HHsearch alignment of GI: 254780554 and MMDB domain: 3bzc_A_326-467
>3bzc_A (A:326-467) TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa}
Probab=98.15 E-value=1.2e-05 Score=55.39 Aligned_cols=126 Identities=16% Similarity=0.106 Sum_probs=74.5
Q ss_pred CCEEEEECCCCC-EEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHH
Q ss_conf 806999978887-2058999971996899983368738899988899999998999862279627788503320241247
Q gi|254780554|r 4 SIRIIGIDPGLR-RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVAT 82 (169)
Q Consensus 4 ~MrILGIDPGl~-~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~ 82 (169)
+.||||||||+. ++|+|+.|..|. +++...+....... +-....+.|.+++.+|+|+.|+|-.-- ..
T Consensus 3 ~~rilaiD~G~k~riG~A~~d~~g~---i~~~~~~~~~~~~~---~~~~~~~~l~~li~~~~~~~iViG~g~------~~ 70 (142)
T 3bzc_A 3 PRATLGLDPGLRTGVKVAVVDATGK---LLDTATVYPHAPKN---QWDQTLAVLAALCAKHQVELIAIGNGT------AS 70 (142)
T ss_dssp SCCEEEEECCSSSCEEEEEECTTSC---EEEEEEECCSGGGC---CHHHHHHHHHHHHHHHTCCEEEEESST------TH
T ss_pred CCEEEEECCCCCCCEEEEEECCCCC---EEEEEEECCCCCHH---HHHHHHHHHHHHHHHCCCCEEEECCCC------HH
T ss_conf 9716776799866259999989998---78867875689544---499999999999998199289988981------35
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 889999999999998601617752606777653168888999999999996288999995567899999997
Q gi|254780554|r 83 LKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCH 154 (169)
Q Consensus 83 ~~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D~aDAlAiAl~h 154 (169)
-.+-+++.-......+.++||+.+--.--.. ++-...... .....+.|.-||++++..-
T Consensus 71 ~~~~~~~~~~~~l~~~~~i~V~~vDE~~st~----------~a~~~~~~~---~~~~~~~d~~~Av~i~~~l 129 (142)
T 3bzc_A 71 RETDKLAGELIKKYPGMKLTKIMVSEAGASV----------YSASELAAK---EFPELDVSLRGAVSIARRL 129 (142)
T ss_dssp HHHHHHHHHHHHHCGGGCCEEEEECCHHHHH----------HHHSHHHHH---HCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCHHHHH----------HHCCHHHHH---HCCCCCHHHHHHHHHHHHC
T ss_conf 8999999999986767886289933324788----------761889885---5757883077888888860