDKIS 191 >gi|222054005|ref|YP_002536367.1| ATP-dependent protease La [Geobacter sp. FRC-32] gi|221563294|gb|ACM19266.1| ATP-dependent protease La [Geobacter sp. FRC-32] Length = 817 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNLE 104 + FVGPPG+GKT+L + +AR +G F R + G V +A G L ++ L+ Sbjct: 359 LCFVGPPGVGKTSLGKSIARAMGRKFVRISLGGVRDEAEIRGHRRTYVGALPGRIIQGLK 418 Query: 105 ----DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + V +DE+ +L S + E+L P D + ++ NLS Sbjct: 419 QAGSNNPVFMLDELDKLGADFRGDPSSALLEVLDPEQNHSFSDHYI-------NLPFNLS 471 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 IA ++ + PL+DR + I L+ Y E+ I +R Sbjct: 472 DVMFIATANQMDTIPGPLRDRMEV-ISLSGYTEEEKLQIAKR 512 >gi|49246461|gb|AAT58362.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] Length = 152 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 56 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 86 >gi|440874|gb|AAA61616.1| hLON ATP-dependent protease [Homo sapiens] Length = 962 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S E+ D++ + E+ G + + FI ++ R +L F GPPG+GKT++A Sbjct: 477 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 536 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G V A G + L + + ++ IDE+ Sbjct: 537 RSIARALNREYFRFSVGGMTDVTEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 596 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ S + E+L P LD + V ++LS+ I + Sbjct: 597 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 649 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 650 EPLRDRMEM-INVSGYVAQEKLAIAER 675 >gi|15673133|ref|NP_267307.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis subsp. lactis Il1403] gi|13878442|sp|Q9CGE6|CLPX_LACLA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|12724114|gb|AAK05249.1|AE006347_7 ATP dependent Clp protease [Lactococcus lactis subsp. lactis Il1403] Length = 411 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 111 NILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNI 170 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 171 ERAERGIIYIDEIDKIA 187 >gi|84499431|ref|ZP_00997719.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis HTCC2597] gi|84392575|gb|EAQ04786.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis HTCC2597] Length = 422 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 17/98 (17%) Query: 38 SNLKVFIEAAKARAE---ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 ++ K AAK+ + A ++L +GP G GKT LAQ +AR L V F + +AG Sbjct: 93 NHYKRLNHAAKSGGDIELAKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAG 152 Query: 95 DLAALLTNL--------------EDRDVLFIDEIHRLS 118 + + N+ R +++IDE+ +++ Sbjct: 153 YVGEDVENIILKLLQSSEYNVEKAQRGIVYIDEVDKIT 190 >gi|332977274|gb|EGK14065.1| ATP-dependent Clp protease ATP-binding subunit [Psychrobacter sp. 1501(2011)] Length = 425 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ D DV Sbjct: 128 NILLIGPTGSGKTLLAQTLARMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYDV 187 Query: 109 -------LFIDEIHRLS 118 +++DEI ++S Sbjct: 188 ERAEQGIIYVDEIDKIS 204 >gi|331003433|ref|ZP_08326932.1| hypothetical protein HMPREF0491_01794 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412479|gb|EGG91868.1| hypothetical protein HMPREF0491_01794 [Lachnospiraceae oral taxon 107 str. F0167] Length = 603 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 201 ILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 VFIDEI 266 >gi|325179752|emb|CCA14155.1| ATPase putative [Albugo laibachii Nc14] Length = 551 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 35/160 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAK-----AGDLAALLTNLEDRD--V 108 VLF GPPG GKT A+++A++ G+ V++K L+ + E D + Sbjct: 334 VLFEGPPGTGKTLTARIIAQQAGIPMIHIPVEAVVSKWYGESEKKLSTIFDACEQLDGAI 393 Query: 109 LFIDE-----------IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157 +FIDE IH S + +L +E F+ + + T+I Sbjct: 394 IFIDEIDALAGDRSGGIHEASRRILSVLLQKVEGFE----------------SAQKTTVI 437 Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 AT R L L RF + IR + + I +R AK Sbjct: 438 CATNRKEDLDAALLSRFDLCIRYDLPDQSTRTAIFKRYAK 477 >gi|311235340|gb|ADP88194.1| response regulator receiver protein [Desulfovibrio vulgaris RCH1] Length = 682 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 53/221 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98 + FVGPPG+GKT++ Q +A+ + F R+ +G + + + A Sbjct: 248 LCFVGPPGVGKTSVGQAIAKAMNRPFVRLSLADLRDEAELRGHRRTYAGAMPGRI--MQA 305 Query: 99 LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 L T V +DE+ ++ ++ + E+L P D LD V + + Sbjct: 306 LRTAGVRNPVFMLDEMDKMGQDARSDPAMALLELLDPEQNDRFLDRYV-------DLPFD 358 Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDE 206 LS IA + PL DR + + E E + ++ R + GL Sbjct: 359 LSEVMFIATANDTSRMRGPLLDRLEVVPFAGYSEDEKADIASRFLLPRQLREHGLV---- 414 Query: 207 AACEIAMRSRGTPRIAGRLLRR-VRDFAEVAHAKTITREIA 246 P +A LRR VRD+ + A + + RE+A Sbjct: 415 ---------HPRPVVADEALRRIVRDYTDEAGVRGLERELA 446 >gi|311030169|ref|ZP_07708259.1| stage V sporulation protein K [Bacillus sp. m3-13] Length = 310 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 84/202 (41%), Gaps = 42/202 (20%) Query: 56 HVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDLAALL---TNLEDRD---- 107 H++F G PG GKTT+A+++ + +N S + A+ DL T + RD Sbjct: 89 HMMFKGNPGTGKTTVARLIGKLFCDMNVLSKGHLIEAERADLVGEYIGHTAQKTRDLVKK 148 Query: 108 ----VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 +LF+DE + L+ E + L MED Q D ++ R + F Sbjct: 149 ALGGILFVDEAYSLARGGEKDFGKEAIDTLVKHMEDKQHDFILILAGYQRE----MEEF- 203 Query: 156 LIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI--- 211 L TNP L RF I + Y +E+L I QR K ++ EA ++ Sbjct: 204 ---------LRTNPGLISRFPIIVDFPDYSVEELMEICQRMLKEREYIMSKEAEWKMREH 254 Query: 212 --AMRSRGTPRI--AGRLLRRV 229 M+S P GR +R V Sbjct: 255 LNQMKSVLLPSAFSNGRYIRNV 276 >gi|295094966|emb|CBK84057.1| ATP-dependent metalloprotease FtsH [Coprococcus sp. ART55/1] Length = 606 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 204 ILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDLFQQAKEKAPCI 263 Query: 109 LFIDEI 114 +FIDEI Sbjct: 264 VFIDEI 269 >gi|256960612|ref|ZP_05564783.1| peptidase M41 [Enterococcus faecalis Merz96] gi|256951108|gb|EEU67740.1| peptidase M41 [Enterococcus faecalis Merz96] Length = 718 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 253 >gi|256826248|ref|YP_003150208.1| membrane protease FtsH catalytic subunit [Kytococcus sedentarius DSM 20547] gi|256689641|gb|ACV07443.1| membrane protease FtsH catalytic subunit [Kytococcus sedentarius DSM 20547] Length = 698 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 201 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 231 >gi|255084099|ref|XP_002508624.1| predicted protein [Micromonas sp. RCC299] gi|226523901|gb|ACO69882.1| predicted protein [Micromonas sp. RCC299] Length = 717 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT LA+ VA E GV F TSG Sbjct: 251 LLLVGPPGTGKTMLARAVAGEAGVPFFYTSG 281 >gi|195111314|ref|XP_002000224.1| GI10108 [Drosophila mojavensis] gi|193916818|gb|EDW15685.1| GI10108 [Drosophila mojavensis] Length = 738 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 495 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 554 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 555 IFIDEIDAL 563 >gi|167465129|ref|ZP_02330218.1| Cell division protein ftsH [Paenibacillus larvae subsp. larvae BRL-230010] Length = 629 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 151 VLLNGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 210 Query: 109 LFIDEI 114 +FIDEI Sbjct: 211 IFIDEI 216 >gi|145486997|ref|XP_001429504.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124396597|emb|CAK62106.1| unnamed protein product [Paramecium tetraurelia] Length = 412 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 +LF GPPG GKT LA+ VA ++ F + S + + G+ L+ L + V Sbjct: 179 ILFYGPPGNGKTLLAKAVANQIKCCFFNVSASTLVQKHLGEGEKLMKTLFNVAFKFQPSV 238 Query: 109 LFIDEI 114 +FIDEI Sbjct: 239 IFIDEI 244 >gi|108763997|ref|YP_631762.1| hypothetical protein MXAN_3572 [Myxococcus xanthus DK 1622] gi|108467877|gb|ABF93062.1| conserved hypothetical protein [Myxococcus xanthus DK 1622] Length = 1855 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 R + + +L + PPG GKTTL + VA LG+ F +GP + + Sbjct: 1285 RTDRMGMLLLMSPPGYGKTTLMEYVASRLGLTFVKVNGPALGHS 1328 >gi|15679634|ref|NP_276751.1| cell division control protein Cdc48 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622767|gb|AAB86112.1| cell division control protein Cdc48 [Methanothermobacter thermautotrophicus str. Delta H] Length = 732 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ IE R E + VL GPPG GKT LA+ VA E Sbjct: 203 TYEDIGGLKEEVKKVREMIEIPLKRPELFERLGITPPKGVLMHGPPGTGKTLLAKAVANE 262 Query: 78 LGVNFRSTSGPVI 90 +F + +GP I Sbjct: 263 SDAHFIAINGPEI 275 >gi|169771859|ref|XP_001820399.1| replication factor C subunit 3 [Aspergillus oryzae RIB40] gi|83768258|dbj|BAE58397.1| unnamed protein product [Aspergillus oryzae] Length = 398 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ +G + + + F++A + L H+L GPPG GKT+ +AR + Sbjct: 50 RPNTLDDVSGHQDILATINRFVDANR-----LPHLLLYGPPGTGKTSTILALARRI 100 >gi|28493446|ref|NP_787607.1| ATP-dependent protease ATP-binding subunit ClpX [Tropheryma whipplei str. Twist] gi|46576524|sp|Q83G50|CLPX_TROWT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|28476487|gb|AAO44576.1| ATP-dependent Clp protease ATP-binding subunit [Tropheryma whipplei str. Twist] Length = 423 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA-----ALLTNLEDRD--- 107 ++L +GP G GKT LAQ +AR L V F + +AG + LL L+D D Sbjct: 120 NILLIGPTGCGKTYLAQTLARMLRVPFAVADATALTEAGYVGDDVENVLLKLLQDADFDI 179 Query: 108 ------VLFIDEIHRLS 118 ++ IDEI ++S Sbjct: 180 TRAEAGIVCIDEIDKIS 196 >gi|85709567|ref|ZP_01040632.1| Cell division cycle protein [Erythrobacter sp. NAP1] gi|85688277|gb|EAQ28281.1| Cell division cycle protein [Erythrobacter sp. NAP1] Length = 742 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 23/38 (60%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 VL GPPG GKT LAQ VA E F + +GP I +G Sbjct: 212 VLLHGPPGTGKTRLAQAVANESDAEFFTINGPEIMGSG 249 >gi|325846375|ref|ZP_08169344.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481559|gb|EGC84599.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 678 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 VFIDEI 274 >gi|320032422|gb|EFW14375.1| cbxX protein [Coccidioides posadasii str. Silveira] Length = 1240 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 20/133 (15%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD----HVLFVGPPGLGKTTLAQVVA- 75 L+R + LEE Q ++K ++ +++ +L+ +V+F G PG GKTT A++ A Sbjct: 169 LMRYQGLEEVKQQF---LDIKSKVDICESQGRSLNRERFNVVFQGNPGTGKTTFARLYAE 225 Query: 76 --RELGV----NFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEI 124 +GV F+ T+G +A G A +ED VLFIDE ++L+ E Sbjct: 226 FLHSVGVINSSYFKETAGIALAVKGAEGA-QDEVEDILNHNGGVLFIDEAYQLTAAYIEA 284 Query: 125 LYPAMEDFQLDLM 137 L DF L M Sbjct: 285 LGKQALDFLLKAM 297 >gi|319790868|ref|YP_004152508.1| aaa atpase central domain protein [Variovorax paradoxus EPS] gi|315593331|gb|ADU34397.1| AAA ATPase central domain protein [Variovorax paradoxus EPS] Length = 774 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 31/57 (54%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 T +F+ E L + AA AR E +VL GPPG GKT LA+VVA+ G+ Sbjct: 283 TPHDFSFVEEDAQMLVTLLRAAVARKEPGVNVLLYGPPGTGKTELAKVVAQAAGLEL 339 >gi|311893429|dbj|BAJ25846.1| ATP-dependent zinc metalloprotease ThFtsH8 [Eutrema salsugineum] Length = 693 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 262 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 292 >gi|293382699|ref|ZP_06628624.1| cell division protein FtsH [Enterococcus faecalis R712] gi|312908595|ref|ZP_07767537.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO 512] gi|291079859|gb|EFE17223.1| cell division protein FtsH [Enterococcus faecalis R712] gi|310625382|gb|EFQ08665.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO 512] Length = 726 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 231 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 261 >gi|259416112|ref|ZP_05740032.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter sp. TrichCH4B] gi|259347551|gb|EEW59328.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter sp. TrichCH4B] Length = 778 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 23/161 (14%) Query: 10 RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64 +NVS++DA++ +L+ GQ A L I+ A+A + + + LF GP G Sbjct: 454 KNVSKDDAEVLKDLEASLKRVVFGQDAAIDALSSAIKLARAGLREPEKPIGNYLFAGPTG 513 Query: 65 LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107 +GKT +A+ +A LGV R P D LLT+ D+ Sbjct: 514 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 573 Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 VL +DEI + V IL M++ QL G + R+V Sbjct: 574 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRTVNFRNV 614 >gi|313126645|ref|YP_004036915.1| ATPase AAA [Halogeometricum borinquense DSM 11551] gi|312293010|gb|ADQ67470.1| AAA family ATPase, CDC48 subfamily [Halogeometricum borinquense DSM 11551] Length = 718 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 12/99 (12%) Query: 4 REGLLSRNVSQ----EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56 ++G +SR V+ D D T E+ G E ++ IE + E H Sbjct: 165 KQGTVSRVVTSVSGGGDGDSDKPTGVTYEDIGGLDEELDLVREMIELPLSEPEVFAHLGV 224 Query: 57 -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ VA E+ F + SGP I Sbjct: 225 DPPKGVLLHGPPGTGKTLIAKAVATEVDATFITISGPEI 263 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ +A E VNF +GP Sbjct: 496 VLLHGPPGTGKTLLARAIAGESEVNFIHVAGP 527 >gi|224087194|ref|XP_002189153.1| PREDICTED: similar to lon peptidase 1, mitochondrial [Taeniopygia guttata] Length = 921 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 33/209 (15%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTT 69 S+E+ +++ + E+ G + + FI ++ R +L F GPPG+GKT+ Sbjct: 441 KCSEENLELARAQEVLEEDHYGMDDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTS 500 Query: 70 LAQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDE 113 +A+ +AR L FR + G V A G + L + + ++ IDE Sbjct: 501 IARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDE 560 Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 + ++ S + E+L P LD + V ++LS+ I Sbjct: 561 VDKIGRGYQGDPSSALLELLDPEQNSNFLDHYL-------DVPVDLSKVLFICTANVTET 613 Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + PL+DR + I ++ Y E+ I +R Sbjct: 614 IPEPLRDRMEV-INVSGYVAEEKLAIAER 641 >gi|195038301|ref|XP_001990598.1| GH18155 [Drosophila grimshawi] gi|193894794|gb|EDV93660.1| GH18155 [Drosophila grimshawi] Length = 607 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 364 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 423 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 424 IFIDEIDAL 432 >gi|123968548|ref|YP_001009406.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601] gi|123198658|gb|ABM70299.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601] Length = 584 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL +GPPG GKT LA+ +A E GV F S S V A + L + +++ + Sbjct: 170 VLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCI 229 Query: 109 LFIDEIHRL 117 +FIDEI + Sbjct: 230 IFIDEIDSI 238 >gi|159043936|ref|YP_001532730.1| ATP-dependent protease ATP-binding subunit ClpX [Dinoroseobacter shibae DFL 12] gi|189044133|sp|A8LJA7|CLPX_DINSH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157911696|gb|ABV93129.1| ATP-dependent Clp protease [Dinoroseobacter shibae DFL 12] Length = 419 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 20/92 (21%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100 K IE AK+ ++L +GP G GKT LAQ +AR L V F + +AG + + Sbjct: 102 KTDIELAKS------NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDV 155 Query: 101 TNL--------------EDRDVLFIDEIHRLS 118 N+ R +++IDE+ +++ Sbjct: 156 ENIILKLLQASEYNVERAQRGIVYIDEVDKIT 187 >gi|114771110|ref|ZP_01448550.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium HTCC2255] gi|114548392|gb|EAU51278.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium HTCC2255] Length = 420 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 113 NILLVGPTGCGKTLLAQTLARVIDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNV 172 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDE+ +++ Sbjct: 173 ERAERGIVYIDEVDKIT 189 >gi|49246397|gb|AAT58330.1| FtsH-like protein [Lophopyrum elongatum] gi|49246413|gb|AAT58338.1| FtsH-like protein [Triticum urartu] gi|49246429|gb|AAT58346.1| FtsH-like protein [Triticum urartu] gi|49246431|gb|AAT58347.1| FtsH-like protein [Aegilops tauschii] gi|49246433|gb|AAT58348.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246447|gb|AAT58355.1| FtsH-like protein [Triticum monococcum] gi|49246449|gb|AAT58356.1| FtsH-like protein [Triticum monococcum] gi|49246453|gb|AAT58358.1| FtsH-like protein [Aegilops tauschii] gi|49246459|gb|AAT58361.1| FtsH-like protein [Aegilops tauschii] Length = 151 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 57 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 87 >gi|49246405|gb|AAT58334.1| FtsH-like protein [Triticum urartu] gi|49246419|gb|AAT58341.1| FtsH-like protein [Aegilops tauschii] gi|49246423|gb|AAT58343.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246425|gb|AAT58344.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246437|gb|AAT58350.1| FtsH-like protein [Triticum urartu] gi|49246441|gb|AAT58352.1| FtsH-like protein [Triticum urartu] gi|49246443|gb|AAT58353.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246445|gb|AAT58354.1| FtsH-like protein [Triticum urartu] gi|49246451|gb|AAT58357.1| FtsH-like protein [Aegilops tauschii] gi|49246455|gb|AAT58359.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] Length = 150 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 56 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 86 >gi|58336617|ref|YP_193202.1| cell division protein [Lactobacillus acidophilus NCFM] gi|58253934|gb|AAV42171.1| cell division protein [Lactobacillus acidophilus NCFM] Length = 718 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E V F S SG V A + L +N + + Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFSNAKKNAPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|55377649|ref|YP_135499.1| cell division control protein 48 [Haloarcula marismortui ATCC 43049] gi|55230374|gb|AAV45793.1| cell division control protein 48 [Haloarcula marismortui ATCC 43049] Length = 705 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E VNF +GP I G+ + L +R + Sbjct: 488 ILLYGPPGTGKTLLARAVAGESDVNFIHVAGPEIMDRYVGESEEAVRELFERARQTAPSI 547 Query: 109 LFIDEIHRLS 118 +F+DEI ++ Sbjct: 548 IFLDEIDAIA 557 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA---KAGDLAALLTNLEDRD-----V 108 VL GPPG GKT +A+ VA E+ F + SGP I K L E + + Sbjct: 231 VLLHGPPGTGKTLIARAVANEVDAYFDTISGPEIVSKYKGESEERLREAFEKAEANAPAI 290 Query: 109 LFIDEIHRLS 118 LF+DEI ++ Sbjct: 291 LFVDEIDSIA 300 >gi|72163294|ref|YP_290951.1| Mername-AA223 peptidase [Thermobifida fusca YX] gi|71917026|gb|AAZ56928.1| Mername-AA223 peptidase. Metallo peptidase. MEROPS family M41 [Thermobifida fusca YX] Length = 682 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 200 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 230 >gi|29374906|ref|NP_814059.1| cell division protein FtsH [Enterococcus faecalis V583] gi|256618325|ref|ZP_05475171.1| peptidase M41 [Enterococcus faecalis ATCC 4200] gi|256855219|ref|ZP_05560580.1| cell division protein FtsH [Enterococcus faecalis T8] gi|257081552|ref|ZP_05575913.1| peptidase M41 [Enterococcus faecalis E1Sol] gi|257084200|ref|ZP_05578561.1| cell division protein FtsH [Enterococcus faecalis Fly1] gi|257088027|ref|ZP_05582388.1| peptidase M41 [Enterococcus faecalis D6] gi|257417630|ref|ZP_05594624.1| peptidase M41 [Enterococcus faecalis AR01/DG] gi|257418645|ref|ZP_05595639.1| peptidase M41 [Enterococcus faecalis T11] gi|29342364|gb|AAO80130.1| cell division protein FtsH [Enterococcus faecalis V583] gi|256597852|gb|EEU17028.1| peptidase M41 [Enterococcus faecalis ATCC 4200] gi|256709732|gb|EEU24779.1| cell division protein FtsH [Enterococcus faecalis T8] gi|256989582|gb|EEU76884.1| peptidase M41 [Enterococcus faecalis E1Sol] gi|256992230|gb|EEU79532.1| cell division protein FtsH [Enterococcus faecalis Fly1] gi|256996057|gb|EEU83359.1| peptidase M41 [Enterococcus faecalis D6] gi|257159458|gb|EEU89418.1| peptidase M41 [Enterococcus faecalis ARO1/DG] gi|257160473|gb|EEU90433.1| peptidase M41 [Enterococcus faecalis T11] Length = 718 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 253 >gi|20807813|ref|NP_622984.1| ATPase of the AAA+ class [Thermoanaerobacter tengcongensis MB4] gi|20516372|gb|AAM24588.1| ATPases of the AAA+ class [Thermoanaerobacter tengcongensis MB4] Length = 298 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 65/283 (22%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD------HVLFVGPPGLGKTTLAQV 73 SL+ ++E ++ A S L++ K + E L H++F G PG GKTT+A++ Sbjct: 43 SLIGLHKVKEIIYEIYAFSQLQM-----KRKKEGLATDPIVLHMIFKGNPGTGKTTVARI 97 Query: 74 VAREL-GVNFRSTSGPVIAKAGDLAA---------LLTNLEDR--DVLFIDEIHRLSIIV 121 + + L G+ V + DL + N++ +LF+DE + L+ Sbjct: 98 LGKLLKGIGVLEKGHVVEVERADLVGEYIGHTAHRVRENVKKALGGILFVDEAYSLA--- 154 Query: 122 EEILYPAMEDF---QLDLMVGEGPSARSVKINLSRFTLIAATTRVG----LLTNP-LQDR 173 +DF +D +V E R ++F LI A + L TNP L+ R Sbjct: 155 ----RGGEKDFGKEAIDTLVKEMEDNR------NKFILILAGYKYEMEYFLNTNPGLRSR 204 Query: 174 FGIPIRLNF--YEIEDLKTIVQRGAKLTGLAVTDEAACEI--------AMRSRGTPRIAG 223 F PI+++F Y IE+L I + K +T+ A ++ A R G R+ Sbjct: 205 F--PIQIDFPDYTIEELLQIAEVMVKNRQYKLTESAKRKLMKILIKNDASREMGNARM-- 260 Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266 VR+ E A K R + + + D + D +D+R Sbjct: 261 -----VRNIIEKAIRKQAVRVLNKVNITKE--DLITIDSIDIR 296 >gi|332669078|ref|YP_004452086.1| ATP-dependent metalloprotease FtsH [Cellulomonas fimi ATCC 484] gi|332338116|gb|AEE44699.1| ATP-dependent metalloprotease FtsH [Cellulomonas fimi ATCC 484] Length = 684 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 7/80 (8%) Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGK 67 VS+E ++ ++E +E +K F+ E AK +A + VL GPPG GK Sbjct: 158 VSKESPQVTFADVAGVDE---ALEELQEIKEFLSEPAKFQAVGAKIPKGVLLYGPPGTGK 214 Query: 68 TTLAQVVARELGVNFRSTSG 87 T LA+ VA E GV F S SG Sbjct: 215 TLLARAVAGEAGVPFYSISG 234 >gi|313139717|ref|ZP_07801910.1| AAA family ATPase [Bifidobacterium bifidum NCIMB 41171] gi|313132227|gb|EFR49844.1| AAA family ATPase [Bifidobacterium bifidum NCIMB 41171] Length = 420 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 20/118 (16%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIE-----AAKARA---EALDHVLFVGPPGLGKT 68 AD SL T F G + K IE +A+ RA + + V+F G PG GKT Sbjct: 164 ADPSL----TFAAFGGYERVIARAKELIETQLGNSAQMRAIGAKPIKGVIFTGAPGTGKT 219 Query: 69 TLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDVLFIDEIHRLS 118 LA+++A F SGP I GD L + R ++F DEI ++ Sbjct: 220 HLARIIANVADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQSDKRAIIFFDEIDSIA 277 >gi|291534756|emb|CBL07868.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis M50/1] Length = 604 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 VFIDEI 266 >gi|291518669|emb|CBK73890.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Butyrivibrio fibrisolvens 16/4] Length = 428 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 29/130 (22%) Query: 18 DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA----------LDHVLFVGP 62 +I+L +P ++ F GQ EA L V + R A +VL +GP Sbjct: 61 EINLQKPEDMKAFLDQYVIGQDEAKKVLSVAVYNHYKRIMANPDDIDVELQKSNVLMLGP 120 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDV 108 G GKT LAQ +AR LGV F + +AG D+ +L L + + Sbjct: 121 TGSGKTLLAQTLARVLGVPFAIADATTLTEAGYVGEDVENILLKLIQAAEFDIKKAEIGI 180 Query: 109 LFIDEIHRLS 118 ++IDEI +++ Sbjct: 181 VYIDEIDKIT 190 >gi|293388119|ref|ZP_06632646.1| cell division protein FtsH [Enterococcus faecalis S613] gi|312909257|ref|ZP_07768114.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO 516] gi|291082495|gb|EFE19458.1| cell division protein FtsH [Enterococcus faecalis S613] gi|311290499|gb|EFQ69055.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO 516] Length = 725 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 230 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 260 >gi|281360138|ref|NP_001163522.1| katanin p60-like 1, isoform D [Drosophila melanogaster] gi|281360146|ref|NP_001163526.1| katanin p60-like 1, isoform H [Drosophila melanogaster] gi|272476827|gb|ACZ94821.1| katanin p60-like 1, isoform D [Drosophila melanogaster] gi|272476831|gb|ACZ94825.1| katanin p60-like 1, isoform H [Drosophila melanogaster] Length = 609 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 366 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 425 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 426 IFIDEIDAL 434 >gi|241764197|ref|ZP_04762231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax delafieldii 2AN] gi|241366474|gb|EER60978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax delafieldii 2AN] Length = 421 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 117 NILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYEV 176 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 ERAQRGIVYIDEIDKIS 193 >gi|294892167|ref|XP_002773928.1| cell division cycle protein 48, putative [Perkinsus marinus ATCC 50983] gi|239879132|gb|EER05744.1| cell division cycle protein 48, putative [Perkinsus marinus ATCC 50983] Length = 605 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108 +L GPPG KT LA+ VA E +NF S GP + GD A + +L + V Sbjct: 370 ILLYGPPGCSKTMLARAVATETEMNFISIKGPELFSKWVGDSEAKVRDLFRKARQAAPTV 429 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 430 VFIDEV 435 >gi|229546905|ref|ZP_04435630.1| cell division protein FtsH [Enterococcus faecalis TX1322] gi|229307833|gb|EEN73820.1| cell division protein FtsH [Enterococcus faecalis TX1322] Length = 726 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 231 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 261 >gi|256833317|ref|YP_003162044.1| ATP-dependent metalloprotease FtsH [Jonesia denitrificans DSM 20603] gi|256686848|gb|ACV09741.1| ATP-dependent metalloprotease FtsH [Jonesia denitrificans DSM 20603] Length = 677 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F+ E AK +A + VL GPPG GKT LA+ VA E GV F S SG Sbjct: 176 VEELREIKEFLSEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233 >gi|227486248|ref|ZP_03916564.1| ATP dependent protease ATP-binding subunit [Anaerococcus lactolyticus ATCC 51172] gi|227235659|gb|EEI85674.1| ATP dependent protease ATP-binding subunit [Anaerococcus lactolyticus ATCC 51172] Length = 404 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 29/132 (21%) Query: 16 DADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD----------HVLFV 60 D D L +P+ ++ + GQ +A L V + R + + ++L + Sbjct: 55 DFDFKLSKPKDIKAYLDSYVIGQEDAKKTLSVAVYNHYKRITSNEDDSEVELQKSNILML 114 Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD------ 107 GP G GKT LAQ +AR+L V F + +AG + + N+ D D Sbjct: 115 GPTGSGKTLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIEAAEL 174 Query: 108 -VLFIDEIHRLS 118 ++++DEI +++ Sbjct: 175 GIIYVDEIDKIT 186 >gi|240146417|ref|ZP_04745018.1| cell division protein FtsH [Roseburia intestinalis L1-82] gi|257201465|gb|EEU99749.1| cell division protein FtsH [Roseburia intestinalis L1-82] Length = 604 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 VFIDEI 266 >gi|225627582|ref|ZP_03785619.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ceti str. Cudo] gi|254706706|ref|ZP_05168534.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella pinnipedialis M163/99/10] gi|254710186|ref|ZP_05171997.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella pinnipedialis B2/94] gi|254714184|ref|ZP_05175995.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti M644/93/1] gi|254717619|ref|ZP_05179430.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti M13/05/1] gi|256031680|ref|ZP_05445294.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella pinnipedialis M292/94/1] gi|256159836|ref|ZP_05457569.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti M490/95/1] gi|256255082|ref|ZP_05460618.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti B1/94] gi|260168814|ref|ZP_05755625.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella sp. F5/99] gi|261219455|ref|ZP_05933736.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti M13/05/1] gi|261222275|ref|ZP_05936556.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti B1/94] gi|261314168|ref|ZP_05953365.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella pinnipedialis M163/99/10] gi|261317743|ref|ZP_05956940.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella pinnipedialis B2/94] gi|261321951|ref|ZP_05961148.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti M644/93/1] gi|261758299|ref|ZP_06002008.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp. F5/99] gi|265988774|ref|ZP_06101331.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella pinnipedialis M292/94/1] gi|265998239|ref|ZP_06110796.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti M490/95/1] gi|225617587|gb|EEH14632.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ceti str. Cudo] gi|260920859|gb|EEX87512.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti B1/94] gi|260924544|gb|EEX91112.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti M13/05/1] gi|261294641|gb|EEX98137.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti M644/93/1] gi|261296966|gb|EEY00463.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella pinnipedialis B2/94] gi|261303194|gb|EEY06691.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella pinnipedialis M163/99/10] gi|261738283|gb|EEY26279.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp. F5/99] gi|262552707|gb|EEZ08697.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti M490/95/1] gi|264660971|gb|EEZ31232.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella pinnipedialis M292/94/1] Length = 424 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|242012194|ref|XP_002426820.1| ATP-dependent metalloprotease, putative [Pediculus humanus corporis] gi|212511027|gb|EEB14082.1| ATP-dependent metalloprotease, putative [Pediculus humanus corporis] Length = 559 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKA--RAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA LK +E K + AL VL VGPPG GKT LA+ VA E Sbjct: 107 TFEDVKGVDEAKQELKEVVEFLKNPNKFSALGGKLPKGVLLVGPPGTGKTLLARAVAGEA 166 Query: 79 GVNFRSTSGP 88 V F +GP Sbjct: 167 RVPFFHAAGP 176 >gi|154484850|ref|ZP_02027298.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC 27560] gi|149733803|gb|EDM49922.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC 27560] Length = 604 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 VFIDEI 266 >gi|148642702|ref|YP_001273215.1| cell division protein CDC48 [Methanobrevibacter smithii ATCC 35061] gi|148551719|gb|ABQ86847.1| cell division control protein Cdc48, AAA+ ATPase family [Methanobrevibacter smithii ATCC 35061] Length = 730 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 24/124 (19%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 + E+ G + ++ IE R E D VL GPPG GKT LA+ VA E Sbjct: 201 SYEDIGGLKDEVKKVREMIEIPLKRPELFDKLGIAPPKGVLMHGPPGTGKTLLAKAVASE 260 Query: 78 LGVNFRSTSGPVIAK---AGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAM 129 +F + +GP I G L E+ + ++FIDE+ ++ P Sbjct: 261 SDAHFIAINGPEIMSKYVGGSEENLREYFEEAEENAPSIIFIDELDAIA--------PKR 312 Query: 130 EDFQ 133 ED Q Sbjct: 313 EDTQ 316 >gi|125596557|gb|EAZ36337.1| hypothetical protein OsJ_20663 [Oryza sativa Japonica Group] Length = 937 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108 +L GPPG GKT LA+ +A E G NF S +G + A L L + R + Sbjct: 685 ILLFGPPGTGKTLLAKALATEAGANFISITGSNLTSKWFGDAEKLTKALFSFASRLAPVI 744 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 745 IFVDEVDSL 753 >gi|38606517|emb|CAE05991.3| OSJNBa0016O02.1 [Oryza sativa Japonica Group] Length = 584 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 29/53 (54%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 +E S L + K A+ VL VGPPG GKT LA+ VA E G+ F S S Sbjct: 310 IEVVSCLHGSLNYKKLGAKLPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVS 362 >gi|21357333|ref|NP_649586.1| katanin p60-like 1, isoform A [Drosophila melanogaster] gi|281360142|ref|NP_001163524.1| katanin p60-like 1, isoform F [Drosophila melanogaster] gi|15291493|gb|AAK93015.1| GH23455p [Drosophila melanogaster] gi|23175931|gb|AAF51955.2| katanin p60-like 1, isoform A [Drosophila melanogaster] gi|220945628|gb|ACL85357.1| CG1193-PA [synthetic construct] gi|220955422|gb|ACL90254.1| CG1193-PA [synthetic construct] gi|272476829|gb|ACZ94823.1| katanin p60-like 1, isoform F [Drosophila melanogaster] Length = 605 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 362 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 421 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 422 IFIDEIDAL 430 >gi|28572441|ref|NP_789221.1| ATP-dependent protease ATP-binding subunit [Tropheryma whipplei TW08/27] gi|46576526|sp|Q83MI6|CLPX_TROW8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|28410572|emb|CAD66959.1| ATP dependent Clp Protease ATP binding subunit [Tropheryma whipplei TW08/27] Length = 423 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA-----ALLTNLEDRD--- 107 ++L +GP G GKT LAQ +AR L V F + +AG + LL L+D D Sbjct: 120 NILLIGPTGCGKTYLAQTLARMLRVPFAVADATALTEAGYVGDDVENVLLKLLQDADFDI 179 Query: 108 ------VLFIDEIHRLS 118 ++ IDEI ++S Sbjct: 180 TRAEAGIVCIDEIDKIS 196 >gi|86138022|ref|ZP_01056597.1| ATP-dependent Zn protease [Roseobacter sp. MED193] gi|85825049|gb|EAQ45249.1| ATP-dependent Zn protease [Roseobacter sp. MED193] Length = 703 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 48/108 (44%), Gaps = 16/108 (14%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDH------VLFVGPPGLGKTTLAQVVA 75 P L + G S +K + +A RA L+ VL GPPG GKT A +A Sbjct: 253 NPEALNQVKGLGPTSSPIKQLAQDMRAWRANELEWSEIPRGVLLSGPPGTGKTFTASKLA 312 Query: 76 RELGVNFRSTSGPVIAKAGDLAALLTNL-----EDRD----VLFIDEI 114 +G +F +TS + G L L + E RD VLFIDEI Sbjct: 313 EAVGGHFIATSYADWQREGHLGDFLAAMYRCFQEARDNAPSVLFIDEI 360 >gi|53723666|ref|YP_103111.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia mallei ATCC 23344] gi|67642017|ref|ZP_00440780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei GB8 horse 4] gi|121600417|ref|YP_993273.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia mallei SAVP1] gi|124383380|ref|YP_001029283.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia mallei NCTC 10229] gi|126448291|ref|YP_001080783.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia mallei NCTC 10247] gi|166998704|ref|ZP_02264558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei PRL-20] gi|254177862|ref|ZP_04884517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei ATCC 10399] gi|254200062|ref|ZP_04906428.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei FMH] gi|254206397|ref|ZP_04912749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei JHU] gi|254358193|ref|ZP_04974466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei 2002721280] gi|61211429|sp|Q62JK8|CLPX_BURMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214762|sp|A3MKJ7|CLPX_BURM7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214763|sp|A2SBG4|CLPX_BURM9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214764|sp|A1V4X0|CLPX_BURMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|52427089|gb|AAU47682.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei ATCC 23344] gi|121229227|gb|ABM51745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei SAVP1] gi|124291400|gb|ABN00669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei NCTC 10229] gi|126241161|gb|ABO04254.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei NCTC 10247] gi|147749658|gb|EDK56732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei FMH] gi|147753840|gb|EDK60905.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei JHU] gi|148027320|gb|EDK85341.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei 2002721280] gi|160698901|gb|EDP88871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei ATCC 10399] gi|238523065|gb|EEP86506.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei GB8 horse 4] gi|243065059|gb|EES47245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei PRL-20] Length = 423 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 EKAQRGIVYIDEIDKIS 192 >gi|12082995|gb|AAG48698.1|AF323913_1 intermembrane space AAA protease IAP-1 [Neurospora crassa] gi|12082997|gb|AAG48699.1|AF323914_1 intermembrane space AAA protease IAP-1 [Neurospora crassa] gi|21622385|emb|CAD37039.1| AAA protease IAP-1 (mitochondrial intermembrane space) [Neurospora crassa] Length = 738 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F + SG Sbjct: 291 VLLVGPPGTGKTLLARAVAGEAGVPFFNMSG 321 >gi|299743241|ref|XP_001835627.2| ATPase [Coprinopsis cinerea okayama7#130] gi|298405567|gb|EAU86198.2| ATPase [Coprinopsis cinerea okayama7#130] Length = 360 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-----AKAGDLAALLTNLEDR---DV 108 VL GPPG GKT +A+ +A+E G F + + V+ ++ L A L +L + + Sbjct: 121 VLLFGPPGCGKTMMAKALAKESGATFINIAASVLTNKWYGESNKLVAGLFSLARKVQPSI 180 Query: 109 LFIDEI 114 +FIDEI Sbjct: 181 IFIDEI 186 >gi|295090291|emb|CBK76398.1| ATP-dependent metalloprotease FtsH [Clostridium cf. saccharolyticum K10] Length = 620 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +T + GQ EA LK ++ A+ A L VGPPG GKT LA+ VA E Sbjct: 167 KTFADVAGQEEAKDALKEIVDFLHNPGKYAEIGATLPKGALLVGPPGTGKTLLAKAVAGE 226 Query: 78 LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 V F S SG + A + L ++ ++FIDEI Sbjct: 227 AHVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCIVFIDEI 271 >gi|257088704|ref|ZP_05583065.1| peptidase M41 [Enterococcus faecalis CH188] gi|256997516|gb|EEU84036.1| peptidase M41 [Enterococcus faecalis CH188] Length = 718 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 253 >gi|229550494|ref|ZP_04439219.1| cell division protein FtsH [Enterococcus faecalis ATCC 29200] gi|307286956|ref|ZP_07567031.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0109] gi|312901063|ref|ZP_07760352.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0470] gi|229304351|gb|EEN70347.1| cell division protein FtsH [Enterococcus faecalis ATCC 29200] gi|306501902|gb|EFM71191.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0109] gi|311291809|gb|EFQ70365.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0470] gi|315026777|gb|EFT38709.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2137] gi|315028816|gb|EFT40748.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4000] gi|315147113|gb|EFT91129.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4244] gi|315165843|gb|EFU09860.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1302] gi|315171402|gb|EFU15419.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1342] gi|315172635|gb|EFU16652.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1346] gi|315582079|gb|EFU94270.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0309A] Length = 726 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 231 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 261 >gi|227520050|ref|ZP_03950099.1| cell division protein FtsH [Enterococcus faecalis TX0104] gi|227555911|ref|ZP_03985958.1| cell division protein FtsH [Enterococcus faecalis HH22] gi|307276454|ref|ZP_07557577.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2134] gi|307278664|ref|ZP_07559734.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0860] gi|227072598|gb|EEI10561.1| cell division protein FtsH [Enterococcus faecalis TX0104] gi|227174968|gb|EEI55940.1| cell division protein FtsH [Enterococcus faecalis HH22] gi|306504724|gb|EFM73924.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0860] gi|306506934|gb|EFM76081.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2134] gi|315151134|gb|EFT95150.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0012] gi|315168158|gb|EFU12175.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1341] gi|315573573|gb|EFU85764.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0309B] Length = 725 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 230 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 260 >gi|224282562|ref|ZP_03645884.1| Vesicle-fusing ATPase [Bifidobacterium bifidum NCIMB 41171] gi|310287024|ref|YP_003938282.1| ATPase family associated with various cellular activities (AAA) [Bifidobacterium bifidum S17] gi|309250960|gb|ADO52708.1| ATPase family associated with various cellular activities (AAA) [Bifidobacterium bifidum S17] Length = 402 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 20/118 (16%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIE-----AAKARA---EALDHVLFVGPPGLGKT 68 AD SL T F G + K IE +A+ RA + + V+F G PG GKT Sbjct: 146 ADPSL----TFAAFGGYERVIARAKELIETQLGNSAQMRAIGAKPIKGVIFTGAPGTGKT 201 Query: 69 TLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDVLFIDEIHRLS 118 LA+++A F SGP I GD L + R ++F DEI ++ Sbjct: 202 HLARIIANVADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQSDKRAIIFFDEIDSIA 259 >gi|224025974|ref|ZP_03644340.1| hypothetical protein BACCOPRO_02725 [Bacteroides coprophilus DSM 18228] gi|224019210|gb|EEF77208.1| hypothetical protein BACCOPRO_02725 [Bacteroides coprophilus DSM 18228] Length = 386 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103 +++ VG G GKT LA+ +A+ L V F V+ +AG D+ ++LT N+ Sbjct: 86 NIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQAADYNV 145 Query: 104 E--DRDVLFIDEIHRLS 118 E +R ++FIDEI +++ Sbjct: 146 EEAERGIVFIDEIDKIA 162 >gi|218134340|ref|ZP_03463144.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC 43243] gi|217989725|gb|EEC55736.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC 43243] Length = 476 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 73 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 132 Query: 109 LFIDEI 114 +FIDEI Sbjct: 133 VFIDEI 138 >gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST] gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST] Length = 327 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 NV + RP L + E + FI + E L H+LF GPPG GKT+ Sbjct: 4 NVKSNLPWVEKYRPAKLNDLISHEEIIGTINKFI-----KEEQLPHLLFYGPPGTGKTST 58 Query: 71 AQVVAREL 78 AR+L Sbjct: 59 ILACARQL 66 >gi|120601143|ref|YP_965543.1| response regulator receiver protein [Desulfovibrio vulgaris DP4] gi|120561372|gb|ABM27116.1| response regulator receiver protein [Desulfovibrio vulgaris DP4] Length = 682 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 53/221 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98 + FVGPPG+GKT++ Q +A+ + F R+ +G + + + A Sbjct: 248 LCFVGPPGVGKTSVGQAIAKAMNRPFVRLSLADLRDEAELRGHRRTYAGAMPGRI--MQA 305 Query: 99 LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 L T V +DE+ ++ ++ + E+L P D LD V + + Sbjct: 306 LRTAGVRNPVFMLDEMDKMGQDARSDPAMALLELLDPEQNDRFLDRYV-------DLPFD 358 Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDE 206 LS IA + PL DR + + E E + ++ R + GL Sbjct: 359 LSEVMFIATANDTSRMRGPLLDRLEVVPFAGYSEDEKADIASRFLLPRQLREHGLV---- 414 Query: 207 AACEIAMRSRGTPRIAGRLLRR-VRDFAEVAHAKTITREIA 246 P +A LRR VRD+ + A + + RE+A Sbjct: 415 ---------HPRPVVADEALRRIVRDYTDEAGVRGLERELA 446 >gi|113953333|ref|YP_729587.1| cell division protein FtsH [Synechococcus sp. CC9311] gi|113880684|gb|ABI45642.1| cell division protein FtsH [Synechococcus sp. CC9311] Length = 617 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ VA E GV F S SG Sbjct: 198 CLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228 >gi|148652117|ref|YP_001279210.1| ATP-dependent protease ATP-binding subunit ClpX [Psychrobacter sp. PRwf-1] gi|172048458|sp|A5WC69|CLPX_PSYWF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|148571201|gb|ABQ93260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter sp. PRwf-1] Length = 425 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ D DV Sbjct: 128 NILLIGPTGSGKTLLAQTLARMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYDV 187 Query: 109 -------LFIDEIHRLS 118 +++DEI ++S Sbjct: 188 EKAEQGIIYVDEIDKIS 204 >gi|10176992|dbj|BAB10224.1| unnamed protein product [Arabidopsis thaliana] Length = 469 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 + P+ EE + A SN K + + +A ++L+ GPPG GK+T+ +A L N Sbjct: 210 MDPKKKEEIVNDLIAFSNGKEYYKKI-GKAWKRGYLLY-GPPGTGKSTMISAMANLLNYN 267 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 + +L LLT + ++ I++I Sbjct: 268 IYDLELTAVKNNSELKKLLTATSSKSIIVIEDI 300 >gi|89073231|ref|ZP_01159761.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp. SKA34] gi|89050941|gb|EAR56405.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp. SKA34] Length = 426 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|258568646|ref|XP_002585067.1| ribosome biogenesis ATPase RIX7 [Uncinocarpus reesii 1704] gi|237906513|gb|EEP80914.1| ribosome biogenesis ATPase RIX7 [Uncinocarpus reesii 1704] Length = 741 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 516 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 547 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A A ELGV F S S P I Sbjct: 211 VLLHGPPGCGKTLIANAFAAELGVPFISISAPSI 244 >gi|226355419|ref|YP_002785159.1| ATP-dependent protease La [Deinococcus deserti VCD115] gi|226317409|gb|ACO45405.1| putative ATP-dependent protease La [Deinococcus deserti VCD115] Length = 820 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 44/186 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98 ++F GPPG+GKT++AQ +AR LG + R+ G + + + Sbjct: 365 LVFTGPPGVGKTSIAQSIARALGRKYVRIALGGARDESDIRGHRRTYIGAMPGRL--IQG 422 Query: 99 LLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150 + T V+ +DE+ +L + E+L PA D +G V + Sbjct: 423 IRTAGTKNPVILLDEVDKLGTSYQGDPSSALLEVLDPAQNQHFTDHYLG-------VPFD 475 Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGL 201 LS IA + L DR + ++ E E L + + Q G K + Sbjct: 476 LSEVMFIATANYPEQIPPALMDRMEVIDFSSYIEQEKLEIAKRYLLPRQLTQNGLKPNQI 535 Query: 202 AVTDEA 207 + TD A Sbjct: 536 SFTDAA 541 >gi|167751542|ref|ZP_02423669.1| hypothetical protein EUBSIR_02543 [Eubacterium siraeum DSM 15702] gi|167655350|gb|EDR99479.1| hypothetical protein EUBSIR_02543 [Eubacterium siraeum DSM 15702] Length = 661 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL +GPPG GKT LA+ VA E V F S SG + G A+ + +L D+ + Sbjct: 218 VLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKHTPSI 277 Query: 109 LFIDEI 114 +FIDEI Sbjct: 278 IFIDEI 283 >gi|119496141|ref|XP_001264844.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Neosartorya fischeri NRRL 181] gi|119413006|gb|EAW22947.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Neosartorya fischeri NRRL 181] Length = 736 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 513 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 544 Score = 38.9 bits (89), Expect = 1.00, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 21/104 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108 VL GPPG GKT +A A ELGV F S P I +G+ AL + E+ + Sbjct: 209 VLLHGPPGCGKTMIANAFAAELGVPFIPISAPSIVSGMSGESEKALREHFEEARRLAPCL 268 Query: 109 LFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGE 140 +FIDEI ++ IV ++L M+D LD G+ Sbjct: 269 IFIDEIDAITPKRESAQREMEKRIVAQLLT-CMDDLALDKTDGK 311 >gi|90579277|ref|ZP_01235087.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14] gi|90440110|gb|EAS65291.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14] Length = 426 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|146302257|ref|YP_001196848.1| DNA polymerase III, subunits gamma and tau [Flavobacterium johnsoniae UW101] gi|146156675|gb|ABQ07529.1| DNA polymerase III, subunits gamma and tau [Flavobacterium johnsoniae UW101] Length = 361 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 93/237 (39%), Gaps = 57/237 (24%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80 RP+T ++ GQ + L IE+ A AL LF GP G+GKTT A+++AR++ Sbjct: 12 RPQTFKDVVGQKAITNTLLNAIES-NHLASAL---LFTGPRGVGKTTCARILARKINQPG 67 Query: 81 ------NFRSTSGPVIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVEEI 124 +F + A + + + NL D+ V IDE+H LS Sbjct: 68 YDDPTEDFAFNVFELDAASNNSVDDIRNLIDQVRIPPQTGQYKVYIIDEVHMLSSAA--- 124 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 F L E P ++ I +A T + +L P L+ + Sbjct: 125 -------FNAFLKTLEEPPKHAIFI-------LATTEKHKIL----------PTILSRCQ 160 Query: 185 IEDLKTIVQRGAK--------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 I D K I + AK G+ D+A IA ++ G R A + RV + Sbjct: 161 IFDFKRITVKDAKEHLADVAESQGINFEDDALHIIAQKADGAMRDALSIFDRVVSYC 217 >gi|49246427|gb|AAT58345.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] Length = 153 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 57 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 87 >gi|46123299|ref|XP_386203.1| hypothetical protein FG06027.1 [Gibberella zeae PH-1] Length = 390 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP TL++ +G + + + FIE + L H+L GPPG GKT+ +AR + Sbjct: 49 RPTTLDDVSGHQDILATINKFIEQNR-----LPHLLLYGPPGTGKTSTILALARRI 99 >gi|330470513|ref|YP_004408256.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032] gi|328813484|gb|AEB47656.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032] Length = 671 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 208 VLLFGPPGTGKTLLARAVAGEAGVPFYSISG 238 >gi|330817270|ref|YP_004360975.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli BSR3] gi|327369663|gb|AEA61019.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli BSR3] Length = 423 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 DKAQRGIVYIDEIDKIS 192 >gi|315652556|ref|ZP_07905537.1| cell division protein FtsH [Eubacterium saburreum DSM 3986] gi|315485185|gb|EFU75586.1| cell division protein FtsH [Eubacterium saburreum DSM 3986] Length = 603 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 201 ILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 VFIDEI 266 >gi|312796429|ref|YP_004029351.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX [Burkholderia rhizoxinica HKI 454] gi|312168204|emb|CBW75207.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX [Burkholderia rhizoxinica HKI 454] Length = 410 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 EKAQRGIVYIDEIDKIS 192 >gi|307135876|gb|ADN33742.1| ATP-dependent clp protease ATP-binding subunit clpx [Cucumis melo subsp. melo] Length = 571 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 23/119 (19%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 SL RP T + F + +A + KV +E + ++L +GP G GKT LA+ +AR + Sbjct: 194 SLQRP-TGDAFNNKADAADDDKVELEKS--------NILLMGPTGSGKTLLAKTLARFVN 244 Query: 80 VNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDEIHRLSIIVEEI 124 V F + +AG D+ ++L L + +++IDE+ +++ E + Sbjct: 245 VPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESL 303 >gi|312904626|ref|ZP_07763781.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0635] gi|310631978|gb|EFQ15261.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0635] gi|315036602|gb|EFT48534.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0027] gi|315153551|gb|EFT97567.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0031] gi|315158586|gb|EFU02603.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0312] gi|329577260|gb|EGG58724.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1467] Length = 726 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 231 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 261 >gi|307268518|ref|ZP_07549893.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4248] gi|312952665|ref|ZP_07771529.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0102] gi|306515179|gb|EFM83719.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4248] gi|310629453|gb|EFQ12736.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0102] gi|315032985|gb|EFT44917.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0017] gi|315145395|gb|EFT89411.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2141] gi|315156269|gb|EFU00286.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0043] gi|315160785|gb|EFU04802.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0645] gi|315579384|gb|EFU91575.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0630] gi|327534062|gb|AEA92896.1| cell division protein FtsH [Enterococcus faecalis OG1RF] Length = 725 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 230 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 260 >gi|302907531|ref|XP_003049666.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256730602|gb|EEU43953.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 825 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F SG V A + L T + + + Sbjct: 379 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEIFVGVGAKRVRELFTAAKSKSPAI 438 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 439 VFIDEL 444 >gi|303316103|ref|XP_003068056.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|240107732|gb|EER25911.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] Length = 1240 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 20/133 (15%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD----HVLFVGPPGLGKTTLAQVVA- 75 L+R + LEE Q ++K ++ +++ +L+ +V+F G PG GKTT A++ A Sbjct: 169 LMRYQGLEEVKQQF---LDIKSKVDICESQGRSLNRERFNVVFQGNPGTGKTTFARLYAE 225 Query: 76 --RELGV----NFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEI 124 +GV F+ T+G +A G A +ED VLFIDE ++L+ E Sbjct: 226 FLHSVGVINSSYFKETAGIALAVKGAEGA-QDEVEDILNHNGGVLFIDEAYQLTAAYIEA 284 Query: 125 LYPAMEDFQLDLM 137 L DF L M Sbjct: 285 LGKQALDFLLKAM 297 >gi|256956807|ref|ZP_05560978.1| peptidase M41 [Enterococcus faecalis DS5] gi|256964188|ref|ZP_05568359.1| peptidase M41 [Enterococcus faecalis HIP11704] gi|257421554|ref|ZP_05598544.1| cell division protein ftsH [Enterococcus faecalis X98] gi|294779309|ref|ZP_06744712.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis PC1.1] gi|300862072|ref|ZP_07108152.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TUSoD Ef11] gi|256947303|gb|EEU63935.1| peptidase M41 [Enterococcus faecalis DS5] gi|256954684|gb|EEU71316.1| peptidase M41 [Enterococcus faecalis HIP11704] gi|257163378|gb|EEU93338.1| cell division protein ftsH [Enterococcus faecalis X98] gi|294453595|gb|EFG21994.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis PC1.1] gi|295112550|emb|CBL31187.1| membrane protease FtsH catalytic subunit [Enterococcus sp. 7L76] gi|300848597|gb|EFK76354.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TUSoD Ef11] gi|323479478|gb|ADX78917.1| ATP-dependent metallopeptidase, cell division protease ftsH domain protein [Enterococcus faecalis 62] Length = 718 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 253 >gi|296138295|ref|YP_003645538.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM 20162] gi|296026429|gb|ADG77199.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM 20162] Length = 801 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ AR +AL VL GPPG GKT LA+ VA E GV F + SG Sbjct: 180 VEELYEIKDFLQNP-ARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISG 237 >gi|283798857|ref|ZP_06348010.1| cell division protein FtsH [Clostridium sp. M62/1] gi|291073395|gb|EFE10759.1| cell division protein FtsH [Clostridium sp. M62/1] Length = 620 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +T + GQ EA LK ++ A+ A L VGPPG GKT LA+ VA E Sbjct: 167 KTFADVAGQEEAKDALKEIVDFLHNPGKYAEIGATLPKGALLVGPPGTGKTLLAKAVAGE 226 Query: 78 LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114 V F S SG + A + L ++ ++FIDEI Sbjct: 227 AHVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCIVFIDEI 271 >gi|168044124|ref|XP_001774532.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674087|gb|EDQ60600.1| predicted protein [Physcomitrella patens subsp. patens] Length = 630 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F + SG Sbjct: 204 VLLVGPPGTGKTLLAKAIAGEAGVPFFAVSG 234 >gi|152991151|ref|YP_001356873.1| cell division protein FtsH [Nitratiruptor sp. SB155-2] gi|151423012|dbj|BAF70516.1| cell division protein FtsH [Nitratiruptor sp. SB155-2] Length = 660 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL VGPPG GKT LA+ VA E V F + SG + G AA + +L E + Sbjct: 220 VLLVGPPGTGKTLLAKAVAGEADVPFFAVSGSSFIEMFVGVGAARVRDLFEQAKKEAPSI 279 Query: 109 LFIDEI 114 +FIDEI Sbjct: 280 IFIDEI 285 >gi|153004905|ref|YP_001379230.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5] gi|152028478|gb|ABS26246.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5] Length = 687 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 10/71 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107 VL VGPPG GKT LA+ A E GV F S SG A+ DL A T + Sbjct: 232 VLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFAQATQ-KAPC 290 Query: 108 VLFIDEIHRLS 118 ++FIDE+ L Sbjct: 291 IVFIDELDALG 301 >gi|153005199|ref|YP_001379524.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5] gi|152028772|gb|ABS26540.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5] Length = 634 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL +GPPG GKT LA+ VA E GV F S SG + G A+ + +L ++ + Sbjct: 191 VLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCI 250 Query: 109 LFIDEI 114 +FIDEI Sbjct: 251 IFIDEI 256 >gi|49246395|gb|AAT58329.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246409|gb|AAT58336.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246411|gb|AAT58337.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246415|gb|AAT58339.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] Length = 152 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 56 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 86 >gi|86561515|ref|NP_490816.4| related to yeast Vacuolar Protein Sorting factor family member (vps-4) [Caenorhabditis elegans] gi|145312333|gb|AAK29883.4| Related to yeast vacuolar protein sorting factor protein 4 [Caenorhabditis elegans] Length = 430 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 19/201 (9%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVN--FRSTSGPVIAKA-GDLAALLTNL------EDRD 107 +L GPPG GK+ +A+ VA E G + F +S +++K G+ L+ NL Sbjct: 154 ILLFGPPGTGKSYIAKAVATEAGESTFFSISSSDLMSKWLGESEKLVKNLFALAREHKPS 213 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++FIDEI L + + + + MV + V +N ++ AT +L Sbjct: 214 IIFIDEIDSLCSARSDNESESARRIKTEFMV----QMQGVGLNNDGILVLGATNIPWILD 269 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR------I 221 + ++ RF I + +I K + + +TD+ +A R G + Sbjct: 270 SAIRRRFEKRIYIPLPDIHARKEMFRIDVGKNYNTLTDQDFKVLAERCEGYSGYDISILV 329 Query: 222 AGRLLRRVRDFAEVAHAKTIT 242 L++ VR H K ++ Sbjct: 330 KDALMQPVRRVQSATHFKHVS 350 >gi|254252157|ref|ZP_04945475.1| ATP-dependent protease ATP-binding subunit [Burkholderia dolosa AUO158] gi|124894766|gb|EAY68646.1| ATP-dependent protease ATP-binding subunit [Burkholderia dolosa AUO158] Length = 423 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 EKAQRGIVYIDEIDKIS 192 >gi|78066692|ref|YP_369461.1| ATP-dependent protease ATP-binding subunit [Burkholderia sp. 383] gi|107028899|ref|YP_625994.1| ATP-dependent protease ATP-binding subunit [Burkholderia cenocepacia AU 1054] gi|116689943|ref|YP_835566.1| ATP-dependent protease ATP-binding subunit [Burkholderia cenocepacia HI2424] gi|170733281|ref|YP_001765228.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia cenocepacia MC0-3] gi|206560358|ref|YP_002231122.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia cenocepacia J2315] gi|122977698|sp|Q1BH84|CLPX_BURCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123756153|sp|Q39FE9|CLPX_BURS3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214761|sp|A0K846|CLPX_BURCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238688580|sp|B1JTU9|CLPX_BURCC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238693098|sp|B4EBM2|CLPX_BURCJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|77967437|gb|ABB08817.1| ClpX, ATPase regulatory subunit [Burkholderia sp. 383] gi|105898063|gb|ABF81021.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia cenocepacia AU 1054] gi|116648032|gb|ABK08673.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia cenocepacia HI2424] gi|169816523|gb|ACA91106.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia cenocepacia MC0-3] gi|198036399|emb|CAR52295.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia cenocepacia J2315] gi|325518992|gb|EGC98515.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia sp. TJI49] Length = 423 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 DKAQRGIVYIDEIDKIS 192 >gi|332283983|ref|YP_004415894.1| ATP-dependent protease ATP-binding subunit ClpX [Pusillimonas sp. T7-7] gi|330427936|gb|AEC19270.1| ATP-dependent protease ATP-binding subunit ClpX [Pusillimonas sp. T7-7] Length = 435 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 115 NILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLLQNCNYDV 174 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 DKAQRAIIYIDEIDKIS 191 >gi|327287589|ref|XP_003228511.1| PREDICTED: chromosome transmission fidelity protein 18 homolog [Anolis carolinensis] Length = 987 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 10/68 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF--------RSTSG--PVIAKAGDLAALLTNLEDR 106 L GPPGLGKTTLA V+A+ G N RS I A + ++L E Sbjct: 389 ALLCGPPGLGKTTLAHVIAKHAGYNVVEMNASDDRSPEAFKTRIEAATQMRSVLGANEKP 448 Query: 107 DVLFIDEI 114 + L IDEI Sbjct: 449 NCLVIDEI 456 >gi|315924139|ref|ZP_07920365.1| ATP-dependent Clp protease ATP-binding subunit [Pseudoramibacter alactolyticus ATCC 23263] gi|315622541|gb|EFV02496.1| ATP-dependent Clp protease ATP-binding subunit [Pseudoramibacter alactolyticus ATCC 23263] Length = 431 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 113 NILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADMDI 172 Query: 104 --EDRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 173 ERAEKGIIYIDEIDKIS 189 >gi|307274229|ref|ZP_07555437.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0855] gi|306509191|gb|EFM78253.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0855] Length = 725 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 230 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 260 >gi|296271397|ref|YP_003654029.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM 43833] gi|296094184|gb|ADG90136.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM 43833] Length = 679 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 204 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 234 >gi|296166815|ref|ZP_06849233.1| DNA polymerase III, gamma/tau subunit DnaX [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897831|gb|EFG77419.1| DNA polymerase III, gamma/tau subunit DnaX [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 625 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ L + +EA + ++H LF GP G GKT+ A+++AR L Sbjct: 23 RPATFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCV 77 Query: 82 FRSTSGPV 89 T+ P Sbjct: 78 QGPTANPC 85 >gi|294852447|ref|ZP_06793120.1| ATP-dependent Clp protease [Brucella sp. NVSL 07-0026] gi|294821036|gb|EFG38035.1| ATP-dependent Clp protease [Brucella sp. NVSL 07-0026] Length = 424 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|302895269|ref|XP_003046515.1| hypothetical protein NECHADRAFT_66291 [Nectria haematococca mpVI 77-13-4] gi|256727442|gb|EEU40802.1| hypothetical protein NECHADRAFT_66291 [Nectria haematococca mpVI 77-13-4] Length = 1120 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 37/179 (20%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83 FI K R +L FVGPPG+GKT++ + +AR L + R Sbjct: 587 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFSVGGLTDVAEIKGHRR 646 Query: 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLD 135 + G + + + AL + ++ IDEI ++ S + E+L P LD Sbjct: 647 TYVGALPGRM--IQALKKCQTENPLILIDEIDKIGRGYQGDPSSALLELLDPEQNSSFLD 704 Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + V ++LS+ + + PL DR I I L+ Y ++ I QR Sbjct: 705 HYM-------DVPVDLSKVLFVCTANMTDTIPRPLLDRMEI-ITLSGYVADEKMAIAQR 755 >gi|254701853|ref|ZP_05163681.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis bv. 5 str. 513] gi|261752414|ref|ZP_05996123.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis bv. 5 str. 513] gi|261742167|gb|EEY30093.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis bv. 5 str. 513] Length = 424 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|237714894|ref|ZP_04545375.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406838|ref|ZP_06083387.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647192|ref|ZP_06724791.1| ATPase family associated with various cellular activities (AAA) [Bacteroides ovatus SD CC 2a] gi|294809196|ref|ZP_06767912.1| ATPase family associated with various cellular activities (AAA) [Bacteroides xylanisolvens SD CC 1b] gi|229445219|gb|EEO51010.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355541|gb|EEZ04632.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637479|gb|EFF55898.1| ATPase family associated with various cellular activities (AAA) [Bacteroides ovatus SD CC 2a] gi|294443590|gb|EFG12341.1| ATPase family associated with various cellular activities (AAA) [Bacteroides xylanisolvens SD CC 1b] Length = 324 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 24/168 (14%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106 HVL G PG+ KT LA++ AR + +F R P + + L + N++ Sbjct: 48 HVLIEGVPGVAKTLLARLTARLIDADFSRVQFTPDLMPSDVLGTTVFNMKTNGFDFHQGP 107 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 D++ +DEI+R + L+ ME+ Q+ + +G + R + +T++A V Sbjct: 108 IFADIVLVDEINRAPAKTQAALFEVMEERQISI---DGTTHRMGDL----YTILATQNPV 160 Query: 164 ---GLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 G P DRF + I +++ +E+ I++R L D+ Sbjct: 161 EQEGTYKLPEAQLDRFLMKITMDYPSLEEEVNILERHHTNAALVKLDD 208 >gi|168019251|ref|XP_001762158.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686562|gb|EDQ72950.1| predicted protein [Physcomitrella patens subsp. patens] Length = 513 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG KT LA+ A E G+NF + GP + G+ + +L R + Sbjct: 309 VLLYGPPGCSKTLLARACASEAGLNFIAVKGPELFSKWVGESEKAVQSLFARARTAAPSI 368 Query: 109 LFIDEIHRLSI 119 +F DEI L++ Sbjct: 369 VFFDEIDALAV 379 Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DV 108 +L GPPG GK+TLA+ A E GV + +GP + G+ L A+ T E+ V Sbjct: 41 ILLYGPPGTGKSTLARAAACEAGVPLFAINGPDVVSQFYGESEEALRAVFTAAEEAAPSV 100 Query: 109 LFIDEI 114 + IDE+ Sbjct: 101 VVIDEV 106 >gi|168023113|ref|XP_001764083.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684822|gb|EDQ71222.1| predicted protein [Physcomitrella patens subsp. patens] Length = 802 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 9/108 (8%) Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVV 74 DAD+ L + ++E + + E + R + +L G PG GKT LA+ V Sbjct: 330 DADVKFADVAGLGDIRKELEEIVDFFTYGEKYRRRGSKIPAGILLCGEPGTGKTLLAKAV 389 Query: 75 ARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DVLFIDEI 114 A E GVNF S S + A + AL + V+FIDE+ Sbjct: 390 AGEAGVNFFSISASQFVEIYVGVGASRVRALYNEARENAPAVVFIDEL 437 >gi|156937754|ref|YP_001435550.1| TBP-interacting protein TIP49 [Ignicoccus hospitalis KIN4/I] gi|156566738|gb|ABU82143.1| TBP-interacting protein TIP49 [Ignicoccus hospitalis KIN4/I] Length = 450 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 27/50 (54%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ EA L V + K A VL VGPPG GKT LA +A+ELG Sbjct: 42 LVGQEEAREALGVVAQMVKEGKMAGKGVLIVGPPGTGKTALAVGLAKELG 91 >gi|121702141|ref|XP_001269335.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Aspergillus clavatus NRRL 1] gi|119397478|gb|EAW07909.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Aspergillus clavatus NRRL 1] Length = 738 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 515 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 546 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 21/104 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108 VL GPPG GKT +A A ELG+ F S P I +G+ AL + E+ + Sbjct: 209 VLLHGPPGCGKTMIANAFAAELGIPFIPISAPSIVSGMSGESEKALREHFEEAKRIAPCL 268 Query: 109 LFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGE 140 +FIDEI ++ IV ++L M+D LD G+ Sbjct: 269 IFIDEIDAITPKRESAQREMEKRIVAQLLT-CMDDLALDKTDGK 311 >gi|160880656|ref|YP_001559624.1| stage III sporulation protein AA [Clostridium phytofermentans ISDg] gi|160429322|gb|ABX42885.1| stage III sporulation protein AA [Clostridium phytofermentans ISDg] Length = 322 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 + QV+ C+NL + R ++ H L + PPG GKTTL + V R+L + T G Sbjct: 130 LSHQVKGCANL---VMPYILRDNSIYHTLIISPPGCGKTTLLRDVIRQLSDGEQDTKG 184 >gi|90410783|ref|ZP_01218798.1| ATP-dependent protease ATP-binding subunit [Photobacterium profundum 3TCK] gi|90328414|gb|EAS44712.1| ATP-dependent protease ATP-binding subunit [Photobacterium profundum 3TCK] Length = 426 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|281360140|ref|NP_001163523.1| katanin p60-like 1, isoform E [Drosophila melanogaster] gi|281360144|ref|NP_001163525.1| katanin p60-like 1, isoform G [Drosophila melanogaster] gi|68051715|gb|AAY85121.1| AT01259p [Drosophila melanogaster] gi|272476828|gb|ACZ94822.1| katanin p60-like 1, isoform E [Drosophila melanogaster] gi|272476830|gb|ACZ94824.1| katanin p60-like 1, isoform G [Drosophila melanogaster] Length = 673 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 430 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 489 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 490 IFIDEIDAL 498 >gi|49246439|gb|AAT58351.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] Length = 154 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 58 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 88 >gi|8132824|gb|AAF73407.1|AF230642_1 ClpX [Ehrlichia chaffeensis] Length = 443 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 18/95 (18%) Query: 38 SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG--- 94 SNL V E +++ +VL +GP G GKT LA+ +AR L + F + +AG Sbjct: 94 SNLSVISEVEISKS----NVLLIGPTGSGKTLLARTLARVLQIPFAMADATTLTEAGYVG 149 Query: 95 -DLAALLTNL----------EDRDVLFIDEIHRLS 118 D+ +L L R +++IDE+ ++S Sbjct: 150 EDVENILLKLLQAANFNVDAAQRGIIYIDEVDKIS 184 >gi|50556774|ref|XP_505795.1| YALI0F23595p [Yarrowia lipolytica] gi|74632314|sp|Q6C0L7|LONP2_YARLI RecName: Full=Lon protease homolog 2, peroxisomal gi|49651665|emb|CAG78606.1| YALI0F23595p [Yarrowia lipolytica] Length = 952 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 18/30 (60%), Positives = 23/30 (76%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 +L VGPPG+GKT+LA+ VAR LG F+ S Sbjct: 489 LLLVGPPGVGKTSLAKSVARALGRKFQRLS 518 >gi|17987158|ref|NP_539792.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella melitensis bv. 1 str. 16M] gi|62290023|ref|YP_221816.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus bv. 1 str. 9-941] gi|82699950|ref|YP_414524.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella melitensis biovar Abortus 2308] gi|225852609|ref|YP_002732842.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella melitensis ATCC 23457] gi|237815532|ref|ZP_04594529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella abortus str. 2308 A] gi|254689335|ref|ZP_05152589.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus bv. 6 str. 870] gi|254693819|ref|ZP_05155647.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus bv. 3 str. Tulya] gi|254697468|ref|ZP_05159296.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus bv. 2 str. 86/8/59] gi|254730365|ref|ZP_05188943.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus bv. 4 str. 292] gi|256044766|ref|ZP_05447670.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella melitensis bv. 1 str. Rev.1] gi|256061192|ref|ZP_05451344.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella neotomae 5K33] gi|256257581|ref|ZP_05463117.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus bv. 9 str. C68] gi|256263898|ref|ZP_05466430.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 2 str. 63/9] gi|260565632|ref|ZP_05836116.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 1 str. 16M] gi|260754851|ref|ZP_05867199.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 6 str. 870] gi|260758068|ref|ZP_05870416.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 4 str. 292] gi|260761892|ref|ZP_05874235.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 2 str. 86/8/59] gi|260883863|ref|ZP_05895477.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 9 str. C68] gi|261214102|ref|ZP_05928383.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 3 str. Tulya] gi|261325199|ref|ZP_05964396.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella neotomae 5K33] gi|265991189|ref|ZP_06103746.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 1 str. Rev.1] gi|297248423|ref|ZP_06932141.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella abortus bv. 5 str. B3196] gi|21263465|sp|Q8YHC7|CLPX_BRUME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|68067919|sp|Q9L7X5|CLPX_BRUAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123727373|sp|Q2YPX2|CLPX_BRUA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763837|sp|C0RJ80|CLPX_BRUMB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|17982824|gb|AAL52056.1| ATP-dependent clp protease ATP-binding subunit clpx [Brucella melitensis bv. 1 str. 16M] gi|62196155|gb|AAX74455.1| ClpX, ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella abortus bv. 1 str. 9-941] gi|82616051|emb|CAJ11087.1| CbxX/CfqX superfamily:ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATP [Brucella melitensis biovar Abortus 2308] gi|225640974|gb|ACO00888.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella melitensis ATCC 23457] gi|237788830|gb|EEP63041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella abortus str. 2308 A] gi|260151700|gb|EEW86794.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 1 str. 16M] gi|260668386|gb|EEX55326.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 4 str. 292] gi|260672324|gb|EEX59145.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 2 str. 86/8/59] gi|260674959|gb|EEX61780.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 6 str. 870] gi|260873391|gb|EEX80460.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 9 str. C68] gi|260915709|gb|EEX82570.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 3 str. Tulya] gi|261301179|gb|EEY04676.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella neotomae 5K33] gi|263001973|gb|EEZ14548.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 1 str. Rev.1] gi|263094030|gb|EEZ17964.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 2 str. 63/9] gi|297175592|gb|EFH34939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella abortus bv. 5 str. B3196] gi|326409128|gb|ADZ66193.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella melitensis M28] gi|326538836|gb|ADZ87051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella melitensis M5-90] Length = 424 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|119384011|ref|YP_915067.1| ATP-dependent protease ATP-binding subunit [Paracoccus denitrificans PD1222] gi|166214797|sp|A1B1H7|CLPX_PARDP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|119373778|gb|ABL69371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paracoccus denitrificans PD1222] Length = 421 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 20/92 (21%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100 K IE AK+ ++L +GP G GKT LAQ +AR L V F + +AG + + Sbjct: 103 KTDIELAKS------NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDV 156 Query: 101 TNL--------------EDRDVLFIDEIHRLS 118 N+ R +++IDE+ +++ Sbjct: 157 ENIILKLLQASEYNVERAQRGIVYIDEVDKIT 188 >gi|323139016|ref|ZP_08074076.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242] gi|322395770|gb|EFX98311.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242] Length = 254 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ +A E GV F S SG Sbjct: 193 VLLVGPPGTGKTLLARAIAGEAGVPFFSISG 223 >gi|312138052|ref|YP_004005388.1| cell division related ATP-dependent protease ftsh [Rhodococcus equi 103S] gi|311887391|emb|CBH46703.1| cell division related ATP-dependent protease FtsH [Rhodococcus equi 103S] Length = 777 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ AR +AL VL GPPG GKT LA+ VA E GV F + SG Sbjct: 175 VEELYEIKDFLQN-PARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISG 232 >gi|289619587|emb|CBI53870.1| unnamed protein product [Sordaria macrospora] Length = 909 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 98/244 (40%), Gaps = 57/244 (23%) Query: 44 IEAAKARAEALDH---------VLFVGPPGLGKTTLAQVVARELGVNFRSTS-------- 86 ++A A+ EAL + +L VGPPG+GKT+LA+ VA LG F S Sbjct: 437 VKAGGAKLEALKNRRMVDKSPILLLVGPPGVGKTSLARSVATALGRKFHRISLGGVRDEA 496 Query: 87 -------GPVIAKAGDLAALLTNLEDRDVLF-IDEIHRL---------SIIVEEILYPAM 129 V A G + L + + +F +DEI ++ S + E+L P Sbjct: 497 EIRGHRRTYVAAMPGLVVQGLKKVGVANPVFLLDEIDKVGGSSIHGDPSAAMLEVLDPEQ 556 Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-- 187 D V ++ I+LS+ IA + + PL DR + +E Sbjct: 557 NHNFTDHYV-------NIPIDLSKVLFIATANSLDTIPAPLLDRMETIYIPGYTTLEKRH 609 Query: 188 --LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 ++ +V + ++ GL DE+ TP + ++ + + A + + REI Sbjct: 610 IAMQHLVPKQLRVNGL---DESQVSF------TPEVVSKI---IESYTREAGVRNLEREI 657 Query: 246 ADAA 249 + A Sbjct: 658 SSVA 661 >gi|312194201|ref|YP_004014262.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c] gi|311225537|gb|ADP78392.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c] Length = 718 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 194 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 224 >gi|258648945|ref|ZP_05736414.1| lipoprotein releasing system, ATP-binding protein [Prevotella tannerae ATCC 51259] gi|260850540|gb|EEX70409.1| lipoprotein releasing system, ATP-binding protein [Prevotella tannerae ATCC 51259] Length = 217 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 11/77 (14%) Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIH 115 VGP G GKTTL QV LG +R +G ++ DL+AL L + + FI + H Sbjct: 33 VGPSGAGKTTLLQV----LGTLYRPDAGSILFNGTDLSALGKKALARFRNEHIGFIFQFH 88 Query: 116 RL---SIIVEEILYPAM 129 +L +E + PA+ Sbjct: 89 QLLPEFTALENVFIPAL 105 >gi|257877910|ref|ZP_05657563.1| peptidase M41 [Enterococcus casseliflavus EC20] gi|257812076|gb|EEV40896.1| peptidase M41 [Enterococcus casseliflavus EC20] Length = 702 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254 >gi|197302420|ref|ZP_03167475.1| hypothetical protein RUMLAC_01148 [Ruminococcus lactaris ATCC 29176] gi|197298318|gb|EDY32863.1| hypothetical protein RUMLAC_01148 [Ruminococcus lactaris ATCC 29176] Length = 700 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/30 (66%), Positives = 21/30 (70%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ VA E GV F S SG Sbjct: 272 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSG 301 >gi|195568563|ref|XP_002102283.1| GD19820 [Drosophila simulans] gi|194198210|gb|EDX11786.1| GD19820 [Drosophila simulans] Length = 668 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 425 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 484 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 485 IFIDEIDAL 493 >gi|167586933|ref|ZP_02379321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ubonensis Bu] Length = 423 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 EKAQRGIVYIDEIDKIS 192 >gi|161619060|ref|YP_001592947.1| ATP-dependent protease ATP-binding subunit [Brucella canis ATCC 23365] gi|189082485|sp|A9M5C1|CLPX_BRUC2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|161335871|gb|ABX62176.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella canis ATCC 23365] Length = 424 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|160880188|ref|YP_001559156.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans ISDg] gi|310943128|sp|A9KIG5|FTSH_CLOPH RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|160428854|gb|ABX42417.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans ISDg] Length = 577 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 V+ GPPG GKT +A+ +A E GV F + SG V A + L + ++ V Sbjct: 182 VMLYGPPGTGKTLIAKAIATEAGVPFYAMSGSDFVQMYVGVGASRIRTLFNKAKKSEKAV 241 Query: 109 LFIDEI 114 +FIDEI Sbjct: 242 IFIDEI 247 >gi|157413381|ref|YP_001484247.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215] gi|157387956|gb|ABV50661.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215] Length = 584 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL +GPPG GKT LA+ +A E GV F S S V A + L + +++ + Sbjct: 170 VLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCI 229 Query: 109 LFIDEIHRL 117 +FIDEI + Sbjct: 230 IFIDEIDSI 238 >gi|148560290|ref|YP_001259030.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ovis ATCC 25840] gi|166214760|sp|A5VQN3|CLPX_BRUO2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|148371547|gb|ABQ61526.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ovis ATCC 25840] Length = 427 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|118576833|ref|YP_876576.1| replication factor C/ATPase involved in DNA replication [Cenarchaeum symbiosum A] gi|118195354|gb|ABK78272.1| replication factor C/ATPase involved in DNA replication [Cenarchaeum symbiosum A] Length = 386 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--- 79 RPR + G EA + L + K + VL VGPPG GKTT+A + A+ G Sbjct: 8 RPRDIPSMVGNEEARAALSGWFSKWK---KGTKPVLLVGPPGTGKTTVANLAAKAHGYDV 64 Query: 80 VNFRSTSGPVIAKAGD-LAALLTNLE--DRDVLFIDEI 114 ++ ++ ++ + L+ +L N+ ++FIDE+ Sbjct: 65 ISLNASDARSKSRINEVLSPVLGNVSVLGSPMIFIDEV 102 >gi|117927413|ref|YP_871964.1| Mername-AA223 peptidase [Acidothermus cellulolyticus 11B] gi|117647876|gb|ABK51978.1| membrane protease FtsH catalytic subunit [Acidothermus cellulolyticus 11B] Length = 654 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 187 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 217 >gi|83721081|ref|YP_442644.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia thailandensis E264] gi|167581578|ref|ZP_02374452.1| ATP-dependent protease ATP-binding subunit [Burkholderia thailandensis TXDOH] gi|167619694|ref|ZP_02388325.1| ATP-dependent protease ATP-binding subunit [Burkholderia thailandensis Bt4] gi|257138855|ref|ZP_05587117.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia thailandensis E264] gi|123536902|sp|Q2SWQ5|CLPX_BURTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|83654906|gb|ABC38969.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia thailandensis E264] Length = 423 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 DKAQRGIVYIDEIDKIS 192 >gi|15615613|ref|NP_243917.1| ATP-dependent proteinase La [Bacillus halodurans C-125] gi|10175673|dbj|BAB06770.1| ATP-dependent proteinase La [Bacillus halodurans C-125] Length = 556 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP + E+ GQ E LK + + HV+ GPPG+GKT A++V +E N Sbjct: 63 VRPESFEDIVGQKEGIRALKAALCGPNPQ-----HVIIYGPPGVGKTAAARLVLQEAKKN 117 Query: 82 FRS 84 S Sbjct: 118 PNS 120 >gi|254247969|ref|ZP_04941290.1| ClpX, ATPase regulatory subunit [Burkholderia cenocepacia PC184] gi|124872745|gb|EAY64461.1| ClpX, ATPase regulatory subunit [Burkholderia cenocepacia PC184] Length = 390 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 83 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 142 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 143 DKAQRGIVYIDEIDKIS 159 >gi|126441050|ref|YP_001059355.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia pseudomallei 668] gi|126452859|ref|YP_001066626.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 1106a] gi|134277221|ref|ZP_01763936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 305] gi|162210030|ref|YP_333873.2| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia pseudomallei 1710b] gi|167719123|ref|ZP_02402359.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei DM98] gi|167738117|ref|ZP_02410891.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 14] gi|167815309|ref|ZP_02446989.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 91] gi|167823711|ref|ZP_02455182.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 9] gi|167836266|ref|ZP_02463149.1| ATP-dependent protease ATP-binding subunit [Burkholderia thailandensis MSMB43] gi|167845262|ref|ZP_02470770.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei B7210] gi|167893806|ref|ZP_02481208.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 7894] gi|167902258|ref|ZP_02489463.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei NCTC 13177] gi|167910497|ref|ZP_02497588.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 112] gi|167918526|ref|ZP_02505617.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei BCC215] gi|217421598|ref|ZP_03453102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 576] gi|226197310|ref|ZP_03792887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei Pakistan 9] gi|237812683|ref|YP_002897134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei MSHR346] gi|242316368|ref|ZP_04815384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1106b] gi|254179428|ref|ZP_04886027.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1655] gi|254189183|ref|ZP_04895694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei Pasteur 52237] gi|254197477|ref|ZP_04903899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei S13] gi|254260834|ref|ZP_04951888.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1710a] gi|254297313|ref|ZP_04964766.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 406e] gi|61211439|sp|Q63V40|CLPX_BURPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214765|sp|A3NWA5|CLPX_BURP0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214766|sp|A3NAI4|CLPX_BURP6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|126220543|gb|ABN84049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 668] gi|126226501|gb|ABN90041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1106a] gi|134250871|gb|EBA50950.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 305] gi|157806801|gb|EDO83971.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 406e] gi|157936862|gb|EDO92532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei Pasteur 52237] gi|169654218|gb|EDS86911.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei S13] gi|184209968|gb|EDU07011.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1655] gi|217395340|gb|EEC35358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 576] gi|225930689|gb|EEH26699.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei Pakistan 9] gi|237506116|gb|ACQ98434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei MSHR346] gi|242139607|gb|EES26009.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1106b] gi|254219523|gb|EET08907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1710a] Length = 423 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 EKAQRGIVYIDEIDKIS 192 >gi|134295957|ref|YP_001119692.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia vietnamiensis G4] gi|166214767|sp|A4JF04|CLPX_BURVG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|134139114|gb|ABO54857.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia vietnamiensis G4] Length = 423 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 DKAQRGIVYIDEIDKIS 192 >gi|325922709|ref|ZP_08184449.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas gardneri ATCC 19865] gi|325546826|gb|EGD17940.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas gardneri ATCC 19865] Length = 428 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 29/133 (21%) Query: 15 EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE----------ALDHVLF 59 + A SL +PR + E GQ+ A L V + R E A ++L Sbjct: 60 QSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDEVELAKSNILL 119 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108 VGP G GKT LA+ +AR L V F + +AG + + N+ D DV Sbjct: 120 VGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQ 179 Query: 109 ---LFIDEIHRLS 118 ++IDEI ++S Sbjct: 180 QGIVYIDEIDKIS 192 >gi|307942063|ref|ZP_07657414.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseibium sp. TrichSKD4] gi|307774349|gb|EFO33559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseibium sp. TrichSKD4] Length = 431 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 120 AKSNILLAGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 179 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 180 YNVERAQRGIVYIDEVDKIS 199 >gi|307595017|ref|YP_003901334.1| Replication factor C [Vulcanisaeta distributa DSM 14429] gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429] Length = 327 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72 S+E + RP +++ Q + +K + + H+LF GPPG GKTT+A Sbjct: 3 SEEVLWVEKYRPSRIDDIIDQDHVKARVKEMLANGN-----IPHLLFFGPPGTGKTTMAL 57 Query: 73 VVAREL 78 +AREL Sbjct: 58 AIAREL 63 >gi|300710324|ref|YP_003736138.1| hypothetical protein HacjB3_04775 [Halalkalicoccus jeotgali B3] gi|299124007|gb|ADJ14346.1| hypothetical protein HacjB3_04775 [Halalkalicoccus jeotgali B3] Length = 723 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 496 VLLYGPPGTGKTLLAKAVANEADSNFISIKGP 527 >gi|297466769|ref|XP_001787757.2| PREDICTED: Cell Division Cycle related family member (cdc-48.2)-like, partial [Bos taurus] Length = 786 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 396 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSI 455 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 456 IFIDELDAL 464 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 670 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 701 >gi|291530324|emb|CBK95909.1| membrane protease FtsH catalytic subunit [Eubacterium siraeum 70/3] Length = 649 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL +GPPG GKT LA+ VA E V F S SG + G A+ + +L D+ + Sbjct: 206 VLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKHTPSI 265 Query: 109 LFIDEI 114 +FIDEI Sbjct: 266 IFIDEI 271 >gi|291526623|emb|CBK92209.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale M104/1] Length = 604 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 VFIDEI 266 >gi|289616165|emb|CBI56961.1| putative ATP-dependent peptidase [Sordaria macrospora] Length = 846 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F + SG Sbjct: 399 VLLVGPPGTGKTLLARAVAGEAGVPFFNMSG 429 >gi|288921153|ref|ZP_06415441.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f] gi|288347462|gb|EFC81751.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f] Length = 751 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 201 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 231 >gi|295676518|ref|YP_003605042.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. CCGE1002] gi|295436361|gb|ADG15531.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. CCGE1002] Length = 423 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 DKAQRGIVYIDEIDKIS 192 >gi|297738362|emb|CBI27563.3| unnamed protein product [Vitis vinifera] Length = 769 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 19/31 (61%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 L GPPG GKT +A+ VA E G NF GP Sbjct: 536 LLYGPPGCGKTLIAKAVANEAGANFIHIKGP 566 >gi|260437757|ref|ZP_05791573.1| ATP-dependent metalloprotease FtsH [Butyrivibrio crossotus DSM 2876] gi|292809779|gb|EFF68984.1| ATP-dependent metalloprotease FtsH [Butyrivibrio crossotus DSM 2876] Length = 618 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 V+ VGPPG GKT +A+ VA E GV F S SG Sbjct: 210 VILVGPPGTGKTLIAKAVAGEAGVPFFSISG 240 >gi|238922414|ref|YP_002935928.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750] gi|238874086|gb|ACR73794.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750] Length = 604 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 VFIDEI 266 >gi|238026974|ref|YP_002911205.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia glumae BGR1] gi|237876168|gb|ACR28501.1| ATP-dependent protease ATP-binding subunit [Burkholderia glumae BGR1] Length = 423 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 EKAQRGIVYIDEIDKIS 192 >gi|189485209|ref|YP_001956150.1| cell division protease FtsH [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|310946769|sp|B1GZK7|FTSH_UNCTG RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|170287168|dbj|BAG13689.1| cell division protease FtsH [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 631 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 54/115 (46%), Gaps = 20/115 (17%) Query: 26 TLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA L+ IE K AR + L VL G PG GKT LA+ VA E Sbjct: 154 TFKDVAGCDEAKEELQELIEFLKDPARFQKLGGKIPKGVLLFGSPGTGKTLLAKAVAGEA 213 Query: 79 GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI-----HRLSII 120 V F S+SG + G A+ + +L D +LFIDEI HR + I Sbjct: 214 NVPFFSSSGSEFVEMFVGVGASRVRDLFDHGRKSAPCLLFIDEIDAVGRHRFAGI 268 >gi|167562415|ref|ZP_02355331.1| ATP-dependent protease ATP-binding subunit [Burkholderia oklahomensis EO147] gi|167569598|ref|ZP_02362472.1| ATP-dependent protease ATP-binding subunit [Burkholderia oklahomensis C6786] Length = 423 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 EKAQRGIVYIDEIDKIS 192 >gi|126696352|ref|YP_001091238.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301] gi|126543395|gb|ABO17637.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301] Length = 584 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL +GPPG GKT LA+ +A E GV F S S V A + L + +++ + Sbjct: 170 VLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCI 229 Query: 109 LFIDEIHRL 117 +FIDEI + Sbjct: 230 IFIDEIDSI 238 >gi|118443245|ref|YP_878862.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium novyi NT] gi|229889851|sp|A0Q2L0|CLPX_CLONN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|118133701|gb|ABK60745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium novyi NT] Length = 431 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 110 NILLLGPTGSGKTLLAQTLARLLNVPFAMADATTLTEAGYVGEDVENILLKLIQNADYDI 169 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 170 EKAERGIIYIDEIDKIA 186 >gi|186475877|ref|YP_001857347.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815] gi|184192336|gb|ACC70301.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815] Length = 653 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 8/72 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL VG PG GKT LA+ VA E GV F S SG + G AA + +L E + Sbjct: 218 VLIVGAPGTGKTLLAKAVAGEAGVPFHSVSGAGFVEMFVGVGAARVRDLFEQAQAEAPCI 277 Query: 109 LFIDEIHRLSII 120 +FIDE+ L + Sbjct: 278 IFIDELDALGKV 289 >gi|10435075|dbj|BAB14482.1| unnamed protein product [Homo sapiens] gi|158256350|dbj|BAF84146.1| unnamed protein product [Homo sapiens] Length = 620 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG+GKT L Q VARE G + S P + Sbjct: 237 VLLAGPPGVGKTQLVQAVAREAGAELLAVSAPAL 270 >gi|21241839|ref|NP_641421.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas axonopodis pv. citri str. 306] gi|78046638|ref|YP_362813.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|289664184|ref|ZP_06485765.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668775|ref|ZP_06489850.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294627914|ref|ZP_06706493.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666561|ref|ZP_06731802.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325914925|ref|ZP_08177257.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas vesicatoria ATCC 35937] gi|325927442|ref|ZP_08188689.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas perforans 91-118] gi|23813860|sp|Q8PNI4|CLPX_XANAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123585731|sp|Q3BWQ0|CLPX_XANC5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|21107219|gb|AAM35957.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas axonopodis pv. citri str. 306] gi|78035068|emb|CAJ22713.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292597828|gb|EFF41986.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603705|gb|EFF47115.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325538818|gb|EGD10482.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas vesicatoria ATCC 35937] gi|325542192|gb|EGD13687.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas perforans 91-118] Length = 428 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 29/133 (21%) Query: 15 EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE----------ALDHVLF 59 + A SL +PR + E GQ+ A L V + R E A ++L Sbjct: 60 QSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILL 119 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108 VGP G GKT LA+ +AR L V F + +AG + + N+ D DV Sbjct: 120 VGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQ 179 Query: 109 ---LFIDEIHRLS 118 ++IDEI ++S Sbjct: 180 QGIVYIDEIDKIS 192 >gi|116621146|ref|YP_823302.1| Lon-A peptidase [Candidatus Solibacter usitatus Ellin6076] gi|122254884|sp|Q026Q2|LON_SOLUE RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|116224308|gb|ABJ83017.1| Lon-A peptidase. Serine peptidase. MEROPS family S16 [Candidatus Solibacter usitatus Ellin6076] Length = 806 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 37/174 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L +A+ G F R + G V +A G + ++ Sbjct: 352 LCFVGPPGVGKTSLGMSIAKATGRKFVRMSLGGVRDEAEVRGHRRTYIGALPGQIIQMMK 411 Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 R+ +F +DE+ ++S+ + E+L P +D + V+ +LS Sbjct: 412 KAGTRNPVFMLDEVDKMSMDFRGDPSAALLEVLDPEQNFMFVDHYL-------DVEYDLS 464 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDLKT----IVQRGAKLTGL 201 + +A + + LQDR + IRL+ Y E+E ++ +V++ + TGL Sbjct: 465 QVFFVATANVMHTIPAALQDRMEV-IRLSGYTELEKMEIAKRFLVKKQIEATGL 517 >gi|320163523|gb|EFW40422.1| proteasome-activating nucleotidase [Capsaspora owczarzaki ATCC 30864] Length = 956 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 VL GPPG GKT LA+ VA E NF S S P + K G+ L + R V Sbjct: 611 VLLFGPPGTGKTLLARAVATESHANFLSVSVPDLVKGHVGESERTLRRVFARAVRLAPCV 670 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 671 VFIDEIDAL 679 >gi|308272158|emb|CBX28765.1| Cell division protease ftsH [uncultured Desulfobacterium sp.] Length = 609 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEAL-------DHVLFVGPPGLGKTTLAQVVAREL 78 T E+ G EA L +E K + VL +GPPG GKT LA+ +A E Sbjct: 151 TFEDVAGIEEAKEELSEIVEFLKEPKKYTRLGGRIPKGVLLMGPPGTGKTLLARAIAGEA 210 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 211 GVPFFSISG 219 >gi|260566356|ref|ZP_05836826.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis bv. 4 str. 40] gi|260155874|gb|EEW90954.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis bv. 4 str. 40] Length = 424 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|269796484|ref|YP_003315939.1| membrane protease FtsH catalytic subunit [Sanguibacter keddieii DSM 10542] gi|269098669|gb|ACZ23105.1| membrane protease FtsH catalytic subunit [Sanguibacter keddieii DSM 10542] Length = 684 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 198 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 228 >gi|257868305|ref|ZP_05647958.1| peptidase M41 [Enterococcus casseliflavus EC30] gi|257874422|ref|ZP_05654075.1| peptidase M41 [Enterococcus casseliflavus EC10] gi|257802419|gb|EEV31291.1| peptidase M41 [Enterococcus casseliflavus EC30] gi|257808586|gb|EEV37408.1| peptidase M41 [Enterococcus casseliflavus EC10] Length = 702 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254 >gi|256826672|ref|YP_003150631.1| membrane protease FtsH catalytic subunit [Cryptobacterium curtum DSM 15641] gi|256582815|gb|ACU93949.1| membrane protease FtsH catalytic subunit [Cryptobacterium curtum DSM 15641] Length = 759 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ VA E GV F S SG Sbjct: 230 CLLVGPPGTGKTLLARAVAGEAGVPFFSISG 260 >gi|256113665|ref|ZP_05454476.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella melitensis bv. 3 str. Ether] gi|265995025|ref|ZP_06107582.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 3 str. Ether] gi|262766138|gb|EEZ11927.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 3 str. Ether] Length = 424 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|325983081|ref|YP_004295483.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosomonas sp. AL212] gi|325532600|gb|ADZ27321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosomonas sp. AL212] Length = 425 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 116 NILLVGPTGSGKTLLAQTLARLLDVPFIMADATALTEAGYVGEDVENIIQKLLQKCNYDA 175 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 EKAQRGIVYIDEIDKIS 192 >gi|238925821|ref|YP_002939339.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656] gi|238877498|gb|ACR77205.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656] Length = 604 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCI 260 Query: 109 LFIDEI 114 +FIDEI Sbjct: 261 VFIDEI 266 >gi|257062950|ref|YP_003142622.1| membrane protease FtsH catalytic subunit [Slackia heliotrinireducens DSM 20476] gi|310946762|sp|C7N1I1|FTSH_SLAHD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|256790603|gb|ACV21273.1| membrane protease FtsH catalytic subunit [Slackia heliotrinireducens DSM 20476] Length = 783 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 L VGPPG GKT LA+ VA E V F S SG + G A+ + NL ++ + Sbjct: 321 CLLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVEMFVGVGASRVRNLFEQAKEAAPSI 380 Query: 109 LFIDEI 114 +FIDEI Sbjct: 381 IFIDEI 386 >gi|227876234|ref|ZP_03994350.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC 35243] gi|227843195|gb|EEJ53388.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC 35243] Length = 765 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 223 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSG 253 >gi|254462093|ref|ZP_05075509.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacterales bacterium HTCC2083] gi|206678682|gb|EDZ43169.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacteraceae bacterium HTCC2083] Length = 377 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 66 AKSNILLMGPTGCGKTLLAQTLARTLDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 125 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 126 YNVEKAQRGIVYIDEVDKIT 145 >gi|194098830|ref|YP_002001893.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae NCCP11945] gi|193934120|gb|ACF29944.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae NCCP11945] Length = 442 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 142 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 201 Query: 104 --EDRDVLFIDEIHRLS 118 +++IDEI ++S Sbjct: 202 EKAQHGIVYIDEIDKIS 218 >gi|171059223|ref|YP_001791572.1| ATP-dependent protease La [Leptothrix cholodnii SP-6] gi|170776668|gb|ACB34807.1| ATP-dependent protease La [Leptothrix cholodnii SP-6] Length = 805 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 38/188 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+L Q VAR G F R G V +A G + L+ Sbjct: 354 LCLVGPPGVGKTSLGQSVARATGRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKVLQSLS 413 Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + R+ LF +DEI +L S + E+L P D V V +LS Sbjct: 414 KVGVRNPLFLLDEIDKLGMDFRGDPSSALLEVLDPEQNHTFADHYV-------EVDFDLS 466 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----GAKLTGLAVTDEA 207 +A + + + L DR + IRL+ Y ++ +I QR K G+A T+ Sbjct: 467 DVMFVATSNSLN-IPPALLDRMEV-IRLSGYTEDEKVSIAQRYLLPKQLKNNGVAETELE 524 Query: 208 ACEIAMRS 215 E A+R+ Sbjct: 525 VTESAVRA 532 >gi|152992701|ref|YP_001358422.1| ATP-dependent protease ATP-binding subunit ClpX [Sulfurovum sp. NBC37-1] gi|151424562|dbj|BAF72065.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sulfurovum sp. NBC37-1] Length = 406 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103 A +VL +GP G GKT LAQ +AR L V + +AG D+ +LT L Sbjct: 104 AKSNVLLIGPTGSGKTLLAQTIARFLNVPIAIADATNLTEAGYVGEDVENILTKLLMEAD 163 Query: 104 -----EDRDVLFIDEIHRLS 118 ++ ++FIDEI +++ Sbjct: 164 GDPQRAEQGIVFIDEIDKIA 183 >gi|94994608|ref|YP_602706.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS10750] gi|94548116|gb|ABF38162.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes MGAS10750] Length = 135 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV 80 R +T +E GQ + LK +E+ K + H LF GP G GKT+ A++ A+ + Sbjct: 9 YRSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNC 63 Query: 81 NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 + P D+ +TN DV+ ID Sbjct: 64 PNQVDGEP--CNQCDICRDITNGSLEDVIEID 93 >gi|76154622|gb|AAX26071.2| SJCHGC04043 protein [Schistosoma japonicum] Length = 249 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 23/34 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ ++ + G+NF S GP + Sbjct: 36 VLLEGPPGCGKTLVAKALSNQAGLNFLSVKGPEV 69 >gi|15242534|ref|NP_198816.1| AAA-type ATPase family protein [Arabidopsis thaliana] gi|332007117|gb|AED94500.1| AAA-type ATPase family protein [Arabidopsis thaliana] Length = 470 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 + P+ EE + A SN K + + +A ++L+ GPPG GK+T+ +A L N Sbjct: 211 MDPKKKEEIVNDLIAFSNGKEYYKKI-GKAWKRGYLLY-GPPGTGKSTMISAMANLLNYN 268 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114 + +L LLT + ++ I++I Sbjct: 269 IYDLELTAVKNNSELKKLLTATSSKSIIVIEDI 301 >gi|24644411|ref|NP_731004.1| katanin p60-like 1, isoform B [Drosophila melanogaster] gi|281360136|ref|NP_001163521.1| katanin p60-like 1, isoform C [Drosophila melanogaster] gi|7296674|gb|AAF51954.1| katanin p60-like 1, isoform B [Drosophila melanogaster] gi|25009709|gb|AAN71030.1| AT05655p [Drosophila melanogaster] gi|220957924|gb|ACL91505.1| CG1193-PB [synthetic construct] gi|220960256|gb|ACL92664.1| CG1193-PB [synthetic construct] gi|272476826|gb|ACZ94820.1| katanin p60-like 1, isoform C [Drosophila melanogaster] Length = 669 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 426 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 485 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 486 IFIDEIDAL 494 >gi|58580657|ref|YP_199673.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622590|ref|YP_449962.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166710929|ref|ZP_02242136.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv. oryzicola BLS256] gi|81311961|sp|Q5H433|CLPX_XANOR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123522986|sp|Q2P6Y9|CLPX_XANOM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|58425251|gb|AAW74288.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366530|dbj|BAE67688.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 428 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 29/133 (21%) Query: 15 EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE----------ALDHVLF 59 + A SL +PR + E GQ+ A L V + R E A ++L Sbjct: 60 QSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILL 119 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108 VGP G GKT LA+ +AR L V F + +AG + + N+ D DV Sbjct: 120 VGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQ 179 Query: 109 ---LFIDEIHRLS 118 ++IDEI ++S Sbjct: 180 QGIVYIDEIDKIS 192 >gi|23501986|ref|NP_698113.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis 1330] gi|163843377|ref|YP_001627781.1| ATP-dependent protease ATP-binding subunit [Brucella suis ATCC 23445] gi|38257637|sp|Q8G0I5|CLPX_BRUSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189082486|sp|B0CGR0|CLPX_BRUSI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|23347936|gb|AAN30028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella suis 1330] gi|163674100|gb|ABY38211.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella suis ATCC 23445] Length = 424 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|115351961|ref|YP_773800.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia ambifaria AMMD] gi|170702051|ref|ZP_02892967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ambifaria IOP40-10] gi|171320791|ref|ZP_02909798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ambifaria MEX-5] gi|172060887|ref|YP_001808539.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia ambifaria MC40-6] gi|122322953|sp|Q0BEF7|CLPX_BURCM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238689158|sp|B1YRZ4|CLPX_BURA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|115281949|gb|ABI87466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ambifaria AMMD] gi|170133037|gb|EDT01449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ambifaria IOP40-10] gi|171093961|gb|EDT39075.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ambifaria MEX-5] gi|171993404|gb|ACB64323.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ambifaria MC40-6] Length = 423 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 DKAQRGIVYIDEIDKIS 192 >gi|71013254|ref|XP_758568.1| hypothetical protein UM02421.1 [Ustilago maydis 521] gi|46098226|gb|EAK83459.1| hypothetical protein UM02421.1 [Ustilago maydis 521] Length = 1293 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA +NF S GP Sbjct: 940 ILLYGPPGTGKTLLAKAVATSCSLNFFSVKGP 971 >gi|325568178|ref|ZP_08144619.1| cell division protein FtsH [Enterococcus casseliflavus ATCC 12755] gi|325158379|gb|EGC70530.1| cell division protein FtsH [Enterococcus casseliflavus ATCC 12755] Length = 702 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254 >gi|300711801|ref|YP_003737615.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3] gi|299125484|gb|ADJ15823.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3] Length = 403 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E F +G + G+ A L+ +L + V Sbjct: 185 VLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLFEVARSHEPAV 244 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 245 LFIDEIDAIA 254 >gi|300691405|ref|YP_003752400.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Ralstonia solanacearum PSI07] gi|299078465|emb|CBJ51117.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Ralstonia solanacearum PSI07] Length = 424 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 DKAQRGIVYIDEIDKIS 193 >gi|291557137|emb|CBL34254.1| membrane protease FtsH catalytic subunit [Eubacterium siraeum V10Sc8a] Length = 649 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL +GPPG GKT LA+ VA E V F S SG + G A+ + +L D+ + Sbjct: 206 VLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKHTPSI 265 Query: 109 LFIDEI 114 +FIDEI Sbjct: 266 IFIDEI 271 >gi|269102130|ref|ZP_06154827.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Photobacterium damselae subsp. damselae CIP 102761] gi|268162028|gb|EEZ40524.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Photobacterium damselae subsp. damselae CIP 102761] Length = 392 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 82 NILLIGPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 141 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 142 AKAERGIVYIDEIDKIS 158 >gi|257463899|ref|ZP_05628285.1| ATP-dependent protease La [Fusobacterium sp. D12] gi|317061428|ref|ZP_07925913.1| ATP-dependent protease La [Fusobacterium sp. D12] gi|313687104|gb|EFS23939.1| ATP-dependent protease La [Fusobacterium sp. D12] Length = 770 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 55/226 (24%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83 ++ K EA +L VGPPG+GKT+L + +A +G F R Sbjct: 330 YLAVKKLNPEAKGSILCLVGPPGVGKTSLVKSIADSMGRAFVRVSLGGVRDEAEIRGHRR 389 Query: 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE--------EILYP----AMED 131 + G + K + AL + V+ +DEI ++S ++ E+L P + ED Sbjct: 390 TYVGSMPGKI--MKALKEAGTNNPVILLDEIDKMSSDIKGDPASAMLEVLDPEQNKSFED 447 Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL--- 188 +D+ +LS+ +A + ++ PL DR I ++ E E L Sbjct: 448 HFIDM-----------PFDLSKVFFVATANSLYPVSRPLIDRMEIVELDSYTEYEKLHIA 496 Query: 189 -KTIVQRGAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRLLRR 228 + ++++ K G L++TD+A I P + R L+R Sbjct: 497 KQYLIKQARKENGLEKISLSITDKAISRIINEYTAEPGV--RNLKR 540 >gi|296127044|ref|YP_003634296.1| hypothetical protein Bmur_2020 [Brachyspira murdochii DSM 12563] gi|296018860|gb|ADG72097.1| Sigma 54 interacting domain protein [Brachyspira murdochii DSM 12563] Length = 411 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 30/139 (21%) Query: 10 RNVSQEDADISLLRPRT----LEEFT-GQ--------VEACSNLKVFIEAAKARAEA--- 53 + ++D +I +L P+ L+E+ GQ V ++ K ++A+ + + Sbjct: 52 KKSKEKDYEIKILPPKQIKSLLDEYVIGQNYAKKVLSVAVYNHYKRITQSAEDKNDVEIE 111 Query: 54 LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN----------- 102 +VL +GP G GKT LA+ +A+ L V F + +AG + + N Sbjct: 112 KSNVLLIGPTGSGKTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQNADG 171 Query: 103 ---LEDRDVLFIDEIHRLS 118 L ++ +++IDEI ++S Sbjct: 172 DIKLAEKGIIYIDEIDKIS 190 >gi|224079924|ref|XP_002305974.1| predicted protein [Populus trichocarpa] gi|222848938|gb|EEE86485.1| predicted protein [Populus trichocarpa] Length = 556 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL VGPPG GKT LA+ VA E GV F S S + G AA + +L + Sbjct: 304 VLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKSSPSI 363 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 364 IFIDEL 369 >gi|218197837|gb|EEC80264.1| hypothetical protein OsI_22232 [Oryza sativa Indica Group] Length = 951 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108 +L GPPG GKT LA+ +A E G NF S +G + A L L + R + Sbjct: 699 ILLFGPPGTGKTLLAKALATEAGANFISITGSNLTSKWFGDAEKLTKALFSFASRLAPVI 758 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 759 IFVDEVDSL 767 >gi|164662989|ref|XP_001732616.1| hypothetical protein MGL_0391 [Malassezia globosa CBS 7966] gi|159106519|gb|EDP45402.1| hypothetical protein MGL_0391 [Malassezia globosa CBS 7966] Length = 1091 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L G PG GKT LA VA+E G+NF S GP + Sbjct: 742 LLLYGFPGCGKTLLASAVAKECGLNFISVKGPEV 775 >gi|119222225|gb|ABL62310.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222227|gb|ABL62311.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222229|gb|ABL62312.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222231|gb|ABL62313.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222233|gb|ABL62314.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222235|gb|ABL62315.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222237|gb|ABL62316.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222239|gb|ABL62317.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222241|gb|ABL62318.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 199 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ ++ NL Sbjct: 2 NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 61 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 62 ERAQRGIVYIDEIDKIA 78 >gi|116075678|ref|ZP_01472937.1| cell division protein FtsH2 [Synechococcus sp. RS9916] gi|116066993|gb|EAU72748.1| cell division protein FtsH2 [Synechococcus sp. RS9916] Length = 615 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ VA E GV F S SG Sbjct: 196 CLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 226 >gi|119184765|ref|XP_001243250.1| hypothetical protein CIMG_07146 [Coccidioides immitis RS] Length = 697 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 516 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 547 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT +A A ELGV F + S P I +G+ L D + Sbjct: 211 VLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKAAPCL 270 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 271 VFIDEIDAIT 280 >gi|91783521|ref|YP_558727.1| ATP-dependent protease ATP-binding subunit [Burkholderia xenovorans LB400] gi|123358810|sp|Q13Z14|CLPX_BURXL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|91687475|gb|ABE30675.1| ClpX, ATPase regulatory subunit [Burkholderia xenovorans LB400] Length = 423 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 DKAQRGIVYIDEIDKIS 192 >gi|55380068|ref|YP_137918.1| proteasome-activating nucleotidase [Haloarcula marismortui ATCC 43049] gi|55232793|gb|AAV48212.1| proteasome-activating nucleotidase 2 [Haloarcula marismortui ATCC 43049] Length = 404 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VA E F +G + G+ A L+ +L E+ V Sbjct: 185 VLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLFELARQEEPAV 244 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 245 VFIDEIDAIA 254 >gi|68068609|ref|XP_676215.1| cell division cycle protein [Plasmodium berghei strain ANKA] gi|56495807|emb|CAH97250.1| cell division cycle protein 48 homologue, putative [Plasmodium berghei] Length = 500 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108 VL GPPG GKT +A+ VA E G F +GP V++K AG+ A L E+ + + Sbjct: 242 VLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAI 301 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 302 IFIDEIDSIA 311 >gi|305664431|ref|YP_003860718.1| putative transmembrane AAA-metalloprotease FtsH [Maribacter sp. HTCC2170] gi|88708448|gb|EAR00684.1| putative transmembrane AAA-metalloprotease FtsH [Maribacter sp. HTCC2170] Length = 669 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E V F S SG V A + L +D+ ++ Sbjct: 233 LLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKDKSPAII 292 Query: 110 FIDEI 114 FIDEI Sbjct: 293 FIDEI 297 >gi|158312162|ref|YP_001504670.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec] gi|158107567|gb|ABW09764.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec] Length = 753 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 201 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 231 >gi|328769715|gb|EGF79758.1| hypothetical protein BATDEDRAFT_89162 [Batrachochytrium dendrobatidis JAM81] Length = 1081 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L G PG GKT LA V++E G+NF S GP Sbjct: 772 LLLFGYPGCGKTMLASAVSKECGLNFISVKGP 803 >gi|330446592|ref|ZP_08310244.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490783|dbj|GAA04741.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 426 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|315124494|ref|YP_004066498.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018216|gb|ADT66309.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 233 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218 >gi|312897779|ref|ZP_07757195.1| ATP-dependent protease, Lon family [Megasphaera micronuciformis F0359] gi|310621163|gb|EFQ04707.1| ATP-dependent protease, Lon family [Megasphaera micronuciformis F0359] Length = 635 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 12/78 (15%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL--DHVLFVGPPGLGKTTLAQVV---AR 76 +RP+ +E GQ A +EA +++ ++ H+L GPPG+GKTT A+++ A+ Sbjct: 170 VRPQKMERIVGQERA-------VEAMRSKVASVYPQHILLYGPPGVGKTTAARIILEEAK 222 Query: 77 ELGVNFRSTSGPVIAKAG 94 +L S P + G Sbjct: 223 KLPYTPFSVDAPFVETDG 240 >gi|256810123|ref|YP_003127492.1| 26S proteasome subunit P45 family [Methanocaldococcus fervens AG86] gi|256793323|gb|ACV23992.1| 26S proteasome subunit P45 family [Methanocaldococcus fervens AG86] Length = 430 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108 +L GPPG GKT LA+ VARE F G + K G+ A L+ ++ + + Sbjct: 207 ILLYGPPGTGKTLLAKAVARETNATFIRVVGSELVKKFIGEGATLVKDIFKLAKEKAPSI 266 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 267 IFIDEIDAIA 276 >gi|288574818|ref|ZP_06393175.1| ATP-dependent metalloprotease FtsH [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570559|gb|EFC92116.1| ATP-dependent metalloprotease FtsH [Dethiosulfovibrio peptidovorans DSM 11002] Length = 640 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 8/73 (10%) Query: 23 RPR-TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVV 74 RP+ T ++ G E+ L+ IE K A VL +GPPG GKT LA+ Sbjct: 150 RPKVTFDDVAGCDESKEELQEVIEYLKDPSRFTKLGATVPKGVLLLGPPGTGKTLLARAC 209 Query: 75 ARELGVNFRSTSG 87 A E V F STSG Sbjct: 210 AGEAAVPFFSTSG 222 >gi|222153344|ref|YP_002562521.1| DNA polymerase III subunits gamma and tau [Streptococcus uberis 0140J] gi|222114157|emb|CAR42660.1| DNA polymerase III subunit gamma/tau [Streptococcus uberis 0140J] Length = 555 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 8/91 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 R ++ E GQ + LK +E+ K + H LF GP G GKT+ A++ A+ + Sbjct: 10 RSQSFSEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 + P DL +TN DV+ ID Sbjct: 65 HQVNGEPC--NQCDLCQDITNGSLEDVIEID 93 >gi|198453074|ref|XP_002137592.1| GA27309 [Drosophila pseudoobscura pseudoobscura] gi|198132203|gb|EDY68150.1| GA27309 [Drosophila pseudoobscura pseudoobscura] Length = 679 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 436 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 495 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 496 IFIDEIDAL 504 >gi|170692396|ref|ZP_02883559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia graminis C4D1M] gi|170142826|gb|EDT10991.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia graminis C4D1M] Length = 423 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 DKAQRGIVYIDEIDKIS 192 >gi|218848112|ref|YP_002454681.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842] gi|218546243|gb|ACK98636.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842] Length = 548 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP E GQ +++K I+ A A+ +F GP G GKTT+A+++A L Sbjct: 10 RPTNFSELIGQ----NHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSLNCES 65 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 + G + A+ N DVL ID Sbjct: 66 LNNEGEPCNECSQCKAIRGN-SHADVLEID 94 >gi|168032696|ref|XP_001768854.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679966|gb|EDQ66407.1| predicted protein [Physcomitrella patens subsp. patens] Length = 594 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL----LTNLEDRD---- 107 ++LF GPPG GKT A+V+A+E G+++ +G +A G A L N R Sbjct: 348 NMLFYGPPGTGKTMAAKVLAQESGLDYALMTGGDVAPLGANAVTKIHELFNWAGRTRRGL 407 Query: 108 VLFIDE 113 +LFIDE Sbjct: 408 LLFIDE 413 >gi|156547510|ref|XP_001603936.1| PREDICTED: similar to 26S proteasome regulatory complex ATPase RPT4 [Nasonia vitripennis] Length = 393 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED D+ T E G E L+ IE E V L Sbjct: 122 LVYNMSHEDPGDV------TYSEIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCL 175 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIF 235 Query: 111 IDEI 114 +DEI Sbjct: 236 MDEI 239 >gi|108756903|ref|YP_632232.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus DK 1622] gi|108460783|gb|ABF85968.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Myxococcus xanthus DK 1622] Length = 425 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ ++ NL Sbjct: 121 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNADYDV 180 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 181 EKASRGIVYIDEIDKIA 197 >gi|148227978|ref|NP_001082566.1| RAD17 homolog [Xenopus laevis] gi|47937773|gb|AAH72343.1| Rad17 protein [Xenopus laevis] Length = 674 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 12/106 (11%) Query: 11 NVSQEDADISLLRPRTLEEFT------GQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 + SQ D I RP E +VEA LK +E + + + +L GPPG Sbjct: 79 DYSQNDPWIDKYRPEIQAELAVHKKKIEEVEAW--LKTHVEK-RPQKQGGQILLLTGPPG 135 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF 110 GKT QV+ +E+G+ + P++ + L + DRD F Sbjct: 136 CGKTATIQVLTKEMGIQVQEWINPLMQ---EFKQDLPEVFDRDTRF 178 >gi|47220181|emb|CAG07322.1| unnamed protein product [Tetraodon nigroviridis] Length = 486 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 80/197 (40%), Gaps = 43/197 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L+ L + Sbjct: 241 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRVLFEMARFYAPTT 300 Query: 109 LFIDEI-----HRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATT 161 +FIDEI R + E +F Q+D M G P + S+ ++ A T Sbjct: 301 IFIDEIDSICSRRGTSDEHEASRRVKSEFLVQMDGM-GNTPDE-----DPSKMVMVLAAT 354 Query: 162 RVGL-----LTNPLQDRFGIP----------IRLNFYEIE-----DLKTIVQRGAKLTGL 201 L L+ R IP +++N E+E DL I ++ +G Sbjct: 355 NFPWDIDEALRRRLEKRIYIPLPSASGRAELLKINLKEVEVAEDVDLNVIAEKMEGYSGA 414 Query: 202 AVTD--EAACEIAMRSR 216 +T+ A +AMR R Sbjct: 415 DITNVCRDASMMAMRRR 431 >gi|325285489|ref|YP_004261279.1| ATP-dependent metalloprotease FtsH [Cellulophaga lytica DSM 7489] gi|324320943|gb|ADY28408.1| ATP-dependent metalloprotease FtsH [Cellulophaga lytica DSM 7489] Length = 660 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E V F S SG V A + L +D+ ++ Sbjct: 233 LLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKDKSPAII 292 Query: 110 FIDEI 114 FIDEI Sbjct: 293 FIDEI 297 >gi|299146823|ref|ZP_07039891.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23] gi|298517314|gb|EFI41195.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23] Length = 621 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + LK I K L H LF GP G+GKTT A++ A+ + Sbjct: 12 RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66 Query: 82 FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127 + G + A N+ + D + + + +VE++ P Sbjct: 67 TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126 Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 + F L E P ++ I ATT + + R I Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238 N +ED + A G+ EA IAM++ G R A + +V F + + Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237 Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275 I +++DA LL I GFD ++T ++ +F Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295 Query: 276 -GGGPVGIETISAGLS 290 G PV + + G S Sbjct: 296 VGKDPVTLPLLEVGAS 311 >gi|296195631|ref|XP_002745475.1| PREDICTED: spermatogenesis-associated protein 5, partial [Callithrix jacchus] Length = 617 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 362 VLLYGPPGTGKTMIARAVASEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 421 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 422 IFIDELDALC 431 >gi|291540574|emb|CBL13685.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis XB6B4] Length = 524 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 121 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 180 Query: 109 LFIDEI 114 +FIDEI Sbjct: 181 VFIDEI 186 >gi|307729639|ref|YP_003906863.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. CCGE1003] gi|323526046|ref|YP_004228199.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. CCGE1001] gi|307584174|gb|ADN57572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. CCGE1003] gi|323383048|gb|ADX55139.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. CCGE1001] Length = 423 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 DKAQRGIVYIDEIDKIS 192 >gi|257438589|ref|ZP_05614344.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165] gi|257198958|gb|EEU97242.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165] Length = 608 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 203 ILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 262 Query: 109 LFIDEI 114 +FIDEI Sbjct: 263 VFIDEI 268 >gi|240080536|ref|ZP_04725079.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae FA19] gi|240123698|ref|ZP_04736654.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae PID332] gi|240128399|ref|ZP_04741060.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae SK-93-1035] gi|268596668|ref|ZP_06130835.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae FA19] gi|268682330|ref|ZP_06149192.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae PID332] gi|268686798|ref|ZP_06153660.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae SK-93-1035] gi|268550456|gb|EEZ45475.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae FA19] gi|268622614|gb|EEZ55014.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae PID332] gi|268627082|gb|EEZ59482.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae SK-93-1035] Length = 414 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 +++IDEI ++S Sbjct: 174 EKAQHGIVYIDEIDKIS 190 >gi|221116859|ref|XP_002155743.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 500 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + TS + +K G+ L + Sbjct: 254 VLMVGPPGTGKTMLAKAVATECGTTFFNVTSSTLTSKYRGESEKLVRLLFEMARFYAPST 313 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 314 IFIDEIDSL 322 >gi|210623232|ref|ZP_03293671.1| hypothetical protein CLOHIR_01621 [Clostridium hiranonis DSM 13275] gi|210153769|gb|EEA84775.1| hypothetical protein CLOHIR_01621 [Clostridium hiranonis DSM 13275] Length = 668 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT L++ VA E GV F S SG Sbjct: 195 ILMVGPPGTGKTFLSKAVAGEAGVPFFSISG 225 >gi|254468529|ref|ZP_05081935.1| ATP-dependent Clp protease ATP-binding subunit ClpA [beta proteobacterium KB13] gi|207087339|gb|EDZ64622.1| ATP-dependent Clp protease ATP-binding subunit ClpA [beta proteobacterium KB13] Length = 750 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 35/181 (19%) Query: 9 SRNVSQEDADISLLR--PRTLEEFT-GQVEACSNLKVFIEAAKA----RAEALDHVLFVG 61 S+N++Q+D +S+LR R L+ GQ EA + L I+ A++ + + +F G Sbjct: 427 SKNINQDD--LSMLRNLDRDLKAIIFGQDEAINKLSTAIKMARSGLLSDNKPIGSFMFSG 484 Query: 62 PPGLGKTTLAQVVARELGVNF-----------RSTSGPVIAKAG----DLAALLTNLEDR 106 P G+GKT +A+ +A LG+ + S + A G D LT ++ Sbjct: 485 PTGVGKTEVAKQLAYTLGIELIRIDMSEFMERHAVSKLIGAPPGYVGFDQGGTLTESINK 544 Query: 107 D---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 + VL +DEI + V IL M++ G + KI+ TLI TT V Sbjct: 545 NPYAVLLLDEIEKAHPDVHNILLQIMDN-------GFLTDSNGRKIDFRNVTLI-MTTNV 596 Query: 164 G 164 G Sbjct: 597 G 597 >gi|148258950|ref|YP_001243535.1| cell division protein [Bradyrhizobium sp. BTAi1] gi|146411123|gb|ABQ39629.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1] Length = 630 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ +A E GV F S +G + G AA + +L ++ + Sbjct: 198 VLLVGPPGTGKTMLARAIAGEAGVPFLSINGSEFVEMFVGVGAARVRDLFEQARSMAPCI 257 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 258 IFIDELDAL 266 >gi|150399700|ref|YP_001323467.1| proteasome-activating nucleotidase [Methanococcus vannielii SB] gi|166199294|sp|A6UQT3|PAN_METVS RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|150012403|gb|ABR54855.1| 26S proteasome subunit P45 family [Methanococcus vannielii SB] Length = 407 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 8/89 (8%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108 VL GPPG GKT LA+ VARE +F G + K G+ A L+ ++ + + Sbjct: 185 VLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCI 244 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 +FIDEI ++ E L + Q LM Sbjct: 245 IFIDEIDAVASKRTESLTGGDREVQRTLM 273 >gi|121611286|ref|YP_999093.1| ATP-dependent protease ATP-binding subunit ClpX [Verminephrobacter eiseniae EF01-2] gi|121555926|gb|ABM60075.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Verminephrobacter eiseniae EF01-2] Length = 447 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 14/78 (17%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL----------- 103 ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 142 SNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCGYK 201 Query: 104 ---EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 202 VEPAQRGIVYIDEIDKIS 219 >gi|76581159|gb|ABA50634.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1710b] Length = 466 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 159 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 218 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 219 EKAQRGIVYIDEIDKIS 235 >gi|53719040|ref|YP_108026.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia pseudomallei K96243] gi|52209454|emb|CAH35405.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia pseudomallei K96243] Length = 430 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 123 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 182 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 183 EKAQRGIVYIDEIDKIS 199 >gi|21230440|ref|NP_636357.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769566|ref|YP_244328.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas campestris pv. campestris str. 8004] gi|188992774|ref|YP_001904784.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas campestris pv. campestris str. B100] gi|23813857|sp|Q8PBY5|CLPX_XANCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|81304479|sp|Q4URL5|CLPX_XANC8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|229485950|sp|B0RTF5|CLPX_XANCB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|21112002|gb|AAM40281.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574898|gb|AAY50308.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas campestris pv. campestris str. 8004] gi|167734534|emb|CAP52744.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas campestris pv. campestris] Length = 428 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 29/133 (21%) Query: 15 EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE----------ALDHVLF 59 + A SL +PR + E GQ+ A L V + R E A ++L Sbjct: 60 QSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDEVELAKSNILL 119 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108 VGP G GKT LA+ +AR L V F + +AG + + N+ D DV Sbjct: 120 VGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQ 179 Query: 109 ---LFIDEIHRLS 118 ++IDEI ++S Sbjct: 180 QGIVYIDEIDKIS 192 >gi|152964507|ref|YP_001360291.1| ATP-dependent metalloprotease FtsH [Kineococcus radiotolerans SRS30216] gi|151359024|gb|ABS02027.1| ATP-dependent metalloprotease FtsH [Kineococcus radiotolerans SRS30216] Length = 659 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFIEAAK----ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ + A+ VL GPPG GKT LA+ VA E GV F S SG Sbjct: 176 VEELHEIKEFLQDSSKFLAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233 >gi|323452123|gb|EGB07998.1| hypothetical protein AURANDRAFT_71725 [Aureococcus anophagefferens] Length = 1039 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 V+ GPPG GKT LA+ VA E GV F STSG Sbjct: 198 VILEGPPGTGKTLLARAVAGEAGVPFISTSG 228 >gi|321461635|gb|EFX72665.1| hypothetical protein DAPPUDRAFT_308117 [Daphnia pulex] Length = 389 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED D+ T E G E L+ IE E V L Sbjct: 118 LVYNMSHEDPGDV------TYSEIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCL 171 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 172 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIF 231 Query: 111 IDEI 114 +DEI Sbjct: 232 MDEI 235 >gi|269976860|ref|ZP_06183834.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1] gi|306819509|ref|ZP_07453216.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239] gi|269934691|gb|EEZ91251.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1] gi|304647801|gb|EFM45119.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239] Length = 765 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 223 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSG 253 >gi|119953249|ref|YP_945458.1| DNA polymerase III subunits gamma and tau [Borrelia turicatae 91E135] gi|119862020|gb|AAX17788.1| DNA polymerase III subunit gamma/tau [Borrelia turicatae 91E135] Length = 548 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 87/225 (38%), Gaps = 29/225 (12%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR L GQ LK IE K A A +F GP G+GKT+ A+ AR L Sbjct: 12 RPRDLNSLEGQDFVVETLKHSIENNKI-ANAY---IFSGPRGVGKTSSARAFARCLNCKI 67 Query: 83 RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQLD 135 GP I + + N D++ ID S+ I EEI++P Sbjct: 68 ----GPTIMPCDMCFSCKSIDNDNKLDIIEIDGASNTSVQDVKQIKEEIMFPPASSRYRV 123 Query: 136 LMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--YE 184 ++ E + N S I ATT V L + ++ R NF Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPSYIVFIFATTEVHKLPDTIKSRCQ---HFNFRLLP 180 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 ++ + +++ + DEA IA +S G+ R A L ++ Sbjct: 181 LDKVYEMLKHVCLEDNIKYEDEALRWIAYKSGGSVRDAYTLFDQI 225 >gi|153808560|ref|ZP_01961228.1| hypothetical protein BACCAC_02855 [Bacteroides caccae ATCC 43185] gi|149128882|gb|EDM20099.1| hypothetical protein BACCAC_02855 [Bacteroides caccae ATCC 43185] Length = 618 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 70/316 (22%), Positives = 112/316 (35%), Gaps = 64/316 (20%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + LK I K L H LF GP G+GKTT A++ A+ + Sbjct: 12 RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66 Query: 82 FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127 + G + A N+ + D + + + +VE++ P Sbjct: 67 TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126 Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 + F L E P ++ I ATT + + R I Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238 N +ED + A G++ EA IAM++ G R A + +V F + + Sbjct: 178 NRISVEDTVNHLSYVASKEGISAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237 Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275 I +++DA LL + GFD ++T ++ +F Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLANKVSDALLLFNDVLNKGFD--GSHFITGLSSHFRDLL 295 Query: 276 -GGGPVGIETISAGLS 290 G PV + + G S Sbjct: 296 VGKDPVTLPLLEVGAS 311 >gi|119222481|gb|ABL62438.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 198 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ ++ NL Sbjct: 2 NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 61 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 62 ERAQRGIVYIDEIDKIA 78 >gi|99081932|ref|YP_614086.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ruegeria sp. TM1040] gi|99038212|gb|ABF64824.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ruegeria sp. TM1040] Length = 792 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 23/161 (14%) Query: 10 RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPG 64 +NVS++DA++ +L+ GQ A L I+ A+A + + + LF GP G Sbjct: 468 KNVSKDDAEVLKDLEASLKRVVFGQDAAIDALSSAIKLARAGLREPEKPIGNYLFAGPTG 527 Query: 65 LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107 +GKT +A+ +A LGV R P D LLT+ D+ Sbjct: 528 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 587 Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 VL +DEI + V IL M++ QL G + R+V Sbjct: 588 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRTVNFRNV 628 >gi|42523611|ref|NP_968991.1| ATP-dependent protease LA [Bdellovibrio bacteriovorus HD100] gi|81617154|sp|Q6ML73|LON1_BDEBA RecName: Full=Lon protease 1; AltName: Full=ATP-dependent protease La 1 gi|39575817|emb|CAE79984.1| ATP-dependent protease LA [Bdellovibrio bacteriovorus HD100] Length = 793 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 50/193 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 ++F+GPPG+GKT+L + +AR LG + R G V A G + A + Sbjct: 350 LMFIGPPGVGKTSLGKSIARALGKKYVRVALGGVRDDAEIRGHRRTYIGALPGRIIAGIK 409 Query: 102 NLEDRDVLFI-DEIHRLS--------IIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 + D +FI DEI +L+ + E+L P +D LD Sbjct: 410 KAGENDPVFILDEIDKLTRGFGGDPASAMLEVLDPEQNNTFQDHYLD-----------TP 458 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV----------QRGAKL 198 +LS+ IA + + PL DR + I L+ Y +++ + I + G + Sbjct: 459 FDLSKVFFIATANSLEGIPLPLLDRMEV-IDLSGYTVDEKRQIARSHLWPKQLKEHGLEE 517 Query: 199 TGLAVTDEAACEI 211 L +TD+A ++ Sbjct: 518 NQLQITDQALTKL 530 >gi|68471103|ref|XP_720328.1| hypothetical protein CaO19.7035 [Candida albicans SC5314] gi|77022536|ref|XP_888712.1| hypothetical protein CaO19_7035 [Candida albicans SC5314] gi|46442191|gb|EAL01482.1| hypothetical protein CaO19.7035 [Candida albicans SC5314] gi|76573525|dbj|BAE44609.1| hypothetical protein [Candida albicans] gi|238883252|gb|EEQ46890.1| activator 1 41 kDa subunit [Candida albicans WO-1] Length = 363 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP++L + + Q +KV + K+ L H+LF GPPG GKT+ +A+EL Sbjct: 31 RPKSLNDVSSQEHT---IKVLTQTIKSGN--LPHMLFYGPPGTGKTSTILALAKEL 81 >gi|326676750|ref|XP_003200668.1| PREDICTED: peroxisome biogenesis factor 1-like [Danio rerio] Length = 1237 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL G PG GKT LA VA+E G+NF S GP Sbjct: 833 VLLYGAPGTGKTLLAGAVAKESGMNFISIKGP 864 >gi|311346940|gb|ADP90395.1| mitochondrial lon protease-like protein [Homo sapiens] Length = 959 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S E+ D++ + E+ G + + FI ++ R +L F GPPG+GKT++A Sbjct: 474 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 533 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G V A G + L + + ++ IDE+ Sbjct: 534 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 593 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ S + E+L P LD + V ++LS+ I + Sbjct: 594 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 646 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 647 EPLRDRMEM-INVSGYVAQEKLAIAER 672 >gi|307701252|ref|ZP_07638274.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16] gi|307613646|gb|EFN92893.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16] Length = 765 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 223 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSG 253 >gi|307266098|ref|ZP_07547643.1| PTS system transcriptional activator [Thermoanaerobacter wiegelii Rt8.B1] gi|306918880|gb|EFN49109.1| PTS system transcriptional activator [Thermoanaerobacter wiegelii Rt8.B1] Length = 971 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 71/169 (42%), Gaps = 40/169 (23%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKARA----EALDHVLFVGPPGLGKTTLAQVV---ARE 77 ++L F + + +LKV I AKA L H L VGP G GK+ LA+ + A E Sbjct: 125 KSLLSFKEIIGSEGSLKVQISLAKAAVLYPPHGL-HTLIVGPSGSGKSQLAEAMYNYAIE 183 Query: 78 LGVNFRSTSGPVIAKAGDLA-------------------------ALLTNLEDRDVLFID 112 G F + V+ D A A L D +LF+D Sbjct: 184 SG-KFNENAPFVVFNCADYADNPQLLMAQLFGYVKGAFTGADTAKAGLVEKADGGILFLD 242 Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161 E+HRL +EIL+ ++ + + GE S R +I LIAATT Sbjct: 243 EVHRLPSEGQEILFYLLDKGKFRRL-GETESTREAQI-----MLIAATT 285 >gi|300916540|ref|ZP_07133270.1| ATP-dependent metallopeptidase HflB [Escherichia coli MS 115-1] gi|300416164|gb|EFJ99474.1| ATP-dependent metallopeptidase HflB [Escherichia coli MS 115-1] Length = 416 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 8/92 (8%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 VE LK E + A VL VGPPG GKT LA+ VA E V F S SG + Sbjct: 170 VEIVDFLKNPQEYGRLGARIPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM 229 Query: 93 -AGDLAALLTNLEDR------DVLFIDEIHRL 117 G AA + +L ++ ++FIDE+ L Sbjct: 230 FVGVGAARVRDLFEQARGQAPAIIFIDELDAL 261 >gi|297849202|ref|XP_002892482.1| 26S proteasome aaa-ATPase subunit rpt5B [Arabidopsis lyrata subsp. lyrata] gi|297338324|gb|EFH68741.1| 26S proteasome aaa-ATPase subunit rpt5B [Arabidopsis lyrata subsp. lyrata] Length = 406 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 6/64 (9%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA------LLTNLEDRDVLF 110 VL GPPG GKT +A+ A + F +GP + GD A LL + ++F Sbjct: 198 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLMFIGDGAKLVRDAFLLAKEKSPCIIF 257 Query: 111 IDEI 114 IDEI Sbjct: 258 IDEI 261 >gi|283046720|ref|NP_001164306.1| peroxisome biogenesis factor 1 [Danio rerio] gi|154200022|gb|ABS71030.1| peroxin 1 [Danio rerio] Length = 1237 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL G PG GKT LA VA+E G+NF S GP Sbjct: 833 VLLYGAPGTGKTLLAGAVAKESGMNFISIKGP 864 >gi|254704396|ref|ZP_05166224.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis bv. 3 str. 686] gi|261755074|ref|ZP_05998783.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis bv. 3 str. 686] gi|261744827|gb|EEY32753.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis bv. 3 str. 686] Length = 424 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191 >gi|261205028|ref|XP_002627251.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis SLH14081] gi|239592310|gb|EEQ74891.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis SLH14081] gi|327348452|gb|EGE77309.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis ATCC 18188] Length = 389 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ Q + L+ ++A+ L H+LF GPPG GKT+ +A+ L Sbjct: 40 RPKTLDDVASQEHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 90 >gi|225425863|ref|XP_002266185.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 825 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 19/31 (61%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 L GPPG GKT +A+ VA E G NF GP Sbjct: 592 LLYGPPGCGKTLIAKAVANEAGANFIHIKGP 622 >gi|254526680|ref|ZP_05138732.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202] gi|221538104|gb|EEE40557.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202] Length = 584 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL +GPPG GKT LA+ +A E GV F S S V A + L + +++ + Sbjct: 170 VLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCI 229 Query: 109 LFIDEIHRL 117 +FIDEI + Sbjct: 230 IFIDEIDSI 238 >gi|209521457|ref|ZP_03270165.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. H160] gi|209498113|gb|EDZ98260.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. H160] Length = 423 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 DKAQRGIVYIDEIDKIS 192 >gi|195146352|ref|XP_002014150.1| GL24523 [Drosophila persimilis] gi|194103093|gb|EDW25136.1| GL24523 [Drosophila persimilis] Length = 677 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 434 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 493 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 494 IFIDEIDAL 502 >gi|241663133|ref|YP_002981493.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia pickettii 12D] gi|309781949|ref|ZP_07676680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia sp. 5_7_47FAA] gi|240865160|gb|ACS62821.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia pickettii 12D] gi|308919293|gb|EFP64959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia sp. 5_7_47FAA] Length = 424 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 DKAQRGIVYIDEIDKIS 193 >gi|149698244|ref|XP_001502977.1| PREDICTED: spermatogenesis associated 5 isoform 1 [Equus caballus] Length = 894 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 391 VLLYGPPGTGKTMIARAVANEVGAYVSIINGPEIISKFYGETEARLRQIFAEATLRHPSI 450 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 451 IFIDELDALC 460 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 665 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 696 >gi|186475777|ref|YP_001857247.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia phymatum STM815] gi|238691290|sp|B2JGL6|CLPX_BURP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|184192236|gb|ACC70201.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia phymatum STM815] Length = 423 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 DKAQRGIVYIDEIDKIS 192 >gi|119719222|ref|YP_919717.1| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5] gi|119524342|gb|ABL77714.1| AAA family ATPase, CDC48 subfamily [Thermofilum pendens Hrk 5] Length = 732 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ VA E NF S GP V +K G+ + L + + Sbjct: 493 ILLYGPPGTGKTLLAKAVATESEANFVSIKGPEVYSKWVGESERAIRELFRKARQVAPSI 552 Query: 109 LFIDEIHRLS 118 +FIDEI L+ Sbjct: 553 IFIDEIDALA 562 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD----V 108 +L GPPG GKT LA+ VA E F + +GP I G+ L + E ++ + Sbjct: 220 ILLYGPPGTGKTLLAKAVANETDAYFIAINGPEIMSKFYGESEQRLREIFEEAKEHAPAI 279 Query: 109 LFIDEIHRLSIIVEEI 124 +FIDEI ++ EE+ Sbjct: 280 IFIDEIDAIAPKREEV 295 >gi|328850881|gb|EGG00041.1| AAA ATPase [Melampsora larici-populina 98AG31] Length = 745 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA E NF S GP Sbjct: 479 ILLWGPPGCGKTLLAKAVANESQANFISVKGP 510 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L GPPG GKT LA ++ +LG+ + S I +G+ + ++ D+ + Sbjct: 142 LLLCGPPGCGKTMLASAISNQLGITLINVSSTSIVSGMSGESEKAIRDIFDQATKQAPCL 201 Query: 109 LFIDEIHRLS 118 LFIDEI ++ Sbjct: 202 LFIDEIDAIT 211 >gi|329962190|ref|ZP_08300197.1| ATPase family protein [Bacteroides fluxus YIT 12057] gi|328530477|gb|EGF57351.1| ATPase family protein [Bacteroides fluxus YIT 12057] Length = 324 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 115/288 (39%), Gaps = 71/288 (24%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106 HVL G PG+ KT LA++VAR + +F R P + + L + N+++ Sbjct: 48 HVLIEGVPGVAKTLLARLVARLIDADFSRIQFTPDLMPSDVLGTTVFNMKNSEFDFHRGP 107 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 DV+ +DEI+R + L+ ME+ Q + +G + R + +T++A Sbjct: 108 VFADVVLVDEINRAPAKTQAALFEVMEERQASI---DGTTYRMGAL----YTILAT---- 156 Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223 NP++ Q G A D +I M G P + Sbjct: 157 ---QNPVE---------------------QEGTYKLPEAQLDRFLMKITM---GYPSVDE 189 Query: 224 R--LLRRVRDFAEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARN----- 274 +L R A + + IT I A LL L +D++ D+ LRY+ +I Sbjct: 190 EVDILERHHTNASLVKLENITPVITKAELLELRRLMDRVFVDRTLLRYIALIVEQTRTSK 249 Query: 275 ---FGGGP-VGIETISA----GLSEPRDAI--EDL--IEPYMIQQGFI 310 G P + + A L + RD + ED+ + PY++Q I Sbjct: 250 SVYLGASPRASVAMLQASKAYALLQGRDFVTPEDIKSVAPYVLQHRLI 297 >gi|325675047|ref|ZP_08154734.1| ATP-dependent metalloprotease FtsH [Rhodococcus equi ATCC 33707] gi|325554633|gb|EGD24308.1| ATP-dependent metalloprotease FtsH [Rhodococcus equi ATCC 33707] Length = 777 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ AR +AL VL GPPG GKT LA+ VA E GV F + SG Sbjct: 175 VEELYEIKDFLQN-PARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISG 232 >gi|239999117|ref|ZP_04719041.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae 35/02] gi|240113095|ref|ZP_04727585.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae MS11] gi|268594953|ref|ZP_06129120.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae 35/02] gi|268599181|ref|ZP_06133348.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae MS11] gi|268548342|gb|EEZ43760.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae 35/02] gi|268583312|gb|EEZ47988.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae MS11] Length = 414 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 +++IDEI ++S Sbjct: 174 EKAQHGIVYIDEIDKIS 190 >gi|239611536|gb|EEQ88523.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis ER-3] Length = 389 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ Q + L+ ++A+ L H+LF GPPG GKT+ +A+ L Sbjct: 40 RPKTLDDVASQEHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 90 >gi|227538075|ref|ZP_03968124.1| ATP-dependent protease ATP-binding subunit [Sphingobacterium spiritivorum ATCC 33300] gi|300772704|ref|ZP_07082574.1| ATP-dependent Clp protease ATP-binding subunit [Sphingobacterium spiritivorum ATCC 33861] gi|227242151|gb|EEI92166.1| ATP-dependent protease ATP-binding subunit [Sphingobacterium spiritivorum ATCC 33300] gi|300761007|gb|EFK57833.1| ATP-dependent Clp protease ATP-binding subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 416 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +++ VG G GKT LA+ VA+ L V F V+ +AG D+ ++LT L Sbjct: 112 NLIIVGETGTGKTLLAKTVAKILNVPFSIVDATVLTEAGYVGEDVESILTRLLQAADYDV 171 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 172 AAAERGIIYIDEIDKIA 188 >gi|212696597|ref|ZP_03304725.1| hypothetical protein ANHYDRO_01137 [Anaerococcus hydrogenalis DSM 7454] gi|212676328|gb|EEB35935.1| hypothetical protein ANHYDRO_01137 [Anaerococcus hydrogenalis DSM 7454] Length = 402 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 30/134 (22%) Query: 15 EDADISLLRPRTLEEFTGQV-----EACSNLKVFIEAAKARAEA-----------LDHVL 58 ++ DI L +PR ++E+ Q A L V + R + ++L Sbjct: 53 KNMDIELAKPREIKEYLDQYVIQQEMAKKTLSVSVYNHYKRINSNYDKDDGVELQKSNIL 112 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD---- 107 +GP G GKT LAQ +A++L V F + +AG + + N+ D D Sbjct: 113 MLGPTGSGKTLLAQTLAKKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIELA 172 Query: 108 ---VLFIDEIHRLS 118 +++IDEI +++ Sbjct: 173 QTGIIYIDEIDKIT 186 >gi|194745470|ref|XP_001955211.1| GF16351 [Drosophila ananassae] gi|190628248|gb|EDV43772.1| GF16351 [Drosophila ananassae] Length = 669 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 426 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 485 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 486 IFIDEIDAL 494 >gi|189219178|ref|YP_001939819.1| MoxR-like ATPase [Methylacidiphilum infernorum V4] gi|161075757|gb|ABX56626.1| ATPase [Methylacidiphilum infernorum V4] gi|189186036|gb|ACD83221.1| MoxR-like ATPase [Methylacidiphilum infernorum V4] Length = 309 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 18/99 (18%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNF-----------------RSTSGPVIAKAGD 95 AL VL GPPG+GKT LA+ VA+ +G ++ G ++A Sbjct: 49 ALSAVLLDGPPGVGKTFLAKSVAKAIGAKLLLFQFFPGCGKEELLRDKTIDGALVAGIIP 108 Query: 96 LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 L A+ ++LE + VL ++E+ + + V+ L + + Q+ Sbjct: 109 L-AIASSLEKKTVLILNELDKAEVAVDSFLLDFINEAQV 146 >gi|164659848|ref|XP_001731048.1| hypothetical protein MGL_2047 [Malassezia globosa CBS 7966] gi|159104946|gb|EDP43834.1| hypothetical protein MGL_2047 [Malassezia globosa CBS 7966] Length = 987 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 99/234 (42%), Gaps = 38/234 (16%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 +L VGPPG GKT++A+ +A L F R + G V +A G + A L Sbjct: 526 LLLVGPPGTGKTSIARSLAAALQRPFVRLSLGGVRDEAEIRGHRRTYVGALPGSIVASLR 585 Query: 102 NLEDRD-VLFIDEIHRLSIIVEEILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLI 157 D V+ +DE+ +LS + P +E L+ +V +NLSR I Sbjct: 586 KARASDCVMLLDELDKLSNGMGFHGDPTAAMLEVLDLEQNHTFKDHYLNVPVNLSRVIFI 645 Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLAVTDEA 207 A + + PL DR + + Y ++ I QR G L+ +A++ E Sbjct: 646 ATANSLDTIPEPLLDRVDT-VHVAGYTYDEKVAIAQRHLLPKQVAVHGLTLSNVAMSHEI 704 Query: 208 ACEIAMRS------RGTPRIAGRLLR-RVRDFAEV-AHAKTITREIADAALLRL 253 IA R R G ++R + ++AE + T T EI+ A LLR+ Sbjct: 705 LMTIAQSYTREAGVRTMERRIGDVVRAKAVEYAESRGGSATYTPEISQADLLRI 758 >gi|187928949|ref|YP_001899436.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia pickettii 12J] gi|238691846|sp|B2UFQ3|CLPX_RALPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|187725839|gb|ACD27004.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia pickettii 12J] Length = 424 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 DKAQRGIVYIDEIDKIS 193 >gi|119222469|gb|ABL62432.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222471|gb|ABL62433.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222473|gb|ABL62434.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222475|gb|ABL62435.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222477|gb|ABL62436.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222479|gb|ABL62437.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222483|gb|ABL62439.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222485|gb|ABL62440.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222487|gb|ABL62441.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 197 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ ++ NL Sbjct: 1 NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 60 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 61 ERAQRGIVYIDEIDKIA 77 >gi|119222243|gb|ABL62319.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222245|gb|ABL62320.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222247|gb|ABL62321.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222249|gb|ABL62322.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222251|gb|ABL62323.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222253|gb|ABL62324.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 198 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ ++ NL Sbjct: 1 NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 60 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 61 ERAQRGIVYIDEIDKIA 77 >gi|161524523|ref|YP_001579535.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia multivorans ATCC 17616] gi|189350721|ref|YP_001946349.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia multivorans ATCC 17616] gi|221198215|ref|ZP_03571261.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans CGD2M] gi|221209203|ref|ZP_03582195.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans CGD2] gi|221215058|ref|ZP_03588025.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans CGD1] gi|238687053|sp|A9AJR1|CLPX_BURM1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|160341952|gb|ABX15038.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans ATCC 17616] gi|189334743|dbj|BAG43813.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia multivorans ATCC 17616] gi|221164994|gb|EED97473.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans CGD1] gi|221170941|gb|EEE03396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans CGD2] gi|221182147|gb|EEE14548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans CGD2M] Length = 423 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 DKAQRGIVYIDEIDKIS 192 >gi|187923897|ref|YP_001895539.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia phytofirmans PsJN] gi|296157828|ref|ZP_06840662.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. Ch1-1] gi|238689607|sp|B2T404|CLPX_BURPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|187715091|gb|ACD16315.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia phytofirmans PsJN] gi|295892074|gb|EFG71858.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. Ch1-1] Length = 423 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 176 DKAQRGIVYIDEIDKIS 192 >gi|32266682|ref|NP_860714.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter hepaticus ATCC 51449] gi|46576465|sp|Q7VGY5|CLPX_HELHP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|32262733|gb|AAP77780.1| ATP-dependent Clp protease [Helicobacter hepaticus ATCC 51449] Length = 426 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 41/158 (25%) Query: 6 GLLSRN--VSQEDADISLLRPRTL-----EEFTGQVEA--CSNLKVFIEAAKARAEALD- 55 G L++N QE DI P+ L E GQ EA ++ V+ + +A +L Sbjct: 46 GYLNKNPQQDQEAIDIKTPSPKELKAKLDEYVIGQDEAKRVFSVAVYNHYKRIKANSLSE 105 Query: 56 -----------------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG---- 94 ++L +GP G GKT +AQ +AR L + + + +AG Sbjct: 106 EEMPNPILQDDVELSKSNILLIGPTGSGKTLMAQTLARFLDIPIAISDATSLTEAGYVGE 165 Query: 95 DLAALLTNL----------EDRDVLFIDEIHRLSIIVE 122 D+ +LT L ++ ++FIDEI ++S + E Sbjct: 166 DVENILTRLLQAADGDVKKAEKGIVFIDEIDKISRLSE 203 >gi|21396489|ref|NP_004784.2| lon protease homolog, mitochondrial precursor [Homo sapiens] gi|12644239|sp|P36776|LONM_HUMAN RecName: Full=Lon protease homolog, mitochondrial; AltName: Full=LONHs; AltName: Full=Lon protease-like protein; Short=LONP; AltName: Full=Mitochondrial ATP-dependent protease Lon; AltName: Full=Serine protease 15; Flags: Precursor gi|4580549|gb|AAD24414.1|AF059309_1 LON protease [Homo sapiens] gi|12652953|gb|AAH00235.1| Lon peptidase 1, mitochondrial [Homo sapiens] gi|119589557|gb|EAW69151.1| protease, serine, 15, isoform CRA_a [Homo sapiens] gi|119589560|gb|EAW69154.1| protease, serine, 15, isoform CRA_a [Homo sapiens] gi|123989499|gb|ABM83881.1| protease, serine, 15 [synthetic construct] gi|123999245|gb|ABM87201.1| protease, serine, 15 [synthetic construct] gi|311346898|gb|ADP90374.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346900|gb|ADP90375.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346902|gb|ADP90376.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346904|gb|ADP90377.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346906|gb|ADP90378.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346908|gb|ADP90379.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346910|gb|ADP90380.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346912|gb|ADP90381.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346914|gb|ADP90382.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346916|gb|ADP90383.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346918|gb|ADP90384.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346920|gb|ADP90385.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346922|gb|ADP90386.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346926|gb|ADP90388.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346928|gb|ADP90389.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346930|gb|ADP90390.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346932|gb|ADP90391.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346934|gb|ADP90392.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346936|gb|ADP90393.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346938|gb|ADP90394.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346942|gb|ADP90396.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346944|gb|ADP90397.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346946|gb|ADP90398.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346948|gb|ADP90399.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346950|gb|ADP90400.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346952|gb|ADP90401.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346954|gb|ADP90402.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346956|gb|ADP90403.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346958|gb|ADP90404.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346960|gb|ADP90405.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346962|gb|ADP90406.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346964|gb|ADP90407.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346966|gb|ADP90408.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346968|gb|ADP90409.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346970|gb|ADP90410.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346972|gb|ADP90411.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346974|gb|ADP90412.1| mitochondrial lon protease-like protein [Homo sapiens] gi|311346976|gb|ADP90413.1| mitochondrial lon protease-like protein [Homo sapiens] Length = 959 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S E+ D++ + E+ G + + FI ++ R +L F GPPG+GKT++A Sbjct: 474 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 533 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G V A G + L + + ++ IDE+ Sbjct: 534 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 593 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ S + E+L P LD + V ++LS+ I + Sbjct: 594 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 646 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 647 EPLRDRMEM-INVSGYVAQEKLAIAER 672 >gi|17546431|ref|NP_519833.1| ATP-dependent protease ATP-binding subunit [Ralstonia solanacearum GMI1000] gi|21263463|sp|Q8XYP6|CLPX_RALSO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|17428729|emb|CAD15414.1| probable atp-dependent clp protease atp-binding subunit clpx protein [Ralstonia solanacearum GMI1000] Length = 424 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 DKAQRGIVYIDEIDKIS 193 >gi|194336865|ref|YP_002018659.1| AAA family ATPase, CDC48 subfamily [Pelodictyon phaeoclathratiforme BU-1] gi|194309342|gb|ACF44042.1| AAA family ATPase, CDC48 subfamily [Pelodictyon phaeoclathratiforme BU-1] Length = 715 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 ++ G PG GKT LA+ +A E GVNF S GP I Sbjct: 493 IILYGKPGTGKTYLAKALASESGVNFISVKGPQI 526 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNL------EDRDV 108 V GPPG GKT + + VA+E F + SGP I G+ A + N+ + Sbjct: 218 VFLYGPPGTGKTLIVRAVAQETDAYFINISGPEIMGKYYGESEARVRNIFAEAQSHAPSI 277 Query: 109 LFIDEI 114 +FIDEI Sbjct: 278 IFIDEI 283 >gi|66357178|ref|XP_625767.1| CDC48 like AAA ATpase [Cryptosporidium parvum Iowa II] gi|46226983|gb|EAK87949.1| CDC48 like AAA ATpase [Cryptosporidium parvum Iowa II] Length = 891 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 9/74 (12%) Query: 24 PRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74 P+T + G E LK +E +E ++ VL GPPG KT +A+ V Sbjct: 560 PKTDWNDIGGYEEVKEQLKECVEWPLIHSELFEYMKIKPPSGVLLYGPPGCSKTLMAKAV 619 Query: 75 ARELGVNFRSTSGP 88 A E +NF S GP Sbjct: 620 ATESKMNFISVKGP 633 >gi|322387323|ref|ZP_08060933.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus infantis ATCC 700779] gi|321141852|gb|EFX37347.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus infantis ATCC 700779] Length = 410 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L N+ Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 E--DRDVLFIDEIHRLS 118 E +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|317405212|gb|EFV85551.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Achromobacter xylosoxidans C54] Length = 432 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 +++ +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEV 174 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRAIIYIDEIDKIS 191 >gi|317164409|gb|ADV07950.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae TCDC-NG08107] Length = 442 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 142 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 201 Query: 104 --EDRDVLFIDEIHRLS 118 +++IDEI ++S Sbjct: 202 EKAQHGIVYIDEIDKIS 218 >gi|293606139|ref|ZP_06688504.1| ATP-dependent Clp protease ATP-binding subunit [Achromobacter piechaudii ATCC 43553] gi|292815594|gb|EFF74710.1| ATP-dependent Clp protease ATP-binding subunit [Achromobacter piechaudii ATCC 43553] Length = 432 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 +++ +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEV 174 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRAIIYIDEIDKIS 191 >gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi] gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi] Length = 351 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 7/73 (9%) Query: 11 NVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68 N S DA I RP L + E S ++ I+ K L H+L GPPG GKT Sbjct: 5 NSSSSDAKMWIEKYRPHELTDLLSHTEIISTIQRLIDGGK-----LPHLLLYGPPGTGKT 59 Query: 69 TLAQVVARELGVN 81 + +A++L N Sbjct: 60 STVLAIAKKLFGN 72 >gi|303320579|ref|XP_003070289.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|240109975|gb|EER28144.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] Length = 762 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 537 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 568 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT +A A ELGV F + S P I +G+ L D + Sbjct: 232 VLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKAAPCL 291 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 292 VFIDEIDAIT 301 >gi|240013975|ref|ZP_04720888.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae DGI18] gi|240016417|ref|ZP_04722957.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae FA6140] gi|240121542|ref|ZP_04734504.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae PID24-1] Length = 414 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 +++IDEI ++S Sbjct: 174 EKAQHGIVYIDEIDKIS 190 >gi|229494160|ref|ZP_04387923.1| cell division protease FtsH [Rhodococcus erythropolis SK121] gi|229318522|gb|EEN84380.1| cell division protease FtsH [Rhodococcus erythropolis SK121] Length = 850 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ AR +AL VL GPPG GKT LA+ VA E GV F + SG Sbjct: 167 VEELYEIKDFLQN-PARYQALGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISG 224 >gi|222632348|gb|EEE64480.1| hypothetical protein OsJ_19330 [Oryza sativa Japonica Group] Length = 504 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 14/81 (17%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LA+ +AR V F I +AG D+ +++ NL Sbjct: 121 NILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVESIICNLLAAAKFNV 180 Query: 104 --EDRDVLFIDEIHRLSIIVE 122 +R +++IDE+ +L VE Sbjct: 181 EATERGIVYIDEVDKLIKKVE 201 >gi|222054983|ref|YP_002537345.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32] gi|221564272|gb|ACM20244.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32] Length = 616 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T E+ G + LK ++ K D +L VGPPG GKT LA+ VA E Sbjct: 172 TFEDVAGMENSKQELKEMVDYLKNPKRFQDIGGKVPKGILLVGPPGTGKTLLARAVAGEA 231 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEI 114 GV F S S V A + L +N + ++FIDE+ Sbjct: 232 GVAFFSISASQFIEMFVGVGASRVRDLFSNAKKAAPSIVFIDEL 275 >gi|218510874|ref|ZP_03508752.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli Brasil 5] Length = 324 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 51 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 110 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 111 YNVERAQRGIVYIDEVDKIS 130 >gi|189462224|ref|ZP_03011009.1| hypothetical protein BACCOP_02907 [Bacteroides coprocola DSM 17136] gi|189431077|gb|EDV00062.1| hypothetical protein BACCOP_02907 [Bacteroides coprocola DSM 17136] Length = 414 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103 +++ VG G GKT LA+ +A+ L V F V+ +AG D+ ++LT N+ Sbjct: 114 NIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNV 173 Query: 104 E--DRDVLFIDEIHRLS 118 E +R ++FIDEI +++ Sbjct: 174 EEAERGIVFIDEIDKIA 190 >gi|239827923|ref|YP_002950547.1| ATP-dependent protease LonB [Geobacillus sp. WCH70] gi|239808216|gb|ACS25281.1| ATP-dependent protease LonB [Geobacillus sp. WCH70] Length = 556 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69 R++S + +RP++ E+ GQ + LK + + HV+ GPPG+GKT Sbjct: 51 RSISLTEPLAEKVRPKSFEDIVGQEDGIKALKAALCGPNPQ-----HVIIYGPPGVGKTA 105 Query: 70 LAQVVARELGVN 81 A++V E N Sbjct: 106 AARLVLEEAKKN 117 >gi|169831648|ref|YP_001717630.1| AAA family ATPase [Candidatus Desulforudis audaxviator MP104C] gi|169638492|gb|ACA59998.1| AAA family ATPase, CDC48 subfamily [Candidatus Desulforudis audaxviator MP104C] Length = 753 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L G PG GKT +A+ VA E GVNF S GP + Sbjct: 510 ILLHGSPGTGKTLIAKAVANESGVNFISVKGPAL 543 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR--- 106 EA VL GPPG GKT +A+ VA E +F +GP I G+ A L + + Sbjct: 232 EAPKGVLLHGPPGTGKTLIARAVANETDAHFFHVNGPEIIHKFYGESEANLRGIFEEAGK 291 Query: 107 ---DVLFIDEIHRLS 118 ++F+DEI ++ Sbjct: 292 NAPSIIFLDEIDAIA 306 >gi|50303471|ref|XP_451677.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49640809|emb|CAH02070.1| KLLA0B03234p [Kluyveromyces lactis] Length = 804 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 9/82 (10%) Query: 18 DISLLRPRTL-EEFTGQVEACSNLKVFI----EAAKARAE----ALDHVLFVGPPGLGKT 68 +I L P+ ++ GQ E +K I EAA+ A+ A VL GPPG KT Sbjct: 528 EIFLETPKVYWDDIGGQEELKQKMKEMIQLPLEAAETFAKLGVSAPKGVLLYGPPGCSKT 587 Query: 69 TLAQVVARELGVNFRSTSGPVI 90 A+ +A E G+NF + GP I Sbjct: 588 LTAKALATESGINFLAVKGPEI 609 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108 +L GPPG GKT L + VA E + + SGP I G+ A L ++ + + Sbjct: 307 ILLHGPPGTGKTMLLRCVANETDAHILTISGPSIVSKYLGETEAALRDIFNEAKRYQPSI 366 Query: 109 LFIDEIHRLS 118 +FIDEI L+ Sbjct: 367 IFIDEIDSLA 376 >gi|20808395|ref|NP_623566.1| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4] gi|254479371|ref|ZP_05092706.1| ATP-dependent metallopeptidase HflB subfamily protein [Carboxydibrachium pacificum DSM 12653] gi|20517008|gb|AAM25170.1| ATP-dependent Zn proteases [Thermoanaerobacter tengcongensis MB4] gi|214034684|gb|EEB75423.1| ATP-dependent metallopeptidase HflB subfamily protein [Carboxydibrachium pacificum DSM 12653] Length = 510 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 45/104 (43%), Gaps = 15/104 (14%) Query: 26 TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 T ++ G E LKV I+ K A+ +LF GPPG GKT LA +A E Sbjct: 82 TFKDVAGLDEVIEELKVIIDFMTNTEKYNKMGAKIPKGILFYGPPGTGKTLLATALAGET 141 Query: 79 GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEI 114 F S SG V A + AL + ++FIDEI Sbjct: 142 NSTFISASGSEFVEKYVGVGASRIRALFAKAKKNAPSIIFIDEI 185 >gi|260063604|ref|YP_003196684.1| putative transmembrane AAA-metalloprotease FtsH [Robiginitalea biformata HTCC2501] gi|88783049|gb|EAR14222.1| putative transmembrane AAA-metalloprotease FtsH [Robiginitalea biformata HTCC2501] Length = 696 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L VGPPG GKT LA+ VA E V F S SG V A + L +D+ ++ Sbjct: 233 LLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKDKSPAII 292 Query: 110 FIDEI 114 FIDEI Sbjct: 293 FIDEI 297 >gi|325959789|ref|YP_004291255.1| AAA family ATPase [Methanobacterium sp. AL-21] gi|325331221|gb|ADZ10283.1| AAA family ATPase, CDC48 subfamily [Methanobacterium sp. AL-21] Length = 729 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77 T E+ G E ++ IE R E + VL GPPG GKT LA+ VA E Sbjct: 201 TYEDIGGLKEEVKKVREMIEIPLKRPELFERLGIAPPKGVLMHGPPGTGKTLLAKAVANE 260 Query: 78 LGVNFRSTSGPVI 90 +F + +GP I Sbjct: 261 SDAHFIAINGPEI 273 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF + GP Sbjct: 512 VLIYGPPGTGKTLLAKAVANESDANFIAVKGP 543 >gi|325105012|ref|YP_004274666.1| DNA polymerase III, subunits gamma and tau [Pedobacter saltans DSM 12145] gi|324973860|gb|ADY52844.1| DNA polymerase III, subunits gamma and tau [Pedobacter saltans DSM 12145] Length = 605 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP T E GQ+ + LK I++ + A+A LF GP G+GKTT A+++A+ + Sbjct: 12 RPVTFESVVGQLHITNTLKNAIKSNQL-AQAF---LFCGPRGVGKTTCARILAKTINCQN 67 Query: 83 RSTSG 87 + G Sbjct: 68 LTAQG 72 >gi|313906308|ref|ZP_07839651.1| ATP-dependent protease La [Eubacterium cellulosolvens 6] gi|313468864|gb|EFR64223.1| ATP-dependent protease La [Eubacterium cellulosolvens 6] Length = 776 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 100/242 (41%), Gaps = 45/242 (18%) Query: 6 GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVF--IEAAKARAEALDHVLFVGPP 63 GL +S+++ D+ R E+ G + + + + A + EA V VGPP Sbjct: 302 GLPWNKMSKDNKDLKKARAALEEDHYGLEKVKERILEYLAVRLATKKGEA-PIVCLVGPP 360 Query: 64 GLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNLEDRD- 107 G GKT++++ +A+ L F R + G V +A G +A L R+ Sbjct: 361 GTGKTSISKSIAKALNKTFVRISLGGVRDEAEIRGHRRTYIGAMPGRIAQGLHQAGVRNP 420 Query: 108 VLFIDEIHR--------LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 ++ +DEI + +S + E+L P D V V ++LS IA Sbjct: 421 LMLLDEIDKTSSDYKGDISSALLEVLDPEENSHFRDHYV-------EVPLDLSDVLFIAT 473 Query: 160 TTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKLTGLAVTDEAAC 209 + + PL DR + I +N Y E E + K + G K T L + DEA Sbjct: 474 ANDIQTIPKPLLDRMEL-IEINSYTENEKIHIAREHLMPKQLRSNGLKKTQLTIDDEALH 532 Query: 210 EI 211 EI Sbjct: 533 EI 534 >gi|311346924|gb|ADP90387.1| mitochondrial lon protease-like protein [Homo sapiens] Length = 959 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S E+ D++ + E+ G + + FI ++ R +L F GPPG+GKT++A Sbjct: 474 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 533 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G V A G + L + + ++ IDE+ Sbjct: 534 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 593 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ S + E+L P LD + V ++LS+ I + Sbjct: 594 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 646 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 647 EPLRDRMEM-INVSGYVAQEKLAIAER 672 >gi|320106217|ref|YP_004181807.1| ATP-dependent protease La [Terriglobus saanensis SP1PR4] gi|319924738|gb|ADV81813.1| ATP-dependent protease La [Terriglobus saanensis SP1PR4] Length = 820 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 51/204 (25%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + FVGPPG+GKT+L +A+ G F R + G V +A G + + Sbjct: 366 LCFVGPPGVGKTSLGMSIAKATGRKFVRFSLGGVRDEAEIRGHRRTYIGSLPGQIIQSMK 425 Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 ++ V+ +DEI ++ + + E+L P +D LD V+ Sbjct: 426 KAGTKNPVIMLDEIDKMASDFRGDPASAMLEVLDPEQNSTFQDHYLD-----------VE 474 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLA-- 202 +LS+ +A + + PL+DR I + EIE L + ++++ + TGL Sbjct: 475 YDLSQVLFVATANVLHTIPGPLRDRMEILQLHGYTEIEKLEIAKQYLLKKQREATGLTEE 534 Query: 203 ---VTDEAACEIAMRSRGTPRIAG 223 TD A EI RG R AG Sbjct: 535 NIEFTDGALKEII---RGYTREAG 555 >gi|301061949|ref|ZP_07202678.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX [delta proteobacterium NaphS2] gi|300443966|gb|EFK08002.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX [delta proteobacterium NaphS2] Length = 611 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 26/127 (20%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK----AGDLAALLTN-------- 102 ++VL +GP G+GKT + +++A++LGV F ++ GD+ L+ + Sbjct: 131 NNVLMIGPTGVGKTYMIKLIAQKLGVPFVKGDATKFSETGYVGGDVEDLIRDLVYEADES 190 Query: 103 --LEDRDVLFIDEIHRLSII------------VEEILYPAMEDFQLDLMVGEGPSARSVK 148 L + +++IDEI ++S V+ L ME+ +DL V P ++ Sbjct: 191 IELAENGIVYIDEIDKISSSRNLIGHDVSRTGVQRALLKPMEETDVDLKVPHDPISQIQA 250 Query: 149 INLSRFT 155 I R T Sbjct: 251 IEHYRRT 257 >gi|257871357|ref|ZP_05651010.1| peptidase M41 [Enterococcus gallinarum EG2] gi|257805521|gb|EEV34343.1| peptidase M41 [Enterococcus gallinarum EG2] Length = 697 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254 >gi|284037881|ref|YP_003387811.1| ATP-dependent metalloprotease FtsH [Spirosoma linguale DSM 74] gi|283817174|gb|ADB39012.1| ATP-dependent metalloprotease FtsH [Spirosoma linguale DSM 74] Length = 676 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109 L +GPPG GKT LA+ VA E GV F S SG V A + L +++ ++ Sbjct: 235 LLIGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEMFVGVGAARVRDLFKQAKEKAPCII 294 Query: 110 FIDEI 114 FIDEI Sbjct: 295 FIDEI 299 >gi|224372201|ref|YP_002606573.1| HpFtsH [Nautilia profundicola AmH] gi|223588557|gb|ACM92293.1| HpFtsH [Nautilia profundicola AmH] Length = 640 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108 VL VGPPG GKT LA+ VA E V F + SG + G AA + +L E + Sbjct: 210 VLLVGPPGTGKTLLAKAVAGEADVPFFAVSGSSFIEMFVGVGAARVRDLFNQAKKEAPSI 269 Query: 109 LFIDEI 114 +FIDEI Sbjct: 270 IFIDEI 275 >gi|222148226|ref|YP_002549183.1| AAA-family ATPase [Agrobacterium vitis S4] gi|221735214|gb|ACM36177.1| AAA-family ATPase [Agrobacterium vitis S4] Length = 308 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 7/69 (10%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED-----RDVL 109 +LF GPPG GK+ A+V+A+ELG+ F + + G+ A+ L L D +L Sbjct: 99 LLFCGPPGCGKSLTAEVLAKELGLPFMVAKLDALIGSMLGETASNLRRLFDAAERQTSIL 158 Query: 110 FIDEIHRLS 118 FIDE L+ Sbjct: 159 FIDEFDALA 167 >gi|198276945|ref|ZP_03209476.1| hypothetical protein BACPLE_03150 [Bacteroides plebeius DSM 17135] gi|198270470|gb|EDY94740.1| hypothetical protein BACPLE_03150 [Bacteroides plebeius DSM 17135] Length = 633 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 12/134 (8%) Query: 1 MMDREGLLSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV- 57 + +G+ +N E+ +S RP T + GQ + LK I K L H Sbjct: 10 LQKYQGIKQKNRHMENYIVSARKYRPSTFDTVVGQRALTTTLKNAIANHK-----LAHAY 64 Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDE 113 LF GP G+GKTT A++ A+ + ++ G + A N+ + D + Sbjct: 65 LFCGPRGVGKTTCARIFAKTINCLHPTSEGEACNECESCKAFNEQRSYNIHELDAASNNS 124 Query: 114 IHRLSIIVEEILYP 127 + + ++E++ P Sbjct: 125 VEDIRSLIEQVRIP 138 >gi|164688546|ref|ZP_02212574.1| hypothetical protein CLOBAR_02191 [Clostridium bartlettii DSM 16795] gi|164602959|gb|EDQ96424.1| hypothetical protein CLOBAR_02191 [Clostridium bartlettii DSM 16795] Length = 423 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 13/144 (9%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 LRP +E+ GQ K+ + + + +++ GPPG GKTTLA ++A G Sbjct: 8 LRPEAIEDMVGQSHIIGKGKIINRLIENKT--IPNMILYGPPGTGKTTLANIIANVTGKK 65 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMEDFQL 134 + + V ++ + N RD +L +DEI L+ ++ L +E+ + Sbjct: 66 YIKLNA-VNCGVKEIKDAIDN-SKRDLFSYNGIILMLDEIQALNKKQQQSLLEVIEEGSV 123 Query: 135 DLM--VGEGPSARSVKINLSRFTL 156 L+ + P K LSR T+ Sbjct: 124 TLIASTADNPYFVVYKAILSRSTI 147 >gi|156035707|ref|XP_001585965.1| hypothetical protein SS1G_13057 [Sclerotinia sclerotiorum 1980] gi|154698462|gb|EDN98200.1| hypothetical protein SS1G_13057 [Sclerotinia sclerotiorum 1980 UF-70] Length = 650 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108 +L GPPG KT AQ VA E+G NF + G +++K GD + N+ R + Sbjct: 425 LLLYGPPGCSKTLTAQAVATEMGFNFFAVKGAELLSKYVGDSERAVRNIFSRARAAAPSI 484 Query: 109 LFIDEIHRL 117 +F DEI + Sbjct: 485 IFFDEIESI 493 >gi|150024698|ref|YP_001295524.1| cell division protein FtsH [Flavobacterium psychrophilum JIP02/86] gi|149771239|emb|CAL42708.1| Cell division protein FtsH [Flavobacterium psychrophilum JIP02/86] Length = 643 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVL 109 L VGPPG GKT LA+ VA E V F S SG V A + L +D+ ++ Sbjct: 227 LLVGPPGTGKTLLAKAVAGEAQVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKDKSPSII 286 Query: 110 FIDEI 114 FIDEI Sbjct: 287 FIDEI 291 >gi|156102963|ref|XP_001617174.1| AAA family ATPase [Plasmodium vivax SaI-1] gi|148806048|gb|EDL47447.1| AAA family ATPase, putative [Plasmodium vivax] Length = 1070 Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ ++ E+ NF + GP I Sbjct: 610 ILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEI 643 >gi|114653053|ref|XP_001159421.1| PREDICTED: similar to Psmc6 protein isoform 1 [Pan troglodytes] Length = 370 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED ++S E G E L+ IE E V L Sbjct: 132 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 185 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 245 Query: 111 IDEI 114 +DEI Sbjct: 246 MDEI 249 >gi|158319483|ref|YP_001511990.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs] gi|158139682|gb|ABW17994.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs] Length = 651 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT L + VA E GV F S SG Sbjct: 200 ILMVGPPGTGKTYLTKAVAGEAGVPFFSISG 230 >gi|89892857|ref|YP_516344.1| hypothetical protein DSY0111 [Desulfitobacterium hafniense Y51] gi|89332305|dbj|BAE81900.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 557 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 132/353 (37%), Gaps = 89/353 (25%) Query: 23 RPRTLEEFTGQVEACSNL-KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP+ ++ GQ L +++ A A LF GP G GKTT A+V+A+ L Sbjct: 11 RPKNFKDMVGQDHVTKTLTNALMQSKVAHA-----YLFSGPRGTGKTTTAKVLAKALNCE 65 Query: 82 FRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIH------RLS--------IIV 121 R P A L A + ++ IDEI RLS I+ Sbjct: 66 HREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYII 125 Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181 +E+ E F L E P R V I ATT V + + R R Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPERVV--------FILATTEVHKIPLTILSRVQ---RFE 174 Query: 182 FYEI--EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239 F+ I E + + + + + G V EA IA +S G R A +L Sbjct: 175 FHRIPLEQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSIL------------- 221 Query: 240 TITREIADAALLRLAID-KMGFDQLDLRYLTMIARNFGG---------------GPVGIE 283 D LL +D K+G +Q+ + L M+ F G +G E Sbjct: 222 -------DQCLL---LDGKLGVEQV-YQVLGMVGEEFSAQLVDHLLTGDYAKALGCLG-E 269 Query: 284 TISAGLSEPRDAIEDLIEPYMIQ-------QGFIQRTPRGRLLMPIAWQHLGI 329 I+ G+ +PR I +L++ YM Q Q F Q P R + Q LG+ Sbjct: 270 GINQGM-DPRQIIRELLD-YMRQALLYASTQAFPQVAPHLREHLAYQCQMLGL 320 >gi|46579747|ref|YP_010555.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio vulgaris str. Hildenborough] gi|120602777|ref|YP_967177.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio vulgaris DP4] gi|61211537|sp|Q72CE7|CLPX_DESVH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214774|sp|A1VE84|CLPX_DESVV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|46449162|gb|AAS95814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio vulgaris str. Hildenborough] gi|120563006|gb|ABM28750.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio vulgaris DP4] gi|311233537|gb|ADP86391.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio vulgaris RCH1] Length = 417 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 25/122 (20%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEAL--------DHVLFVGPPGLGKTTL 70 ++ R E GQ +A L V + R AEAL ++L +GP G GKT L Sbjct: 67 IKARLDEYVIGQHQAKKILSVAVHNHYKRVFYAEALGGEVELEKSNILLIGPSGSGKTLL 126 Query: 71 AQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------VLFIDEIHR 116 A+ +AR L V F + +AG D+ +L L D D +++IDEI + Sbjct: 127 AKTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDIEAAAKGIIYIDEIDK 186 Query: 117 LS 118 +S Sbjct: 187 IS 188 >gi|33573324|emb|CAE37307.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella parapertussis] gi|33575673|emb|CAE32751.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella bronchiseptica RB50] Length = 453 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 +++ +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 134 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDV 193 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 194 EKAQRAIIYIDEIDKIS 210 >gi|83745914|ref|ZP_00942971.1| ClpX [Ralstonia solanacearum UW551] gi|300703973|ref|YP_003745575.1| ATPase and specificity subunit of clpx-clpp ATP-dependent serine protease [Ralstonia solanacearum CFBP2957] gi|83727604|gb|EAP74725.1| ClpX [Ralstonia solanacearum UW551] gi|299071636|emb|CBJ42960.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Ralstonia solanacearum CFBP2957] Length = 424 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 DKAQRGIVYIDEIDKIS 193 >gi|294495737|ref|YP_003542230.1| ATPase AAA [Methanohalophilus mahii DSM 5219] gi|292666736|gb|ADE36585.1| AAA family ATPase, CDC48 subfamily [Methanohalophilus mahii DSM 5219] Length = 761 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Query: 26 TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77 T E+ G E S LK +E + +A VL GPPG GKT LA+ +A E Sbjct: 484 TWEDVGGLEEVKSLLKEAVEWPLKYPDSFRRIGVDAPKGVLLYGPPGTGKTMLAKAIAHE 543 Query: 78 LGVNFRSTSG 87 VNF S G Sbjct: 544 SNVNFISAKG 553 Score = 38.9 bits (89), Expect = 0.97, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 16/107 (14%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79 E+ G A ++ IE E D VL GPPG GKT LA+ VA E Sbjct: 213 EDLGGIKPAIGKIREMIELPLKHPELFDRLGIDAPKGVLLQGPPGTGKTMLARAVANESD 272 Query: 80 VNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----VLFIDEIHRLS 118 F S +GP I G+ L L ED + ++F+DEI ++ Sbjct: 273 AYFISINGPEIMSKFYGESEQHLRQLFEDAEANAPSIIFLDEIDSIA 319 >gi|284034750|ref|YP_003384681.1| AAA ATPase central domain-containing protein [Kribbella flavida DSM 17836] gi|283814043|gb|ADB35882.1| AAA ATPase central domain protein [Kribbella flavida DSM 17836] Length = 572 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 12/74 (16%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGVNFRST------SGPVIAKAGDLAALLTNLEDR 106 H++F GPPG GKTT+A+VVAR LG+ T SG V G A + D Sbjct: 342 HLIFAGPPGTGKTTVARVVARLYCALGLLAADTVIETDRSGLVAEWIGQTAVKTNEVVDS 401 Query: 107 ---DVLFIDEIHRL 117 VLF+DE + L Sbjct: 402 ALDGVLFVDEAYAL 415 >gi|260426453|ref|ZP_05780432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citreicella sp. SE45] gi|260420945|gb|EEX14196.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citreicella sp. SE45] Length = 421 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189 >gi|237718289|ref|ZP_04548770.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|293368802|ref|ZP_06615406.1| ATPase family associated with various cellular activities (AAA) [Bacteroides ovatus SD CMC 3f] gi|298483646|ref|ZP_07001821.1| ATPase, AAA family [Bacteroides sp. D22] gi|299147836|ref|ZP_07040899.1| ATPase, AAA family [Bacteroides sp. 3_1_23] gi|229452473|gb|EEO58264.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292636107|gb|EFF54595.1| ATPase family associated with various cellular activities (AAA) [Bacteroides ovatus SD CMC 3f] gi|298270216|gb|EFI11802.1| ATPase, AAA family [Bacteroides sp. D22] gi|298514019|gb|EFI37905.1| ATPase, AAA family [Bacteroides sp. 3_1_23] Length = 324 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 24/168 (14%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106 HVL G PG+ KT LA++ AR + +F R P + + L + N++ Sbjct: 48 HVLIEGVPGVAKTLLARLTARLIDADFSRVQFTPDLMPSDVLGTTVFNMKTNGFDFHQGP 107 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 D++ +DEI+R + L+ ME+ Q+ + +G + R + +T++A V Sbjct: 108 IFADIVLVDEINRAPAKTQAALFEVMEERQISI---DGTTHRMGDL----YTILATQNPV 160 Query: 164 ---GLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 G P DRF + I +++ +E+ I++R L D+ Sbjct: 161 EQEGTYKLPEAQLDRFLMKITMDYPSLEEEVNILERHHTNAALVKLDD 208 >gi|225027803|ref|ZP_03716995.1| hypothetical protein EUBHAL_02062 [Eubacterium hallii DSM 3353] gi|224954853|gb|EEG36062.1| hypothetical protein EUBHAL_02062 [Eubacterium hallii DSM 3353] Length = 618 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 V+ VGPPG GKT LA+ V+ E GV F S SG Sbjct: 204 VILVGPPGTGKTLLAKAVSGEAGVPFFSISG 234 >gi|207343269|gb|EDZ70783.1| YLL034Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 693 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 426 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 457 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT++A +A EL V F S S P + +G+ + +L D + Sbjct: 98 VLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPCL 157 Query: 109 LFIDEIHRLS 118 +F DEI ++ Sbjct: 158 VFFDEIDAIT 167 >gi|193785434|dbj|BAG54587.1| unnamed protein product [Homo sapiens] Length = 923 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S E+ D++ + E+ G + + FI ++ R +L F GPPG+GKT++A Sbjct: 438 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 497 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G V A G + L + + ++ IDE+ Sbjct: 498 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 557 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ S + E+L P LD + V ++LS+ I + Sbjct: 558 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 610 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 611 EPLRDRMEM-INVSGYVAQEKLAIAER 636 >gi|119222397|gb|ABL62396.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222399|gb|ABL62397.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222401|gb|ABL62398.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222403|gb|ABL62399.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222405|gb|ABL62400.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222407|gb|ABL62401.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222421|gb|ABL62408.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222423|gb|ABL62409.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus NewJersey2] gi|119222425|gb|ABL62410.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222427|gb|ABL62411.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222429|gb|ABL62412.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222431|gb|ABL62413.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222433|gb|ABL62414.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222435|gb|ABL62415.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222437|gb|ABL62416.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222439|gb|ABL62417.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 197 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ ++ NL Sbjct: 2 NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 61 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 62 ERAQRGIVYIDEIDKIA 78 >gi|115465091|ref|NP_001056145.1| Os05g0533900 [Oryza sativa Japonica Group] gi|48843829|gb|AAT47088.1| putative ATP-dependent Clp protease subunit clpX [Oryza sativa Japonica Group] gi|113579696|dbj|BAF18059.1| Os05g0533900 [Oryza sativa Japonica Group] Length = 406 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 14/81 (17%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LA+ +AR V F I +AG D+ +++ NL Sbjct: 23 NILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVESIICNLLAAAKFNV 82 Query: 104 --EDRDVLFIDEIHRLSIIVE 122 +R +++IDE+ +L VE Sbjct: 83 EATERGIVYIDEVDKLIKKVE 103 >gi|30060003|gb|AAP13338.1| RFC-like DNA checkpoint protein Rad17 [Xenopus laevis] Length = 674 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 12/106 (11%) Query: 11 NVSQEDADISLLRPRTLEEFT------GQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64 + SQ D I RP E +VEA LK +E + + + +L GPPG Sbjct: 79 DYSQNDPWIDKYRPEIQAELAVHKKKIEEVEAW--LKTHVEK-RPQKQGGQILLLTGPPG 135 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF 110 GKT QV+ +E+G+ + P++ + L + DRD F Sbjct: 136 CGKTATIQVLTKEMGIQVQEWINPLMQ---EFKQDLPEVFDRDTRF 178 >gi|260905315|ref|ZP_05913637.1| DNA polymerase III, subunits gamma and tau [Brevibacterium linens BL2] Length = 1148 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 10/79 (12%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV 80 RP T +E GQ LK IE + ++H LF GP G GKTT A+++AR L Sbjct: 9 YRPETFDEVIGQEHVTDPLKAAIERGR-----INHAYLFSGPRGCGKTTSARILARCLNC 63 Query: 81 NFRSTSGPVIAKAGDLAAL 99 GP G+ + Sbjct: 64 ----AKGPTPVPCGECPSC 78 >gi|54309797|ref|YP_130817.1| ATP-dependent protease ATP-binding subunit ClpX [Photobacterium profundum SS9] gi|61211506|sp|Q6LNW1|CLPX_PHOPR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|46914235|emb|CAG21015.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX [Photobacterium profundum SS9] Length = 426 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|305665190|ref|YP_003861477.1| ATP-dependent protease ATP-binding subunit [Maribacter sp. HTCC2170] gi|88709942|gb|EAR02174.1| ATP-dependent protease ATP-binding subunit [Maribacter sp. HTCC2170] Length = 411 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103 +++ VG G GKT +A+ +AR L V V+ +AG D+ ++LT NL Sbjct: 110 NIIMVGQTGTGKTLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNL 169 Query: 104 E--DRDVLFIDEIHRLS 118 E +R ++FIDEI +++ Sbjct: 170 EKAERGIVFIDEIDKIA 186 >gi|326800323|ref|YP_004318142.1| Sigma 54 interacting domain protein [Sphingobacterium sp. 21] gi|326551087|gb|ADZ79472.1| Sigma 54 interacting domain protein [Sphingobacterium sp. 21] Length = 414 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 +++ VG G GKT LA+ +A+ L V F V+ +AG D+ ++LT L Sbjct: 111 NIIMVGETGTGKTLLAKTIAKVLNVPFCICDATVLTEAGYVGEDVESILTRLLQAADYDV 170 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 171 ASAERGIIYIDEIDKIA 187 >gi|307111636|gb|EFN59870.1| hypothetical protein CHLNCDRAFT_33715 [Chlorella variabilis] Length = 757 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 38/209 (18%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 SQE +++ + E+ G + + FI K R +L VGPPG+GKT++ Sbjct: 201 SQEKLEVTAAKQVLDEDHYGLEDVKDRILEFIAVGKLRGSTQGKILCLVGPPGVGKTSIG 260 Query: 72 QVVARELGVNF------------------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113 + +AR L + R+ G + K + L T + IDE Sbjct: 261 RSIARALNRKYYRFSVGGLSDVAEIKGHRRTYVGAMPGKM--VQCLKTTGTSNPFVLIDE 318 Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 I +L + + E+L P LD + V ++LS+ + + Sbjct: 319 IDKLGRGYQGDPASALLELLDPEQNSGFLDHYL-------DVPVDLSKVLFMCTANVLDT 371 Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + PL DR I IRL+ Y I D K + R Sbjct: 372 IPGPLLDRMEI-IRLSGY-IFDEKVAIAR 398 >gi|262038579|ref|ZP_06011948.1| DNA polymerase III, subunit gamma and tau [Leptotrichia goodfellowii F0264] gi|261747448|gb|EEY34918.1| DNA polymerase III, subunit gamma and tau [Leptotrichia goodfellowii F0264] Length = 501 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 97/233 (41%), Gaps = 44/233 (18%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81 RP+ +E GQ +K R + L H LF GP G+GKTT+A+++A+ GVN Sbjct: 15 RPQNFDEIAGQEFVTRAIK-----NSLREDKLSHAYLFTGPRGVGKTTIARLIAK--GVN 67 Query: 82 FRS---TSGP--VIAKAGDLAALLT----NLEDRDVLFIDEIHRLS-------------- 118 + T P V ++A ++ ++ IDEI L Sbjct: 68 CLNNGITDNPCGVCDNCREIAQGISMDMIEIDAASNRGIDEIRELKEKINYQPVKGRRKI 127 Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 I++E+ E F L E P A + I ATT + + + + R Sbjct: 128 YIIDEVHMLTKEAFNALLKTLEEPPAHVI--------FILATTEIDKIPDTVISRCQ--- 176 Query: 179 RLNFYEIE--DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 R +F I+ D+ +++ A+ + + DE+ I +S G+ R + + +V Sbjct: 177 RYDFLPIDEKDITKLLKEVAEKENITIDDESLDLIYRKSEGSARDSFSIFEQV 229 >gi|256828016|ref|YP_003156744.1| ATP-dependent protease La [Desulfomicrobium baculatum DSM 4028] gi|256577192|gb|ACU88328.1| ATP-dependent protease La [Desulfomicrobium baculatum DSM 4028] Length = 815 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 48/195 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+LA+ +AR G F R + G V +A G + L Sbjct: 362 LCLVGPPGVGKTSLAKSIARATGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 421 Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148 + + +F +DE+ ++S+ + E+L P A D LD+ Sbjct: 422 RVSTNNPVFCLDEVDKMSMDFRGDPSAALLEVLDPEQNSAFNDHYLDM-----------D 470 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLT 199 +LS+ I + + PLQDR I + E E K + Q G K Sbjct: 471 YDLSQVFFITTANSLQTIPLPLQDRMEIITIPGYLETEKERIASDFLLPKQLEQHGLKPE 530 Query: 200 GLAVTDEAACEIAMR 214 L+++ A EI R Sbjct: 531 NLSMSKGAILEIIRR 545 >gi|225562412|gb|EEH10691.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR] Length = 394 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ Q + L+ ++A+ L H+LF GPPG GKT+ +A+ L Sbjct: 42 RPKTLDDVASQEHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 92 >gi|160943001|ref|ZP_02090239.1| hypothetical protein FAEPRAM212_00478 [Faecalibacterium prausnitzii M21/2] gi|158445695|gb|EDP22698.1| hypothetical protein FAEPRAM212_00478 [Faecalibacterium prausnitzii M21/2] Length = 616 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 203 ILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 262 Query: 109 LFIDEI 114 +FIDEI Sbjct: 263 VFIDEI 268 >gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] Length = 402 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ L++ Q A LK I L H+LF GPPG GKT+ +A++L Sbjct: 42 RPKNLDDVASQDHAVKVLKKQISTGN-----LPHMLFYGPPGTGKTSTILALAKQL 92 >gi|20092857|ref|NP_618932.1| hypothetical protein MA4064 [Methanosarcina acetivorans C2A] gi|19918161|gb|AAM07412.1| hypothetical protein MA_4064 [Methanosarcina acetivorans C2A] Length = 428 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108 +LFVGPPG GKT++A+ ++ +L + F +I AK D LL + + Sbjct: 213 LLFVGPPGTGKTSVARALSEQLSIPFVEVKLSMITDQYLGETAKNIDRVFLLAKKLNPCI 272 Query: 109 LFIDEI 114 LFIDE+ Sbjct: 273 LFIDEL 278 >gi|57642153|ref|YP_184631.1| replication factor C small subunit [Thermococcus kodakarensis KOD1] gi|62287362|sp|Q5JHP2|RFCS_PYRKO RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit; Contains: RecName: Full=Pko RFC intein gi|57160477|dbj|BAD86407.1| replication factor C, small subunit [Thermococcus kodakarensis KOD1] Length = 866 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQ 72 E + RP+ LE+ GQ LK +++ ++ H+LF GPPG+GK T A+ Sbjct: 12 EKPWVEKYRPQRLEDIVGQDHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKCLTGDAK 66 Query: 73 VVA 75 V+A Sbjct: 67 VIA 69 >gi|320041387|gb|EFW23320.1| ribosome biogenesis ATPase [Coccidioides posadasii str. Silveira] Length = 762 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E NF S GP Sbjct: 537 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 568 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT +A A ELGV F + S P I +G+ L D + Sbjct: 232 VLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKAAPCL 291 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 292 VFIDEIDAIT 301 >gi|321262352|ref|XP_003195895.1| hypothetical protein CGB_H5110W [Cryptococcus gattii WM276] gi|317462369|gb|ADV24108.1| Hypothetical protein CGB_H5110W [Cryptococcus gattii WM276] Length = 1202 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG GKT LA+ VA +NF S GP Sbjct: 899 ILLYGPPGTGKTLLAKAVATSFSLNFFSVKGP 930 >gi|311107152|ref|YP_003980005.1| ATP-dependent Clp protease ATP-binding subunit ClpX 1 [Achromobacter xylosoxidans A8] gi|310761841|gb|ADP17290.1| ATP-dependent Clp protease, ATP-binding subunit ClpX 1 [Achromobacter xylosoxidans A8] Length = 432 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 +++ +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEV 174 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRAIIYIDEIDKIS 191 >gi|302808211|ref|XP_002985800.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii] gi|300146307|gb|EFJ12977.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii] Length = 345 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ +++ Q E L +E L H+LF GPPG GKT+ A V REL Sbjct: 12 RPKQVKDVAHQDEVVRTLANALETGN-----LPHLLFYGPPGTGKTSTALAVTREL 62 >gi|299066732|emb|CBJ37926.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Ralstonia solanacearum CMR15] Length = 424 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 177 DKAQRGIVYIDEIDKIS 193 >gi|294673359|ref|YP_003573975.1| AAA family ATPase [Prevotella ruminicola 23] gi|294473223|gb|ADE82612.1| ATPase, AAA family [Prevotella ruminicola 23] Length = 1063 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 16/104 (15%) Query: 31 TGQVEACSNLKVFIEAAKARAEAL----DHVLFVGPPGLGKTTLAQVVA---RELGVNFR 83 +G + +NL F+ AR E H +F G PG GKTT+A+++A + LGV R Sbjct: 538 SGVKKEIANLAAFLNLQIARGETNTFQGKHYVFTGNPGTGKTTVARIMADIFKTLGVVAR 597 Query: 84 ST------SGPVIAKAGDLAALLTNLEDR---DVLFIDEIHRLS 118 S V +G A L D+ VLFIDE + L Sbjct: 598 GQLVEADRSKLVAGFSGQTAIKTNQLVDQAMGGVLFIDEAYTLK 641 >gi|261880081|ref|ZP_06006508.1| ATP-dependent metalloprotease FtsH [Prevotella bergensis DSM 17361] gi|270333236|gb|EFA44022.1| ATP-dependent metalloprotease FtsH [Prevotella bergensis DSM 17361] Length = 720 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 19/30 (63%), Positives = 21/30 (70%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L +GPPG GKT LA+ VA E GV F S SG Sbjct: 236 LLIGPPGTGKTLLAKAVAGEAGVPFFSMSG 265 >gi|251782781|ref|YP_002997084.1| DNA polymerase III subunits gamma and tau [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391411|dbj|BAH81870.1| DNA polymerase III subunits gamma and tau [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 559 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 R +T +E GQ + LK +E+ K + H LF GP G GKT+ A++ A+ + Sbjct: 10 RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 + P D+ +TN DV+ ID Sbjct: 65 NQVNGEPC--NQCDICRDITNGSLEDVIEID 93 >gi|240281117|gb|EER44620.1| DNA replication factor C subunit Rfc2 [Ajellomyces capsulatus H143] gi|325092385|gb|EGC45695.1| activator 1 41 kDa subunit [Ajellomyces capsulatus H88] Length = 394 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ Q + L+ ++A+ L H+LF GPPG GKT+ +A+ L Sbjct: 42 RPKTLDDVASQEHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 92 >gi|294936741|ref|XP_002781856.1| cell division protein FtsH, putative [Perkinsus marinus ATCC 50983] gi|239892914|gb|EER13651.1| cell division protein FtsH, putative [Perkinsus marinus ATCC 50983] Length = 608 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/30 (66%), Positives = 21/30 (70%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ VA E GV F S SG Sbjct: 109 LLVGPPGTGKTLLAKAVAGESGVPFFSMSG 138 >gi|239907452|ref|YP_002954193.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio magneticus RS-1] gi|239797318|dbj|BAH76307.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio magneticus RS-1] Length = 417 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 31/146 (21%) Query: 4 REGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIE--------AAKAR 50 E + +V++E LL P R L+E+ GQ +A L V + A A Sbjct: 44 NEIIAQESVTEETEGGKLLPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGSAG 103 Query: 51 AEALD----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAA 98 A+ ++ ++L +GP G GKT LAQ +AR L V F + +AG L Sbjct: 104 ADDVEIDKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVQ 163 Query: 99 LLTNLE------DRDVLFIDEIHRLS 118 LL N + + +++IDEI +++ Sbjct: 164 LLQNADYDIESASKGIIYIDEIDKIA 189 >gi|226304114|ref|YP_002764072.1| ATP-dependent protease FtsH [Rhodococcus erythropolis PR4] gi|310946759|sp|C0ZPK5|FTSH_RHOE4 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|226183229|dbj|BAH31333.1| ATP-dependent protease FtsH [Rhodococcus erythropolis PR4] Length = 854 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34 VEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VE +K F++ AR +AL VL GPPG GKT LA+ VA E GV F + SG Sbjct: 176 VEELYEIKDFLQN-PARYQALGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISG 233 >gi|225423767|ref|XP_002277238.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297737931|emb|CBI27132.3| unnamed protein product [Vitis vinifera] Length = 1032 Score = 40.0 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108 +L GPPG GKT LA+ +A E G NF S +G + GD L L + Sbjct: 779 ILLFGPPGTGKTLLAKALATEAGANFISVTGSNLTSKWFGDAEKLTKALFSFAGKLAPVI 838 Query: 109 LFIDEIHRL 117 +F+DE+ L Sbjct: 839 IFVDEVDSL 847 >gi|212541869|ref|XP_002151089.1| DNA replication factor C subunit Rfc3, putative [Penicillium marneffei ATCC 18224] gi|210065996|gb|EEA20089.1| DNA replication factor C subunit Rfc3, putative [Penicillium marneffei ATCC 18224] Length = 397 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP +L+E G + + + FI++ + L H+L GPPG GKTT +AR + Sbjct: 51 RPSSLDEVQGHQDILATINRFIDSHR-----LPHLLLYGPPGTGKTTTILALARRI 101 >gi|163793183|ref|ZP_02187159.1| ATP-dependent protease Clp [alpha proteobacterium BAL199] gi|159181829|gb|EDP66341.1| ATP-dependent protease Clp [alpha proteobacterium BAL199] Length = 424 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 113 AKSNILLIGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192 >gi|119589558|gb|EAW69152.1| protease, serine, 15, isoform CRA_b [Homo sapiens] Length = 950 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S E+ D++ + E+ G + + FI ++ R +L F GPPG+GKT++A Sbjct: 465 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 524 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G V A G + L + + ++ IDE+ Sbjct: 525 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 584 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ S + E+L P LD + V ++LS+ I + Sbjct: 585 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 637 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 638 EPLRDRMEM-INVSGYVAQEKLAIAER 663 >gi|187478000|ref|YP_786024.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella avium 197N] gi|123515222|sp|Q2L255|CLPX_BORA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|115422586|emb|CAJ49111.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella avium 197N] Length = 432 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 +++ +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDV 174 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRAIIYIDEIDKIS 191 >gi|103488442|ref|YP_618003.1| ATPase [Sphingopyxis alaskensis RB2256] gi|98978519|gb|ABF54670.1| ATPase associated with various cellular activities, AAA_3 [Sphingopyxis alaskensis RB2256] Length = 298 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 25/168 (14%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106 HVL GPPG KT LAQ AR G++F R P + L + L N + Sbjct: 20 HVLLEGPPGTAKTLLAQAFARASGLDFGRIQFTPDLMPGDILGSNLFNFQTSSFTLTKGP 79 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 ++L DEI+R + L AM++ ++ + GE P S RFT++A + Sbjct: 80 IFAELLLADEINRTPPKTQAALLEAMQERRVTIN-GE-PHVMS-----PRFTVLATQNPI 132 Query: 164 ---GLLTNPLQ--DRFGIPIRLNFYEIEDLKTIV-QRGAKLTGLAVTD 205 G+ P DRF + +++ ++ + IV G + AV D Sbjct: 133 EQQGVYPLPEAQLDRFLFKLVVDYPAADEERRIVADHGGRFNSPAVGD 180 >gi|78777221|ref|YP_393536.1| peptidase M41 [Sulfurimonas denitrificans DSM 1251] gi|78497761|gb|ABB44301.1| Peptidase M41 [Sulfurimonas denitrificans DSM 1251] Length = 547 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 18/31 (58%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA GV F SG Sbjct: 185 VLLVGPPGVGKTMIAKAVANAAGVPFYYQSG 215 >gi|62896685|dbj|BAD96283.1| TATA binding protein interacting protein 49 kDa variant [Homo sapiens] Length = 456 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 D S L + GQ A V +E K++ A VL GPPG GKT LA +A+E Sbjct: 27 DESGLAKQAASGLVGQENAREACGVTVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 Query: 78 LG 79 LG Sbjct: 87 LG 88 >gi|55741540|ref|NP_001006957.1| katanin p60 ATPase-containing subunit A-like 1 [Rattus norvegicus] gi|60389845|sp|Q5XIK7|KATL1_RAT RecName: Full=Katanin p60 ATPase-containing subunit A-like 1; Short=Katanin p60 subunit A-like 1; AltName: Full=p60 katanin-like 1 gi|53733477|gb|AAH83673.1| Katanin p60 subunit A-like 1 [Rattus norvegicus] gi|149034821|gb|EDL89541.1| katanin p60 subunit A-like 1, isoform CRA_a [Rattus norvegicus] Length = 488 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL VGPPG GKT LA+ VA E G F + S + Sbjct: 242 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 275 >gi|24379392|ref|NP_721347.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus mutans UA159] gi|290580606|ref|YP_003484998.1| ATP-dependent protease Clp ATPase subunit [Streptococcus mutans NN2025] gi|46576567|sp|Q8DUI0|CLPX_STRMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|24377322|gb|AAN58653.1|AE014935_5 ATP-dependent protease Clp, ATPase subunit ClpX [Streptococcus mutans UA159] gi|254997505|dbj|BAH88106.1| ATP-dependent protease Clp ATPase subunit [Streptococcus mutans NN2025] Length = 410 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYNV 172 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 173 ERAERGIIYVDEIDKIA 189 >gi|86137327|ref|ZP_01055904.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193] gi|85825662|gb|EAQ45860.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193] Length = 422 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 111 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 170 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 171 YNVERAQRGIVYIDEVDKIT 190 >gi|289422494|ref|ZP_06424337.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus anaerobius 653-L] gi|289157066|gb|EFD05688.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus anaerobius 653-L] Length = 625 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +L VGPPG GKT L++ VA E GV F S SG Sbjct: 199 ILMVGPPGTGKTYLSRAVAGEAGVPFFSISG 229 >gi|255527671|ref|ZP_05394530.1| Sigma 54 interacting domain protein [Clostridium carboxidivorans P7] gi|296186812|ref|ZP_06855213.1| ATP-dependent protease, Lon family [Clostridium carboxidivorans P7] gi|255508651|gb|EET85032.1| Sigma 54 interacting domain protein [Clostridium carboxidivorans P7] gi|296048526|gb|EFG87959.1| ATP-dependent protease, Lon family [Clostridium carboxidivorans P7] Length = 638 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 11/71 (15%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67 LS+N+ S+LRP E GQ A ++ +K + H++ GPPG+GK Sbjct: 157 LSKNIQ------SILRPGCFSEIVGQERAIKSI-----LSKLASPYPQHIILYGPPGVGK 205 Query: 68 TTLAQVVAREL 78 TT A++ E+ Sbjct: 206 TTAARLALEEV 216 >gi|240115851|ref|ZP_04729913.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae PID18] gi|254493894|ref|ZP_05107065.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae 1291] gi|260440333|ref|ZP_05794149.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae DGI2] gi|268601527|ref|ZP_06135694.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae PID18] gi|291043626|ref|ZP_06569342.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae DGI2] gi|226512934|gb|EEH62279.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae 1291] gi|268585658|gb|EEZ50334.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae PID18] gi|291012089|gb|EFE04078.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae DGI2] Length = 414 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 104 --EDRDVLFIDEIHRLS 118 +++IDEI ++S Sbjct: 174 EKAQHGIVYIDEIDKIS 190 >gi|255659637|ref|ZP_05405046.1| cell division protein FtsH [Mitsuokella multacida DSM 20544] gi|260848199|gb|EEX68206.1| cell division protein FtsH [Mitsuokella multacida DSM 20544] Length = 684 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E V F S +G + A + L +++ + Sbjct: 200 VLLVGPPGTGKTMLAKAVAGEANVPFFSIAGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 259 Query: 109 LFIDEI 114 +FIDEI Sbjct: 260 VFIDEI 265 >gi|163857102|ref|YP_001631400.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella petrii DSM 12804] gi|229889853|sp|A9IR50|CLPX_BORPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|163260830|emb|CAP43132.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella petrii] Length = 432 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 +++ +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEV 174 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRAIIYIDEIDKIS 191 >gi|156054484|ref|XP_001593168.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980] gi|154703870|gb|EDO03609.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980 UF-70] Length = 774 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL VGPPG GKT LA+ VA E GV F SG V A + L T + + + Sbjct: 333 VLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEIYVGVGAKRVRELFTAAKSKSPAI 392 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 393 IFIDEL 398 >gi|76802726|ref|YP_330821.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas pharaonis DSM 2160] gi|76558591|emb|CAI50183.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas pharaonis DSM 2160] Length = 702 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108 +L GPPG GKT LA+ +A E VNF S +GP + G+ + + DR + Sbjct: 485 ILLYGPPGTGKTLLARALAGESDVNFVSVAGPELLDKYVGESEKAVREVFDRARQAAPAI 544 Query: 109 LFIDEIHRLS 118 +F DEI L+ Sbjct: 545 VFFDEIDALA 554 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT +A+ VA E+ +F GP I G+ L +R V Sbjct: 226 VLLYGPPGTGKTLIAKAVANEVDAHFEVIDGPEIVSKYKGESEERLRETFERAVDNQPAV 285 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 286 VFIDEIDSIA 295 >gi|12852148|dbj|BAB29293.1| unnamed protein product [Mus musculus] Length = 389 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED ++S E G E +L+ IE E V L Sbjct: 118 LVYNMSHEDPGNVSY------SEIGGLSEQIRDLREVIELPLTNPELFQRVGIIPPKGCL 171 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYVRDHQPCIIF 231 Query: 111 IDEI 114 +DEI Sbjct: 232 MDEI 235 >gi|71003982|ref|XP_756657.1| hypothetical protein UM00510.1 [Ustilago maydis 521] gi|46095729|gb|EAK80962.1| hypothetical protein UM00510.1 [Ustilago maydis 521] Length = 398 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108 VL GPPG GKT LA+ +A+E G F + + ++ L A L +L + + Sbjct: 124 VLLYGPPGTGKTMLAKALAKESGATFINMHVSTLTNKWFGESNKLVAALFSLARKLQPSI 183 Query: 109 LFIDEI 114 +FIDEI Sbjct: 184 IFIDEI 189 >gi|323498277|ref|ZP_08103279.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio sinaloensis DSM 21326] gi|323316705|gb|EGA69714.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio sinaloensis DSM 21326] Length = 427 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|270292403|ref|ZP_06198614.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. M143] gi|270278382|gb|EFA24228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. M143] Length = 410 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|261328900|emb|CBH11878.1| AAA ATPase, putative [Trypanosoma brucei gambiense DAL972] Length = 795 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL GPPG KT LA+ +A E +NF S GP V +K GD + ++ R V Sbjct: 565 VLLYGPPGCSKTMLAKALANESKMNFVSVKGPEVFSKWVGDSEKAVRDIFARARAAAPCV 624 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 625 VFIDEL 630 >gi|257387362|ref|YP_003177135.1| proteasome-activating nucleotidase [Halomicrobium mukohataei DSM 12286] gi|257169669|gb|ACV47428.1| 26S proteasome subunit P45 family [Halomicrobium mukohataei DSM 12286] Length = 406 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL----EDRD--V 108 VL GPPG GKT LA+ VA E F +G + + G+ A L+ +L DR+ V Sbjct: 188 VLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLFELAADREPAV 247 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 248 IFIDEIDAIA 257 >gi|256028616|ref|ZP_05442450.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium sp. D11] gi|289766534|ref|ZP_06525912.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium sp. D11] gi|289718089|gb|EFD82101.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium sp. D11] Length = 424 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 31/145 (21%) Query: 4 REGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKAR--AEALD- 55 R+G S N + + I LL+P L+E+ GQ EA L V + R D Sbjct: 57 RDGKSSNNKNYK-GKIELLKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDD 115 Query: 56 --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL 103 +VL VGP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 116 DGVELQKSNVLLVGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRL 175 Query: 104 ----------EDRDVLFIDEIHRLS 118 +R +++IDE +++ Sbjct: 176 IQACNYDIPNAERGIIYIDEFDKIA 200 >gi|254507763|ref|ZP_05119894.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus 16] gi|219549288|gb|EED26282.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus 16] Length = 427 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|195028710|ref|XP_001987219.1| GH20092 [Drosophila grimshawi] gi|193903219|gb|EDW02086.1| GH20092 [Drosophila grimshawi] Length = 754 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 T ++ G EA LK +E K+ + + VL VGPPG GKT LA+ VA E Sbjct: 317 TFDDVKGCDEAKQELKEVVEFLKSPDKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 376 Query: 79 GVNFRSTSGP 88 V F +GP Sbjct: 377 NVPFFHAAGP 386 >gi|189095436|ref|YP_001936449.1| cell division protein [Heterosigma akashiwo] gi|310943132|sp|B2XTF7|FTSH_HETA2 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|157694779|gb|ABV66055.1| ATP-dependent Zn protease; cell division protein FtsH homolog [Heterosigma akashiwo] gi|157778010|gb|ABV70196.1| ATP-dependent Zn protease [Heterosigma akashiwo] Length = 663 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL VGPPG GKT LA+ +A E V F + SG + G AA + NL ++ + Sbjct: 240 VLLVGPPGTGKTLLAKAIAGEAKVPFINISGSEFVEMFVGVGAARVRNLFEKAKQDTPCI 299 Query: 109 LFIDEI 114 +FIDEI Sbjct: 300 IFIDEI 305 >gi|168704277|ref|ZP_02736554.1| ATP-dependent protease ATP-binding subunit [Gemmata obscuriglobus UQM 2246] Length = 433 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 31/141 (21%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++LFVGP G GKT LA+ +A+ L V F + +AG + + NL Sbjct: 130 NILFVGPTGSGKTLLARTLAKILDVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDI 189 Query: 104 --EDRDVLFIDEIHRLS------IIVEEILYPAMEDFQLDLMVG-----------EGPSA 144 R +++IDEI +++ I ++ ++ L ++ G + P Sbjct: 190 EAAQRGIIYIDEIDKIAKTSQNVSITRDVSGEGVQQALLKMLEGTVSNVPPQGGRKHPEQ 249 Query: 145 RSVKINLSRFTLIAATTRVGL 165 + ++++ S I T VGL Sbjct: 250 QYIQVDTSNILFICGGTFVGL 270 >gi|114767021|ref|ZP_01445929.1| ATP-dependent protease ATP-binding subunit [Pelagibaca bermudensis HTCC2601] gi|114540805|gb|EAU43869.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. HTCC2601] Length = 421 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSE 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189 >gi|158321197|ref|YP_001513704.1| sporulation protease LonB [Alkaliphilus oremlandii OhILAs] gi|158141396|gb|ABW19708.1| Sporulation protease LonB [Alkaliphilus oremlandii OhILAs] Length = 571 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 +RP T+E+ GQ + L+ + + HV+ GPPG+GKT A+V+ E N Sbjct: 61 VRPSTIEDIIGQEDGIKALRAALCTNNPQ-----HVIIYGPPGVGKTAAARVILEEAKRN 115 Query: 82 FRS 84 +S Sbjct: 116 HQS 118 >gi|86742989|ref|YP_483389.1| Mername-AA223 peptidase [Frankia sp. CcI3] gi|86569851|gb|ABD13660.1| membrane protease FtsH catalytic subunit [Frankia sp. CcI3] Length = 753 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +E +K F+E A+ VL GPPG GKT LA+ VA E GV F S SG Sbjct: 167 IEELEEIKEFLENPGKFQAIGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 224 >gi|72390405|ref|XP_845497.1| valosin-containing protein homolog [Trypanosoma brucei TREU927] gi|62360347|gb|AAX80763.1| valosin-containing protein homolog, putative [Trypanosoma brucei] gi|70802032|gb|AAZ11938.1| valosin-containing protein homolog, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 795 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL GPPG KT LA+ +A E +NF S GP V +K GD + ++ R V Sbjct: 565 VLLYGPPGCSKTMLAKALANESKMNFVSVKGPEVFSKWVGDSEKAVRDIFARARAAAPCV 624 Query: 109 LFIDEI 114 +FIDE+ Sbjct: 625 VFIDEL 630 >gi|332685804|ref|YP_004455578.1| cell division protein FtsH [Melissococcus plutonius ATCC 35311] gi|332369813|dbj|BAK20769.1| cell division protein FtsH [Melissococcus plutonius ATCC 35311] Length = 711 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 222 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 252 >gi|327402293|ref|YP_004343131.1| ATP-dependent protease La [Fluviicola taffensis DSM 16823] gi|327317801|gb|AEA42293.1| ATP-dependent protease La [Fluviicola taffensis DSM 16823] Length = 808 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 32/162 (19%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + F GPPG+GKT+L + VA LG + R + G V +A G + + R Sbjct: 385 LCFYGPPGVGKTSLGKSVAEALGRKYVRMSLGGVHDEAEIRGHRKTYIGAMPGRVIQHLK 444 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V +DEI +L S + E+L P D V + +LS Sbjct: 445 KAGSANPVFVLDEIDKLGRSNHGDPSSALLEVLDPEQNSSFYDNYV-------ETEFDLS 497 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + IA + + PL DR I I +N Y IE+ I ++ Sbjct: 498 KVMFIATANNLSSVQGPLLDRMEI-IEVNGYTIEEKIEIAKK 538 >gi|323465809|gb|ADX69496.1| M41 family endopeptidase FtsH [Lactobacillus helveticus H10] Length = 726 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E V F S SG V A + L N + + Sbjct: 234 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 293 Query: 109 LFIDEI 114 +FIDEI Sbjct: 294 IFIDEI 299 >gi|323127623|gb|ADX24920.1| DNA polymerase III subunits gamma and tau [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 559 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 R +T +E GQ + LK +E+ K + H LF GP G GKT+ A++ A+ + Sbjct: 10 RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 + P D+ +TN DV+ ID Sbjct: 65 NQVNGEPC--NQCDICRDITNGSLEDVIEID 93 >gi|319956172|ref|YP_004167435.1| ATP-dependent proteinase [Nitratifractor salsuginis DSM 16511] gi|319418576|gb|ADV45686.1| ATP-dependent proteinase [Nitratifractor salsuginis DSM 16511] Length = 805 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 38/163 (23%) Query: 59 FVGPPGLGKTTLAQVVAR------------------ELGVNFRSTSGPVIAKAGDLAALL 100 F GPPG+GKT+LA +A+ EL + R+ G A G + L Sbjct: 364 FAGPPGVGKTSLANSIAKALDRPLVRIALGGLEDVNELRGHRRTYVG---AMPGRIVQGL 420 Query: 101 TNLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 + D V+ +DEI ++ + + EIL P D + + I+L Sbjct: 421 IEAKTMDPVMVLDEIDKVGRTHRGDPTSALLEILDPEQNTHYRDYYL-------NFSIDL 473 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 S+ IA +G + PL+DR I I +N Y E+ I +R Sbjct: 474 SKVVFIATANELGYIPAPLRDRMEI-IIINSYTPEEKFEIARR 515 >gi|312882506|ref|ZP_07742247.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio caribbenthicus ATCC BAA-2122] gi|309369906|gb|EFP97417.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio caribbenthicus ATCC BAA-2122] Length = 427 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|299471164|emb|CBN79021.1| ATP-dependent protease La [Ectocarpus siliculosus] Length = 1170 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 93/233 (39%), Gaps = 42/233 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+L + +A L F+ S G V +A G + L Sbjct: 416 LCLVGPPGVGKTSLGRSIAAALNRKFQRLSLGGVHDEAEIRGHRRTYIGAMPGGIVRCLR 475 Query: 102 NLEDRD-VLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 R+ V+ +DE+ ++ S + E+L P D D V +V +L Sbjct: 476 RAGTRNPVMLLDEVDKIGSNVRGGDPSAALLEVLDPEQNDSFTDHYV-------NVPFDL 528 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 S +A +V + PL DR + I + Y +E+ K + + + E Sbjct: 529 SSVLFVATANKVDAIPEPLLDRLEV-IHIPGYTLEE-KVKIAEAYLIPKQMKKNGVGAEH 586 Query: 212 AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264 + R T +LR + A + + RE+ AA+ R K+G Q D Sbjct: 587 MLLPRST------VLRVASSYTREAGVRQLEREL--AAVCRHVALKVGVWQQD 631 >gi|296134052|ref|YP_003641299.1| Sigma 54 interacting domain protein [Thermincola sp. JR] gi|296032630|gb|ADG83398.1| Sigma 54 interacting domain protein [Thermincola potens JR] Length = 560 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ E LK + + HV+ GPPG+GKT A++V E N Sbjct: 68 RPSTFNEIVGQQEGIKALKAALCGPNPQ-----HVIIYGPPGVGKTAAARLVMEEAKKN 121 >gi|295102377|emb|CBK99922.1| ATP-dependent metalloprotease FtsH [Faecalibacterium prausnitzii L2-6] Length = 611 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 202 ILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 261 Query: 109 LFIDEI 114 +FIDEI Sbjct: 262 VFIDEI 267 >gi|295084718|emb|CBK66241.1| MoxR-like ATPases [Bacteroides xylanisolvens XB1A] Length = 324 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 24/168 (14%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106 HVL G PG+ KT LA++ AR + +F R P + + L + N++ Sbjct: 48 HVLIEGVPGVAKTLLARLTARLIDADFSRVQFTPDLMPSDVLGTTVFNMKTNGFDFHQGP 107 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 D++ +DEI+R + L+ ME+ Q+ + +G + R + +T++A V Sbjct: 108 IFADIVLVDEINRAPAKTQAALFEVMEERQISI---DGTTHRMGDL----YTILATQNPV 160 Query: 164 ---GLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 G P DRF + I +++ +E+ I++R L D+ Sbjct: 161 EQEGTYKLPEAQLDRFLMKITMDYPSLEEEVNILERHHTNAALVKLDD 208 >gi|294816606|ref|ZP_06775248.1| Putative sporulation protein K-like protein [Streptomyces clavuligerus ATCC 27064] gi|294321421|gb|EFG03556.1| Putative sporulation protein K-like protein [Streptomyces clavuligerus ATCC 27064] Length = 1135 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 72/191 (37%), Gaps = 39/191 (20%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELG------------VNFRSTSGPVIAKAGDLAALLTN 102 +H++F GPPG GKTT+A++ L V+ G I L + Sbjct: 912 NHLVFAGPPGTGKTTVARLYGELLSSLEVLPRGQLVEVSRADLVGRYIGHTAQLTKEVFQ 971 Query: 103 LEDRDVLFIDEIHRL---------SIIVEE---ILYPAMEDFQLDLMVGEGPSARSVKIN 150 VLFIDE + L S +E L MED + +++V A Sbjct: 972 RALGGVLFIDEAYTLTPESGGPGSSDFGQEAVDTLLKLMEDHRDEVVV----IAAGYTRE 1027 Query: 151 LSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209 + RF L +NP L RF + Y ++L TIVQR A G E A Sbjct: 1028 MDRF----------LGSNPGLASRFTRTVEFPNYSSDELVTIVQRHAADNGYDCAPETAA 1077 Query: 210 EIAMRSRGTPR 220 + PR Sbjct: 1078 GLHTHFETIPR 1088 >gi|289743537|gb|ADD20516.1| replication factor C subunit RFC2 [Glossina morsitans morsitans] Length = 333 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-E 77 I RP +E G E L VF A +++ GPPG+GKTT Q +AR Sbjct: 22 IEKYRPTKFDEIVGNEETVCRLSVFATQGNA-----PNIIIAGPPGVGKTTTIQCLARIL 76 Query: 78 LGVNFR 83 LG +F+ Sbjct: 77 LGDSFK 82 >gi|289613128|emb|CBI59901.1| unnamed protein product [Sordaria macrospora] Length = 743 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 23/147 (15%) Query: 43 FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAKAGDLAALLT 101 F + K + + L VL GPPG+GKT A+ VA + + +SG + + +L A LT Sbjct: 506 FDDIVKGKGQGLVCVLH-GPPGVGKTLTAECVAEYVQRPLYMVSSGDLGCVSSELDAQLT 564 Query: 102 NLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-LSRFT 155 + D R VL IDE + +E+ A+ D + MV SV + L +T Sbjct: 565 KIMDMTATWRAVLLIDEA---DVFLEQ---RALHDLHRNAMV-------SVFLRVLEYYT 611 Query: 156 --LIAATTRVGLLTNPLQDRFGIPIRL 180 L T RV + R IPIR Sbjct: 612 GILFLTTNRVTTFDEAFKSRIHIPIRY 638 >gi|262394814|ref|YP_003286668.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp. Ex25] gi|262338408|gb|ACY52203.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp. Ex25] Length = 426 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|261253458|ref|ZP_05946031.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio orientalis CIP 102891] gi|260936849|gb|EEX92838.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio orientalis CIP 102891] Length = 427 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|260495116|ref|ZP_05815245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium sp. 3_1_33] gi|260197559|gb|EEW95077.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium sp. 3_1_33] Length = 424 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 31/145 (21%) Query: 4 REGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKAR--AEALD- 55 R+G S N + + I LL+P L+E+ GQ EA L V + R D Sbjct: 57 RDGKSSNNKNYK-GKIELLKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDD 115 Query: 56 --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL 103 +VL VGP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 116 DGVELQKSNVLLVGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRL 175 Query: 104 ----------EDRDVLFIDEIHRLS 118 +R +++IDE +++ Sbjct: 176 IQACNYDIPNAERGIIYIDEFDKIA 200 >gi|218197157|gb|EEC79584.1| hypothetical protein OsI_20758 [Oryza sativa Indica Group] Length = 495 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 14/81 (17%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LA+ +AR V F I +AG D+ +++ NL Sbjct: 112 NILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVESIICNLLAAAKFNV 171 Query: 104 --EDRDVLFIDEIHRLSIIVE 122 +R +++IDE+ +L VE Sbjct: 172 EATERGIVYIDEVDKLIKKVE 192 >gi|159478022|ref|XP_001697103.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] gi|158274577|gb|EDP00358.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] Length = 689 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ +A E GV F S SG Sbjct: 252 CLLVGPPGTGKTLLAKAIAGEAGVPFFSVSG 282 >gi|160902924|ref|YP_001568505.1| ATP-dependent protease ATP-binding subunit [Petrotoga mobilis SJ95] gi|160360568|gb|ABX32182.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Petrotoga mobilis SJ95] Length = 409 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 +VL +GP G GKT +AQ +AR L V F + +AG + + N+ Sbjct: 108 NVLLIGPTGTGKTLIAQTLARILDVPFAIADATTLTEAGYVGEDVENVILRLLQACDYDV 167 Query: 104 --EDRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 168 KKAEKGIIYIDEIDKIS 184 >gi|51894333|ref|YP_077024.1| cell division protein [Symbiobacterium thermophilum IAM 14863] gi|81387870|sp|Q67JH0|FTSH3_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 3 gi|51858022|dbj|BAD42180.1| cell division protein [Symbiobacterium thermophilum IAM 14863] Length = 626 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 193 VLLYGPPGTGKTLLAKAVAGEAGVPFFSISG 223 >gi|33592843|ref|NP_880487.1| ATP-dependent protease ATP-binding subunit [Bordetella pertussis Tohama I] gi|46576479|sp|Q7VXI6|CLPX_BORPE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|33572491|emb|CAE42063.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella pertussis Tohama I] gi|332382256|gb|AEE67103.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella pertussis CS] Length = 434 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 +++ +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDV 174 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRAIIYIDEIDKIS 191 >gi|84514770|ref|ZP_01002133.1| Chaperonin clpA/B [Loktanella vestfoldensis SKA53] gi|84510929|gb|EAQ07383.1| Chaperonin clpA/B [Loktanella vestfoldensis SKA53] Length = 772 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 23/162 (14%) Query: 9 SRNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPP 63 ++NVS++DA++ ++L+ GQ A L I+ A+A + + + LF GP Sbjct: 446 AKNVSKDDAEVLKDLEKSLKRVVFGQDRAIEALSSAIKLARAGLREPEKPIGNYLFAGPT 505 Query: 64 GLGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD- 107 G+GKT +A+ +A LGV R P D +LT+ D++ Sbjct: 506 GVGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQNP 565 Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 VL +DE+ + V IL M+ +L G R+V Sbjct: 566 HCVLLLDEMEKAHPDVYNILLQVMDHGKLTDHNGRTTDFRNV 607 >gi|118580667|ref|YP_901917.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM 2379] gi|118503377|gb|ABK99859.1| membrane protease FtsH catalytic subunit [Pelobacter propionicus DSM 2379] Length = 621 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ +A E GV F S SG Sbjct: 192 VLLMGPPGTGKTLLAKAIAGEAGVPFFSISG 222 >gi|116748161|ref|YP_844848.1| ATP-dependent protease La [Syntrophobacter fumaroxidans MPOB] gi|302425112|sp|A0LG61|LON2_SYNFM RecName: Full=Lon protease 2; AltName: Full=ATP-dependent protease La 2 gi|116697225|gb|ABK16413.1| ATP-dependent protease La [Syntrophobacter fumaroxidans MPOB] Length = 790 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 53/260 (20%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106 + FVGPPG+GKT+L Q +AR LG F R + G V +A G + L R Sbjct: 358 LCFVGPPGVGKTSLGQSIARTLGRKFLRISLGGVRDEAEIRGHRRTYVGALPGRIVQGLR 417 Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V +DEI ++ S + E+L P D +G V +LS Sbjct: 418 RVGSNNPVFMLDEIDKIGMDFRGDPSSALLEVLDPEQNFSFSDHYLG-------VPFDLS 470 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLA----- 202 R IA + + L+DR + I + Y E+ K +V+R GL Sbjct: 471 RVMFIATGNLLDTVPAALKDRMEV-IEIPGYTAEEKLEIARKFLVERETANHGLTSDHIR 529 Query: 203 VTDEAACEIAMRSRGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261 + ++A EI R R AG R L+ R+ A V + + IA+ A + ID G Sbjct: 530 IGEDAILEII---RSYTREAGVRSLQ--RNLASV--CRNTAKAIAEGASGPIHIDASGIP 582 Query: 262 QL--DLRYLTMIA-RNFGGG 278 ++ +++L A R++G G Sbjct: 583 EILGPVQFLPETATRSWGCG 602 >gi|326445521|ref|ZP_08220255.1| hypothetical protein SclaA2_30862 [Streptomyces clavuligerus ATCC 27064] Length = 1106 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 72/191 (37%), Gaps = 39/191 (20%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELG------------VNFRSTSGPVIAKAGDLAALLTN 102 +H++F GPPG GKTT+A++ L V+ G I L + Sbjct: 883 NHLVFAGPPGTGKTTVARLYGELLSSLEVLPRGQLVEVSRADLVGRYIGHTAQLTKEVFQ 942 Query: 103 LEDRDVLFIDEIHRL---------SIIVEE---ILYPAMEDFQLDLMVGEGPSARSVKIN 150 VLFIDE + L S +E L MED + +++V A Sbjct: 943 RALGGVLFIDEAYTLTPESGGPGSSDFGQEAVDTLLKLMEDHRDEVVV----IAAGYTRE 998 Query: 151 LSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209 + RF L +NP L RF + Y ++L TIVQR A G E A Sbjct: 999 MDRF----------LGSNPGLASRFTRTVEFPNYSSDELVTIVQRHAADNGYDCAPETAA 1048 Query: 210 EIAMRSRGTPR 220 + PR Sbjct: 1049 GLHTHFETIPR 1059 >gi|322412086|gb|EFY02994.1| DNA polymerase III subunits gamma and tau [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 559 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 R +T +E GQ + LK +E+ K + H LF GP G GKT+ A++ A+ + Sbjct: 10 RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 + P D+ +TN DV+ ID Sbjct: 65 NQVNGEPC--NQCDICRDITNGSLEDVIEID 93 >gi|300871120|ref|YP_003785992.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brachyspira pilosicoli 95/1000] gi|300688820|gb|ADK31491.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brachyspira pilosicoli 95/1000] Length = 402 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL----------T 101 +VL +GP G GKT LA+ +A+ L V F + +AG D+ +L Sbjct: 110 NVLLIGPTGSGKTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQNADGDV 169 Query: 102 NLEDRDVLFIDEIHRLS 118 L ++ +++IDEI ++S Sbjct: 170 KLAEKGIIYIDEIDKIS 186 >gi|296237052|ref|XP_002763589.1| PREDICTED: replication factor C subunit 1, partial [Callithrix jacchus] Length = 827 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 23/37 (62%) Query: 46 AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 A K + VL GPPG+GKTT A +V +ELG ++ Sbjct: 641 AGKDDGSSFKAVLLSGPPGVGKTTTASLVCQELGYSY 677 >gi|296116538|ref|ZP_06835148.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter hansenii ATCC 23769] gi|295976750|gb|EFG83518.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter hansenii ATCC 23769] Length = 419 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 109 AKSNIMLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 168 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 169 YNVEKAQRGIVYIDEIDKIS 188 >gi|295103468|emb|CBL01012.1| ATP-dependent metalloprotease FtsH [Faecalibacterium prausnitzii SL3/3] Length = 616 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E V F S SG + A + L +++ + Sbjct: 203 ILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 262 Query: 109 LFIDEI 114 +FIDEI Sbjct: 263 VFIDEI 268 >gi|291548433|emb|CBL21541.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus sp. SR1/5] Length = 437 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 28/146 (19%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRT----LEEFT-GQVEACSNLKVFIEAAKAR---AE 52 +M+ E + + + + I+LL+P L+E+ GQ +A L V + R + Sbjct: 45 IMEEEFSMYDHEADYETGINLLKPEEIHSILDEYVIGQDDAKKALSVAVYNHYKRILASR 104 Query: 53 ALD------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--- 103 LD ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 105 NLDVELQKSNILMLGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLK 164 Query: 104 ----EDRD-------VLFIDEIHRLS 118 D D +++IDEI +++ Sbjct: 165 IIQAADYDIERAQYGIIYIDEIDKIT 190 >gi|293365855|ref|ZP_06612560.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus oralis ATCC 35037] gi|315613540|ref|ZP_07888447.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis ATCC 49296] gi|331265985|ref|YP_004325615.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus oralis Uo5] gi|291315679|gb|EFE56127.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus oralis ATCC 35037] gi|315314231|gb|EFU62276.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis ATCC 49296] gi|326682657|emb|CBZ00274.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus oralis Uo5] Length = 410 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|237752785|ref|ZP_04583265.1| ATP-dependent protease ATP-binding subunit [Helicobacter winghamensis ATCC BAA-430] gi|229376274|gb|EEO26365.1| ATP-dependent protease ATP-binding subunit [Helicobacter winghamensis ATCC BAA-430] Length = 416 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 35/152 (23%) Query: 2 MDREGLLSRNVSQEDADISLLRPRTL-----EEFTGQVEACSNLKVFIEAAKAR---AEA 53 +DRE V++E D+ ++ P+ L E GQ +A V + R A Sbjct: 46 IDRE----EEVAKESDDLKIVSPKELKAVLDEYVIGQEKAKKVFSVAVYNHYKRVLQGAA 101 Query: 54 LD---------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL 100 +D ++L +GP G GKT +AQ +A+ L + + +AG D+ +L Sbjct: 102 IDDDDTEITKSNILLIGPTGSGKTLMAQTLAKFLNIPIAICDATSLTEAGYVGEDVENIL 161 Query: 101 TNL----------EDRDVLFIDEIHRLSIIVE 122 T L + ++FIDEI ++S + E Sbjct: 162 TRLLQEAGGDIQKAQKGIVFIDEIDKISRLSE 193 >gi|237751691|ref|ZP_04582171.1| ATP-dependent zinc metalloproteinase [Helicobacter bilis ATCC 43879] gi|229373057|gb|EEO23448.1| ATP-dependent zinc metalloproteinase [Helicobacter bilis ATCC 43879] Length = 584 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL VGPPG+GKT +A+ +A E GV F SG Sbjct: 220 VLLVGPPGVGKTMIAKAIAGESGVPFFYHSGS 251 >gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis] gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis] Length = 339 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81 RP+ +++ Q E L +E L H+LF GPPG GKTT A +A +L G Sbjct: 16 RPKQVKDVAHQEEVVRALTNTLETGN-----LPHLLFYGPPGTGKTTTALAIAHQLFGPE 70 Query: 82 FRS 84 ++S Sbjct: 71 YKS 73 >gi|145492132|ref|XP_001432064.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124399173|emb|CAK64667.1| unnamed protein product [Paramecium tetraurelia] Length = 443 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 21/186 (11%) Query: 43 FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAK-AGDLAALL 100 F E A+ + +L GPPG GKT LA+ A E G F +S +I+K G+ L+ Sbjct: 168 FFEGARTPWKG---ILMYGPPGTGKTYLAKACATEAEGTFFSVSSADLISKYVGESEKLI 224 Query: 101 TNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV---GEGPSARSVKINL 151 L + ++FIDEI + E A + +V G G + V Sbjct: 225 KTLFTMAREQKPSIIFIDEIDSMCGARGEGQNDASRRVITEFLVQMQGVGHDDKGV---- 280 Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 ++ AT L ++ RF I + +++ + ++Q K T +T E ++ Sbjct: 281 ---LVLGATNLPWALDTAIRRRFEKRIYIPLPDVQAREYMIQNSLKQTKTTLTKEQFEDL 337 Query: 212 AMRSRG 217 A ++ G Sbjct: 338 ASKTEG 343 >gi|119177229|ref|XP_001240416.1| hypothetical protein CIMG_07579 [Coccidioides immitis RS] Length = 1307 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 20/133 (15%) Query: 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD----HVLFVGPPGLGKTTLAQVVA- 75 L+R + LEE Q ++K ++ +++ +L+ +V+F G PG GKTT A++ A Sbjct: 169 LMRYQGLEEVKQQF---LDIKSKVDICESQGRSLNRERFNVVFQGNPGTGKTTFARLYAE 225 Query: 76 --RELGV----NFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEI 124 +GV F+ T+G +A G A +ED VLFIDE ++L+ E Sbjct: 226 FLHSVGVINSSYFKETAGIALAVKGAEGA-QDEVEDILNHNGGVLFIDEAYQLTAAYIEA 284 Query: 125 LYPAMEDFQLDLM 137 L DF L M Sbjct: 285 LGKQALDFLLKAM 297 >gi|71003365|ref|XP_756363.1| hypothetical protein UM00216.1 [Ustilago maydis 521] gi|46095800|gb|EAK81033.1| hypothetical protein UM00216.1 [Ustilago maydis 521] Length = 384 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+T++E Q + LK + + L H+LF GPPG GKT+ +AR+L Sbjct: 36 RPKTIDEVAAQEHTVAVLKKTL-----LSNNLPHMLFYGPPGTGKTSTILALARQL 86 >gi|326563260|gb|EGE13527.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis 46P47B1] Length = 438 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108 ++L +GP G GKT LAQ +A+ L V F + +AG + + N+ D DV Sbjct: 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYDV 198 Query: 109 -------LFIDEIHRLS 118 ++IDEI ++S Sbjct: 199 QKAEQGIIYIDEIDKIS 215 >gi|305691182|gb|ADM65834.1| leaf rust resistance protein Lr10 [Triticum turgidum subsp. dicoccoides] Length = 810 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 29/44 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100 V VG GLGKTTLA+ V EL +NF + I+++ D+AA+L Sbjct: 193 VSIVGCAGLGKTTLAKQVYDELRINFEYRAFVSISRSPDMAAIL 236 >gi|297811665|ref|XP_002873716.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319553|gb|EFH49975.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 685 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL GPPG GKT LA+ +A E GV F S SG + G A+ + +L +R + Sbjct: 259 VLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNRAKANSPCI 318 Query: 109 LFIDEI 114 +FIDEI Sbjct: 319 VFIDEI 324 >gi|297155325|gb|ADI05037.1| hypothetical protein SBI_01916 [Streptomyces bingchenggensis BCW-1] Length = 1103 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 79/201 (39%), Gaps = 41/201 (20%) Query: 56 HVLFVGPPGLGKTTLAQVVAR---ELGV-----NFRSTSGPVIAKAGDLAALLT----NL 103 H++F GPPG GKTT+A++ +LGV + ++A+ A+ T N Sbjct: 601 HLVFAGPPGTGKTTVARLYGSILAQLGVLPSGHLVEVSRADLVAQVIGGTAIKTTEAFNE 660 Query: 104 EDRDVLFIDEIHRLSI----------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR 153 VLFIDE + L+ + L MED + D++V A ++ Sbjct: 661 AIGGVLFIDEAYTLTPEGGSSNDFGREAVDTLLKLMEDHREDVVV----IAAGYSAEMTS 716 Query: 154 FTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLT----GLAVTDEAA 208 F L++NP L RF I Y + DL TI + G T+ A Sbjct: 717 F----------LVSNPGLASRFTRTIEFTNYSVTDLVTITESMCASHQYELGPGTTEALA 766 Query: 209 CEIAMRSRGTPRIAGRLLRRV 229 RG GR RRV Sbjct: 767 AHFEAMDRGASFGNGRAARRV 787 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 36/170 (21%) Query: 56 HVLFVGPPGLGKTTLAQVVA---RELGVNFRST---------SGPVIAKAGDLAALLTNL 103 H++F GPPG GKTT+A++ A LGV R G + L + Sbjct: 878 HLVFSGPPGTGKTTVARLYAGLLHSLGVLPRGQLVEVARADLVGRYVGHTAQLTKEVFES 937 Query: 104 EDRDVLFIDEIHRLSIIVE---------EILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 VLFIDE + L+ + L MED + ++V + RF Sbjct: 938 AMGGVLFIDEAYTLTPEGNSSDFGREAVDTLLKLMEDHRDQVVV----IVAGYTAEMRRF 993 Query: 155 TLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203 L +NP L RF + Y ++L TI++R A+ +G A Sbjct: 994 ----------LDSNPGLASRFSRFVEFENYTTDELLTILERHAEESGYAC 1033 >gi|289642581|ref|ZP_06474723.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca glomerata] gi|289507576|gb|EFD28533.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca glomerata] Length = 720 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Query: 34 VEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 +E +K F+E A+ VL GPPG GKT LA+ VA E GV F S SG Sbjct: 167 IEELQEIKEFLENPGKFQAMGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 224 >gi|237743261|ref|ZP_04573742.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 7_1] gi|229433040|gb|EEO43252.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 7_1] Length = 424 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 31/145 (21%) Query: 4 REGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKAR--AEALD- 55 R+G S N + + I LL+P L+E+ GQ EA L V + R D Sbjct: 57 RDGKSSNNKNYK-GKIELLKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDD 115 Query: 56 --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL 103 +VL VGP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 116 DGVELQKSNVLLVGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRL 175 Query: 104 ----------EDRDVLFIDEIHRLS 118 +R +++IDE +++ Sbjct: 176 IQACNYDIPNAERGIIYIDEFDKIA 200 >gi|289207759|ref|YP_003459825.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thioalkalivibrio sp. K90mix] gi|288943390|gb|ADC71089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thioalkalivibrio sp. K90mix] Length = 425 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 29/128 (22%) Query: 20 SLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA----------LDHVLFVGPPG 64 SL +PR + E GQ A L V + R EA +++ +GP G Sbjct: 63 SLPKPREIREILDDYVIGQTSAKKILSVAVYNHYKRLEARAGKDDVELSKSNIMLIGPTG 122 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV-------LF 110 GKT LA+ +AR L V F + +AG + + N+ D DV ++ Sbjct: 123 SGKTLLAETLARVLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAENGIVY 182 Query: 111 IDEIHRLS 118 IDEI ++S Sbjct: 183 IDEIDKVS 190 >gi|241957153|ref|XP_002421296.1| replication factor C subunit, putative [Candida dubliniensis CD36] gi|223644640|emb|CAX40630.1| replication factor C subunit, putative [Candida dubliniensis CD36] Length = 364 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP++L + + Q +KV + K+ L H+LF GPPG GKT+ +A+EL Sbjct: 32 RPKSLSDVSSQEHT---IKVLTQTIKSGN--LPHMLFYGPPGTGKTSTILALAKEL 82 >gi|213513822|ref|NP_001134786.1| replication factor C subunit 2 [Salmo salar] gi|209735998|gb|ACI68868.1| Replication factor C subunit 2 [Salmo salar] Length = 353 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP L E G E S L+VF AR + +++ GPPG GKTT +AR L Sbjct: 42 RPLKLNEIVGNEETVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCLARAL 92 >gi|209882379|ref|XP_002142626.1| MIT domain-containing protein [Cryptosporidium muris RN66] gi|209558232|gb|EEA08277.1| MIT domain-containing protein [Cryptosporidium muris RN66] Length = 434 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 8/183 (4%) Query: 43 FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAK-AGDLAALL 100 F + K + +L GPPG GKT LA+ A EL F + +S + +K G+ L+ Sbjct: 138 FPQLFKGNLKPWKGILLYGPPGTGKTYLAKACATELNGTFLTLSSADLTSKWQGESEKLI 197 Query: 101 TNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 +L D ++FIDE+ L + + + + +V + N Sbjct: 198 KSLFDIAREKAPSIIFIDEVDSLCSSRNDQENESSRRIKTEFLVQMDGINSGILDNNKSI 257 Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214 ++ AT L ++ RF I + + K I+ +G K T +TD+ I+ + Sbjct: 258 LVLGATNVPWDLDIAIRRRFERRIYIPLPDYSARKQIILQGLKDTNHNLTDDDISYISEQ 317 Query: 215 SRG 217 + G Sbjct: 318 TNG 320 >gi|194208909|ref|XP_001488280.2| PREDICTED: similar to Paraplegin (Spastic paraplegia protein 7) [Equus caballus] Length = 765 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 20/134 (14%) Query: 1 MMDREGLLSRNVSQEDADISLLRPRT-----LEEFTGQVEACSNLKVFIEAAKA------ 49 M REG S + A +++ +T ++ G EA +K F++ K+ Sbjct: 249 MTGREGGFSAFNQLKMARFTIVDGKTGKGVSFKDVAGMHEAKLEVKEFVDYLKSPERFLQ 308 Query: 50 -RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTN 102 A+ L +GPPG GKT LA+ VA E V F + +GP + A + +L Sbjct: 309 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKE 368 Query: 103 LEDRD--VLFIDEI 114 R +++IDEI Sbjct: 369 ARSRAPCIVYIDEI 382 >gi|165934065|gb|ABY74559.1| katanin p60 ATPase-containing subunit A-like 1 (predicted) [Callithrix jacchus] Length = 322 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL VGPPG GKT LA+ VA E G F + S + Sbjct: 76 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 109 >gi|160887744|ref|ZP_02068747.1| hypothetical protein BACUNI_00146 [Bacteroides uniformis ATCC 8492] gi|270295690|ref|ZP_06201891.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156862775|gb|EDO56206.1| hypothetical protein BACUNI_00146 [Bacteroides uniformis ATCC 8492] gi|270274937|gb|EFA20798.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 604 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + LK I K L H LF GP G+GKTT A++ A+ + Sbjct: 12 RPSTFESVVGQRALTTTLKNAIATGK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66 Query: 82 FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127 + G + A N+ + D + + + +VE++ P Sbjct: 67 SPTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116 >gi|148673904|gb|EDL05851.1| katanin p60 subunit A-like 1, isoform CRA_a [Mus musculus] Length = 490 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL VGPPG GKT LA+ VA E G F + S + Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277 >gi|148977889|ref|ZP_01814442.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium SWAT-3] gi|145962835|gb|EDK28107.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium SWAT-3] Length = 426 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|154344573|ref|XP_001568228.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134065565|emb|CAM43335.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 361 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDL---AALLTNLEDR---DV 108 VL GPPG GKT LA+ +A+ELG +F + + I GD AA + L + V Sbjct: 138 VLLYGPPGTGKTLLARALAKELGCSFINVNTESIFSKWVGDTERNAAAIFTLAAKISPCV 197 Query: 109 LFIDEIHRL 117 +F+DEI L Sbjct: 198 IFVDEIDSL 206 >gi|51891498|ref|YP_074189.1| Lon-like ATP-dependent protease [Symbiobacterium thermophilum IAM 14863] gi|51855187|dbj|BAD39345.1| Lon-like ATP-dependent protease [Symbiobacterium thermophilum IAM 14863] Length = 579 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP + +E GQ E L+ + + HV+ GPPG+GKT A++V E N Sbjct: 64 RPASFDEIVGQEEGIRALRAALCGPNPQ-----HVIIYGPPGVGKTAAARLVLEEAKRNP 118 Query: 83 RSTSGP 88 S GP Sbjct: 119 ASPFGP 124 >gi|161609274|ref|NP_888798.2| ATP-dependent protease ATP-binding subunit [Bordetella bronchiseptica RB50] gi|161610395|ref|NP_884266.2| ATP-dependent protease ATP-binding subunit [Bordetella parapertussis 12822] gi|46576487|sp|Q7W8X1|CLPX_BORPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|46576495|sp|Q7WK82|CLPX_BORBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX Length = 434 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 +++ +GP G GKT LAQ +AR L V F + +AG + LL N Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDV 174 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRAIIYIDEIDKIS 191 >gi|28897692|ref|NP_797297.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio parahaemolyticus RIMD 2210633] gi|153839647|ref|ZP_01992314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus AQ3810] gi|260366280|ref|ZP_05778736.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus K5030] gi|260879438|ref|ZP_05891793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus AN-5034] gi|260898291|ref|ZP_05906787.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus Peru-466] gi|31340005|sp|Q87R79|CLPX_VIBPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|28805905|dbj|BAC59181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus RIMD 2210633] gi|149746837|gb|EDM57825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus AQ3810] gi|308088429|gb|EFO38124.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus Peru-466] gi|308093194|gb|EFO42889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus AN-5034] gi|308114044|gb|EFO51584.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus K5030] gi|328473325|gb|EGF44173.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio parahaemolyticus 10329] Length = 426 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|85707625|ref|ZP_01038691.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1] gi|85689159|gb|EAQ29162.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1] Length = 420 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 25/118 (21%) Query: 26 TLEEFT-GQVEACSNLKVFIEAAKARAE----------ALDHVLFVGPPGLGKTTLAQVV 74 TL ++ GQ A NL V + R + A ++L VGP G GKT LAQ + Sbjct: 73 TLNDYVIGQNSAKRNLSVAVHNHYKRLKHSGKADGVELAKSNILLVGPTGTGKTLLAQTL 132 Query: 75 ARELGVNFRSTSGPVIAKAGDLAALLTN-----LEDRD---------VLFIDEIHRLS 118 AR V F + +AG + + N L+ D +++IDEI +++ Sbjct: 133 ARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQSSDYNVEKAQHGIVYIDEIDKIT 190 >gi|150392225|ref|YP_001322274.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens QYMF] gi|310943093|sp|A6TWP7|FTSH2_ALKMQ RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|149952087|gb|ABR50615.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens QYMF] Length = 689 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 V+ N K +IE A +L +GPPG GKT L + VA E GV F S SG Sbjct: 181 VDFLKNPKKYIELG---ARIPKGILMIGPPGTGKTYLTKAVAGEAGVPFFSISG 231 >gi|332072416|gb|EGI82899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA17570] gi|332072739|gb|EGI83220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA17545] Length = 401 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 105 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 164 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 165 ERAERGIIYVDEIDKIA 181 >gi|328949928|ref|YP_004367263.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis DSM 14884] gi|328450252|gb|AEB11153.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis DSM 14884] Length = 621 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 22/36 (61%), Positives = 23/36 (63%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 AE VL VGPPG GKT LA+ VA E GV F S S Sbjct: 195 AEIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS 230 >gi|326577945|gb|EGE27809.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis O35E] Length = 438 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108 ++L +GP G GKT LAQ +A+ L V F + +AG + + N+ D DV Sbjct: 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYDV 198 Query: 109 -------LFIDEIHRLS 118 ++IDEI ++S Sbjct: 199 QKAEKGIIYIDEIDKIS 215 >gi|323699863|ref|ZP_08111775.1| ATPase associated with various cellular activities AAA_5 [Desulfovibrio sp. ND132] gi|323459795|gb|EGB15660.1| ATPase associated with various cellular activities AAA_5 [Desulfovibrio desulfuricans ND132] Length = 362 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 26/193 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116 +L GP G GKT LA+ VA LGV F + + D A L ED+ + Sbjct: 107 ILLDGPQGSGKTVLARKVAESLGVRFIFFNCSAVYDPTDFLASLQPAEDQSKRTFTWVE- 165 Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176 + I+ + A + + + + E R ++R +++A + NP+ F I Sbjct: 166 -TDILRALTEAAESNERFLIFLDEFNRCRE----MARNGVMSALDATRKMFNPVNGEF-I 219 Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA---------------CEIAMRSRGTPRI 221 PI N I + GA+ TG D A E + SR P + Sbjct: 220 PIPENVQWI----AAINNGAQFTGTTAVDPAQLDRFAPLKVDYPPPEAEARLLSRTYPDV 275 Query: 222 AGRLLRRVRDFAE 234 R +RRV AE Sbjct: 276 PLREIRRVVKVAE 288 >gi|313680818|ref|YP_004058557.1| membrane protease ftsh catalytic subunit [Oceanithermus profundus DSM 14977] gi|313153533|gb|ADR37384.1| membrane protease FtsH catalytic subunit [Oceanithermus profundus DSM 14977] Length = 618 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 22/36 (61%), Positives = 23/36 (63%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 AE VL VGPPG GKT LA+ VA E GV F S S Sbjct: 197 AEIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS 232 >gi|307705961|ref|ZP_07642786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis SK564] gi|307620471|gb|EFN99582.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis SK564] Length = 401 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 105 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 164 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 165 ERAERGIIYVDEIDKIA 181 >gi|260102341|ref|ZP_05752578.1| cell division protein FtsH [Lactobacillus helveticus DSM 20075] gi|260083850|gb|EEW67970.1| cell division protein FtsH [Lactobacillus helveticus DSM 20075] Length = 721 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E V F S SG V A + L N + + Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|255263549|ref|ZP_05342891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium sp. R2A62] gi|255105884|gb|EET48558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium sp. R2A62] Length = 422 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 17/98 (17%) Query: 38 SNLKVFIEAAKARAE---ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 ++ K AAK+ + A +++ VGP G GKT LAQ +AR L V F + +AG Sbjct: 93 NHYKRLNHAAKSGGDIELAKSNIMLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAG 152 Query: 95 DLAALLTNL--------------EDRDVLFIDEIHRLS 118 + + N+ R +++IDE+ +++ Sbjct: 153 YVGEDVENIILKLLQASEYNVERAQRGIVYIDEVDKIT 190 >gi|169402701|gb|ACA53509.1| katanin p60 ATPase-containing subunit A-like 1 (predicted) [Callicebus moloch] Length = 322 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL VGPPG GKT LA+ VA E G F + S + Sbjct: 76 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 109 >gi|164686639|ref|ZP_02210667.1| hypothetical protein CLOBAR_00232 [Clostridium bartlettii DSM 16795] gi|164604368|gb|EDQ97833.1| hypothetical protein CLOBAR_00232 [Clostridium bartlettii DSM 16795] Length = 672 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 E+ + V+ N K +IE A +L VGPPG GKT L++ VA E GV F + SG Sbjct: 179 EDLSEVVDFLKNPKRYIELG---ARIPKGILMVGPPGTGKTYLSRAVAGEAGVPFFTISG 235 >gi|153835694|ref|ZP_01988361.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio harveyi HY01] gi|156973713|ref|YP_001444620.1| ATP-dependent protease ATP-binding subunit [Vibrio harveyi ATCC BAA-1116] gi|269961044|ref|ZP_06175413.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio harveyi 1DA3] gi|166215218|sp|A7MV82|CLPX_VIBHB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|148867675|gb|EDL66951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio harveyi HY01] gi|156525307|gb|ABU70393.1| hypothetical protein VIBHAR_01418 [Vibrio harveyi ATCC BAA-1116] gi|269834263|gb|EEZ88353.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio harveyi 1DA3] Length = 426 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|111610207|gb|ABH11595.1| cell division protein [Lactobacillus helveticus CNRZ32] gi|328463466|gb|EGF35117.1| cell division protein [Lactobacillus helveticus MTCC 5463] Length = 721 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E V F S SG V A + L N + + Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|91228616|ref|ZP_01262534.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus 12G01] gi|269965579|ref|ZP_06179693.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio alginolyticus 40B] gi|91187848|gb|EAS74162.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus 12G01] gi|269829804|gb|EEZ84039.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio alginolyticus 40B] Length = 426 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|124088814|ref|XP_001347246.1| AAA+-type ATPase [Paramecium tetraurelia strain d4-2] gi|50057635|emb|CAH03620.1| AAA+-type ATPase, putative [Paramecium tetraurelia] Length = 526 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 23/161 (14%) Query: 46 AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA-------- 97 A ++++ L ++LF G PG GKT A+++A G++F SG I K G+ A Sbjct: 276 AKQSQSTPLRNLLFHGQPGTGKTLFAKLLAYNSGLHFAIISGGDIEKLGEQAVPEIDKLF 335 Query: 98 ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE---GPSARSVKINLSRF 154 + + ++FIDE E I Y Q + SA S K + Sbjct: 336 SWCNSTPKGTLIFIDE-------AEAIFYKRSSSKQTSAALSTFLAQTSAVSKK-----Y 383 Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195 +LI AT L + DR ++ ++ E ++++G Sbjct: 384 SLILATNLPNKLDEAILDRIDQIVKFDYLNEEQRVKLLKKG 424 >gi|73669574|ref|YP_305589.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro] gi|72396736|gb|AAZ71009.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro] Length = 763 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79 E+ G EA ++ IE E D VL GPPG GKT LA+ VA E Sbjct: 215 EDLGGLKEAIGKVREMIELPLNHPELFDRLGIDAPKGVLLHGPPGTGKTLLAKAVANESD 274 Query: 80 VNFRSTSGPVI 90 F S +GP I Sbjct: 275 AYFISINGPEI 285 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 20/83 (24%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----- 106 EA VL GPPG GKT LA+ +A E NF + AK DL + ++ Sbjct: 520 EAPKGVLLYGPPGTGKTLLAKAIAHESDANF------ITAKGSDLLSKWYGESEKRIAEV 573 Query: 107 ---------DVLFIDEIHRLSII 120 ++F+DE+ L+ I Sbjct: 574 FTRARQVAPSIIFLDELDSLAPI 596 >gi|56695905|ref|YP_166256.1| ATP-dependent protease ATP-binding subunit ClpX [Ruegeria pomeroyi DSS-3] gi|81350417|sp|Q5LUP9|CLPX_SILPO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|56677642|gb|AAV94308.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria pomeroyi DSS-3] Length = 424 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 113 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 172 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 173 YNVERAQRGIVYIDEVDKIT 192 >gi|32474395|ref|NP_867389.1| hypothetical protein RB6669 [Rhodopirellula baltica SH 1] gi|32444933|emb|CAD74935.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 1784 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 R + + +L + PPG GKTTL + +A LG+ F +GP I Sbjct: 1296 RTDRMGLLLLISPPGYGKTTLMEYIASRLGLVFMKINGPAI 1336 >gi|15639499|ref|NP_218949.1| ATP-dependent protease ATP-binding subunit ClpX [Treponema pallidum subsp. pallidum str. Nichols] gi|189025738|ref|YP_001933510.1| ATP-dependent protease ATP-binding subunit ClpX [Treponema pallidum subsp. pallidum SS14] gi|6225173|sp|O83521|CLPX_TREPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238689324|sp|B2S3A2|CLPX_TREPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|3322800|gb|AAC65496.1| ATP-dependent Clp protease subunit X (clpX) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018313|gb|ACD70931.1| ATP-dependent Clp protease subunit X [Treponema pallidum subsp. pallidum SS14] gi|291059885|gb|ADD72620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema pallidum subsp. pallidum str. Chicago] Length = 415 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------------- 102 +VL +GP G GKT LA+ +++++ V F + +AG + + N Sbjct: 112 NVLLIGPTGSGKTLLAKTLSQKMKVPFAIADATTLTEAGYVGEDVENILLKLVQNANGDV 171 Query: 103 -LEDRDVLFIDEIHRLS 118 L +R ++FIDEI ++S Sbjct: 172 ALAERGIIFIDEIDKIS 188 >gi|326914238|ref|XP_003203433.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like [Meleagris gallopavo] Length = 462 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL VGPPG GKT LA+ VA E G F + S + Sbjct: 216 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 249 >gi|326576474|gb|EGE26382.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis CO72] Length = 438 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108 ++L +GP G GKT LAQ +A+ L V F + +AG + + N+ D DV Sbjct: 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYDV 198 Query: 109 -------LFIDEIHRLS 118 ++IDEI ++S Sbjct: 199 QKAEKGIIYIDEIDKIS 215 >gi|326565912|gb|EGE16073.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis 103P14B1] gi|326575438|gb|EGE25363.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis 101P30B1] Length = 438 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108 ++L +GP G GKT LAQ +A+ L V F + +AG + + N+ D DV Sbjct: 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYDV 198 Query: 109 -------LFIDEIHRLS 118 ++IDEI ++S Sbjct: 199 QKAEKGIIYIDEIDKIS 215 >gi|319787635|ref|YP_004147110.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudoxanthomonas suwonensis 11-1] gi|317466147|gb|ADV27879.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudoxanthomonas suwonensis 11-1] Length = 429 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 29/133 (21%) Query: 15 EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE----------ALDHVLF 59 + A SL +PR + E GQ A L V + R E A ++L Sbjct: 60 QSARSSLPKPREILEVLDQYVIGQQRAKKTLAVAVYNHYKRIESRQRNEDVELAKSNILL 119 Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108 VGP G GKT LA+ +AR L V F + +AG + + N+ D DV Sbjct: 120 VGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQ 179 Query: 109 ---LFIDEIHRLS 118 ++IDEI ++S Sbjct: 180 QGIVYIDEIDKIS 192 >gi|325104588|ref|YP_004274242.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pedobacter saltans DSM 12145] gi|324973436|gb|ADY52420.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pedobacter saltans DSM 12145] Length = 413 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 29/143 (20%) Query: 5 EGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFI---------EAAKAR 50 E SR A ++LL+P R L+++ GQ A L V + + K Sbjct: 45 EEFASRKNKNVQATLTLLKPLEIKRHLDQYVIGQDSAKKVLSVAVYNHYKRLNQKVGKDE 104 Query: 51 AE-ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-- 103 E +++ VG G GKT LA+ +A+ L V F V+ +AG D+ ++LT L Sbjct: 105 VEIEKSNIMMVGETGTGKTLLAKTIAKILNVPFCICDATVLTEAGYVGEDVESILTRLLQ 164 Query: 104 --------EDRDVLFIDEIHRLS 118 +R +++IDE+ +++ Sbjct: 165 AADYDVAAAERGIVYIDEVDKVA 187 >gi|306829878|ref|ZP_07463065.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus mitis ATCC 6249] gi|304427889|gb|EFM30982.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus mitis ATCC 6249] Length = 410 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|284928754|ref|YP_003421276.1| DNA polymerase III subunit gamma/tau [cyanobacterium UCYN-A] gi|284809213|gb|ADB94918.1| DNA polymerase III, subunit gamma/tau [cyanobacterium UCYN-A] Length = 726 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP+T + GQ V + R++ + H LF GP G GKT+ A++ A+ +N Sbjct: 12 RPQTFDGLVGQKSI-----VLTLSNAIRSQRISHAYLFTGPRGTGKTSTARIFAK--SIN 64 Query: 82 FRSTSGPVIAKAGDLAALLT 101 ++ P I+ G+ A T Sbjct: 65 CLASDAPSISPCGNCEACQT 84 >gi|240118149|ref|ZP_04732211.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae PID1] gi|268603866|ref|ZP_06138033.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae PID1] gi|268587997|gb|EEZ52673.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae PID1] Length = 414 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV 108 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L D DV Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 109 -------LFIDEIHRLS 118 ++IDEI ++S Sbjct: 174 EKARHGIVYIDEIDKIS 190 >gi|237712928|ref|ZP_04543409.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1] gi|262409631|ref|ZP_06086171.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22] gi|294647112|ref|ZP_06724716.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC 2a] gi|294807901|ref|ZP_06766682.1| DNA polymerase III, subunit gamma and tau [Bacteroides xylanisolvens SD CC 1b] gi|229447047|gb|EEO52838.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1] gi|262352484|gb|EEZ01584.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22] gi|292637529|gb|EFF55943.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC 2a] gi|294444899|gb|EFG13585.1| DNA polymerase III, subunit gamma and tau [Bacteroides xylanisolvens SD CC 1b] Length = 621 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + LK I K L H LF GP G+GKTT A++ A+ + Sbjct: 12 RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66 Query: 82 FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127 + G + A N+ + D + + + +VE++ P Sbjct: 67 TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126 Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 + F L E P ++ I ATT + + R I Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238 N +ED + A G+ EA IAM++ G R A + +V F + + Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237 Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275 I +++DA LL I GFD ++T ++ +F Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295 Query: 276 -GGGPVGIETISAGLS 290 G PV + + G S Sbjct: 296 VGKDPVTLPLLEVGAS 311 >gi|225861402|ref|YP_002742911.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae Taiwan19F-14] gi|225727587|gb|ACO23438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae Taiwan19F-14] Length = 402 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 106 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 165 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 166 ERAERGIIYVDEIDKIA 182 >gi|223039935|ref|ZP_03610218.1| putative Cell division protease FtsH homolog [Campylobacter rectus RM3267] gi|222878803|gb|EEF13901.1| putative Cell division protease FtsH homolog [Campylobacter rectus RM3267] Length = 555 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 192 VLMVGPPGVGKTLVAKAVAGEAGVPFFYQSG 222 >gi|218781695|ref|YP_002433013.1| ATPase AAA-2 domain protein [Desulfatibacillum alkenivorans AK-01] gi|218763079|gb|ACL05545.1| ATPase AAA-2 domain protein [Desulfatibacillum alkenivorans AK-01] Length = 593 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 26/114 (22%) Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNF-------RSTSGPVIAKAGDLAALLTNLEDRD 107 ++VL +GP G+GKT L +++A+++GV F S +G V DL L D D Sbjct: 113 NNVLLLGPTGVGKTYLIKLIAKKIGVPFVKGDATKFSETGYVGGDVEDLVRDLVREADDD 172 Query: 108 V-------LFIDEIHRLSII------------VEEILYPAMEDFQLDLMVGEGP 142 V ++IDEI +++ V+ L ME+ +++L V P Sbjct: 173 VELAQYGIIYIDEIDKIAAAHNMMGADVSRTGVQRALLKPMEETEVELKVPHDP 226 >gi|218779309|ref|YP_002430627.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfatibacillum alkenivorans AK-01] gi|226706583|sp|B8FA63|CLPX_DESAA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|218760693|gb|ACL03159.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfatibacillum alkenivorans AK-01] Length = 416 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 +VL +GP G GKT LAQ +AR L V F + +AG + +LL N + Sbjct: 112 NVLLIGPTGSGKTLLAQTLARFLDVPFTIADATALTEAGYVGEDVENIILSLLQNADYDV 171 Query: 105 ---DRDVLFIDEIHRLS 118 R +++IDEI +++ Sbjct: 172 ERAKRGIVYIDEIDKIA 188 >gi|209879988|ref|XP_002141434.1| chaperone clpB family protein [Cryptosporidium muris RN66] gi|209557040|gb|EEA07085.1| chaperone clpB family protein [Cryptosporidium muris RN66] Length = 1270 Score = 39.7 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 28/101 (27%) Query: 39 NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-------------------- 78 N IE +R E V+ +GPPG GKTTLA+ +A+ + Sbjct: 459 NEMALIERVLSR-EGKSSVMLIGPPGTGKTTLAEALAQRIIDGTVTSFLLGYKVFSVDIS 517 Query: 79 ----GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115 G FR G AK D+ L+ + +LF DE+H Sbjct: 518 NILSGSTFR---GEFEAKLHDILKLVNGHNQKVILFFDEMH 555 >gi|159484076|ref|XP_001700086.1| DNA replication factor C complex subunit 2 [Chlamydomonas reinhardtii] gi|158272582|gb|EDO98380.1| DNA replication factor C complex subunit 2 [Chlamydomonas reinhardtii] Length = 340 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81 RP+ + E G EA + L+V E + +V+ GPPG GKTT +A + LG N Sbjct: 30 RPQFINEIVGNTEAVARLQVIAEEGN-----MPNVILSGPPGTGKTTSILCLAHQLLGPN 84 Query: 82 FR 83 ++ Sbjct: 85 YK 86 >gi|163851840|ref|YP_001639883.1| ATP-dependent protease ATP-binding subunit [Methylobacterium extorquens PA1] gi|218530632|ref|YP_002421448.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium chloromethanicum CM4] gi|240139004|ref|YP_002963479.1| ATP-dependent Clp protease ATP-binding subunit clpX [Methylobacterium extorquens AM1] gi|254561599|ref|YP_003068694.1| ATP-dependent Clp protease ATP-binding subunit clpX [Methylobacterium extorquens DM4] gi|238687353|sp|A9W5F6|CLPX_METEP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763853|sp|B7KNT1|CLPX_METC4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|163663445|gb|ABY30812.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacterium extorquens PA1] gi|218522935|gb|ACK83520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacterium chloromethanicum CM4] gi|240008976|gb|ACS40202.1| ATP-dependent Clp protease ATP-binding subunit clpX [Methylobacterium extorquens AM1] gi|254268877|emb|CAX24838.1| ATP-dependent Clp protease ATP-binding subunit clpX [Methylobacterium extorquens DM4] Length = 423 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNIMLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|126664260|ref|ZP_01735252.1| putative DNA polymerase III [Flavobacteria bacterium BAL38] gi|126623792|gb|EAZ94488.1| putative DNA polymerase III [Flavobacteria bacterium BAL38] Length = 357 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 61/248 (24%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--- 79 RP+T ++ GQ + L IE A+AL LF GP G+GKTT A+++AR++ Sbjct: 12 RPQTFKDVVGQQAITNTLLNAIETNHL-AQAL---LFTGPRGVGKTTCARILARKINQEG 67 Query: 80 -------VNFRSTSGPVIAKAG--DLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124 +F + G D+ +++ + V IDE+H LS Sbjct: 68 YDDPYEDFSFNVFELDAASNNGVDDIRSIIDQVRIPPQTGKYKVYIIDEVHMLS------ 121 Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 F L E P ++ I ATT + IP L+ + Sbjct: 122 ----TSAFNAFLKTLEEPPKHAI--------FILATTEKHKI---------IPTILSRCQ 160 Query: 185 IEDLKTIVQRGAKL--------TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236 I D K I + AK G+ D+A IA ++ G R A + RV + Sbjct: 161 IFDFKRITIKDAKNHLAEIANEQGVTFEDDALHIIAQKADGAMRDALSIFDRVVSYC--- 217 Query: 237 HAKTITRE 244 K +TR+ Sbjct: 218 -GKNLTRQ 224 >gi|19113502|ref|NP_596710.1| ribosome biogenesis factor recycling AAA family ATPase [Schizosaccharomyces pombe 972h-] gi|74676032|sp|O60058|AFG2_SCHPO RecName: Full=ATPase family gene 2 protein gi|3116137|emb|CAA18886.1| ribosome biogenesis factor recycling AAA family ATPase [Schizosaccharomyces pombe] Length = 809 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Query: 32 GQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNFR 83 GQ E LK +E E VL GPPG KT A+ +A E G+NF Sbjct: 552 GQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAKAIATETGLNFI 611 Query: 84 STSGP 88 + GP Sbjct: 612 AVKGP 616 >gi|53804996|ref|YP_113346.1| cell division protein FtsH [Methylococcus capsulatus str. Bath] gi|81682587|sp|Q60AK1|FTSH_METCA RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|53758757|gb|AAU93048.1| cell division protein FtsH [Methylococcus capsulatus str. Bath] Length = 637 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E GV F + SG Sbjct: 227 VLLVGPPGTGKTLLARAVAGEAGVPFFNISG 257 >gi|327541325|gb|EGF27867.1| protein containing ATPase, AAA+ type, core domain [Rhodopirellula baltica WH47] Length = 1784 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 R + + +L + PPG GKTTL + +A LG+ F +GP I Sbjct: 1296 RTDRMGLLLLISPPGYGKTTLMEYIASRLGLVFMKINGPAI 1336 >gi|324507237|gb|ADY43072.1| Peroxisome assembly factor 2 [Ascaris suum] Length = 753 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 19/32 (59%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 V+ GPPG GKT A+ VA E V F S GP Sbjct: 516 VILYGPPGCGKTLTAKAVANEFKVTFLSVKGP 547 >gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864] Length = 347 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RPRT++E Q E + LK + + H+LF GPPG GKT+ +AR++ Sbjct: 30 RPRTVDEVAFQDEVVAVLKKSLTS-----NDFPHLLFYGPPGTGKTSTILAIARQM 80 >gi|313679507|ref|YP_004057246.1| ATP-dependent proteinase [Oceanithermus profundus DSM 14977] gi|313152222|gb|ADR36073.1| ATP-dependent proteinase [Oceanithermus profundus DSM 14977] Length = 808 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 86/226 (38%), Gaps = 49/226 (21%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100 +LFVGPPG+GKT++A+ +AR LG + S + D + L Sbjct: 359 LLFVGPPGVGKTSIAKSIARALGRKYVRVSLGGVRDESDIRGHRRTYIGAMPGRIIQGLR 418 Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152 V +DE+ ++ + E+L PA D +G V +LS Sbjct: 419 QAGSKNPVFLLDEVDKMGQSFQGDPAAALLEVLDPAQNKEFTDHYLG-------VPFDLS 471 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEAA 208 I L+ PL DR + ++ E E L + ++ R + GL+ Sbjct: 472 EVLFIGTANFPQLIPAPLMDRMELIEFTSYIEQEKLEIARRFLLPRQLEENGLSKGQVHI 531 Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 E A L+R + + A + + REI +LLR A Sbjct: 532 TEAA------------LMRLITHYTREAGVRNLEREI--GSLLRKA 563 >gi|312385829|gb|EFR30234.1| hypothetical protein AND_00302 [Anopheles darlingi] Length = 833 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 +L GPPG GKT +A+ VA E ++F S GP + G + + DR V Sbjct: 588 ILLYGPPGTGKTLIAKAVATECNLSFLSVQGPELLNMYVGQSEQNVREVFDRARTASPCV 647 Query: 109 LFIDEIHRLS 118 LF+DE+ L+ Sbjct: 648 LFLDELDSLA 657 >gi|308126598|ref|ZP_05911209.2| ClpX C4-type zinc finger domain protein [Vibrio parahaemolyticus AQ4037] gi|308108657|gb|EFO46197.1| ClpX C4-type zinc finger domain protein [Vibrio parahaemolyticus AQ4037] Length = 414 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 104 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 163 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 164 AKAERGIVYIDEIDKIS 180 >gi|308177633|ref|YP_003917039.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter arilaitensis Re117] gi|307745096|emb|CBT76068.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter arilaitensis Re117] Length = 430 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV 108 +++ +GP G GKT LAQ +A++L V F + +AG D+ +L L D DV Sbjct: 123 NIMLIGPTGCGKTYLAQSLAKKLNVPFAVADATSLTEAGYVGEDVENILLKLLQAADYDV 182 Query: 109 -------LFIDEIHRLS 118 ++IDEI ++S Sbjct: 183 KKAETGIIYIDEIDKIS 199 >gi|294678130|ref|YP_003578745.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodobacter capsulatus SB 1003] gi|294476950|gb|ADE86338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter capsulatus SB 1003] Length = 424 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 109 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 168 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 169 YNVERAQRGIVYIDEVDKIT 188 >gi|312196285|ref|YP_004016346.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c] gi|311227621|gb|ADP80476.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c] Length = 654 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Query: 47 AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALL 100 A+A A+ VL VGPPG GKT LA+ VA E V F S +G V A + L Sbjct: 214 ARAGAKGPRGVLMVGPPGTGKTLLARAVAGEAEVPFLSVTGSSFVEMFVGVGASRVRDLF 273 Query: 101 TNLEDR--DVLFIDEI 114 R ++FIDEI Sbjct: 274 AEARKRAPSIIFIDEI 289 >gi|223994525|ref|XP_002286946.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220978261|gb|EED96587.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 344 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 8/74 (10%) Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR 106 EA+ VL GPPG GKT LA+ VA E G +F S + ++ A + L R Sbjct: 77 EAVKGVLLYGPPGTGKTMLAKAVATEGGASFLSVDASSVENKWLGESEKNAKAVFTLARR 136 Query: 107 ---DVLFIDEIHRL 117 V+FIDE+ L Sbjct: 137 LAPCVIFIDEVDSL 150 >gi|195152623|ref|XP_002017236.1| GL22198 [Drosophila persimilis] gi|198453938|ref|XP_001359405.2| GA10173 [Drosophila pseudoobscura pseudoobscura] gi|194112293|gb|EDW34336.1| GL22198 [Drosophila persimilis] gi|198132580|gb|EAL28551.2| GA10173 [Drosophila pseudoobscura pseudoobscura] Length = 582 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ + + Sbjct: 339 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 398 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 399 IFIDEIDSL 407 >gi|183603154|ref|ZP_02712907.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP195] gi|183572734|gb|EDT93262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP195] Length = 402 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 106 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 165 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 166 ERAERGIIYVDEIDKIA 182 >gi|170751515|ref|YP_001757775.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium radiotolerans JCM 2831] gi|238688765|sp|B1LW29|CLPX_METRJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|170658037|gb|ACB27092.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacterium radiotolerans JCM 2831] Length = 423 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNIMLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|168049025|ref|XP_001776965.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671666|gb|EDQ58214.1| predicted protein [Physcomitrella patens subsp. patens] Length = 530 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 285 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRVLFDLARAYAPST 344 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 345 IFIDEIDSL 353 >gi|154151216|ref|YP_001404834.1| replication factor C small subunit [Candidatus Methanoregula boonei 6A8] gi|166225154|sp|A7I8Y0|RFCS_METB6 RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|153999768|gb|ABS56191.1| Replication factor C [Methanoregula boonei 6A8] Length = 322 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 10/70 (14%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP L + GQ + L ++++ L H+LF G G+GKTT A +ARE Sbjct: 9 IEKYRPAKLADIVGQDDIVERLSSYVKSGN-----LPHLLFTGSAGVGKTTAAVTLAREF 63 Query: 79 -----GVNFR 83 +NFR Sbjct: 64 FGDSWQMNFR 73 >gi|119177342|ref|XP_001240460.1| hypothetical protein CIMG_07623 [Coccidioides immitis RS] gi|303316031|ref|XP_003068020.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735 delta SOWgp] gi|240107696|gb|EER25875.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735 delta SOWgp] Length = 393 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ Q + L+ ++A+ L H+LF GPPG GKT+ +A+ L Sbjct: 43 RPKTLDDVAAQDHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 93 >gi|86148884|ref|ZP_01067135.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222] gi|218710173|ref|YP_002417794.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio splendidus LGP32] gi|254763873|sp|B7VHZ9|CLPX_VIBSL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|85833327|gb|EAQ51534.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222] gi|218323192|emb|CAV19369.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio splendidus LGP32] Length = 426 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|84387736|ref|ZP_00990752.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus 12B01] gi|84377419|gb|EAP94286.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus 12B01] Length = 426 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|325295581|ref|YP_004282095.1| ATP-dependent protease La [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066029|gb|ADY74036.1| ATP-dependent protease La [Desulfurobacterium thermolithotrophum DSM 11699] Length = 803 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 21/26 (80%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF 82 + FVGPPG+GKT+LA+ +AR LG F Sbjct: 369 ICFVGPPGVGKTSLARSIARALGRKF 394 >gi|323452125|gb|EGB08000.1| hypothetical protein AURANDRAFT_26972 [Aureococcus anophagefferens] Length = 159 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 8/76 (10%) Query: 51 AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE 104 A+ V+ GPPG GKT LA+ VA E GV F STSG V A + ++ + + Sbjct: 51 AQCPRGVILEGPPGTGKTLLARAVAGEAGVPFISTSGSEFVEMFVGVGASRIRSMFGDAK 110 Query: 105 DRD--VLFIDEIHRLS 118 ++FIDEI + Sbjct: 111 KNAPCIIFIDEIDAIG 126 >gi|323495055|ref|ZP_08100144.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio brasiliensis LMG 20546] gi|323310712|gb|EGA63887.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio brasiliensis LMG 20546] Length = 427 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|322377849|ref|ZP_08052338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. M334] gi|321281272|gb|EFX58283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. M334] Length = 410 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERTERGIIYVDEIDKIA 190 >gi|320032378|gb|EFW14331.1| DNA replication factor C subunit Rfc2 [Coccidioides posadasii str. Silveira] Length = 393 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ Q + L+ ++A+ L H+LF GPPG GKT+ +A+ L Sbjct: 43 RPKTLDDVAAQDHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 93 >gi|307703276|ref|ZP_07640221.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus oralis ATCC 35037] gi|307623142|gb|EFO02134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus oralis ATCC 35037] Length = 401 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 105 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 164 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 165 ERAERGIIYVDEIDKIA 181 >gi|306824842|ref|ZP_07458186.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433053|gb|EFM36025.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 410 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|302671435|ref|YP_003831395.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Butyrivibrio proteoclasticus B316] gi|302395908|gb|ADL34813.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Butyrivibrio proteoclasticus B316] Length = 741 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Query: 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQ 72 A + L R GQ EA S + ++ +KA + L +LFVGP G+GKT +A+ Sbjct: 440 AGLETLEERIKTRIFGQDEAVSQVVNAVKFSKAGLIEDGKPLASLLFVGPTGVGKTEIAR 499 Query: 73 VVARELGV 80 +A ELGV Sbjct: 500 TLADELGV 507 >gi|301769913|ref|XP_002920373.1| PREDICTED: spermatogenesis-associated protein 5-like [Ailuropoda melanoleuca] Length = 894 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN------LEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 391 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEAALRHPSI 450 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 451 IFIDELDALC 460 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 665 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 696 >gi|302035646|ref|YP_003795968.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus Nitrospira defluvii] gi|300603710|emb|CBK40041.1| ATP-dependent Clp protease, ATP-binding subunit clpX [Candidatus Nitrospira defluvii] Length = 418 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 31/141 (21%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +A+ L V F + +AG + + N+ Sbjct: 112 NILVIGPTGTGKTLLAQTLAKFLDVPFTLADATTLTEAGYVGEDVENIILKLLQAADYDV 171 Query: 104 --EDRDVLFIDEIHRLS------IIVEEILYPAMEDFQLDLMVG-----------EGPSA 144 +R +++IDEI ++S I ++ ++ L L+ G + P Sbjct: 172 ERAERGIVYIDEIDKISRKSDSPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRKHPHQ 231 Query: 145 RSVKINLSRFTLIAATTRVGL 165 +++N S I VGL Sbjct: 232 EFIQVNTSNILFICGGAFVGL 252 >gi|298482983|ref|ZP_07001165.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22] gi|298270955|gb|EFI12534.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22] Length = 621 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + LK I K L H LF GP G+GKTT A++ A+ + Sbjct: 12 RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66 Query: 82 FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127 + G + A N+ + D + + + +VE++ P Sbjct: 67 TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126 Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 + F L E P ++ I ATT + + R I Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238 N +ED + A G+ EA IAM++ G R A + +V F + + Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237 Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275 I +++DA LL I GFD ++T ++ +F Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295 Query: 276 -GGGPVGIETISAGLS 290 G PV + + G S Sbjct: 296 VGKDPVTLPLLEVGAS 311 >gi|296232627|ref|XP_002761659.1| PREDICTED: lon protease homolog, mitochondrial isoform 2 [Callithrix jacchus] Length = 924 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S E+ D++ + E+ G + + FI ++ R +L F GPPG+GKT++A Sbjct: 438 SDENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 497 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G V A G + L + + ++ IDE+ Sbjct: 498 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 557 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ S + E+L P LD + V ++LS+ I + Sbjct: 558 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 610 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 611 EPLRDRMEV-ISVSGYVAQEKLAIAER 636 >gi|301758022|ref|XP_002914857.1| PREDICTED: replication factor C subunit 4-like [Ailuropoda melanoleuca] gi|281350719|gb|EFB26303.1| hypothetical protein PANDA_002794 [Ailuropoda melanoleuca] Length = 363 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ ++E Q E + LK +E A L ++LF GPPG GKT+ AREL Sbjct: 44 RPKCVDEIAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 94 >gi|270006246|gb|EFA02694.1| hypothetical protein TcasGA2_TC008415 [Tribolium castaneum] Length = 758 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF S GP Sbjct: 535 VLMFGPPGCSKTMIAKALATESGLNFLSIKGP 566 >gi|269467848|gb|EEZ79591.1| DNA polymerase III, gamma/tau subunit [uncultured SUP05 cluster bacterium] Length = 528 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ +K I A A ++L H LF G G+GKTT+A++ A+ + Sbjct: 13 RPHTFSEMVGQTHT---VKTLINALDA--DSLHHAFLFTGTRGVGKTTIARIFAKSINCE 67 Query: 82 FRSTSGPV 89 +S P Sbjct: 68 AGVSSKPC 75 >gi|296141683|ref|YP_003648926.1| DNA polymerase III subunits gamma/tau [Tsukamurella paurometabola DSM 20162] gi|296029817|gb|ADG80587.1| DNA polymerase III, subunits gamma and tau [Tsukamurella paurometabola DSM 20162] Length = 737 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ L V +++ + ++H LF GP G GKT+ A+++AR L Sbjct: 8 RPATFAEVVGQEHVTEPLSVALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCE 62 Query: 82 FRSTSGPV 89 TS P Sbjct: 63 QGPTSTPC 70 >gi|284030230|ref|YP_003380161.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kribbella flavida DSM 17836] gi|283809523|gb|ADB31362.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kribbella flavida DSM 17836] Length = 431 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ D Sbjct: 117 AKSNILLIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 176 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDE+ +++ Sbjct: 177 YDVKKAETGIIYIDEVDKIA 196 >gi|227497061|ref|ZP_03927311.1| ATP-dependent metalloprotease FtsH [Actinomyces urogenitalis DSM 15434] gi|226833458|gb|EEH65841.1| ATP-dependent metalloprotease FtsH [Actinomyces urogenitalis DSM 15434] Length = 721 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 249 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSG 279 >gi|209881462|ref|XP_002142169.1| ATPase, AAA family protein [Cryptosporidium muris RN66] gi|209557775|gb|EEA07820.1| ATPase, AAA family protein [Cryptosporidium muris RN66] Length = 626 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 38/207 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------GPVIAKAGDLAALLTNLEDRD 107 +LF GPPG GKTT A+++++ + S G K + L ++ Sbjct: 404 ILFEGPPGTGKTTSARIISKVAKIPLLYVSLENIISKWYGESEQKLAQVFNLAKQFDNGC 463 Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT----------LI 157 ++FIDEI L+ + D ++ G S R + + L + LI Sbjct: 464 IIFIDEIDTLA---------SSRDNTFNMHEG---SKRILSVLLRKLDGFDTIKDKILLI 511 Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 AT R + +R I + + ++ K I Q+ AK + DE E+ S+ Sbjct: 512 CATNRRNDIDQAFINRIDSTIYFHLPDEKERKAIFQQYAK----HLNDEQLSEL---SKL 564 Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITRE 244 + +++GR +R V AE A I ++ Sbjct: 565 SNKLSGRAIRHVCLEAEREWAANILKK 591 >gi|193211748|ref|YP_001997701.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327] gi|193085225|gb|ACF10501.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327] Length = 703 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 9/109 (8%) Query: 15 EDADISLLRPRTLEEFTGQV-EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 E IS L+E G+V E LK + K + VL VGPPG GKT LA+ Sbjct: 190 EHTRISFKDVAGLDEAKGEVMEVVDFLKDPKKYTKLGGKLPKGVLLVGPPGTGKTLLAKA 249 Query: 74 VARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 VA E V F S SG V A + L +++ ++FIDEI Sbjct: 250 VAGEADVPFFSISGSDFVEMFVGVGAARVRDLFKQAKEKAPCIIFIDEI 298 >gi|220917260|ref|YP_002492564.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans 2CP-1] gi|310943116|sp|B8J992|FTSH_ANAD2 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|219955114|gb|ACL65498.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans 2CP-1] Length = 706 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 10/71 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107 VL VGPPG GKT LA+ A E GV F S SG A+ DL A T + Sbjct: 242 VLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFAQATQ-KAPC 300 Query: 108 VLFIDEIHRLS 118 ++FIDE+ L Sbjct: 301 IVFIDELDALG 311 >gi|197122472|ref|YP_002134423.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K] gi|196172321|gb|ACG73294.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K] Length = 705 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 10/71 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107 VL VGPPG GKT LA+ A E GV F S SG A+ DL A T + Sbjct: 241 VLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFAQATQ-KAPC 299 Query: 108 VLFIDEIHRLS 118 ++FIDE+ L Sbjct: 300 IVFIDELDALG 310 >gi|161506860|ref|YP_001576814.1| cell division protein [Lactobacillus helveticus DPC 4571] gi|160347849|gb|ABX26523.1| Cell division protein [Lactobacillus helveticus DPC 4571] Length = 721 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E V F S SG V A + L N + + Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|148988623|ref|ZP_01820056.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP6-BS73] gi|147925824|gb|EDK76899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP6-BS73] Length = 410 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L N+ Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 173 Query: 104 E--DRDVLFIDEIHRLS 118 E +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|23956364|ref|NP_705800.1| katanin p60 ATPase-containing subunit A-like 1 [Mus musculus] gi|60390206|sp|Q8K0T4|KATL1_MOUSE RecName: Full=Katanin p60 ATPase-containing subunit A-like 1; Short=Katanin p60 subunit A-like 1; AltName: Full=p60 katanin-like 1 gi|20987888|gb|AAH30434.1| Katanin p60 subunit A-like 1 [Mus musculus] Length = 488 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL VGPPG GKT LA+ VA E G F + S + Sbjct: 242 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 275 >gi|304437097|ref|ZP_07397060.1| cell division protein FtsH [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370048|gb|EFM23710.1| cell division protein FtsH [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 664 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F + SG Sbjct: 196 VLLFGPPGTGKTLLAKAVAGEAGVQFFTISG 226 >gi|303255354|ref|ZP_07341424.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae BS455] gi|302597722|gb|EFL64798.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae BS455] Length = 410 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L N+ Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 173 Query: 104 E--DRDVLFIDEIHRLS 118 E +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|302836203|ref|XP_002949662.1| hypothetical protein VOLCADRAFT_74350 [Volvox carteri f. nagariensis] gi|300265021|gb|EFJ49214.1| hypothetical protein VOLCADRAFT_74350 [Volvox carteri f. nagariensis] Length = 692 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ +A E GV F S SG Sbjct: 257 CLLVGPPGTGKTLLAKAIAGEAGVPFFSVSG 287 >gi|302841647|ref|XP_002952368.1| hypothetical protein VOLCADRAFT_105496 [Volvox carteri f. nagariensis] gi|300262304|gb|EFJ46511.1| hypothetical protein VOLCADRAFT_105496 [Volvox carteri f. nagariensis] Length = 1104 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVARE 77 RT ++ G EA L+ +E K A+ VL GPPG GKT LA+ VA E Sbjct: 446 RTFKDVKGCDEAKEELREVVEFLKNPGKFTRLGAKLPKGVLLTGPPGTGKTLLAKAVAGE 505 Query: 78 LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114 GV F +G V + + AL + R ++FIDEI Sbjct: 506 AGVPFFYRAGSEFEELYVGVGSRRMRALFAAAKKRSPCIVFIDEI 550 >gi|297844582|ref|XP_002890172.1| hypothetical protein ARALYDRAFT_889048 [Arabidopsis lyrata subsp. lyrata] gi|297336014|gb|EFH66431.1| hypothetical protein ARALYDRAFT_889048 [Arabidopsis lyrata subsp. lyrata] Length = 766 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 10/67 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107 +LF GPPG GKT LA +A E+GV F S + +G A N+ + Sbjct: 231 ILFHGPPGCGKTKLANAIANEVGVPFYKISATDVV-SGVSGASEENIRELFSKAYRTAPS 289 Query: 108 VLFIDEI 114 ++FIDEI Sbjct: 290 IVFIDEI 296 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 16/30 (53%), Positives = 18/30 (60%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L GPPG GKT +A+ VA E G NF G Sbjct: 524 LLYGPPGCGKTLIAKAVANEAGANFMHIKG 553 >gi|260776381|ref|ZP_05885276.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio coralliilyticus ATCC BAA-450] gi|260607604|gb|EEX33869.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio coralliilyticus ATCC BAA-450] Length = 427 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|260173527|ref|ZP_05759939.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2] gi|315921797|ref|ZP_07918037.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2] gi|313695672|gb|EFS32507.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2] Length = 621 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + LK I K L H LF GP G+GKTT A++ A+ + Sbjct: 12 RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66 Query: 82 FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127 + G + A N+ + D + + + +VE++ P Sbjct: 67 TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126 Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 + F L E P ++ I ATT + + R I Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238 N +ED + A G+ EA IAM++ G R A + +V F + + Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237 Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275 I +++DA LL I GFD ++T ++ +F Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295 Query: 276 -GGGPVGIETISAGLS 290 G PV + + G S Sbjct: 296 VGKDPVTLPLLEVGAS 311 >gi|169834164|ref|YP_001694974.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae Hungary19A-6] gi|168996666|gb|ACA37278.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae Hungary19A-6] Length = 402 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 106 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 165 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 166 ERAERGIIYVDEIDKIA 182 >gi|167629104|ref|YP_001679603.1| ATP-dependent lon protease [Heliobacterium modesticaldum Ice1] gi|167591844|gb|ABZ83592.1| ATP-dependent lon protease [Heliobacterium modesticaldum Ice1] Length = 658 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70 +VS + + +LRPR L E GQ A + +K + H+L GPPG+GKTT Sbjct: 161 SVSLARSAMEMLRPRQLNEVVGQERAVQAI-----LSKLASPYPQHILCYGPPGVGKTTA 215 Query: 71 AQV 73 A++ Sbjct: 216 ARL 218 >gi|170093437|ref|XP_001877940.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647799|gb|EDR12043.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1027 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 33/207 (15%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 + E+ +IS E+ G E S + F+ K R ++ VGPPG+GKT++ Sbjct: 473 TPENYNISHAEKVLDEDHYGLSEVKSRILEFLAVGKLRGTVQGKIICLVGPPGVGKTSIG 532 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEIH 115 + ++R LG FR + G V A G + L +E + L IDE+ Sbjct: 533 KSISRALGRQFFRFSVGGLTDVAEIKGHRRTYVGALPGKIIQALKRVETENPLVLIDEVD 592 Query: 116 RLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ + E+L P LD + V ++LSR + + + Sbjct: 593 KIGRGINGDPASALLEMLDPEQNSGFLDHYM-------DVPVDLSRVLFVCTANNLDTIP 645 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL DR + + ++ Y E+ I R Sbjct: 646 APLLDRMEV-LEVSGYVSEEKAVIASR 671 >gi|150865406|ref|XP_001384609.2| hypothetical protein PICST_45980 [Scheffersomyces stipitis CBS 6054] gi|300681245|sp|A3LUF7|LONP2_PICST RecName: Full=Lon protease homolog 2, peroxisomal gi|149386662|gb|ABN66580.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 1180 Score = 39.7 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 43/184 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100 ++ GPPG GKT+LA+ +A LG NF+ S + + + AL Sbjct: 663 IMLAGPPGTGKTSLAKSIASSLGRNFQRISLGGVKDESEIRGHRRTYVGAMPGLIIQALR 722 Query: 101 TNLEDRDVLFIDEIHRL--------------SIIVEEILYPAMEDFQLDLMVGEGPSARS 146 + V+ +DEI ++ S + E+L P +D +G Sbjct: 723 KSRSMNPVILLDEIDKVIGGSSGVNKFNGDPSAALLEVLDPEQNTSFIDHYLG------- 775 Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGL 201 ++LS+ I LT PL DR + I ++ Y+ + K ++ R K G Sbjct: 776 FPVDLSQVIFICTANEPHNLTRPLLDRLEM-IEVSAYDYNEKLIIGRKYLLPRQVKRNGF 834 Query: 202 AVTD 205 +D Sbjct: 835 PASD 838 >gi|126732555|ref|ZP_01748353.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata E-37] gi|126707001|gb|EBA06069.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata E-37] Length = 421 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189 >gi|147676386|ref|YP_001210601.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum thermopropionicum SI] gi|146272483|dbj|BAF58232.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum thermopropionicum SI] Length = 558 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV 80 RPRT E GQ LK +EA + + H +F G G GKTT A+V+A+ L Sbjct: 10 WRPRTFGEIIGQEHITRTLKNAVEAGR-----VGHAYIFCGARGTGKTTAAKVLAKALNC 64 Query: 81 NFRSTSGPV 89 R + P Sbjct: 65 TGREGAEPC 73 >gi|86157920|ref|YP_464705.1| FtsH peptidase [Anaeromyxobacter dehalogenans 2CP-C] gi|197122777|ref|YP_002134728.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K] gi|85774431|gb|ABC81268.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|196172626|gb|ACG73599.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K] Length = 635 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL +GPPG GKT LA+ VA E GV F S SG + G A+ + +L ++ + Sbjct: 191 VLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCI 250 Query: 109 LFIDEI 114 +FIDEI Sbjct: 251 IFIDEI 256 >gi|78211619|ref|YP_380398.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. CC9605] gi|123579027|sp|Q3ANI9|CLPX_SYNSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|78196078|gb|ABB33843.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. CC9605] Length = 449 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNLEDRDVLFI 111 ++L +GP G GKT LAQ +A L V F + +AG D+ +L L + + + Sbjct: 137 NILLIGPTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKAEMDV 196 Query: 112 DEIHRLSIIVEEI 124 D+ R I ++EI Sbjct: 197 DQAQRGIIYIDEI 209 >gi|89070384|ref|ZP_01157691.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus HTCC2516] gi|89044031|gb|EAR50206.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus HTCC2516] Length = 422 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 109 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 168 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 169 YNVERAQRGIVYIDEVDKIT 188 >gi|134301131|ref|YP_001114627.1| endopeptidase La [Desulfotomaculum reducens MI-1] gi|134053831|gb|ABO51802.1| Endopeptidase La [Desulfotomaculum reducens MI-1] Length = 648 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73 + +LRP + EE GQ A L AK + H++ GPPG+GKTT A++ Sbjct: 169 MEILRPESFEEVIGQERAVKAL-----LAKLASPFPQHIILYGPPGVGKTTAARL 218 >gi|119717697|ref|YP_924662.1| ATP-dependent protease ATP-binding subunit ClpX [Nocardioides sp. JS614] gi|166214794|sp|A1SME0|CLPX_NOCSJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|119538358|gb|ABL82975.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardioides sp. JS614] Length = 426 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105 A ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L D Sbjct: 116 AKSNILVIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 175 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDEI +++ Sbjct: 176 YDVKKAETGIIYIDEIDKVA 195 >gi|325847170|ref|ZP_08169969.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480950|gb|EGC83996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 399 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 30/134 (22%) Query: 15 EDADISLLRPRTLEEFTGQV-----EACSNLKVFIEAAKARAEA-----------LDHVL 58 ++ DI L +PR ++E+ Q A L V + R + ++L Sbjct: 50 KNMDIELAKPREIKEYLDQYVIQQEMAKKTLSVSVYNHYKRINSNYDKDDGVELQKSNIL 109 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD---- 107 +GP G GKT LAQ +A++L V F + +AG + + N+ D D Sbjct: 110 MLGPTGSGKTLLAQTLAKKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIELA 169 Query: 108 ---VLFIDEIHRLS 118 +++IDEI +++ Sbjct: 170 QTGIIYIDEIDKIT 183 >gi|302687963|ref|XP_003033661.1| hypothetical protein SCHCODRAFT_75067 [Schizophyllum commune H4-8] gi|300107356|gb|EFI98758.1| hypothetical protein SCHCODRAFT_75067 [Schizophyllum commune H4-8] Length = 597 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT LA+ A E GVNF + GP Sbjct: 371 VLLYGPPGCSKTVLARACACESGVNFVAVKGP 402 >gi|294795209|ref|ZP_06760343.1| cell division protein FtsH [Veillonella sp. 3_1_44] gi|294454001|gb|EFG22376.1| cell division protein FtsH [Veillonella sp. 3_1_44] Length = 642 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL GPPG GKT LA+ VA E GV F + SG V A + L T + + Sbjct: 190 VLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFTQAKKNAPCI 249 Query: 109 LFIDEI 114 +FIDEI Sbjct: 250 IFIDEI 255 >gi|256828015|ref|YP_003156743.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfomicrobium baculatum DSM 4028] gi|256577191|gb|ACU88327.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfomicrobium baculatum DSM 4028] Length = 416 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L NL Sbjct: 112 NILLIGPTGSGKTLLAQTLARILKVPFAIADATTLTEAGYVGEDVENILVQLVQNADYNL 171 Query: 104 ED--RDVLFIDEIHRLS 118 E + ++++DEI ++S Sbjct: 172 ETAAKGIIYVDEIDKIS 188 >gi|254512525|ref|ZP_05124592.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacteraceae bacterium KLH11] gi|221536236|gb|EEE39224.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacteraceae bacterium KLH11] Length = 421 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 111 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 170 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 171 YNVERAQRGIVYIDEVDKIT 190 >gi|195568356|ref|XP_002102182.1| GD19637 [Drosophila simulans] gi|194198109|gb|EDX11685.1| GD19637 [Drosophila simulans] Length = 572 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ + + Sbjct: 329 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 388 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 389 IFIDEIDSL 397 >gi|172041381|ref|YP_001801095.1| cell division protein [Corynebacterium urealyticum DSM 7109] gi|171852685|emb|CAQ05661.1| cell division protein [Corynebacterium urealyticum DSM 7109] Length = 837 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL GPPG GKT LA+ VA E GV F S SG Sbjct: 207 VLLYGPPGTGKTLLARAVAGESGVPFYSISG 237 >gi|158423233|ref|YP_001524525.1| ATP-dependent protease ATP-binding subunit ClpX [Azorhizobium caulinodans ORS 571] gi|172047857|sp|A8HYF4|CLPX_AZOC5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|158330122|dbj|BAF87607.1| ATP-dependent Clp protease ATP-binding subunit [Azorhizobium caulinodans ORS 571] Length = 422 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNIMLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|148272647|ref|YP_001222208.1| ATP-dependent protease ATP-binding subunit ClpX [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166214771|sp|A5CR08|CLPX_CLAM3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|147830577|emb|CAN01512.1| ATP-dependent protease, ATP-binding subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 426 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105 A ++L +GP G GKT LAQ +A+ L V F + +AG + + N+ D Sbjct: 117 AKSNILLIGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 176 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDE+ +++ Sbjct: 177 YDVKRAETGIIYIDEVDKIA 196 >gi|118474218|ref|YP_892493.1| putative cell division protein FtsH-like protein [Campylobacter fetus subsp. fetus 82-40] gi|118413444|gb|ABK81864.1| putative Cell division protein FtsH homolog [Campylobacter fetus subsp. fetus 82-40] Length = 643 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNL--EDRDV 108 VL VGPPG GKT LA+ VA E V F S SG V A + L N E + Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAI 268 Query: 109 LFIDEI 114 +FIDEI Sbjct: 269 VFIDEI 274 >gi|126701185|ref|YP_001090082.1| cell division protein [Clostridium difficile 630] gi|260685079|ref|YP_003216364.1| cell division protein [Clostridium difficile CD196] gi|260688737|ref|YP_003219871.1| cell division protein [Clostridium difficile R20291] gi|296452819|ref|ZP_06894506.1| M41 family endopeptidase FtsH [Clostridium difficile NAP08] gi|296879929|ref|ZP_06903901.1| M41 family endopeptidase FtsH [Clostridium difficile NAP07] gi|115252622|emb|CAJ70465.1| Cell division protease FtsH2 [Clostridium difficile] gi|260211242|emb|CBA66769.1| cell division protein [Clostridium difficile CD196] gi|260214754|emb|CBE07450.1| cell division protein [Clostridium difficile R20291] gi|296258367|gb|EFH05275.1| M41 family endopeptidase FtsH [Clostridium difficile NAP08] gi|296429043|gb|EFH14918.1| M41 family endopeptidase FtsH [Clostridium difficile NAP07] Length = 664 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 V+ N K +IE A +L VGPPG GKT L++ VA E GV F S SG Sbjct: 187 VDFLKNPKKYIELG---ARIPKGMLMVGPPGTGKTYLSRAVAGEAGVPFFSISG 237 >gi|86158199|ref|YP_464984.1| FtsH-2 peptidase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774710|gb|ABC81547.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 702 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 10/71 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107 VL VGPPG GKT LA+ A E GV F S SG A+ DL A T + Sbjct: 241 VLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFAQATQ-KAPC 299 Query: 108 VLFIDEIHRLS 118 ++FIDE+ L Sbjct: 300 IVFIDELDALG 310 >gi|78485522|ref|YP_391447.1| ATP-dependent protease ATP-binding subunit [Thiomicrospira crunogena XCL-2] gi|78363808|gb|ABB41773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thiomicrospira crunogena XCL-2] Length = 416 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +++ L Sbjct: 108 NILLIGPTGSGKTLLAQTLARLLDVPFAIADATTLTEAGYVGEDVESIVLKLLQRCDNDA 167 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 168 EKAERGIIYIDEIDKIT 184 >gi|78223078|ref|YP_384825.1| Lon-A peptidase [Geobacter metallireducens GS-15] gi|78194333|gb|ABB32100.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16 [Geobacter metallireducens GS-15] Length = 805 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 49/219 (22%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS-----------GPVIAKAGDL-AALLTNLE 104 + VGPPG+GKT+LA+ +A G F S G G + ++ NL+ Sbjct: 359 LCLVGPPGVGKTSLARSIATATGRKFVKMSLGGMRDEAEIRGHRRTYVGAMPGKIIQNLK 418 Query: 105 ----DRDVLFIDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 + V +DE+ ++S + E+L P D + V+ +LS Sbjct: 419 KAGSNNPVFLLDELDKMSSDFRGDPASAMLEVLDPEQNAHFSDHFL-------DVEYDLS 471 Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAVTDEA 207 R IA + + PL DR + IRL+ Y E E L + +V++ + GLA+ Sbjct: 472 RVMFIATANSIHGIPRPLLDRLEV-IRLDGYTEHEKLAIAERYLVKKQMEANGLALE--- 527 Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 +++ S+ +L +R ++ A + + REIA Sbjct: 528 --RVSISSKA-------ILDMIRFYSREAGVRNLEREIA 557 >gi|332200133|gb|EGJ14206.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA47368] Length = 401 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 105 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 164 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 165 ERAERGIIYVDEIDKIA 181 >gi|328954114|ref|YP_004371448.1| DNA polymerase III, subunits gamma and tau [Desulfobacca acetoxidans DSM 11109] gi|328454438|gb|AEB10267.1| DNA polymerase III, subunits gamma and tau [Desulfobacca acetoxidans DSM 11109] Length = 546 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 6/90 (6%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ +E GQ LK +E+ + A A LF GP G+GKT++A+++A+ L N Sbjct: 11 RPQNFDEVVGQEHITRTLKNALESGRV-AHAF---LFSGPRGVGKTSIARILAKAL--NC 64 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 P +T DVL ID Sbjct: 65 AEGPAPTPCNRCQSCVEITQGHSLDVLEID 94 >gi|327268864|ref|XP_003219215.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like [Anolis carolinensis] Length = 489 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL VGPPG GKT LA+ VA E G F + S + Sbjct: 243 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 276 >gi|326494184|dbj|BAJ90361.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 594 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL +GPPG GKT LA+ VA E GV F + SG Sbjct: 140 VLLMGPPGTGKTMLARAVAGEAGVPFCACSG 170 >gi|319778292|ref|YP_004129205.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Taylorella equigenitalis MCE9] gi|317108316|gb|ADU91062.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Taylorella equigenitalis MCE9] Length = 409 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104 ++L +GP G GKT LAQ +A++L V F + +AG + LL N + Sbjct: 113 NILLIGPTGSGKTLLAQTIAKQLDVPFAMADATTLTEAGYVGEDVEHIIQKLLQNCDFDI 172 Query: 105 ---DRDVLFIDEIHRLS 118 + +++IDEI +++ Sbjct: 173 EKAQQAIIYIDEIDKIA 189 >gi|297745145|emb|CBI38984.3| unnamed protein product [Vitis vinifera] Length = 236 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELG-----VNFRS--TSGPVIAKAGDLAALLTNLEDR--D 107 +L GPPGLGKTTLA V A+ G +N +S + AK D+ + + + D + Sbjct: 28 LLLCGPPGLGKTTLAHVAAKHCGYRVVEINASDDRSSSTIEAKILDVVQMNSVMADSKPN 87 Query: 108 VLFIDEI 114 L IDEI Sbjct: 88 CLVIDEI 94 >gi|302525855|ref|ZP_07278197.1| shikimate kinase [Streptomyces sp. AA4] gi|302434750|gb|EFL06566.1| shikimate kinase [Streptomyces sp. AA4] Length = 174 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 26/37 (70%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 + +GPPG GK+T+ ++A LGV FR T ++A+AG Sbjct: 6 VVIGPPGSGKSTVGPLLAAALGVTFRDTDDDIVARAG 42 >gi|269797567|ref|YP_003311467.1| ATP-dependent metalloprotease FtsH [Veillonella parvula DSM 2008] gi|310946772|sp|D1BLD0|FTSH_VEIPT RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|269094196|gb|ACZ24187.1| ATP-dependent metalloprotease FtsH [Veillonella parvula DSM 2008] Length = 642 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL GPPG GKT LA+ VA E GV F + SG V A + L T + + Sbjct: 190 VLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFTQAKKNAPCI 249 Query: 109 LFIDEI 114 +FIDEI Sbjct: 250 IFIDEI 255 >gi|224010104|ref|XP_002294010.1| peroxisomal biogenesis factor 6, peroxisomal assembly factor w, Paf2, pex6-like protein [Thalassiosira pseudonana CCMP1335] gi|220970682|gb|EED89019.1| peroxisomal biogenesis factor 6, peroxisomal assembly factor w, Paf2, pex6-like protein [Thalassiosira pseudonana CCMP1335] Length = 303 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR--DVLFID 112 +L GPPG GKT +A+ VA E G+ F S GP + + G+ A + + + VLF D Sbjct: 41 ILLFGPPGTGKTLVAKAVAAECGLPFLSIKGPELLGSYVGESEANVRAVFEAAPSVLFFD 100 Query: 113 EIHRLS 118 E+ L+ Sbjct: 101 ELDSLA 106 >gi|209876712|ref|XP_002139798.1| replication factor C subunit protein [Cryptosporidium muris RN66] gi|209555404|gb|EEA05449.1| replication factor C subunit protein, putative [Cryptosporidium muris RN66] Length = 845 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 5/36 (13%) Query: 44 IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 IE ARA VL GPPG+GKTT A +VA+E G Sbjct: 319 IENINARA-----VLLSGPPGIGKTTTANLVAKECG 349 >gi|194746625|ref|XP_001955777.1| GF16069 [Drosophila ananassae] gi|190628814|gb|EDV44338.1| GF16069 [Drosophila ananassae] Length = 578 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ + + Sbjct: 335 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 394 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 395 IFIDEIDSL 403 >gi|220917560|ref|YP_002492864.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans 2CP-1] gi|219955414|gb|ACL65798.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans 2CP-1] Length = 635 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 VL +GPPG GKT LA+ VA E GV F S SG + G A+ + +L ++ + Sbjct: 191 VLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCI 250 Query: 109 LFIDEI 114 +FIDEI Sbjct: 251 IFIDEI 256 >gi|156120691|ref|NP_001095492.1| paraplegin [Bos taurus] gi|154757434|gb|AAI51633.1| SPG7 protein [Bos taurus] gi|296477959|gb|DAA20074.1| spastic paraplegia 7 [Bos taurus] Length = 779 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 34/191 (17%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + ++ G EA +K F++ K+ A+ L +GPPG GKT LA+ VA E Sbjct: 307 SFKDVAGMHEAKLEVKEFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 366 Query: 79 GVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI----HRLSIIVEEILY 126 V F + +GP + A + +L R +++IDEI + S V Sbjct: 367 QVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTAVSGFSN 426 Query: 127 PAMEDFQLDLMV---GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 E L+V G G + + ++AAT R +L N L P RL+ + Sbjct: 427 TEEEQTLNQLLVEMDGMGTTDHVI--------VLAATNRADILDNALLR----PGRLDRH 474 Query: 184 EIEDLKTIVQR 194 DL T+ +R Sbjct: 475 VFIDLPTLQER 485 >gi|153831438|ref|ZP_01984105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae 623-39] gi|148873080|gb|EDL71215.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae 623-39] Length = 391 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 81 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 140 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 141 AKAERGIVYIDEIDKIS 157 >gi|145592779|ref|YP_001157076.1| DNA polymerase III, subunits gamma and tau [Salinispora tropica CNB-440] gi|145302116|gb|ABP52698.1| DNA polymerase III, subunits gamma and tau [Salinispora tropica CNB-440] Length = 808 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 6/91 (6%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPRT E GQ L + + L+H LF GP G GKT+ A+++AR L Sbjct: 10 RPRTFAEVIGQEHVTEPLSQALRGGR-----LNHAYLFSGPRGCGKTSSARILARSLNCE 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 T P A A DV+ ID Sbjct: 65 HGPTPEPCGTCASCRALATDGAGSIDVIEID 95 >gi|134099316|ref|YP_001104977.1| ATPase central domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291007297|ref|ZP_06565270.1| ATPase central domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|133911939|emb|CAM02052.1| AAA ATPase, central domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 424 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------RSTSGPVIAKAGDLAALLTNLEDRD--V 108 ++ GPPG GKT+ A+ +A L F R A L A+ LED D V Sbjct: 198 IVLFGPPGTGKTSFAKAIASRLNWPFVELFPSRLAGSSPDGLAASLRAVFAELEDLDDLV 257 Query: 109 LFIDEIHRLS 118 LFIDE+ ++ Sbjct: 258 LFIDEVEEIA 267 >gi|84489225|ref|YP_447457.1| replication factor C small subunit [Methanosphaera stadtmanae DSM 3091] gi|110287813|sp|Q2NH89|RFCS_METST RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit gi|84372544|gb|ABC56814.1| RfcS [Methanosphaera stadtmanae DSM 3091] Length = 321 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+TL++ GQ + LK ++E ++L +++F G G+GKTT A +A+ L Sbjct: 10 RPQTLDDVVGQEQIVGRLKRYVEE-----KSLPNIMFTGFAGVGKTTCALALAKSL 60 >gi|59801072|ref|YP_207784.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae FA 1090] gi|293398934|ref|ZP_06643099.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria gonorrhoeae F62] gi|75356149|sp|Q5F8W5|CLPX_NEIG1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|59717967|gb|AAW89372.1| putative ATP-dependent Clp protease ATP-binding subunit [Neisseria gonorrhoeae FA 1090] gi|291610348|gb|EFF39458.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria gonorrhoeae F62] Length = 414 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV 108 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L D DV Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 109 -------LFIDEIHRLS 118 ++IDEI ++S Sbjct: 174 EKARHGIVYIDEIDKIS 190 >gi|78357261|ref|YP_388710.1| Lon-A peptidase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219666|gb|ABB39015.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 819 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 103/258 (39%), Gaps = 69/258 (26%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 + VGPPG+GKT+LA+ VA G F R + G V +A G + L Sbjct: 365 LCLVGPPGVGKTSLARSVATATGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKILQSLK 424 Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYPAME----DFQLDLMVGEGPSARSVK 148 ++ + LF +DEI ++S + E+L P D LDL Sbjct: 425 RVKFNNPLFCLDEIDKMSTDFRGDPSSALLEVLDPEQNGTFGDHYLDL-----------D 473 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198 +LS+ I + + PLQDR I IRL Y E E K I Q G K Sbjct: 474 YDLSQIFFITTANSLHSIPLPLQDRMEI-IRLPGYLETEKRRIARDFLLPKQIEQHGLKP 532 Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258 + ++D A +I +R + A + + REIA + A+ + Sbjct: 533 ENVRLSDNALLDI-----------------IRSYTREAGVRNLEREIA-TICRKSAMQLV 574 Query: 259 GFDQLDLRYLTMIARNFG 276 D +D R +T+ +N G Sbjct: 575 EKDDMD-RAVTVSRQNLG 591 >gi|15643889|ref|NP_228938.1| moxR protein, putative [Thermotoga maritima MSB8] gi|4981679|gb|AAD36208.1|AE001771_1 moxR protein, putative [Thermotoga maritima MSB8] Length = 305 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 28/158 (17%) Query: 44 IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL 103 IE A A HVL PG+GKT LA+ +A LGV+FR DL L + Sbjct: 20 IEVVVAALLAKGHVLMEDVPGVGKTMLARALALSLGVDFRRVQFTPDLLPTDLTGLY--I 77 Query: 104 EDR--------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149 DR DVL DEI+R + + L AM + Q+ + +G + R + Sbjct: 78 YDRKKEDFVFKKGPVFTDVLLADEINRATPRTQSALLEAMAEGQVTV---DGVTHRLSE- 133 Query: 150 NLSRFTLIAATTRVGLL-TNPLQ----DRFGIPIRLNF 182 RF +IA + T PL DRF I +++ + Sbjct: 134 ---RFFVIATQNPIEYEGTFPLPEAQLDRFMICVKMGY 168 >gi|254245033|ref|ZP_04938355.1| hypothetical protein PA2G_05917 [Pseudomonas aeruginosa 2192] gi|126198411|gb|EAZ62474.1| hypothetical protein PA2G_05917 [Pseudomonas aeruginosa 2192] Length = 799 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 VL VGPPG+GKT++ + +A LG F R + G + +A G L L Sbjct: 379 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 438 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 +E + V+ +DEI +L + E L P D LDL + Sbjct: 439 EVEVMNPVIMLDEIDKLGASYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 487 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++LS+ + + + PL DR + IRL+ Y E+ I +R Sbjct: 488 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYISEEKLAIAKR 532 >gi|327389757|gb|EGE88102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA04375] Length = 401 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 105 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 164 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 165 ERAERGIIYVDEIDKIA 181 >gi|329116172|ref|ZP_08244889.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis NCFD 2020] gi|326906577|gb|EGE53491.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis NCFD 2020] Length = 558 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 R +T +E GQ + LK +E+ K + H LF GP G GKT+ A++ A+ + Sbjct: 10 RSQTFDEMVGQSVISTTLKQAVESKK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 Query: 82 FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112 + P D+ +TN DV+ ID Sbjct: 65 NQVNGEP--CNNCDICHDITNGSLEDVIEID 93 >gi|315638250|ref|ZP_07893432.1| cell division protein (ftsH) [Campylobacter upsaliensis JV21] gi|315481786|gb|EFU72408.1| cell division protein (ftsH) [Campylobacter upsaliensis JV21] Length = 530 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL +GPPG+GKT +A+ VA E GV F SG + G A + L R + Sbjct: 181 VLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEIYVGMGAKRVRELFSRAKMMAPSI 240 Query: 109 LFIDEI 114 +FIDEI Sbjct: 241 IFIDEI 246 >gi|315221693|ref|ZP_07863609.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus anginosus F0211] gi|315189180|gb|EFU22879.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus anginosus F0211] Length = 410 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|308497384|ref|XP_003110879.1| CRE-YMEL-1 protein [Caenorhabditis remanei] gi|308242759|gb|EFO86711.1| CRE-YMEL-1 protein [Caenorhabditis remanei] Length = 735 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 9/114 (7%) Query: 10 RNVSQEDADISLLRPRTLEEFTGQVEACSN-LKVFIEAAKARAEALDHVLFVGPPGLGKT 68 + V+ ED ++ R ++E +VE + LK + ++ VL VGPPG GKT Sbjct: 232 QEVNPEDVQVTFDDVRGMDEAKLEVEEIVDYLKDPEKYSRLGGRLPKGVLLVGPPGTGKT 291 Query: 69 TLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 LA+ +A E V F TSG + G A + +L D+ ++FIDEI Sbjct: 292 LLARAIAGEAQVPFFHTSGSEFDEVLVGQGARRVRDLFDKAKARAPCIIFIDEI 345 >gi|307704381|ref|ZP_07641296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis SK597] gi|307708344|ref|ZP_07644811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis NCTC 12261] gi|307615790|gb|EFN94996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis NCTC 12261] gi|307622066|gb|EFO01088.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis SK597] Length = 401 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 105 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 164 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 165 ERAERGIIYVDEIDKIA 181 >gi|301623590|ref|XP_002941102.1| PREDICTED: spermatogenesis-associated protein 5-like [Xenopus (Silurana) tropicalis] Length = 792 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG KT +A+ +A E G+NF + GP + G+ + + + + Sbjct: 565 VLLYGPPGCSKTMIAKALANESGLNFLAVKGPELMNKYVGESERAVREIFHKARAVAPSI 624 Query: 109 LFIDEIHRLSI 119 LF DEI L+I Sbjct: 625 LFFDEIDALAI 635 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 VL GPPG GKT +A+ +A E+G + +GP I Sbjct: 291 VLLYGPPGTGKTLIARAIANEVGAHVTVINGPEI 324 >gi|300120053|emb|CBK19607.2| unnamed protein product [Blastocystis hominis] Length = 508 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ V+ E NF S GP Sbjct: 273 VLLYGPPGCGKTLLAKAVSNESRANFISIKGP 304 >gi|255322312|ref|ZP_05363458.1| Cell division protease FtsH homolog [Campylobacter showae RM3277] gi|255300685|gb|EET79956.1| Cell division protease FtsH homolog [Campylobacter showae RM3277] Length = 555 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG+GKT +A+ VA E GV F SG Sbjct: 192 VLMVGPPGVGKTLVAKAVAGEAGVPFFYQSG 222 >gi|255693690|ref|ZP_05417365.1| putative methanol dehydrogenase regulatory protein [Bacteroides finegoldii DSM 17565] gi|260620507|gb|EEX43378.1| putative methanol dehydrogenase regulatory protein [Bacteroides finegoldii DSM 17565] Length = 324 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 24/156 (15%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106 HVL G PG+ KT LA++ AR + +F R P + + L + N++ Sbjct: 48 HVLIEGVPGVAKTLLARLTARLIDADFSRIQFTPDLMPSDVLGTTVFNMKTNGFDFHQGP 107 Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 D++ +DEI+R + L+ ME+ Q+ + +G + R ++ +T++A V Sbjct: 108 IFADIVLVDEINRAPAKTQAALFEVMEERQVSI---DGTTHRMGEL----YTILATQNPV 160 Query: 164 ---GLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQR 194 G P DRF + I +++ +E+ I++R Sbjct: 161 EQEGTYKLPEAQLDRFLMKITMDYPSLEEEVNILER 196 >gi|209877196|ref|XP_002140040.1| replication factor C, subunit 4 [Cryptosporidium muris RN66] gi|209555646|gb|EEA05691.1| replication factor C, subunit 4, putative [Cryptosporidium muris RN66] Length = 335 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81 RPR + + Q E LK +E + H+LF GPPG GKT+ + REL N Sbjct: 15 RPRQIADIYHQTEVVKMLKNVLEFGN-----MPHLLFYGPPGTGKTSAILALCRELFGND 69 Query: 82 -FRS 84 FR+ Sbjct: 70 EFRN 73 >gi|194222681|ref|XP_001498117.2| PREDICTED: similar to Replication factor C subunit 4 (Replication factor C 37 kDa subunit) (RF-C 37 kDa subunit) (RFC37) (Activator 1 37 kDa subunit) (A1 37 kDa subunit) [Equus caballus] Length = 364 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ ++E Q E + LK +E A L ++LF GPPG GKT+ AREL Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95 >gi|182684524|ref|YP_001836271.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae CGSP14] gi|221232330|ref|YP_002511483.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus pneumoniae ATCC 700669] gi|238691178|sp|B2IR87|CLPX_STRPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763866|sp|B8ZLT1|CLPX_STRPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|182629858|gb|ACB90806.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae CGSP14] gi|220674791|emb|CAR69364.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus pneumoniae ATCC 700669] Length = 410 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|149200008|ref|ZP_01877034.1| probable cell division protein FtsH [Lentisphaera araneosa HTCC2155] gi|149136881|gb|EDM25308.1| probable cell division protein FtsH [Lentisphaera araneosa HTCC2155] Length = 693 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108 L VGPPG GKT LA+ +A E GV F S SG + G A+ + +L ++ + Sbjct: 221 CLMVGPPGTGKTLLARAIAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFEQAKKHQPCI 280 Query: 109 LFIDEI 114 LFIDEI Sbjct: 281 LFIDEI 286 >gi|91081693|ref|XP_970788.1| PREDICTED: similar to spermatogenesis associated 5 [Tribolium castaneum] Length = 696 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF S GP Sbjct: 473 VLMFGPPGCSKTMIAKALATESGLNFLSIKGP 504 >gi|61651808|ref|NP_001013344.1| replication factor C subunit 2 [Danio rerio] gi|60477744|gb|AAH90779.1| Zgc:110810 [Danio rerio] gi|182890088|gb|AAI64018.1| Zgc:110810 protein [Danio rerio] Length = 349 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP L E G E S L+VF AR + +++ GPPG GKTT +AR L Sbjct: 34 VEKYRPLKLNEIVGNEETVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCLARAL 88 >gi|332073906|gb|EGI84384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA41301] Length = 410 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|329768246|ref|ZP_08259747.1| hypothetical protein HMPREF0428_01444 [Gemella haemolysans M341] gi|328837445|gb|EGF87074.1| hypothetical protein HMPREF0428_01444 [Gemella haemolysans M341] Length = 668 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 42/222 (18%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL GPPG GKT LA+ VA E V F S SG V A + L E + Sbjct: 204 VLLEGPPGTGKTLLARAVAGEAKVPFFSISGSDFVEMFVGVGASRVRDLFKEAEKNAPCI 263 Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LI 157 +FIDEI + + VG G R +N + F +I Sbjct: 264 IFIDEIDAVG-------------RKRGSGVGGGNDEREQTLNQLLVEMDGFDGEKGIIVI 310 Query: 158 AATTRVGLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 AAT R +L N L+ RF I+++ +++ + I++ AK LA E+ + Sbjct: 311 AATNRADVLDNALRRPGRFDRQIKVSTPDVKGREAILKVHAKNKPLA----KGVELRSLA 366 Query: 216 RGTPRIAGRLLRRVRDFAEVAHAK----TITREIADAALLRL 253 TP +G L + + A + A+ +I +E D A+ R+ Sbjct: 367 EKTPGFSGADLANILNEAALLAARENKSSIDKEDLDEAMDRV 408 >gi|313903079|ref|ZP_07836473.1| Sigma 54 interacting domain protein [Thermaerobacter subterraneus DSM 13965] gi|313466581|gb|EFR62101.1| Sigma 54 interacting domain protein [Thermaerobacter subterraneus DSM 13965] Length = 563 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ E+ GQ E L+ + + HVL GPPG+GKT A++V E N Sbjct: 64 RPQRFEDIVGQEEGLRALRAALCGPNPQ-----HVLIYGPPGVGKTAAARLVLEEAKRNP 118 Query: 83 RSTSGP 88 RS P Sbjct: 119 RSPFRP 124 >gi|290969236|ref|ZP_06560761.1| ATP-dependent metallopeptidase HflB [Megasphaera genomosp. type_1 str. 28L] gi|290780742|gb|EFD93345.1| ATP-dependent metallopeptidase HflB [Megasphaera genomosp. type_1 str. 28L] Length = 646 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78 + ++ G+ EA L +E + + D VL GPPG GKT LA+ VA E Sbjct: 153 SFKDVAGEDEAKEELSELVEFLRNPGKYNDIGAKIPKGVLLFGPPGTGKTLLARAVAGEA 212 Query: 79 GVNFRSTSG 87 GV F S SG Sbjct: 213 GVPFFSISG 221 >gi|288958757|ref|YP_003449098.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp. B510] gi|288911065|dbj|BAI72554.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp. B510] Length = 420 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189 >gi|282850015|ref|ZP_06259397.1| ATP-dependent metallopeptidase HflB [Veillonella parvula ATCC 17745] gi|294793390|ref|ZP_06758535.1| cell division protein FtsH [Veillonella sp. 6_1_27] gi|282580204|gb|EFB85605.1| ATP-dependent metallopeptidase HflB [Veillonella parvula ATCC 17745] gi|294455821|gb|EFG24186.1| cell division protein FtsH [Veillonella sp. 6_1_27] Length = 642 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL GPPG GKT LA+ VA E GV F + SG V A + L T + + Sbjct: 190 VLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFTQAKKNAPCI 249 Query: 109 LFIDEI 114 +FIDEI Sbjct: 250 IFIDEI 255 >gi|270293656|ref|ZP_06199858.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275123|gb|EFA20983.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 746 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%) Query: 14 QEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGK 67 +ED +L L R GQ EA + ++ +KA + L +LFVGP G+GK Sbjct: 440 KEDDTTALESLHERISSRIYGQEEAVRQVVEAVQMSKAGLLDENKPLASLLFVGPTGVGK 499 Query: 68 TTLAQVVARELGV 80 T +A+V+A ELG+ Sbjct: 500 TEVAKVLAAELGI 512 >gi|297741990|emb|CBI33777.3| unnamed protein product [Vitis vinifera] Length = 235 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 9/70 (12%) Query: 54 LDHVLFVGPPGLGKTTLAQVVARELG-----VNFRS--TSGPVIAKAGDLAALLTNLEDR 106 L +L GPPGLGKTTLA V A+ G +N +S + AK D+ + + + D Sbjct: 28 LQILLLCGPPGLGKTTLAHVAAKHCGYRVVEINASDDRSSSTIEAKILDVVQMNSVMADS 87 Query: 107 --DVLFIDEI 114 + L IDEI Sbjct: 88 KPNCLVIDEI 97 >gi|262404274|ref|ZP_06080829.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp. RC586] gi|262349306|gb|EEY98444.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp. RC586] Length = 426 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|298230526|ref|ZP_06964207.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255218|ref|ZP_06978804.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503307|ref|YP_003725247.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae TCH8431/19A] gi|298238902|gb|ADI70033.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae TCH8431/19A] Length = 410 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|254488366|ref|ZP_05101571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter sp. GAI101] gi|214045235|gb|EEB85873.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter sp. GAI101] Length = 421 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSE 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189 >gi|213513069|ref|NP_001133845.1| katanin p60 ATPase-containing subunit A1 [Salmo salar] gi|238690595|sp|B5X3X5|KTNA1_SALSA RecName: Full=Katanin p60 ATPase-containing subunit A1; Short=Katanin p60 subunit A1; AltName: Full=p60 katanin gi|209155548|gb|ACI34006.1| Katanin p60 ATPase-containing subunit [Salmo salar] Length = 486 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 40/232 (17%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E F + S + G+ L + Sbjct: 240 VLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMARFYAPTT 299 Query: 109 LFIDEIHRLSI---IVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVG 164 +FIDEI + EE + A + +L+V +G S + S+ ++ A T Sbjct: 300 IFIDEIDSMCSRRGTSEE--HEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFP 357 Query: 165 L-----LTNPLQDRFGIP----------IRLNFYEIE-----DLKTIVQRGAKLTGLAVT 204 L L+ R IP +R+N E+E D+ I ++ +G +T Sbjct: 358 WDIDEALRRRLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADIT 417 Query: 205 D--EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 + A +AMR RI G +R+ + T E +++L +++ Sbjct: 418 NVCRDASLMAMRR----RIEGLTPEEIRNISRAEMHMPTTMEDFESSLKKVS 465 >gi|195453410|ref|XP_002073776.1| GK14289 [Drosophila willistoni] gi|194169861|gb|EDW84762.1| GK14289 [Drosophila willistoni] Length = 574 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ + + Sbjct: 331 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 390 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 391 IFIDEIDSL 399 >gi|195343587|ref|XP_002038377.1| GM10656 [Drosophila sechellia] gi|194133398|gb|EDW54914.1| GM10656 [Drosophila sechellia] Length = 572 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ + + Sbjct: 329 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 388 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 389 IFIDEIDSL 397 >gi|160886339|ref|ZP_02067342.1| hypothetical protein BACOVA_04349 [Bacteroides ovatus ATCC 8483] gi|237723209|ref|ZP_04553690.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4] gi|156108224|gb|EDO09969.1| hypothetical protein BACOVA_04349 [Bacteroides ovatus ATCC 8483] gi|229447731|gb|EEO53522.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4] Length = 621 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + LK I K L H LF GP G+GKTT A++ A+ + Sbjct: 12 RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66 Query: 82 FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127 + G + A N+ + D + + + +VE++ P Sbjct: 67 TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126 Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 + F L E P ++ I ATT + + R I Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238 N +ED + A G+ EA IAM++ G R A + +V F + + Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237 Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275 I +++DA LL I GFD ++T ++ +F Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295 Query: 276 -GGGPVGIETISAGLS 290 G PV + + G S Sbjct: 296 VGKDPVTLPLLEVGAS 311 >gi|148993405|ref|ZP_01822922.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP9-BS68] gi|194397730|ref|YP_002038201.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae G54] gi|238690843|sp|B5E6L2|CLPX_STRP4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|147927960|gb|EDK78980.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP9-BS68] gi|194357397|gb|ACF55845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae G54] Length = 410 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L N+ Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 173 Query: 104 E--DRDVLFIDEIHRLS 118 E +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|126741245|ref|ZP_01756924.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. SK209-2-6] gi|126717650|gb|EBA14373.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. SK209-2-6] Length = 422 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 111 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 170 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 171 YNVERAQRGIVYIDEVDKIT 190 >gi|119178672|ref|XP_001240981.1| hypothetical protein CIMG_08144 [Coccidioides immitis RS] Length = 1063 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 38/193 (19%) Query: 43 FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA---- 97 FI K R +L FVGPPG+GKT++ + +AR L + S + ++ Sbjct: 554 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFSVGGLTDVAEIKGHRR 613 Query: 98 ------------ALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137 AL + ++ IDE+ ++ S + E+L P LD Sbjct: 614 TYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPSSALLELLDPEQNSSFLDHY 673 Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194 + V ++LS+ + + PL DR I I L+ Y ++ I +R Sbjct: 674 M-------DVPVDLSKVLFVCTANMTDTIPRPLLDRMEI-IELSGYVADEKMAIAERYLA 725 Query: 195 --GAKLTGLAVTD 205 +L+GL D Sbjct: 726 PAAKELSGLKEVD 738 >gi|2462109|emb|CAA72104.1| stage V sporulation protein K [Bacillus cereus ATCC 10987] Length = 598 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 35/172 (20%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV------------IAKAGDLAALLTNL 103 + +F G PG GKTT+A++VA+ L +SG + + + G + + Sbjct: 325 NFIFTGNPGTGKTTIARLVAKYLKALGYLSSGHLVEVDRARLVAQYVGQTGPKTQAVIDS 384 Query: 104 EDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 VLFIDE + L+ E + L MED + DL+V K + F Sbjct: 385 AKGGVLFIDEAYSLARGGENDFGKEAIDTLVKGMEDLREDLVV----ILAGYKDEMDDF- 439 Query: 156 LIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206 L TNP LQ RF I Y E+L I ++ + G + D+ Sbjct: 440 ---------LKTNPGLQSRFNNHIDFPDYTSEELFMISEKIVESEGFTIADD 482 >gi|150016210|ref|YP_001308464.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium beijerinckii NCIMB 8052] gi|189082489|sp|A6LT28|CLPX_CLOB8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|149902675|gb|ABR33508.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium beijerinckii NCIMB 8052] Length = 429 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 110 NILLLGPTGSGKTLLAQTLARFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDV 169 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 170 EKAERGIIYIDEIDKIA 186 >gi|15595976|ref|NP_249470.1| ATP-dependent protease [Pseudomonas aeruginosa PAO1] gi|107100240|ref|ZP_01364158.1| hypothetical protein PaerPA_01001263 [Pseudomonas aeruginosa PACS2] gi|218893278|ref|YP_002442147.1| putative ATP-dependent protease [Pseudomonas aeruginosa LESB58] gi|254239140|ref|ZP_04932463.1| hypothetical protein PACG_05325 [Pseudomonas aeruginosa C3719] gi|9946668|gb|AAG04168.1|AE004512_11 probable ATP-dependent protease [Pseudomonas aeruginosa PAO1] gi|126171071|gb|EAZ56582.1| hypothetical protein PACG_05325 [Pseudomonas aeruginosa C3719] gi|218773506|emb|CAW29318.1| probable ATP-dependent protease [Pseudomonas aeruginosa LESB58] Length = 799 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 VL VGPPG+GKT++ + +A LG F R + G + +A G L L Sbjct: 379 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 438 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 +E + V+ +DEI +L + E L P D LDL + Sbjct: 439 EVEVMNPVIMLDEIDKLGASYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 487 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++LS+ + + + PL DR + IRL+ Y E+ I +R Sbjct: 488 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYISEEKLAIAKR 532 >gi|15641923|ref|NP_231555.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727847|ref|ZP_01680914.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae V52] gi|147674941|ref|YP_001217454.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae O395] gi|153217637|ref|ZP_01951318.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae 1587] gi|227082051|ref|YP_002810602.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae M66-2] gi|229507983|ref|ZP_04397488.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae BX 330286] gi|229511780|ref|ZP_04401259.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae B33] gi|229515307|ref|ZP_04404767.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae TMA 21] gi|229518917|ref|ZP_04408360.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae RC9] gi|229523941|ref|ZP_04413346.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae bv. albensis VL426] gi|229529053|ref|ZP_04418443.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae 12129(1)] gi|229607529|ref|YP_002878177.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae MJ-1236] gi|254286857|ref|ZP_04961809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae AM-19226] gi|254849009|ref|ZP_05238359.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae MO10] gi|255745320|ref|ZP_05419269.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholera CIRS 101] gi|261210562|ref|ZP_05924855.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp. RC341] gi|262156044|ref|ZP_06029164.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae INDRE 91/1] gi|262167883|ref|ZP_06035583.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae RC27] gi|297579439|ref|ZP_06941367.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae RC385] gi|298498041|ref|ZP_07007848.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae MAK 757] gi|21263486|sp|Q9KQS7|CLPX_VIBCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|172047650|sp|A5F6Z1|CLPX_VIBC3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763872|sp|C3LNM5|CLPX_VIBCM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|9656457|gb|AAF95069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629883|gb|EAX62297.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae V52] gi|124113416|gb|EAY32236.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae 1587] gi|146316824|gb|ABQ21363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae O395] gi|150423007|gb|EDN14956.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae AM-19226] gi|227009939|gb|ACP06151.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae M66-2] gi|227013819|gb|ACP10029.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae O395] gi|229332827|gb|EEN98313.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae 12129(1)] gi|229337522|gb|EEO02539.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae bv. albensis VL426] gi|229343606|gb|EEO08581.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae RC9] gi|229348012|gb|EEO12971.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae TMA 21] gi|229351745|gb|EEO16686.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae B33] gi|229355488|gb|EEO20409.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae BX 330286] gi|229370184|gb|ACQ60607.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae MJ-1236] gi|254844714|gb|EET23128.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae MO10] gi|255737150|gb|EET92546.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholera CIRS 101] gi|260840347|gb|EEX66918.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp. RC341] gi|262023610|gb|EEY42311.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae RC27] gi|262030222|gb|EEY48866.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae INDRE 91/1] gi|297537033|gb|EFH75866.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae RC385] gi|297542374|gb|EFH78424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae MAK 757] gi|327484464|gb|AEA78871.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae LMA3894-4] Length = 426 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|329888406|ref|ZP_08267004.1| metalloprotease [Brevundimonas diminuta ATCC 11568] gi|328846962|gb|EGF96524.1| metalloprotease [Brevundimonas diminuta ATCC 11568] Length = 650 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 20/30 (66%), Positives = 21/30 (70%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 L VGPPG GKT LA+ VA E GV F S SG Sbjct: 202 LLVGPPGTGKTLLARAVAGEAGVPFFSISG 231 >gi|319651746|ref|ZP_08005872.1| ATP-dependent protease [Bacillus sp. 2_A_57_CT2] gi|317396565|gb|EFV77277.1| ATP-dependent protease [Bacillus sp. 2_A_57_CT2] Length = 555 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 12/90 (13%) Query: 2 MDREGLLSRNVSQEDADISL-------LRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL 54 +DRE +V ++ ISL +RP + + GQ + +LK + + Sbjct: 36 IDRESRKEMDVLKKMRSISLTEPLSEKVRPASFADIVGQEDGIKSLKAALCGPNPQ---- 91 Query: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRS 84 HV+ GPPG+GKT A++V E N +S Sbjct: 92 -HVIIYGPPGVGKTAAARLVLEEAKKNAKS 120 >gi|312277431|gb|ADQ62088.1| ATP-dependent metalloprotease FtsH [Streptococcus thermophilus ND03] Length = 637 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E V F S SG V A + +L + + +R + Sbjct: 202 VLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 261 Query: 109 LFIDEI 114 +FIDEI Sbjct: 262 IFIDEI 267 >gi|315037516|ref|YP_004031084.1| cell division protein [Lactobacillus amylovorus GRL 1112] gi|312275649|gb|ADQ58289.1| cell division protein [Lactobacillus amylovorus GRL 1112] gi|327182812|gb|AEA31259.1| cell division protein [Lactobacillus amylovorus GRL 1118] Length = 722 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E V F S SG V A + L N + + Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|331215451|ref|XP_003320406.1| hypothetical protein PGTG_01318 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309299396|gb|EFP75987.1| hypothetical protein PGTG_01318 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 382 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 I RP+++E GQ E + + + A RA+ L H+LF GPPG GKT+ +AR+L Sbjct: 34 IEKYRPKSIESVQGQ-EGTTKI---LSKALNRAD-LPHMLFYGPPGTGKTSTILALARDL 88 >gi|307127779|ref|YP_003879810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae 670-6B] gi|306484841|gb|ADM91710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae 670-6B] Length = 410 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|302348724|ref|YP_003816362.1| Replication factor C large subunit [Acidilobus saccharovorans 345-15] gi|302329136|gb|ADL19331.1| Replication factor C large subunit [Acidilobus saccharovorans 345-15] Length = 484 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTTLAQVVARE 77 RP+++ + Q EA S ++EA K R L GPPG+GKT+L + A + Sbjct: 14 RPKSVNDVVDQEEAKSQFLTWLEAWLKGRPPEKRAALLYGPPGVGKTSLVEAAAHD 69 >gi|301628751|ref|XP_002943510.1| PREDICTED: peroxisome assembly factor 2-like [Xenopus (Silurana) tropicalis] Length = 236 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E + F S GP Sbjct: 8 VLLYGPPGTGKTLLAKAVATECAMTFLSVKGP 39 >gi|295087965|emb|CBK69488.1| DNA polymerase III, tau subunit [Bacteroides xylanisolvens XB1A] Length = 621 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + LK I K L H LF GP G+GKTT A++ A+ + Sbjct: 12 RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66 Query: 82 FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127 + G + A N+ + D + + + +VE++ P Sbjct: 67 TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126 Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 + F L E P ++ I ATT + + R I Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238 N +ED + A G+ EA IAM++ G R A + +V F + + Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237 Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275 I +++DA LL I GFD ++T ++ +F Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295 Query: 276 -GGGPVGIETISAGLS 290 G PV + + G S Sbjct: 296 VGKDPVTLPLLEVGAS 311 >gi|289168392|ref|YP_003446661.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus mitis B6] gi|288907959|emb|CBJ22799.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus mitis B6] Length = 410 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|301095569|ref|XP_002896884.1| chromosome transmission fidelity protein, putative [Phytophthora infestans T30-4] gi|262108531|gb|EEY66583.1| chromosome transmission fidelity protein, putative [Phytophthora infestans T30-4] Length = 881 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 6/39 (15%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD 95 +L GPPG GKTTLA +VAR G N P+ A D Sbjct: 305 ILICGPPGAGKTTLANIVARHAGYN------PIEVNASD 337 >gi|260773193|ref|ZP_05882109.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio metschnikovii CIP 69.14] gi|260612332|gb|EEX37535.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio metschnikovii CIP 69.14] Length = 426 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|256084196|ref|XP_002578317.1| AAA family ATPase [Schistosoma mansoni] gi|238663686|emb|CAZ34555.1| AAA family ATPase, putative [Schistosoma mansoni] Length = 691 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ ++ + G+NF S GP Sbjct: 478 VLLEGPPGCGKTLVAKALSNQAGLNFLSVKGP 509 >gi|254463915|ref|ZP_05077326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacterales bacterium Y4I] gi|206684823|gb|EDZ45305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacterales bacterium Y4I] Length = 422 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 111 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSE 170 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 171 YNVERAQRGIVYIDEVDKIT 190 >gi|195497255|ref|XP_002096023.1| GE25304 [Drosophila yakuba] gi|194182124|gb|EDW95735.1| GE25304 [Drosophila yakuba] Length = 572 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ + + Sbjct: 329 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 388 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 389 IFIDEIDSL 397 >gi|170288047|ref|YP_001738285.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2] gi|170175550|gb|ACB08602.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2] Length = 478 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 93/237 (39%), Gaps = 43/237 (18%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+T E Q ++K I A + +F GP G GKTTLA+++A+ L Sbjct: 9 RPKTFSEVVDQ----DHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCEN 64 Query: 83 RSTSGPV----IAKAGDLAALLTNLE-----DRDVLFIDEIHRLS--------------I 119 R P + D + +E +R IDEI R+ Sbjct: 65 RKGVEPCNSCRACREIDEGTFMDVIELDAASNRG---IDEIRRIRDAVGYRPMEGKYKVY 121 Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 I++E+ E F L E P + V + ATT + + + R + Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVV--------FVLATTNLEKVPPTIISRCQV--- 170 Query: 180 LNFYEIED--LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 F I D ++ +Q A+ G+ + EA IA R+ G R A +L +V F+E Sbjct: 171 FEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE 227 >gi|156383785|ref|XP_001633013.1| predicted protein [Nematostella vectensis] gi|156220077|gb|EDO40950.1| predicted protein [Nematostella vectensis] Length = 357 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 RP+ +++ Q E LK +E A L ++LF GPPG GKT+ VAREL Sbjct: 38 RPKCVDDVAQQEEVVMVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAVAREL 88 >gi|148238400|ref|YP_001223787.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH 7803] gi|166215216|sp|A5GHS5|CLPX_SYNPW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|147846939|emb|CAK22490.1| ATP-dependent Clp protease ATP-binding subunit, ClpX [Synechococcus sp. WH 7803] Length = 451 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 32/151 (21%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL----------T 101 ++L +GP G GKT LAQ +A L V F + +AG D+ +L Sbjct: 138 NILLIGPTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDV 197 Query: 102 NLEDRDVLFIDEIHRLS------IIVEEILYPAMEDFQLDLMVG-----------EGPSA 144 +L R +++IDEI +++ I ++ ++ L ++ G + P Sbjct: 198 DLAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQ 257 Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175 ++I+ S+ I VG L + +Q R G Sbjct: 258 DCIQIDTSQILFICGGAFVG-LDDVVQKRMG 287 >gi|146338365|ref|YP_001203413.1| putative vesicle-fusing ATPase [Bradyrhizobium sp. ORS278] gi|146191171|emb|CAL75176.1| putative Vesicle-fusing ATPase [Bradyrhizobium sp. ORS278] Length = 714 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKA-GDLAALLTNLEDR------DV 108 +LF GPPG GKT LA+ +A E +F SGP ++AK G+ A L ++ ++ + Sbjct: 221 ILFSGPPGTGKTLLARAIAYENKCSFFQISGPEIVAKHYGESEAQLRSVFEQARAKAPSI 280 Query: 109 LFIDEI 114 +F+DE+ Sbjct: 281 VFLDEL 286 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL G PG GKT LA+ +A E GVNF S GP Sbjct: 492 VLLHGAPGTGKTLLAKALATEAGVNFISVRGP 523 >gi|187920723|ref|YP_001889755.1| AAA ATPase central domain-containing protein [Burkholderia phytofirmans PsJN] gi|187719161|gb|ACD20384.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN] Length = 634 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 23/35 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 +L VG PG+GKT LAQ +A E G NF S +G + Sbjct: 226 ILMVGGPGVGKTRLAQALAGECGANFISITGSYFS 260 >gi|328876465|gb|EGG24828.1| peptidase S16 [Dictyostelium fasciculatum] Length = 1046 Score = 39.7 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 67/265 (25%), Positives = 99/265 (37%), Gaps = 47/265 (17%) Query: 8 LSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGL 65 L NV+ D DI ++ + G + +K FI K R + L VGPPG Sbjct: 553 LPWNVTTNDNFDIPSIKASLDRDHYGLDDIKEMIKTFIAVGKLRGSVGGKIILLVGPPGT 612 Query: 66 GKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------ALLTNLEDRDVL 109 GKT++ + +A L F S I+ ++ AL T V+ Sbjct: 613 GKTSIGKSIATALDRQFYRFSVGGISDVAEIKGHRRTFVGAMPGKIIQALKTVKTSNPVI 672 Query: 110 FIDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161 IDEI ++S + E+L P LD + + +LS+ I Sbjct: 673 LIDEIDKISKGSHSDPFAALLEVLDPQQNKNFLDHYM-------DIPYDLSKVLFICTAN 725 Query: 162 RVGLLTNPLQDRFGIPIRLNFY-EIEDLKT----IVQRGAKLTG-----LAVTDEAA--- 208 + PL DR + +RLN Y + E ++ IV TG L +T EA Sbjct: 726 LTHPIPAPLLDRMDV-MRLNGYIQAEQIEIANNYIVPSVKSETGIGDDKLMITKEAIKHL 784 Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFA 233 CE R G + + R R A Sbjct: 785 CEYWCRESGVRNLKKMIERMFRKVA 809 >gi|317479380|ref|ZP_07938514.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides sp. 4_1_36] gi|316904454|gb|EFV26274.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides sp. 4_1_36] Length = 746 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%) Query: 14 QEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGK 67 +ED +L L R GQ EA + ++ +KA + L +LFVGP G+GK Sbjct: 440 KEDDTTALESLHERISSRIYGQEEAVRQVVEAVQMSKAGLLDENKPLASLLFVGPTGVGK 499 Query: 68 TTLAQVVARELGV 80 T +A+V+A ELG+ Sbjct: 500 TEVAKVLAAELGI 512 >gi|307102591|gb|EFN50862.1| hypothetical protein CHLNCDRAFT_28658 [Chlorella variabilis] Length = 187 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT LA+ VA E ++F S GP Sbjct: 43 VLLYGPPGTGKTLLAKAVATECSISFLSVKGP 74 >gi|305691181|gb|ADM65833.1| leaf rust resistance protein Lr10 [Triticum turgidum subsp. dicoccoides] gi|305691184|gb|ADM65835.1| leaf rust resistance protein Lr10 [Triticum turgidum subsp. dicoccoides] Length = 921 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 29/44 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100 V VG GLGKTTLA+ V EL +NF + I+++ D+AA+L Sbjct: 193 VSIVGCAGLGKTTLAKQVYDELRINFEYRAFVSISRSPDMAAIL 236 >gi|296536160|ref|ZP_06898288.1| ATP-dependent Clp protease ATP-binding subunit [Roseomonas cervicalis ATCC 49957] gi|296263531|gb|EFH10028.1| ATP-dependent Clp protease ATP-binding subunit [Roseomonas cervicalis ATCC 49957] Length = 418 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 108 AKSNIMLVGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 167 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 168 YNVERAQRGIVYIDEVDKIS 187 >gi|293372713|ref|ZP_06619095.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CMC 3f] gi|292632522|gb|EFF51118.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CMC 3f] Length = 621 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + LK I K L H LF GP G+GKTT A++ A+ + Sbjct: 12 RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66 Query: 82 FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127 + G + A N+ + D + + + +VE++ P Sbjct: 67 TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126 Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 + F L E P ++ I ATT + + R I Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177 Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238 N +ED + A G+ EA IAM++ G R A + +V F + + Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237 Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275 I +++DA LL I GFD ++T ++ +F Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295 Query: 276 -GGGPVGIETISAGLS 290 G PV + + G S Sbjct: 296 VGKDPVTLPLLEVGAS 311 >gi|283768399|ref|ZP_06341311.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219] gi|283104791|gb|EFC06163.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219] Length = 625 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 +L VGPPG GKT LA+ VA E V F S SG V A + L +++ + Sbjct: 208 ILLVGPPGTGKTMLAKAVAGESNVPFISISGSEFIEMFVGMGASKVRDLFKKAKEKAPCI 267 Query: 109 LFIDEI 114 +FIDEI Sbjct: 268 VFIDEI 273 >gi|260663745|ref|ZP_05864633.1| cell division protein FtsH [Lactobacillus fermentum 28-3-CHN] gi|260551796|gb|EEX24912.1| cell division protein FtsH [Lactobacillus fermentum 28-3-CHN] Length = 698 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L ++ + Sbjct: 205 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKTAPSI 264 Query: 109 LFIDEI 114 +FIDEI Sbjct: 265 IFIDEI 270 >gi|254796847|ref|YP_003081684.1| DNA polymerase III, subunits gamma and tau [Neorickettsia risticii str. Illinois] gi|254590084|gb|ACT69446.1| DNA polymerase III, subunits gamma and tau [Neorickettsia risticii str. Illinois] Length = 403 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 12/117 (10%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RPR L E GQ L + A+ AR E VL GP G GKTT A+ V L + Sbjct: 18 RPRLLNEIVGQ----DFLVKCLSASIARDEVAGAVLLSGPYGTGKTTTARAVTLSLLCSN 73 Query: 83 RSTSGPVIAKAGDLAALLTNLEDRDVLFIDE-----IHRLSIIVEEILY-PAMEDFQ 133 R P + L+ L N DVL ID + + +++E LY P + ++ Sbjct: 74 RMDVLPCLKCDSCLSVL--NGSHPDVLEIDAASNTGVEDVRMLIEGALYKPLLSKYK 128 >gi|253681026|ref|ZP_04861829.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum D str. 1873] gi|253562875|gb|EES92321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum D str. 1873] Length = 431 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 110 NILLLGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDV 169 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 170 EKAERGIIYIDEIDKIA 186 >gi|168031129|ref|XP_001768074.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680712|gb|EDQ67146.1| predicted protein [Physcomitrella patens subsp. patens] Length = 505 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108 VL GPPG GKT LA+ VA E G F + S +A G+ ++ L D Sbjct: 260 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRVLFDLARAYAPST 319 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 320 IFIDEIDSL 328 >gi|18398708|ref|NP_565435.1| AAA-type ATPase family protein [Arabidopsis thaliana] gi|15450828|gb|AAK96685.1| putative AAA-type ATPase [Arabidopsis thaliana] gi|20197813|gb|AAD15504.2| putative AAA-type ATPase [Arabidopsis thaliana] gi|20259834|gb|AAM13264.1| putative AAA-type ATPase [Arabidopsis thaliana] gi|330251663|gb|AEC06757.1| AAA-type ATPase-like protein [Arabidopsis thaliana] Length = 636 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 35/157 (22%) Query: 39 NLKVFIEA-AKARAEALDH------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 +LK IE A+A A H ++F GPPG GKT +A+ +AR+ G+++ +G +A Sbjct: 363 SLKTRIERLARATANTKSHKAPFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 422 Query: 92 KAGDLAALLTNLED----------RDVLFIDE-----IHRLSIIVEEILYPAMEDFQLDL 136 G A +T + + +LFIDE R S + E A+ L Sbjct: 423 PLG--AQAVTKIHEIFDWAKKSNKGLLLFIDEADAFLCERNSTYMSEAQRSALN----AL 476 Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173 + G +R + L+ AT R G L + + DR Sbjct: 477 LFRTGDQSRDI-------VLVLATNRPGDLDSAVTDR 506 >gi|74002396|ref|XP_853576.1| PREDICTED: similar to proteasome 26S ATPase subunit 6 [Canis familiaris] Length = 260 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 8 LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58 L N+S ED ++S E G E L+ IE E V L Sbjct: 118 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171 Query: 59 FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110 GPPG GKT LA+ VA +L NF + S ++ K G+ A L+ + + RD ++F Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 231 Query: 111 IDEI 114 +DEI Sbjct: 232 MDEI 235 >gi|21226956|ref|NP_632878.1| cell division cycle protein 48-like protein [Methanosarcina mazei Go1] gi|20905268|gb|AAM30550.1| Cell division cycle protein 48 homolog [Methanosarcina mazei Go1] Length = 428 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108 +LFVGPPG GKT++A+ ++ +L + F +I AK D LL + + Sbjct: 213 LLFVGPPGTGKTSVARALSEQLSIPFVEVKLSMITDQYLGETAKNIDRVFLLAKKLNPCI 272 Query: 109 LFIDEI 114 LFIDE+ Sbjct: 273 LFIDEL 278 >gi|429100|emb|CAA53625.1| Lon protease-like protein [Homo sapiens] gi|741362|prf||2007252A ATP-dependent lon protease Length = 937 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S E+ D++ + E+ G + + FI ++ R +L F GPPG+GKT++A Sbjct: 452 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 511 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G V A G + L + + ++ IDE+ Sbjct: 512 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 571 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ S + E+L P LD + V ++LS+ I + Sbjct: 572 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 624 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 625 EPLRDRMEM-INVSGYVAQEKLAIAER 650 >gi|15901412|ref|NP_346016.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae TIGR4] gi|15903470|ref|NP_359020.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae R6] gi|116517127|ref|YP_816859.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae D39] gi|148984921|ref|ZP_01818174.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP3-BS71] gi|148997363|ref|ZP_01824968.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP11-BS70] gi|149007515|ref|ZP_01831150.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP18-BS74] gi|149007878|ref|ZP_01831465.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP18-BS74] gi|149012698|ref|ZP_01833674.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP19-BS75] gi|149022039|ref|ZP_01836001.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP23-BS72] gi|168483552|ref|ZP_02708504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC1873-00] gi|168486832|ref|ZP_02711340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC1087-00] gi|168491537|ref|ZP_02715680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC0288-04] gi|168493474|ref|ZP_02717617.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC3059-06] gi|168575233|ref|ZP_02721196.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae MLV-016] gi|225855011|ref|YP_002736523.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae JJA] gi|225857195|ref|YP_002738706.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae P1031] gi|225859326|ref|YP_002740836.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae 70585] gi|237650252|ref|ZP_04524504.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae CCRI 1974] gi|237820865|ref|ZP_04596710.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae CCRI 1974M2] gi|303260196|ref|ZP_07346168.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP-BS293] gi|303262587|ref|ZP_07348528.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP14-BS292] gi|303264989|ref|ZP_07350904.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae BS397] gi|303266452|ref|ZP_07352340.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae BS457] gi|303269034|ref|ZP_07354816.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae BS458] gi|307068212|ref|YP_003877178.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus pneumoniae AP200] gi|54036857|sp|P63792|CLPX_STRR6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|54040895|sp|P63791|CLPX_STRPN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|122278295|sp|Q04JH9|CLPX_STRP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763865|sp|C1C8G0|CLPX_STRP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763868|sp|C1CFF2|CLPX_STRZJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763869|sp|C1CLR8|CLPX_STRZP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|14973060|gb|AAK75656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae TIGR4] gi|15459081|gb|AAL00231.1| ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) [Streptococcus pneumoniae R6] gi|116077703|gb|ABJ55423.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae D39] gi|147756418|gb|EDK63459.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP11-BS70] gi|147760605|gb|EDK67579.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP18-BS74] gi|147760874|gb|EDK67844.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP18-BS74] gi|147763298|gb|EDK70236.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP19-BS75] gi|147922943|gb|EDK74059.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP3-BS71] gi|147929883|gb|EDK80872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP23-BS72] gi|172043151|gb|EDT51197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC1873-00] gi|183570188|gb|EDT90716.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC1087-00] gi|183574196|gb|EDT94724.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC0288-04] gi|183576310|gb|EDT96838.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC3059-06] gi|183578742|gb|EDT99270.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae MLV-016] gi|225722023|gb|ACO17877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae 70585] gi|225723578|gb|ACO19431.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae JJA] gi|225725234|gb|ACO21086.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae P1031] gi|301794578|emb|CBW37022.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus pneumoniae INV104] gi|301800400|emb|CBW33031.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus pneumoniae OXC141] gi|301802287|emb|CBW35039.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus pneumoniae INV200] gi|302636304|gb|EFL66798.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP14-BS292] gi|302638693|gb|EFL69156.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP-BS293] gi|302641424|gb|EFL71789.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae BS458] gi|302644030|gb|EFL74289.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae BS457] gi|302645508|gb|EFL75740.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae BS397] gi|306409749|gb|ADM85176.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus pneumoniae AP200] gi|332199613|gb|EGJ13688.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA41317] gi|332201010|gb|EGJ15081.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA47901] Length = 410 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|67624401|ref|XP_668483.1| Ruv DNA-helicase-related protein [Cryptosporidium hominis TU502] gi|126653037|ref|XP_001388382.1| Ruv DNA-helicase-related protein [Cryptosporidium parvum Iowa II] gi|54659691|gb|EAL38257.1| Ruv DNA-helicase-related protein [Cryptosporidium hominis] gi|126117475|gb|EAZ51575.1| Ruv DNA-helicase-related protein [Cryptosporidium parvum Iowa II] gi|323508497|dbj|BAJ77142.1| cgd7_2090 [Cryptosporidium parvum] gi|323509765|dbj|BAJ77775.1| cgd7_2090 [Cryptosporidium parvum] Length = 457 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 32 GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 GQ++A + V + + + A VL GPPG GKT +AQ +A ELG Sbjct: 43 GQLQARESAGVVLSLIQNKKLAGKAVLLAGPPGTGKTAIAQAIAHELG 90 >gi|326934254|ref|XP_003213207.1| PREDICTED: lon protease homolog, mitochondrial-like [Meleagris gallopavo] Length = 815 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 33/209 (15%) Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTT 69 S+E+ +++ + E+ G + + FI ++ R +L F GPPG+GKT+ Sbjct: 335 KCSEENLELTRAQAVLEEDHYGMDDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTS 394 Query: 70 LAQVVARELGVN-FRSTSG--------------PVIAKAGDLAALLTNLEDRD-VLFIDE 113 +A+ +AR L FR + G V A G + L + + ++ IDE Sbjct: 395 IARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDE 454 Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 + ++ S + E+L P LD + V ++LS+ I Sbjct: 455 VDKIGRGYQGDPSSALLELLDPEQNSNFLDHYL-------DVPVDLSKVLFICTANVTET 507 Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + PL+DR + I ++ Y E+ I +R Sbjct: 508 IPEPLRDRMEV-INVSGYVAEEKLAIAER 535 >gi|324096504|gb|ADY17781.1| RE37382p [Drosophila melanogaster] Length = 554 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ + + Sbjct: 311 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 370 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 371 IFIDEIDSL 379 >gi|319939271|ref|ZP_08013634.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus anginosus 1_2_62CV] gi|319811667|gb|EFW07943.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus anginosus 1_2_62CV] Length = 410 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +A+ L V F + +AG D+ +L L Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173 Query: 104 --EDRDVLFIDEIHRLS 118 +R ++++DEI +++ Sbjct: 174 ERAERGIIYVDEIDKIA 190 >gi|313894617|ref|ZP_07828180.1| cell division protease FtsH [Veillonella sp. oral taxon 158 str. F0412] gi|313440807|gb|EFR59236.1| cell division protease FtsH [Veillonella sp. oral taxon 158 str. F0412] Length = 642 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL GPPG GKT LA+ VA E GV F + SG V A + L T + + Sbjct: 190 VLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFTQAKKNAPCI 249 Query: 109 LFIDEI 114 +FIDEI Sbjct: 250 IFIDEI 255 >gi|305691179|gb|ADM65832.1| leaf rust resistance protein Lr10 [Triticum turgidum subsp. dicoccoides] Length = 921 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 29/44 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100 V VG GLGKTTLA+ V EL +NF + I+++ D+AA+L Sbjct: 193 VSIVGCAGLGKTTLAKQVYDELRINFEYRAFVSISRSPDMAAIL 236 >gi|302387411|ref|YP_003823233.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum WM1] gi|302198039|gb|ADL05610.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum WM1] Length = 625 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 15/105 (14%) Query: 25 RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77 +T + GQ EA LK ++ A A L VGPPG GKT LA+ VA E Sbjct: 175 KTFRDVAGQEEAKEALKEIVDFLHNPQKYADIGASLPKGALLVGPPGTGKTLLAKAVAGE 234 Query: 78 LGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114 V F S SG + G AA + +L + ++FIDEI Sbjct: 235 AHVPFFSISGSEFVEMFVGMGAAKVRDLFKQAGEKAPCIVFIDEI 279 >gi|283954556|ref|ZP_06372075.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 414] gi|283793960|gb|EFC32710.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 414] Length = 538 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL +GPPG+GKT +A+ VA E GV F SG Sbjct: 188 VLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGS 219 >gi|271968523|ref|YP_003342719.1| ATP-dependent protease ATP-binding subunit [Streptosporangium roseum DSM 43021] gi|270511698|gb|ACZ89976.1| ATP-dependent protease ATP-binding subunit [Streptosporangium roseum DSM 43021] Length = 426 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 31/130 (23%) Query: 20 SLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD------------HVLFVGP 62 SL +PR + EF GQ +A L V + R ++ + ++L +GP Sbjct: 60 SLPKPREIYEFLDAYVIGQDQAKKALSVAVYNHYKRVQSGERGRDDGIELSKSNILLLGP 119 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV------- 108 G GKT LAQ +A+ L V F + +AG + + N+ D DV Sbjct: 120 TGSGKTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGI 179 Query: 109 LFIDEIHRLS 118 ++IDE+ +++ Sbjct: 180 IYIDEVDKIA 189 >gi|289580410|ref|YP_003478876.1| ATPase AAA [Natrialba magadii ATCC 43099] gi|289529963|gb|ADD04314.1| AAA ATPase central domain protein [Natrialba magadii ATCC 43099] Length = 514 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 RP TL E G +A LK E A+ + D V+ G PG+GKT+ A +A +LG Sbjct: 8 YRPTTLSEVRGNNKARDKLK---EWAETWDDHQDAVIVHGSPGVGKTSAAHALANDLG 62 >gi|170781896|ref|YP_001710228.1| ATP-dependent protease ATP-binding subunit ClpX [Clavibacter michiganensis subsp. sepedonicus] gi|189082488|sp|B0RAS4|CLPX_CLAMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|169156464|emb|CAQ01612.1| ATP dependent Clp Protease ATP binding subunit [Clavibacter michiganensis subsp. sepedonicus] Length = 426 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105 A ++L +GP G GKT LAQ +A+ L V F + +AG + + N+ D Sbjct: 117 AKSNILLIGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 176 Query: 106 RDV-------LFIDEIHRLS 118 DV ++IDE+ +++ Sbjct: 177 YDVKRAETGIIYIDEVDKIA 196 >gi|116794435|gb|ABK27142.1| unknown [Picea sitchensis] Length = 439 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 8/68 (11%) Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAALLTNLED--RD----VL 109 L GPPG GK+ LA+ VA E F S +S +++K G+ L++NL RD ++ Sbjct: 170 LLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQMARDCAPSII 229 Query: 110 FIDEIHRL 117 FIDEI L Sbjct: 230 FIDEIDSL 237 >gi|59711404|ref|YP_204180.1| ATP-dependent protease ATP-binding subunit [Vibrio fischeri ES114] gi|75354361|sp|Q5E6Q4|CLPX_VIBF1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|59479505|gb|AAW85292.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Vibrio fischeri ES114] Length = 428 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 30/145 (20%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD--- 55 RE L +S +++ L PR + E GQ A L V + R D Sbjct: 50 REELKDNTLSPKESSEELPTPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTK 109 Query: 56 --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---- 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 110 DGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKL 169 Query: 104 ----------EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 170 LQKCDYDPAKAERGIVYIDEIDKIS 194 >gi|76154228|gb|AAX25721.2| SJCHGC01613 protein [Schistosoma japonicum] Length = 210 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ ++ + G+NF S GP Sbjct: 107 VLLEGPPGCGKTLVAKALSNQAGLNFLSVKGP 138 >gi|77458032|ref|YP_347537.1| DNA polymerase III subunits gamma and tau [Pseudomonas fluorescens Pf0-1] gi|77382035|gb|ABA73548.1| DNA polymerase III subunit Tau [Pseudomonas fluorescens Pf0-1] Length = 696 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RPR+ E GQ LK I A + + L H LF G G+GKTT+A+++A+ L Sbjct: 11 RPRSFREMVGQTHV---LKALINALDS--QRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65 Query: 82 FRSTSGPV 89 TS P Sbjct: 66 TGITSSPC 73 >gi|20091941|ref|NP_618016.1| IstB helper protein [Methanosarcina acetivorans C2A] gi|19917143|gb|AAM06496.1| IstB helper protein [Methanosarcina acetivorans C2A] Length = 257 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 13/103 (12%) Query: 24 PRTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLA-----QVVARE 77 +TLEEF + + + K + A R L++V+F+GPPG+GK+ LA +V Sbjct: 71 KKTLEEFDFEFQKSIDKKAIEDLATLRFVHNLENVVFLGPPGVGKSHLAIALGIEVAKAG 130 Query: 78 LGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114 + V F +T G +I K G L L VL IDE+ Sbjct: 131 ISVYFTNT-GNLIEKLKIANREGMLEKKLKGFMKFKVLIIDEM 172 >gi|148259929|ref|YP_001234056.1| ATP-dependent protease ATP-binding subunit [Acidiphilium cryptum JF-5] gi|326403117|ref|YP_004283198.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidiphilium multivorum AIU301] gi|254763827|sp|A5FX05|CLPX_ACICJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|146401610|gb|ABQ30137.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidiphilium cryptum JF-5] gi|325049978|dbj|BAJ80316.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidiphilium multivorum AIU301] Length = 418 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ VGP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 109 AKSNIMLVGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 168 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ ++S Sbjct: 169 YNVERAQRGIVYIDEVDKIS 188 >gi|326569250|gb|EGE19311.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis BC7] Length = 438 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LAQ +A+ L V F + +AG + + N+ Sbjct: 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYDV 198 Query: 104 --EDRDVLFIDEIHRLS 118 ++ +++IDEI ++S Sbjct: 199 QKAEKGIIYIDEIDKIS 215 >gi|307726327|ref|YP_003909540.1| AAA ATPase central domain-containing protein [Burkholderia sp. CCGE1003] gi|307586852|gb|ADN60249.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1003] Length = 636 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 23/35 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 +L VG PG+GKT LAQ +A E G NF S +G + Sbjct: 226 ILMVGGPGVGKTRLAQALAGECGANFISITGSYFS 260 >gi|281352318|gb|EFB27902.1| hypothetical protein PANDA_009106 [Ailuropoda melanoleuca] Length = 735 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN------LEDRDV 108 VL GPPG GKT +A+ VA E+G +GP +I+K G+ A L L + Sbjct: 337 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEAALRHPSI 396 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 397 IFIDELDALC 406 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG KT +A+ +A E G+NF + GP Sbjct: 611 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 642 >gi|260768946|ref|ZP_05877880.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio furnissii CIP 102972] gi|260616976|gb|EEX42161.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio furnissii CIP 102972] gi|315180642|gb|ADT87556.1| ATP-dependent protease ATP-binding subunit [Vibrio furnissii NCTC 11218] Length = 426 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|300707763|ref|XP_002996077.1| hypothetical protein NCER_100876 [Nosema ceranae BRL01] gi|239605343|gb|EEQ82406.1| hypothetical protein NCER_100876 [Nosema ceranae BRL01] Length = 520 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108 VL GPPG GKT LA+ V+ NF S GP +I+K GD + +L + V Sbjct: 314 VLLYGPPGCGKTLLAKAVSNMSHCNFISVRGPELISKFVGDSEKEIRDLFGKAKHLQPCV 373 Query: 109 LFIDEIHRLS 118 +F DEI L Sbjct: 374 IFFDEIDSLC 383 >gi|238019647|ref|ZP_04600073.1| hypothetical protein VEIDISOL_01521 [Veillonella dispar ATCC 17748] gi|237863688|gb|EEP64978.1| hypothetical protein VEIDISOL_01521 [Veillonella dispar ATCC 17748] Length = 642 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108 VL GPPG GKT LA+ VA E GV F + SG V A + L T + + Sbjct: 190 VLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFTQAKKNAPCI 249 Query: 109 LFIDEI 114 +FIDEI Sbjct: 250 IFIDEI 255 >gi|229521843|ref|ZP_04411260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae TM 11079-80] gi|229340768|gb|EEO05773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae TM 11079-80] Length = 426 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|228476803|ref|ZP_04061451.1| cell division protein FtsH [Streptococcus salivarius SK126] gi|228251540|gb|EEK10677.1| cell division protein FtsH [Streptococcus salivarius SK126] Length = 659 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108 VL GPPG GKT LA+ VA E V F S SG V A + +L + + +R + Sbjct: 220 VLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 279 Query: 109 LFIDEI 114 +FIDEI Sbjct: 280 IFIDEI 285 >gi|224536875|ref|ZP_03677414.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus DSM 14838] gi|224521499|gb|EEF90604.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus DSM 14838] Length = 615 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81 RP T E GQ + LK I K L H LF GP G+GKTT A++ A+ + Sbjct: 12 RPTTFESVVGQRALTTTLKNAIATGK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66 Query: 82 FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127 + G + A N+ + D + + + +VE++ P Sbjct: 67 TPTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116 >gi|184154697|ref|YP_001843037.1| cell division protein FtsH [Lactobacillus fermentum IFO 3956] gi|227514337|ref|ZP_03944386.1| M41 family endopeptidase FtsH [Lactobacillus fermentum ATCC 14931] gi|183226041|dbj|BAG26557.1| cell division protein FtsH [Lactobacillus fermentum IFO 3956] gi|227087309|gb|EEI22621.1| M41 family endopeptidase FtsH [Lactobacillus fermentum ATCC 14931] gi|299782819|gb|ADJ40817.1| M41 family endopeptidase FtsH [Lactobacillus fermentum CECT 5716] Length = 722 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL GPPG GKT LA+ VA E GV F S SG + G A+ + +L ++ + Sbjct: 229 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKTAPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|160899253|ref|YP_001564835.1| AAA ATPase [Delftia acidovorans SPH-1] gi|160364837|gb|ABX36450.1| AAA ATPase [Delftia acidovorans SPH-1] Length = 1841 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 41 KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 ++ + R + + ++ + PPG GKTTL + VA LG+ F +GP + + Sbjct: 1295 QIGVAGENKRTDQMGLLMMISPPGYGKTTLMEYVANRLGLIFMKINGPALGHS 1347 >gi|146082368|ref|XP_001464492.1| hypothetical protein [Leishmania infantum JPCM5] gi|134068585|emb|CAM66881.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 214 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 42 VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA 97 +F+E A R L H++ GPPG GKTTLA +A G+ + + A AGD+A Sbjct: 40 IFLEEAFRRPTPL-HIIITGPPGSGKTTLAAKLAAHYGITHVAATS---AAAGDMA 91 >gi|152987354|ref|YP_001350082.1| putative ATP-dependent protease [Pseudomonas aeruginosa PA7] gi|150962512|gb|ABR84537.1| ATP-dependent protease La [Pseudomonas aeruginosa PA7] Length = 799 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 VL VGPPG+GKT++ + +A LG F R + G + +A G L L Sbjct: 379 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 438 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 +E + V+ +DEI +L + E L P D LDL + Sbjct: 439 EVEVMNPVIMLDEIDKLGASYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 487 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++LS+ + + + PL DR + IRL+ Y E+ I +R Sbjct: 488 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYISEEKLAIAKR 532 >gi|91777844|ref|YP_553052.1| putative cell division protein [Burkholderia xenovorans LB400] gi|91690504|gb|ABE33702.1| Putative cell division protein [Burkholderia xenovorans LB400] Length = 634 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 23/35 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 +L VG PG+GKT LAQ +A E G NF S +G + Sbjct: 226 ILMVGGPGVGKTRLAQALAGECGANFISITGSYFS 260 >gi|17945419|gb|AAL48764.1| RE17942p [Drosophila melanogaster] Length = 572 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ + + Sbjct: 329 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 388 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 389 IFIDEIDSL 397 >gi|27363511|ref|NP_759039.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio vulnificus CMCP6] gi|37679289|ref|NP_933898.1| ATP-dependent protease ATP-binding subunit [Vibrio vulnificus YJ016] gi|320156968|ref|YP_004189347.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio vulnificus MO6-24/O] gi|31340018|sp|Q8DG27|CLPX_VIBVU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|46576400|sp|Q7MMG6|CLPX_VIBVY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|27359627|gb|AAO08566.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio vulnificus CMCP6] gi|37198032|dbj|BAC93869.1| ATP-dependent Clp protease, ATPase subunit [Vibrio vulnificus YJ016] gi|319932280|gb|ADV87144.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio vulnificus MO6-24/O] Length = 426 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 176 AKAERGIVYIDEIDKIS 192 >gi|17556486|ref|NP_499577.1| hypothetical protein Y75B8A.4 [Caenorhabditis elegans] gi|75028907|sp|Q9XW87|LONP2_CAEEL RecName: Full=Lon protease homolog 2, peroxisomal gi|3980014|emb|CAA22082.1| C. elegans protein Y75B8A.4, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 773 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 40/216 (18%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-----LFVGP 62 L N S D DI L + RT+ T EA ++K + A + + V F GP Sbjct: 281 LPWNTSTID-DIELHKARTI--LTESHEAMDDVKERVLEHLAVCKMNNSVKGMILCFTGP 337 Query: 63 PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALLTNLEDR 106 PG+GKT++A+ +A +G F+ S I D + AL T + Sbjct: 338 PGIGKTSIAKAIAESMGRKFQRVSLGGIRDESDIRGHRRTYVAAMPGRIIEALKTCKTNN 397 Query: 107 DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158 V +DE+ +L S + E+L P D + ++ ++S+ IA Sbjct: 398 PVFLLDEVDKLYSGNQGSPSAALLELLDPEQNSTFHDHYL-------NIPFDVSKIMFIA 450 Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 + L L+DR I I ++ Y +++ I + Sbjct: 451 TANDIDRLEPALRDRLEI-IEMSGYSLKEKVKICEN 485 >gi|332799278|ref|YP_004460777.1| stage V sporulation protein K [Tepidanaerobacter sp. Re1] gi|332697013|gb|AEE91470.1| stage V sporulation protein K [Tepidanaerobacter sp. Re1] Length = 335 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 71/278 (25%), Positives = 114/278 (41%), Gaps = 56/278 (20%) Query: 37 CSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVARELGVNFR-----S 84 ++ F E + RAE + H++F G PG GKTT VAR LG F+ Sbjct: 77 VKEIQAFSEIQRKRAEEKLLAEPQVLHMIFKGNPGTGKTT----VARLLGKIFKHIGILE 132 Query: 85 TSGPVIAKAGDLAALL---TNLEDRD--------VLFIDEIHRLSIIVE--------EIL 125 V + D+ T + RD +LFIDE + L+ E + L Sbjct: 133 KGHTVEVERADIVGEYIGHTAQKTRDQIKRARGGILFIDEAYSLARGGEKDFGKEAIDTL 192 Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYE 184 AMED++ DL+V K + F L NP L+ RF I I N Y Sbjct: 193 VKAMEDYKDDLIV----ILAGYKDEMDWF----------LQINPGLRSRFPIQIEFNDYS 238 Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIA--MRSRGTPRIAGRL--LRRVRDFAEVAHAKT 240 +++L I + A+ + EA + ++S +L R VR+ E A + Sbjct: 239 VDELMQIAKMMAEKRQYRFSPEALLQFEDILQSSMDNMFYNKLGNARLVRNMIEKAIRRQ 298 Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278 R ++ + + R++ + + Q++ + + FGGG Sbjct: 299 ALRLVSQSKISRISREDLL--QIEPEDIPVDISEFGGG 334 >gi|325955980|ref|YP_004286590.1| cell division protein [Lactobacillus acidophilus 30SC] gi|325332545|gb|ADZ06453.1| cell division protein [Lactobacillus acidophilus 30SC] Length = 722 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E V F S SG V A + L N + + Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 288 Query: 109 LFIDEI 114 +FIDEI Sbjct: 289 IFIDEI 294 >gi|325186172|emb|CCA20675.1| unnamed protein product putative [Albugo laibachii Nc14] Length = 941 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 41/176 (23%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98 + FVGPPG+GKT++ + +A L F R+ G + K + Sbjct: 495 ICFVGPPGVGKTSIGKSIAECLNREFYRFSVGGLSDVAEIKGHRRTYVGAMPGKV--IQC 552 Query: 99 LLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150 L T ++ IDEI +L + E+L P+ +D + V ++ Sbjct: 553 LKTTQSSNPLILIDEIDKLGKGYQGDPASALLELLDPSQNQHFVDHFM-------DVPVD 605 Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI-----VQRGAKLTGL 201 LSR I + PL DR + +RL+ Y+ + +I V + K TGL Sbjct: 606 LSRILFICTANVTDTIPGPLLDRMEV-LRLSGYDAPEKLSIAREYLVPKVMKRTGL 660 >gi|317123027|ref|YP_004103030.1| Sigma 54 interacting domain protein [Thermaerobacter marianensis DSM 12885] gi|315593007|gb|ADU52303.1| Sigma 54 interacting domain protein [Thermaerobacter marianensis DSM 12885] Length = 564 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP+ E+ GQ E L+ + + HVL GPPG+GKT A++V E N Sbjct: 64 RPQRFEDIVGQEEGLRALRAALCGPNPQ-----HVLIYGPPGVGKTAAARLVLEEAKRNP 118 Query: 83 RSTSGP 88 RS P Sbjct: 119 RSPFRP 124 >gi|331242462|ref|XP_003333877.1| cell division cycle protein 48 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309312867|gb|EFP89458.1| cell division cycle protein 48 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 795 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 20/32 (62%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ VA E NF S GP Sbjct: 515 VLLWGPPGCGKTLVAKAVANESQANFISVKGP 546 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 10/67 (14%) Query: 57 VLFVGPPGLGKTTLAQVVARELGV---NFRSTSGPVIAKAGDLAALLTNLEDRD------ 107 +L GPPG GKT LA +A +LGV N STS V +G+ + ++ ++ Sbjct: 178 LLLCGPPGCGKTMLANAIANQLGVRLINVSSTSI-VSGMSGESEKAIRDIFEQATKQAPC 236 Query: 108 VLFIDEI 114 +LFIDEI Sbjct: 237 LLFIDEI 243 >gi|308160432|gb|EFO62923.1| Replication factor C, subunit 4 [Giardia lamblia P15] Length = 322 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 19/123 (15%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78 RPR+L+ G E + L+ F AA+ L ++L G PGLGKTT+A +A ++ Sbjct: 11 RPRSLDGLIGNPEILARLRYF--AAQGN---LPNILLTGGPGLGKTTIALCLANQMLGAH 65 Query: 79 -GVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSIIVEEILYPA 128 V F + D+ A + + V +F+DE ++ +++L Sbjct: 66 RSVAFLELNASDERNVSDIRAKVKTFAQKQVTLPTGIQKLVFLDECDAMTEAAQQVLRRI 125 Query: 129 MED 131 M+D Sbjct: 126 MDD 128 >gi|307307908|ref|ZP_07587633.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C] gi|306901524|gb|EFN32127.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C] Length = 623 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 9/67 (13%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------D 107 +L GPPG GKT A +AR G F TS G L +L + Sbjct: 230 LLLSGPPGTGKTLFASALARSCGAKFIGTSSAQWQSKGHLGDMLGAMRKSFREAADAAPS 289 Query: 108 VLFIDEI 114 VLFIDE Sbjct: 290 VLFIDEF 296 >gi|293391573|ref|ZP_06635907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952107|gb|EFE02226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aggregatibacter actinomycetemcomitans D7S-1] Length = 410 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104 ++L +GP G GKT LA+ +AR L V F + +AG L LL N + Sbjct: 109 NILLIGPTGSGKTLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDI 168 Query: 105 ---DRDVLFIDEIHRLS 118 ++ +++IDEI +++ Sbjct: 169 ERAEQGIIYIDEIDKIT 185 >gi|323529454|ref|YP_004231606.1| AAA ATPase central domain-containing protein [Burkholderia sp. CCGE1001] gi|323386456|gb|ADX58546.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1001] Length = 638 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 23/35 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 +L VG PG+GKT LAQ +A E G NF S +G + Sbjct: 226 ILMVGGPGVGKTRLAQALAGECGANFISITGSYFS 260 >gi|268592035|ref|ZP_06126256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia rettgeri DSM 1131] gi|291312427|gb|EFE52880.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia rettgeri DSM 1131] Length = 425 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 115 NILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|261346363|ref|ZP_05974007.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia rustigianii DSM 4541] gi|282565677|gb|EFB71212.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia rustigianii DSM 4541] Length = 425 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 115 NILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|197335469|ref|YP_002155558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio fischeri MJ11] gi|238690274|sp|B5FBZ9|CLPX_VIBFM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|197316959|gb|ACH66406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio fischeri MJ11] Length = 428 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 30/145 (20%) Query: 4 REGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD--- 55 RE L +S +++ L PR + E GQ A L V + R D Sbjct: 50 REELKDNTLSPKESSEELPTPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTK 109 Query: 56 --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---- 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 110 DGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKL 169 Query: 104 ----------EDRDVLFIDEIHRLS 118 +R +++IDEI ++S Sbjct: 170 LQKCDYDPAKAERGIVYIDEIDKIS 194 >gi|195389576|ref|XP_002053452.1| GJ23329 [Drosophila virilis] gi|194151538|gb|EDW66972.1| GJ23329 [Drosophila virilis] Length = 607 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ L + Sbjct: 364 VLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 423 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 424 IFIDEIDAL 432 >gi|183601062|ref|ZP_02962555.1| hypothetical protein PROSTU_04685 [Providencia stuartii ATCC 25827] gi|188019402|gb|EDU57442.1| hypothetical protein PROSTU_04685 [Providencia stuartii ATCC 25827] Length = 425 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 115 NILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|163746711|ref|ZP_02154068.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex HEL-45] gi|161379825|gb|EDQ04237.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex HEL-45] Length = 422 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSE 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189 >gi|188581624|ref|YP_001925069.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium populi BJ001] gi|238692872|sp|B1Z9C8|CLPX_METPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|179345122|gb|ACB80534.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacterium populi BJ001] Length = 423 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A +++ +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNIMLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189 >gi|56757311|gb|AAW26827.1| unknown [Schistosoma japonicum] Length = 182 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 22/32 (68%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 VL GPPG GKT +A+ ++ + G+NF S GP Sbjct: 79 VLLEGPPGCGKTLVAKALSNQAGLNFLSVKGP 110 >gi|24644145|ref|NP_524997.2| katanin 60 [Drosophila melanogaster] gi|23170422|gb|AAF52059.2| katanin 60 [Drosophila melanogaster] Length = 572 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108 VL VGPPG GKT LA+ VA E G F + S + G+ + + Sbjct: 329 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 388 Query: 109 LFIDEIHRL 117 +FIDEI L Sbjct: 389 IFIDEIDSL 397 >gi|33599899|ref|NP_887459.1| putative ATPase [Bordetella bronchiseptica RB50] gi|33567496|emb|CAE31409.1| putative ATPase [Bordetella bronchiseptica RB50] Length = 331 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 8/39 (20%) Query: 50 RAEAL--------DHVLFVGPPGLGKTTLAQVVARELGV 80 RAEAL D +LF GPPG GKT A+V+A ELG+ Sbjct: 109 RAEALQSYGLYPADRLLFCGPPGCGKTLTAEVLASELGL 147 >gi|84686589|ref|ZP_01014482.1| ATP-dependent protease ATP-binding subunit [Maritimibacter alkaliphilus HTCC2654] gi|84665502|gb|EAQ11979.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales bacterium HTCC2654] Length = 423 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 112 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 171 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 172 YNVERAQRGIVYIDEVDKIT 191 >gi|83943112|ref|ZP_00955572.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp. EE-36] gi|83954270|ref|ZP_00962990.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp. NAS-14.1] gi|83841307|gb|EAP80477.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp. NAS-14.1] gi|83846120|gb|EAP83997.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp. EE-36] Length = 421 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 A ++L +GP G GKT LAQ +AR L V F + +AG + + N+ Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 169 Query: 104 -----EDRDVLFIDEIHRLS 118 R +++IDE+ +++ Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189 >gi|57242029|ref|ZP_00369969.1| cell division protein (ftsH) [Campylobacter upsaliensis RM3195] gi|57017221|gb|EAL54002.1| cell division protein (ftsH) [Campylobacter upsaliensis RM3195] Length = 530 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL +GPPG+GKT +A+ VA E GV F SG + G A + L R + Sbjct: 181 VLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEIYVGMGAKRVRELFSRAKMMAPSI 240 Query: 109 LFIDEI 114 +FIDEI Sbjct: 241 IFIDEI 246 >gi|116048695|ref|YP_792505.1| putative ATP-dependent protease [Pseudomonas aeruginosa UCBPP-PA14] gi|296390871|ref|ZP_06880346.1| putative ATP-dependent protease [Pseudomonas aeruginosa PAb1] gi|313105601|ref|ZP_07791867.1| putative ATP-dependent protease [Pseudomonas aeruginosa 39016] gi|115583916|gb|ABJ09931.1| probable ATP-dependent protease [Pseudomonas aeruginosa UCBPP-PA14] gi|310878369|gb|EFQ36963.1| putative ATP-dependent protease [Pseudomonas aeruginosa 39016] Length = 799 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 40/166 (24%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101 VL VGPPG+GKT++ + +A LG F R + G + +A G L L Sbjct: 379 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 438 Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148 +E + V+ +DEI +L + E L P D LDL + Sbjct: 439 EVEVMNPVIMLDEIDKLGASYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 487 Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 ++LS+ + + + PL DR + IRL+ Y E+ I +R Sbjct: 488 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYISEEKLAIAKR 532 >gi|313884430|ref|ZP_07818191.1| ATP-dependent metallopeptidase HflB [Eremococcus coleocola ACS-139-V-Col8] gi|312620214|gb|EFR31642.1| ATP-dependent metallopeptidase HflB [Eremococcus coleocola ACS-139-V-Col8] Length = 688 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E GV F S SG V A + L N + + Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEMFVGVGASRVRDLFENAKKAAPAI 283 Query: 109 LFIDEI 114 +FIDEI Sbjct: 284 IFIDEI 289 >gi|303239034|ref|ZP_07325564.1| Sigma 54 interacting domain protein [Acetivibrio cellulolyticus CD2] gi|302593372|gb|EFL63090.1| Sigma 54 interacting domain protein [Acetivibrio cellulolyticus CD2] Length = 559 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 RP TL+E GQ + L+ + + HVL GPPG+GKT A+V+ E N Sbjct: 63 RPSTLKEIVGQEQGLKALRAALCGPNPQ-----HVLIYGPPGVGKTAAARVILDEAKQND 117 Query: 83 RS 84 S Sbjct: 118 SS 119 >gi|295425666|ref|ZP_06818353.1| cell division protein FtsH [Lactobacillus amylolyticus DSM 11664] gi|295064682|gb|EFG55603.1| cell division protein FtsH [Lactobacillus amylolyticus DSM 11664] Length = 716 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108 VL GPPG GKT LA+ VA E V F S SG V A + L N + + Sbjct: 228 VLLEGPPGTGKTLLARAVAGEANVPFYSMSGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 287 Query: 109 LFIDEI 114 +FIDEI Sbjct: 288 IFIDEI 293 >gi|282857610|ref|ZP_06266828.1| AAA ATPase, CDC48 [Pyramidobacter piscolens W5455] gi|282584548|gb|EFB89898.1| AAA ATPase, CDC48 [Pyramidobacter piscolens W5455] Length = 710 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 10/92 (10%) Query: 9 SRNVSQEDADISLLRPR--TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVL 58 S +V E A I L+P+ T + G ++ IE EA VL Sbjct: 150 STDVVLERAQIGALKPKKITYADIGGLDAQLRRIREMIELPLKFPEAFVRLGVEPPKGVL 209 Query: 59 FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 GPPG GKT +A+ VA E F S SGP I Sbjct: 210 LYGPPGTGKTVIARAVANESDAWFTSISGPEI 241 >gi|294932355|ref|XP_002780231.1| replication factor C subunit, putative [Perkinsus marinus ATCC 50983] gi|239890153|gb|EER12026.1| replication factor C subunit, putative [Perkinsus marinus ATCC 50983] Length = 829 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 40/127 (31%) Query: 23 RPRTLEEFTGQVEACSNLKVFI-----------------------EAAKARAEALDHVLF 59 +PRTL++ G + L+ ++ E A+A VL Sbjct: 296 KPRTLKDLVGNNAPITKLRTWLQDWEKVHVHGQKKPVTFRGRGVPENVNAKA-----VLV 350 Query: 60 VGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAGDLAA-LLTN--------LEDRD 107 GPPG+GKTT ++VARELG + F ++ A +LA+ L TN L+ + Sbjct: 351 SGPPGIGKTTACRLVARELGYMPMEFNASDQRNKATVDNLASGLATNAVIGQNYSLKQKP 410 Query: 108 VLFIDEI 114 L +DE+ Sbjct: 411 CLVMDEV 417 >gi|254479231|ref|ZP_05092576.1| stage V sporulation protein K [Carboxydibrachium pacificum DSM 12653] gi|214034832|gb|EEB75561.1| stage V sporulation protein K [Carboxydibrachium pacificum DSM 12653] Length = 302 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 65/283 (22%) Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD------HVLFVGPPGLGKTTLAQV 73 SL+ ++E ++ A S L++ K + E L H++F G PG GKTT+A++ Sbjct: 47 SLIGLHKVKEIIYEIYAFSQLQM-----KRKKEGLATDPIVLHMIFKGNPGTGKTTVARI 101 Query: 74 VAREL-GVNFRSTSGPVIAKAGDLAA---------LLTNLEDR--DVLFIDEIHRLSIIV 121 + + L G+ V + DL + N++ +LF+DE + L+ Sbjct: 102 LGKLLKGIGVLEKGHVVEVERADLVGEYIGHTAHRVRENVKKALGGILFVDEAYSLA--- 158 Query: 122 EEILYPAMEDF---QLDLMVGEGPSARSVKINLSRFTLIAATTR----VGLLTNP-LQDR 173 +DF +D +V E R ++F LI A + L TNP L+ R Sbjct: 159 ----RGGEKDFGKEAIDTLVKEMEDNR------NKFILILAGYKHEMEYFLNTNPGLRSR 208 Query: 174 FGIPIRLNF--YEIEDLKTIVQRGAKLTGLAVTDEAACEI--------AMRSRGTPRIAG 223 F PI+++F Y IE+L I + K +T+ A ++ A R G R+ Sbjct: 209 F--PIQIDFPDYTIEELLQIAEVMVKNRQYKLTESAKRKLMKILIKNDASREMGNARM-- 264 Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266 VR+ E A K R + + + D + D +D+R Sbjct: 265 -----VRNIIEKAIRKQAVRVLNKVNITKE--DLITIDSIDIR 300 >gi|168010201|ref|XP_001757793.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691069|gb|EDQ77433.1| predicted protein [Physcomitrella patens subsp. patens] Length = 893 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 39/216 (18%) Query: 8 LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKV----FIEAAKARAEALDHVL-FVGP 62 L V+ E+ +I L+ + E+ + S +K ++ K + +A VL FVGP Sbjct: 354 LPWQVASEEREIDLVAAQ--EQLDSEHYGLSKVKKRIIEYLAVRKLKPDARGPVLCFVGP 411 Query: 63 PGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR----- 106 PG+GKT+LA +A LG F R + G V +A G + L + R Sbjct: 412 PGVGKTSLASSIAGALGRKFIRLSLGGVKDEADIRGHRRTYIGSMPGRLIDGIKRVGVNN 471 Query: 107 DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158 V+ +DEI + V E+L P D + +V ++S+ +A Sbjct: 472 PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYL-------NVPFDVSKVVFVA 524 Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 RV + PL DR + I L Y E+ I R Sbjct: 525 TANRVQTMPAPLLDRMEV-IELPGYTSEEKLRIAMR 559 >gi|156378275|ref|XP_001631069.1| predicted protein [Nematostella vectensis] gi|156218102|gb|EDO39006.1| predicted protein [Nematostella vectensis] Length = 573 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108 +L GP G GKT +A+ VA E GV+F +GP + L + T +++ + Sbjct: 64 ILLYGPSGTGKTMIARAVANETGVHFFCINGPEVLSRYYGETEARLREIFTEAQNKSPSI 123 Query: 109 LFIDEIHRLS 118 +FIDE+ L Sbjct: 124 VFIDELDALC 133 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 15/32 (46%), Positives = 21/32 (65%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88 +L GPPG KT +A+ +A E G+NF + GP Sbjct: 345 ILMYGPPGCSKTLIARALATESGLNFIAIKGP 376 >gi|78186575|ref|YP_374618.1| AAA ATPase, CDC48 [Chlorobium luteolum DSM 273] gi|78166477|gb|ABB23575.1| AAA ATPase, CDC48 [Chlorobium luteolum DSM 273] Length = 718 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108 V+ G PG GKT LA+ +A E GVNF S GP I KA L + Sbjct: 493 VILYGKPGTGKTWLAKALATESGVNFISVKGPEIISRFIGESEKAVRELFRLAKQSAPTI 552 Query: 109 LFIDEIHRLS 118 +F+DEI L+ Sbjct: 553 IFLDEIDSLA 562 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108 V GPPG GKT + + VARE F + SGP I G+ A + N+ + Sbjct: 218 VFLYGPPGTGKTLIVRAVARETDAYFINISGPEIMGKFYGESEARIRNIFAEAEAHAPSI 277 Query: 109 LFIDEIHRLS 118 +FIDEI ++ Sbjct: 278 IFIDEIDAIA 287 >gi|32266321|ref|NP_860353.1| membrane bound zinc metallopeptidase [Helicobacter hepaticus ATCC 51449] gi|32262371|gb|AAP77419.1| membrane bound zinc metallopeptidase [Helicobacter hepaticus ATCC 51449] Length = 611 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 21/31 (67%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 VL VGPPG GKT LA+ VA E V F S SG Sbjct: 186 VLLVGPPGTGKTLLAKAVAGEANVPFFSMSG 216 >gi|39996890|ref|NP_952841.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter sulfurreducens PCA] gi|61211572|sp|Q74C83|CLPX_GEOSL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|39983778|gb|AAR35168.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sulfurreducens PCA] Length = 417 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 29/128 (22%) Query: 20 SLLRPR----TLEEFT-GQVEACSNLKVFIEAAKARAEAL----------DHVLFVGPPG 64 L +PR L+E+ GQ +A L V + R E++ ++L +GP G Sbjct: 62 KLPKPREIKDVLDEYVIGQDQAKKVLAVAVYNHYKRIESMGKPSDVEMQKSNILLLGPTG 121 Query: 65 LGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------LF 110 GKT LAQ +AR L V F + +AG D+ ++ NL D DV ++ Sbjct: 122 SGKTLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILNLLQAADYDVERAQKGIIY 181 Query: 111 IDEIHRLS 118 IDEI +++ Sbjct: 182 IDEIDKIA 189 >gi|18422747|ref|NP_568675.1| LON2 (LON PROTEASE 2); ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase/ serine-type peptidase [Arabidopsis thaliana] gi|3914002|sp|O64948|LONP2_ARATH RecName: Full=Lon protease homolog 2, peroxisomal gi|2935279|gb|AAC05085.1| Lon protease [Arabidopsis thaliana] gi|9759446|dbj|BAB10243.1| mitochondrial Lon protease homolog 1 precursor [Arabidopsis thaliana] gi|332008077|gb|AED95460.1| ATP-dependent Lon protease [Arabidopsis thaliana] Length = 888 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 33/206 (16%) Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72 + + D+ + R + G + + ++ K + +A VL FVGPPG+GKT+LA Sbjct: 360 EHELDLKAAKERLDSDHYGLAKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLAS 419 Query: 73 VVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR-----DVLFIDEIHR 116 +A LG F R + G V +A G + L + R V+ +DEI + Sbjct: 420 SIAAALGRKFVRLSLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDK 479 Query: 117 LSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 V E+L P D + +V +LS+ +A RV + Sbjct: 480 TGSDVRGDPASALLEVLDPEQNKSFNDHYL-------NVPYDLSKVVFVATANRVQPIPP 532 Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL DR + I L Y E+ I R Sbjct: 533 PLLDRMEL-IELPGYTQEEKLKIAMR 557 >gi|14521830|ref|NP_127306.1| methanol dehydrogenase regulatory protein [Pyrococcus abyssi GE5] gi|5459050|emb|CAB50536.1| moxR-1 methanol dehydrogenase regulatory protein [Pyrococcus abyssi GE5] Length = 317 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 19/121 (15%) Query: 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS- 86 E F G+VE KVF A A +VLF PGLGKT LA+ A+ LG+N+R Sbjct: 14 EVFIGKVEVVR--KVF-----AAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQF 66 Query: 87 GPVIAKAGDLAALLTNLED-----------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 P + A + + E +VL DEI+R + L AME+ Q+ Sbjct: 67 TPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVT 126 Query: 136 L 136 + Sbjct: 127 I 127 >gi|87306773|ref|ZP_01088920.1| cell division protein FtsH [Blastopirellula marina DSM 3645] gi|87290952|gb|EAQ82839.1| cell division protein FtsH [Blastopirellula marina DSM 3645] Length = 356 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 24/37 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 VL VGPPG GKT LA+ +A E GV F S S +++ Sbjct: 242 VLLVGPPGTGKTLLAKAIAGEAGVTFFSLSALTLSRC 278 >gi|298242189|ref|ZP_06965996.1| transcriptional regulator, TrmB [Ktedonobacter racemifer DSM 44963] gi|297555243|gb|EFH89107.1| transcriptional regulator, TrmB [Ktedonobacter racemifer DSM 44963] Length = 1011 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 62/137 (45%), Gaps = 35/137 (25%) Query: 26 TLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVV-ARELGV 80 + E G E LKV I+ AKA L H L GP G+GKTTLA+++ + L Sbjct: 136 SFETMIGHHEG---LKVAIQQAKAAILYPPRGL-HTLLYGPSGVGKTTLARLMHSFALEH 191 Query: 81 NFRSTSGPVIA-----KAGDLAALLTNL----------EDRD-----------VLFIDEI 114 N S P I+ AG+ L+ +L DRD +LF+DE+ Sbjct: 192 NAFSPDAPFISFNCADYAGNPQLLMGHLFGVVKGAYTGADRDRAGLVEQAHRGILFLDEV 251 Query: 115 HRLSIIVEEILYPAMED 131 HRL +E+L+ M+ Sbjct: 252 HRLPPEGQEMLFYLMDQ 268 >gi|240125888|ref|ZP_04738774.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae SK-92-679] gi|268684487|ref|ZP_06151349.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae SK-92-679] gi|268624771|gb|EEZ57171.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae SK-92-679] Length = 414 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV 108 ++L +GP G GKT LAQ +AR+L V F + +AG D+ ++T L D DV Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173 Query: 109 -------LFIDEIHRLS 118 ++IDEI ++S Sbjct: 174 EKARHGIVYIDEIDKIS 190 >gi|212709198|ref|ZP_03317326.1| hypothetical protein PROVALCAL_00231 [Providencia alcalifaciens DSM 30120] gi|212688110|gb|EEB47638.1| hypothetical protein PROVALCAL_00231 [Providencia alcalifaciens DSM 30120] Length = 425 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103 ++L +GP G GKT LA+ +AR L V F + +AG + + N+ Sbjct: 115 NILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174 Query: 104 --EDRDVLFIDEIHRLS 118 R +++IDEI ++S Sbjct: 175 EKAQRGIVYIDEIDKIS 191 >gi|168186117|ref|ZP_02620752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum C str. Eklund] gi|169296071|gb|EDS78204.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum C str. Eklund] Length = 431 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 110 NILLLGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDI 169 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 170 EKAERGIIYIDEIDKIA 186 >gi|124028210|ref|YP_001013530.1| ATP-dependent protease [Hyperthermus butylicus DSM 5456] gi|123978904|gb|ABM81185.1| ATP-dependent protease [Hyperthermus butylicus DSM 5456] Length = 736 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG GKT LA+ A E G NF + GP I Sbjct: 495 ILLFGPPGTGKTLLAKAAATESGANFIAVRGPEI 528 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 +L GPPG+GKT LA+ +A E F + +GP I Sbjct: 222 ILLYGPPGVGKTLLAKAIANETNAYFIAINGPEI 255 >gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio] gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio] Length = 358 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 + RP+ ++E Q E + LK +E A L ++LF GPPG GKT+ AREL Sbjct: 36 VEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 90 >gi|73987072|ref|XP_854391.1| PREDICTED: similar to Lon protease homolog, mitochondrial precursor (Lon protease-like protein) (LONP) (LONHs) isoform 1 [Canis familiaris] Length = 960 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%) Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71 S E+ D++ + E+ G + + FI ++ R +L F GPPG+GKT++A Sbjct: 475 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 534 Query: 72 QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115 + +AR L FR + G V A G + L + + ++ IDE+ Sbjct: 535 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 594 Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 ++ S + E+L P LD + V ++LS+ I + Sbjct: 595 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTETIP 647 Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194 PL+DR + I ++ Y ++ I +R Sbjct: 648 EPLRDRMEM-INVSGYVAQEKLAIAER 673 >gi|120556298|ref|YP_960649.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8] gi|120326147|gb|ABM20462.1| membrane protease FtsH catalytic subunit [Marinobacter aquaeolei VT8] Length = 624 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108 VL VGPPG GKT LA+ VA E V F S SG + G AA + +L ++ + Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEMFVGVGAARVRDLFEQARAQAPAI 252 Query: 109 LFIDEIHRL 117 +FIDE+ L Sbjct: 253 IFIDELDAL 261 >gi|82705588|ref|XP_727032.1| cell division protein [Plasmodium yoelii yoelii str. 17XNL] gi|23482685|gb|EAA18597.1| cell division protein [Plasmodium yoelii yoelii] Length = 1110 Score = 39.7 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 14/80 (17%) Query: 54 LDH-----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTN 102 +DH +LF G G GKT LA+ +A EL +F SG + A + L N Sbjct: 577 IDHPLNSCILFTGETGTGKTLLAKTIANELDADFMHVSGSSFIELYIGNGASKIRNLFKN 636 Query: 103 LEDRD---VLFIDEIHRLSI 119 ++ V+FIDEI + I Sbjct: 637 AQNNKNPVVIFIDEIDSIGI 656 >gi|331270304|ref|YP_004396796.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum BKT015925] gi|329126854|gb|AEB76799.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum BKT015925] Length = 431 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103 ++L +GP G GKT LAQ +AR L V F + +AG D+ +L L Sbjct: 110 NILLLGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDV 169 Query: 104 --EDRDVLFIDEIHRLS 118 +R +++IDEI +++ Sbjct: 170 EKAERGIIYIDEIDKIA 186 >gi|317507802|ref|ZP_07965504.1| ATP-dependent metallopeptidase HflB [Segniliparus rugosus ATCC BAA-974] gi|316253921|gb|EFV13289.1| ATP-dependent metallopeptidase HflB [Segniliparus rugosus ATCC BAA-974] Length = 694 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 34