HHsearch alignment for GI: 254780553 and conserved domain: PRK13901
>PRK13901 ruvA Holliday junction DNA helicase motor protein; Provisional.
Probab=100.00 E-value=0 Score=402.67 Aligned_cols=191 Identities=25% Similarity=0.393 Sum_probs=173.6
Q ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 93258999999609979998588323897086889850247984999999997388418999706779999999850100
Q gi|254780553|r 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 (207)
Q Consensus 1 MI~~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~~~~Er~~F~~Li~V~G 80 (207)
T Consensus 1 MI~~l~G~i~~~~~~~vvl~v~GvGY~V~vs~~~~~~l-~~~~~v~l~t~~~vrEd~~~LyGF~~~~Er~~F~~LisVsG 79 (196)
T PRK13901 1 MINKIYGKIIEKKESSIVIMATPFEFELLVSSFCLAEL-RLLEDVEILTYLHTREDELKLFGFLNSSEREVFEELIGVDG 79 (196)
T ss_pred CCCEEEEEEEEECCCEEEEEECCEEEEEEECHHHHHHC-CCCCEEEEEEEEEEEECCCEEECCCCHHHHHHHHHHHCCCC
T ss_conf 95479999999629979999348799999678999765-89980899999999516771336598899999999876588
Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 05101124431578999999985156687510457116799999999742221101133443233333445555653158
Q gi|254780553|r 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA 160 (207)
Q Consensus 81 IGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
T Consensus 80 IGpk~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~ELk~Kl~~~~~~~---------------~~~~~~ 144 (196)
T PRK13901 80 IGPRAALRVLSGIKYNEFRDAIDREDIELISKVKGIGNKMAGKIFLKLRGKLVKNDELE---------------SSLFKF 144 (196)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------CCCCCH
T ss_conf 26899999975799999999999289999831999589999999999976531566556---------------553448
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHCC
Q ss_conf 999999996799989999999999851688-----88989999999997459
Q gi|254780553|r 161 INAISALVNLGYGQDQATTAVVSVLKKEKN-----IADDSQIIRLALRAISC 207 (207)
Q Consensus 161 ~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~-----~~~~eelIk~aLk~Ls~ 207 (207)
T Consensus 145 ~e~~~AL~~LGy~~~~a~~al~~i~~~~~~~~~~~~~~~e~likeaLK~Ls~ 196 (196)
T PRK13901 145 KELEQSIVNMGFDRKLVNSAIKEIMLLDEFLNLKDSEQEQFLFKEVLKRLSN 196 (196)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999999984999899999999998508456778504289999999998539