HHSEARCH alignment of GI: 254780554 and SCOP domain: d1nu0a_

Alignment
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}
Probab=97.95  E-value=2.9e-05  Score=50.58  Aligned_cols=103  Identities=15%  Similarity=0.133  Sum_probs=63.5

Q ss_pred             CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHH
Q ss_conf             80699997888720589999719968999833687388999888999999989998622796277885033202412478
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATL   83 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~   83 (169)
                      +.||||||+|+.++|+|+-|..+.-...  .+++..+....       ..+.|.+++++|+|+.++|=-|+.-.+..+.+
T Consensus         2 ~griLgiD~G~kriGvAvsd~~~~~a~p--l~~i~~~~~~~-------~~~~l~~i~~e~~~~~iVvG~P~~~~g~~~~~   72 (138)
T d1nu0a_           2 SGTLMAFDFGTKSIGVAVGQRITGTARP--LPAIKAQDGTP-------DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPL   72 (138)
T ss_dssp             CCEEEEEECCSSEEEEEEEETTTTEEEE--EEEEEEETTEE-------CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHH
T ss_pred             CCCEEEEEECCCEEEEEEECCCCCCCCC--CEEEECCCCHH-------HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH
T ss_conf             9748999938998999993798774254--25555036405-------69999987540476389961432235555799


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEE----CHHHHHHHHC
Q ss_conf             89999999999998601617752----6067776531
Q gi|254780554|r   84 KLGQARAIAILSPALARIPVSEY----APNTIKKAVI  116 (169)
Q Consensus        84 ~lg~arGvi~l~~~~~~i~v~ey----~P~~vKkavt  116 (169)
                       .-.++--+-....+.++||+.+    +..+.+....
T Consensus        73 -~~~v~~f~~~L~~~~~i~V~~~DEr~TS~eA~~~l~  108 (138)
T d1nu0a_          73 -TARARKFANRIHGRFGVEVKLHDERLSTVEARSGLF  108 (138)
T ss_dssp             -HHHHHHHHHHHHHHHCCCEEEEEEECCCCCC-----
T ss_pred             -HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
T ss_conf             -999999999985454987699715324999999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YqgF (RuvX)
species: Escherichia coli [TaxId: 562]