HHsearch alignment of GI: 254780553 and MMDB domain: 1jms_A_1-154

>1jms_A (A:1-154) Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus}
Probab=95.84  E-value=0.0044  Score=40.79  Aligned_cols=88  Identities=17%  Similarity=0.131  Sum_probs=42.5

Q ss_pred             CHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             101124431578999999985156687510457116799999999742-2211011334432333334455556531589
Q gi|254780553|r   83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG-KAISLSSVVQQDMSCVNKEQAHICSMPSFAI  161 (207)
Q Consensus        83 pK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~-K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      -+.|...|..++..       -.+...+.++||||+++|++|.--|.. ++..+....                 .+...
T Consensus        62 Yr~Aa~~l~~~p~~-------I~s~~~l~~lpgIG~~ia~~I~E~l~tG~l~~le~l~-----------------~~~~~  117 (154)
T 1jms_A           62 FMRASSVLKSLPFP-------ITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVL-----------------NDERY  117 (154)
T ss_dssp             HHHHHHHHHTCSSC-------CCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHH-----------------HCHHH
T ss_pred             HHHHHHHHHHCCCC-------CCCHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHH-----------------HCCCC
T ss_conf             99999999859977-------7999998379996499999999999969889899987-----------------26653


Q ss_pred             HHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             99999996-7999899999999998516888898999999
Q gi|254780553|r  162 NAISALVN-LGYGQDQATTAVVSVLKKEKNIADDSQIIRL  200 (207)
Q Consensus       162 d~~~AL~~-LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~  200 (207)
                      .++.-|.. .|-.++-|++...      ....+.+++.+.
T Consensus       118 ~~~~~l~~i~GiGp~~a~~~~~------~Gi~sl~dL~~a  151 (154)
T 1jms_A          118 KSFKLFTSVFGVGLKTAEKWFR------MGFRTLSKIQSD  151 (154)
T ss_dssp             HHHHHHHTSTTCCHHHHHHHHH------TTCCSHHHHHHC
T ss_pred             HHHHHHHHCCCCCHHHHHHHHH------CCCCCHHHHHHH
T ss_conf             0788888567879999999998------598889999874