Query         gi|254780554|ref|YP_003064967.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 169
No_of_seqs    124 out of 1248
Neff          6.5 
Searched_HMMs 13730
Date          Wed Jun  1 09:27:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780554.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1hjra_ c.55.3.6 (A:) RuvC res 100.0       0       0  348.7  20.4  156    6-162     2-157 (158)
  2 d1vhxa_ c.55.3.8 (A:) Hypothet  98.4 9.1E-07 6.6E-11   59.8   8.6  109    4-120     1-113 (140)
  3 d3bzka5 c.55.3.13 (A:325-473)   98.3 7.5E-07 5.4E-11   60.4   6.0   64    3-72      3-67  (149)
  4 d1kcfa2 c.55.3.7 (A:39-256) Mi  98.0 0.00012 8.6E-09   46.8  13.5  149    5-154     2-200 (218)
  5 d1nu0a_ c.55.3.8 (A:) Hypothet  98.0 2.9E-05 2.1E-09   50.6   9.0  103    4-116     2-108 (138)
  6 d1iv0a_ c.55.3.8 (A:) Hypothet  97.6 3.3E-05 2.4E-09   50.3   5.1   88    5-106     1-91  (98)
  7 d2aa4a1 c.55.1.10 (A:1-119) N-  95.8   0.011 7.7E-07   34.8   5.8   56    5-67      1-56  (119)
  8 d1okja1 c.55.1.9 (A:1-106) Hyp  95.5   0.038 2.8E-06   31.4   7.9   94    6-111     1-96  (106)
  9 d2a6aa1 c.55.1.9 (A:1-103) Hyp  95.5   0.035 2.6E-06   31.5   7.6   94    5-111     1-96  (103)
 10 d2gupa1 c.55.1.10 (A:1-114) Hy  95.4    0.02 1.4E-06   33.1   6.0   59    5-72      1-59  (114)
 11 d1huxa_ c.55.1.5 (A:) Hydroxyg  94.9   0.023 1.7E-06   32.7   5.2   51    4-59      1-51  (259)
 12 d1t6ca1 c.55.1.8 (A:7-132) Exo  94.4    0.16 1.2E-05   27.4  10.6   97    3-109     1-111 (126)
 13 d2d0oa2 c.55.1.6 (A:1-92,A:255  91.2    0.48 3.5E-05   24.6   7.5   58    6-63      3-61  (241)
 14 d1zc6a1 c.55.1.5 (A:8-121) Pro  91.0    0.43 3.1E-05   24.9   6.9   59    4-64      2-61  (114)
 15 d2ewsa1 c.55.1.14 (A:1-267) Ty  88.6    0.51 3.7E-05   24.4   5.7   54    5-75      1-54  (267)
 16 d2ap1a2 c.55.1.10 (A:1-117) Pu  87.0    0.98 7.1E-05   22.7   7.5   61    7-71      2-63  (117)
 17 d1woqa1 c.55.1.10 (A:11-139) I  86.7       1 7.4E-05   22.6   8.3   59    6-65      3-61  (129)
 18 d1saza1 c.55.1.2 (A:1-172) but  86.4    0.33 2.4E-05   25.5   3.7   31    4-38      1-31  (172)
 19 d2hoea3 c.55.1.10 (A:72-199) N  86.4       1 7.6E-05   22.5   6.5   56    5-63      4-59  (128)
 20 d1z05a3 c.55.1.10 (A:81-208) T  85.1     1.2 8.9E-05   22.1   6.6   57    6-66      5-61  (128)
 21 d1xc3a1 c.55.1.10 (A:1-118) Pu  82.2     1.6 0.00012   21.3   6.7   55    7-71      2-56  (118)
 22 d1dkgd1 c.55.1.1 (D:3-185) Hea  80.8    0.46 3.3E-05   24.7   2.5   18    6-23      1-18  (183)
 23 d1zbsa2 c.55.1.5 (A:1-107) Hyp  80.7     1.8 0.00013   21.0   5.6   23    7-30      2-24  (107)
 24 d1u6za2 c.55.1.8 (A:12-135) Ex  79.5       2 0.00014   20.8   6.6   93    7-109     2-108 (124)
 25 d1g99a1 c.55.1.2 (A:1-197) Ace  79.0     1.7 0.00012   21.2   4.9   31    5-37      1-31  (197)
 26 d2ch5a2 c.55.1.5 (A:1-117) N-a  78.9       1 7.4E-05   22.5   3.8   24    6-29      4-27  (117)
 27 d1nbwa2 c.55.1.6 (A:2-91,A:257  75.3     2.6 0.00019   20.0   5.1   58    6-63      2-59  (239)
 28 d2p67a1 c.37.1.10 (A:1-327) LA  70.7     2.1 0.00015   20.7   3.6   73    4-76     84-158 (327)
 29 d1bupa1 c.55.1.1 (A:4-188) Hea  63.1     2.6 0.00019   20.1   2.9   25    6-32      2-26  (185)
 30 d2p3ra1 c.55.1.4 (A:2-253) Gly  55.0     6.5 0.00048   17.6   6.2   56    6-64      4-67  (252)
 31 d1z6ra2 c.55.1.10 (A:82-210) M  53.0     7.1 0.00051   17.4   8.2   59    3-65      2-60  (129)
 32 d1sz2a1 c.55.1.7 (A:3-321) Glu  52.3     7.2 0.00053   17.3   5.4   56    7-71      3-60  (319)
 33 d1zxoa1 c.55.1.5 (A:3-106) Hyp  46.0    0.92 6.7E-05   22.8  -1.7   20   10-30      3-22  (104)
 34 d1jcea1 c.55.1.1 (A:4-140) Pro  42.6     6.1 0.00045   17.7   2.0   16    6-21      1-16  (137)
 35 d2fsja2 c.55.1.12 (A:1-164) Hy  41.0     6.9  0.0005   17.4   2.1   16    5-20      1-16  (164)
 36 d1p5dx4 d.129.2.1 (X:368-463)   34.8      12 0.00086   16.0   2.5   45   17-67     48-92  (96)
 37 d2ot2a1 b.40.14.1 (A:1-90) Hyd  31.6      15  0.0011   15.3   4.6   52    4-60      6-78  (90)
 38 d1r59o1 c.55.1.4 (O:5-256) Gly  30.8     8.6 0.00063   16.8   1.3   21    7-27      3-23  (252)
 39 d1io2a_ c.55.3.1 (A:) Class II  29.2     7.2 0.00053   17.3   0.6   57    5-64      1-64  (213)
 40 d1v4va_ c.87.1.3 (A:) UDP-N-ac  27.8      18  0.0013   14.9   7.4   58   40-109    64-121 (373)
 41 d1h9aa1 c.2.1.3 (A:1-181,A:413  27.7      18  0.0013   14.9   3.7   14  137-150   147-160 (195)
 42 d1q18a1 c.55.1.7 (A:2-111) Glu  24.8      20  0.0015   14.6   6.4   52    6-66      3-54  (110)
 43 d1a9xa4 c.30.1.1 (A:556-676) C  23.8      21  0.0015   14.4   3.2   50   53-114    68-117 (121)
 44 d1o6ca_ c.87.1.3 (A:) UDP-N-ac  23.8      21  0.0015   14.4   7.0   77   41-133    65-143 (377)
 45 d2qm8a1 c.37.1.10 (A:5-327) Me  23.6      12 0.00084   16.0   0.8   75    3-77     80-156 (323)
 46 d2a6aa2 c.55.1.9 (A:104-193) H  21.1      19  0.0014   14.8   1.5   49   54-111    38-88  (90)
 47 d1r6ta1 a.16.1.3 (A:7-60) N-te  21.0      16  0.0012   15.1   1.2   19  119-137    23-41  (54)
 48 d1ulua_ c.2.1.2 (A:) Enoyl-ACP  20.4      25  0.0018   14.0   2.8   54   96-149   178-231 (256)
 49 d1iq0a2 c.26.1.1 (A:97-466) Ar  20.2      17  0.0013   15.0   1.2   11  144-154   337-347 (370)
 50 d1vqos1 d.12.1.1 (S:1-81) Ribo  20.2      25  0.0018   14.0   2.7   19  119-137    30-48  (81)

No 1  
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=348.73  Aligned_cols=156  Identities=40%  Similarity=0.677  Sum_probs=150.2

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHH
Q ss_conf             69999788872058999971996899983368738899988899999998999862279627788503320241247889
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKL   85 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~l   85 (169)
                      .|||||||+++|||||+|.++++++++++|+|+|+++ ++++||..|++++.++|++|+||.|++|++||++|++|++++
T Consensus         2 iILGIDPGl~~~G~avid~~~~~~~~v~~g~i~t~~~-~~~~Rl~~i~~~l~~li~~~~Pd~vaiE~~f~~~n~~sa~~l   80 (158)
T d1hjra_           2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKL   80 (158)
T ss_dssp             EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCS-CHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHH
T ss_pred             EEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCC-CHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHCCCHHHHHHH
T ss_conf             8999836778658999996498789999527967998-769999999999999985349987898740002488999999


Q ss_pred             HHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf             99999999999860161775260677765316888899999999999628899999556789999999764168756
Q gi|254780554|r   86 GQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY  162 (169)
Q Consensus        86 g~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D~aDAlAiAl~h~~~~~~~~  162 (169)
                      ||+||++++++.++++|++||+|++|||++||+|+|+|+||+.||+++|+++.++.+|++||+|+|+||+|..+|+.
T Consensus        81 ~~arG~i~l~a~~~~ipi~e~~P~~vKk~vtG~G~A~K~qV~~mv~~~l~l~~~~~~D~aDAlAiAl~h~~~~~~~~  157 (158)
T d1hjra_          81 GQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM  157 (158)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEEHHHHHHHHTSSSSCCHHHHHHHHHHHTTCCCCCSSCTHHHHHHHHHHHHTTSSSC
T ss_pred             HHHHHHHHHHHHHCCCCEEECCHHHHHEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999980865012441422201447887589999999999829999999987999999999998745656


No 2  
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}
Probab=98.38  E-value=9.1e-07  Score=59.85  Aligned_cols=109  Identities=18%  Similarity=0.192  Sum_probs=67.3

Q ss_pred             CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHH
Q ss_conf             80699997888720589999719968999833687388999888999999989998622796277885033202412478
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATL   83 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~   83 (169)
                      +|||||||+|..++|+|+-|..+.-...  .++|..+....     ......|.+++++|+|+.++|=-|+--.+..+. 
T Consensus         1 ~mriLgiD~G~kriGvAisd~~~~~a~p--l~~i~~~~~~~-----~~~~~~l~~ii~e~~i~~iViGlP~~~dg~~~~-   72 (140)
T d1vhxa_           1 SLRILGLDLGTKTLGVALSDEMGWTAQG--IETIKINEAEG-----DYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGP-   72 (140)
T ss_dssp             CEEEEEEEECSSEEEEEEECTTSSSEEE--EEEEECBGGGT-----BCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCH-
T ss_pred             CCEEEEEEECCCEEEEEEECCCCCCCCC--EEEEEECCCCC-----CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHH-
T ss_conf             9519999827998999994599882255--16686125664-----168999999998516565998355224786136-


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEE----CHHHHHHHHCCCCC
Q ss_conf             89999999999998601617752----60677765316888
Q gi|254780554|r   84 KLGQARAIAILSPALARIPVSEY----APNTIKKAVIGVGH  120 (169)
Q Consensus        84 ~lg~arGvi~l~~~~~~i~v~ey----~P~~vKkavtG~G~  120 (169)
                      ...+++-.+-......++||+.+    +..+.++..-..|.
T Consensus        73 ~~~~~~~f~~~l~~~~~i~V~~~DEr~TS~~A~~~l~~~~~  113 (140)
T d1vhxa_          73 RGEASQTFAKVLETTYNVPVVLWDERLTTMAAEKMLIAADV  113 (140)
T ss_dssp             HHHHHHHHHHHHHHHHCSCEEEECCSSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCC
T ss_conf             77888999998346778557984144379999999997699


No 3  
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=98.27  E-value=7.5e-07  Score=60.38  Aligned_cols=64  Identities=20%  Similarity=0.295  Sum_probs=48.0

Q ss_pred             CCCEEEEECCCC-CEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf             880699997888-7205899997199689998336873889998889999999899986227962778850
Q gi|254780554|r    3 KSIRIIGIDPGL-RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ   72 (169)
Q Consensus         3 ~~MrILGIDPGl-~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~   72 (169)
                      +.-||||||||. +.|+||++|.+|.   ++++++|.+.......   ..-.+.|.+++++|+|+.|+|-.
T Consensus         3 ~~~~vlg~DPg~r~gck~AvlD~~G~---vld~~viyp~~~~~~~---~~a~~~l~~li~k~~p~vIaIGN   67 (149)
T d3bzka5           3 GPRATLGLDPGLRTGVKVAVVDATGK---LLDTATVYPHAPKNQW---DQTLAVLAALCAKHQVELIAIGN   67 (149)
T ss_dssp             CSCCEEEEECCSTTCEEEEEECTTSC---EEEEEEECCSTTTCCH---HHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCEEEEECCCCCCCCEEEEECCCCC---EEEEEEEECCCCHHHH---HHHHHHHHHHHHHCCCEEEEECC
T ss_conf             88558887888656618999979999---8999998437967799---99999999999983986999779


No 4  
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=98.05  E-value=0.00012  Score=46.81  Aligned_cols=149  Identities=14%  Similarity=0.113  Sum_probs=81.7

Q ss_pred             CEEEEECCCCCEEEEEEEEEECC-EEEEEEEEEEECCCC----------CCHHHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf             06999978887205899997199-689998336873889----------9988899999998999862279627788503
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVR----------QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQV   73 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~-~~~li~~g~I~t~~~----------~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~   73 (169)
                      -|||+||.|..+.+|++++..++ .+.+.+++.+.....          .....--...+.-+..++..++||.+.||.+
T Consensus         2 ~kIlSIDvGIkNlAyc~l~~~~~~~~~I~~W~~i~L~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~d~vlIE~Q   81 (218)
T d1kcfa2           2 SRVLGIDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILMERQ   81 (218)
T ss_dssp             SSEEEEEECSTTEEEEEEEECTTSCEEEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEEEEEC
T ss_pred             CEEEEEEECCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             76999982754027999866799984787703674036556765323227989999999999865420157856898521


Q ss_pred             HHCCCHHHH----HHHHHHHHHHHHHHHHC-------C--C-CEEEECHHHHHHHH------CCCCCCCHHHHHHHHHHH
Q ss_conf             320241247----88999999999999860-------1--6-17752606777653------168888999999999996
Q gi|254780554|r   74 FVNKDAVAT----LKLGQARAIAILSPALA-------R--I-PVSEYAPNTIKKAV------IGVGHGDKKQIHMMLKML  133 (169)
Q Consensus        74 F~~~n~~t~----~~lg~arGvi~l~~~~~-------~--i-~v~ey~P~~vKkav------tG~G~A~KeqV~~mV~~l  133 (169)
                      -+..+..+.    +.+.-..+.+.......       .  . .+....|..+-+.-      .++..-.|.- ...++.+
T Consensus        82 ~~r~~~~~i~~~~l~~~~le~ml~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~Kk~~-i~~~~~~  160 (218)
T d1kcfa2          82 RYRSGIATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSR-VQMVKEL  160 (218)
T ss_dssp             CCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEEEECCHHHHHHHHHHHHC-------CCCH-HHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHH-HHHHHHH
T ss_conf             344676305688899999999999999875330234446400488737101244401235656542137999-9999999


Q ss_pred             CC-------------------CCCCCCCCHHHHHHHHHHH
Q ss_conf             28-------------------8999995567899999997
Q gi|254780554|r  134 MP-------------------ESFFKGKDAADALAIAVCH  154 (169)
Q Consensus       134 l~-------------------~~~~~~~D~aDAlAiAl~h  154 (169)
                      +.                   ....+-||.||++=-|+..
T Consensus       161 L~~~~~~~~~~~~~~~~~~~~~~~kKkDDLADs~Lq~l~~  200 (218)
T d1kcfa2         161 IDGQKILFENEEALYKWNNGSRVEFKKDDMADSALIASGW  200 (218)
T ss_dssp             HHTTSEEESSHHHHHHHHHCCSTTTHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             8627023576167899998622678743467699999999


No 5  
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}
Probab=97.95  E-value=2.9e-05  Score=50.58  Aligned_cols=103  Identities=15%  Similarity=0.133  Sum_probs=63.5

Q ss_pred             CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHH
Q ss_conf             80699997888720589999719968999833687388999888999999989998622796277885033202412478
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATL   83 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~   83 (169)
                      +.||||||+|+.++|+|+-|..+.-...  .+++..+....       ..+.|.+++++|+|+.++|=-|+.-.+..+.+
T Consensus         2 ~griLgiD~G~kriGvAvsd~~~~~a~p--l~~i~~~~~~~-------~~~~l~~i~~e~~~~~iVvG~P~~~~g~~~~~   72 (138)
T d1nu0a_           2 SGTLMAFDFGTKSIGVAVGQRITGTARP--LPAIKAQDGTP-------DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPL   72 (138)
T ss_dssp             CCEEEEEECCSSEEEEEEEETTTTEEEE--EEEEEEETTEE-------CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHH
T ss_pred             CCCEEEEEECCCEEEEEEECCCCCCCCC--CEEEECCCCHH-------HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH
T ss_conf             9748999938998999993798774254--25555036405-------69999987540476389961432235555799


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEE----CHHHHHHHHC
Q ss_conf             89999999999998601617752----6067776531
Q gi|254780554|r   84 KLGQARAIAILSPALARIPVSEY----APNTIKKAVI  116 (169)
Q Consensus        84 ~lg~arGvi~l~~~~~~i~v~ey----~P~~vKkavt  116 (169)
                       .-.++--+-....+.++||+.+    +..+.+....
T Consensus        73 -~~~v~~f~~~L~~~~~i~V~~~DEr~TS~eA~~~l~  108 (138)
T d1nu0a_          73 -TARARKFANRIHGRFGVEVKLHDERLSTVEARSGLF  108 (138)
T ss_dssp             -HHHHHHHHHHHHHHHCCCEEEEEEECCCCCC-----
T ss_pred             -HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
T ss_conf             -999999999985454987699715324999999999


No 6  
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}
Probab=97.64  E-value=3.3e-05  Score=50.27  Aligned_cols=88  Identities=18%  Similarity=0.134  Sum_probs=54.9

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCC---CHHH
Q ss_conf             0699997888720589999719968999833687388999888999999989998622796277885033202---4124
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK---DAVA   81 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~---n~~t   81 (169)
                      |||||||.|..++|.|+=|..+.-...  .+++..+   +    .....+.|.+++++|+|+.++|=-|.--.   +.++
T Consensus         1 MriLglD~G~kriGiAisd~~~~~a~p--l~~i~~~---~----~~~~~~~l~~ii~e~~i~~iVvGlP~~~dG~~~~~~   71 (98)
T d1iv0a_           1 MRVGALDVGEARIGLAVGEEGVPLASG--RGYLVRK---T----LEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQA   71 (98)
T ss_dssp             CCEEEEEESSSEEEEEEECSCCSSCCC--EEEEECC---C----HHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCS
T ss_pred             CCEEEEECCCCEEEEEEECCCCCEECC--EEEEECC---C----CHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHH
T ss_conf             949999808998999991499984945--6889877---8----467899999999863301057166322379837889


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             7889999999999998601617752
Q gi|254780554|r   82 TLKLGQARAIAILSPALARIPVSEY  106 (169)
Q Consensus        82 ~~~lg~arGvi~l~~~~~~i~v~ey  106 (169)
                      . .   ++--+-. +...++||+-+
T Consensus        72 ~-~---v~~f~~~-L~~~~lpv~~~   91 (98)
T d1iv0a_          72 G-K---VLPLVEA-LRARGVEVELW   91 (98)
T ss_dssp             S-T---THHHHHH-HHHTTCEEEEE
T ss_pred             H-H---HHHHHHH-HHHCCCCEEEE
T ss_conf             9-9---9999999-96479999998


No 7  
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}
Probab=95.76  E-value=0.011  Score=34.79  Aligned_cols=56  Identities=13%  Similarity=0.243  Sum_probs=40.0

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             069999788872058999971996899983368738899988899999998999862279627
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE   67 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~   67 (169)
                      |++||||-|-+++=++++|..+.   ++....+.++...+..    .+.+.+.+++++++++.
T Consensus         1 M~~lgiDiGgT~i~~~l~d~~G~---i~~~~~~~~~~~~~~~----~~~~~i~~~i~~~~~~~   56 (119)
T d2aa4a1           1 MTTLAIDIGGTKLAAALIGADGQ---IRDRRELPTPASQTPE----ALRDALSALVSPLQAHA   56 (119)
T ss_dssp             CCEEEEEECSSEEEEEEECTTCC---EEEEEEEECCSSCCHH----HHHHHHHHHHTTTGGGC
T ss_pred             CEEEEEEECCCEEEEEEECCCCC---EEEEEEEECCCCCCHH----HHHHHHHHHHHHHHCCC
T ss_conf             90999996868799999949998---9876777036667688----99999999999753347


No 8  
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}
Probab=95.50  E-value=0.038  Score=31.35  Aligned_cols=94  Identities=12%  Similarity=0.212  Sum_probs=52.8

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCC--CHHHHH
Q ss_conf             699997888720589999719968999833687388999888999999989998622796277885033202--412478
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK--DAVATL   83 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~--n~~t~~   83 (169)
                      |||+||-+...+++|+++  +++.  +..  .... ...+.+.   |...+.+++++.+-+.--+..+++++  ..-|.+
T Consensus         1 kiLaIdTS~~~~sval~~--~~~i--~~~--~~~~-~~~h~~~---l~~~i~~~l~~~~~~~~di~~i~v~~GPGsfTgl   70 (106)
T d1okja1           1 RILAIDTATEACSVALWN--DGTV--NAH--FELC-PREHTQR---ILPMVQDILTTSGTSLTDINALAYGRGPGSFTGV   70 (106)
T ss_dssp             EEEEEECSSSEEEEEEEE--TTEE--EEE--EEEC-CSSTTTT---HHHHHHHHHHHTTCCGGGCCEEEEEEESSCHHHH
T ss_pred             CEEEEECCCCCEEEEEEE--CCEE--EEE--EEEC-CHHHHHH---HHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCC
T ss_conf             999999777132999999--9999--999--9975-5899999---9999999998608750025678885036765420


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             8999999999999860161775260677
Q gi|254780554|r   84 KLGQARAIAILSPALARIPVSEYAPNTI  111 (169)
Q Consensus        84 ~lg~arGvi~l~~~~~~i~v~ey~P~~v  111 (169)
                      .+|.+-+-.+  +.-.++|++.++..+.
T Consensus        71 Rig~s~akgl--a~~~~ip~~~v~sl~~   96 (106)
T d1okja1          71 RIGIGIAQGL--ALGAELPMIGVSTLMT   96 (106)
T ss_dssp             HHHHHHHHHH--HHHTTCCEEEEEHHHH
T ss_pred             HHHHHHHHHH--HHHCCCCEEEECHHHH
T ss_conf             5999999999--9982999998687999


No 9  
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=95.46  E-value=0.035  Score=31.55  Aligned_cols=94  Identities=17%  Similarity=0.202  Sum_probs=54.3

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHH--HH
Q ss_conf             0699997888720589999719968999833687388999888999999989998622796277885033202412--47
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAV--AT   82 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~--t~   82 (169)
                      |+||+||-+ +.+..++.+  +++..  +   .+......+.+.   |...+++++++.+.+.--++.+.++..|-  |.
T Consensus         1 M~iLaidTS-~~~sval~~--~~~~~--~---~~~~~~~~hs~~---l~~~i~~~l~~~~~~~~di~~i~v~~GPGsfTg   69 (103)
T d2a6aa1           1 MNVLALDTS-QRIRIGLRK--GEDLF--E---ISYTGEKKHAEI---LPVVVKKLLDELDLKVKDLDVVGVGIGPGGLTG   69 (103)
T ss_dssp             CEEEEEECS-SSEEEEEEE--TTEEE--E---EEEESCGGGGGH---HHHHHHHHHHHHTCCGGGCSEEEEECCSSCHHH
T ss_pred             CCEEEEECC-CCCEEEEEE--CCEEE--E---EECCCCHHHHHH---HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHH
T ss_conf             959999937-653799998--99999--9---961676689999---999999999983999899677762478876320


Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             88999999999999860161775260677
Q gi|254780554|r   83 LKLGQARAIAILSPALARIPVSEYAPNTI  111 (169)
Q Consensus        83 ~~lg~arGvi~l~~~~~~i~v~ey~P~~v  111 (169)
                      +.+|-+  .+.-.+.-.++|++.++..++
T Consensus        70 lRig~s--~akgla~~~~ip~~gis~l~~   96 (103)
T d2a6aa1          70 LRVGIA--TVVGLVSPYDIPVAPLNSFEM   96 (103)
T ss_dssp             HHHHHH--HHHHHHGGGTCCEEEECHHHH
T ss_pred             HHHHHH--HHHHHHHHCCCCEEEECHHHH
T ss_conf             899999--999999980999997487999


No 10 
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=95.35  E-value=0.02  Score=33.15  Aligned_cols=59  Identities=17%  Similarity=0.151  Sum_probs=43.4

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf             06999978887205899997199689998336873889998889999999899986227962778850
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ   72 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~   72 (169)
                      |+|++||-|-++.=+++++..+.   +++...+.|+.      .+..+.+.+.+.++++++..++|=-
T Consensus         1 M~i~~iDiGgT~i~~~l~d~~g~---i~~~~~~~t~~------~~~~~~~~i~~~~~~~~i~gIGi~~   59 (114)
T d2gupa1           1 MTIATIDIGGTGIKFASLTPDGK---ILDKTSISTPE------NLEDLLAWLDQRLSEQDYSGIAMSV   59 (114)
T ss_dssp             CCEEEEEEETTEEEEEEECTTCC---EEEEEEECCCS------SHHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred             CEEEEEEECCCCEEEEEECCCCC---EEEEEEECCCC------CHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             96999996810399999909997---99999971435------5999999999986114453599965


No 11 
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}
Probab=94.85  E-value=0.023  Score=32.71  Aligned_cols=51  Identities=20%  Similarity=0.180  Sum_probs=32.0

Q ss_pred             CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             80699997888720589999719968999833687388999888999999989998
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV   59 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~i   59 (169)
                      +|.+||||-|.+.|=++++|.+++   ++....+.|....  .+-+..|.+.+.++
T Consensus         1 ~M~~lGIDiGGT~~k~~vvd~~g~---il~~~~~~t~~~~--~~~~~~i~~~l~~~   51 (259)
T d1huxa_           1 SIYTLGIDVGSTASKCIILKDGKE---IVAKSLVAVGTGT--SGPARSISEVLENA   51 (259)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTTE---EEEEEEEECCSSC--CHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCEEEEEEECCCCC---EEEEEEECCCCCH--HHHHHHHHHHHHHC
T ss_conf             958999991721299999908990---9999995689997--99999999999972


No 12 
>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}
Probab=94.44  E-value=0.16  Score=27.45  Aligned_cols=97  Identities=14%  Similarity=0.196  Sum_probs=63.3

Q ss_pred             CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHCCCCCEEE-EE
Q ss_conf             8806999978887205899997199689998336873889998----------889999999899986227962778-85
Q gi|254780554|r    3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL----------AFRLCQLYEGLTDVIKNWRPEEAA-VE   71 (169)
Q Consensus         3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~----------~~Rl~~I~~~l~~ii~~~~Pd~va-iE   71 (169)
                      ..||+=.||-|++.+=+.|.|..++++..++.-...+.-....          -+|+......+.+++++|.++.+. +=
T Consensus         1 ~mmriavIDIGSNsirl~I~~~~~~~~~~l~~~~~~~~Lg~~~~~~g~ls~~~i~~~~~~l~~f~~~~~~~~v~~~~~va   80 (126)
T d1t6ca1           1 PIMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVA   80 (126)
T ss_dssp             CCEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCCEEEEEEECCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEH
T ss_conf             98789999974441999999864996226644337887246754458788899999999999999998743865167743


Q ss_pred             HHHHC--CCHHHHHHHHHHHHHHHHHH-HHCCCCEEEECHH
Q ss_conf             03320--24124788999999999999-8601617752606
Q gi|254780554|r   72 QVFVN--KDAVATLKLGQARAIAILSP-ALARIPVSEYAPN  109 (169)
Q Consensus        72 ~~F~~--~n~~t~~~lg~arGvi~l~~-~~~~i~v~ey~P~  109 (169)
                      .--+.  .|...          ++-.. .+.|+++.-.+..
T Consensus        81 TsA~R~A~N~~~----------~~~~i~~~tgi~i~Iisg~  111 (126)
T d1t6ca1          81 TEAIRRAKNAEE----------FLERVKREVGLVVEVITPE  111 (126)
T ss_dssp             CHHHHTSTTHHH----------HHHHHHHHTCCCEEECCHH
T ss_pred             HHHHHHCCCHHH----------HHHHHHHHHCCCEEEECHH
T ss_conf             199880859999----------9999999879996990789


No 13 
>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Probab=91.20  E-value=0.48  Score=24.55  Aligned_cols=58  Identities=19%  Similarity=0.142  Sum_probs=49.2

Q ss_pred             EEEEECCCCCEEEEEEEEEE-CCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             69999788872058999971-99689998336873889998889999999899986227
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW   63 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~-~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~   63 (169)
                      +|.|||-|-+.|-.|+-+.. +++.+++.+|...|.--+...+-+.-++..|...+++-
T Consensus         3 ~IaGiDIGNstTEvala~v~~~g~~~fl~S~i~~TTGiKGT~~Ni~Gv~~aL~~al~k~   61 (241)
T d2d0oa2           3 YIAGIDIGNSSTEVALATLDEAGALTITHSALAETTGIKGTLRNVFGIQEALALVARGA   61 (241)
T ss_dssp             EEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEECCSSTTSTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             59898507622241103515898479995143345565562788999999999999974


No 14 
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}
Probab=91.00  E-value=0.43  Score=24.87  Aligned_cols=59  Identities=24%  Similarity=0.290  Sum_probs=39.3

Q ss_pred             CC-EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             80-69999788872058999971996899983368738899988899999998999862279
Q gi|254780554|r    4 SI-RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR   64 (169)
Q Consensus         4 ~M-rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~   64 (169)
                      +| -+||||-|.++|=++++|.+++-+.....+  .+.......+-+..|.+.+++++++..
T Consensus         2 sm~y~lGID~GGT~tk~~l~d~~G~il~~~~~~--~~~~~~~~~~~~~~i~~~i~~~~~~ag   61 (114)
T d1zc6a1           2 SIRYLIGVDGGGTGTRIRLHASDGTPLAMAEGG--ASALSQGIAKSWQAVLSTLEAAFQQAG   61 (114)
T ss_dssp             CCCEEEEEEECSSCEEEEEEETTCCEEEEEEES--CCCGGGCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEECCCCEEEEEEECCCCCEEEEEECC--CCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             866899998470108999994999899999726--887334999999999999999999829


No 15 
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}
Probab=88.56  E-value=0.51  Score=24.40  Aligned_cols=54  Identities=9%  Similarity=0.043  Sum_probs=36.5

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf             06999978887205899997199689998336873889998889999999899986227962778850332
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFV   75 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~   75 (169)
                      || +|||-|-|.+=++++|.++.   +++.  ..++.           .+.+.+.+++..++.+.+..+..
T Consensus         1 Mk-iGIDiGGT~ik~~lvd~~g~---i~~~--~~~~t-----------~~~i~~~i~~~~~~~i~i~g~g~   54 (267)
T d2ewsa1           1 MK-VGIDAGGTLIKIVQEQDNQR---TFKT--ELTKN-----------IDQVVEWLNQQQIEKLCLTGGNA   54 (267)
T ss_dssp             CE-EEEEECSSEEEEEEECSSCE---EEEE--EEGGG-----------HHHHHHHHHTSCCSEEEEESTTH
T ss_pred             CE-EEEEECHHHEEEEEEECCCC---EEEE--EECCC-----------HHHHHHHHHHHHHHHEEEECCCC
T ss_conf             98-99997720388899928996---8999--86354-----------89999999975322346623445


No 16 
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
Probab=86.99  E-value=0.98  Score=22.66  Aligned_cols=61  Identities=13%  Similarity=0.130  Sum_probs=40.7

Q ss_pred             EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC-CCCEEEEE
Q ss_conf             999978887205899997199689998336873889998889999999899986227-96277885
Q gi|254780554|r    7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW-RPEEAAVE   71 (169)
Q Consensus         7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~-~Pd~vaiE   71 (169)
                      .||||-|-+++=++++|..++   ++....+.|+. .+...-+..|.+.+.++..++ .+..++|=
T Consensus         2 yiGiDiGgT~i~~~l~d~~g~---i~~~~~~~t~~-~~~~~~~~~i~~~i~~~~~~~~~~~~igi~   63 (117)
T d2ap1a2           2 YYGFDIGGTKIALGVFDSTRR---LQWEKRVPTPH-TSYSAFLDAVCELVEEADQRFGVKGSVGIG   63 (117)
T ss_dssp             EEEEEECSSEEEEEEEETTCC---EEEEEEEECCC-SCHHHHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred             EEEEEECCCEEEEEEEECCCC---EEEEEEEEECC-CCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             999997801099999969999---99998774024-578999999999999988626741269872


No 17 
>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}
Probab=86.71  E-value=1  Score=22.57  Aligned_cols=59  Identities=17%  Similarity=0.053  Sum_probs=37.0

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             699997888720589999719968999833687388999888999999989998622796
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP   65 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~P   65 (169)
                      -|||||-|-+++=++++|..+++.. .+.-.+.++...+...=+..|.+.+.++..++.+
T Consensus         3 ~vlGiDiGgT~i~~~l~d~~~g~i~-~~~~~~~t~~~~~~~~~~~~i~~~~~~l~~~~~~   61 (129)
T d1woqa1           3 PLIGIDIGGTGIKGGIVDLKKGKLL-GERFRVPTPQPATPESVAEAVALVVAELSARPEA   61 (129)
T ss_dssp             CEEEEEECSSEEEEEEEETTTTEEE-EEEEEEECCSSCCHHHHHHHHHHHHHHHHTSTTC
T ss_pred             CEEEEEECCCEEEEEEEECCCCEEE-EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             8899998836699999989999899-9986014246778999999999999998740143


No 18 
>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}
Probab=86.44  E-value=0.33  Score=25.55  Aligned_cols=31  Identities=26%  Similarity=0.393  Sum_probs=23.5

Q ss_pred             CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEE
Q ss_conf             80699997888720589999719968999833687
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV   38 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~   38 (169)
                      +||||-|-||++++=|+++|.+  +  .+..|.|+
T Consensus         1 mmkILViN~GSSSlK~alf~~~--~--~~~~~~i~   31 (172)
T d1saza1           1 MFRILTINPGSTSTKLSIFEDE--R--MVKMQNFS   31 (172)
T ss_dssp             CCEEEEEEECSSEEEEEEEETT--E--EEEEEEEE
T ss_pred             CCEEEEECCCHHHHEEEEEECC--C--CEEEEEEE
T ss_conf             9779998677075547899189--7--05478778


No 19 
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=86.42  E-value=1  Score=22.48  Aligned_cols=56  Identities=9%  Similarity=0.065  Sum_probs=41.2

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             06999978887205899997199689998336873889998889999999899986227
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW   63 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~   63 (169)
                      --+||||-|-+++-.+++|..|+   ++....+.++...+...-+..+.+.++++++.+
T Consensus         4 ~~~igidig~~~i~~~l~d~~G~---il~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~   59 (128)
T d2hoea3           4 AYVLGIEVTRDEIAACLIDASMN---ILAHEAHPLPSQSDREETLNVMYRIIDRAKDMM   59 (128)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCC---EEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCEEEEEEECCCCC---EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             79999999999999999959998---999998851457898999999999999999971


No 20 
>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}
Probab=85.05  E-value=1.2  Score=22.06  Aligned_cols=57  Identities=9%  Similarity=0.128  Sum_probs=44.6

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             6999978887205899997199689998336873889998889999999899986227962
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE   66 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd   66 (169)
                      .+||||-|.+.+-++++|..|+.   +....+.++. .+.++.+..|.+.+.++++++..+
T Consensus         5 ~~lgi~ig~~~i~~~l~d~~G~i---l~~~~~~~~~-~~~~~~~~~i~~~i~~~~~~~~~~   61 (128)
T d1z05a3           5 QFLSMRLGRGYLTIALHELGGEV---LIDTKIDIHE-IDQDDVLARLLFEIEEFFQTYAAQ   61 (128)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCE---EEEEEEECCC-CBHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             EEEEEEECCCEEEEEEECCCCCE---EEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999989999999999598999---9999721346-898999999999999999974324


No 21 
>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}
Probab=82.20  E-value=1.6  Score=21.34  Aligned_cols=55  Identities=9%  Similarity=0.128  Sum_probs=37.5

Q ss_pred             EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             99997888720589999719968999833687388999888999999989998622796277885
Q gi|254780554|r    7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE   71 (169)
Q Consensus         7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE   71 (169)
                      ++|||-|-+++-++++|.+++   +++...+.|+.    +   ..+.+.+.+.+.+++...+.|=
T Consensus         2 ~~giDiGgT~i~~~l~d~~g~---i~~~~~~~t~~----~---~~~~~~i~~~~~~~~~~~igi~   56 (118)
T d1xc3a1           2 LGGIEAGGTKFVCAVGREDGT---IIDRIEFPTKM----P---DETIEKVIQYFSQFSLQAIGIG   56 (118)
T ss_dssp             EEEEEECSSEEEEEEECTTSC---EEEEEEEECCC----H---HHHHHHHHHHHTTSCCSEEEEE
T ss_pred             EEEEEECCCEEEEEEECCCCC---EEEEEEECCCC----H---HHHHHHHHHHHHHCCCEECCEE
T ss_conf             999996647899999959998---99999965899----7---9999999999752144034466


No 22 
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Probab=80.84  E-value=0.46  Score=24.70  Aligned_cols=18  Identities=44%  Similarity=0.682  Sum_probs=16.4

Q ss_pred             EEEEECCCCCEEEEEEEE
Q ss_conf             699997888720589999
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVD   23 (169)
Q Consensus         6 rILGIDPGl~~tG~avie   23 (169)
                      ||+|||-|++++..|+.+
T Consensus         1 ~VvGIDfGTt~s~va~~~   18 (183)
T d1dkgd1           1 KIIGIDLGTTNSCVAIMD   18 (183)
T ss_dssp             CCCEEECCSSEEEEEEEE
T ss_pred             CEEEEECCHHCEEEEEEE
T ss_conf             999998582028999999


No 23 
>d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}
Probab=80.74  E-value=1.8  Score=21.02  Aligned_cols=23  Identities=35%  Similarity=0.570  Sum_probs=17.9

Q ss_pred             EEEECCCCCEEEEEEEEEECCEEE
Q ss_conf             999978887205899997199689
Q gi|254780554|r    7 IIGIDPGLRRTGWGIVDVAGDNLC   30 (169)
Q Consensus         7 ILGIDPGl~~tG~avie~~~~~~~   30 (169)
                      ||++|=|.++|=|.+.+ +++.+.
T Consensus         2 ilivDgGgTKT~~vl~d-~g~~i~   24 (107)
T d1zbsa2           2 ILIGDSGSTKTDWCIAK-EGKSLG   24 (107)
T ss_dssp             EEEEEECSSEEEEEEEE-TTEEEE
T ss_pred             EEEEEECCCCEEEEEEC-CCCEEE
T ss_conf             99999541138999987-997689


No 24 
>d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}
Probab=79.47  E-value=2  Score=20.76  Aligned_cols=93  Identities=12%  Similarity=0.095  Sum_probs=57.7

Q ss_pred             EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC------CCCCH----HHHHHHHHHHHHHHHHCCCCCEE-EEEHHHH
Q ss_conf             9999788872058999971996899983368738------89998----88999999989998622796277-8850332
Q gi|254780554|r    7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC------VRQSL----AFRLCQLYEGLTDVIKNWRPEEA-AVEQVFV   75 (169)
Q Consensus         7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~------~~~~~----~~Rl~~I~~~l~~ii~~~~Pd~v-aiE~~F~   75 (169)
                      +=.||-|++.+-+-|.+..++.++.++.-...+.      ....+    -+|+...-..+.++++.|.++.+ ++=.--+
T Consensus         2 ~A~IDiGSNsirl~I~~~~~~~~~~l~~~~~~~rLg~~~~~~g~l~~~~i~~~~~~l~~f~~~~~~~~v~~i~~vaTsA~   81 (124)
T d1u6za2           2 FAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVGTHTL   81 (124)
T ss_dssp             EEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCCBCHHHHHHHHHHHHHHHHHTTTCCGGGEEEEECHHH
T ss_pred             EEEEEECCCEEEEEEEEECCCCEEEEEEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHH
T ss_conf             89999755409999999549970475342478614443153698599999999999999999987438640203489999


Q ss_pred             C--CCHHHHHHHHHHHHHHHHHH-HHCCCCEEEECHH
Q ss_conf             0--24124788999999999999-8601617752606
Q gi|254780554|r   76 N--KDAVATLKLGQARAIAILSP-ALARIPVSEYAPN  109 (169)
Q Consensus        76 ~--~n~~t~~~lg~arGvi~l~~-~~~~i~v~ey~P~  109 (169)
                      .  +|...          ++-.. ...|+++.-.++.
T Consensus        82 R~A~N~~~----------~~~~i~~~~gi~i~ilsg~  108 (124)
T d1u6za2          82 RQALNATD----------FLKRAEKVIPYPIEIISGN  108 (124)
T ss_dssp             HHCTTHHH----------HHHHHTTTCSSCEEECCHH
T ss_pred             HCCCCHHH----------HHHHHHHHHCCCEEEECHH
T ss_conf             80866889----------9999999869997996889


No 25 
>d1g99a1 c.55.1.2 (A:1-197) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]}
Probab=78.95  E-value=1.7  Score=21.16  Aligned_cols=31  Identities=13%  Similarity=0.428  Sum_probs=24.0

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEE
Q ss_conf             069999788872058999971996899983368
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI   37 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I   37 (169)
                      |+||-|-||++++=|+++|..+.+  .+..|.+
T Consensus         1 MkILViN~GSSS~K~alf~~~~~~--~l~~g~~   31 (197)
T d1g99a1           1 MKVLVINAGSSSLKYQLIDMTNES--ALAVGLC   31 (197)
T ss_dssp             CEEEEEEECSSCEEEEEEETTTTE--EEEEEEE
T ss_pred             CCEEEECCCHHHHEEEEEECCCCC--EEEEEEE
T ss_conf             909999477372543889779996--7888678


No 26 
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.89  E-value=1  Score=22.55  Aligned_cols=24  Identities=25%  Similarity=0.230  Sum_probs=21.0

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEE
Q ss_conf             699997888720589999719968
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNL   29 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~   29 (169)
                      -+||||=|-++|=|.++|.+|+.+
T Consensus         4 ~~~GIDgGGTkT~~~l~d~~G~~l   27 (117)
T d2ch5a2           4 IYGGVEGGGTRSEVLLVSEDGKIL   27 (117)
T ss_dssp             EEEEEEECTTCEEEEEEETTSCEE
T ss_pred             EEEEEECCHHHEEEEEECCCCCEE
T ss_conf             899998480257999998999999


No 27 
>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]}
Probab=75.34  E-value=2.6  Score=20.04  Aligned_cols=58  Identities=19%  Similarity=0.189  Sum_probs=44.8

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             6999978887205899997199689998336873889998889999999899986227
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW   63 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~   63 (169)
                      -|.|||-|++++=..+-+..+++++++.+|...+.--+..-.-+..+.+.+++.+++-
T Consensus         2 ii~glDIGtski~~~v~~~~~~~~~ilg~g~~~s~GiKG~I~ni~~~~~aI~~av~~A   59 (239)
T d1nbwa2           2 LIAGIDIGNATTEVALASDYPQARAFVASGIVATTGMKGTRDNIAGTLAALEQALAKT   59 (239)
T ss_dssp             EEEEEEECSSEEEEEEEECBTTBCCCCEEEEEECCSSTTSGGGHHHHHHHHHHHHTTS
T ss_pred             EEEEEECCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCEEECHHHHHHHHHHHHHHH
T ss_conf             7999975777599999998699779999996168887215987999999999999986


No 28 
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}
Probab=70.66  E-value=2.1  Score=20.66  Aligned_cols=73  Identities=19%  Similarity=0.102  Sum_probs=40.9

Q ss_pred             CCEEEEECCCCCEEEEEEEEEECC--EEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHC
Q ss_conf             806999978887205899997199--6899983368738899988899999998999862279627788503320
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAGD--NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN   76 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~~--~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~   76 (169)
                      ..-|+.+||++..+|-+++...-+  ....-....++.........-+..--.....+++....|.+.||.+=.+
T Consensus        84 ~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~g  158 (327)
T d2p67a1          84 KVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG  158 (327)
T ss_dssp             CEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCT
T ss_pred             CEEEECCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             332203777610006515541367887405654101565553444420332057899988649982787503211


No 29 
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
Probab=63.12  E-value=2.6  Score=20.07  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=19.0

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEE
Q ss_conf             699997888720589999719968999
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFV   32 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li   32 (169)
                      .|+|||=|++++..|+++  ++++.++
T Consensus         2 ~vvGIDfGTt~s~va~~~--~g~~~ii   26 (185)
T d1bupa1           2 PAVGIDLGSTYSCVGVFQ--HGKVEII   26 (185)
T ss_dssp             CCEEEEECSSEEEEEEEE--TTEEEEC
T ss_pred             CEEEEECCHHCEEEEEEE--CCEEEEE
T ss_conf             999998682308999998--9997998


No 30 
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli [TaxId: 562]}
Probab=55.04  E-value=6.5  Score=17.58  Aligned_cols=56  Identities=13%  Similarity=0.048  Sum_probs=32.8

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             69999788872058999971996899983368738-----89---9988899999998999862279
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWR   64 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~   64 (169)
                      =|||||-|++++=-+++|.+++.   +.......+     +.   .+..+=...+.+.+.+++++..
T Consensus         4 y~lgiDiGTssvKa~l~d~~g~~---~~~~~~~~~~~~~~~g~~E~d~~~~~~~~~~~~~~~~~~~~   67 (252)
T d2p3ra1           4 YIVALDQGTTSSRAVVMDHDANI---ISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKAD   67 (252)
T ss_dssp             EEEEEEECSSEEEEEEECTTCCE---EEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEECCCCEEEEEEECCCCE---EEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999820234565589298989---99998617725589981798999999999999887776511


No 31 
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}
Probab=52.96  E-value=7.1  Score=17.37  Aligned_cols=59  Identities=3%  Similarity=0.018  Sum_probs=38.8

Q ss_pred             CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             880699997888720589999719968999833687388999888999999989998622796
Q gi|254780554|r    3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP   65 (169)
Q Consensus         3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~P   65 (169)
                      +.-++||||-|.+..-++++|..|+-.   ....+..+...+ .+-+..|.+.+.++++++..
T Consensus         2 e~~~~l~i~i~~~~i~~~l~Dl~G~~l---~~~~~~~~~~~~-~~~~~~l~~~i~~~l~~~~~   60 (129)
T d1z6ra2           2 EAWHYLSLRISRGEIFLALRDLSSKLV---VEESQELALKDD-LPLLDRIISHIDQFFIRHQK   60 (129)
T ss_dssp             TTCEEEEEEEETTEEEEEEEETTCCEE---EEEEEECCSSCS-SCHHHHHHHHHHHHHHHTGG
T ss_pred             CCEEEEEEEECCCEEEEEEECCCCCEE---EEEEEECCCCCH-HHHHHHHHHHHHHHHHHCCC
T ss_conf             735999999899999999995999988---787740245544-68999999999999985375


No 32 
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]}
Probab=52.25  E-value=7.2  Score=17.30  Aligned_cols=56  Identities=13%  Similarity=0.132  Sum_probs=35.7

Q ss_pred             EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC--CCEEEEE
Q ss_conf             9999788872058999971996899983368738899988899999998999862279--6277885
Q gi|254780554|r    7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR--PEEAAVE   71 (169)
Q Consensus         7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~--Pd~vaiE   71 (169)
                      -|++|-|=|++-+|++|.+++.+  ....++.++....       +.+.+.+++++++  ++.++|=
T Consensus         3 ~L~~DIGGT~ir~glvd~~~~~i--~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~igI~   60 (319)
T d1sz2a1           3 ALVGDVGGTNARLALCDIASGEI--SQAKTYSGLDYPS-------LEAVIRVYLEEHKVEVKDGCIA   60 (319)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCE--EEEEEEEGGGCSC-------HHHHHHHHHHHSCCCCCEEEEE
T ss_pred             EEEEEECHHHEEEEEEECCCCEE--EEEEEECCCCHHH-------HHHHHHHHHHHCCCCCCEEEEE
T ss_conf             99999881114437999999989--7888768998757-------9999999998638876669998


No 33 
>d1zxoa1 c.55.1.5 (A:3-106) Hypothetical protein BT3618 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=45.96  E-value=0.92  Score=22.82  Aligned_cols=20  Identities=30%  Similarity=0.541  Sum_probs=15.6

Q ss_pred             ECCCCCEEEEEEEEEECCEEE
Q ss_conf             978887205899997199689
Q gi|254780554|r   10 IDPGLRRTGWGIVDVAGDNLC   30 (169)
Q Consensus        10 IDPGl~~tG~avie~~~~~~~   30 (169)
                      .|-|+++|-|.+++ +++...
T Consensus         3 aDSGSTKtDW~l~~-~g~~~~   22 (104)
T d1zxoa1           3 ADSGSTKTDWCVVL-NGAVIK   22 (104)
T ss_dssp             EECCTTCEEEEEEC-SSSEEE
T ss_pred             ECCCCCCEEEEEEC-CCCEEE
T ss_conf             63587805379983-998588


No 34 
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}
Probab=42.60  E-value=6.1  Score=17.75  Aligned_cols=16  Identities=38%  Similarity=0.293  Sum_probs=13.7

Q ss_pred             EEEEECCCCCEEEEEE
Q ss_conf             6999978887205899
Q gi|254780554|r    6 RIIGIDPGLRRTGWGI   21 (169)
Q Consensus         6 rILGIDPGl~~tG~av   21 (169)
                      |.+|||-|++++-.++
T Consensus         1 ~~iGIDlGTtns~va~   16 (137)
T d1jcea1           1 KDIGIDLGTANTLVFL   16 (137)
T ss_dssp             CEEEEEECSSEEEEEE
T ss_pred             CEEEEECCHHHEEEEE
T ss_conf             9389975756299999


No 35 
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=41.00  E-value=6.9  Score=17.43  Aligned_cols=16  Identities=25%  Similarity=0.389  Sum_probs=13.8

Q ss_pred             CEEEEECCCCCEEEEE
Q ss_conf             0699997888720589
Q gi|254780554|r    5 IRIIGIDPGLRRTGWG   20 (169)
Q Consensus         5 MrILGIDPGl~~tG~a   20 (169)
                      |-|+|||.|...|-+.
T Consensus         1 m~iigiD~G~g~tK~~   16 (164)
T d2fsja2           1 MVVVGLDVGYGDTKVI   16 (164)
T ss_dssp             CEEEEEEECSSEEEEE
T ss_pred             CEEEEEECCCCCEEEE
T ss_conf             9799998588523798


No 36 
>d1p5dx4 d.129.2.1 (X:368-463) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=34.81  E-value=12  Score=15.98  Aligned_cols=45  Identities=16%  Similarity=0.234  Sum_probs=30.2

Q ss_pred             EEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             058999971996899983368738899988899999998999862279627
Q gi|254780554|r   17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE   67 (169)
Q Consensus        17 tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~   67 (169)
                      -||.++...|..+.+.-+  .+.+    -.+++..|.+.+.++++...++.
T Consensus        48 dgW~liR~SnTEP~lri~--~Ea~----s~~~~~~l~~~~~~~l~~i~~~l   92 (96)
T d1p5dx4          48 KGWGLVRASNTTPVLVLR--FEAD----TEEELERIKTVFRNQLKAVDSSL   92 (96)
T ss_dssp             TEEEEEEECSSSSEEEEE--EEES----SHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             CCEEEEEECCCCCEEEEE--EEEC----CHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             628999867999779999--9889----99999999999999999753368


No 37 
>d2ot2a1 b.40.14.1 (A:1-90) Hydrogenase expression/formation protein HypC {Escherichia coli [TaxId: 562]}
Probab=31.57  E-value=15  Score=15.29  Aligned_cols=52  Identities=25%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             CCEEEEECCCCCEEEEEEEEEEC---------------------CEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             80699997888720589999719---------------------9689998336873889998889999999899986
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAG---------------------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI   60 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~---------------------~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii   60 (169)
                      +|||+-||.+     +|.+|..|                     +.+-+++.|.....-.....++...+.+.+.++-
T Consensus         6 P~kV~~i~~~-----~A~vd~~Gv~r~v~l~lv~~~~~~~e~~vGDyVLVH~G~Ai~~ideeeA~etl~ll~el~~~~   78 (90)
T d2ot2a1           6 PGQIRTIDGN-----QAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGFAMSVINEAEARDTLDALQNMFDVE   78 (90)
T ss_dssp             EEEEEEECSS-----EEEEECSSSEEEEECTTTCSBCTTSCBCTTCEEEEETTEEEEEECHHHHHHHHHHHHHHHHTS
T ss_pred             CEEEEEECCC-----EEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             2799998499-----899993892799997401356677646878899995217777589999999999999998777


No 38 
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}
Probab=30.76  E-value=8.6  Score=16.83  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=18.2

Q ss_pred             EEEECCCCCEEEEEEEEEECC
Q ss_conf             999978887205899997199
Q gi|254780554|r    7 IIGIDPGLRRTGWGIVDVAGD   27 (169)
Q Consensus         7 ILGIDPGl~~tG~avie~~~~   27 (169)
                      |||||-|++++=-+++|.+++
T Consensus         3 vlgiDiGTtsvKa~l~D~~g~   23 (252)
T d1r59o1           3 VMAIDQGTTSSRAIIFDRNGK   23 (252)
T ss_dssp             EEEEBCCSSBCBCCEECSSSC
T ss_pred             EEEEEECCCCEEEEEEECCCC
T ss_conf             999984223435358948798


No 39 
>d1io2a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}
Probab=29.16  E-value=7.2  Score=17.30  Aligned_cols=57  Identities=18%  Similarity=0.207  Sum_probs=28.2

Q ss_pred             CEEEEECCCCC-------EEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             06999978887-------2058999971996899983368738899988899999998999862279
Q gi|254780554|r    5 IRIIGIDPGLR-------RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR   64 (169)
Q Consensus         5 MrILGIDPGl~-------~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~   64 (169)
                      |+|.|||=.=+       ..+-.+++.+. ...+...| ++=+++.+..+| .+|++.+.+....|.
T Consensus         1 m~i~GvDEaGRG~l~GPvvvaav~~~~~~-~~~l~~~g-v~DSK~Ls~~kR-~~l~~~I~~~~~~~~   64 (213)
T d1io2a_           1 MKIAGIDEAGRGPVIGPMVIAAVVVDENS-LPKLEELK-VRDSKKLTPKRR-EKLFNEILGVLDDYV   64 (213)
T ss_dssp             CEEEEEEEECSSCSBSCEEEEEEEEEGGG-HHHHHHTT-GGGCTTCCHHHH-HHHHHHHHTTCSEEE
T ss_pred             CCEEEECCCCCCCCCCCEEEEEEEECHHH-CCHHHHCC-CCHHHHCCHHHH-HHHHHHHHHHHHHHH
T ss_conf             93880337686663110078999982042-52333137-610244767788-999999999987755


No 40 
>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]}
Probab=27.76  E-value=18  Score=14.88  Aligned_cols=58  Identities=17%  Similarity=0.181  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHH
Q ss_conf             8899988899999998999862279627788503320241247889999999999998601617752606
Q gi|254780554|r   40 CVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN  109 (169)
Q Consensus        40 ~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~  109 (169)
                      ....++.+.+..+...+.+++.+++||.|.+-.-     .-++  ++     +.+++...++|+..+.-.
T Consensus        64 ~~~~s~~~~~~~~~~~~~~~l~~~kPD~vlv~GD-----r~e~--la-----~a~aa~~~~ipi~HiegG  121 (373)
T d1v4va_          64 QERQALPDLAARILPQAARALKEMGADYVLVHGD-----TLTT--FA-----VAWAAFLEGIPVGHVEAG  121 (373)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHHTTCSEEEEESS-----CHHH--HH-----HHHHHHHTTCCEEEETCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCCC--HH-----HHHHHHHHHHHHEEECCC
T ss_conf             8888778999999998766664037640011136-----7531--03-----778898762122241343


No 41 
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=27.75  E-value=18  Score=14.88  Aligned_cols=14  Identities=14%  Similarity=-0.033  Sum_probs=6.0

Q ss_pred             CCCCCCCHHHHHHH
Q ss_conf             99999556789999
Q gi|254780554|r  137 SFFKGKDAADALAI  150 (169)
Q Consensus       137 ~~~~~~D~aDAlAi  150 (169)
                      ++|-..|..-|.++
T Consensus       147 EKPfG~Dl~SA~~L  160 (195)
T d1h9aa1         147 EKPFGTSYDTAAEL  160 (195)
T ss_dssp             CSCSCSSHHHHHHH
T ss_pred             ECCCCCCHHHHHHH
T ss_conf             57865777889999


No 42 
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}
Probab=24.83  E-value=20  Score=14.55  Aligned_cols=52  Identities=15%  Similarity=0.088  Sum_probs=32.3

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             6999978887205899997199689998336873889998889999999899986227962
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE   66 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd   66 (169)
                      -+|++|-|=|++=+|+++..+..+...  ....++...++.+       -+++++.+++++
T Consensus         3 ~~L~~DIGGTn~r~alv~~~~~~l~~~--~~~~~~~~~~~~~-------~i~~~~~~~~~~   54 (110)
T d1q18a1           3 YALVGDVGGTNARLALCDIASGEISQA--KTYSGLDYPSLEA-------VIRVYLEEHKVE   54 (110)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEE--EEEEGGGCSCHHH-------HHHHHHHHHTCC
T ss_pred             EEEEEEECCHHEEEEEEECCCCEEEEE--EEECCCCHHHHHH-------HHHHHHHHCCCC
T ss_conf             899999880059999998699808888--8513543245999-------999987633666


No 43 
>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=23.78  E-value=21  Score=14.43  Aligned_cols=50  Identities=26%  Similarity=0.432  Sum_probs=36.3

Q ss_pred             HHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH
Q ss_conf             99899986227962778850332024124788999999999999860161775260677765
Q gi|254780554|r   53 YEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA  114 (169)
Q Consensus        53 ~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~vKka  114 (169)
                      .+.+.++++..+|+.+.+     .-..||++.+++.       +.+.|+++..-+|..|..+
T Consensus        68 ~e~v~~Ii~~E~p~~ii~-----~~GGQtalnla~~-------L~~~gv~iLGt~~~~Id~a  117 (121)
T d1a9xa4          68 LEDVLEIVRIEKPKGVIV-----QYGGQTPLKLARA-------LEAAGVPVIGTSPDAIDRA  117 (121)
T ss_dssp             HHHHHHHHHHHCCSEEEC-----SSSTHHHHTTHHH-------HHHTTCCBCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEE-----EHHHHHHHHHHHH-------HHHCCCCEECCCHHHHHHH
T ss_conf             999999999769987995-----3321317789999-------9996994889799999898


No 44 
>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]}
Probab=23.78  E-value=21  Score=14.43  Aligned_cols=77  Identities=18%  Similarity=0.162  Sum_probs=50.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCC--
Q ss_conf             899988899999998999862279627788503320241247889999999999998601617752606777653168--
Q gi|254780554|r   41 VRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV--  118 (169)
Q Consensus        41 ~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~--  118 (169)
                      ...+....+..+-..+.+++.+++||.|.+-.-     ..++  ++     ..++|...+||+..+--..    .||+  
T Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~kpD~v~v~GD-----r~e~--la-----~a~aa~~~~Ipi~HiegG~----~s~~~~  128 (377)
T d1o6ca_          65 ERQTLAEITSNALVRLDELFKDIKPDIVLVHGD-----TTTT--FA-----GSLAAFYHQIAVGHVEAGL----RTGNKY  128 (377)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHCCSEEEEETT-----CHHH--HH-----HHHHHHHTTCEEEEESCCC----CCSCTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-----CCCC--CH-----HHHHHHHCCCEEEEEECCC----CCCCCC
T ss_conf             998899999999985056665336653676403-----4543--01-----5666531142279995145----654332


Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             888999999999996
Q gi|254780554|r  119 GHGDKKQIHMMLKML  133 (169)
Q Consensus       119 G~A~KeqV~~mV~~l  133 (169)
                      ..+--|.+..++.++
T Consensus       129 ~~~~de~~R~~iskl  143 (377)
T d1o6ca_         129 SPFPEELNRQMTGAI  143 (377)
T ss_dssp             TTTTHHHHHHHHHHH
T ss_pred             CCCCHHHHCCCCCCC
T ss_conf             347145540035653


No 45 
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}
Probab=23.63  E-value=12  Score=16.05  Aligned_cols=75  Identities=16%  Similarity=0.105  Sum_probs=42.2

Q ss_pred             CCCEEEEECCCCCEEEEEEEEEECC--EEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCC
Q ss_conf             8806999978887205899997199--68999833687388999888999999989998622796277885033202
Q gi|254780554|r    3 KSIRIIGIDPGLRRTGWGIVDVAGD--NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK   77 (169)
Q Consensus         3 ~~MrILGIDPGl~~tG~avie~~~~--~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~   77 (169)
                      +..-|+.+||++..+|=+++....+  ....-..-.++..+......-+..-......+++...-|.+.||.+=.+.
T Consensus        80 ~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq  156 (323)
T d2qm8a1          80 HKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQ  156 (323)
T ss_dssp             CCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred             CCEEEEECCCCCHHHHHCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHHH
T ss_conf             75134434655478775064101337887503440112665345331106778999976414899858986323332


No 46 
>d2a6aa2 c.55.1.9 (A:104-193) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=21.14  E-value=19  Score=14.76  Aligned_cols=49  Identities=14%  Similarity=0.231  Sum_probs=29.6

Q ss_pred             HHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHC--CCCEEEECHHHH
Q ss_conf             9899986227962778850332024124788999999999999860--161775260677
Q gi|254780554|r   54 EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALA--RIPVSEYAPNTI  111 (169)
Q Consensus        54 ~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~--~i~v~ey~P~~v  111 (169)
                      +++.++.++|+|..|--|++|.+-  +.  .+-+.     -.+.+.  -+..+|+-|...
T Consensus        38 ee~~~i~ke~~p~~vl~ddi~isp--~v--lvees-----er~fke~k~ihyyeieplyl   88 (90)
T d2a6aa2          38 EELEEITKEFSPKIVLKDDLLISP--AV--LVEES-----ERLFREKKTIHYYEIEPLYL   88 (90)
T ss_dssp             HHHHHHHHHHCCSEEEESSCCCCH--HH--HHHHH-----HHHHHTTCCBCGGGTTHHHH
T ss_pred             HHHHHHHHHCCCCEEEECCEECCC--HH--HHHHH-----HHHHHCCCEEEEEEEEEEEE
T ss_conf             999999984497647520012271--77--77778-----99862477178997210001


No 47 
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.98  E-value=16  Score=15.15  Aligned_cols=19  Identities=32%  Similarity=0.511  Sum_probs=15.6

Q ss_pred             CCCCHHHHHHHHHHHCCCC
Q ss_conf             8889999999999962889
Q gi|254780554|r  119 GHGDKKQIHMMLKMLMPES  137 (169)
Q Consensus       119 G~A~KeqV~~mV~~ll~~~  137 (169)
                      .+|+|++|...|+.|+.+.
T Consensus        23 ~ka~K~~id~aV~~LL~LK   41 (54)
T d1r6ta1          23 GNASKDEIDSAVKMLVSLK   41 (54)
T ss_dssp             TTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
T ss_conf             5898899999999999999


No 48 
>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}
Probab=20.42  E-value=25  Score=14.01  Aligned_cols=54  Identities=6%  Similarity=-0.029  Sum_probs=34.7

Q ss_pred             HHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf             986016177526067776531688889999999999962889999955678999
Q gi|254780554|r   96 PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALA  149 (169)
Q Consensus        96 ~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D~aDAlA  149 (169)
                      ...+||.|.-++|..+.-.........++....+.+.........|+|.++++.
T Consensus       178 la~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~  231 (256)
T d1ulua_         178 LGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGL  231 (256)
T ss_dssp             HGGGTCEEEEEEECCC----------CHHHHHHHHHHSTTSSCCCHHHHHHHHH
T ss_pred             HCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             651399876511330551123211335899999985699889959999999999


No 49 
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=20.22  E-value=17  Score=14.99  Aligned_cols=11  Identities=27%  Similarity=0.332  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHH
Q ss_conf             67899999997
Q gi|254780554|r  144 AADALAIAVCH  154 (169)
Q Consensus       144 ~aDAlAiAl~h  154 (169)
                      .+..+|++-+-
T Consensus       337 ~a~~vgi~avk  347 (370)
T d1iq0a2         337 AARMVALGAIR  347 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHEE
T ss_conf             99876166322


No 50 
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=20.19  E-value=25  Score=13.98  Aligned_cols=19  Identities=5%  Similarity=0.041  Sum_probs=16.0

Q ss_pred             CCCCHHHHHHHHHHHCCCC
Q ss_conf             8889999999999962889
Q gi|254780554|r  119 GHGDKKQIHMMLKMLMPES  137 (169)
Q Consensus       119 G~A~KeqV~~mV~~ll~~~  137 (169)
                      -+|+|.|+..+|+.+++..
T Consensus        30 ~~A~K~~IK~AVe~lf~Vk   48 (81)
T d1vqos1          30 DRASKGEVADAVEEQYDVT   48 (81)
T ss_dssp             TTCCHHHHHHHHHHHHCCC
T ss_pred             CCCCHHHHHHHHHHHCCCC
T ss_conf             8589899999999984993


Done!