HHsearch alignment for GI: 254780553 and conserved domain: TIGR03674
>TIGR03674 fen_arch flap structure-specific endonuclease. Endonuclease that cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA
Probab=92.89 E-value=0.18 Score=30.44 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=45.7
Q ss_pred CCHHHHHHH-HHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC--------CCCC---CCCCCCCCCCHH
Q ss_conf 789999999-8515668751045711679999999974222110113344323--------3333---445555653158
Q gi|254780553|r 93 ITATELVES-IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMS--------CVNK---EQAHICSMPSFA 160 (207)
Q Consensus 93 l~~~~l~~a-I~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~ 160 (207)
T Consensus 221 lt~eqfidlcIL~G-cDY~~gI~GIG~k~A~klIkk~~~-ie~i~~~~~~~~~~~~~~r~lF~~p~v~d~~~~~~~~pd~ 298 (338)
T TIGR03674 221 ITREQLIDIAILVG-TDYNEGVKGIGPKTALKLIKEHGD-LEKVLKARGEDIENYDEIREFFLNPPVTDDYELKWRKPDK 298 (338)
T ss_pred CCHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHCC-HHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf 99999999999708-756789998568999999998599-9999986568877899999984899989877776799998
Q ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHH
Q ss_conf 999999996-799989999999999851
Q gi|254780553|r 161 INAISALVN-LGYGQDQATTAVVSVLKK 187 (207)
Q Consensus 161 ~d~~~AL~~-LGy~~~ea~~ai~~i~~~ 187 (207)
T Consensus 299 e~l~~fL~~e~~fse~RV~~~i~kl~k~ 326 (338)
T TIGR03674 299 EGIIEFLCDEHDFSEDRVERALERLEAA 326 (338)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9999995535597999999999999976