HHsearch alignment of GI: 254780553 and MMDB domain: 1ixr_A_
>1ixr_A (A:) Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus}
Probab=92.44 E-value=0.29 Score=28.66 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=36.1
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Q ss_conf 6875104571167999999997422211011334432333334455556531589999999967-999899999999998
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQATTAVVSVL 185 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~L-Gy~~~ea~~ai~~i~ 185 (207)
-..|.+|||||+|+|.+|+-.+.-.- +...+.. .-..+|..+ |-.++-|++.+....
T Consensus 71 F~~L~~V~GIGpk~Al~iL~~~~~~e--l~~aI~~--------------------~d~~~L~~ipGIG~KtA~rIi~eLk 128 (191)
T 1ixr_A 71 FELLLSVSGVGPKVALALLSALPPRL--LARALLE--------------------GDARLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHHHHSSSCCCHHHHHHHHHHSCHHH--HHHHHHT--------------------TCHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHHHHHHHHHCCCHHH--HHHHHHC--------------------CCHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99985758847788999985599999--9999982--------------------8999851388845688999999998
Q ss_pred HHC
Q ss_conf 516
Q gi|254780553|r 186 KKE 188 (207)
Q Consensus 186 ~~~ 188 (207)
.+.
T Consensus 129 ~k~ 131 (191)
T 1ixr_A 129 GKV 131 (191)
T ss_dssp TTS
T ss_pred HHC
T ss_conf 642