HHsearch alignment of GI: 254780554 and MMDB domain: 1hjr_A_
>1hjr_A (A:) Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli}
Probab=100.00 E-value=0 Score=304.61 Aligned_cols=156 Identities=40% Similarity=0.668 Sum_probs=150.6
Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHH
Q ss_conf 69999788872058999971996899983368738899988899999998999862279627788503320241247889
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKL 85 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~l 85 (169)
||||||||+++||||++|.++++++++++|+|+++ +.+.++|+..|++.+.+++++|+|+.|+||++||++|+++++++
T Consensus 2 rvLgiDpg~~~tG~av~~~~~~~~~~i~~g~i~~~-~~~~~~R~~~i~~~l~~~l~~~~p~~v~iE~~~~~~~~~s~~~l 80 (158)
T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKL 80 (158)
T ss_dssp EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECC-CSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHH
T ss_pred EEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHH
T ss_conf 89998457784689999966997899995348459-87779999999999999986359866999841221573578889
Q ss_pred HHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf 99999999999860161775260677765316888899999999999628899999556789999999764168756
Q gi|254780554|r 86 GQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162 (169)
Q Consensus 86 g~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D~aDAlAiAl~h~~~~~~~~ 162 (169)
++++|++++++.++++|+.+|+|+++||++||+|+|+||||++||+++++...++++|++||+|+|+||+++.++.+
T Consensus 81 ~~~~G~i~~~~~~~~ipi~~v~P~~vKk~~tG~G~A~Ke~v~~~v~~~~~~~~~~~dd~aDA~aia~~~~~~~~~~~ 157 (158)
T 1hjr_A 81 GQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM 157 (158)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEHHHHHHHHTSSSSCCHHHHHHHHHHHTTCCCCCSSCTHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999975973899768998876105997799999999999839899999987999999999988734657