HHsearch alignment for GI: 254780553 and conserved domain: smart00278

>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1.
Probab=90.84  E-value=0.1  Score=32.08  Aligned_cols=21  Identities=29%  Similarity=0.557  Sum_probs=15.8

Q ss_pred             HHHHCCCCCHHHHHHHHHHHH
Q ss_conf             751045711679999999974
Q gi|254780553|r  109 VIAQIPGISMKIASRIMTELK  129 (207)
Q Consensus       109 ~L~~vpGIGkKtA~rIi~ELk  129 (207)
T Consensus         2 ~L~~v~GIG~k~A~~ll~~~~   22 (26)
T smart00278        2 ELLKVPGIGPKTAEKILEAXX   22 (26)
T ss_pred             CCCCCCCCCCHHHHHHHHHHH
T ss_conf             210179988115999999762