HHsearch alignment for GI: 254780553 and conserved domain: PRK00116
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed.
Probab=100.00 E-value=0 Score=412.10 Aligned_cols=196 Identities=37% Similarity=0.567 Sum_probs=179.8
Q ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 93258999999609979998588323897086889850247984999999997388418999706779999999850100
Q gi|254780553|r 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 (207)
Q Consensus 1 MI~~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~~~~Er~~F~~Li~V~G 80 (207)
T Consensus 1 MI~~i~G~i~~~~~~~iil~v~GvGY~v~v~~~~~~~l~~~g~~~~l~~~~~vrEd~~~LyGF~~~~Er~~F~~Li~V~G 80 (198)
T PRK00116 1 MIGYLRGILTEKGPDYVVIEVNGVGYEVQVPMRTLYELPEVGEEVKLYTHLVVREDAQLLYGFLTKEERELFRLLISVSG 80 (198)
T ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEEECHHHHHHCCCCCCEEEEEEEEEEECCCCEEEEECCHHHHHHHHHHHCCCC
T ss_conf 94479999999619989999799889999168999862468983999999998068875784088899999999856688
Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 05101124431578999999985156687510457116799999999742221101133443233333445555653158
Q gi|254780553|r 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA 160 (207)
Q Consensus 81 IGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
T Consensus 81 IGpK~AL~ILs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~ELk~K~~~~~~~~~~~~-------~~~~~~~~~~ 153 (198)
T PRK00116 81 VGPKLALAILSGLSPEELAQAIANGDIKALTKVPGVGKKTAERIVLELKDKLAALADAGAAAA-------AAASAANDAL 153 (198)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCHH
T ss_conf 578999988702999999999985899997068897889999999999988874212455454-------5667775259
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 9999999967999899999999998516888898999999999745
Q gi|254780553|r 161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 (207)
Q Consensus 161 ~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~aLk~Ls 206 (207)
T Consensus 154 ~d~~~AL~~LGy~~~ea~~ai~~i~~~---~~~~eelIk~aLk~Ls 196 (198)
T PRK00116 154 EEAVSALVALGYKPKEAQKAVAAILKE---GASVEELIREALKLLS 196 (198)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHC
T ss_conf 999999998599999999999986436---9999999999999972