HHsearch alignment for GI: 254780553 and conserved domain: PRK00116

>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed.
Probab=100.00  E-value=0  Score=412.10  Aligned_cols=196  Identities=37%  Similarity=0.567  Sum_probs=179.8

Q ss_pred             CCCEEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf             93258999999609979998588323897086889850247984999999997388418999706779999999850100
Q gi|254780553|r    1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG   80 (207)
Q Consensus         1 MI~~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~~~~Er~~F~~Li~V~G   80 (207)
T Consensus         1 MI~~i~G~i~~~~~~~iil~v~GvGY~v~v~~~~~~~l~~~g~~~~l~~~~~vrEd~~~LyGF~~~~Er~~F~~Li~V~G   80 (198)
T PRK00116          1 MIGYLRGILTEKGPDYVVIEVNGVGYEVQVPMRTLYELPEVGEEVKLYTHLVVREDAQLLYGFLTKEERELFRLLISVSG   80 (198)
T ss_pred             CCCEEEEEEEEEECCEEEEEECCEEEEEEECHHHHHHCCCCCCEEEEEEEEEEECCCCEEEEECCHHHHHHHHHHHCCCC
T ss_conf             94479999999619989999799889999168999862468983999999998068875784088899999999856688


Q ss_pred             CCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             05101124431578999999985156687510457116799999999742221101133443233333445555653158
Q gi|254780553|r   81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA  160 (207)
Q Consensus        81 IGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
T Consensus        81 IGpK~AL~ILs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~ELk~K~~~~~~~~~~~~-------~~~~~~~~~~  153 (198)
T PRK00116         81 VGPKLALAILSGLSPEELAQAIANGDIKALTKVPGVGKKTAERIVLELKDKLAALADAGAAAA-------AAASAANDAL  153 (198)
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCHH
T ss_conf             578999988702999999999985899997068897889999999999988874212455454-------5667775259


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf             9999999967999899999999998516888898999999999745
Q gi|254780553|r  161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS  206 (207)
Q Consensus       161 ~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~aLk~Ls  206 (207)
T Consensus       154 ~d~~~AL~~LGy~~~ea~~ai~~i~~~---~~~~eelIk~aLk~Ls  196 (198)
T PRK00116        154 EEAVSALVALGYKPKEAQKAVAAILKE---GASVEELIREALKLLS  196 (198)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHC
T ss_conf             999999998599999999999986436---9999999999999972