HHsearch alignment for GI: 254780554 and conserved domain: PRK00039

>PRK00039 ruvC Holliday junction resolvase; Reviewed.
Probab=100.00  E-value=0  Score=396.02  Aligned_cols=161  Identities=51%  Similarity=0.804  Sum_probs=155.2

Q ss_pred             CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHH
Q ss_conf             80699997888720589999719968999833687388999888999999989998622796277885033202412478
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATL   83 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~   83 (169)
T Consensus         1 mMrILGIDPGl~~tG~gvie~~~~~~~~i~~G~I~t~~~~~~~~RL~~I~~~l~~li~~~~P~~~AiE~~F~~kN~~tai   80 (169)
T PRK00039          1 MMRILGIDPGLRRTGYGVIEVEGRKLSYVASGVIRTTSDDDLPERLKQIFDGLSEVIDQYQPDEAAIEQVFVNKNPQSTL   80 (169)
T ss_pred             CCEEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCHHHHH
T ss_conf             95899988366860899999769968999988995799999899999999999999996599656453788733688999


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf             8999999999999860161775260677765316888899999999999628899-999556789999999764168756
Q gi|254780554|r   84 KLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGY  162 (169)
Q Consensus        84 ~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~-~~~~D~aDAlAiAl~h~~~~~~~~  162 (169)
T Consensus        81 ~lgqARGvillaa~~~~i~v~eysP~~VK~aitG~G~A~K~QV~~MV~~~L~l~~~p~p~D~aDAlAiAicH~~~~~~~~  160 (169)
T PRK00039         81 KLGQARGVAILAAARRGLPVAEYTPLQVKKAVVGYGRADKEQVQHMVKRLLNLPAKPKPADAADALAIAICHAHRRQSLA  160 (169)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999838975888707445533189977899999999998299989997548999999999996776799


Q ss_pred             HH
Q ss_conf             86
Q gi|254780554|r  163 YK  164 (169)
Q Consensus       163 ~~  164 (169)
T Consensus       161 ~~  162 (169)
T PRK00039        161 GL  162 (169)
T ss_pred             HH
T ss_conf             98