HHSEARCH alignment of GI: 254780553 and SCOP domain: d1pzna1

Alignment
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=97.73  E-value=6.2e-06  Score=57.18  Aligned_cols=56  Identities=21%  Similarity=0.337  Sum_probs=48.1

Q ss_pred             HHHHHHHCCCHHHHHHHCC-CCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9850100051011244315-7899999998515668751045711679999999974222
Q gi|254780553|r   74 LLQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA  132 (207)
Q Consensus        74 ~Li~V~GIGpK~AL~iLs~-l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~  132 (207)
                      .|.+|+||||+.|-.+++. +..   +..|.+.+...|.++||||+++|++|+-..++++
T Consensus         2 ~L~~i~GIG~~~a~~L~~~g~~s---v~~l~~a~~~eL~~i~Gi~~~~A~~i~~~ar~~~   58 (61)
T d1pzna1           2 SIEDLPGVGPATAEKLREAGYDT---LEAIAVASPIELKEVAGISEGTALKIIQAARKAA   58 (61)
T ss_dssp             CSSCCTTCCHHHHHHHHTTTCCS---HHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCC---HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf             50217997999999999944999---9999859999997779999999999999999872


SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]