HHsearch alignment for GI: 254780553 and conserved domain: smart00278
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1.
Probab=90.84 E-value=0.1 Score=32.08 Aligned_cols=21 Identities=29% Similarity=0.557 Sum_probs=15.8
Q ss_pred HHHHCCCCCHHHHHHHHHHHH
Q ss_conf 751045711679999999974
Q gi|254780553|r 109 VIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 109 ~L~~vpGIGkKtA~rIi~ELk 129 (207)
T Consensus 2 ~L~~v~GIG~k~A~~ll~~~~ 22 (26)
T smart00278 2 ELLKVPGIGPKTAEKILEAXX 22 (26)
T ss_pred CCCCCCCCCCHHHHHHHHHHH
T ss_conf 210179988115999999762