HHsearch alignment for GI: 254780554 and conserved domain: cd00529
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=100.00 E-value=0 Score=368.96 Aligned_cols=153 Identities=46% Similarity=0.726 Sum_probs=148.7
Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHH
Q ss_conf 69999788872058999971996899983368738899988899999998999862279627788503320241247889
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKL 85 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~l 85 (169)
T Consensus 1 RILGIDPGl~~~G~aiie~~~~~~~~l~~g~I~t~~~~~~~~RL~~I~~~l~~li~~~~P~~vaiE~~f~~~n~~tal~l 80 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTSSDAPLPSRLKTIYDGLNEVIDQFQPDVVAIERVFFAKNPDSALKL 80 (154)
T ss_pred CEEEECCCCCCCEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHH
T ss_conf 96998756687159999957997899998889669999989999999999999998349978986546560188889999
Q ss_pred HHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999999860161775260677765316888899999999999628899-99955678999999976416
Q gi|254780554|r 86 GQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHA 158 (169)
Q Consensus 86 g~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~-~~~~D~aDAlAiAl~h~~~~ 158 (169)
T Consensus 81 g~arGvi~~~~~~~~i~v~ey~P~~VK~~vtG~G~A~K~qV~~mV~~~l~l~~~~~~~D~aDAlAiAl~h~~~~ 154 (154)
T cd00529 81 GQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADKDQVQHMVKRLLNLSEIPKPDDAADALAVAITHAHWL 154 (154)
T ss_pred HHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999999999981798616888998899867973759999999999819998999866899999999842719