Query gi|254780554|ref|YP_003064967.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 169
No_of_seqs 124 out of 1248
Neff 6.5
Searched_HMMs 23785
Date Tue May 31 20:06:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780554.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hjr_A Holliday junction resol 100.0 0 0 344.8 20.2 156 6-162 2-157 (158)
2 1kcf_A Hypothetical 30.2 KD pr 98.3 5.5E-05 2.3E-09 50.3 14.6 153 2-154 37-238 (258)
3 1vhx_A Putative holliday junct 98.2 4.2E-06 1.8E-10 57.2 7.8 108 4-119 2-113 (150)
4 1nu0_A Hypothetical protein YQ 98.0 3.6E-05 1.5E-09 51.5 9.2 104 4-117 2-109 (138)
5 1iv0_A Hypothetical protein; r 97.7 5E-05 2.1E-09 50.6 5.1 88 5-106 1-91 (98)
6 3bzc_A TEX; helix-turn-helix, 96.7 0.002 8.5E-08 40.7 5.1 61 5-71 329-390 (785)
7 2gel_A Putative GRAM negative 96.2 0.037 1.5E-06 32.9 9.1 95 5-111 1-97 (231)
8 2ivn_A O-sialoglycoprotein end 96.0 0.029 1.2E-06 33.6 7.8 93 5-110 1-109 (330)
9 3eno_A Putative O-sialoglycopr 95.8 0.052 2.2E-06 32.0 8.5 96 3-110 4-114 (334)
10 3en9_A Glycoprotease, O-sialog 95.6 0.13 5.4E-06 29.6 10.5 99 2-109 3-112 (540)
11 2a6a_A Hypothetical protein TM 95.6 0.059 2.5E-06 31.6 7.9 96 3-111 11-108 (218)
12 2gup_A ROK family protein; sug 95.0 0.049 2.1E-06 32.1 6.0 60 3-71 2-61 (292)
13 1zc6_A Probable N-acetylglucos 94.8 0.073 3.1E-06 31.1 6.4 61 1-64 6-68 (305)
14 2aa4_A Mannac kinase, putative 94.7 0.065 2.7E-06 31.4 5.9 56 5-67 1-56 (289)
15 2qm1_A Glucokinase; alpha-beta 94.3 0.12 4.8E-06 29.9 6.4 57 6-65 7-63 (326)
16 2e2o_A Hexokinase; acetate and 93.0 0.073 3.1E-06 31.1 3.6 63 4-71 1-66 (299)
17 1t6c_A Exopolyphosphatase; alp 92.1 0.66 2.8E-05 25.2 10.6 80 3-82 10-102 (315)
18 1hux_A Activator of (R)-2-hydr 91.9 0.67 2.8E-05 25.1 7.4 51 4-59 2-52 (270)
19 3eo3_A Bifunctional UDP-N-acet 91.8 0.52 2.2E-05 25.8 6.7 58 2-64 17-74 (333)
20 3ll3_A Gluconate kinase; xylul 90.9 0.89 3.7E-05 24.4 8.7 61 4-67 2-71 (504)
21 1woq_A Inorganic polyphosphate 90.9 0.9 3.8E-05 24.4 8.3 62 2-64 9-70 (267)
22 3lm2_A Putative kinase; struct 89.8 0.39 1.6E-05 26.6 4.6 61 1-72 2-62 (226)
23 1u6z_A Exopolyphosphatase; alp 87.7 1.5 6.5E-05 22.9 7.0 70 2-71 8-88 (513)
24 2ews_A Pantothenate kinase; PA 87.0 1.1 4.8E-05 23.7 5.4 52 3-71 19-70 (287)
25 3i33_A Heat shock-related 70 k 86.2 0.41 1.7E-05 26.5 2.8 20 4-23 22-41 (404)
26 3i8b_A Xylulose kinase; strain 85.4 2 8.6E-05 22.2 6.9 69 1-71 1-71 (515)
27 3p4i_A Acetate kinase; structu 84.8 2 8.4E-05 22.2 5.8 55 3-59 11-70 (392)
28 2ch5_A NAGK protein; transfera 84.2 1.1 4.4E-05 23.9 4.2 56 6-64 7-64 (347)
29 1saz_A Probable butyrate kinas 82.1 0.65 2.7E-05 25.2 2.4 21 4-24 1-21 (381)
30 3g25_A Glycerol kinase; IDP007 82.0 2.8 0.00012 21.3 7.9 59 3-64 2-70 (501)
31 1zbs_A Hypothetical protein PG 81.9 2.8 0.00012 21.3 5.6 60 7-69 2-62 (291)
32 3htv_A D-allose kinase, alloki 81.4 1.1 4.7E-05 23.8 3.4 60 4-67 6-65 (310)
33 1nbw_A Glycerol dehydratase re 80.6 2.9 0.00012 21.3 5.3 18 7-24 411-428 (607)
34 3cer_A Possible exopolyphospha 80.2 3.2 0.00014 20.9 10.3 81 3-83 14-108 (343)
35 2iir_A Acetate kinase; transfe 79.0 3.6 0.00015 20.7 6.2 52 5-58 1-72 (403)
36 1z05_A Transcriptional regulat 78.3 3.7 0.00016 20.6 7.0 59 4-66 107-165 (429)
37 3epq_A Putative fructokinase; 77.8 3.9 0.00016 20.5 5.9 59 4-72 2-60 (302)
38 3mcp_A Glucokinase; structural 76.7 4.1 0.00017 20.3 6.1 57 4-64 8-64 (366)
39 1g99_A Acetate kinase; alpha/b 75.8 3.2 0.00013 21.0 4.3 24 5-28 1-24 (408)
40 2uyt_A Rhamnulokinase; rhamnos 75.1 2.8 0.00012 21.3 3.9 23 6-28 5-27 (489)
41 1z6r_A MLC protein; transcript 71.7 5.5 0.00023 19.5 5.2 59 4-66 84-142 (406)
42 2d0o_A DIOL dehydratase-reacti 68.3 6.5 0.00027 19.1 7.5 28 108-135 546-573 (610)
43 2hoe_A N-acetylglucosamine kin 66.6 7.1 0.0003 18.8 6.8 55 5-62 87-141 (380)
44 3h6e_A Carbohydrate kinase, FG 66.3 3.3 0.00014 20.9 2.6 24 6-29 7-30 (482)
45 1dkg_D Molecular chaperone DNA 65.2 2.3 9.8E-05 21.8 1.7 18 6-23 3-20 (383)
46 3mdq_A Exopolyphosphatase; str 63.1 8.2 0.00035 18.4 9.8 78 6-83 5-95 (315)
47 2dpn_A Glycerol kinase; thermu 61.6 8.8 0.00037 18.3 6.9 59 6-64 3-66 (495)
48 1zxo_A Conserved hypothetical 60.0 1.6 6.6E-05 22.9 0.1 24 7-31 2-25 (291)
49 2p67_A LAO/AO transport system 59.7 6.6 0.00028 19.0 3.2 68 4-74 86-158 (341)
50 2v7y_A Chaperone protein DNAK; 58.2 7.4 0.00031 18.7 3.3 28 6-33 162-189 (509)
51 2w40_A Glycerol kinase, putati 54.9 11 0.00048 17.6 7.7 24 4-27 2-26 (503)
52 2zf5_O Glycerol kinase; hypert 54.7 11 0.00048 17.5 7.1 55 7-64 5-67 (497)
53 2ap1_A Putative regulator prot 53.9 12 0.0005 17.5 7.6 57 4-65 24-80 (327)
54 2kho_A Heat shock protein 70; 53.6 9.2 0.00039 18.1 3.1 33 124-156 347-381 (605)
55 3hi0_A Putative exopolyphospha 53.3 12 0.00051 17.4 7.7 81 4-84 14-107 (508)
56 2www_A Methylmalonic aciduria 53.3 4.2 0.00018 20.2 1.4 76 3-78 103-180 (349)
57 3cpe_A Terminase, DNA packagin 53.1 12 0.00051 17.4 7.5 61 5-72 420-484 (592)
58 3hz6_A Xylulokinase; xylulose, 53.1 12 0.00051 17.4 6.9 27 1-27 1-27 (511)
59 2z1c_A Hydrogenase expression/ 52.3 13 0.00053 17.3 4.5 56 3-63 5-75 (75)
60 3jvp_A Ribulokinase; PSI-II, N 51.7 13 0.00054 17.2 7.5 57 6-64 6-81 (572)
61 2e1z_A Propionate kinase; TDCD 51.7 13 0.00054 17.2 6.7 54 3-58 16-86 (415)
62 2fsj_A Hypothetical protein TA 51.1 6.7 0.00028 19.0 2.1 17 3-19 19-35 (346)
63 2itm_A Xylulose kinase, xylulo 50.8 13 0.00056 17.2 5.8 55 8-65 3-65 (484)
64 3c6a_A Terminase large subunit 50.3 13 0.00057 17.1 7.3 59 5-72 60-124 (232)
65 3p32_A Probable GTPase RV1496/ 46.9 7.3 0.00031 18.8 1.8 71 4-74 109-181 (355)
66 3ifr_A Carbohydrate kinase, FG 44.5 17 0.0007 16.6 6.5 57 5-64 7-71 (508)
67 1e4f_T Cell division protein F 41.7 18 0.00077 16.3 6.1 39 1-39 4-42 (419)
68 2p3r_A Glycerol kinase; glycer 40.0 19 0.00082 16.1 7.6 56 6-64 4-67 (510)
69 2zgy_A Plasmid segregation pro 39.5 20 0.00083 16.1 4.7 19 7-25 2-20 (320)
70 3khy_A Propionate kinase; csgi 39.4 20 0.00084 16.1 6.2 23 6-28 3-25 (384)
71 1io2_A Ribonuclease HII; endon 38.9 7 0.00029 18.9 0.6 56 5-63 1-63 (213)
72 1jce_A ROD shape-determining p 33.6 18 0.00075 16.3 2.0 16 6-21 4-19 (344)
73 2d4w_A Glycerol kinase; alpha 32.9 25 0.0011 15.4 7.6 54 7-63 4-65 (504)
74 3d3r_A Hydrogenase assembly ch 32.5 26 0.0011 15.4 5.4 57 3-62 26-98 (103)
75 3ot5_A UDP-N-acetylglucosamine 32.0 26 0.0011 15.3 6.9 57 41-109 91-147 (403)
76 3js6_A Uncharacterized PARM pr 28.7 19 0.0008 16.2 1.5 16 4-19 3-18 (355)
77 2ot2_A Hydrogenase isoenzymes 28.0 31 0.0013 14.9 4.3 51 4-59 6-77 (90)
78 3hlz_A Uncharacterized protein 27.8 31 0.0013 14.9 3.0 53 104-157 158-212 (269)
79 1v4v_A UDP-N-acetylglucosamine 27.0 32 0.0013 14.8 7.4 57 41-109 68-124 (376)
80 1uax_A Ribonuclease HII, ribon 25.9 22 0.00094 15.7 1.4 62 5-69 1-69 (220)
81 3l0q_A Xylulose kinase; xlylul 24.7 35 0.0015 14.5 6.6 59 6-64 6-69 (554)
82 2qm8_A GTPase/ATPase; G protei 22.7 17 0.00072 16.5 0.4 74 4-77 85-160 (337)
83 1d2d_A TRNA synthetase, tRNA l 20.9 30 0.0012 15.0 1.3 18 119-136 19-36 (59)
84 3h3n_X Glycerol kinase; ATP-bi 20.6 42 0.0018 14.0 8.3 60 1-63 1-68 (506)
85 2h3g_X Biosynthetic protein; p 20.2 43 0.0018 14.0 5.3 35 7-45 2-36 (268)
No 1
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=100.00 E-value=0 Score=344.84 Aligned_cols=156 Identities=40% Similarity=0.677 Sum_probs=150.4
Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHH
Q ss_conf 69999788872058999971996899983368738899988899999998999862279627788503320241247889
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKL 85 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~l 85 (169)
.|||||||+++|||||+|.++++++++++|+|+|+++ ++++||..|++++.+++++|+||.|++|++||++|++|++++
T Consensus 2 iILGiDPgl~~tG~avid~~~~~~~~i~~g~i~t~~~-~~~~Rl~~I~~~l~~ii~~~~pd~vaiE~~f~~~n~~sa~~l 80 (158)
T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKL 80 (158)
T ss_dssp EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCS-CHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHH
T ss_pred EEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHH
T ss_conf 8999843558568999995398789998668977998-879999999999999997139735369898862388899999
Q ss_pred HHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf 99999999999860161775260677765316888899999999999628899999556789999999764168756
Q gi|254780554|r 86 GQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162 (169)
Q Consensus 86 g~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D~aDAlAiAl~h~~~~~~~~ 162 (169)
||+||++++++.++++|++||+|++|||++||+|+|+|+||+.||+++|++.+++.+|++||+|+|+||+|+.+|+.
T Consensus 81 ~~a~G~i~~~~~~~~i~i~~~~P~~vKk~vtG~G~A~K~qV~~mv~~~l~l~~~~~~D~aDAlAial~h~~~~~~~~ 157 (158)
T 1hjr_A 81 GQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM 157 (158)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEHHHHHHHHTSSSSCCHHHHHHHHHHHTTCCCCCSSCTHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999985996013688999999857997799999999999819999999987999999999997623446
No 2
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=98.28 E-value=5.5e-05 Score=50.32 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=87.6
Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECC-EEEEEEEEEEECCCC----------CCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98806999978887205899997199-689998336873889----------9988899999998999862279627788
Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVR----------QSLAFRLCQLYEGLTDVIKNWRPEEAAV 70 (169)
Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~-~~~li~~g~I~t~~~----------~~~~~Rl~~I~~~l~~ii~~~~Pd~vai 70 (169)
+..+|||+||.|+.+..|++++...+ ...+.++.++..... .+...-...++.-++.++..++||.|.|
T Consensus 37 ~~~~rILSIDvGIKNLAyc~l~~~~~~~~~I~~W~~i~L~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~d~vlI 116 (258)
T 1kcf_A 37 YPTSRVLGIDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILM 116 (258)
T ss_dssp CCCSSEEEEEECSTTEEEEEEEECTTSCEEEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 89982789982743001235612789875578754621255667553135567879999999999998640047998997
Q ss_pred EHHHHCCCHHH----HHHHHHHHHHHHHHHHHC---------CC-CEEEECHHHHHHHHCC--------CCCCCH-HHHH
Q ss_conf 50332024124----788999999999999860---------16-1775260677765316--------888899-9999
Q gi|254780554|r 71 EQVFVNKDAVA----TLKLGQARAIAILSPALA---------RI-PVSEYAPNTIKKAVIG--------VGHGDK-KQIH 127 (169)
Q Consensus 71 E~~F~~~n~~t----~~~lg~arGvi~l~~~~~---------~i-~v~ey~P~~vKkavtG--------~G~A~K-eqV~ 127 (169)
|.+-+..+..+ ++++....+.+....... .. -|....|..+.++-.. ..+-.+ +-+.
T Consensus 117 E~Qr~Rs~~~~v~~~~lr~~~le~mL~a~~~~~~~~~~~~~~~~~~v~~~~p~~v~~y~~~~~~~~~~~~~Kk~~i~l~~ 196 (258)
T 1kcf_A 117 ERQRYRSGIATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVK 196 (258)
T ss_dssp EECCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEEEECCHHHHHHHHHHHHC-------CCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 87766567752137889999999999999998613432334664358875756667874234565443420199999999
Q ss_pred HHHHH-------------HC--CCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999-------------62--88999995567899999997
Q gi|254780554|r 128 MMLKM-------------LM--PESFFKGKDAADALAIAVCH 154 (169)
Q Consensus 128 ~mV~~-------------ll--~~~~~~~~D~aDAlAiAl~h 154 (169)
..+.. .. -....|-||.||++=-|+.-
T Consensus 197 ~~L~~~~~~~~~~~~~~~~~~~f~~~kKkDDLADslLQ~la~ 238 (258)
T 1kcf_A 197 ELIDGQKILFENEEALYKWNNGSRVEFKKDDMADSALIASGW 238 (258)
T ss_dssp HHHHTTSEEESSHHHHHHHHHCCSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 998425334677167888987447777634678799999999
No 3
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=98.22 E-value=4.2e-06 Score=57.21 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=66.8
Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHH
Q ss_conf 80699997888720589999719968999833687388999888999999989998622796277885033202412478
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATL 83 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~ 83 (169)
+|||||||+|..++|+||-|..+.-...+. ++..+.... ....+.|.+++++++|+.++|=-|.--.+..+.
T Consensus 2 ~MriLgiD~G~kriGvAisD~~~~~a~pl~--~i~~~~~~~-----~~~~~~i~~ii~e~~i~~iViGlP~~~dg~~~~- 73 (150)
T 1vhx_A 2 SLRILGLDLGTKTLGVALSDEMGWTAQGIE--TIKINEAEG-----DYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGP- 73 (150)
T ss_dssp CEEEEEEEECSSEEEEEEECTTSSSEEEEE--EEECBGGGT-----BCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCH-
T ss_pred CCEEEEEECCCCEEEEEEECCCCCCCCCCE--EEECCCCCC-----HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH-
T ss_conf 860999952899799999569988335601--133223452-----479999999999839996998578466887548-
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEE----CHHHHHHHHCCCC
Q ss_conf 89999999999998601617752----6067776531688
Q gi|254780554|r 84 KLGQARAIAILSPALARIPVSEY----APNTIKKAVIGVG 119 (169)
Q Consensus 84 ~lg~arGvi~l~~~~~~i~v~ey----~P~~vKkavtG~G 119 (169)
..-+++--+-......++||+.+ +..+.+...-..|
T Consensus 74 ~~~~v~~f~~~l~~~~~l~V~~~DEr~TS~~A~~~l~~~~ 113 (150)
T 1vhx_A 74 RGEASQTFAKVLETTYNVPVVLWDERLTTMAAEKMLIAAD 113 (150)
T ss_dssp HHHHHHHHHHHHHHHHCSCEEEECCSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCC
T ss_conf 8999999999626588975688678865999999999769
No 4
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=98.01 E-value=3.6e-05 Score=51.46 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=64.5
Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHH
Q ss_conf 80699997888720589999719968999833687388999888999999989998622796277885033202412478
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATL 83 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~ 83 (169)
+-||||||+|+.++|+||-|..+.-... .+++..+.... ..+.|.+++++|+|+.++|--|+-..+..+..
T Consensus 2 ~griLgiD~G~kriGlAisd~~~~~a~p--l~~i~~~~~~~-------~~~~l~~~i~e~~~~~iVvG~P~~~~g~~~~~ 72 (138)
T 1nu0_A 2 SGTLMAFDFGTKSIGVAVGQRITGTARP--LPAIKAQDGTP-------DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPL 72 (138)
T ss_dssp CCEEEEEECCSSEEEEEEEETTTTEEEE--EEEEEEETTEE-------CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHH
T ss_pred CCCEEEEEECCCEEEEEEECCCCCCEEC--CEEEECCCCHH-------HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHH
T ss_conf 9768999937887999994799884304--18898277468-------99999998630487299955545778984889
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEE----CHHHHHHHHCC
Q ss_conf 89999999999998601617752----60677765316
Q gi|254780554|r 84 KLGQARAIAILSPALARIPVSEY----APNTIKKAVIG 117 (169)
Q Consensus 84 ~lg~arGvi~l~~~~~~i~v~ey----~P~~vKkavtG 117 (169)
.-+++--+-....+.++||+.+ +..+.+....-
T Consensus 73 -~~~v~~F~~~L~~~~~i~v~~~DErlTS~eA~~~l~~ 109 (138)
T 1nu0_A 73 -TARARKFANRIHGRFGVEVKLHDERLSTVEARSGLFE 109 (138)
T ss_dssp -HHHHHHHHHHHHHHHCCCEEEEEEECCCCCC------
T ss_pred -HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf -9999999999998509987996076449999999997
No 5
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=97.66 E-value=5e-05 Score=50.59 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=54.9
Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCC---CHHH
Q ss_conf 0699997888720589999719968999833687388999888999999989998622796277885033202---4124
Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK---DAVA 81 (169)
Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~---n~~t 81 (169)
|||||||.|..++|.|+-|..+.-... .++|... + .....+.|.+++++|+|+.++|=-|.--. +.++
T Consensus 1 MriLglD~G~kriGvAisd~~~~~A~p--l~~i~~~---~----~~~~~~~l~~li~e~~i~~iVvGlP~~~dG~~~~~~ 71 (98)
T 1iv0_A 1 MRVGALDVGEARIGLAVGEEGVPLASG--RGYLVRK---T----LEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQA 71 (98)
T ss_dssp CCEEEEEESSSEEEEEEECSCCSSCCC--EEEEECC---C----HHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCS
T ss_pred CCEEEEEECCCEEEEEEECCCCCEEEC--EEEEECC---C----CHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHH
T ss_conf 929999808998999992599987817--7889825---8----568999999999971857499158977899919899
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 7889999999999998601617752
Q gi|254780554|r 82 TLKLGQARAIAILSPALARIPVSEY 106 (169)
Q Consensus 82 ~~~lg~arGvi~l~~~~~~i~v~ey 106 (169)
. .+ +--+-. +...++||..+
T Consensus 72 ~-~v---~~f~~~-L~~~~~pv~~~ 91 (98)
T 1iv0_A 72 G-KV---LPLVEA-LRARGVEVELW 91 (98)
T ss_dssp S-TT---HHHHHH-HHHTTCEEEEE
T ss_pred H-HH---HHHHHH-HHHCCCCEEEE
T ss_conf 9-99---999999-86379999998
No 6
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=96.70 E-value=0.002 Score=40.67 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=42.4
Q ss_pred CEEEEECCCCC-EEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 06999978887-20589999719968999833687388999888999999989998622796277885
Q gi|254780554|r 5 IRIIGIDPGLR-RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71 (169)
Q Consensus 5 MrILGIDPGl~-~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE 71 (169)
-++||+|||.+ .|-|+++|.+| +++++++|-+....... ..-...|.+++.+|+|+.|+|=
T Consensus 329 ~~vlg~dPg~r~g~k~a~vD~~G---~vld~~~iyp~~~~~~~---~~a~~~l~~li~~~~~~vIaIG 390 (785)
T 3bzc_A 329 RATLGLDPGLRTGVKVAVVDATG---KLLDTATVYPHAPKNQW---DQTLAVLAALCAKHQVELIAIG 390 (785)
T ss_dssp CCEEEEECCSSSCEEEEEECTTS---CEEEEEEECCSGGGCCH---HHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEECCCCCCCEEEEEECCCC---CEEEEEEECCCCCCCCH---HHHHHHHHHHHHHCCCCEEEEC
T ss_conf 82355478987735999998999---87876797468974235---9999999999998299689976
No 7
>2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A
Probab=96.22 E-value=0.037 Score=32.91 Aligned_cols=95 Identities=11% Similarity=0.222 Sum_probs=51.3
Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCC--CHHHH
Q ss_conf 0699997888720589999719968999833687388999888999999989998622796277885033202--41247
Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK--DAVAT 82 (169)
Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~--n~~t~ 82 (169)
|+||+||-++..+..|+.+ +++.. .. .... ...+.+.|.. .+.+++++.+...=-+..+.++. ..-|.
T Consensus 1 M~iLaIdTS~~~~sval~~--~~~i~--~~--~~~~-~r~hs~~L~~---~i~~~L~~~~i~~~did~i~v~~GPGSFTG 70 (231)
T 2gel_A 1 MRILAIDTATEACSVALWN--NGTIN--AH--FELC-PREHTQRILP---MVQEILAASGASLNEIDALAFGRGPGSFTG 70 (231)
T ss_dssp CEEEEEECSSSEEEEEEEE--TTEEE--EE--EEEC-CSCCHHHHHH---HHHHHHHHTTCCGGGCSEEEEECCSSCHHH
T ss_pred CCEEEEECCCCCEEEEEEE--CCEEE--EE--EEEC-CHHHHHHHHH---HHHHHHHHCHHHHHHHCEEEEECCCCCHHH
T ss_conf 9899999377271999999--99999--99--9975-5899999999---999998755021233107999758651375
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 88999999999999860161775260677
Q gi|254780554|r 83 LKLGQARAIAILSPALARIPVSEYAPNTI 111 (169)
Q Consensus 83 ~~lg~arGvi~l~~~~~~i~v~ey~P~~v 111 (169)
+.+|-+-.-.+ +.-.++|++.++..++
T Consensus 71 lRig~s~akgl--a~~~~ip~igvssl~~ 97 (231)
T 2gel_A 71 VRIGIGIAQGL--ALGANLPMIGVSTLAT 97 (231)
T ss_dssp HHHHHHHHHHH--HHTTTCCEEEECHHHH
T ss_pred HHHHHHHHHHH--HHHHCCCCCCCCHHHH
T ss_conf 88999999999--9974888675276999
No 8
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=96.05 E-value=0.029 Score=33.59 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=50.3
Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC-CCCC----------CHHHHHHHHHHHHHHHHHC-----CCCCEE
Q ss_conf 06999978887205899997199689998336873-8899----------9888999999989998622-----796277
Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQ----------SLAFRLCQLYEGLTDVIKN-----WRPEEA 68 (169)
Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t-~~~~----------~~~~Rl~~I~~~l~~ii~~-----~~Pd~v 68 (169)
|.|||||-+...|+.||+|.. + ++ +.++.+ ..+. .+.+.|..+ +++++++ -.+|.+
T Consensus 1 M~iLgIeTScd~tsvAi~~~~--~--il-~~~~~~~~~~~GGvvP~~A~r~H~~~l~~~---i~~~l~~a~i~~~~id~i 72 (330)
T 2ivn_A 1 MLALGIEGTAHTLGIGIVSED--K--VL-ANVFDTLTTEKGGIHPKEAAEHHARLMKPL---LRKALSEAGVSLDDIDVI 72 (330)
T ss_dssp CCEEEEECSSSEEEEEEECSS--C--EE-EEEEEECCCTTCCCCHHHHHHHHHHHHHHH---HHHHHHHHTCCTTTCCEE
T ss_pred CEEEEEECCCHHHEEEEEECC--E--EE-EEEEEEEECCCCCCCHHHHHHHHHHHHHHH---HHHHHHHCCCCHHHCCEE
T ss_conf 909999836440289999899--9--99-998883126779858589999999999999---999999849985568668
Q ss_pred EEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHH
Q ss_conf 885033202412478899999999999986016177526067
Q gi|254780554|r 69 AVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110 (169)
Q Consensus 69 aiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~ 110 (169)
|+-. +-..-+.+.+|..- +.-.+...++|++.+.-.+
T Consensus 73 avt~---gPG~~~~L~vG~~~--Ak~la~~~~~P~i~v~Hl~ 109 (330)
T 2ivn_A 73 AFSQ---GPGLGPALRVVATA--ARALAVKYRKPIVGVNHCI 109 (330)
T ss_dssp EEEE---ESSCHHHHHHHHHH--HHHHHHHTTCCEEEEEHHH
T ss_pred EEEC---CCCCCCCHHHHHHH--HHHHHHHCCCCEEEECCHH
T ss_conf 8812---89841026999999--9999986087637626399
No 9
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=95.85 E-value=0.052 Score=31.97 Aligned_cols=96 Identities=8% Similarity=0.119 Sum_probs=49.4
Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCC----------CHHHHHHHHHHHHHHHHHCC-----CCCE
Q ss_conf 88069999788872058999971996899983368738899----------98889999999899986227-----9627
Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ----------SLAFRLCQLYEGLTDVIKNW-----RPEE 67 (169)
Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~----------~~~~Rl~~I~~~l~~ii~~~-----~Pd~ 67 (169)
.+|+|||||-+-..|+.||+|. + +. +.........+. .+.+.|.. -+++++++. .+|.
T Consensus 4 ~~m~iLgIeTScd~tsvaiv~~-~-~i--l~~~~~~~~~~~GGvvP~~A~r~H~~~l~~---~i~~~l~~a~i~~~~id~ 76 (334)
T 3eno_A 4 DPMIVLGLEGTAHTISCGIIDE-S-RI--LAMESSMYRPKTGGIRPLDAAVHHSEVIDT---VISRALEKAKISIHDIDL 76 (334)
T ss_dssp CCCEEEEEECSSSEEEEEEEES-S-CC--CEEEEEECCCSSCSCCHHHHHHHHHHHHHH---HHHHHHHHHTCCGGGCCE
T ss_pred CCCEEEEEECCHHHEEEEEEEC-C-EE--EEEEEEEEECCCCCCCHHHHHHHHHHHHHH---HHHHHHHHCCCCHHHCCE
T ss_conf 7757999984604208999989-9-88--899888710787988869999999999999---999999974986433026
Q ss_pred EEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHH
Q ss_conf 7885033202412478899999999999986016177526067
Q gi|254780554|r 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110 (169)
Q Consensus 68 vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~ 110 (169)
+++-. +-.-...+.+|.. .....+...++|++.+.-.+
T Consensus 77 ia~t~---gPGl~~~l~vG~~--~Ak~la~~~~~Pli~v~Hle 114 (334)
T 3eno_A 77 IGFSM---GPGLAPSLRVTAT--AARTISVLTGKPIIGVNHPL 114 (334)
T ss_dssp EEEEC---SSSCHHHHHHHHH--HHHHHHHHHTCCCEEECHHH
T ss_pred EEECC---CCCCCCCCCHHHH--HHHHHHHHCCCCCCCCCHHH
T ss_conf 88435---7873224206799--99998874267845235188
No 10
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=95.64 E-value=0.13 Score=29.58 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=51.9
Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC----------CCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 98806999978887205899997199689998336873889----------99888999999989998622796277885
Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR----------QSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71 (169)
Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~----------~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE 71 (169)
..+|.|||||-+-.-|+.||++.++. ++..-.+..... ..+.+.|..+.++..+-++...+|.|++-
T Consensus 3 ~~~m~vLgIETScddTs~Aiv~~~~~---il~~~~~~~~~~~gGvvPe~A~r~H~~~l~~li~~al~~~~~~~id~IavT 79 (540)
T 3en9_A 3 MDPMICLGLEGTAEKTGVGIVTSDGE---VLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEVVDKNEIDLIAFS 79 (540)
T ss_dssp CCSCEEEEEECSSSEEEEEEEETTSC---EEEEEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHHSCGGGCCEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEECCCE---EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 77737999986666607899968980---999867874389899890899999999999999999975895458889995
Q ss_pred H-HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHH
Q ss_conf 0-3320241247889999999999998601617752606
Q gi|254780554|r 72 Q-VFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109 (169)
Q Consensus 72 ~-~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~ 109 (169)
. | .-...+.+|..- ..-.+...++|++.+.-.
T Consensus 80 ~gP----Gl~g~L~vG~~~--Ak~La~~~~iPli~V~Hl 112 (540)
T 3en9_A 80 QGP----GLGPSLRVTATV--ARTLSLTLKKPIIGVNHC 112 (540)
T ss_dssp EES----SCHHHHHHHHHH--HHHHHHHHTCCEEEEEHH
T ss_pred CCC----CCHHHHHHHHHH--HHHHHHHCCCCCCCCCHH
T ss_conf 799----734638999999--999999639981563389
No 11
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} SCOP: c.55.1.9 c.55.1.9
Probab=95.57 E-value=0.059 Score=31.63 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=52.8
Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC--HH
Q ss_conf 8806999978887205899997199689998336873889998889999999899986227962778850332024--12
Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD--AV 80 (169)
Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n--~~ 80 (169)
+-|+||+||-+. ++..|+.+ ++.+. +. ... ....+.+.| ...+.+++++.+.+.--|+.++++.. .-
T Consensus 11 ~~M~iLaiDTS~-~~sval~~--~~~i~--~~-~~~--~~r~hse~L---~~~i~~~L~~~~l~~~did~i~v~~GPGsF 79 (218)
T 2a6a_A 11 HHMNVLALDTSQ-RIRIGLRK--GEDLF--EI-SYT--GEKKHAEIL---PVVVKKLLDELDLKVKDLDVVGVGIGPGGL 79 (218)
T ss_dssp --CEEEEEECSS-SEEEEEEE--TTEEE--EE-EEE--SCGGGGGHH---HHHHHHHHHHHTCCGGGCSEEEEECCSSCH
T ss_pred CCCEEEEEECCC-CCEEEEEE--CCEEE--EE-EEC--CCHHHHHHH---HHHHHHHHHHCCCCHHHCCEEEEECCCCCH
T ss_conf 546077798277-64799998--99999--99-832--666899999---999999999859997886389995689808
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 4788999999999999860161775260677
Q gi|254780554|r 81 ATLKLGQARAIAILSPALARIPVSEYAPNTI 111 (169)
Q Consensus 81 t~~~lg~arGvi~l~~~~~~i~v~ey~P~~v 111 (169)
|.+.+|-+- +.-.+.-.++|++.++.-++
T Consensus 80 TGlRIg~a~--akgla~~~~ipl~~vssl~~ 108 (218)
T 2a6a_A 80 TGLRVGIAT--VVGLVSPYDIPVAPLNSFEM 108 (218)
T ss_dssp HHHHHHHHH--HHHHHGGGTCCEEEECHHHH
T ss_pred HHHHHHHHH--HHHHHHHCCCCCCCCCHHHH
T ss_conf 889899999--99999864998554577999
No 12
>2gup_A ROK family protein; sugar kinase, APC80695, sucrose, structural genomics, PSI, protein structure initiative; HET: SUC; 2.01A {Streptococcus pneumoniae TIGR4} SCOP: c.55.1.10 c.55.1.10
Probab=95.01 E-value=0.049 Score=32.13 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=43.4
Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 880699997888720589999719968999833687388999888999999989998622796277885
Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71 (169)
Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE 71 (169)
-+|+|+|||-|=|++=+++++..++ .++...+.|+ + .+..+...+.+.+.+++...++|=
T Consensus 2 ~~~~~~~iDiGGT~ir~~l~d~~g~---ii~~~~~~t~--~----~~~~~~~~i~~~~~~~~i~~Igia 61 (292)
T 2gup_A 2 NAMTIATIDIGGTGIKFASLTPDGK---ILDKTSISTP--E----NLEDLLAWLDQRLSEQDYSGIAMS 61 (292)
T ss_dssp --CCEEEEEEETTEEEEEEECTTCC---EEEEEEECCC--S----SHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred CCCEEEEEEECCHHEEEEEECCCCC---EEEEEEEECC--C----CHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9888999997702469999918996---9999997287--6----599999999998665278679996
No 13
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, structural genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum atcc 12472} SCOP: c.55.1.5 c.55.1.5
Probab=94.80 E-value=0.073 Score=31.08 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=43.7
Q ss_pred CCCCCE-EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 998806-9999788872058999971996899983368738-899988899999998999862279
Q gi|254780554|r 1 MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-VRQSLAFRLCQLYEGLTDVIKNWR 64 (169)
Q Consensus 1 ~~~~Mr-ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-~~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169)
|.++|| +||||-|-+++=++++|.+++ .+......+. ...+..+=+..|.+.+++.+++..
T Consensus 6 ~~~~m~y~iGIDiGgT~i~~~l~d~~G~---il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~g 68 (305)
T 1zc6_A 6 MNPSIRYLIGVDGGGTGTRIRLHASDGT---PLAMAEGGASALSQGIAKSWQAVLSTLEAAFQQAG 68 (305)
T ss_dssp --CCCCEEEEEEECSSCEEEEEEETTCC---EEEEEEESCCCGGGCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCC---EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 8988868999992810089999979998---99999966998566999999999999999999749
No 14
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=94.66 E-value=0.065 Score=31.41 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=41.0
Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 069999788872058999971996899983368738899988899999998999862279627
Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67 (169)
Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~ 67 (169)
|-|||||-|-+++=++++|..|+- +....+.++.... ...+.+.+.+++++++.+.
T Consensus 1 m~~igiD~GGT~~~~~l~d~~G~i---l~~~~~~~~~~~~----~~~i~~~i~~~~~~~~~~~ 56 (289)
T 2aa4_A 1 MTTLAIDIGGTKLAAALIGADGQI---RDRRELPTPASQT----PEALRDALSALVSPLQAHA 56 (289)
T ss_dssp CCEEEEEECSSEEEEEEECTTCCE---EEEEEEECCSSCC----HHHHHHHHHHHHTTTGGGC
T ss_pred CCEEEEEECCCCEEEEEECCCCCE---EEEEEEECCCCCC----HHHHHHHHHHHHHHHHHHC
T ss_conf 969999988003899999799969---9999997898878----9999999999999988655
No 15
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis V583}
Probab=94.26 E-value=0.12 Score=29.86 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=44.4
Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 699997888720589999719968999833687388999888999999989998622796
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~P 65 (169)
+|||||-|-++|=++++|..++ ++....+.++...+...-+..|.+.+..+++++..
T Consensus 7 ~vLgiD~GgT~~~~~l~d~~G~---il~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~ 63 (326)
T 2qm1_A 7 KIIGIDLGGTTIKFAILTTDGV---VQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNM 63 (326)
T ss_dssp EEEEEEECSSEEEEEEEETTCC---EEEEEEEECCCTTTTTTHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEECCCEEEEEEECCCCC---EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5999998734289999939997---99999971798889899999999999999997157
No 16
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuclease-H fold, sugar kinase, glucose, conformational change; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=93.02 E-value=0.073 Score=31.09 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=38.2
Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC---CCEEEEE
Q ss_conf 8069999788872058999971996899983368738899988899999998999862279---6277885
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR---PEEAAVE 71 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~---Pd~vaiE 71 (169)
+|.+||||-|-++|=++++|.+++- +... +.++......-+..+.+.+.+++++.. ++.+.+-
T Consensus 1 mm~~iGIDiGgT~~~~~l~d~~G~i---l~~~--~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~gig 66 (299)
T 2e2o_A 1 MMIIVGVDAGGTKTKAVAYDCEGNF---IGEG--SSGPGNYHNVGLTRAIENIKEAVKIAAKGEADVVGMG 66 (299)
T ss_dssp CCCEEEEEECSSCEEEEEECTTSCE---EEEE--EESCCCHHHHCHHHHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CCEEEEEEECHHHEEEEEECCCCCE---EEEE--EECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 9299999937003799999499989---9999--9278996522099999999999998558985489870
No 17
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus VF5} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=92.13 E-value=0.66 Score=25.17 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=57.5
Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHCCCCCEE-EEE
Q ss_conf 8806999978887205899997199689998336873889998----------88999999989998622796277-885
Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL----------AFRLCQLYEGLTDVIKNWRPEEA-AVE 71 (169)
Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~----------~~Rl~~I~~~l~~ii~~~~Pd~v-aiE 71 (169)
..|||=.||-|++.+=..|.+..++++..+..-...+.-.... -+|+...-..+.+++++|+++.+ ++=
T Consensus 10 ~~mriAvIDIGSNsirl~I~~~~~~~~~~l~~~~~~~rLg~~~~~~g~l~~~~i~~~~~~L~~f~~~~~~~~v~~i~~vA 89 (315)
T 1t6c_A 10 PIMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVA 89 (315)
T ss_dssp CCEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 74589999976440899999825997302411157875212653159809999999999999999998750746199970
Q ss_pred HHHH--CCCHHHH
Q ss_conf 0332--0241247
Q gi|254780554|r 72 QVFV--NKDAVAT 82 (169)
Q Consensus 72 ~~F~--~~n~~t~ 82 (169)
.--+ .+|.+..
T Consensus 90 TsA~R~A~N~~~~ 102 (315)
T 1t6c_A 90 TEAIRRAKNAEEF 102 (315)
T ss_dssp CHHHHTSTTHHHH
T ss_pred HHHHHHCCCHHHH
T ss_conf 2998847566599
No 18
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=91.87 E-value=0.67 Score=25.14 Aligned_cols=51 Identities=24% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 80699997888720589999719968999833687388999888999999989998
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~i 59 (169)
.|.+||||-|++.|-.+++|. +++ ++.+...++....... ...+.+.|.+.
T Consensus 2 ~m~~lGID~GsT~tk~vv~de-~~~--i~~~~~~~~~~~~~~~--~~~i~~~l~~~ 52 (270)
T 1hux_A 2 SIYTLGIDVGSTASKCIILKD-GKE--IVAKSLVAVGTGTSGP--ARSISEVLENA 52 (270)
T ss_dssp CCEEEEEEECSSEEEEEEEET-TTE--EEEEEEEECCSSCCHH--HHHHHHHHHHH
T ss_pred CCEEEEEEECHHHEEEEEEEC-CCE--EEEEEEEECCCCHHHH--HHHHHHHHHHC
T ss_conf 828999994813699999968-994--9999997358984789--99999999970
No 19
>3eo3_A Bifunctional UDP-N-acetylglucosamine 2- epimerase/N-acetylmannosamine kinase; non-protein kinase, sialic acid biosynthesis; 2.84A {Homo sapiens}
Probab=91.78 E-value=0.52 Score=25.84 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=41.3
Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 988069999788872058999971996899983368738899988899999998999862279
Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64 (169)
Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169)
+.+|..||||-|=+++=++++|..+.-+ ...... ...+..+.+..|.+.+.+.+.+..
T Consensus 17 ~~~~~~lGIDiGGT~~~~al~d~~G~vl---~~~~~~--~~~~~~~~~~~i~~~i~~~~~~~~ 74 (333)
T 3eo3_A 17 QGTLSALAVDLGGTNLRVAIVSMKGEIV---KKYTQF--NPKTYEERINLILQMCVEAAAEAV 74 (333)
T ss_dssp --CCEEEEEEECSSEEEEEEEETTSCEE---EEEEEE--CCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCEEEEEEECCCCCEE---EEEEEC--CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8885499999771139999995999799---999968--999978999999999999999861
No 20
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=90.92 E-value=0.89 Score=24.38 Aligned_cols=61 Identities=23% Similarity=0.219 Sum_probs=33.7
Q ss_pred CCE-EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 806-9999788872058999971996899983368738-----89---9988899999998999862279627
Q gi|254780554|r 4 SIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWRPEE 67 (169)
Q Consensus 4 ~Mr-ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~Pd~ 67 (169)
.|+ |||||-|++++=.+++|.+++- +.......+ .. .+..+=...+.+.+.++.++...+.
T Consensus 2 ~mkYvlgIDiGTts~Ka~l~d~~g~i---v~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~i 71 (504)
T 3ll3_A 2 SLKYIIGMDVGTTATKGVLYDINGKA---VASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKIDGKI 71 (504)
T ss_dssp CCEEEEEEEECSSEEEEEEEETTSCE---EEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCSSEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCE---EEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 97789999753444276699189989---99999847840699996247999999999999999996378870
No 21
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=90.88 E-value=0.9 Score=24.36 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=38.8
Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 988069999788872058999971996899983368738899988899999998999862279
Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64 (169)
Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169)
+++..|||||-|-+++=++++|.+++... .+.-.+.|+...+...=+..|.+-+.++...+.
T Consensus 9 ~~~~~viGiDiGGT~i~~~l~d~~~~~i~-~~~~~~~t~~~~~~~~i~~~i~~~i~~l~~~~~ 70 (267)
T 1woq_A 9 HKNAPLIGIDIGGTGIKGGIVDLKKGKLL-GERFRVPTPQPATPESVAEAVALVVAELSARPE 70 (267)
T ss_dssp --CCCEEEEEECSSEEEEEEEETTTTEEE-EEEEEEECCSSCCHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCEEEEEECCCEEEEEEEECCCCEEE-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 89998999998776599999989999899-999996789999999999999999999875026
No 22
>3lm2_A Putative kinase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, transferase; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Probab=89.83 E-value=0.39 Score=26.59 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=43.1
Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 998806999978887205899997199689998336873889998889999999899986227962778850
Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ 72 (169)
Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~ 72 (169)
|..+..|||||-|-+++-+++++..+ +. .+.++...+. ..+.+.+.++++++.++.++|=-
T Consensus 2 m~~~~~vlgiDIGGT~i~~~l~d~~~-~~------~~~t~~~~~~----~~~~~~i~~~i~~~~~~~igi~~ 62 (226)
T 3lm2_A 2 MAEDQTVLAIDIGGSHVKIGLSTDGE-ER------KVESGKTMTG----PEMVAAVTAMAKDMTYDVIAMGY 62 (226)
T ss_dssp CGGGCCEEEEEECSSEEEEEETTTCC-EE------EEECCTTCCH----HHHHHHHHHHTTTCCCSEEEEEE
T ss_pred CCCCCEEEEEEECCCEEEEEEEECCC-CE------EEECCCCCCH----HHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 98788599999788569999997998-68------9965899997----99999999999750323518951
No 23
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, actin) superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=87.66 E-value=1.5 Score=22.90 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=52.0
Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC--------CC--HHHHHHHHHHHHHHHHHCCCCC-EEEE
Q ss_conf 98806999978887205899997199689998336873889--------99--8889999999899986227962-7788
Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--------QS--LAFRLCQLYEGLTDVIKNWRPE-EAAV 70 (169)
Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~--------~~--~~~Rl~~I~~~l~~ii~~~~Pd-~vai 70 (169)
.++||+=.||-|+++.=+.|.+..++.++.++.-...+.-. .+ --+|....-.++.++++.|+++ ..++
T Consensus 8 ~~~~~~AvIDiGSNSirl~I~~~~~~~~~~i~~~k~~vrLg~~l~~~g~l~~~~i~~~~~~L~~f~~~~~~~~v~~~~~v 87 (513)
T 1u6z_A 8 PRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIV 87 (513)
T ss_dssp ----CEEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCCBCHHHHHHHHHHHHHHHHHTTTCCGGGEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99887999997555089999995599720200037897432465546991999999999999999999986799889998
Q ss_pred E
Q ss_conf 5
Q gi|254780554|r 71 E 71 (169)
Q Consensus 71 E 71 (169)
=
T Consensus 88 A 88 (513)
T 1u6z_A 88 G 88 (513)
T ss_dssp E
T ss_pred E
T ss_conf 1
No 24
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, SGC, transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=86.98 E-value=1.1 Score=23.74 Aligned_cols=52 Identities=10% Similarity=0.143 Sum_probs=34.2
Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 880699997888720589999719968999833687388999888999999989998622796277885
Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71 (169)
Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE 71 (169)
..|| +|||-|-|++=++++|..+.. +.. ..+ ..+ +.+.+++++++++.+.+=
T Consensus 19 ~~m~-IGIDiGGT~ik~~~~d~~g~i---~~~--~~~-------~~~----~~i~~~i~~~~i~~Igi~ 70 (287)
T 2ews_A 19 SHMK-VGIDAGGTLIKIVQEQDNQRT---FKT--ELT-------KNI----DQVVEWLNQQQIEKLCLT 70 (287)
T ss_dssp --CE-EEEEECSSEEEEEEECSSCEE---EEE--EEG-------GGH----HHHHHHHHTSCCSEEEEE
T ss_pred CCEE-EEEEECHHHEEEEEEECCCCE---EEE--EEH-------HHH----HHHHHHHHHHCCCEEEEE
T ss_conf 9779-999987355899999099989---998--605-------369----999999876068889998
No 25
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide- binding, phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A* 1nga_A* ...
Probab=86.15 E-value=0.41 Score=26.48 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=15.0
Q ss_pred CCEEEEECCCCCEEEEEEEE
Q ss_conf 80699997888720589999
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVD 23 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie 23 (169)
+|.|+|||-|++++..|+.+
T Consensus 22 ~m~viGIDfGTt~s~va~~~ 41 (404)
T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQ 41 (404)
T ss_dssp -CCCEEEEECSSEEEEEEEE
T ss_pred CCCEEEEECCCCCEEEEEEE
T ss_conf 99899999281368999998
No 26
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=85.39 E-value=2 Score=22.16 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=37.5
Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99880699997888720589999719968999833687388--999888999999989998622796277885
Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71 (169)
Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~--~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE 71 (169)
|...--|+|||-|++++=.+++|.++++. +..+....+. ..+..+=...+.+.++++....++..+++=
T Consensus 1 m~~~~lv~GiD~GTss~Ka~l~d~~~g~i--~~~~~~~~p~~~eqd~~~~~~~~~~~~~~~~~~~~I~aIgit 71 (515)
T 3i8b_A 1 MSLRTLVAGVDTSTQSCKVRVTDAETGEL--VRFGQAKHPNGTSVDPSYWWSAFQEAAEQAGGLDDVSALAVG 71 (515)
T ss_dssp -CCSCEEEEEEECSSEEEEEEEETTTCCE--EEEEEEECCSSSEECTHHHHHHHHHHHHHTTCSTTEEEEEEE
T ss_pred CCCCCEEEEEEECHHCEEEEEEECCCCEE--EEEEECCCCCCEEECHHHHHHHHHHHHHHCCCHHCCEEEEEE
T ss_conf 99785899998600021637898999979--999962498988899999999999999962773134699998
No 27
>3p4i_A Acetate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, no pathogenic species; 2.35A {Mycobacterium avium}
Probab=84.85 E-value=2 Score=22.22 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=38.0
Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC-----CCCCCHHHHHHHHHHHHHHH
Q ss_conf 8806999978887205899997199689998336873-----88999888999999989998
Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-----CVRQSLAFRLCQLYEGLTDV 59 (169)
Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t-----~~~~~~~~Rl~~I~~~l~~i 59 (169)
.+||||-|.||++++=|+++|.+... ....|.++. ..-.++.+++..+.+.|.+-
T Consensus 11 ~~~kILviN~GSSS~K~alf~~~~~~--~~~~g~~e~i~~~~~~~~~~~~~~~~il~~L~~~ 70 (392)
T 3p4i_A 11 GARRVLVINSGSSSLKFQLVDPESGV--AASTGIVERIGEESSPVPDHDAALRRAFDMLAGD 70 (392)
T ss_dssp -CCEEEEEEECSSCEEEEEECTTTCC--EEEEEEECCC--CCCSCCSHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHEEEEEECCCCC--EECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 78879999476140563689389985--6502565322898887889999999999999865
No 28
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, ribonuclease H fold, sugar kinase/HSP70/actin superfamily, domain rotation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=84.23 E-value=1.1 Score=23.93 Aligned_cols=56 Identities=13% Similarity=0.041 Sum_probs=37.4
Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 699997888720589999719968999833687388--99988899999998999862279
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKNWR 64 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~--~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169)
..||||-|-|+|=++++|.+++ ++......+.. .....+-+..|.+.+.+++++..
T Consensus 7 ~~iGIDiGGTk~~~~l~d~~G~---il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~g 64 (347)
T 2ch5_A 7 IYGGVEGGGTRSEVLLVSEDGK---ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAG 64 (347)
T ss_dssp EEEEEEECTTCEEEEEEETTSC---EEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCHHEEEEEECCCCC---EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 8999990612128889949999---999999468996658999999999999999999749
No 29
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=82.15 E-value=0.65 Score=25.23 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.3
Q ss_pred CCEEEEECCCCCEEEEEEEEE
Q ss_conf 806999978887205899997
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDV 24 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~ 24 (169)
.||||-|.||++++=|+++|.
T Consensus 1 m~kILvIN~GSSS~K~alf~~ 21 (381)
T 1saz_A 1 MFRILTINPGSTSTKLSIFED 21 (381)
T ss_dssp CCEEEEEEECSSEEEEEEEET
T ss_pred CCEEEEECCCCHHHEEEEEEC
T ss_conf 974999857817562378938
No 30
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=81.97 E-value=2.8 Score=21.29 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=36.9
Q ss_pred CCCE--EEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC-----CCC---CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8806--999978887205899997199689998336873-----889---9988899999998999862279
Q gi|254780554|r 3 KSIR--IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-----CVR---QSLAFRLCQLYEGLTDVIKNWR 64 (169)
Q Consensus 3 ~~Mr--ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t-----~~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169)
-+|. +||||-|++++=.+++|.+++. +....... ... .+..+=...+.+.++++++++.
T Consensus 2 ~~M~kyvlgIDiGTss~Ka~l~d~~g~i---~~~~~~~~~~~~~~~g~~Eqd~~~~~~~~~~~i~~~~~~~~ 70 (501)
T 3g25_A 2 NAMEKYILSIDQGTTSSRAILFNQKGEI---AGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINEND 70 (501)
T ss_dssp -CCCCEEEEEEECSSEEEEEEECTTSCE---EEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCE---EEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 8727279999831103100078599989---99999727713589980888999999999999999998759
No 31
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.30A {Porphyromonas gingivalis W83} SCOP: c.55.1.5 c.55.1.5
Probab=81.92 E-value=2.8 Score=21.29 Aligned_cols=60 Identities=20% Similarity=0.122 Sum_probs=35.7
Q ss_pred EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99997888720589999719968999833687388-9998889999999899986227962778
Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-RQSLAFRLCQLYEGLTDVIKNWRPEEAA 69 (169)
Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~-~~~~~~Rl~~I~~~l~~ii~~~~Pd~va 69 (169)
||++|=|-++|=|++++ +++.+.....| -.++ ..+..+-...|.+.+.+.+.....+..+
T Consensus 2 iL~vDgGGTKT~~~l~~-~g~~i~~~~~~--~~N~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 62 (291)
T 1zbs_A 2 ILIGDSGSTKTDWCIAK-EGKSLGRFQTS--GINPFQQDRNEIDTALRSEVLPAIGQKASSIRA 62 (291)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEEE--CCCTTTSCHHHHHHHHTTTTHHHHTTSTTTCCE
T ss_pred EEEEEECHHHEEEEEEC-CCCEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 89999363257899998-99789999748--888201799999999999999998636888416
No 32
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=81.38 E-value=1.1 Score=23.76 Aligned_cols=60 Identities=8% Similarity=0.127 Sum_probs=40.1
Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 8069999788872058999971996899983368738899988899999998999862279627
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~ 67 (169)
.-.|+|||-|-+++=++++|..++- +....+.++. ...+.-+..|.+.+.++++++..+.
T Consensus 6 ~~~v~GIDiGgt~i~~~l~d~~g~i---~~~~~~~~~~-~~~~~~~~~i~~~i~~~~~~~~~~i 65 (310)
T 3htv_A 6 HNVVAGVDMGATHIRFCLRTAEGET---LHCEKKRTAE-VIAPGLVSGIGEMIDEQLRRFNARC 65 (310)
T ss_dssp EEEEEEEEECSSEEEEEEEETTSCE---EEEEEEEHHH-HHTTCHHHHHHHHHHHHHHHHTEEE
T ss_pred CCEEEEEEECCCEEEEEEECCCCCE---EEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9899999976667999999299989---9999961888-7889999999999999998759973
No 33
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=80.63 E-value=2.9 Score=21.26 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=7.9
Q ss_pred EEEECCCCCEEEEEEEEE
Q ss_conf 999978887205899997
Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDV 24 (169)
Q Consensus 7 ILGIDPGl~~tG~avie~ 24 (169)
++=+|-|-..|-.+|++.
T Consensus 411 vaViDiGGGTTDvSI~~~ 428 (607)
T 1nbw_A 411 LAILDLGAGSTDAAIVNA 428 (607)
T ss_dssp EEEEEECSSEEEEEEECS
T ss_pred EEEEEECCCCEEEEEEEC
T ss_conf 499995898379999969
No 34
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=80.24 E-value=3.2 Score=20.92 Aligned_cols=81 Identities=19% Similarity=0.093 Sum_probs=54.9
Q ss_pred CCCEEEEECCCCCEEEEEEEEEECC-EEEEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHCCCCCE-EEE
Q ss_conf 8806999978887205899997199-689998336873889998----------8899999998999862279627-788
Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSL----------AFRLCQLYEGLTDVIKNWRPEE-AAV 70 (169)
Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~-~~~li~~g~I~t~~~~~~----------~~Rl~~I~~~l~~ii~~~~Pd~-vai 70 (169)
++|+|=.||-|++.+=+-|.|..++ .++.++.....+.-.... -+|+..+-+.+.+++++|.++. .++
T Consensus 14 ~~~~iAvIDIGSNSirl~I~e~~~~~~~~~l~~~~~~~rLg~~~~~~g~is~~~i~~~~~~L~~f~~~~~~~~v~~~~~v 93 (343)
T 3cer_A 14 ESVTVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRLGQDVDKTHRFADEALERAYVAAREFAGVIAEHPIDGLRFV 93 (343)
T ss_dssp CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 78879999805540799999987999813400027997766771114990999999999999999999863786559986
Q ss_pred EHHHH--CCCHHHHH
Q ss_conf 50332--02412478
Q gi|254780554|r 71 EQVFV--NKDAVATL 83 (169)
Q Consensus 71 E~~F~--~~n~~t~~ 83 (169)
=.--+ .+|.+..+
T Consensus 94 ATsA~R~A~N~~~~l 108 (343)
T 3cer_A 94 ATSATRDAENREEFE 108 (343)
T ss_dssp ECHHHHHCTTHHHHH
T ss_pred HHHHHHHCCCCCCHH
T ss_conf 349998651540099
No 35
>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}
Probab=78.98 E-value=3.6 Score=20.67 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=33.2
Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC--------------------CCCCCHHHHHHHHHHHHHH
Q ss_conf 06999978887205899997199689998336873--------------------8899988899999998999
Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS--------------------CVRQSLAFRLCQLYEGLTD 58 (169)
Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t--------------------~~~~~~~~Rl~~I~~~l~~ 58 (169)
||||-|-||++++=|+++|.++.+. +..|.++. ..-.++.+++..+.+.|.+
T Consensus 1 MkILviN~GSSS~K~alf~~~~~~~--l~~g~~e~ig~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~il~~L~~ 72 (403)
T 2iir_A 1 MRVLVINSGSSSIKYQLIEMEGEKV--LCKGIAERIGIEGSRLVHRVGDEKHVIERELPDHEEALKLILNTLVD 72 (403)
T ss_dssp CEEEEEEEETTEEEEEEEETTTTEE--EEEEEEECTTSTTCEEEEEETTEEEEEECCCCSHHHHHHHHHHHHHC
T ss_pred CEEEEECCCHHHHEEEEEECCCCCE--EEEEEEEEECCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9199985783746428897799847--88888988459986489993882136621579999999999999985
No 36
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=78.33 E-value=3.7 Score=20.55 Aligned_cols=59 Identities=8% Similarity=0.142 Sum_probs=45.2
Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 806999978887205899997199689998336873889998889999999899986227962
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd 66 (169)
...+||||-|-+.+-++++|..++ .+....+.++ ..+.++-+..|.+.+.+++.++.++
T Consensus 107 ~~~~iGIdig~~~i~~~l~dl~G~---il~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~~~~~ 165 (429)
T 1z05_A 107 GWQFLSMRLGRGYLTIALHELGGE---VLIDTKIDIH-EIDQDDVLARLLFEIEEFFQTYAAQ 165 (429)
T ss_dssp TEEEEEEEEETTEEEEEEEETTSC---EEEEEEEECC-CCBHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEEEEEECCCEEEEEEECCCCC---EEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 049999998999899999849987---8999983488-7887899999999999999975766
No 37
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3lm9_A*
Probab=77.79 E-value=3.9 Score=20.45 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=39.2
Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 806999978887205899997199689998336873889998889999999899986227962778850
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ 72 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~ 72 (169)
+.-++|||-|-+++=++++|..++- ++...+.|.. ++ ...+.+.+.+++++...+.|--
T Consensus 2 ~~l~~GiDiGgT~i~~~l~d~~G~i---l~~~~~pt~~----~~---~~~~~i~~~~~~~~i~~igi~~ 60 (302)
T 3epq_A 2 NAMLGGIEAGGTXFVCAVGREDGTI---IDRIEFPTXM----PD---ETIEXVIQYFSQFSLQAIGIGS 60 (302)
T ss_dssp -CCEEEEEECSSEEEEEEECTTSCE---EEEEEEECCC----HH---HHHHHHHHHHTTSCCSEEEEEE
T ss_pred CCEEEEEEECCCEEEEEEECCCCCE---EEEEEECCCC----HH---HHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9779999967747999999699939---9999966899----79---9999999999872576547911
No 38
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=76.71 E-value=4.1 Score=20.27 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=39.6
Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8069999788872058999971996899983368738899988899999998999862279
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169)
+-.|||||-|-+++=++++|..+. +++.-.+.+. .+....-+..|.+.+.++...+.
T Consensus 8 ~~~vlgiDIGGT~i~~al~d~~g~---i~~~~~~pt~-~~~~~~~l~~i~~~i~~~~~~~~ 64 (366)
T 3mcp_A 8 NRIVMTLDAGGTNFVFSAIQGGKE---IADPVVLPAC-ADCLDKCLGNLVEGFKAIQAGLP 64 (366)
T ss_dssp CCEEEEEECSSSEEEEEEEETTEE---CSCCEEEECC-TTCHHHHHHHHHHHHHHHHTTCS
T ss_pred CCEEEEEEECCCEEEEEEEECCCC---EEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 988999998731499999908995---9999997589-88999999999999999985478
No 39
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=75.76 E-value=3.2 Score=20.99 Aligned_cols=24 Identities=13% Similarity=0.499 Sum_probs=21.2
Q ss_pred CEEEEECCCCCEEEEEEEEEECCE
Q ss_conf 069999788872058999971996
Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDN 28 (169)
Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~ 28 (169)
|+||-|.||++++=|+++|..+.+
T Consensus 1 MkILvIN~GSSS~K~alf~~~~~~ 24 (408)
T 1g99_A 1 MKVLVINAGSSSLKYQLIDMTNES 24 (408)
T ss_dssp CEEEEEEECSSCEEEEEEETTTTE
T ss_pred CEEEEECCCHHHHEEEEEECCCCC
T ss_conf 909998477572641789789986
No 40
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinase-HSP70- actin superfamily, L-rhamnulose kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=75.10 E-value=2.8 Score=21.27 Aligned_cols=23 Identities=9% Similarity=0.097 Sum_probs=20.1
Q ss_pred EEEEECCCCCEEEEEEEEEECCE
Q ss_conf 69999788872058999971996
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDN 28 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~ 28 (169)
-+||||-|++++=-+++|.+++.
T Consensus 5 ~~lgiDiGTtsvKa~l~d~~g~~ 27 (489)
T 2uyt_A 5 NCVAVDLGASSGRVMLARYEREC 27 (489)
T ss_dssp EEEEEEECSSEEEEEEEEEEGGG
T ss_pred EEEEEECCCCCEEEEEEECCCCE
T ss_conf 69999776435265899679988
No 41
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=71.66 E-value=5.5 Score=19.49 Aligned_cols=59 Identities=5% Similarity=0.027 Sum_probs=42.0
Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 806999978887205899997199689998336873889998889999999899986227962
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd 66 (169)
.-.++|||-|-+.+-++++|..++- +....+.++...+ .+-+..+.+.+.+++.++..+
T Consensus 84 ~~~~igv~i~~~~i~~~l~dl~g~i---i~~~~~~~~~~~~-~~~l~~i~~~i~~~~~~~~~~ 142 (406)
T 1z6r_A 84 AWHYLSLRISRGEIFLALRDLSSKL---VVEESQELALKDD-LPLLDRIISHIDQFFIRHQKK 142 (406)
T ss_dssp TCEEEEEEEETTEEEEEEEETTCCE---EEEEEEECCSSCS-SCHHHHHHHHHHHHHHHTGGG
T ss_pred CCEEEEEEECCCEEEEEEECCCCCE---EEEEEEECCCCCH-HHHHHHHHHHHHHHHHHCCCC
T ss_conf 6689999988988999998699988---9889984367986-999999999999999965775
No 42
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=68.34 E-value=6.5 Score=19.05 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=13.5
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 0677765316888899999999999628
Q gi|254780554|r 108 PNTIKKAVIGVGHGDKKQIHMMLKMLMP 135 (169)
Q Consensus 108 P~~vKkavtG~G~A~KeqV~~mV~~ll~ 135 (169)
+..+-..+.=-|.+.=..+..++...|.
T Consensus 546 ~~dIdgVVLVGGSSrlpgI~eLVte~L~ 573 (610)
T 2d0o_A 546 IRDIPFVVLVGGSSLDFEVPQLVTDALA 573 (610)
T ss_dssp GGGCCEEEEESGGGGCSSHHHHHHHHTT
T ss_pred CCCCCEEEEECHHHHHHCHHHHHHHHHC
T ss_conf 0348909998825411069999999847
No 43
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=66.60 E-value=7.1 Score=18.84 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=39.7
Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 0699997888720589999719968999833687388999888999999989998622
Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62 (169)
Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~ 62 (169)
--++|||-|-+++-++++|..++ .+....+.++...+..+-+..|.+.++++++.
T Consensus 87 ~~~igidig~~~i~~~l~d~~g~---vi~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 141 (380)
T 2hoe_A 87 AYVLGIEVTRDEIAACLIDASMN---ILAHEAHPLPSQSDREETLNVMYRIIDRAKDM 141 (380)
T ss_dssp CEEEEEEECSSEEEEEEEETTCC---EEEEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCEEEEEEECCCCC---EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78999999999899999949998---99999875798888899999999999999998
No 44
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain DSM 12444, SGX, transferase, structural genomics; 2.50A {Novosphingobium aromaticivorans DSM12444}
Probab=66.31 E-value=3.3 Score=20.91 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=18.9
Q ss_pred EEEEECCCCCEEEEEEEEEECCEE
Q ss_conf 699997888720589999719968
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNL 29 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~ 29 (169)
-+|+||-|++++=.+++|.+++..
T Consensus 7 ~~l~iD~GTts~Ka~l~d~~g~~i 30 (482)
T 3h6e_A 7 ATIVIDLGKTLSKVSLWDLDGRML 30 (482)
T ss_dssp -CEEEEECSSEEEEEEECTTSCEE
T ss_pred EEEEEECCHHHHHHEEEECCCCEE
T ss_conf 699998612210040681889899
No 45
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=65.25 E-value=2.3 Score=21.80 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=14.2
Q ss_pred EEEEECCCCCEEEEEEEE
Q ss_conf 699997888720589999
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVD 23 (169)
Q Consensus 6 rILGIDPGl~~tG~avie 23 (169)
.|+|||-|+++++.|+.+
T Consensus 3 ~viGIDfGTt~s~va~~~ 20 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMD 20 (383)
T ss_dssp CCCEEECCSSEEEEEEEE
T ss_pred CEEEEECCCCCEEEEEEE
T ss_conf 999998560288999999
No 46
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=63.11 E-value=8.2 Score=18.43 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=52.7
Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCC--------CH--HHHHHHHHHHHHHHHHCCCCCEEE-EEHHH
Q ss_conf 69999788872058999971996899983368738899--------98--889999999899986227962778-85033
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--------SL--AFRLCQLYEGLTDVIKNWRPEEAA-VEQVF 74 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~--------~~--~~Rl~~I~~~l~~ii~~~~Pd~va-iE~~F 74 (169)
||=-||-|++.+=.-|.|..++++..+......+.-.. +. -+|+..+-+.+.+++++|+|+.+. +=.--
T Consensus 5 riAvIDiGSNsirl~I~~~~~~~~~~l~~~~~~~rLg~~~~~~g~is~~~i~~~~~~L~~f~~~~~~~~v~~~~~vaTsA 84 (315)
T 3mdq_A 5 RIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKGFITEEAMDRALDTLKKFRVILDEHAVVHVIATGTSA 84 (315)
T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSSTTTGGGTCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECHH
T ss_pred EEEEEEECCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 49999955540899999965998358888889976667751149949999999999999999987643774698756599
Q ss_pred H--CCCHHHHH
Q ss_conf 2--02412478
Q gi|254780554|r 75 V--NKDAVATL 83 (169)
Q Consensus 75 ~--~~n~~t~~ 83 (169)
+ .+|.+..+
T Consensus 85 ~R~A~N~~~~~ 95 (315)
T 3mdq_A 85 VRSGSNKQVLI 95 (315)
T ss_dssp HHHCTTHHHHH
T ss_pred HHHCCCHHHHH
T ss_conf 99664738899
No 47
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=61.56 E-value=8.8 Score=18.26 Aligned_cols=59 Identities=7% Similarity=0.002 Sum_probs=33.3
Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEE--EEEEEEECCCC---CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 69999788872058999971996899--98336873889---9988899999998999862279
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCF--VSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNWR 64 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~l--i~~g~I~t~~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169)
-+||||-|++++=.+++|.+++.... ..+-.+..... .+..+=...+.+.+.++++++.
T Consensus 3 y~lgIDiGTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~l~~~~ 66 (495)
T 2dpn_A 3 FLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAG 66 (495)
T ss_dssp CEEEEEECSSEEEEEEECTTSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEEEECCEECCCCCCEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999974232334448808899999999745604589993899999999999999999999749
No 48
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=60.04 E-value=1.6 Score=22.88 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEECCCCCEEEEEEEEEECCEEEE
Q ss_conf 9999788872058999971996899
Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCF 31 (169)
Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~l 31 (169)
||+||=|.++|=|.++| +++.+..
T Consensus 2 IL~IDgGGTKT~~vl~d-~g~~i~~ 25 (291)
T 1zxo_A 2 ILIADSGSTKTDWCVVL-NGAVIKR 25 (291)
T ss_dssp --CEECCTTCEEEEEEC-SSSEEEE
T ss_pred EEEEEECHHHEEEEEEE-CCCEEEE
T ss_conf 89999452256899994-9968999
No 49
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10
Probab=59.71 E-value=6.6 Score=19.03 Aligned_cols=68 Identities=18% Similarity=0.057 Sum_probs=35.8
Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEE----E-EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 806999978887205899997199689998----3-3687388999888999999989998622796277885033
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVS----S-GTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~----~-g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F 74 (169)
..-|+.+||++..+|-+++... .+... - ..|+..........+..-....-.+++....|.+.+|.+=
T Consensus 86 ~vavlavDpss~~sggailgDr---~Rm~~l~~~~~~~ir~~~s~~~lgg~~~~~~~~v~~l~~~g~D~iliETVG 158 (341)
T 2p67_A 86 KVAVIAVDPSSPVTGGSILGDK---TRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVG 158 (341)
T ss_dssp CEEEEEECCC------------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEEC
T ss_pred CEEEECCCCCCCCCCCCCCHHH---HHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 6014416886640244362126---789875157753541366654443203656889999875599731221026
No 50
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=58.17 E-value=7.4 Score=18.69 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=15.7
Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEE
Q ss_conf 6999978887205899997199689998
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVS 33 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~ 33 (169)
.||=+|-|-..+-.+|++..++.++.+.
T Consensus 162 ~vlV~D~GgGT~DvSiv~~~~~~~~vl~ 189 (509)
T 2v7y_A 162 TILVYDLGGGTFDVSILELGDGVFEVKA 189 (509)
T ss_dssp EEEEEEECSSCEEEEEEEEETTEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEEECCEEEEEE
T ss_conf 8999997998489999998199899999
No 51
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=54.85 E-value=11 Score=17.56 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=19.3
Q ss_pred CC-EEEEECCCCCEEEEEEEEEECC
Q ss_conf 80-6999978887205899997199
Q gi|254780554|r 4 SI-RIIGIDPGLRRTGWGIVDVAGD 27 (169)
Q Consensus 4 ~M-rILGIDPGl~~tG~avie~~~~ 27 (169)
.| -|||||-|++++=.+++|.+++
T Consensus 2 ~M~~vlgID~GTss~Ka~l~d~~g~ 26 (503)
T 2w40_A 2 SMNVILSIDQSTQSTKVFFYDEELN 26 (503)
T ss_dssp -CEEEEEEEECSSEEEEEEEETTCC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 6669999985100210007869998
No 52
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, glycerol metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis KOD1}
Probab=54.66 E-value=11 Score=17.54 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=29.9
Q ss_pred EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999788872058999971996899983368738-----89---9988899999998999862279
Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWR 64 (169)
Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169)
+||||-|++++=.+++|.+++.. .......+ .. .+..+=...+.+.+++++++..
T Consensus 5 ~lgIDiGTss~Ka~l~d~~g~~~---~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~~~~~~~~~~ 67 (497)
T 2zf5_O 5 VLSLDEGTTSARAIIFDRESNIH---GIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSAR 67 (497)
T ss_dssp EEEEEECSSEEEEEEECTTCCEE---EEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCEEEEEEECCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 99998025352766995889999---9999977622689982899999999999999999999759
No 53
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=53.94 E-value=12 Score=17.47 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=38.6
Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 80699997888720589999719968999833687388999888999999989998622796
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~P 65 (169)
+|= ||||-|=+++=++++|..+. ++....+.|+ ..+...=+..|.+.+.++..++..
T Consensus 24 ~~y-lGiDiGGT~i~~al~d~~G~---il~~~~~~t~-~~~~~~~l~~i~~~i~~~~~~~~~ 80 (327)
T 2ap1_A 24 AMY-YGFDIGGTKIALGVFDSTRR---LQWEKRVPTP-HTSYSAFLDAVCELVEEADQRFGV 80 (327)
T ss_dssp CEE-EEEEECSSEEEEEEEETTCC---EEEEEEEECC-CSCHHHHHHHHHHHHHHHHHHHTS
T ss_pred CEE-EEEEECCCEEEEEEECCCCC---EEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 579-99996722499999919998---9999998699-999999999999999999886388
No 54
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=53.60 E-value=9.2 Score=18.13 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHHH
Q ss_conf 9999999996288999--99556789999999764
Q gi|254780554|r 124 KQIHMMLKMLMPESFF--KGKDAADALAIAVCHAY 156 (169)
Q Consensus 124 eqV~~mV~~ll~~~~~--~~~D~aDAlAiAl~h~~ 156 (169)
--|+.+++.+|+.+.. .+.|++=|.+.|+..+.
T Consensus 347 P~Vq~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ 381 (605)
T 2kho_A 347 PMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGV 381 (605)
T ss_dssp HHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 89999999985989677979624899879999763
No 55
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=53.27 E-value=12 Score=17.40 Aligned_cols=81 Identities=6% Similarity=0.037 Sum_probs=53.1
Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHCCCCCE-EEEEH
Q ss_conf 806999978887205899997199689998336873889998----------8899999998999862279627-78850
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL----------AFRLCQLYEGLTDVIKNWRPEE-AAVEQ 72 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~----------~~Rl~~I~~~l~~ii~~~~Pd~-vaiE~ 72 (169)
..+|=-||-|++++=+.|.|..++.++.++.....+.-.... -+|+...-.++.+++++|.++. .++=.
T Consensus 14 ~~~iAvIDiGSNsirl~I~e~~~~~~~~i~~~k~~~rLg~~~~~~g~ls~~~i~~~~~~L~~f~~~~~~~~v~~i~~vaT 93 (508)
T 3hi0_A 14 LAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVLSEQAQAQKLYVLAT 93 (508)
T ss_dssp CCCEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred CCCEEEEEECCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99589999655408999997379985078888899636567642599199999999999999999998679978999916
Q ss_pred HHH--CCCHHHHHH
Q ss_conf 332--024124788
Q gi|254780554|r 73 VFV--NKDAVATLK 84 (169)
Q Consensus 73 ~F~--~~n~~t~~~ 84 (169)
--+ .+|....+.
T Consensus 94 sA~R~A~N~~~~~~ 107 (508)
T 3hi0_A 94 AAAREAENGPDFIR 107 (508)
T ss_dssp THHHHSTTHHHHHH
T ss_pred HHHHCCCCHHHHHH
T ss_conf 99885938999999
No 56
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, disease mutation, mitochondrion, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=53.26 E-value=4.2 Score=20.22 Aligned_cols=76 Identities=9% Similarity=0.040 Sum_probs=41.4
Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEE-EEE-EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC
Q ss_conf 880699997888720589999719968999-833-6873889998889999999899986227962778850332024
Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFV-SSG-TIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD 78 (169)
Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li-~~g-~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n 78 (169)
...=||.+||++..+|=+++...-+-..+- +-+ .++..+......-+..--...-.+++.+..|.+.||.+=.+..
T Consensus 103 ~~vaVla~Dpss~~~gg~llgdriRm~~~~~~~~~~ir~~~~~~~~gg~~~~~~~~i~llea~G~D~i~iEtvG~gq~ 180 (349)
T 2www_A 103 HKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQS 180 (349)
T ss_dssp CCEEEEECCC----------------CCSTTCTTEEEECC---------CTTHHHHHHHHHHTTCSEEEEECCCC--C
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 717899578786626888775388469635787631266644442111025479999987406998699985366502
No 57
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=53.10 E-value=12 Score=17.38 Aligned_cols=61 Identities=15% Similarity=0.039 Sum_probs=37.9
Q ss_pred CEEEEECCCC----CEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 0699997888----7205899997199689998336873889998889999999899986227962778850
Q gi|254780554|r 5 IRIIGIDPGL----RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ 72 (169)
Q Consensus 5 MrILGIDPGl----~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~ 72 (169)
--++|+||+. ..+.+.|++..+...+.+..-....-+-..+. +.+.++...|++..+.||.
T Consensus 420 ~YvigvDvA~G~~~DySai~Vidv~~~~~eqVa~~~~n~i~~~~~a-------~~I~~l~~~YN~a~V~VE~ 484 (592)
T 3cpe_A 420 KYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILP-------DIVMRYLVEYNECPVYIEL 484 (592)
T ss_dssp CEEEEEECCSSBTTBCEEEEEEECSSSSEEEEEEEEESSSCTTTHH-------HHHHHHHHHTTSCCEEEEE
T ss_pred CEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCHHHHH-------HHHHHHHHHCCCCEEEEEE
T ss_conf 0268851244577773279994147876189999835888989999-------9999999972884899997
No 58
>3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=53.06 E-value=12 Score=17.38 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=18.6
Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECC
Q ss_conf 998806999978887205899997199
Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGD 27 (169)
Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~ 27 (169)
|..+.=|||||-|++++=.+++|.+++
T Consensus 1 m~~~~YilgID~GTts~Ka~l~d~~g~ 27 (511)
T 3hz6_A 1 MSLAFYIATFDIGTTEVKAALADRDGG 27 (511)
T ss_dssp -CCCCEEEEEEECSSEEEEEEECTTSC
T ss_pred CCCCEEEEEEEECCCCEEEEEEECCCC
T ss_conf 974537999985120213037818899
No 59
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal binding protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=52.33 E-value=13 Score=17.31 Aligned_cols=56 Identities=13% Similarity=0.321 Sum_probs=38.3
Q ss_pred CCCEEEEECCCCCEEEEEEEEEEC---------------CEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 880699997888720589999719---------------9689998336873889998889999999899986227
Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAG---------------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63 (169)
Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~---------------~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~ 63 (169)
-++||+.|+.+ .|.+|..| +.+-+++.|..-..-.....++...+++++.+..+.|
T Consensus 5 iP~~Vvei~~~-----~A~vd~~G~~r~v~l~lv~~~~vGDyVLVH~G~Ai~~ideeeA~e~l~~~~el~~~~~~~ 75 (75)
T 2z1c_A 5 VPGKVIEVNGP-----VAVVDFGGVKREVRLDLMPDTKPGDWVIVHTGFAIEKLDEKKAMEILEAWAEVEKAMEGF 75 (75)
T ss_dssp CCEEEEEEETT-----EEEEEETTEEEEEECTTSTTCCTTCEEEEETTEEEEEECHHHHHHHHHHHHHHHHHC---
T ss_pred CCEEEEEECCC-----EEEEEECCEEEEEEEEEECCCCCCCEEEEEECCHHEECCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 34699998799-----899990997999999860899999899994070112279999999999999999987359
No 60
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans}
Probab=51.72 E-value=13 Score=17.25 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=34.8
Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC-------------------CCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 699997888720589999719968999833687388-------------------99988899999998999862279
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-------------------RQSLAFRLCQLYEGLTDVIKNWR 64 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~-------------------~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169)
=|||||-|++++=.+++|.++++. +......... ..+..+=...+.+.++++++++.
T Consensus 6 y~LgIDiGTts~Ka~l~D~~~g~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Eqd~~~~~~a~~~~i~~~l~~~~ 81 (572)
T 3jvp_A 6 YTIGVDYGTESGRAVLIDLSNGQE--LADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKESG 81 (572)
T ss_dssp EEEEEEECSSEEEEEEEETTTCCE--EEEEEEECTTCCBSSBSTTSCCBCCTTCCEECHHHHHHHHTTHHHHHHHC--
T ss_pred EEEEEEECCCCEEEEEEECCCCEE--EEEEEEEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 799997246552889998899909--9999986023432224798886789882777899999999999999999849
No 61
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=51.66 E-value=13 Score=17.24 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=34.7
Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEE----------C-------CCCCCHHHHHHHHHHHHHH
Q ss_conf 880699997888720589999719968999833687----------3-------8899988899999998999
Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV----------S-------CVRQSLAFRLCQLYEGLTD 58 (169)
Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~----------t-------~~~~~~~~Rl~~I~~~l~~ 58 (169)
..|.||-|-||++++=|+++|.++.+ .+..|.+. . ....++.+.+..+...|.+
T Consensus 16 ~~~lILVIN~GSSS~K~alf~~~~~~--~l~~g~ve~i~~~~~~~~~~~~~~~~~~~~~~~~al~~il~~L~~ 86 (415)
T 2e1z_A 16 EFPVVLVINCGSSSIKFSVLDVATCD--VLMAGIADGMNTENAFLSINGDKPINLAHSNYEDALKAIAFELEK 86 (415)
T ss_dssp -CCEEEEEEECSSEEEEEEEETTTCC--EEEEEEEESTTSSSCEEEETTSCCEECCSCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCHHHHEEEEEECCCCC--EEEEECCCCCCCCCCEEEEECCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 97169998277061651789789988--677602122589885699717803650302899999999999984
No 62
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural protein; 1.90A {Thermoplasma acidophilum dsm 1728} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=51.09 E-value=6.7 Score=18.98 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=13.2
Q ss_pred CCCEEEEECCCCCEEEE
Q ss_conf 88069999788872058
Q gi|254780554|r 3 KSIRIIGIDPGLRRTGW 19 (169)
Q Consensus 3 ~~MrILGIDPGl~~tG~ 19 (169)
.+|.|+|||.|++.+..
T Consensus 19 ~~~~iiGID~G~~~vKv 35 (346)
T 2fsj_A 19 SHMVVVGLDVGYGDTKV 35 (346)
T ss_dssp --CEEEEEEECSSEEEE
T ss_pred CCCEEEEEECCCCCEEE
T ss_conf 98889999958572899
No 63
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=50.76 E-value=13 Score=17.15 Aligned_cols=55 Identities=18% Similarity=0.118 Sum_probs=24.2
Q ss_pred EEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC---C-----CCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9997888720589999719968999833687388---9-----99888999999989998622796
Q gi|254780554|r 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV---R-----QSLAFRLCQLYEGLTDVIKNWRP 65 (169)
Q Consensus 8 LGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~---~-----~~~~~Rl~~I~~~l~~ii~~~~P 65 (169)
||||-|++++=.+++|.+++ ++.....+.+. + .+..+=+..+.+.++++.+++.+
T Consensus 3 lgiDiGTtsiKa~l~d~~g~---~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~~~~l~~~~~~ 65 (484)
T 2itm_A 3 IGIDLGTSGVKVILLNEQGE---VVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSL 65 (484)
T ss_dssp EEEEECSSEEEEEEECTTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCEEEEEECCCCC---EEEEEEEECCEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99983343424548819898---9999998435155899838989999999999999999976796
No 64
>3c6a_A Terminase large subunit; terminase nuclease, viral protein; 1.16A {Enterobacteria phage RB49} PDB: 3c6h_A
Probab=50.28 E-value=13 Score=17.11 Aligned_cols=59 Identities=12% Similarity=-0.019 Sum_probs=34.4
Q ss_pred CEEEEECCCC----CEEEEEEEEEECCEEEEEEEEEEECCCC--CCHHHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 0699997888----7205899997199689998336873889--998889999999899986227962778850
Q gi|254780554|r 5 IRIIGIDPGL----RRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ 72 (169)
Q Consensus 5 MrILGIDPGl----~~tG~avie~~~~~~~li~~g~I~t~~~--~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~ 72 (169)
.=++|+||+. ..+-+-|+|......+.|. ..+-+.- ..++++ +.++...|++-.+.+|.
T Consensus 60 ~YvigvD~A~G~g~DyS~i~V~Dvt~~~~~qVA--~~r~n~i~p~~~a~i-------i~~i~~~Yn~a~v~vE~ 124 (232)
T 3c6a_A 60 KYVATLDCSEGRGQDYHALQIIDITEFPYKQVA--VYHSNTTSHFILPDI-------VFKYLMMYNECPVYIEL 124 (232)
T ss_dssp CEEEEEECCCSSSSCCEEEEEEECSSSSEEEEE--EEEESCCCTTTHHHH-------HHHHHHHTTSCCEEEBC
T ss_pred EEEEEEECCCCCCCCCCEEEEEECCCCCCEEEE--EECCCCCCHHHHHHH-------HHHHHHHHCCCEEEEEE
T ss_conf 499999747876888787999976798714899--974036687899999-------99999870557399997
No 65
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A*
Probab=46.93 E-value=7.3 Score=18.76 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=39.9
Q ss_pred CCEEEEECCCCCEEEEEEEEEECC-EEEEEEE-EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 806999978887205899997199-6899983-3687388999888999999989998622796277885033
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSS-GTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~-~~~li~~-g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F 74 (169)
..-|+.+||++..+|-+++...-+ .....+- ..++..+.......+..--.....+++....|.+.+|.+=
T Consensus 109 ~VavlavDPss~~sggailgDr~Rm~~~~~~~~~~ir~~~trg~~gg~~~~~~~~~~ll~~~G~d~iiiETVG 181 (355)
T 3p32_A 109 RVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVG 181 (355)
T ss_dssp CEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred CEEEEECCCCCCCCHHHCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 6568846888742120121001247775058863576158766320244421446777875399802343035
No 66
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural genomics, transferase, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum atcc 11170}
Probab=44.48 E-value=17 Score=16.55 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=32.1
Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 069999788872058999971996899983368738-----89---9988899999998999862279
Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWR 64 (169)
Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169)
-=|||||-|++++=.+++|.+++ ++.......+ +. .+..+=...+.+.+.++.+++.
T Consensus 7 kyvlgIDiGTts~Ka~l~d~~g~---il~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~l~~~~~ 71 (508)
T 3ifr_A 7 RQVIGLDIGTTSTIAILVRLPDT---VVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAG 71 (508)
T ss_dssp CEEEEEEECSSEEEEEEEETTTE---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEECCCCCEEEEEEECCCC---EEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 88999987223427789958999---999999856712599981899999999999999999999638
No 67
>1e4f_T Cell division protein FTSA; bacterial cell division, actin family; 1.9A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1e4g_T*
Probab=41.67 E-value=18 Score=16.28 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=29.0
Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC
Q ss_conf 998806999978887205899997199689998336873
Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS 39 (169)
Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t 39 (169)
|.++=-+.|||-|++..=..+.+..+++++.+..|...+
T Consensus 4 m~k~~~~vgiDIGSs~Ik~vv~~~~~~~~~iig~g~~ps 42 (419)
T 1e4f_T 4 LSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKS 42 (419)
T ss_dssp ---CEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEEECC
T ss_conf 776886999998756199999997599389999997456
No 68
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4 c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=40.00 E-value=19 Score=16.12 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=33.0
Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 69999788872058999971996899983368738-----89---9988899999998999862279
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWR 64 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169)
=+||||-|++++=.+++|.+++.. .......+ +. .+..+=...+.+.+.+++.+..
T Consensus 4 Y~lgIDiGTss~Ka~l~d~~g~~~---~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~i~~~~~~~~ 67 (510)
T 2p3r_A 4 YIVALDQGTTSSRAVVMDHDANII---SVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKAD 67 (510)
T ss_dssp EEEEEEECSSEEEEEEECTTCCEE---EEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEECCCCEEEEEECCCCCEE---EEEEECCCEECCCCCCEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 999998224142222882999899---9999537703589982898999999999999999999759
No 69
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=39.52 E-value=20 Score=16.08 Aligned_cols=19 Identities=16% Similarity=0.143 Sum_probs=13.1
Q ss_pred EEEECCCCCEEEEEEEEEE
Q ss_conf 9999788872058999971
Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVA 25 (169)
Q Consensus 7 ILGIDPGl~~tG~avie~~ 25 (169)
|+|||.|++++..+..+..
T Consensus 2 iIgID~Gt~~~kva~~~~~ 20 (320)
T 2zgy_A 2 LVFIDDGSTNIKLQWQESD 20 (320)
T ss_dssp EEEEEECSSEEEEEEECSS
T ss_pred EEEEECCCCCEEEEEECCC
T ss_conf 9999869116999999199
No 70
>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp}
Probab=39.36 E-value=20 Score=16.06 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=20.0
Q ss_pred EEEEECCCCCEEEEEEEEEECCE
Q ss_conf 69999788872058999971996
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDN 28 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~ 28 (169)
|||-|.||+++|=|++++.+..+
T Consensus 3 kILvIN~GSSS~K~alf~~~~~~ 25 (384)
T 3khy_A 3 EILVLNCGSSSVKFALINPHTSQ 25 (384)
T ss_dssp EEEEEEECSSCEEEEEEETTTTE
T ss_pred EEEEEECCHHHHHHEEEECCCCC
T ss_conf 49999376663714779689987
No 71
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis KOD1} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A
Probab=38.92 E-value=7 Score=18.88 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=26.7
Q ss_pred CEEEEECCCCC-------EEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 06999978887-------205899997199689998336873889998889999999899986227
Q gi|254780554|r 5 IRIIGIDPGLR-------RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63 (169)
Q Consensus 5 MrILGIDPGl~-------~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~ 63 (169)
|||+|+|=.=+ ..+-++++... ...+...| ++=+++.+...| .+|++.+.+....|
T Consensus 1 m~I~GvDEaGRG~l~GPvvvaav~~~~~~-~~~l~~~g-v~DSK~Ls~~kR-~~l~~~i~~~~~~~ 63 (213)
T 1io2_A 1 MKIAGIDEAGRGPVIGPMVIAAVVVDENS-LPKLEELK-VRDSKKLTPKRR-EKLFNEILGVLDDY 63 (213)
T ss_dssp CEEEEEEEECSSCSBSCEEEEEEEEEGGG-HHHHHHTT-GGGCTTCCHHHH-HHHHHHHHTTCSEE
T ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEHHH-CCHHHHCC-CCCCHHCCHHHH-HHHHHHHHHHHHHH
T ss_conf 92993547787773110068999980142-30333037-752010999899-99999999776652
No 72
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=33.57 E-value=18 Score=16.34 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=12.0
Q ss_pred EEEEECCCCCEEEEEE
Q ss_conf 6999978887205899
Q gi|254780554|r 6 RIIGIDPGLRRTGWGI 21 (169)
Q Consensus 6 rILGIDPGl~~tG~av 21 (169)
|++|||-|++++-.++
T Consensus 4 ~~iGID~GTtns~va~ 19 (344)
T 1jce_A 4 KDIGIDLGTANTLVFL 19 (344)
T ss_dssp CEEEEEECSSEEEEEE
T ss_pred CCEEEECCHHHEEEEE
T ss_conf 8689988845689999
No 73
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=32.88 E-value=25 Score=15.42 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=27.1
Q ss_pred EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC---CC-----CHHHHHHHHHHHHHHHHHCC
Q ss_conf 99997888720589999719968999833687388---99-----98889999999899986227
Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV---RQ-----SLAFRLCQLYEGLTDVIKNW 63 (169)
Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~---~~-----~~~~Rl~~I~~~l~~ii~~~ 63 (169)
+||||-|++++=.+++|.+++. +.......+. +. +..+=...+.+.+++++++.
T Consensus 4 ~lgID~GTts~Ka~l~d~~g~i---~~~~~~~~~~~~~~~g~~E~d~~~~w~~~~~~i~~~l~~~ 65 (504)
T 2d4w_A 4 VLAIDQGTTSSRAIVFDHSGEI---YSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRG 65 (504)
T ss_dssp EEEEEECSSEEEEEEECTTSCE---EEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCEEEEEECCCCCE---EEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHC
T ss_conf 9999832313100178598989---9999962771459998089999999999999999999975
No 74
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein structure initiative; 1.85A {Shewanella oneidensis mr-1} SCOP: b.40.14.1
Probab=32.49 E-value=26 Score=15.38 Aligned_cols=57 Identities=14% Similarity=0.266 Sum_probs=37.1
Q ss_pred CCCEEEEECCCCCEEEEEEEEEE----------------CCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 88069999788872058999971----------------9968999833687388999888999999989998622
Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVA----------------GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62 (169)
Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~----------------~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~ 62 (169)
-++||+.||.... .|.+|.. -+.+-+++.|.....-.....++...+++.+.+..+.
T Consensus 26 IP~kVveI~~~~~---~A~Vd~~Gv~reV~l~Lv~e~v~vGDyVLVHaGfAIekIdeeeA~etl~~l~el~~~~e~ 98 (103)
T 3d3r_A 26 IPSQVVAVDNERQ---SVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHIGFVMNKIDRNDALQSLELYQEIVSKLEN 98 (103)
T ss_dssp CCEEEEEEETTTT---EEEEEETTEEEEEECTTBSSCCCTTCEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHC-
T ss_pred ECEEEEEECCCCC---EEEEECCCEEEEEEEECCCCCCCCCCEEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 1519999929888---899967994999981015678889989999516676438999999999999999997530
No 75
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=32.01 E-value=26 Score=15.33 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHH
Q ss_conf 899988899999998999862279627788503320241247889999999999998601617752606
Q gi|254780554|r 41 VRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109 (169)
Q Consensus 41 ~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~ 109 (169)
..+++.+.+..+-..+.+++.+.+||.|.+=.- ..++ ++ ..+++...+||+..+-..
T Consensus 91 ~~~~~~~~~~~~i~~~~~~~~~~kPD~vlV~GD-----r~~~--la-----~alaa~~~~Ipi~HiegG 147 (403)
T 3ot5_A 91 KGQTLAEITSRVMNGINEVIAAENPDIVLVHGD-----TTTS--FA-----AGLATFYQQKMLGHVEAG 147 (403)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHCCSEEEEETT-----CHHH--HH-----HHHHHHHTTCEEEEESCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC-----CCHH--HH-----HHHHHHHHCCCEEEEECC
T ss_conf 999999999999999999999739999999688-----8048--99-----999999819978999646
No 76
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=28.68 E-value=19 Score=16.20 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=8.3
Q ss_pred CCEEEEECCCCCEEEE
Q ss_conf 8069999788872058
Q gi|254780554|r 4 SIRIIGIDPGLRRTGW 19 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~ 19 (169)
++.|+|||.|+..+-.
T Consensus 3 ~~~iigiDiG~~~~K~ 18 (355)
T 3js6_A 3 NVYVMALDFGNGFVKG 18 (355)
T ss_dssp CEEEEEEEECSSEEEE
T ss_pred CCEEEEEECCCEEEEE
T ss_conf 9839999937001999
No 77
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=28.02 E-value=31 Score=14.91 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=31.9
Q ss_pred CCEEEEECCCCCEEEEEEEEEEC---------------------CEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 80699997888720589999719---------------------968999833687388999888999999989998
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAG---------------------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~---------------------~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~i 59 (169)
+|||+-||.. +|.+|..| +.+-+++.|..-..-.....++...+++.+.++
T Consensus 6 P~kVvei~~~-----~A~vd~~Gv~r~v~l~lv~~~~~~~~~~vGDyVLVH~G~Ai~~ide~eA~etl~~l~el~~~ 77 (90)
T 2ot2_A 6 PGQIRTIDGN-----QAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGFAMSVINEAEARDTLDALQNMFDV 77 (90)
T ss_dssp EEEEEEECSS-----EEEEECSSSEEEEECTTTCSBCTTSCBCTTCEEEEETTEEEEEECHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCC-----EEEEEECCCEEEEEEEECCCCCCCCCCCCCCEEEEECCHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 4499998599-----79999389179999641226667764677889999614645018999999999999999877
No 78
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.82 E-value=31 Score=14.89 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=33.0
Q ss_pred EEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHHHHHH
Q ss_conf 7526067776531688889999999999962889999955--67899999997641
Q gi|254780554|r 104 SEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD--AADALAIAVCHAYH 157 (169)
Q Consensus 104 ~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D--~aDAlAiAl~h~~~ 157 (169)
||...++|||-++-+=..+++++.. +|+++....+.++| +--||+|++|-.+-
T Consensus 158 yew~~~tik~qL~KdFqG~EaDLd~-LQrlID~g~I~~dd~~twQAmGIafGDILa 212 (269)
T 3hlz_A 158 YEWVVSTVKQELKKDFQGVEEDLEK-IQQVIDSGKISPKKKDEWLAIGITVCAILT 212 (269)
T ss_dssp HHHHHHHHHHHHCCCCCSSGGGHHH-HHHHHHTTCSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8999999999974224572877999-999984378782148899976899999988
No 79
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=26.97 E-value=32 Score=14.80 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHH
Q ss_conf 899988899999998999862279627788503320241247889999999999998601617752606
Q gi|254780554|r 41 VRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109 (169)
Q Consensus 41 ~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~ 109 (169)
...++.+.+..+...+.+++.+++||.|.+-.- ..++ ++ +.+++...+||+..+.-.
T Consensus 68 ~~~~~~~~~~~~~~~~~~il~~~kpD~Vlv~GD-----r~~~--la-----~a~aa~~~~ipi~HiegG 124 (376)
T 1v4v_A 68 ERQALPDLAARILPQAARALKEMGADYVLVHGD-----TLTT--FA-----VAWAAFLEGIPVGHVEAG 124 (376)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTTCSEEEEESS-----CHHH--HH-----HHHHHHHTTCCEEEETCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC-----CCHH--HH-----HHHHHHHCCCCEEEEECC
T ss_conf 888899999999999999974059998999689-----7079--99-----999998629747986617
No 80
>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid ribonucleotidohydrolase; 2.00A {Pyrococcus horikoshii OT3} SCOP: c.55.3.1
Probab=25.87 E-value=22 Score=15.74 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=31.0
Q ss_pred CEEEEECCCCC-------EEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 06999978887-------205899997199689998336873889998889999999899986227962778
Q gi|254780554|r 5 IRIIGIDPGLR-------RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69 (169)
Q Consensus 5 MrILGIDPGl~-------~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~va 69 (169)
|||+|+|=.=+ ..+-++++.+.- ..+...| ++=+++.+..+| .+|++.+.+....|....+.
T Consensus 1 ~~I~GvDEaGRG~~~GPlvvaav~~~~~~~-~~l~~~g-v~DSK~Ls~~kR-~~l~~~i~~~~~~~~v~~~~ 69 (220)
T 1uax_A 1 MKVAGVDEAGRGPVIGPLVIGVAVIDEKNI-ERLRDIG-VKDSKQLTPGQR-EKLFSKLIDILDDYYVLLVT 69 (220)
T ss_dssp CEEEEEEEECSSCSBSCEEEEEEEEEGGGH-HHHHHHT-GGGSTTSCHHHH-HHHHHHHHHHSSEEEEEEEC
T ss_pred CEEEEECCCCCCCCCCCCEEEEEEECHHHH-HHHHHCC-CCCCCCCCHHHH-HHHHHHHCCCCCEEEEEECC
T ss_conf 929805387866620331789999875651-3565359-986452999999-99976530234227999578
No 81
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=24.71 E-value=35 Score=14.54 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=33.3
Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEE--EEEEEEECCCC---CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 69999788872058999971996899--98336873889---9988899999998999862279
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCF--VSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNWR 64 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~l--i~~g~I~t~~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169)
=+||||-|++++=.+++|.+++.... ..+..+.+.+. .+..+=...+.+.+.++++++.
T Consensus 6 Y~lgIDiGTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~l~~~~~~~~ 69 (554)
T 3l0q_A 6 YFIGVDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQAD 69 (554)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 7999981454525458849998999999856617689994899999999999999999999749
No 82
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=22.72 E-value=17 Score=16.47 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=39.6
Q ss_pred CCEEEEECCCCCEEEEEEEEEEC--CEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCC
Q ss_conf 80699997888720589999719--968999833687388999888999999989998622796277885033202
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAG--DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK 77 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~--~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~ 77 (169)
..-|+.+||++..+|-+++.... .....-..-.++..+......-+..-....-.+++...-|.+.||.+-.+.
T Consensus 85 kvavlavDpss~~tggallgD~~Rm~~~~~~~~~~ir~~~~~g~~~g~~~~~~~~i~~~~~~g~d~ilvEtVG~gq 160 (337)
T 2qm8_A 85 KVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQ 160 (337)
T ss_dssp CEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred CEEEEECCCCCCCCHHCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 3112314876211220044126889985246622542530136531046778999999874498759997135554
No 83
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=20.94 E-value=30 Score=15.00 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHCCC
Q ss_conf 888999999999996288
Q gi|254780554|r 119 GHGDKKQIHMMLKMLMPE 136 (169)
Q Consensus 119 G~A~KeqV~~mV~~ll~~ 136 (169)
.+|+|++|...|+.|+.+
T Consensus 19 ~KA~K~~i~~aV~~LL~L 36 (59)
T 1d2d_A 19 EKAPKAKVTEAVECLLSL 36 (59)
T ss_dssp TCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 499999999999999999
No 84
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleotide-binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=20.63 E-value=42 Score=14.04 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=31.9
Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9988069999788872058999971996899983368738-----89---998889999999899986227
Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNW 63 (169)
Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~ 63 (169)
|.+.=-|||||-|++++=.+++|.+++.+ .......+ .. .+..+=...+.+.+.+++.+.
T Consensus 1 M~~~~y~lgIDiGTts~Ka~l~d~~g~~i---~~~~~~~~~~~~~~g~~Eqd~~~~~~~~~~~~~~~~~~~ 68 (506)
T 3h3n_X 1 MAEKNYVMAIDQGTTSSRAIIFDRNGKKI---GSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIES 68 (506)
T ss_dssp -CCCCEEEEEEECSSEEEEEEEETTSCEE---EEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHC
T ss_conf 99885899998322031000681899999---999985671658998188899999999999999999985
No 85
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=20.18 E-value=43 Score=13.98 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=24.5
Q ss_pred EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCH
Q ss_conf 999978887205899997199689998336873889998
Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL 45 (169)
Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~ 45 (169)
+|-||-|-+++=||+.+ +++ ++....+.+......
T Consensus 2 ~L~IDiGNT~iK~~l~~--~~~--~~~~~~~~t~~~~~~ 36 (268)
T 2h3g_X 2 IFVLDVGNTNAVLGVFE--EGE--LRQHWRMETDRHKTE 36 (268)
T ss_dssp EEEEEECSSEEEEEEEE--TTE--EEEEEEEECCTTCCH
T ss_pred EEEEEECCCCCEEEEEE--CCE--EEEEEEEECCCCCCH
T ss_conf 89999887710899998--999--999999845876677
Done!