HHSEARCH alignment of GI: 254780554 and SCOP domain: d1hjra_

Alignment
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=348.73  Aligned_cols=156  Identities=40%  Similarity=0.677  Sum_probs=150.2

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHH
Q ss_conf             69999788872058999971996899983368738899988899999998999862279627788503320241247889
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKL   85 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~l   85 (169)
                      .|||||||+++|||||+|.++++++++++|+|+|+++ ++++||..|++++.++|++|+||.|++|++||++|++|++++
T Consensus         2 iILGIDPGl~~~G~avid~~~~~~~~v~~g~i~t~~~-~~~~Rl~~i~~~l~~li~~~~Pd~vaiE~~f~~~n~~sa~~l   80 (158)
T d1hjra_           2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKL   80 (158)
T ss_dssp             EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCS-CHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHH
T ss_pred             EEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCC-CHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHCCCHHHHHHH
T ss_conf             8999836778658999996498789999527967998-769999999999999985349987898740002488999999


Q ss_pred             HHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf             99999999999860161775260677765316888899999999999628899999556789999999764168756
Q gi|254780554|r   86 GQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY  162 (169)
Q Consensus        86 g~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D~aDAlAiAl~h~~~~~~~~  162 (169)
                      ||+||++++++.++++|++||+|++|||++||+|+|+|+||+.||+++|+++.++.+|++||+|+|+||+|..+|+.
T Consensus        81 ~~arG~i~l~a~~~~ipi~e~~P~~vKk~vtG~G~A~K~qV~~mv~~~l~l~~~~~~D~aDAlAiAl~h~~~~~~~~  157 (158)
T d1hjra_          81 GQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM  157 (158)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEEHHHHHHHHTSSSSCCHHHHHHHHHHHTTCCCCCSSCTHHHHHHHHHHHHTTSSSC
T ss_pred             HHHHHHHHHHHHHCCCCEEECCHHHHHEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999980865012441422201447887589999999999829999999987999999999998745656


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: RuvC resolvase
domain: RuvC resolvase
species: Escherichia coli [TaxId: 562]