HHSEARCH alignment of GI: 254780553 and SCOP domain: d2i1qa1

Alignment
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=92.90  E-value=0.044  Score=31.51  Aligned_cols=51  Identities=12%  Similarity=0.367  Sum_probs=30.4

Q ss_pred             HHHCCCCCHHHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Q ss_conf             510457116799999999-742221101133443233333445555653158999999996-7999899999999998
Q gi|254780553|r  110 IAQIPGISMKIASRIMTE-LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQDQATTAVVSVL  185 (207)
Q Consensus       110 L~~vpGIGkKtA~rIi~E-Lk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~-LGy~~~ea~~ai~~i~  185 (207)
                      |+.+||||+++|+|+.-. ... +.++....                        .+-|.. =|++++.|++.+..+.
T Consensus         1 L~~IpGIG~~~a~~L~~~G~~t-v~~l~~a~------------------------~eeL~~i~Gi~~~~A~~i~~~ar   53 (60)
T d2i1qa1           1 LTDLPGVGPSTAEKLVEAGYID-FMKIATAT------------------------VGELTDIEGISEKAAAKMIMGAR   53 (60)
T ss_dssp             CTTSTTCCHHHHHHHHHHTCCS-HHHHHTCC------------------------HHHHHTSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHCCCCC-HHHHHHCC------------------------HHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             9788898999999999836999-99998599------------------------99998778989999999999999


SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Methanococcus voltae [TaxId: 2188]