HHsearch alignment of GI: 254780554 and MMDB domain: 1hjr_A_

>1hjr_A (A:) Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli}
Probab=100.00  E-value=0  Score=304.61  Aligned_cols=156  Identities=40%  Similarity=0.668  Sum_probs=150.6

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHH
Q ss_conf             69999788872058999971996899983368738899988899999998999862279627788503320241247889
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKL   85 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~l   85 (169)
                      ||||||||+++||||++|.++++++++++|+|+++ +.+.++|+..|++.+.+++++|+|+.|+||++||++|+++++++
T Consensus         2 rvLgiDpg~~~tG~av~~~~~~~~~~i~~g~i~~~-~~~~~~R~~~i~~~l~~~l~~~~p~~v~iE~~~~~~~~~s~~~l   80 (158)
T 1hjr_A            2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKL   80 (158)
T ss_dssp             EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECC-CSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHH
T ss_pred             EEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHH
T ss_conf             89998457784689999966997899995348459-87779999999999999986359866999841221573578889


Q ss_pred             HHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf             99999999999860161775260677765316888899999999999628899999556789999999764168756
Q gi|254780554|r   86 GQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY  162 (169)
Q Consensus        86 g~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D~aDAlAiAl~h~~~~~~~~  162 (169)
                      ++++|++++++.++++|+.+|+|+++||++||+|+|+||||++||+++++...++++|++||+|+|+||+++.++.+
T Consensus        81 ~~~~G~i~~~~~~~~ipi~~v~P~~vKk~~tG~G~A~Ke~v~~~v~~~~~~~~~~~dd~aDA~aia~~~~~~~~~~~  157 (158)
T 1hjr_A           81 GQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM  157 (158)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEEHHHHHHHHTSSSSCCHHHHHHHHHHHTTCCCCCSSCTHHHHHHHHHHHHTTSSSC
T ss_pred             HHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999975973899768998876105997799999999999839899999987999999999988734657