HHSEARCH alignment of GI: 254780554 and SCOP domain: d1kcfa2

Alignment
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=98.05  E-value=0.00012  Score=46.81  Aligned_cols=149  Identities=14%  Similarity=0.113  Sum_probs=81.7

Q ss_pred             CEEEEECCCCCEEEEEEEEEECC-EEEEEEEEEEECCCC----------CCHHHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf             06999978887205899997199-689998336873889----------9988899999998999862279627788503
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVR----------QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQV   73 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~-~~~li~~g~I~t~~~----------~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~   73 (169)
                      -|||+||.|..+.+|++++..++ .+.+.+++.+.....          .....--...+.-+..++..++||.+.||.+
T Consensus         2 ~kIlSIDvGIkNlAyc~l~~~~~~~~~I~~W~~i~L~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~d~vlIE~Q   81 (218)
T d1kcfa2           2 SRVLGIDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILMERQ   81 (218)
T ss_dssp             SSEEEEEECSTTEEEEEEEECTTSCEEEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEEEEEC
T ss_pred             CEEEEEEECCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             76999982754027999866799984787703674036556765323227989999999999865420157856898521


Q ss_pred             HHCCCHHHH----HHHHHHHHHHHHHHHHC-------C--C-CEEEECHHHHHHHH------CCCCCCCHHHHHHHHHHH
Q ss_conf             320241247----88999999999999860-------1--6-17752606777653------168888999999999996
Q gi|254780554|r   74 FVNKDAVAT----LKLGQARAIAILSPALA-------R--I-PVSEYAPNTIKKAV------IGVGHGDKKQIHMMLKML  133 (169)
Q Consensus        74 F~~~n~~t~----~~lg~arGvi~l~~~~~-------~--i-~v~ey~P~~vKkav------tG~G~A~KeqV~~mV~~l  133 (169)
                      -+..+..+.    +.+.-..+.+.......       .  . .+....|..+-+.-      .++..-.|.- ...++.+
T Consensus        82 ~~r~~~~~i~~~~l~~~~le~ml~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~Kk~~-i~~~~~~  160 (218)
T d1kcfa2          82 RYRSGIATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSR-VQMVKEL  160 (218)
T ss_dssp             CCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEEEECCHHHHHHHHHHHHC-------CCCH-HHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHH-HHHHHHH
T ss_conf             344676305688899999999999999875330234446400488737101244401235656542137999-9999999


Q ss_pred             CC-------------------CCCCCCCCHHHHHHHHHHH
Q ss_conf             28-------------------8999995567899999997
Q gi|254780554|r  134 MP-------------------ESFFKGKDAADALAIAVCH  154 (169)
Q Consensus       134 l~-------------------~~~~~~~D~aDAlAiAl~h  154 (169)
                      +.                   ....+-||.||++=-|+..
T Consensus       161 L~~~~~~~~~~~~~~~~~~~~~~~kKkDDLADs~Lq~l~~  200 (218)
T d1kcfa2         161 IDGQKILFENEEALYKWNNGSRVEFKKDDMADSALIASGW  200 (218)
T ss_dssp             HHTTSEEESSHHHHHHHHHCCSTTTHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             8627023576167899998622678743467699999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Mitochondrial resolvase ydc2 catalytic domain
domain: Mitochondrial resolvase ydc2 catalytic domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]