RPSBLAST alignment for GI: 254780552 and conserved domain: TIGR01243

>gnl|CDD|162267 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  EA   ++  +E      E  +H        VL  GPPG GKT LA+ VA E
Sbjct: 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124
            G  F S +GP I           L  +    E+    ++FIDEI  ++   EE+
Sbjct: 236 AGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV 290