RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter asiaticus str. psy62] (207 letters) >gnl|CDD|178876 PRK00116, ruvA, Holliday junction DNA helicase RuvA; Reviewed. Length = 192 Score = 198 bits (506), Expect = 9e-52 Identities = 76/206 (36%), Positives = 117/206 (56%), Gaps = 14/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG + DYV+I+V GV Y + P+RTL L ++G+ L+ +R+D I L Sbjct: 1 MIGYLKGKLVEKGPDYVVIEVNGVGYEVQVPMRTLYELPEVGEEVKLYTHLVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R+ F LL SV GVG ++A+ +LS ++ ELV++I + K + ++PGI K Sbjct: 61 YGFLTKEERELFRLLISVSGVGPKLALAILSGLSPEELVQAIANGDVKALTKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + +S + S A+SALV LGY +A+ A Sbjct: 121 AERIVLELKDKLAAAASAAAAAA-----------AASSALEEAVSALVALGYKPKEASKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +LK+ A ++IR AL+ +S Sbjct: 170 VAKILKEA---ASVEELIREALKLLS 192 >gnl|CDD|184760 PRK14604, ruvA, Holliday junction DNA helicase RuvA; Provisional. Length = 195 Score = 118 bits (298), Expect = 1e-27 Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I+ + D+++++ GV +IY P L+ +G IGD L+ +R+D + L Sbjct: 1 MIASIRGIIQSIGNDHLIVETGGVGLLIYAPRSVLAAIGAIGDEVFLYTHLIVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + RQ F LL V GVG + A+ +LS T EL +I + +A++PGI K Sbjct: 61 YGFSTPAQRQLFELLIGVSGVGPKAALNLLSSGTPDELQLAIAGGDVARLARVPGIGKKT 120 Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI+ ELKGK LS +S +++E L++LGY +A Sbjct: 121 AERIVLELKGKIDVRQLSGSTSPAVSALDRE-------------LSEILISLGYSAAEAA 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 A+ + L + D + +RLALR Sbjct: 168 AAIAA-LPSDAP-PDLEERLRLALR 190 >gnl|CDD|173066 PRK14602, ruvA, Holliday junction DNA helicase RuvA; Provisional. Length = 203 Score = 112 bits (283), Expect = 5e-26 Identities = 60/207 (28%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + E+ V++ GV Y ++ P TL+ L + G + FV T +R+D + Sbjct: 1 MIAYLEGRVAERRENSCVVLTPGGVGYEVFLPAHTLARLPEKGGQVSFFVHTVVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +RQ F++L S+ VGA+ A+ +LS+ +L + ++ + ++ GI K Sbjct: 61 LFGFATWDERQTFIVLISISKVGAKTALAILSQFRPDDLRRLVAEEDVAALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I ELK K + + + S +A++ L NLGYG+++A Sbjct: 121 TAQHIFLELKYK------LKVEGLPAAAVLAGTGAVPGSVFRDALAGLANLGYGEEEARP 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + VL++E ++ D +R AL+A++ Sbjct: 175 VLKEVLEEEPDL-DVGGALRAALKALA 200 >gnl|CDD|173064 PRK14600, ruvA, Holliday junction DNA helicase RuvA; Provisional. Length = 186 Score = 109 bits (275), Expect = 5e-25 Identities = 65/207 (31%), Positives = 113/207 (54%), Gaps = 23/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLS-CLGKIGDFCTLFVETHMRQDQI- 58 MIG + G +E + DY++++V V YI+Y + LS C KIGD L++ET++ +D + Sbjct: 1 MIGSLSGIVEEVRSDYIILNVGNVGYIVYLSAKVLSTC--KIGDNIKLYIETYVNRDNVT 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GFL+ ++ +L V GV + AM +LS++T +L S I+ K ++ GI Sbjct: 59 QLYGFLNREEQDCLRMLVKVSGVNYKTAMSILSKLTPEQLF-SAIVNEDKAALKVNGIGE 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ +RI+TEL+ K V+K + + + +A++AL++LGY + Sbjct: 118 KLINRIITELQYK--------------VSKLEINETNFIIINDDALAALISLGYEK---- 159 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 T + ++K K IIR AL+ + Sbjct: 160 TKAFNAIQKIKPNLSTQDIIRKALKEL 186 >gnl|CDD|184761 PRK14605, ruvA, Holliday junction DNA helicase RuvA; Provisional. Length = 194 Score = 104 bits (260), Expect = 2e-23 Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E +D+ +I+V GV + Y P + + +G +G +F H+R+D + L Sbjct: 1 MISSLNGILEASGKDWAVINVSGVGFRCYMPATSPALIGGLGQRVRVFTHLHVREDALSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L V G+G ++ + +LS + A L +II N+++++ IPGI K Sbjct: 61 FGFATTEELSLFETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNAELLSTIPGIGKKT 120 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 ASRI+ ELK K A + + V ++ N + ++ L LGY +A Sbjct: 121 ASRIVLELKDKIAKNWEAGVLSQVTEANSD-------------ILATLTALGYSSSEAAK 167 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ S+ ++ I+LAL + Sbjct: 168 AISSLGDNGDLPLEER--IKLALNYFN 192 >gnl|CDD|129193 TIGR00084, ruvA, Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. Length = 191 Score = 103 bits (260), Expect = 2e-23 Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 15/204 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + + ++I+V GV Y + P+ L + +F +R+D L Sbjct: 1 MIGFLFGKVIEVSKPKIIIEVNGVGYELQVPMTCAYEL-NLEQKAQVFTHLVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V GVG ++A+ +LS ++ E V +I + K + +IPG+ K Sbjct: 60 FGFNTLEERELFKELIKVNGVGPKLALAILSNMSPEEFVYAIETEEVKALVKIPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK L +M + + ALV+LGY + A Sbjct: 120 AERLLLELKGK---LKGNKNLEMFTPTE---------AARDELFEALVSLGYKPQEIQQA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + K K Q I AL+ Sbjct: 168 LKKI--KNKPDFAIEQDIEEALKQ 189 >gnl|CDD|184759 PRK14603, ruvA, Holliday junction DNA helicase RuvA; Provisional. Length = 197 Score = 86.0 bits (213), Expect = 7e-18 Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 17/209 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHMRQDQI 58 MI + G + E ++ GV + CP TL+ L G+ + T V +R+D + Sbjct: 1 MIAYLSGVVLEKREGSAVLLAGGVGLEVQCPAPTLARLVEGQEAELHTRLV---VREDAL 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF + + F LL V GVG ++A+ +LS + L +++ +++++ G+ Sbjct: 58 SLYGFPDEDSLELFELLLGVSGVGPKLALALLSALPPALLARALLEGDARLLTSASGVGK 117 Query: 119 KIASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K+A RI ELKGK L+ + V+ A +A+ AL+ LG+ + Q Sbjct: 118 KLAERIALELKGKVPEHLLAGPAGGGGTKVSSTAAE---------DAVLALLALGFREAQ 168 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V +L + + + +IR AL+ + Sbjct: 169 VRSVVAELLAQNPEASAQT-LIRKALKRL 196 >gnl|CDD|184762 PRK14606, ruvA, Holliday junction DNA helicase RuvA; Provisional. Length = 188 Score = 80.5 bits (198), Expect = 3e-16 Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ + GV + I C ++T + + G+ C L + QD I Sbjct: 1 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 60 LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + S +DM ++ ++ ALV+LGY + QA Sbjct: 120 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALVSLGYPEKQARE 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 163 AVKHVYREGMKT---SELIKEALKFLS 186 >gnl|CDD|173065 PRK14601, ruvA, Holliday junction DNA helicase RuvA; Provisional. Length = 183 Score = 73.3 bits (180), Expect = 4e-14 Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 29/206 (14%) Query: 1 MIGKIKGNIEGLYEDYVLID-VQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQ 57 MI I+G I ++++ GV Y I+ +L C KI G+ LF+ +++D Sbjct: 1 MIVAIEGIITKKEPTFIVLKTASGVSYGIFI---SLFCSAKIQKGEKHELFITQIIKEDS 57 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 +L+GFL +++ F +L V G+GA AM V S + +++ L + V+ ++PGI Sbjct: 58 NKLYGFLDKDEQKMFEMLLKVNGIGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIG 117 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A RI+ EL L +V A++AL+ LG+ Q++ Sbjct: 118 PKSAKRIIAELSDAKTKLENV------------------SDDKSEALAALLTLGFKQEK- 158 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 ++ VL ++ S++I+ AL+ Sbjct: 159 ---IIKVLASCQS-TGTSELIKEALK 180 >gnl|CDD|139961 PRK13901, ruvA, Holliday junction DNA helicase RuvA; Provisional. Length = 196 Score = 68.3 bits (167), Expect = 1e-12 Identities = 31/92 (33%), Positives = 57/92 (61%) Query: 40 KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99 ++ + + H R+D+++LFGFL+ +R+ F L V G+G R A+ VLS I E Sbjct: 39 RLLEDVEILTYLHTREDELKLFGFLNSSEREVFEELIGVDGIGPRAALRVLSGIKYNEFR 98 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 ++I ++ ++I+++ GI K+A +I +L+GK Sbjct: 99 DAIDREDIELISKVKGIGNKMAGKIFLKLRGK 130 >gnl|CDD|148866 pfam07499, RuvA_C, RuvA, C-terminal domain. Homologous recombination is a crucial process in all living organisms. In bacteria, this process the RuvA, RuvB, and RuvC proteins are involved. More specifically the proteins process the Holliday junction DNA. RuvA is comprised of three distinct domains. The domain represents the C-terminal domain and plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB. Within the Holliday junction, the C-terminal domain makes no interaction with DNA. Length = 47 Score = 43.2 bits (103), Expect = 5e-05 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Query: 163 AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+SAL+ LGY + +A AV VL+ A ++IR AL+ +S Sbjct: 6 AVSALLALGYKEKEAEKAVAKVLEDPG--ASVEELIRAALKLLS 47 >gnl|CDD|173129 PRK14666, uvrC, excinuclease ABC subunit C; Provisional. Length = 694 Score = 28.7 bits (64), Expect = 1.0 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 LQ V+G+G A + R + ++++ + +A +PGI A+ + LK Sbjct: 639 LQRVEGIGPATARLLWERFGS---LQAMAAAGEEGLAAVPGIGPARAAALHEHLKT 691 >gnl|CDD|179718 PRK04028, PRK04028, glutamyl-tRNA(Gln) amidotransferase subunit E; Validated. Length = 630 Score = 27.5 bits (62), Expect = 2.7 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Query: 90 LSRITATEL---VESIILQNSKVIAQIPGISM-KIASRIMTELKGKA 132 L ++ E+ ++ I+ +N + + + + +M EL+GKA Sbjct: 565 LKGLSEEEVEKIIDEIVEENIDFVKEKGMGAFGPLMGEVMAELRGKA 611 >gnl|CDD|177895 PLN02253, PLN02253, xanthoxin dehydrogenase. Length = 280 Score = 26.7 bits (59), Expect = 4.0 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Query: 116 ISMKIASRIMTEL-KGKAISLSSV 138 + MK A+RIM L KG +SL SV Sbjct: 133 LGMKHAARIMIPLKKGSIVSLCSV 156 >gnl|CDD|184532 PRK14139, PRK14139, heat shock protein GrpE; Provisional. Length = 185 Score = 26.9 bits (60), Expect = 4.5 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 19/60 (31%) Query: 147 NKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 ++ QA I +P+ +Q VV+VL+K IAD +++R AL ++ Sbjct: 142 HQHQA-ISMVPA----------------EQEPNTVVAVLQKGYTIAD--RVLRPALVTVA 182 >gnl|CDD|179965 PRK05218, PRK05218, heat shock protein 90; Provisional. Length = 613 Score = 26.2 bits (59), Expect = 5.6 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Query: 103 ILQNSKVIAQIPGISMKIASRIMTELKGKA 132 ILQ +V+ + I I +++ EL+ A Sbjct: 327 ILQEDRVVKK---IRKAITKKVLDELEKLA 353 >gnl|CDD|181839 PRK09419, PRK09419, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed. Length = 1163 Score = 26.3 bits (58), Expect = 5.6 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Query: 161 INAISALVNLGYGQDQATTAV--VSVLKKEKNI 191 ++AI AL +LG QD+ T + + + KK K + Sbjct: 839 VDAIIALTHLGSNQDRTTGEITGLELAKKVKGV 871 >gnl|CDD|181490 PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed. Length = 377 Score = 26.4 bits (59), Expect = 5.8 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 14/49 (28%) Query: 151 AHICSMPSFAINAISALVNLGYGQDQA-------------TTAVVSVLK 186 AH SMP +NAI L+ Q + T VV+++ Sbjct: 185 AH-SSMPELGVNAIDPLLEFYNEQKEYFDSIKKHNPYLGGLTHVVTIIN 232 >gnl|CDD|179065 PRK00558, uvrC, excinuclease ABC subunit C; Validated. Length = 598 Score = 25.9 bits (58), Expect = 8.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 110 IAQIPGISMKIASRIMTELKGK 131 +A++PGIS K+A I L K Sbjct: 577 LAKVPGISKKLAEAIYEALHKK 598 >gnl|CDD|150322 pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3. Length = 331 Score = 25.7 bits (57), Expect = 8.7 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Query: 132 AISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQD 175 +SL +QD +++ I F + ++A V LG GQ+ Sbjct: 168 QLSLRGFDEQDSEDLDELAKEIAKGLSGPNGFVLLDVTAFVRLGAGQE 215 >gnl|CDD|148047 pfam06207, DUF1002, Protein of unknown function (DUF1002). This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria. Length = 222 Score = 25.6 bits (57), Expect = 9.1 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 4/43 (9%) Query: 161 INAISALVNLGYGQDQATTAVVSVLKKE---KNIADDSQIIRL 200 + S L G G D+A +V+ +KKE + +I ++ Sbjct: 136 LVTTSELNGDGIGDDKA-ANLVAEIKKEIAKQKPKTKEEIRKI 177 >gnl|CDD|148872 pfam07507, WavE, WavE lipopolysaccharide synthesis. These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide. Length = 310 Score = 25.4 bits (56), Expect = 9.3 Identities = 16/47 (34%), Positives = 25/47 (53%) Query: 104 LQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQ 150 +Q + Q GI+ K + I T L G I LS+ QD+S ++ +Q Sbjct: 9 VQAYQGREQEKGITQKCLASIRTHLPGAEIILSTWPGQDLSGLDYDQ 55 >gnl|CDD|162529 TIGR01777, yfcH, conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein. Length = 292 Score = 25.7 bits (57), Expect = 9.9 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%) Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMG----VLSR 92 FL++L R W Q+ + +G RV + VL Sbjct: 133 DDFLAELCRDWEEAAQAAEDLGTRVVLLRTGIVLGP 168 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.324 0.137 0.390 Gapped Lambda K H 0.267 0.0756 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,086,837 Number of extensions: 181114 Number of successful extensions: 493 Number of sequences better than 10.0: 1 Number of HSP's gapped: 473 Number of HSP's successfully gapped: 27 Length of query: 207 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 118 Effective length of database: 4,071,361 Effective search space: 480420598 Effective search space used: 480420598 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 55 (24.9 bits)