HHsearch alignment of GI: 254780553 and MMDB domain: 1jms_A_1-154
>1jms_A (A:1-154) Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus}
Probab=95.84 E-value=0.0044 Score=40.79 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=42.5
Q ss_pred CHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 101124431578999999985156687510457116799999999742-2211011334432333334455556531589
Q gi|254780553|r 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG-KAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161 (207)
Q Consensus 83 pK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~-K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
-+.|...|..++.. -.+...+.++||||+++|++|.--|.. ++..+.... .+...
T Consensus 62 Yr~Aa~~l~~~p~~-------I~s~~~l~~lpgIG~~ia~~I~E~l~tG~l~~le~l~-----------------~~~~~ 117 (154)
T 1jms_A 62 FMRASSVLKSLPFP-------ITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVL-----------------NDERY 117 (154)
T ss_dssp HHHHHHHHHTCSSC-------CCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHH-----------------HCHHH
T ss_pred HHHHHHHHHHCCCC-------CCCHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHH-----------------HCCCC
T ss_conf 99999999859977-------7999998379996499999999999969889899987-----------------26653
Q ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99999996-7999899999999998516888898999999
Q gi|254780553|r 162 NAISALVN-LGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 (207)
Q Consensus 162 d~~~AL~~-LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~ 200 (207)
.++.-|.. .|-.++-|++... ....+.+++.+.
T Consensus 118 ~~~~~l~~i~GiGp~~a~~~~~------~Gi~sl~dL~~a 151 (154)
T 1jms_A 118 KSFKLFTSVFGVGLKTAEKWFR------MGFRTLSKIQSD 151 (154)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHH------TTCCSHHHHHHC
T ss_pred HHHHHHHHCCCCCHHHHHHHHH------CCCCCHHHHHHH
T ss_conf 0788888567879999999998------598889999874