HHsearch alignment for GI: 254780553 and conserved domain: PRK13901

>PRK13901 ruvA Holliday junction DNA helicase motor protein; Provisional.
Probab=100.00  E-value=0  Score=402.67  Aligned_cols=191  Identities=25%  Similarity=0.393  Sum_probs=173.6

Q ss_pred             CCCEEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf             93258999999609979998588323897086889850247984999999997388418999706779999999850100
Q gi|254780553|r    1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG   80 (207)
Q Consensus         1 MI~~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~~~~Er~~F~~Li~V~G   80 (207)
T Consensus         1 MI~~l~G~i~~~~~~~vvl~v~GvGY~V~vs~~~~~~l-~~~~~v~l~t~~~vrEd~~~LyGF~~~~Er~~F~~LisVsG   79 (196)
T PRK13901          1 MINKIYGKIIEKKESSIVIMATPFEFELLVSSFCLAEL-RLLEDVEILTYLHTREDELKLFGFLNSSEREVFEELIGVDG   79 (196)
T ss_pred             CCCEEEEEEEEECCCEEEEEECCEEEEEEECHHHHHHC-CCCCEEEEEEEEEEEECCCEEECCCCHHHHHHHHHHHCCCC
T ss_conf             95479999999629979999348799999678999765-89980899999999516771336598899999999876588


Q ss_pred             CCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             05101124431578999999985156687510457116799999999742221101133443233333445555653158
Q gi|254780553|r   81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA  160 (207)
Q Consensus        81 IGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
T Consensus        80 IGpk~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~ELk~Kl~~~~~~~---------------~~~~~~  144 (196)
T PRK13901         80 IGPRAALRVLSGIKYNEFRDAIDREDIELISKVKGIGNKMAGKIFLKLRGKLVKNDELE---------------SSLFKF  144 (196)
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------CCCCCH
T ss_conf             26899999975799999999999289999831999589999999999976531566556---------------553448


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHCC
Q ss_conf             999999996799989999999999851688-----88989999999997459
Q gi|254780553|r  161 INAISALVNLGYGQDQATTAVVSVLKKEKN-----IADDSQIIRLALRAISC  207 (207)
Q Consensus       161 ~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~-----~~~~eelIk~aLk~Ls~  207 (207)
T Consensus       145 ~e~~~AL~~LGy~~~~a~~al~~i~~~~~~~~~~~~~~~e~likeaLK~Ls~  196 (196)
T PRK13901        145 KELEQSIVNMGFDRKLVNSAIKEIMLLDEFLNLKDSEQEQFLFKEVLKRLSN  196 (196)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             9999999984999899999999998508456778504289999999998539