HHsearch alignment for GI: 254780553 and conserved domain: pfam00730
>pfam00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein. This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific adenine glycosylase, both have a C terminal 4Fe-4S cluster. The family also includes 8-oxoguanine DNA glycosylases. The methyl-CPG binding protein MBD4 also contains a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other members of the AlkA family.
Probab=90.54 E-value=0.56 Score=27.17 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=32.8
Q ss_pred EEEEEECHHH-----HHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHC----------CCHHHHHHCCCCCHHHHHH
Q ss_conf 8999706779-----999999850100051011244315789999999851----------5668751045711679999
Q gi|254780553|r 59 RLFGFLSDLD-----RQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL----------QNSKVIAQIPGISMKIASR 123 (207)
Q Consensus 59 ~LyGF~~~~E-----r~~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~----------~D~~~L~~vpGIGkKtA~r 123 (207)
T Consensus 23 ~~~~~pt~~~l~~~~~~~l~~~i~~~G~~~~Ka~~I~~------~a~~~~~~~~~~~~~~~~~~~~L~~l~GIG~~ta~~ 96 (144)
T pfam00730 23 ERYGFPTPEDLAEADEEELRELIKGLGFYRRKAKYIKE------LARILVEGYLGLVPLDLEELEALLALPGVGRWTAEA 96 (144)
T ss_pred HHHCCCCHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 98289899999859999999998708976999999999------998889862897886115699986088976999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780553|r 124 IMTE 127 (207)
Q Consensus 124 Ii~E 127 (207)
T Consensus 97 ~l~~ 100 (144)
T pfam00730 97 VLLF 100 (144)
T ss_pred HHHH
T ss_conf 9999