HHSEARCH alignment of GI: 254780553 and SCOP domain: d1ul1x1

Alignment
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.56  E-value=0.023  Score=33.45  Aligned_cols=94  Identities=12%  Similarity=0.219  Sum_probs=43.1

Q ss_pred             HHHHCCCHHHHHHHCCC-CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             01000510112443157-89999999851566875104571167999999997422211011334432333334455556
Q gi|254780553|r   77 SVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS  155 (207)
Q Consensus        77 ~V~GIGpK~AL~iLs~l-~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~  155 (207)
                      +|.|||||+|+.+|..+ +.+.++..+   |.......+.. ...+.+.++ ++..+..             ........
T Consensus        20 gv~gIG~ktA~kli~~~~~le~i~~~~---~~~~~~~~~~~-~~~~~~~~~-~~~~v~~-------------~~~~~l~~   81 (140)
T d1ul1x1          20 SIRGIGPKRAVDLIQKHKSIEEIVRRL---DPNKYPVPENW-LHKEAHQLF-LEPEVLD-------------PESVELKW   81 (140)
T ss_dssp             CCTTCCHHHHHHHHHHSSSHHHHHTTC---CCTTSCCCSSC-CHHHHHHHH-HSCCCCC-------------GGGCCCCC
T ss_pred             CCCCCCHHHHHHHHHHHCCHHHHHHHH---HHHCCCCCHHH-HHHHHHHHH-CCCCCCC-------------CCCCCCCC
T ss_conf             999823999999999939999999999---98432111003-368999997-6996689-------------98778775


Q ss_pred             CCCHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHC
Q ss_conf             531589999999-967999899999999998516
Q gi|254780553|r  156 MPSFAINAISAL-VNLGYGQDQATTAVVSVLKKE  188 (207)
Q Consensus       156 ~~~~~~d~~~AL-~~LGy~~~ea~~ai~~i~~~~  188 (207)
                      .....+++...| ..++|.+.....++..+.+..
T Consensus        82 ~~~d~~~l~~~l~~~~~f~~~~~~~~l~~l~~~~  115 (140)
T d1ul1x1          82 SEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSR  115 (140)
T ss_dssp             CCCCHHHHHHHTTTTSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             9999999999999984889999999999999886


SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: 5' to 3' exonuclease, C-terminal subdomain
family: 5' to 3' exonuclease, C-terminal subdomain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Human (Homo sapiens) [TaxId: 9606]